BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002426
(924 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086480|emb|CBI32069.3| unnamed protein product [Vitis vinifera]
Length = 1064
Score = 1513 bits (3916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/917 (80%), Positives = 819/917 (89%), Gaps = 3/917 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 148 SVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIYCPKEVQLICLSATVANPDEL 207
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKGK MNRKLSL+YLQ S
Sbjct: 208 AGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKSMNRKLSLSYLQNYASGD 267
Query: 131 KPYKDGGSRRRNSRK-HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
YKD SRRRN +K +DM+ ++ + GQ LSKN IN IRRSQVPQV+DTLWHL++R
Sbjct: 268 NSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDINTIRRSQVPQVMDTLWHLKAR 327
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSEV+LALKRFR+ YPDAVRE A+KGLL
Sbjct: 328 DMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLALKRFRLQYPDAVRESAVKGLL 387
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR SGR
Sbjct: 388 QGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGESGR 447
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
IQL+SNEL QMAGRAGRRGID GH VLVQTPY+GAEECCKLLFAGVEPLVSQFTASYGM
Sbjct: 448 IQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECCKLLFAGVEPLVSQFTASYGM 507
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAGAKV +ES+D+K LQAGR+LEEARKLVEQSFGNYVGSNVMLAAK+EL K++
Sbjct: 508 VLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKVE 567
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQEEL+AEKR RTELRRRMEL+R SAL
Sbjct: 568 KEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRAEKRLRTELRRRMELRRMSAL 627
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR- 548
K +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLGK DS D SK+KNM ND FALN
Sbjct: 628 KLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSFDGSKVKNMVYTNDCFALNAV 687
Query: 549 LAQSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
+ + N DD D+Q + KPSYYVALGSDN+WY FTEKWIKTVYR GFPNVALAQGDALPRE
Sbjct: 688 VTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTVYRTGFPNVALAQGDALPREI 747
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
M LLDK ++ WE+LA SE GGLWC+EGSLETWSWSLNVPVLSSLSE DEVL MS Y++
Sbjct: 748 MRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVPVLSSLSEDDEVLKMSQAYYE 807
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D KFTEEKIKRLKARS RL+ RIEQIE
Sbjct: 808 AVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLSSRIEQIE 867
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
PSGWKEFL++SNVIHETRALDINT +IFPLGETAAAIRGENELWLAMVLR+K+LL LKPA
Sbjct: 868 PSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGENELWLAMVLRSKVLLGLKPA 927
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
QLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LDE R+S L+LQEKH V+IPCC
Sbjct: 928 QLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKHDVQIPCC 987
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
LDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQIPKLPD+D LQ NA
Sbjct: 988 LDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDIDPLLQSNA 1047
Query: 908 VDASNVMDRPPISELAG 924
+ ASNVMDRPPISELAG
Sbjct: 1048 MTASNVMDRPPISELAG 1064
>gi|225424807|ref|XP_002267766.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Vitis vinifera]
Length = 1174
Score = 1512 bits (3915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/917 (80%), Positives = 819/917 (89%), Gaps = 3/917 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 258 SVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIYCPKEVQLICLSATVANPDEL 317
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKGK MNRKLSL+YLQ S
Sbjct: 318 AGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKSMNRKLSLSYLQNYASGD 377
Query: 131 KPYKDGGSRRRNSRK-HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
YKD SRRRN +K +DM+ ++ + GQ LSKN IN IRRSQVPQV+DTLWHL++R
Sbjct: 378 NSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDINTIRRSQVPQVMDTLWHLKAR 437
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSEV+LALKRFR+ YPDAVRE A+KGLL
Sbjct: 438 DMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLALKRFRLQYPDAVRESAVKGLL 497
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR SGR
Sbjct: 498 QGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGESGR 557
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
IQL+SNEL QMAGRAGRRGID GH VLVQTPY+GAEECCKLLFAGVEPLVSQFTASYGM
Sbjct: 558 IQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECCKLLFAGVEPLVSQFTASYGM 617
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAGAKV +ES+D+K LQAGR+LEEARKLVEQSFGNYVGSNVMLAAK+EL K++
Sbjct: 618 VLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKVE 677
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQEEL+AEKR RTELRRRMEL+R SAL
Sbjct: 678 KEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRAEKRLRTELRRRMELRRMSAL 737
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR- 548
K +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLGK DS D SK+KNM ND FALN
Sbjct: 738 KLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSFDGSKVKNMVYTNDCFALNAV 797
Query: 549 LAQSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
+ + N DD D+Q + KPSYYVALGSDN+WY FTEKWIKTVYR GFPNVALAQGDALPRE
Sbjct: 798 VTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTVYRTGFPNVALAQGDALPREI 857
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
M LLDK ++ WE+LA SE GGLWC+EGSLETWSWSLNVPVLSSLSE DEVL MS Y++
Sbjct: 858 MRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVPVLSSLSEDDEVLKMSQAYYE 917
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D KFTEEKIKRLKARS RL+ RIEQIE
Sbjct: 918 AVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLSSRIEQIE 977
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
PSGWKEFL++SNVIHETRALDINT +IFPLGETAAAIRGENELWLAMVLR+K+LL LKPA
Sbjct: 978 PSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGENELWLAMVLRSKVLLGLKPA 1037
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
QLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LDE R+S L+LQEKH V+IPCC
Sbjct: 1038 QLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKHDVQIPCC 1097
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
LDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQIPKLPD+D LQ NA
Sbjct: 1098 LDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDIDPLLQSNA 1157
Query: 908 VDASNVMDRPPISELAG 924
+ ASNVMDRPPISELAG
Sbjct: 1158 MTASNVMDRPPISELAG 1174
>gi|255558340|ref|XP_002520197.1| helicase, putative [Ricinus communis]
gi|223540689|gb|EEF42252.1| helicase, putative [Ricinus communis]
Length = 1161
Score = 1470 bits (3805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/916 (78%), Positives = 799/916 (87%), Gaps = 2/916 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
S+GMVSS SGLF VDVIVLDEVH+LSDISRGTVWEEI+IYCPK+VQ+ICLSATV N +EL
Sbjct: 246 SIGMVSSGSGLFHVDVIVLDEVHFLSDISRGTVWEEIVIYCPKKVQLICLSATVKNPEEL 305
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWI ++HGKTEL+TSS+RPVPLTW+FSTKT+L PLLDEKGKHMNRKLSLNYLQLS S V
Sbjct: 306 AGWINEVHGKTELVTSSKRPVPLTWHFSTKTSLFPLLDEKGKHMNRKLSLNYLQLSASGV 365
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
K YKD G RRRNSRK N + S LSKN I IRRS VPQV+DTL L+ RD
Sbjct: 366 KSYKDDGPRRRNSRKRGSNMGINSIASMSGEPLSKNDIGRIRRSLVPQVVDTLTQLKVRD 425
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
MLPAIWFIFNRRGCDAA+QYLE C LLDECE SEVELALKRF I PDAVRE A+KGLLK
Sbjct: 426 MLPAIWFIFNRRGCDAAMQYLEGCKLLDECETSEVELALKRFSIQNPDAVRETAVKGLLK 485
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVAAHHAGCLP+WKSFIEELFQRGL+KVVFATETLAAGINMPARTAV+SSLSKR++SGRI
Sbjct: 486 GVAAHHAGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSKRSSSGRI 545
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
QL+ NEL QMAGRAGRRGID RGHVVLVQTP E AEECCKLLFAG++PLVSQFTASYGMV
Sbjct: 546 QLSPNELLQMAGRAGRRGIDERGHVVLVQTPNEDAEECCKLLFAGLKPLVSQFTASYGMV 605
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LNLLAGAKV H+SNESD++K LQAGR+LEEARKLVEQSFG Y+GSNVMLA+++EL + Q+
Sbjct: 606 LNLLAGAKVTHISNESDNIKVLQAGRTLEEARKLVEQSFGTYIGSNVMLASREELARTQE 665
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
E + L SEISDDAIDRKSR+ LSE YKE+A+LQE+L+ EKR RTELRR ME+KR SALK
Sbjct: 666 EIEKLMSEISDDAIDRKSRQTLSEEPYKEIADLQEQLREEKRLRTELRRIMEVKRLSALK 725
Query: 491 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR-L 549
+ ++ N HLPFLC+QYKDSEGVEHSVP VY+GK DS DSSKLKNM S +DSFA N +
Sbjct: 726 LLFEELGNDHLPFLCIQYKDSEGVEHSVPVVYMGKADSTDSSKLKNMVSTSDSFATNAVI 785
Query: 550 AQSNGDDYDT-QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
QS + +T +D+ P YYVALGSDN+WY FTEKW+KT+YR GFPNVALAQGDA+PRE M
Sbjct: 786 VQSIASEVETVEDLVPCYYVALGSDNSWYLFTEKWVKTIYRTGFPNVALAQGDAVPREVM 845
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
LLDK E WEKLADSE GGLW MEGSLETWSWSLNVPVL+SLSE+DEVLH S YHDA
Sbjct: 846 RKLLDKEEKQWEKLADSELGGLWYMEGSLETWSWSLNVPVLNSLSENDEVLHGSQAYHDA 905
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
VE+YK QRTKVARLKKKIARTEGF+EYKKI+D FTE+KIKRLKARS RL RIE+IEP
Sbjct: 906 VEHYKGQRTKVARLKKKIARTEGFREYKKILDWKSFTEDKIKRLKARSNRLINRIEEIEP 965
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
SGWKEFL+ISNV+HE RALDINTQVIFPLGETAAAIRGENELWLAMVLR+KILLDLKPAQ
Sbjct: 966 SGWKEFLKISNVVHEIRALDINTQVIFPLGETAAAIRGENELWLAMVLRSKILLDLKPAQ 1025
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAVCAS+VSEGIKVR W+NNS IYEPS+ V N+I L+E RSS L+LQEKHGVEI C L
Sbjct: 1026 LAAVCASVVSEGIKVRAWENNSYIYEPSSAVFNIIGKLEEQRSSLLQLQEKHGVEISCYL 1085
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
DSQFSGMVEAWASGL+W+EMMMDCA+DDGDLARL+R+TIDLLAQIPKLPD+D LQ NA
Sbjct: 1086 DSQFSGMVEAWASGLSWKEMMMDCAMDDGDLARLIRQTIDLLAQIPKLPDIDPALQSNAK 1145
Query: 909 DASNVMDRPPISELAG 924
A ++MDRPPISEL+G
Sbjct: 1146 TAYDIMDRPPISELSG 1161
>gi|291464071|gb|ADE05573.1| increased size exclusion limit 2 [Nicotiana benthamiana]
Length = 1159
Score = 1459 bits (3777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/915 (76%), Positives = 801/915 (87%), Gaps = 11/915 (1%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVG+ SS+ GL VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 255 SVGVASSDGGLLHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 314
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIGQIHG+TEL+TSS+RPVPLTW+F TKTAL+PLLD+KG MNRKLSLNYLQ S
Sbjct: 315 AGWIGQIHGRTELVTSSKRPVPLTWHFGTKTALVPLLDDKGTSMNRKLSLNYLQYDESAS 374
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
+ YK+ GS+RR SRK N++ LSKN IN IRRSQVPQ+IDTLWHL++RD
Sbjct: 375 ELYKEEGSKRRKSRKR----ENDV------RPLSKNDINNIRRSQVPQIIDTLWHLKARD 424
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
MLPA+WFIF+R+GCDAAVQYLEDC LLDECE SEVELALKRFRI YPDAVR A+KGL +
Sbjct: 425 MLPAVWFIFSRKGCDAAVQYLEDCRLLDECETSEVELALKRFRIQYPDAVRVSAVKGLRR 484
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR SG +
Sbjct: 485 GVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGLV 544
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
QL+SNEL QMAGRAGRRGID +GHVVLVQTPYEG EECCK+LF+G++PLVSQFTASYGMV
Sbjct: 545 QLSSNELLQMAGRAGRRGIDEKGHVVLVQTPYEGPEECCKVLFSGLQPLVSQFTASYGMV 604
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LNLLAGAKV S+E D++K +AGR+LEEARKL+EQSFGNYVGSNVMLAAK+EL +I+K
Sbjct: 605 LNLLAGAKVTRRSSELDEIKVSRAGRTLEEARKLIEQSFGNYVGSNVMLAAKEELARIEK 664
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
E + LTSEIS++AIDRKS++LL++ AY+E+A LQEEL+AEKR RTELRR+MEL+R +LK
Sbjct: 665 EIETLTSEISEEAIDRKSQKLLAQTAYQEIAELQEELRAEKRLRTELRRKMELERVFSLK 724
Query: 491 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA 550
+LK+ E+GHLPF+ L Y DS+GV+H V AVYLGK D+L+ KLK+M D+FAL +
Sbjct: 725 PLLKELEDGHLPFMSLHYSDSDGVQHLVAAVYLGKVDTLNIEKLKSMVRDYDAFALKTVV 784
Query: 551 QS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
++ D +DVKPSY+VALGSDN+WY FTEKWI+ VYR GFPNVALA GDALPRE M+
Sbjct: 785 ENFEVGDIGGEDVKPSYHVALGSDNSWYLFTEKWIRMVYRTGFPNVALALGDALPREIMT 844
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LLDK EM W+KLA SE GGLWC+EGSLETWSWSLNVPVLSSLSE DEVL +S Y+DAV
Sbjct: 845 ELLDKAEMQWQKLAVSELGGLWCLEGSLETWSWSLNVPVLSSLSEEDEVLQLSQAYNDAV 904
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E YK QR KV+RLKK+IARTEGFKEYKKI+D+ KFT+EKI+RLK RSKRL RIEQIEP+
Sbjct: 905 ECYKNQRNKVSRLKKRIARTEGFKEYKKIIDSAKFTQEKIRRLKVRSKRLIGRIEQIEPT 964
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL++SNVIHE+RALDINT VIFPLGETAAAIRGENELWLAMVLRNK+LLDLKPAQL
Sbjct: 965 GWKEFLQVSNVIHESRALDINTHVIFPLGETAAAIRGENELWLAMVLRNKLLLDLKPAQL 1024
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAVC SLVSEGI++R WKNNS +YEPSTTV+NVI++L+E +SS LELQEKHGV+IPCCLD
Sbjct: 1025 AAVCGSLVSEGIRLRPWKNNSFVYEPSTTVLNVIDLLEETKSSILELQEKHGVQIPCCLD 1084
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
SQFSGMVEAWASGLTW+E+MMDCA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ NA
Sbjct: 1085 SQFSGMVEAWASGLTWKEIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPLLQSNAKG 1144
Query: 910 ASNVMDRPPISELAG 924
AS+VMDRPPISELAG
Sbjct: 1145 ASSVMDRPPISELAG 1159
>gi|356497806|ref|XP_003517748.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Glycine max]
Length = 1162
Score = 1434 bits (3713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/918 (76%), Positives = 792/918 (86%), Gaps = 6/918 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVG VSS SGL +VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 247 SVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 306
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIGQIHG+TEL+TSS+RPVPLTW+FS K +LLPLL+EKG HMNRKLSLNYLQL +
Sbjct: 307 AGWIGQIHGETELVTSSKRPVPLTWHFSLKNSLLPLLNEKGTHMNRKLSLNYLQLQAAVA 366
Query: 131 KPYKDGGSRRRNSRKHADMNS-NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
KPYKD SR+RN RK ++ ++ F Q LSKN+INAIRRSQVPQVIDTLW L+SR
Sbjct: 367 KPYKDDWSRKRNPRKRGTLSGYDSDDNMFEQRSLSKNNINAIRRSQVPQVIDTLWQLQSR 426
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+R+GCDAAVQYLE+C LLDECE SEVELALKRFR YPDAVRE A++GLL
Sbjct: 427 DMLPAIWFIFSRKGCDAAVQYLENCKLLDECESSEVELALKRFRKQYPDAVRESAVRGLL 486
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WK+FIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR SGR
Sbjct: 487 EGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGR 546
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
I L+SNEL QMAGRAGRRGID GHVVL+QTP EGAEE CK+LFAG+EPLVSQFTASYGM
Sbjct: 547 IPLSSNELLQMAGRAGRRGIDENGHVVLIQTPNEGAEEGCKVLFAGLEPLVSQFTASYGM 606
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAG K +H SNESD+MK G++LEEARKLVEQSFGNYV SNVMLAAK+E+ KI+
Sbjct: 607 VLNLLAGVKAIHRSNESDNMKP-STGKTLEEARKLVEQSFGNYVSSNVMLAAKEEINKIE 665
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE + L SEI+D+AIDRKSR+ LS YKE+A L E+L+AEKR R+ELR++ E KR SAL
Sbjct: 666 KEIEFLMSEITDEAIDRKSRKALSPRQYKEIAELLEDLRAEKRVRSELRKQKEAKRISAL 725
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K +L++ E+GHLPFLCLQY+DSEGVEHS+PAV+LGK DSL++SKLK+M S DSFALN L
Sbjct: 726 KPLLEEPESGHLPFLCLQYRDSEGVEHSIPAVFLGKVDSLNASKLKDMISSVDSFALN-L 784
Query: 550 AQSNGDDYDTQ---DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRE 606
A + D++ D+KPSY+VALGSDNTWY FTEKWIKTVY GFPNV LA+GDA PRE
Sbjct: 785 ADAEPSVADSELKDDLKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLAEGDARPRE 844
Query: 607 TMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYH 666
MS+LLDK +M W+KL+ SE GGLW MEGSL+TWSWSLNVPVLSSLSE+DE+L S +Y
Sbjct: 845 IMSILLDKEDMKWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLQSQDYK 904
Query: 667 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 726
DA+E YKEQR KV+RLKKKI R+EG+KEY KI+D VKFTEEKIKRLK RSKRL RIEQI
Sbjct: 905 DAIERYKEQRNKVSRLKKKIVRSEGYKEYFKIIDAVKFTEEKIKRLKNRSKRLINRIEQI 964
Query: 727 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 786
EPSGWKEF+++SNVIHE RALDINT +IFPLGETAAAIRGENELWLAMVLRNKILL+LKP
Sbjct: 965 EPSGWKEFMQVSNVIHEIRALDINTHIIFPLGETAAAIRGENELWLAMVLRNKILLELKP 1024
Query: 787 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
AQLAAVCASLVS GIKVR KNNS IYEPS TV I +LDE RS+ L +Q+KH V I C
Sbjct: 1025 AQLAAVCASLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSALLAMQDKHEVTISC 1084
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 906
CLDSQF GMVEAWASGLTWRE+MMDCA+DDGDLARLLRRTIDLL QIPKLPD+D L+ N
Sbjct: 1085 CLDSQFCGMVEAWASGLTWRELMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLKHN 1144
Query: 907 AVDASNVMDRPPISELAG 924
A AS+VMDRPPISEL G
Sbjct: 1145 AKAASSVMDRPPISELVG 1162
>gi|357486299|ref|XP_003613437.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
gi|355514772|gb|AES96395.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
Length = 1201
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/915 (74%), Positives = 775/915 (84%), Gaps = 7/915 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVG VSS SGL +VDVIVLDEVHYLSDISRGTVWEEI+IYCPK VQ+ICLSATVAN DEL
Sbjct: 281 SVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKAVQLICLSATVANPDEL 340
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIGQIHG TEL+TSS+RPVPL W+FS K +LLPLLD+KG MNRKLSLNYL+L +E
Sbjct: 341 AGWIGQIHGGTELVTSSKRPVPLNWHFSLKNSLLPLLDDKGTQMNRKLSLNYLKLQAAEA 400
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTS-FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
KPYKD R+RNSRK S +I Q LSKN INAIRRSQVPQ+IDTLWHL+SR
Sbjct: 401 KPYKDDWPRKRNSRKRGTRTSYDIDDRMLEQRSLSKNDINAIRRSQVPQIIDTLWHLQSR 460
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPA+WFIF+R+GCDAAVQY+EDC LLDECE SEV LALKRFRI YPDAVRE A+KGLL
Sbjct: 461 DMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVLLALKRFRIQYPDAVRETAVKGLL 520
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WK+FIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR+ +GR
Sbjct: 521 QGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDTGR 580
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LTSNEL QMAGRAGRRGID GHVVLVQTP EGAEECCK+LF+G+EPLVSQFTASYGM
Sbjct: 581 TLLTSNELLQMAGRAGRRGIDESGHVVLVQTPNEGAEECCKVLFSGLEPLVSQFTASYGM 640
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLL G K + SN SD+MK +G++L+EARKL+EQSFGNYV S+VMLAAK+EL +I+
Sbjct: 641 VLNLLGGGKALRRSNTSDEMKT-SSGKTLDEARKLIEQSFGNYVSSSVMLAAKEELNRIE 699
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE +L SEI+D+AIDRKSR+ LS+ YKE+A LQE L+AEKR R ELRR+ E KR SAL
Sbjct: 700 KEIQLLMSEITDEAIDRKSRKALSQRQYKEIAELQENLRAEKRIRAELRRQKETKRISAL 759
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K +L++ EN LPFLCLQY+DS+GV+HS+PAV+LGK DSL + KLKNM DSFALN
Sbjct: 760 KPLLEESEN--LPFLCLQYRDSDGVQHSIPAVFLGKVDSLGALKLKNMIGSVDSFALN-- 815
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
++ D +D PSY+VALGSDN+WY FTEKWIKTVY GFP+V L QGD PRE MS
Sbjct: 816 -SADADSELNEDPVPSYHVALGSDNSWYLFTEKWIKTVYETGFPDVPLVQGDTRPREIMS 874
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LLDK +M W+ LA+SE GGLW EGSLETWSWSLNVP LSS SE++EVL S Y DA
Sbjct: 875 DLLDKEDMKWDNLANSEHGGLWVTEGSLETWSWSLNVPGLSSFSENEEVLLKSQAYRDAA 934
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E YK+QR+KVARLKKKI+RTEG KEY KI+D VKF EEKIKR+K RSKRLT RIEQIEPS
Sbjct: 935 EQYKDQRSKVARLKKKISRTEGHKEYNKILDAVKFIEEKIKRMKTRSKRLTNRIEQIEPS 994
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEF+++SNVI ETRALDINT VI+PLGETA+AIRGENELWLAMVLR+KIL +LKPAQL
Sbjct: 995 GWKEFMQVSNVIRETRALDINTHVIYPLGETASAIRGENELWLAMVLRSKILAELKPAQL 1054
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAVCA LVSEGIKVR WKNN+ IYEPS TV+N+I +LDE R++ L +QEKHGV I CCLD
Sbjct: 1055 AAVCAGLVSEGIKVRPWKNNNYIYEPSATVVNIIGLLDEQRNALLTIQEKHGVTISCCLD 1114
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
SQF GMVEAWASGLTWRE+MMDCA+DDGDLARLLRRTIDLLAQIP LPD+D LQKNA
Sbjct: 1115 SQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPNLPDIDPLLQKNARA 1174
Query: 910 ASNVMDRPPISELAG 924
A +VMDRPPISELAG
Sbjct: 1175 ACDVMDRPPISELAG 1189
>gi|449452156|ref|XP_004143826.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
ISE2, chloroplastic-like [Cucumis sativus]
Length = 1193
Score = 1398 bits (3619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/915 (74%), Positives = 782/915 (85%), Gaps = 8/915 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +S SGLF VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 286 SVGMATSASGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 345
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIGQIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKG MNRKLSLNYLQL+ S
Sbjct: 346 AGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGARMNRKLSLNYLQLNASGD 405
Query: 131 KPYKDGGSRRRNSRKHAD-MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
K KD GSRRR ++ + ++ +NI + Q LSKN IN+IRRS VPQVIDTLW L+S+
Sbjct: 406 KFSKDDGSRRRTPKRRGNEISYDNIGSMSRQATLSKNDINSIRRSNVPQVIDTLWQLKSK 465
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPA+WFIF+R+GCDAAVQY++ NLLD+CE SEVELAL++FRI +PDAVRE AIKGLL
Sbjct: 466 DMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCERSEVELALRKFRIQFPDAVRESAIKGLL 525
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV++SLSKR+ +GR
Sbjct: 526 QGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIASLSKRSNNGR 585
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L+ NEL QMAGRAGRRGID +GHVVL+QTPYEGAEECCKLLFAG+EPLVSQFTASYGM
Sbjct: 586 THLSPNELLQMAGRAGRRGIDKKGHVVLLQTPYEGAEECCKLLFAGIEPLVSQFTASYGM 645
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAGAKV H S E D+ KA QA R+LEEARKLVEQSFGNYVGSNVMLAAK+EL KI+
Sbjct: 646 VLNLLAGAKVTHTS-EMDETKAFQAWRTLEEARKLVEQSFGNYVGSNVMLAAKEELVKIE 704
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE ++L EI+D+AIDRKSR+ LS+ AY E+A LQEEL+ EKR RTELR+ ME +R AL
Sbjct: 705 KEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAELQEELRLEKRHRTELRKEMESQRICAL 764
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
+L++ +GHLPFLCLQYKDSEGV+HS+P V LG ++DSSKL NM + S +
Sbjct: 765 NSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVLLG---NMDSSKLGNMFPADSSLSG--- 818
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
A+SN + SYYVALGSDN+WY FTEKWIKTVY+ GFPNVAL++GDALPRE M
Sbjct: 819 AESNLGITLEPGAESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNVALSKGDALPREIMR 878
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LLDK M WEKLADSE G L CMEGSLETWSWSLNVPVL+SLSE+DE+L MS Y +++
Sbjct: 879 SLLDKEGMKWEKLADSELGSLACMEGSLETWSWSLNVPVLNSLSENDELLQMSQSYMESL 938
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
+ YK QR KVARLKK+I++TEGF+EYKKI+D E+KI++LK R KRL+ RI+QIEPS
Sbjct: 939 DRYKVQRNKVARLKKRISKTEGFREYKKILDMANLIEDKIRQLKTRYKRLSNRIQQIEPS 998
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+ISNVIHE RALDINT V+FPLGETAAAIRGENELW+AMVLRNK L+ LKP +L
Sbjct: 999 GWKEFLQISNVIHEIRALDINTHVMFPLGETAAAIRGENELWIAMVLRNKFLVQLKPTEL 1058
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAVCASLVSEGIKVR +NNS I+EPS TVIN+IN L+E R+S +LQEKHGV I CCLD
Sbjct: 1059 AAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSLEDLQEKHGVNISCCLD 1118
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
SQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ+NA
Sbjct: 1119 SQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPSLQRNAST 1178
Query: 910 ASNVMDRPPISELAG 924
AS+VM+RPPISELAG
Sbjct: 1179 ASDVMNRPPISELAG 1193
>gi|449486574|ref|XP_004157336.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Cucumis sativus]
Length = 1168
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 681/915 (74%), Positives = 782/915 (85%), Gaps = 8/915 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +S SGLF VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 261 SVGMATSASGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 320
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIGQIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKG MNRKLSLNYLQL+ S
Sbjct: 321 AGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGARMNRKLSLNYLQLNASGD 380
Query: 131 KPYKDGGSRRRN-SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
K KD GSRRR R+ +++ +NI + Q LSKN IN+IRRS VPQVIDTLW L+S+
Sbjct: 381 KFSKDDGSRRRTPKRRGNEISYDNIGSMSRQATLSKNDINSIRRSNVPQVIDTLWQLKSK 440
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPA+WFIF+R+GCDAAVQY++ NLLD+CE SEVELAL++FRI +PDAVRE AIKGLL
Sbjct: 441 DMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCERSEVELALRKFRIQFPDAVRESAIKGLL 500
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV++SLSKR+ +GR
Sbjct: 501 QGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIASLSKRSNNGR 560
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L+ NEL QMAGRAGRRGID +GHVVL+QTPYEGAEECCKLLFAG+EPLVSQFTASYGM
Sbjct: 561 THLSPNELLQMAGRAGRRGIDKKGHVVLLQTPYEGAEECCKLLFAGIEPLVSQFTASYGM 620
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAGAKV H S E D+ KA QA R+LEEARKLVEQSFGNYVGSNVMLAAK+EL KI+
Sbjct: 621 VLNLLAGAKVTHTS-EMDETKAFQAWRTLEEARKLVEQSFGNYVGSNVMLAAKEELVKIE 679
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE ++L EI+D+AIDRKSR+ LS+ AY E+A LQEEL+ EKR RTELR+ ME +R AL
Sbjct: 680 KEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAELQEELRLEKRHRTELRKEMESQRICAL 739
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
+L++ +GHLPFLCLQYKDSEGV+HS+P V LG ++DSSKL NM + S +
Sbjct: 740 NSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVLLG---NMDSSKLGNMFPADSSLSG--- 793
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
A+SN + SYYVALGSDN+WY FTEKWIKTVY+ GFPNVAL++GDALPRE M
Sbjct: 794 AESNLGITLEPGAESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNVALSKGDALPREIMR 853
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LLDK M WEKLADSE G L CMEGSLETWSWSLNVPVL+SLSE+DE+L MS Y +++
Sbjct: 854 SLLDKEGMKWEKLADSELGSLACMEGSLETWSWSLNVPVLNSLSENDELLQMSQSYMESL 913
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
+ YK QR KVARLKK+I++TEGF+EYKKI+D E+KI++LK R KRL+ RI+QIEPS
Sbjct: 914 DRYKVQRNKVARLKKRISKTEGFREYKKILDMANLIEDKIRQLKTRYKRLSNRIQQIEPS 973
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+ISNVIHE RALDINT V+FPLGETAAAIRGENELW+AMVLRNK L+ LKP +L
Sbjct: 974 GWKEFLQISNVIHEIRALDINTHVMFPLGETAAAIRGENELWIAMVLRNKFLVQLKPTEL 1033
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAVCASLVSEGIKVR +NNS I+EPS TVIN+IN L+E R+S +LQEKHGV I CCLD
Sbjct: 1034 AAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSLEDLQEKHGVNISCCLD 1093
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
SQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ+NA
Sbjct: 1094 SQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPSLQRNAST 1153
Query: 910 ASNVMDRPPISELAG 924
AS+VM+RPPISELAG
Sbjct: 1154 ASDVMNRPPISELAG 1168
>gi|222422993|dbj|BAH19480.1| AT1G70070 [Arabidopsis thaliana]
Length = 1171
Score = 1394 bits (3607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/916 (72%), Positives = 783/916 (85%), Gaps = 2/916 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 256 SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 315
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE
Sbjct: 316 AGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEA 375
Query: 131 KPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ D G R+R S+K S N + + + LSKN IN IRRSQVPQ+ DTLWHL+ +
Sbjct: 376 RFRDDDDGYRKRRSKKRGGNTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGK 435
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
+MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGLL
Sbjct: 436 NMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLL 495
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+ + R
Sbjct: 496 RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNER 555
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
I+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYGM
Sbjct: 556 IELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGM 615
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I
Sbjct: 616 VLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEID 675
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+RF AL
Sbjct: 676 NKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLAL 735
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFALN +
Sbjct: 736 KPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNLI 795
Query: 550 AQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE M
Sbjct: 796 EDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREIM 855
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +A
Sbjct: 856 KNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDNA 915
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
+ YKEQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+RL R+EQIEP
Sbjct: 916 AQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIEP 975
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
SGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP Q
Sbjct: 976 SGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPPQ 1035
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V IPCCL
Sbjct: 1036 LAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMIPCCL 1095
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
D QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ++A
Sbjct: 1096 DVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSAA 1155
Query: 909 DASNVMDRPPISELAG 924
A+++MDRPPISELAG
Sbjct: 1156 AAADIMDRPPISELAG 1171
>gi|15223032|ref|NP_177164.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25;
AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2;
AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags:
Precursor
gi|332196892|gb|AEE35013.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
Length = 1171
Score = 1393 bits (3606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/917 (72%), Positives = 786/917 (85%), Gaps = 4/917 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 256 SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 315
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE
Sbjct: 316 AGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEA 375
Query: 131 K--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
+ DG +RR+ ++ D + NN+V + + LSKN IN IRRSQVPQ+ DTLWHL+
Sbjct: 376 RFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWHLQG 434
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGL
Sbjct: 435 KNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGL 494
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
L+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+ +
Sbjct: 495 LRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNE 554
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYG
Sbjct: 555 RIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYG 614
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
MVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I
Sbjct: 615 MVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEI 674
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+RF A
Sbjct: 675 DNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLA 734
Query: 489 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 548
LK +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFALN
Sbjct: 735 LKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNL 794
Query: 549 LAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
+ D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE
Sbjct: 795 IEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREI 854
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +
Sbjct: 855 MKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDN 914
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
A + YKEQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+RL R+EQIE
Sbjct: 915 AAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIE 974
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
PSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP
Sbjct: 975 PSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPP 1034
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V IPCC
Sbjct: 1035 QLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMIPCC 1094
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
LD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ++A
Sbjct: 1095 LDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSA 1154
Query: 908 VDASNVMDRPPISELAG 924
A+++MDRPPISELAG
Sbjct: 1155 AAAADIMDRPPISELAG 1171
>gi|297841743|ref|XP_002888753.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
gi|297334594|gb|EFH65012.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
Length = 1178
Score = 1368 bits (3540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/916 (72%), Positives = 781/916 (85%), Gaps = 2/916 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 263 SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 322
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIG+IHGKTEL+TS+RRPVPLTW+FSTK +LLPLLDEKG ++NRKLSLNYLQLS SE
Sbjct: 323 AGWIGEIHGKTELVTSTRRPVPLTWFFSTKHSLLPLLDEKGTNVNRKLSLNYLQLSASEA 382
Query: 131 KPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ D G R+R S+K S N + + + LSKN IN IRRSQVPQ+ DTLWHL+ +
Sbjct: 383 RFRDDDDGYRKRRSKKRVGDTSYNSLVNITDYPLSKNEINKIRRSQVPQISDTLWHLQGK 442
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGLL
Sbjct: 443 DMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLL 502
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSL+K+ + R
Sbjct: 503 RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLTKKAGNER 562
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
IQL NELFQMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYGM
Sbjct: 563 IQLGPNELFQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGM 622
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK+EL +I
Sbjct: 623 VLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKEELAEID 682
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
K+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E+RRRMEL RFSAL
Sbjct: 683 KKIEILSSEISDEAIDKKSRKLLSARDYKEITELKEELREEKRKRAEVRRRMELARFSAL 742
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K +LK E G+LPF+CL++KDSE + SVPA+YLG DS SKL+ M S+++SFALN +
Sbjct: 743 KPLLKGMEEGNLPFICLEFKDSEERQQSVPAIYLGHIDSFQGSKLQKMMSLDESFALNVI 802
Query: 550 A-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
+ D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN++LA GDALPRE M
Sbjct: 803 EDEPAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNISLALGDALPREIM 862
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +A
Sbjct: 863 KTLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDNA 922
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
E YKEQR KV RLKKK++R+ GF+EYKKI++ T EK+KRLKARS+RL R+EQIEP
Sbjct: 923 TEQYKEQRRKVFRLKKKMSRSAGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIEP 982
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
SGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP +
Sbjct: 983 SGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPPE 1042
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ R S ++LQEKH V IPCCL
Sbjct: 1043 LAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRISLIKLQEKHEVMIPCCL 1102
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
D QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ++A
Sbjct: 1103 DVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSAA 1162
Query: 909 DASNVMDRPPISELAG 924
A+++MDRPPISELAG
Sbjct: 1163 AAADIMDRPPISELAG 1178
>gi|2194131|gb|AAB61106.1| Similar to Synechocystis antiviral protein (gb|D90917) [Arabidopsis
thaliana]
Length = 1198
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/920 (68%), Positives = 753/920 (81%), Gaps = 33/920 (3%)
Query: 37 DISRGTVWEEII-------------IYCPKEVQIICLSA--TVANADELAGWIGQ----- 76
D GTVWEEI+ +Y +++ + +VAN DELAGWIG+
Sbjct: 280 DFFMGTVWEEIVSFFSHCFSSFLQRLYLLSVSKLVSVFQIRSVANPDELAGWIGEQLIYC 339
Query: 77 ---------IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST 127
IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS
Sbjct: 340 FADEVSQFLIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSA 399
Query: 128 SEVK--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 185
SE + DG +RR+ ++ D + NN+V + + LSKN IN IRRSQVPQ+ DTLWH
Sbjct: 400 SEARFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWH 458
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245
L+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A
Sbjct: 459 LQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAE 518
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+
Sbjct: 519 KGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKA 578
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTA
Sbjct: 579 GNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTA 638
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
SYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL
Sbjct: 639 SYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQEL 698
Query: 426 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 485
+I + ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+R
Sbjct: 699 AEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELER 758
Query: 486 FSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFA 545
F ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFA
Sbjct: 759 FLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFA 818
Query: 546 LNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALP 604
LN + D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALP
Sbjct: 819 LNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALP 878
Query: 605 RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFE 664
RE M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS E
Sbjct: 879 REIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEE 938
Query: 665 YHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIE 724
Y +A + YKEQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+RL R+E
Sbjct: 939 YDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLE 998
Query: 725 QIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDL 784
QIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DL
Sbjct: 999 QIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDL 1058
Query: 785 KPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 844
KP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V I
Sbjct: 1059 KPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMI 1118
Query: 845 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 904
PCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ
Sbjct: 1119 PCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQ 1178
Query: 905 KNAVDASNVMDRPPISELAG 924
++A A+++MDRPPISELAG
Sbjct: 1179 RSAAAAADIMDRPPISELAG 1198
>gi|357138189|ref|XP_003570680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Brachypodium distachyon]
Length = 1168
Score = 1277 bits (3305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/915 (67%), Positives = 744/915 (81%), Gaps = 6/915 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +S+ LF+VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 259 SVGMTASQGRLFEVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 318
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ-LSTSE 129
AGWIGQIHGKTEL+TS+RRPVPLTW+FS K ALLPLLD KGK MNRKL +++ Q +S+ +
Sbjct: 319 AGWIGQIHGKTELVTSNRRPVPLTWHFSKKFALLPLLDGKGKKMNRKLRMSHSQNISSPK 378
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ Y G R+ + K+ + + + Q QLSK+ + +RRSQVP + DTL L
Sbjct: 379 SEFYYVKGKRKLRTNKNEQQGNRSPLDISKQVQLSKHEVTNMRRSQVPLIRDTLSQLWEN 438
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL L+RFR+ YPDA+RE A+KGL+
Sbjct: 439 DMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELRRFRMQYPDAIRENAVKGLM 498
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR +GR
Sbjct: 499 RGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRIDAGR 558
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LT N LFQMAGRAGRRGID GH VLVQTP EG EECC ++FAG+EPLVSQFTASYGM
Sbjct: 559 QLLTPNNLFQMAGRAGRRGIDTVGHSVLVQTPNEGPEECCDVIFAGLEPLVSQFTASYGM 618
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAG+KV H ES D+KA ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+EL + Q
Sbjct: 619 VLNLLAGSKVTHNQKESGDVKAKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERTQ 678
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
KE L+SEI+D+ IDR+ R LSE Y E++ LQ++ K EK+ R EL++RMEL+R +A
Sbjct: 679 KEIQYLSSEITDEFIDRRCREELSEEDYAEISLLQKKFKEEKQIRNELKKRMELERMAAW 738
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K L++FE+GHLPF+CLQYKD + V H++PAV++G S D K+++M + +
Sbjct: 739 KTRLEEFESGHLPFMCLQYKDKDSVHHTIPAVFIGSLSSFDDQKIESMLEDDSISPGKQE 798
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
S G+ Y PSYYVAL SDN+WY FTEKWIKTVYR G P + +G LPRET+
Sbjct: 799 VDSGGELY-----YPSYYVALSSDNSWYLFTEKWIKTVYRTGLPALPSVEGGTLPRETLK 853
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LL + +M+W+++A SE+G L CM+GSL+TWSWSLNVPVL+SLSE +EV S E+ AV
Sbjct: 854 QLLLREDMMWDQVAKSEYGSLSCMDGSLDTWSWSLNVPVLNSLSEDNEVERFSQEHQTAV 913
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E +K+QR KV++LKK I T+GF+E++KI+D FT+EKI+RL+ARS+RLT+RI QIEP+
Sbjct: 914 ECHKQQRRKVSQLKKTIRSTKGFREFQKIIDRRNFTKEKIERLEARSRRLTRRIMQIEPT 973
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+IS VI E R LDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+QL
Sbjct: 974 GWKEFLQISKVIQEARVLDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQL 1033
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAVC SLVSEGIK+R WKN+S +YEPS+ V VIN LDE R+S +ELQEKHGV+IPC +D
Sbjct: 1034 AAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLDEQRNSLIELQEKHGVKIPCEID 1093
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRT+DLLAQIPKLPD+D LQKNA
Sbjct: 1094 TQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTMDLLAQIPKLPDIDPVLQKNAQI 1153
Query: 910 ASNVMDRPPISELAG 924
A NVMDR P+SELAG
Sbjct: 1154 ACNVMDRVPLSELAG 1168
>gi|115448571|ref|NP_001048065.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|46390556|dbj|BAD16042.1| putative helicase [Oryza sativa Japonica Group]
gi|113537596|dbj|BAF09979.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|215704690|dbj|BAG94318.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1179
Score = 1266 bits (3277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/915 (68%), Positives = 747/915 (81%), Gaps = 7/915 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 271 SVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 330
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ-LSTSE 129
AGWIGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK MNRKL +++ Q LS+ +
Sbjct: 331 AGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPK 390
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ Y G R+ + K+ N + + S Q QLSK+ + +RRSQVP + DTL L
Sbjct: 391 SEFYYVKGKRKLRTTKNEQGNRSPLDIS-KQVQLSKHELTNMRRSQVPLIRDTLSQLWEN 449
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR+ YPDA+RE A+KGLL
Sbjct: 450 DMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLL 509
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPART+V+SSLSKR +GR
Sbjct: 510 RGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGR 569
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LT NELFQMAGRAGRRGID GH VLVQT YEG EECC ++FAG+EPLVSQFTASYGM
Sbjct: 570 QLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGM 629
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+EL +IQ
Sbjct: 630 VLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQ 689
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
E L+SEI+D++IDRK R LSE Y E++ LQ++LK EK+ R EL++RMEL+R A
Sbjct: 690 SEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLKEEKQMRNELKKRMELERMVAW 749
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
K L++FE+GHLPF+CLQYKD + V+H++PAV++G S K+ ++ NDS +
Sbjct: 750 KTRLEEFESGHLPFMCLQYKDKDSVQHTIPAVFIGSLSSFADQKIVSLVE-NDS----PV 804
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
A D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P V A+G LPRET+
Sbjct: 805 AGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLK 864
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LL + +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLSE DEV S E+ DAV
Sbjct: 865 QLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAV 924
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E +K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+ARS+RLT+RI QIEP+
Sbjct: 925 ECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPT 984
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+QL
Sbjct: 985 GWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQL 1044
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S ++LQEKH V+IPC +D
Sbjct: 1045 AAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSLVDLQEKHSVKIPCEID 1104
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQIPKLPD+D LQKNA
Sbjct: 1105 AQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQIPKLPDIDPVLQKNAQI 1164
Query: 910 ASNVMDRPPISELAG 924
A N+MDR PISELAG
Sbjct: 1165 ACNIMDRVPISELAG 1179
>gi|242066050|ref|XP_002454314.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
gi|241934145|gb|EES07290.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
Length = 1173
Score = 1264 bits (3272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/916 (68%), Positives = 750/916 (81%), Gaps = 8/916 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 264 SVGMTASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 323
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL-NYLQLSTSE 129
AGWI QIHGKTEL+TS++RPVPLTW+FS K +L PLLD KGK MNRKL + N+ L++ +
Sbjct: 324 AGWISQIHGKTELVTSNKRPVPLTWHFSKKYSLQPLLDGKGKKMNRKLRMSNFQNLASPK 383
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ Y G RR + K NS++ S Q QLSK+ ++ +RRSQVP + DTL L
Sbjct: 384 SEFYYVKGKRRFRTNKIEQGNSSSFDIS-KQVQLSKHELSNMRRSQVPLIRDTLSQLWEN 442
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL L+RF++ YPDAVRE A+KGLL
Sbjct: 443 DMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELRRFKMQYPDAVRESAVKGLL 502
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR +GR
Sbjct: 503 RGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRIDAGR 562
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LT NELFQMAGRAGRRGID GH VLVQTPYEG EECC ++FAG+EPLVSQFTASYGM
Sbjct: 563 QLLTPNELFQMAGRAGRRGIDTVGHTVLVQTPYEGPEECCDIIFAGLEPLVSQFTASYGM 622
Query: 370 VLNLLAGAKVMHLSNESDDM-KALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
VLNLLAG+KV H ESDD+ K ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+E+ +I
Sbjct: 623 VLNLLAGSKVTHNQKESDDVNKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEEIERI 682
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
Q+E L+SEI+D++ DRK R LSE Y E++ LQ+ LK EK+ R EL+++MEL+R +A
Sbjct: 683 QQEIQYLSSEITDESTDRKCREELSEEDYAEISLLQKRLKEEKQIRNELKKKMELERMAA 742
Query: 489 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 548
K+ L++FENGHLPF+CLQYKD + ++H++PAV++G +S K+ NM +DS +
Sbjct: 743 WKNRLEEFENGHLPFMCLQYKDKDSIQHTIPAVFIGNLNSFADQKITNMVE-DDSLVSGK 801
Query: 549 LAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
+G+ Q PSYYVAL SDN+WY FTEKWIKTVY+ G P VA +G ALPRET+
Sbjct: 802 QKLDSGE----QLYCPSYYVALSSDNSWYLFTEKWIKTVYKTGLPAVASIEGGALPRETL 857
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
LL + E++W+K+A SE+G L M+GSL+TWSWSLNVPVL+SLSE DEV S E+ DA
Sbjct: 858 KQLLLREELMWDKVAKSEYGSLLSMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHRDA 917
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
VE YK+QR KV+ LKK I T+GFKE++KI+D FT+EKI+RL+ARS+RLT+RI QIEP
Sbjct: 918 VECYKQQRRKVSHLKKTIRSTKGFKEFQKIIDIRNFTKEKIERLEARSRRLTRRIRQIEP 977
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
+GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+Q
Sbjct: 978 TGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQ 1037
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAVC SLVSEGIK R WKN+S +YEPS+ VI VI+ L+E R+S ++LQE+HGV+IPC +
Sbjct: 1038 LAAVCGSLVSEGIKFRPWKNSSYVYEPSSVVIGVISYLEEQRNSLIDLQERHGVKIPCEI 1097
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRR+IDLLAQIPKLPD+D LQKNA
Sbjct: 1098 DAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRSIDLLAQIPKLPDIDPVLQKNAQ 1157
Query: 909 DASNVMDRPPISELAG 924
A +VMDR PISELAG
Sbjct: 1158 IACSVMDRVPISELAG 1173
>gi|222623644|gb|EEE57776.1| hypothetical protein OsJ_08317 [Oryza sativa Japonica Group]
Length = 1140
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/915 (66%), Positives = 716/915 (78%), Gaps = 46/915 (5%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 271 SVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 330
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ-LSTSE 129
AGWIGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK MNRKL +++ Q LS+ +
Sbjct: 331 AGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPK 390
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ Y G R+ + K+ N + + S Q QLSK+ + +RRSQVP + DTL L
Sbjct: 391 SEFYYVKGKRKLRTTKNEQGNRSPLDIS-KQVQLSKHELTNMRRSQVPLIRDTLSQLWEN 449
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR+ YPDA+RE A+KGLL
Sbjct: 450 DMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLL 509
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPART+V+SSLSKR +GR
Sbjct: 510 RGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGR 569
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LT NELFQMAGRAGRRGID GH VLVQT YEG EECC ++FAG+EPLVSQFTASYGM
Sbjct: 570 QLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGM 629
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+EL +IQ
Sbjct: 630 VLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQ 689
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
E L+SEI+D++IDRK R LSE Y E++ LQ++LK
Sbjct: 690 SEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLK--------------------- 728
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
YKD + V+H++PAV++G S K+ ++ NDS +
Sbjct: 729 ------------------YKDKDSVQHTIPAVFIGSLSSFADQKIVSLVE-NDS----PV 765
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
A D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P V A+G LPRET+
Sbjct: 766 AGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLK 825
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LL + +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLSE DEV S E+ DAV
Sbjct: 826 QLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAV 885
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E +K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+ARS+RLT+RI QIEP+
Sbjct: 886 ECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPT 945
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+QL
Sbjct: 946 GWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQL 1005
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S ++LQEKH V+IPC +D
Sbjct: 1006 AAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSLVDLQEKHSVKIPCEID 1065
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQIPKLPD+D LQKNA
Sbjct: 1066 AQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQIPKLPDIDPVLQKNAQI 1125
Query: 910 ASNVMDRPPISELAG 924
A N+MDR PISELAG
Sbjct: 1126 ACNIMDRVPISELAG 1140
>gi|218191542|gb|EEC73969.1| hypothetical protein OsI_08870 [Oryza sativa Indica Group]
Length = 1065
Score = 1197 bits (3097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/915 (65%), Positives = 716/915 (78%), Gaps = 46/915 (5%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DEL
Sbjct: 196 SVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDEL 255
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ-LSTSE 129
AGWIGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK MNRKL +++ Q LS+ +
Sbjct: 256 AGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPK 315
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ Y G R+ + ++ N + + S Q QLSK+ + +RRSQVP + DTL L
Sbjct: 316 SEFYYVKGKRKLRTTENEQGNRSPLDIS-KQVQLSKHELTNMRRSQVPLIRDTLSQLWEN 374
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR+ YPDA+RE A+KGLL
Sbjct: 375 DMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLL 434
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPART+V+SSLSKR +GR
Sbjct: 435 RGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGR 494
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LT NELFQMAGRAGRRGID GH VLVQT YEG EECC ++FAG+EPLVSQFTASYGM
Sbjct: 495 QLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGM 554
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
VLNLLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+EL +IQ
Sbjct: 555 VLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQ 614
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
E L+SEI+D++IDRK R LSE Y E++ LQ++LK
Sbjct: 615 SEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLK--------------------- 653
Query: 490 KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL 549
YKD + V+H++PAV++G S K+ ++ NDS +
Sbjct: 654 ------------------YKDKDSVQHTIPAVFIGSLSSFADQKIVSLVE-NDS----PV 690
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
A D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P V A+G LPRET+
Sbjct: 691 AGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLK 750
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
LL + +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLSE DEV S E+ DAV
Sbjct: 751 QLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAV 810
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
E +K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+ARS+RLT+RI QIEP+
Sbjct: 811 ECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPT 870
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+QL
Sbjct: 871 GWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQL 930
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S ++LQEKH V+IPC +D
Sbjct: 931 AAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSLVDLQEKHSVKIPCEID 990
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQIPKLPD+D LQKNA
Sbjct: 991 AQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQIPKLPDIDPVLQKNAQI 1050
Query: 910 ASNVMDRPPISELAG 924
A N+MDR PISELAG
Sbjct: 1051 ACNIMDRVPISELAG 1065
>gi|224110980|ref|XP_002315703.1| predicted protein [Populus trichocarpa]
gi|222864743|gb|EEF01874.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/736 (77%), Positives = 648/736 (88%), Gaps = 2/736 (0%)
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
MLPAIWFIFNRRGCDAAVQYLE C LLDECE SEVELALKRF + PDAVRE A+KGLL+
Sbjct: 1 MLPAIWFIFNRRGCDAAVQYLEGCRLLDECEASEVELALKRFSVQNPDAVRETAVKGLLR 60
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVAAHHAGCLP+WKSFIEELFQRGL+KVVFATETLAAGINMPARTAV+SSLS+R++SGRI
Sbjct: 61 GVAAHHAGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSRRSSSGRI 120
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
L+ NEL QMAGRAGRRGID RGHVVLVQ EGAEECCKLLFAG+EPLVSQFTASYGMV
Sbjct: 121 PLSPNELLQMAGRAGRRGIDERGHVVLVQASNEGAEECCKLLFAGLEPLVSQFTASYGMV 180
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LNLLAGAK+ SNES++MK LQAGR+L+EARKLVE+SFG Y+GSNVMLA+K+EL KIQK
Sbjct: 181 LNLLAGAKITRRSNESNEMKVLQAGRTLKEARKLVEKSFGTYIGSNVMLASKEELAKIQK 240
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
E ++LTSE SDDAIDRKSR++LS+ AYKE+A LQE+L+ EKR RTELRR+ME KR +ALK
Sbjct: 241 EIEMLTSETSDDAIDRKSRKILSDGAYKEIAILQEQLREEKRLRTELRRKMETKRLNALK 300
Query: 491 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA 550
+LK+ N LPFLCL+YKDSEGVEHSVPAVYLG DS D SK KNM S DS A N
Sbjct: 301 ILLKELGNDRLPFLCLKYKDSEGVEHSVPAVYLGNADSFDGSKFKNMVSDIDSLAQNVAP 360
Query: 551 -QSNGDDYDT-QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
+SN + +T +DV+PSY+VALGSDN+WY FTEKWIKTVYR G PNVAL+ GD LP E M
Sbjct: 361 IESNVSEVETHKDVEPSYHVALGSDNSWYLFTEKWIKTVYRTGLPNVALSLGDDLPHEVM 420
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
+LLD+ E WEKLA+SE GGLW MEGSLETWSWSLNVPVL+SLSE DEVLHMS YHDA
Sbjct: 421 WMLLDREEKQWEKLAESELGGLWYMEGSLETWSWSLNVPVLNSLSEIDEVLHMSQAYHDA 480
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
VE+YK+QR KVARLKK IARTEGFKEYK+I+D FTE+KIKRLK RS RL++R+++IEP
Sbjct: 481 VESYKDQRNKVARLKKTIARTEGFKEYKRILDWKNFTEDKIKRLKMRSNRLSERLQEIEP 540
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
SGWKEFL+ISNV+HE+RALDINTQVIFPLGETAAAIRGENELWLAMVLR++ILLDLKP Q
Sbjct: 541 SGWKEFLKISNVVHESRALDINTQVIFPLGETAAAIRGENELWLAMVLRSRILLDLKPGQ 600
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAVCAS+VSEGIKVR W+NN+ IYEPS+ VINVIN+L+E RS+ +LQEKHGVEI CCL
Sbjct: 601 LAAVCASVVSEGIKVRAWENNNYIYEPSSAVINVINILNEQRSNLSKLQEKHGVEITCCL 660
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
DSQFSGMVEAWA+GLTW+EMMMDCA+DDGDLARLLRRTID+LAQIPKLPD+D LQ NA
Sbjct: 661 DSQFSGMVEAWAAGLTWKEMMMDCAMDDGDLARLLRRTIDILAQIPKLPDIDPVLQSNAK 720
Query: 909 DASNVMDRPPISELAG 924
AS++MDRPPISEL G
Sbjct: 721 TASSIMDRPPISELTG 736
>gi|14423540|gb|AAK62452.1|AF387007_1 Similar to Synechocystis antiviral protein [Arabidopsis thaliana]
Length = 916
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/661 (71%), Positives = 556/661 (84%), Gaps = 4/661 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 256 SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 315
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE
Sbjct: 316 AGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEA 375
Query: 131 K--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
+ DG +RR+ ++ D + NN+V + + LSKN IN IRRSQVPQ+ DTLWHL+
Sbjct: 376 RFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWHLQG 434
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGL
Sbjct: 435 KNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGL 494
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
L+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+ +
Sbjct: 495 LRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNE 554
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYG
Sbjct: 555 RIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYG 614
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
MVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I
Sbjct: 615 MVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEI 674
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+RF A
Sbjct: 675 DNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLA 734
Query: 489 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 548
LK +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFALN
Sbjct: 735 LKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNL 794
Query: 549 LAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
+ D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE
Sbjct: 795 IEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREI 854
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +
Sbjct: 855 MKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDN 914
Query: 668 A 668
A
Sbjct: 915 A 915
>gi|168047391|ref|XP_001776154.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672529|gb|EDQ59065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1025
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/939 (49%), Positives = 624/939 (66%), Gaps = 34/939 (3%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVG + L +VDV+VLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN +EL
Sbjct: 96 SVGNMEDGGRLMNVDVVVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPEEL 155
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL---------- 120
AGWI Q+HG TEL+TSSRRPVPL W+FST+ L PLL+E+G MN +L+L
Sbjct: 156 AGWIAQVHGPTELVTSSRRPVPLVWHFSTRYGLNPLLNEQGDEMNWRLNLKKIERERVSD 215
Query: 121 ------NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
+Y + + K + G + + + + +N + ++S + +RR
Sbjct: 216 PFWDELDYDSPTRKQRKFLRAGKAPKESGNRSERRRRSNGGWGETEEKMSDEEVQFLRRK 275
Query: 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI 234
QVPQ+ DTL L+ RDMLPAIWFIF+RRGCD AV YL +LL E V AL FR
Sbjct: 276 QVPQIRDTLNQLKERDMLPAIWFIFSRRGCDLAVHYLLGTDLLTIEEQRRVRKALDNFRE 335
Query: 235 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
+PD+VRE A+K LL GVAAHHAGCLP WK+FIEELFQ+GL+KVVFATETLAAGINMPAR
Sbjct: 336 QHPDSVREVAVKPLLHGVAAHHAGCLPTWKAFIEELFQQGLIKVVFATETLAAGINMPAR 395
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL+SLSKR +G L++N + QMAGRAGRRGID +GH V+VQTP+EGAE+CCKLLFA
Sbjct: 396 TTVLASLSKRGDNGHQLLSANSMLQMAGRAGRRGIDEQGHTVVVQTPFEGAEDCCKLLFA 455
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
G +PLVSQFTA+YGM LNLLAGA+V + ES ++ ++ GRSL+EAR L+E+SFGNYVG
Sbjct: 456 GPDPLVSQFTATYGMALNLLAGARV-KTTTESGAVEMVKVGRSLDEARALIEKSFGNYVG 514
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 474
S VM+AAK +L ++QK+ + L + + D D +SR L+ +E +L+E+ K KRF
Sbjct: 515 SEVMVAAKQQLARLQKDIEYLEKDYTVDD-DLESR--LTRDELQEYLDLKEKAKEAKRFM 571
Query: 475 TELRRRMELKRFSALKDILKDFENGHLPFLCLQ-YKDSEGVEHSVPAVYLGKFDSLD-SS 532
E RR +E R + ++ +L +G PF+CL Y+ G E VPA+++G S
Sbjct: 572 REQRREVEQMRVAMVQPLLDAPTDGKPPFICLSFYEHRTGEERRVPALFVGCVPRPPFVS 631
Query: 533 KLKNMAS---INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR 589
L N+AS ++ F N +S+ +D + DV +YVALGSDN WY FT + +K+V+
Sbjct: 632 DLVNLASEKGQSEEFNDNHDEESSTEDDNDPDV--LHYVALGSDNAWYMFTARSVKSVHT 689
Query: 590 IGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADS---EFGGLWCMEGSLETWSWSLNV 646
A G E + L G WE L S G +W + S++TW W V
Sbjct: 690 NSVNFGASTPGGKPVEELLKEKLQVGIRKWENLGRSGSGPLGCVWSADSSIDTWGWGCQV 749
Query: 647 PVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE 706
PVLS LS + EV S + A ++R + ++L+KK+ +T+G++E +K+VD +
Sbjct: 750 PVLSELSGAHEV---SLDLVKAERVLLDRRKEASKLRKKLKQTQGYRESRKLVDLQRSRF 806
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
+K++R+ A++ R++ RI Q++PSGWKEFL++ V+ E AL +T ++ PLGE AA+ RG
Sbjct: 807 DKLQRITAKANRISNRISQMQPSGWKEFLQVVKVLQEAGALKPDTNLLTPLGEVAASTRG 866
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN-NSSIYEPSTTVINVINV 825
NELWLA+V + IL + PAQLAA CA LVS+G+K R SSIY+ S V
Sbjct: 867 VNELWLAIVFTSGILNSIAPAQLAAACACLVSDGMKARSKDGPTSSIYDASDAVNEWAEN 926
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
++E RS + Q KHGV I ++++F+G+VEAWA+G+TW+E+M D +D+GD+ARLLRR
Sbjct: 927 MEEARSWLVRTQSKHGVAISVEINTEFAGLVEAWAAGVTWKELMDDIEMDEGDVARLLRR 986
Query: 886 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 924
+IDLLAQIP LP +D L +A +ASN+MDRPPISEL G
Sbjct: 987 SIDLLAQIPHLPHIDPNLAMSAREASNIMDRPPISELLG 1025
>gi|168044682|ref|XP_001774809.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673833|gb|EDQ60350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1036
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/942 (44%), Positives = 599/942 (63%), Gaps = 64/942 (6%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVG + + L DVD IVLDEVHYLSDISRGTVWEE IIYCPK+VQ+ICLSATVAN DEL
Sbjct: 127 SVGSSAGKGWLTDVDAIVLDEVHYLSDISRGTVWEETIIYCPKDVQLICLSATVANPDEL 186
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-RKLSLNYLQ---LS 126
AGWI ++HG T+LIT+S+RPVPL W+FST+ ALLPLL+E+ MN +++ ++Y
Sbjct: 187 AGWITKVHGPTQLITASKRPVPLQWHFSTRQALLPLLNEESTAMNPKRMFMDYFGEELYK 246
Query: 127 TSEVKPYKD----GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ P + GG R SR + + +LS+ + +RR QVP+++DT
Sbjct: 247 NDQPSPLRTKTGFGGKDRGESRTQKGKDI--------EKKLSEEQLMFLRRKQVPKIMDT 298
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPA+WFIF+R+GCDAAV Y+++CNLL + E+ +V+ AL+ ++ +PDA+R
Sbjct: 299 LMQLKERDMLPAMWFIFSRKGCDAAVSYVQECNLLSDDEVKQVQEALREYQHQHPDAIRH 358
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++K LL+G AAHHAGCLP WK+FIEELFQ+GLVKVVF TETLAAG+NMP RT+V+SS+S
Sbjct: 359 RSVKALLQGAAAHHAGCLPTWKAFIEELFQKGLVKVVFTTETLAAGVNMPTRTSVISSMS 418
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KR+ G L+SN + QMAGRAGRRGID++GHVV+VQTP+EGAE+ C++LFAG EPLVSQ
Sbjct: 419 KRSNDGLALLSSNAMLQMAGRAGRRGIDDQGHVVVVQTPFEGAEDFCEVLFAGPEPLVSQ 478
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDD---MKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
FT +YGMVLNLLAG +V L +S + ++ + RSLEE LV+QSFGN+VGS+V++
Sbjct: 479 FTTTYGMVLNLLAGPRVAILEEKSHNDERVRMTRRPRSLEEVNALVDQSFGNFVGSDVLV 538
Query: 420 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
+A+ L +++E + L +EI+ + + L++ +E L + + ++ +R
Sbjct: 539 SAQQHLTSLRQEIERLQAEITSEGFFSCLAKELNKKQLQEYTALSKRVAKSQQQLQHIRE 598
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDS-EGVEHSVPAVYLGKFDSL----DSSKL 534
+M ++RF D LPFLC+++KD G E VP V +G SL D+ L
Sbjct: 599 KM-VERFIGSDD-------NPLPFLCVEFKDQMTGEERVVPVVCIGSSPSLTVETDTQGL 650
Query: 535 KNMAS-INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR---I 590
+ AS I +A+ S+YV LGSDN WY FT +K+V+ I
Sbjct: 651 MSTASNIEGGYAIGSAI--------------SHYVGLGSDNYWYMFTGGSVKSVHNNLLI 696
Query: 591 GFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFG---GLWCMEGSLETWSWSLNVP 647
N A RE + + G ++W K+ +S +W E +T++W+ VP
Sbjct: 697 SSTNSAGECVGTFLRERLRI----GLLVWAKVGESGTSSCHAVWNGESGADTFAWACQVP 752
Query: 648 VLSSLSESDEV-------LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVD 700
L++ +V L S + +A + + V +L KK+ +T+G+++YK ++D
Sbjct: 753 SAHELAKEWQVIFICISTLQGSSDLVNAEKTLANHKEDVVKLTKKLKQTQGYRKYKLLLD 812
Query: 701 TVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGET 760
+ +KI LK+ + + R++ + PS W++FL + +V+ E AL ++ + PLGET
Sbjct: 813 LQQKRRKKITNLKSTASDIANRMKDLRPSEWQDFLHVMSVLQEAGALSADSNSLLPLGET 872
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
AA +RG NELWL + + L+PAQLAA C +LVSEG+K R N S Y S V
Sbjct: 873 AAVVRGTNELWLTLAVTRDATYSLEPAQLAAACGALVSEGMKTRNKSNTSMKYSESRGVR 932
Query: 821 NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ + +++ R L LQ HGVEIP LD F+G++EAWASG++W+E++ C +D+GD A
Sbjct: 933 DWVIKMEDLREWVLRLQASHGVEIPVLLDKSFAGILEAWASGVSWQELIEHCDMDEGDAA 992
Query: 881 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
RLLR+T+DL++QIP LP +D +++ NA A MDR PISEL
Sbjct: 993 RLLRKTLDLVSQIPYLPHIDPKIETNARAAQAAMDRSPISEL 1034
>gi|302768241|ref|XP_002967540.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
gi|300164278|gb|EFJ30887.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
Length = 1889
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/926 (43%), Positives = 560/926 (60%), Gaps = 87/926 (9%)
Query: 8 FSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI--IIYCPKEVQIICLSATVA 65
F S G +E L D+DV+VLDE+HY+SD++RGTVWEE +IYCPK ++++CLSAT+A
Sbjct: 1041 FYLSAG---NEDVLQDLDVVVLDEIHYISDLTRGTVWEETARVIYCPKRIKLVCLSATIA 1097
Query: 66 NADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL 125
N DELAGWI ++HG TELITS RRPVPLTW+ S ++ +LPLL+EKG +NRKL ++ QL
Sbjct: 1098 NPDELAGWIAKVHGPTELITSYRRPVPLTWHISRRSQMLPLLNEKGTAINRKLLIDKKQL 1157
Query: 126 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 185
EV NSRK S ++++ + + R QVP++ DTL
Sbjct: 1158 E--EV-----------NSRKIRGRIST-------LEKMTEEQLQVLLRVQVPRISDTLKQ 1197
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245
+ R MLPAIWFI +RR CD AVQYL+ NLL E E +++LALK FR YPDA+RE A+
Sbjct: 1198 MVERTMLPAIWFILSRRRCDEAVQYLQHANLLAEDEFQQIDLALKSFREQYPDAIREAAV 1257
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+ L +GVAAHHAGCLP+WKSFIEELFQ+GLVKVVFATETLAAGINMPART VLSS S +
Sbjct: 1258 RPLYQGVAAHHAGCLPLWKSFIEELFQKGLVKVVFATETLAAGINMPARTTVLSSFSGKY 1317
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
++++N + QMAGRAGRRGID GHVV+VQTP+ G EEC K+L G+EPLVSQFTA
Sbjct: 1318 QR---RISANVVLQMAGRAGRRGIDKEGHVVVVQTPFRGPEECYKMLRTGLEPLVSQFTA 1374
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
+YGM LNLL + V ES+ + + Q +S EAR L+EQSFGNY+GS ++ A+ ++
Sbjct: 1375 TYGMALNLLEDSAV-----ESETLSSEQR-QSFGEARSLIEQSFGNYIGSEILTGARAKM 1428
Query: 426 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 485
+I E + L S S D++ + L E E ++E+++ ++R LR + E R
Sbjct: 1429 VQISSEIETLESGQSTDSLSK-----LYEEKINEFNKMREKVETQERKERSLRFKFERHR 1483
Query: 486 FSALKDILKDFENGHLPFLCLQYKD---SEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
S L+ LK +P++ L Y+D EG SV ++ + N+
Sbjct: 1484 LSFLQSQLKQLSLEQVPYVLLTYEDINTGEGHTLSVAVFHMTE---------------NN 1528
Query: 543 SFAL--NRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR--IGFPNVALA 598
F L N + +D D ++ +G D+ Y F K ++ VYR IG
Sbjct: 1529 PFILGVNENHEPKVEDMDAS------FIGVGCDSFLYRFPLKVVRKVYRSTIG------- 1575
Query: 599 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEV 658
E +L + ++ WE + + C + S + VPV ++L+
Sbjct: 1576 -----AEERTALKSNLADVQWEIVGNDNVS--RC-QSSFPPHGY--EVPVPNTLTSE--- 1622
Query: 659 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
M E A + Q+ + + +++A + + + + EEK+ RLKA+ +R
Sbjct: 1623 CAMPEELVTAEKLLLMQQRSLGKWSRRLAEIDEVEIDNLVAKVKQMREEKVARLKAKLER 1682
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
+ KRI+ ++PSGWKEFL++ ++ + A+D NT + PLGE A AIRG NELWLA+ LR+
Sbjct: 1683 IGKRIKGMQPSGWKEFLQVVKILKDAGAMDRNTHKLLPLGEIARAIRGSNELWLAIALRD 1742
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
+ LL LKP++LAAV A+LV+E K +IYEPS V + + R LQE
Sbjct: 1743 EALLSLKPSELAAVAAALVTESPKSIPDNEYRTIYEPSAVVKEWVEKMQSERLWLYGLQE 1802
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898
H VE C LD Q +G VEAWA+G+ W+E+ ++ +D+GD ARLLRRTIDLL+QIP LP
Sbjct: 1803 NHNVEFACDLDPQLAGFVEAWAAGVNWKELEIEDIMDEGDFARLLRRTIDLLSQIPHLPH 1862
Query: 899 VDQRLQKNAVDASNVMDRPPISELAG 924
+D L K A +A+ MDRPPISE G
Sbjct: 1863 IDSELSKIAKEAARNMDRPPISEPVG 1888
>gi|308808266|ref|XP_003081443.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116059906|emb|CAL55965.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1096
Score = 520 bits (1340), Expect = e-144, Method: Compositional matrix adjust.
Identities = 348/995 (34%), Positives = 516/995 (51%), Gaps = 152/995 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
LR +++S + G + L DV +IVLDEVHYLSD RGTVWEE IIYCP +Q++CLSA
Sbjct: 180 LRNMLYSSAAGGRDDDR-LSDVSIIVLDEVHYLSDPGRGTVWEETIIYCPSRIQLLCLSA 238
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALL-----PLLDEKGKHMNRK 117
TV N ++L+GWI ++HG + I SS RPVPLTW +S K + L PLL+ KG ++
Sbjct: 239 TVGNPEDLSGWIEEVHGPCDTIVSSYRPVPLTWQYSMKPSRLYPGLGPLLNFKGTKLHHD 298
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG-QHQLSKNSINAIRRSQV 176
L +P+ G ++RN +N FG Q S+ S +RR V
Sbjct: 299 L------------RPFTREGLQQRN---------DNWEDGFGRQGPSSRESERILRRRFV 337
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRI 234
P V T+ L + DM+PA+WFIF+R+GCD +V YL NL+ E ++++AL+ F
Sbjct: 338 PHVETTVQQLIASDMIPAVWFIFSRKGCDQSVDYLMQAGGNLVTRAEREQIDVALEEFSK 397
Query: 235 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
A+R I+ L +GVA+HHAG LP WK +E+LFQRGL+KVVFATETLAAG+NMPAR
Sbjct: 398 DNKSAIRTAMIEPLRRGVASHHAGLLPAWKGLVEKLFQRGLIKVVFATETLAAGVNMPAR 457
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+VLS+LSKR G LTSNE QMAGRAGRRG D GHVV Q+P+EG +E +L+ +
Sbjct: 458 CSVLSALSKRDDQGPRLLTSNEFMQMAGRAGRRGFDTVGHVVCCQSPFEGPDEAFELVIS 517
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
E L SQF+ SYGMVLNLL GRSL++ + +VE+SFGNY+G
Sbjct: 518 PPENLKSQFSISYGMVLNLL-------------------QGRSLKQVQGIVERSFGNYLG 558
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR-F 473
+ EL ++ + L +I D D + A +K L E LK EKR
Sbjct: 559 GKARSVRERELHRVDVQIGKLAKQIEDTNDDEDA------ADWKRFVKLDERLKEEKRLL 612
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLC---------LQYKDSEGVEHSVPAVYLG 524
+ R+ E++ + I + P + ++ K+ ++ L
Sbjct: 613 KILFRQEAEMQAIEIRETIQNRLKQSGGPVVVNIDVGDNTLIRRKERRSATIALFEDDLL 672
Query: 525 KFDSLDSS---KLKNMASINDSFALNRL---------AQSNGDDY-----DTQDVKP--- 564
K + D + +L+++ S +D+ +L+ L +S+ DD+ D DV P
Sbjct: 673 KVEGQDFAGEWRLQDIDS-DDAPSLDELFGDESEDDKQRSDSDDFMQSVDDMADVTPRRL 731
Query: 565 ---------------------------SYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
+ ALGSD WY F IK+ IG AL
Sbjct: 732 ITAAIVEAVPSSKIAPTASAIGKPYPMGEFSALGSDGAWYRFYSDRIKS---IGVGTTAL 788
Query: 598 AQGD----ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP-----V 648
D P + SL W + + GGL W +VP V
Sbjct: 789 RSEDIADAGSPPSSSSL-------RWIRASG---GGL-----------WKADVPKKGKRV 827
Query: 649 LSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK 708
+ E + L + + ++ E Q+ ++ R +++I + E + K EEK
Sbjct: 828 ADRVLEGADSLLDAIQSSESTEYINAQKLQIQRTREEINSLKNVAELRSTAKQQKKREEK 887
Query: 709 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768
+K+LK + + +RI++ +GW+EFLR+ +++ E AL+ + + GE A +RGEN
Sbjct: 888 LKKLKTKRDSIERRIKEYSAAGWEEFLRVVDILVECGALESESLKLLEFGEICADLRGEN 947
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 828
ELWL M + + ++ +L A LA +L + + + Y PS ++ I ++
Sbjct: 948 ELWLGMAMSSPLVAELDVATLAGFAGALCMDN------RPATCFYNPSQNLVEAIEHVEP 1001
Query: 829 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888
LQ V++P L + + +VE+WASG +W ++ D +LD+GD+ARL RRT +
Sbjct: 1002 AMGDLQYLQSTTRVDVPISLSYEVAALVESWASGTSWDQIRNDTSLDEGDIARLFRRTAE 1061
Query: 889 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 923
LLAQIP++P + Q L+ A A++V++RPPIS+L+
Sbjct: 1062 LLAQIPRVPHLPQNLKTTAKKANDVVNRPPISDLS 1096
>gi|145351001|ref|XP_001419877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580110|gb|ABO98170.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1055
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 333/936 (35%), Positives = 506/936 (54%), Gaps = 93/936 (9%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
LR +++S + G E L DV +IVLDEVHYL+D SRGTVWEE IIYCP +Q++CLSA
Sbjct: 198 LRNMLYSSAAGGRDDER-LADVSIIVLDEVHYLADRSRGTVWEETIIYCPSRIQLLCLSA 256
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA-----LLPLLDEKGKHMNRK 117
TV N ++L+GWI ++HG+ E + SS RPVPLTW +S K + L PL++ K ++
Sbjct: 257 TVGNPEDLSGWIEEVHGECETVVSSYRPVPLTWQYSMKPSRMYPGLGPLMNFKSTKIHHD 316
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
L +P+ R + +N+ + +K S +RR VP
Sbjct: 317 L------------RPFT------REGLQQGSYGNNDWAPD--AQRGAKESERVLRRRFVP 356
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRIL 235
V T+ L + DM+PA+WFIF+R+GCD +V YL NL+ E E++ ALK F
Sbjct: 357 HVETTVQQLIASDMIPAVWFIFSRKGCDQSVDYLVQAGGNLVTSKERREIDDALKEFSEK 416
Query: 236 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
AVR ++ L +G+A+HHAG LP WK +E+LFQRGL+KVVFATETLAAG+NMPAR
Sbjct: 417 NKSAVRASMVEPLRRGIASHHAGLLPAWKGLVEKLFQRGLIKVVFATETLAAGVNMPARC 476
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
+VLS+LSKR G LTSNE QMAGRAGRRG D GHVV Q+P+EG +E +L+ A
Sbjct: 477 SVLSALSKRDDQGPRLLTSNEFMQMAGRAGRRGFDTVGHVVCCQSPFEGPDEAFELVLAP 536
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
E L SQF+ SYGMVLNLL GR+L++ + +VE+SFGNY+G
Sbjct: 537 PENLKSQFSISYGMVLNLL-------------------QGRTLDQVKGIVERSFGNYLGG 577
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
+ EL ++ + L SE+ D ++ A ++ L E L EKR
Sbjct: 578 KARSMRERELLRVNDQIRKLVSEMETLDDDEEA------AEWRRFVKLDERLHEEKRLLK 631
Query: 476 ELRRRMELKRFSALKDILK-DFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKL 534
L R++ R +D L+ + E P + D E +L FD D
Sbjct: 632 ILIRQLAEMRAIETRDQLQFELEQTGAPVILFGDSDDESQNDD----FLQSFDDDDGKFP 687
Query: 535 KNM--ASINDSFALNRLAQSN---GDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR 589
+ + A+I ++ ++A + G Y + + ALG+D WY +K++
Sbjct: 688 RGLITAAIVEAVPAMKIAATASTIGKPYPMGE-----FTALGNDGVWYRLYSDRVKSI-S 741
Query: 590 IGFPNVALAQ-GD-ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP 647
+G V L GD +P + SL W + + GGLW + S +T + +P
Sbjct: 742 LGADAVRLESFGDIGVPPASSSL-------RWIRASG---GGLWKADVSKKTKLVANGIP 791
Query: 648 VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE 707
++L++ M E D++E Q+ ++ + +++I + ++ K E
Sbjct: 792 --TNLND----FEMIVESSDSMEFIDAQKLQIQKTREEINGLKNIATLRRAAKQQKRAET 845
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 767
K+K+LK + + KRI++ +GW +FLR+ +++ E A++ +T + GET A +RGE
Sbjct: 846 KLKKLKEKRDGIEKRIKEYSAAGWDDFLRVVDILVECGAIERDTLKLLEFGETCADLRGE 905
Query: 768 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD 827
NELWL M + + + +L A LA +L + + + Y S ++ V+ L+
Sbjct: 906 NELWLGMAMSSPSIENLDAATLAGFAGALCMDN------RPATCYYGASQHLVEVLEELE 959
Query: 828 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 887
LQ+ +++P L + + +VE+WASG +W ++ D +LD+GD+ARL RRT
Sbjct: 960 PEMGDLQYLQQSSRIDMPLSLSFEIAALVESWASGTSWDQIRRDTSLDEGDIARLFRRTA 1019
Query: 888 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 923
+LLAQIP+ + + L+ A A++V++RPPIS+L+
Sbjct: 1020 ELLAQIPRTAHLPESLKATAKKANDVVNRPPISDLS 1055
>gi|332707434|ref|ZP_08427483.1| Superfamily II RNA helicase [Moorea producens 3L]
gi|332353785|gb|EGJ33276.1| Superfamily II RNA helicase [Moorea producens 3L]
Length = 920
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 314/934 (33%), Positives = 490/934 (52%), Gaps = 150/934 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + + V+ ++LDE HY++D RGTVWEE IIYCP ++QI+ LSA
Sbjct: 119 FRNMLYGTPIGQVGA--SMLGVEAVILDECHYMNDRQRGTVWEESIIYCPPDIQIVALSA 176
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ Q+HG T+LI S RPVPL +YF+ ++ LL++ +N L
Sbjct: 177 TVANSDQLTDWLNQVHGSTQLIYSDFRPVPLEFYFAHPKGIVSLLNDDQTKINNSLK--- 233
Query: 123 LQLSTSEVKPYKDGGSRRRNSR-KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+RR S+ KH R + P +
Sbjct: 234 ---------------TRRPKSKDKHG-------------------------RPEGPSISS 253
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241
+ L+ R+MLPAI+FIF+RRGCD AV + +L++E E + ++ + F P+A R
Sbjct: 254 VVSKLKKREMLPAIYFIFSRRGCDKAVDEMGPISLVNEQEAARLKKRIDEFITKNPEAAR 313
Query: 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
I L +G+AAHHAG LP WK +EELFQ+GLVKVVFATETLAAGINMPART V+SSL
Sbjct: 314 TKQIDPLYRGIAAHHAGILPAWKGLVEELFQQGLVKVVFATETLAAGINMPARTTVISSL 373
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
SKRT G LT++E QMAGRAGRRG+D G+VV VQTP+EGA+E L AG +PLVS
Sbjct: 374 SKRTDRGHRLLTASEFLQMAGRAGRRGMDTNGYVVTVQTPFEGAKEAAYLATAGADPLVS 433
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
QFT +YGMVLNLL SL +A++LVE+SF Y+ + +
Sbjct: 434 QFTPTYGMVLNLL-------------------QTHSLPQAKELVERSFAQYLATLYLKPQ 474
Query: 422 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+ + ++ E + +++ + A + L+E LK E+R +L+ +
Sbjct: 475 QQAITELTAELTRIDFQLAP----------VDVAVMEGYQKLKEHLKVERRILKDLQHQA 524
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
E+ A+ +L+ E+G + +L ++ V VPAV + K
Sbjct: 525 EVSVSKAVSQVLQQVESGAILYLKGKHVP---VSSPVPAVLVSK---------------- 565
Query: 542 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVA---LA 598
Q + Y V L + N WY T + + GFP VA ++
Sbjct: 566 ---------QKGSGQF-------PYLVCLSAANRWYVATTADVMGLD--GFPEVADDQVS 607
Query: 599 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCME-----------GSLETWSWSLNVP 647
G T S + +++ + D G L +E G+ +T + + VP
Sbjct: 608 NGSTEDYSTGSTQGESSDIITLRYLD--IGTLQPLEGLEIKPGQVKGGNEDTEALANQVP 665
Query: 648 VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE 707
++ L + EV +EQ+ VA L+ ++ T +++ +K ++
Sbjct: 666 TIAQLWVAPEV--------------REQQGVVADLEGQM-ETHALRQWGNPSQLIKRHKK 710
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 767
++ + ++R TK + + W EFL + ++ E+ +L+ T + LG+ AA++RGE
Sbjct: 711 RLFLQEQINQRQTK-FREYQAQHWHEFLNLIEILKESGSLEDLTPTV--LGQVAASVRGE 767
Query: 768 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD 827
NELWLA+ + + L DL P QLAA C+++V+E + W N Y+PS V+ + L
Sbjct: 768 NELWLALAMLSGELDDLDPHQLAAACSAIVTETPRPDSWTN----YKPSEEVLEALGNLR 823
Query: 828 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 887
R +LQ ++ V +P + + G++E W+ G +WRE+ + +LD+GD+ R+LRRT+
Sbjct: 824 RIRRQVFQLQRRYHVALPVWSEDRLIGLIEQWSLGKSWRELCGNSSLDEGDVVRILRRTL 883
Query: 888 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
D+L+QIP + + + L+ NA+ A+ ++DR P++E
Sbjct: 884 DILSQIPHVLPLPESLKANAIRAAQLLDRFPVNE 917
>gi|427730604|ref|YP_007076841.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
gi|427366523|gb|AFY49244.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
Length = 893
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 334/930 (35%), Positives = 491/930 (52%), Gaps = 162/930 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL +++ L PLL++ ++ +L+
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKISPRLA--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R RK D N R + P +I T
Sbjct: 229 -----------------NRGKRKQGDRGRNG-------------------RPEAPSLIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL+ RDMLPAI+FIF+RRGCD AV + D L+D E + + F P+A R
Sbjct: 253 LNHLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVDNDESQVLRRQIDDFLSRNPEAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGIAAHHAGILPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQ
Sbjct: 373 KRTDTGHRLLNASEFLQMAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLATSKPDPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LEE R+L+E+SFG Y+ + + L
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTLEETRELIERSFGQYMAT-LHLRPD 472
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMA---NLQEELKAEKRFRTELRR 479
EL D L +++++ ID + ++ + E+A L++ LKAE++ L+
Sbjct: 473 YELI------DELKAQLAE--IDEQ----IASVSEHELAIYEKLRQRLKAERQLLKTLQE 520
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNM 537
+ + R +K +L G L L L+ K+ + SVP AV +G+ + S
Sbjct: 521 QAQEARQEQIKMLLDFAVCGTL--LSLKGKN---IAVSVPITAVLVGQSPTAGQS----- 570
Query: 538 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
SY V LG DN WY + + +Y P V +
Sbjct: 571 ---------------------------SYLVCLGQDNRWYVAATEDVVDLY-AELPRVEV 602
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
Q D LP + E++++ G C G+ T + + N+P E DE
Sbjct: 603 PQ-DILPPQ---------ELIFKP-------GQSC-RGNAITDAIAQNIP------EPDE 638
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 717
LH+ E EQ +V ++ ++ ++ V + E+ ++ +
Sbjct: 639 SLHLPPE-------VAEQLHRVTAVQAQLEANPLYQSGN--VAKIFKRRERYAEIQEELQ 689
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMV 775
L ++EQ W+EFL + ++ + LD + TQ LG+ AAAIRGENELWL +
Sbjct: 690 ELEAQVEQQSQRHWEEFLNLITILQQFDCLDNLVPTQ----LGQVAAAIRGENELWLGLA 745
Query: 776 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE 835
L + L +L P LAAV A+LV+E + ++ + S + + L + R + L+
Sbjct: 746 LASGELNNLDPQHLAAVIAALVTETPR----PDSRVNFNLSPEIDEAWSRLQKIRRAVLK 801
Query: 836 LQEKHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892
+Q +HGV +P L++++ G+ VE WA G W E+ + LD+GD+ R+LRRT+DLL+Q
Sbjct: 802 VQYRHGVALPVGLENRYIGLIAIVEQWALGTEWVELCENTTLDEGDVVRILRRTLDLLSQ 861
Query: 893 IPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
IP +P++ LQ+NA A ++DR P++E+
Sbjct: 862 IPHVPNLPDALQRNAYRAMQLIDRFPVNEV 891
>gi|354566612|ref|ZP_08985784.1| DSH domain protein [Fischerella sp. JSC-11]
gi|353545628|gb|EHC15079.1| DSH domain protein [Fischerella sp. JSC-11]
Length = 891
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 329/929 (35%), Positives = 480/929 (51%), Gaps = 162/929 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+E+Q+I LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLTDVEAVVLDECHYMNDRQRGTVWEESIIYCPREIQLIALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+++L W+ Q+HG T+LI S RPVPL ++F + PLL++ +N +L
Sbjct: 172 TVANSEQLTDWLNQVHGPTDLIYSDFRPVPLEFHFGNLKGVFPLLNDDKTQINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+R +K + N RR + P +
Sbjct: 228 ----------------LKRGRKKELEKGKGN------------------RRPEAPSINFI 253
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL+ RDMLPAI+FIF+RRGCD AV + D L++E E ++ + F P+A R
Sbjct: 254 LSHLQERDMLPAIYFIFSRRGCDKAVAEVGDMWLVNEQEAQQLRRQIDEFLTRNPEAGRS 313
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP+WK +EELFQ+GL+KVVFATETLAAGINMPART V+S++S
Sbjct: 314 GHIAPLYRGIAAHHAGILPVWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTIS 373
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G LT++E QMAGRAGRRG+D GHVV +QTP+EGAE L +PLVS
Sbjct: 374 KRTDTGHRMLTASEFLQMAGRAGRRGMDKVGHVVTLQTPFEGAEHAAALAIKKPDPLVSH 433
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +H +L+EAR+L+E+SFG Y+ +NV L +
Sbjct: 434 FTPSYGMVLNLLQ----IH---------------TLDEARELIERSFGQYL-ANVHLQPR 473
Query: 423 DE-LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+ + ++Q E + + ++I+ + E+ L++ LK E++ L+ +
Sbjct: 474 QQYIAQLQAELEQIKTQIAT----------VEESEIASYEKLRQRLKVEQKLLNTLQEQA 523
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMAS 539
+ R L +L +G L LCL+ K + S+P AV +GK +
Sbjct: 524 DEGRQDELTMMLSFAVSGTL--LCLKGK---YLTMSLPITAVLIGKTQGASQT------- 571
Query: 540 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNV 595
Y V LG DN WY T + +Y RI P
Sbjct: 572 -------------------------PYLVCLGRDNRWYVATTADVVNLYAELPRIDVPP- 605
Query: 596 ALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSES 655
D LP MSL G C G E+ + + +P E
Sbjct: 606 -----DLLPPAQMSLK----------------PGQSC-RGDEESMAIASQIP------EP 637
Query: 656 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR 715
+E LHM E EQ +A L+++I + V T+ + + L+A
Sbjct: 638 EESLHMPPE-------VAEQLRVIAALREQIEAHPLHQTGN--VGTIFKRKLRAAELEAE 688
Query: 716 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLA 773
+ L ++EQ W+EFL + ++ LD + TQ LG+ AAAIRGENELWL
Sbjct: 689 IQELQAQVEQQSQRHWEEFLNLIEILQYFECLDNLLPTQ----LGQIAAAIRGENELWLG 744
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+ L + L +L P LAA A+LV+E + ++ ++ S V + L R
Sbjct: 745 LALASGELDNLDPHCLAAAAAALVTETPR----PDSKVRFDLSDQVAEALAKLRGIRRKM 800
Query: 834 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
+LQ ++ V +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 801 FQLQRRYNVALPIWLEFELIALVEQWALGMDWVELCDNTTLDEGDVVRILRRTLDLLSQI 860
Query: 894 PKLPDVDQRLQKNAVDASNVMDRPPISEL 922
P +P + + L++NA+ A ++DR P++E+
Sbjct: 861 PHVPYMSESLRRNALRAIQLIDRFPVNEV 889
>gi|428778819|ref|YP_007170605.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428693098|gb|AFZ49248.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
Length = 884
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 315/921 (34%), Positives = 469/921 (50%), Gaps = 150/921 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ S+G V + L +V+ +VLDE HY++D +RGTVWEE IIYCPK +Q++ LSA
Sbjct: 112 FRNMLYGTSIGEVGT--SLENVEAVVLDECHYMNDPNRGTVWEESIIYCPKSIQLVALSA 169
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+ANA +L WI +IHG TELI S RPVPL +YFST L PLL+E+ MN +L
Sbjct: 170 TIANAGQLTDWINEIHGPTELIKSDFRPVPLEFYFSTLKGLFPLLNEQKTKMNSRL---- 225
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP + G R I +S P +
Sbjct: 226 --------KPKQKGRKIR------------------------------ISKSDCPTIDLV 247
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L +R++LPAI+FIF+RRGCD +VQ L +L+ E ++++ L+RF +P+ R
Sbjct: 248 VEQLATRELLPAIYFIFSRRGCDQSVQQLNRLSLVTPEEKAQIQEHLQRFLAQHPEGARS 307
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I+ L +GVA+HHAG LP WK +EELF RGLVKVVFATETLAAG+NMPART V+SSLS
Sbjct: 308 GQIEPLKRGVASHHAGVLPAWKGLVEELFTRGLVKVVFATETLAAGVNMPARTTVISSLS 367
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D RG+VV VQT +EGA+E L +PLVSQ
Sbjct: 368 KRTDQGHRLLRASEFLQMSGRAGRRGMDQRGNVVCVQTRFEGAKEAAYLATRESDPLVSQ 427
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL ++++EA+ L+++SF Y+ + ++ +
Sbjct: 428 FTPTYGMVLNLL-------------------QRQTIQEAKSLLQRSFAQYLANLKLIPEQ 468
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ +E + +I+ + A + + LQ LK EKR L ++ +
Sbjct: 469 KAIAQLTQEIARIDVQIAP----------IPRAYFNQYEKLQAHLKEEKRILKYLDKQAQ 518
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R AL + +G L FL +Y V +PAV
Sbjct: 519 RDRTPALSAAISQLRSGDLLFLKGKYVT---VSSPLPAV--------------------- 554
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
L Q+ G + S + L +DN WY TE+ + + + P + D
Sbjct: 555 ------LVQTTGSPGQS-----SLLICLAADNRWYVATERDVSAIGEVLLPESYFSSIDL 603
Query: 603 LPR-ETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM 661
P E KG+ + ++A ME E + P +++ E + +
Sbjct: 604 PPDLEIKPGKRRKGDEITAEIAQR-------ME---EVEIPDTDAPEVAAQKEKIKDIQQ 653
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTK 721
H +Q + +L K +R + EE+++R +A ++
Sbjct: 654 RMSSHPL-----QQWGQPKQLLKTYSRRQQL-------------EEELERHQANTR---- 691
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
+ + W+EFL I V+ AL+ LG+TAAAIRG+NELWL + LR+
Sbjct: 692 ---ENQSQHWREFLDICEVLETFGALEKYQPT--SLGQTAAAIRGDNELWLGLALRSGHF 746
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 841
+L PA LAA C++L++E + ++ S + P VIN ++ L R ++Q ++
Sbjct: 747 DELSPAYLAAACSALITETPR----PDSESDFPPPMPVINALSELRGIRRELFQVQRRNR 802
Query: 842 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 901
V IP L+ G+VE W G+ W+++ +LD+GDL R+LRR+ D L+QIP +P +
Sbjct: 803 VAIPLWLEPDLIGLVEQWVEGIEWQDLCDATSLDEGDLVRILRRSRDFLSQIPHVPYLPN 862
Query: 902 RLQKNAVDASNVMDRPPISEL 922
L NA A M+R P+ E
Sbjct: 863 VLAMNARLAVEQMERFPVQEF 883
>gi|220909112|ref|YP_002484423.1| DSH domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865723|gb|ACL46062.1| DSH domain protein [Cyanothece sp. PCC 7425]
Length = 889
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 303/920 (32%), Positives = 459/920 (49%), Gaps = 151/920 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+V+VLDE HY++D RGTVWEE IIYCP +Q++ LSA
Sbjct: 117 FRNMLYGTPIGEVGT--SLAGVEVVVLDECHYMNDRQRGTVWEESIIYCPAAIQLVALSA 174
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN+ +L WI Q+HG T LI S +RPVPL ++F T L PLL+ + +N +LS
Sbjct: 175 TIANSQQLTDWIDQVHGPTRLIYSEQRPVPLRYHFCTSKGLFPLLNRERTKLNAQLS--- 231
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ G + R S + D +P +
Sbjct: 232 -----------QQRGRQGRQSHRSED---------------------------IPNLTFV 253
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD A+ + LL+ E ++++ + F +PD
Sbjct: 254 LSQLKERDMLPAIYFIFSRRGCDQAIAEVSSIQLLNPAETLQLQIQIDHFLQQHPDQAAS 313
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
P +K L +G+AAHHAG LP+WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 314 PYVKPLYQGIAAHHAGILPLWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLS 373
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG LT +E QMAGRAGRRG+D GHVV QTP+EG E L AG +PL+SQ
Sbjct: 374 KRTDSGHRLLTPSEFLQMAGRAGRRGMDQLGHVVTQQTPFEGGREAAYLATAGADPLISQ 433
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ SYGMVLNLL +LE+A++LVE+SFG Y+ + + +
Sbjct: 434 FSPSYGMVLNLL-------------------QTHTLEQAKELVERSFGQYLSTLHLAPQR 474
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ + E + + ++++ ++ A K+ L+E+++ E+R L+ + E
Sbjct: 475 QAIADLTAEFNQVQAKLATVDLN----------ALKQYQKLREQVREEERLLKILQHQAE 524
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L L + Y + PAV G + S+ + + + +
Sbjct: 525 ETRRKQLA-------------LAIVYAPPGTLLSLKPAV--GSPRTCLSAVVVSQVASSG 569
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
F Y LG DN WY + + ++ A
Sbjct: 570 QF--------------------PYLGCLGQDNHWYVVSLDQVVDIH------------AA 597
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP + L E L K + G+ ET + + +P
Sbjct: 598 LPLSRFAALPFPAE-LPHKPGSRQ-------AGTAETTAIAAQIPDCE------------ 637
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
VE E + RL+ A+ + ++ +++ RL+ + + ++
Sbjct: 638 ------VEVPAEVLAQQGRLEAIQAKLTSHPLHLANPALLQRLQQRATRLQDQIRSRQEK 691
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
+ Q W+EFL + ++ RAL+ PLG+TAAA+RG+NELWL + + + L
Sbjct: 692 LNQQSHHHWEEFLCLLKILQTFRALEDLAPT--PLGQTAAALRGDNELWLGLAIASGELD 749
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
L P AA CA+LV+E + ++ + YEP+ V + L R + Q ++ V
Sbjct: 750 GLDPHHFAAACAALVTETPR----SDSYTSYEPADAVDAALMALRPLRRQLFQAQRRYQV 805
Query: 843 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
+P L+ + G+VE WA G W E+ LD+GD+ RLLRRT+D L+Q+P P +
Sbjct: 806 VLPVWLEPELVGLVEQWALGTEWSELCTHTNLDEGDIVRLLRRTLDFLSQLPHAPQISPE 865
Query: 903 LQKNAVDASNVMDRPPISEL 922
L++NA+ A ++DR P++++
Sbjct: 866 LRQNALRAHQLLDRFPVNDI 885
>gi|255082724|ref|XP_002504348.1| predicted protein [Micromonas sp. RCC299]
gi|226519616|gb|ACO65606.1| predicted protein [Micromonas sp. RCC299]
Length = 934
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 329/921 (35%), Positives = 466/921 (50%), Gaps = 135/921 (14%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
S+ L DV V+VLDEVHYLSD SRGTVWEE IIYCP VQ++CLSATV N D+LAGWI +
Sbjct: 131 SDGRLDDVGVVVLDEVHYLSDASRGTVWEETIIYCPPRVQLLCLSATVGNPDDLAGWIEE 190
Query: 77 IH------GKTELITSSRRPVPLTWYFSTK-----TALLPLLDEKGKHMNRKLSLNYLQL 125
+H + + I S RPVPL W+FS + L PLL+ G LNY
Sbjct: 191 VHCAGASSQRCQTIVSDYRPVPLNWHFSMRPGRMWPGLGPLLNRNGTK------LNY--- 241
Query: 126 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 185
E+ P+ G +R+ A N + VP V T+
Sbjct: 242 ---ELFPFTKEG-----AREWAAANGGAGL--------------------VPHVETTVGQ 273
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFRILYPDAVREP 243
L + MLPA+WFIF+R+GCD A YL DC L+ E +++ AL+ F PDA+R
Sbjct: 274 LVAASMLPAVWFIFSRKGCDQAAFYLADCGAKLVTPKEEAQIAAALEEFEKSNPDAMRPE 333
Query: 244 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
A+ LL G+A+HHAG LP WK +E LFQRGL+KVVFATETLAAG+NMPAR +VLS+LSK
Sbjct: 334 AVIPLLMGIASHHAGLLPGWKGLVENLFQRGLLKVVFATETLAAGVNMPARCSVLSALSK 393
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
R G LTSNE QM GRAGRRG D GHVV Q+P+EG EE L+ A E L SQF
Sbjct: 394 RGDEGPRMLTSNEFMQMCGRAGRRGYDTVGHVVCCQSPFEGCEEAFGLVTAPPENLKSQF 453
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 423
+ SYGMVLNL L+AGR L R +VE+SFGNY+G
Sbjct: 454 SISYGMVLNL------------------LRAGRPLSSVRSIVERSFGNYLGGRARREQVR 495
Query: 424 ELCKIQKETDVLTSEIS--DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
EL +I++++D L +I+ D ++ + + L E LK E+R
Sbjct: 496 ELRRIREQSDALREQIATGDCGVEPEE--------WARFIKLDERLKEERRL-------- 539
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
LK I + ++ +D+ V +VP V K D + ++ S
Sbjct: 540 -------LKIISRQTDDAMAEMARANVRDALEVLDTVP-VARSKVDLTPVAVVEAYDSTG 591
Query: 542 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 601
+ A+ L + +V L +D TWY F IK V + G+
Sbjct: 592 VASAMYPLGE---------------FVGLAADGTWYRFDASRIKAVSENPVLHADQDGGE 636
Query: 602 --ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
A P T G + W + + GGLW +G+ E + V S++ S E +
Sbjct: 637 WTAPPTPT------PGSLRWVRAS----GGLWRAQGNEEAVEAAQQV----SIALSSEAI 682
Query: 660 HMSFEYH-DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
+ + + DA+ EQR ++A K ++ + F + ++ V EK+K+L+ R+
Sbjct: 683 NSADDSEADALAFLDEQRARIAATKAELHEMKMFSDMRRAVKKTNRKREKLKKLEERA-- 740
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
K++E+ L +V H T + PLGE A +RGENELWL + L +
Sbjct: 741 --KKVERRRRRRDARRLARWDVKHGGSDRAEETLRLTPLGECCAKLRGENELWLGVALSS 798
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
+ L L P Q+A V +L + + S Y+PS + N + L+ + + LQ
Sbjct: 799 ECLEGLDPTQIAGVAGALCCDSN-----RPTSCDYDPSPALGNALADLEPEMAEVMALQF 853
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898
+ + P + + +VE+WASG TW ++ D L++GD+AR+ RRT +LLAQ+P+ +
Sbjct: 854 EAAMSSPVNMSRAVAALVESWASGATWDQVRGDTNLEEGDIARVFRRTSELLAQMPRARE 913
Query: 899 VDQRLQKNAVDASNVMDRPPI 919
+ +K A A+ ++ RPPI
Sbjct: 914 LPLATRKAAEQAAQLVLRPPI 934
>gi|186682114|ref|YP_001865310.1| DSH domain-containing protein [Nostoc punctiforme PCC 73102]
gi|186464566|gb|ACC80367.1| DSH domain protein [Nostoc punctiforme PCC 73102]
Length = 891
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 331/923 (35%), Positives = 475/923 (51%), Gaps = 150/923 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ ++LDE HY++D RGTVWEE IIYCP+EVQ+ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVILDECHYMNDRQRGTVWEESIIYCPREVQLAALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL ++F L PLL++ +N +L
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNDSKTKINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
++ K GG R R R + P +I T
Sbjct: 228 -------LQKKKRGGERDRGRSG---------------------------RPEAPGIIYT 253
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 254 LSQLEQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNEESQILRQQIDDFLARNPEAGRS 313
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK+ +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 314 GQIAPLYRGIAAHHAGILPAWKALVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 373
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQ
Sbjct: 374 KRTDTGHRLLNASEFLQMAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLGTSKPDPLVSQ 433
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE+ R+L+E+SFG Y+ + +
Sbjct: 434 FTPSYGMVLNLL-------------------QTHTLEQTRELIERSFGQYMATLHLRPEY 474
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ +++K+ L +I+ A+D +E A E L++ LK E++ L+ + +
Sbjct: 475 DEIAELEKQLAQLHEQIA--AVDE------NELAIYE--KLRQRLKVERQILKTLQEQAQ 524
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L +L +G L L L+ K+ V V AV +GK
Sbjct: 525 EDRQEELGMMLDFAVSGTL--LSLKGKNIT-VSSPVTAVLVGK----------------- 564
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
S G + Y V LG DN WY T + +Y P + ++ D
Sbjct: 565 ---------SPGSG------QAPYLVCLGHDNRWYVATTGDVVDLY-AELPRIEVSP-DV 607
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP M L K S G+ ET++ + +P E LH++
Sbjct: 608 LPPPEMPL----------KPGQSR-------RGNEETFAIATRIP------NPIESLHLA 644
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE-KIKRLKARSKRLTK 721
E EQ ++ A +++++ E ++ F K L+A ++L
Sbjct: 645 PE-------VAEQLSRTAAVQEQL---EAHPLHQSGNAATLFKRRAKYVELEAELEQLQG 694
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNK 779
++EQ W+EFL + ++ ALD + TQ LG AAAIRGENELWL +V +
Sbjct: 695 QVEQQSQRHWEEFLNLILILQHFGALDNLVPTQ----LGRIAAAIRGENELWLGLVFASG 750
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
L +L P LAA A LV E + ++ +E S V + L R +LQ +
Sbjct: 751 ELDNLDPHHLAAAAAGLVMETPR----PDSKVNFELSNEVAEALAKLRGIRRQMFQLQRR 806
Query: 840 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 899
+ V +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QIP +P +
Sbjct: 807 YNVALPIWLEFELIAIVEQWALGMEWTELCENTTLDEGDVVRILRRTLDLLSQIPHVPHL 866
Query: 900 DQRLQKNAVDASNVMDRPPISEL 922
Q+NA A ++DR P++E+
Sbjct: 867 PDSFQRNAYRAMQLIDRFPVNEV 889
>gi|75909112|ref|YP_323408.1| type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
gi|75702837|gb|ABA22513.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
Length = 893
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 321/925 (34%), Positives = 484/925 (52%), Gaps = 152/925 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPRGVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL +++ L PLL++ +N +L+
Sbjct: 172 TVANSDQLTDWLSRVHGPTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKINPRLA--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R ++ D N R + P +I T
Sbjct: 229 -----------------NRGKKRQGDRGKNG-------------------RPEAPSLIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 253 LNQLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNEESQILRRQIDDFLARNPEAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +GVAAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGVAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +GHVV VQTP+EG++E L + +PLVSQ
Sbjct: 373 KRTDTGHRLLNASEFLQMAGRAGRRGMDKQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +++EA++L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTIDEAKELIERSFGQYMATLHLRPDY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+E+ ++ E L +I +A+D +S L+ E L++ LK E++ L+ + +
Sbjct: 474 EEIAALEGELAKLQEQI--NAVD-ESDILIYE-------KLRQRLKVERQLLKTLQEQAQ 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASI 540
+R +K +L +G L L L+ K+ + S P AV +GK S
Sbjct: 524 EERQEQIKMLLDFAISGTL--LSLKGKN---ITASTPITAVLVGKTSGSTQS-------- 570
Query: 541 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG 600
+ V LG DN WY + + +Y P V +
Sbjct: 571 ------------------------ACLVCLGQDNRWYVASTADVVDLY-AELPRVDVPP- 604
Query: 601 DALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLH 660
D LP L+L G+ G+ ET + + ++P + + LH
Sbjct: 605 DILPPP--ELILKPGQ---------------SSRGAKETMAIAQSIP------DPQQSLH 641
Query: 661 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 720
+S E EQ ++ A ++ ++ + V TV + L+A + +
Sbjct: 642 LSPE-------VAEQLSRTAAIQAQLEANPLHQSGN--VSTVFKARARYVELEAELEEIQ 692
Query: 721 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 780
++EQ W+EFL + ++ + LD V LG+ AAAIRGENELWL + L +
Sbjct: 693 AQVEQQSQRYWEEFLNLITILQQFDCLD--NLVPTALGQIAAAIRGENELWLGLALASGE 750
Query: 781 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 840
L +L P LAA A+LV+E + ++ + S + + + L + R + L++Q +H
Sbjct: 751 LNNLDPHHLAATIAALVTETPR----PDSRVNFNLSPEIDDAWSRLQKTRRAVLKVQYRH 806
Query: 841 GVEIPCCLDSQFSG---MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 897
GV +P L++++ G +VE WA G+ W E+ + LD+GD+ R+LRR++DLL+QIP +P
Sbjct: 807 GVALPVGLENRYIGLIALVEQWALGIEWVELCQNTTLDEGDVVRILRRSLDLLSQIPHVP 866
Query: 898 DVDQRLQKNAVDASNVMDRPPISEL 922
++ LQ+NA A ++DR P++E+
Sbjct: 867 NLPDVLQRNAYRAMQLIDRFPVNEV 891
>gi|428302129|ref|YP_007140435.1| DSH domain-containing protein [Calothrix sp. PCC 6303]
gi|428238673|gb|AFZ04463.1| DSH domain protein [Calothrix sp. PCC 6303]
Length = 894
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 326/927 (35%), Positives = 484/927 (52%), Gaps = 155/927 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DVD +VLDE HY++D RGTVWEE I+YCP EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGIS--LTDVDAVVLDECHYMNDRQRGTVWEESIVYCPHEVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N+D+L W+ Q+HG T+LI S RPVPL +YF L PLL++ H+N +L
Sbjct: 172 TVDNSDQLTDWLNQVHGPTDLIYSDFRPVPLEFYFGNTKGLFPLLNDSKTHINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
++ K K G R RN R A SIN +
Sbjct: 228 -----AQRKKRKGDGDRGRNGRPEAP------------------SINYV----------- 253
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL+ RDMLPAI+FIF+RRGCD +V + D L++ E ++ + + F PDA R
Sbjct: 254 LSHLQQRDMLPAIYFIFSRRGCDKSVADVGDMWLVNPDEAYKLRVQIDDFLTRNPDAGRA 313
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 314 GHVGPLYRGIAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 373
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D+RG+VV +QTP+EGA+E L + +PLVSQ
Sbjct: 374 KRTDNGHRLLNASEFLQMAGRAGRRGMDDRGYVVTLQTPFEGAKEASYLATSKPDPLVSQ 433
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE+ R+L+E+SFG Y+ + +
Sbjct: 434 FTPSYGMVLNLL-------------------QTHTLEQTRELIERSFGQYLANFHLRPQY 474
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ L ++Q++ ++I DA++ +E A E L++ LK E++ L+ +
Sbjct: 475 EYLAELQRQLGETQAQI--DAVNE------NELALYE--KLRQRLKVERQLLKTLQEQAV 524
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L +L +V LG K KN+
Sbjct: 525 EARQEELGMMLG---------------------FAVAGTILGL-------KGKNIPVATP 556
Query: 543 -SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 601
+ AL + S+G + Y + LGSDN WY T + +Y FP + + + +
Sbjct: 557 VTAALITKSASSG--------QAPYLICLGSDNRWYVATTGDVVELY-AEFPRIDVPE-N 606
Query: 602 ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM 661
LP M + K S G+LET + + SS+ E + + ++
Sbjct: 607 LLPPAEMQI----------KPGHSR-------RGNLETNA------IASSIPEPEGLSYL 643
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT-EEKIKRLKARSKRLT 720
+ E +EQ ++V ++ +I E Y+ F ++ L + L
Sbjct: 644 APE-------VREQLSRVTAIQAQI---EAHPLYQSGNAASLFKRRNRVVELTVEIEELE 693
Query: 721 KRIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRN 778
++Q W+EF+ + +++ + L I TQ G+ AAAIRGENELWL + L +
Sbjct: 694 AHVQQQSQRHWEEFVNLIDILQQFDCLSNLIPTQ----QGQIAAAIRGENELWLGLALSS 749
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
+ L P QLAA+ A+LV+E + ++ ++ S V L + R + L++Q
Sbjct: 750 GEVDALDPQQLAAIVAALVTETPR----PDSFVRFDLSAEVDEAWGRLQKIRKAVLKVQY 805
Query: 839 KHGVEIPCCLDSQFSG---MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 895
+HGV +P L+ ++ +VE WA G+ W E+ +LD+GD+ R+LRRT+DLL+QIP
Sbjct: 806 RHGVALPVGLEIRYINIISLVEQWALGVEWVELCEHTSLDEGDVVRILRRTLDLLSQIPH 865
Query: 896 LPDVDQRLQKNAVDASNVMDRPPISEL 922
+P + L +NA A ++DR P++E+
Sbjct: 866 VPHLSDALYRNARRAMQLIDRFPVNEV 892
>gi|17227985|ref|NP_484533.1| hypothetical protein alr0489 [Nostoc sp. PCC 7120]
gi|17129834|dbj|BAB72447.1| alr0489 [Nostoc sp. PCC 7120]
Length = 893
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 315/923 (34%), Positives = 477/923 (51%), Gaps = 148/923 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPRGVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL +++ L PLL++ +N +L+
Sbjct: 172 TVANSDQLTDWLSRVHGPTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKINPRLA--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R ++ D N R + P +I T
Sbjct: 229 -----------------NRGKKRQGDRGKNG-------------------RPEAPSLIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL+ RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 253 LNHLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNEESQILRRQIDDFLARNPEAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +GVAAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGVAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +GHVV VQTP+EG++E L + +PLVSQ
Sbjct: 373 KRTDTGHRLLNASEFLQMAGRAGRRGMDKQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +++EA++L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTIDEAKELIERSFGQYMATLHLRPDY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+E+ ++ E L +I +A+D + + L++ LK E++ L+ + +
Sbjct: 474 EEIAALEGELAKLQEQI--NAVDENDILIYEK--------LRQRLKVERQLLKTLQEQAQ 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+R +K +L DF LG SL K I
Sbjct: 524 EERQEQIK-MLLDF------------------------AVLGTLLSLKGQNFKVSTPITA 558
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
+ +++G + + V LG DN WY + +Y P V + D
Sbjct: 559 VL----VGKTSG------STQSACLVCLGQDNRWYVAATADVVDLY-AELPRVDVPP-DI 606
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP L+L G+ G+ ET + + ++P + + LH+S
Sbjct: 607 LPPP--ELMLKPGQ---------------SSRGAKETMAIAQSIP------DPQQSLHLS 643
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
E EQ ++ A ++ ++ + V V + L+A + + +
Sbjct: 644 PE-------VAEQLSRTAAIQAQLEANPLHQSGN--VSMVFKARARYVELEAELEEIQAQ 694
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
+EQ W+EFL + ++ + LD V LG+ AAAIRGENELWL + L + L
Sbjct: 695 VEQQSQRYWEEFLNLITILQQFDCLD--NLVPTALGQIAAAIRGENELWLGLALASGELN 752
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
+L P LAA A+LV+E + ++ + S + + + L + R + L++Q +HGV
Sbjct: 753 NLDPHHLAATIAALVTETPR----PDSRVNFNLSPEIDDAWSRLQKTRRAVLKVQYRHGV 808
Query: 843 EIPCCLDSQFSG---MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 899
+P L++++ G +VE WA G+ W E+ + LD+GD+ R+LRR++DLL+QIP +P++
Sbjct: 809 ALPVGLENRYIGLIALVEQWALGIEWVELCQNTTLDEGDVVRILRRSLDLLSQIPHVPNL 868
Query: 900 DQRLQKNAVDASNVMDRPPISEL 922
LQ+NA A ++DR P++E+
Sbjct: 869 PDVLQRNAYRAMQLIDRFPVNEV 891
>gi|119513661|ref|ZP_01632665.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
gi|119461690|gb|EAW42723.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
Length = 872
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 325/927 (35%), Positives = 477/927 (51%), Gaps = 161/927 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L DV+ +VLDE HY++D RGTVWEE IIYCP+E+Q+ LSA
Sbjct: 95 FRNMLYGTPIGQIGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREIQLAALSA 152
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL +Y+ L PLL+E +N +L+
Sbjct: 153 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFYYCNPKGLFPLLNESKTKINPRLA--- 209
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R RK D N R + P + T
Sbjct: 210 -----------------NRGKRKQGDRGRNG-------------------RPEAPGIAYT 233
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 234 LSQLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNDESQILREQIDNFLARNPEAGRS 293
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 294 GQIAPLYRGIAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 353
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L ++E QMAGRAGRRG+D +GHVV VQTP+EG++E L + +PLVSQ
Sbjct: 354 KRTDSGHRLLNASEFLQMAGRAGRRGMDLQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQ 413
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +H +LE+A++L+E+SFG Y+ + +
Sbjct: 414 FTPSYGMVLNLLQ----IH---------------TLEQAKELIERSFGQYMATVHLTPEY 454
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+E+ ++Q + L +I+ A++ A Y++ L++ LK E++ + L+ +
Sbjct: 455 EEISELQTQLAQLHEQIA--AVNEHEL-----AVYEK---LRQRLKVERQLLSTLQEQAV 504
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R +L +G L L L+ K+ V + AV +GK ++
Sbjct: 505 ENRQEEFVMMLSFAVSGTL--LSLKGKNI-AVSIPITAVLVGKIPGGEA----------- 550
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
Y + LG DN WY T K + +Y P V + +
Sbjct: 551 ----------------------PYLICLGQDNRWYVVTTKDVVDLY-AELPRVDVPEHIV 587
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE-VLHM 661
P E LLL G+ L GS ET++ + +P ES E ++M
Sbjct: 588 PPPE---LLLKPGQSL---------------RGSEETFAIAQRIP------ESGEGSIYM 623
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR------ 715
E EQ ++V +++++ E I + + KI + +AR
Sbjct: 624 PPE-------VAEQLSRVTAVQEQL-------EANPIHQSGNVS--KIFKRRARYVELEA 667
Query: 716 -SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 774
+ L ++E+ W+EF+ + ++ + ALD V LG+ AAAIRGENELWL +
Sbjct: 668 ELEELQSQVEEHSQRHWEEFVNLIAILQQFDALD--NLVPTKLGQIAAAIRGENELWLGL 725
Query: 775 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFL 834
V + L L P LAA A+LV E + ++ +E S V+ + L R
Sbjct: 726 VFESGELEHLDPHHLAAAAAALVIETPR----PDSRVHFELSNEVVEALAKLRNIRRKIF 781
Query: 835 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 894
+LQ ++ V +P L+ + +VE WA G W E+ + LD+GD+ R+LRRT+DLL+QIP
Sbjct: 782 QLQRRYNVALPIWLEFELIAIVEQWALGTPWTELCENTTLDEGDVVRILRRTLDLLSQIP 841
Query: 895 KLPDVDQRLQKNAVDASNVMDRPPISE 921
+P + + Q+NA A ++DR P++E
Sbjct: 842 HVPHLSKDFQRNAYRAMQLIDRFPVNE 868
>gi|428777026|ref|YP_007168813.1| DSH domain-containing protein [Halothece sp. PCC 7418]
gi|428691305|gb|AFZ44599.1| DSH domain protein [Halothece sp. PCC 7418]
Length = 884
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 307/920 (33%), Positives = 457/920 (49%), Gaps = 148/920 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ S+G V + L +V+ +VLDE HY++D +RGTVWEE IIYCPK VQ++ LSA
Sbjct: 112 FRNMLYGTSIGEVGT--SLENVEAVVLDECHYMNDPNRGTVWEESIIYCPKSVQLVALSA 169
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+ANA +L WI IHG TEL+ S RP+PL +YFS L PLL+++ +N +L
Sbjct: 170 TIANAGQLTDWINNIHGPTELVKSDHRPIPLEFYFSNPKGLFPLLNDQQTKINPRL---- 225
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP K R + +S P +
Sbjct: 226 --------KPKKKSNKTR------------------------------VSKSDCPSLKAV 247
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L R+MLPAI+FIF+RRGCD +VQ L +L+ E ++ L+ F +P+ R
Sbjct: 248 VEQLAQREMLPAIYFIFSRRGCDQSVQQLNGVSLVTAEESQHIQQHLQNFLERHPEGARA 307
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I+ L +G+AAHHAG LP WK +EELF GLVKVVFATETLAAG+NMPART V+SSLS
Sbjct: 308 GQIEPLTRGIAAHHAGVLPAWKGLVEELFTHGLVKVVFATETLAAGVNMPARTTVISSLS 367
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D RG+VV VQT +EGA+E L +PLVSQ
Sbjct: 368 KRTDQGHRLLRASEFLQMSGRAGRRGMDERGNVVCVQTRFEGAKEAAYLATQKSDPLVSQ 427
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL ++++EA+ L+E+SF Y+ + ++ +
Sbjct: 428 FTPTYGMVLNLL-------------------QRQTIQEAKSLLERSFAEYLANQKLIPEQ 468
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ +E + EI+ +I R+ +++ LQ +LK E+R L R+ +
Sbjct: 469 KAIAQLTQEITRIDFEIA--SIPREY--------FQQYQKLQGQLKEERRILKYLDRQAQ 518
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R AL + + G L +L +Y V +PAV + K +
Sbjct: 519 RDRAPALAAAVSEVRAGDLLYLKGKYVT---VSSPLPAVLIDKVATAG------------ 563
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
+P + L +DN WY T+ + + + P AL
Sbjct: 564 --------------------QPPLLITLAADNRWYIATQGDVCAIGEVLLPESALTNI-- 601
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
R L L G+ +E ME V + EV
Sbjct: 602 --RPPADLELKPGKRRKGDETTAEIAQR--MEN------------VTPPAVDPPEV---- 641
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
+ Q+ K+ L+K++ +++ + + +K T + ++L+ ++
Sbjct: 642 ----------EAQKAKIKDLQKRL-NEHPLQQWGQPKEVIK-TYNRRQQLQEELEQHHSN 689
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
+ + W+EF+ I V+ L+ LGETAAAIRG+NELWL + LR+
Sbjct: 690 TRENQSQHWREFIEICEVLETFGGLENYKPT--SLGETAAAIRGDNELWLGLALRSGEFD 747
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
+L PA LAA +L++E + ++ S + P VI+ ++ L R ++Q +H V
Sbjct: 748 ELSPAYLAAASCALITETPR----PDSESYFPPPMPVIHALSELRGVRRELFQVQRRHRV 803
Query: 843 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
IP L+ G+VE W G+ W E+ LD+GDL R+LRRT D L+QIP +P +
Sbjct: 804 AIPLWLEPDLIGLVEQWVEGIDWNELCEATTLDEGDLVRILRRTRDFLSQIPHVPHLAAS 863
Query: 903 LQKNAVDASNVMDRPPISEL 922
L+ NA A M+R P+ E
Sbjct: 864 LRTNARLAVEQMERFPVLEF 883
>gi|427739317|ref|YP_007058861.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
gi|427374358|gb|AFY58314.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
Length = 889
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 315/924 (34%), Positives = 461/924 (49%), Gaps = 154/924 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSA
Sbjct: 114 FRNMLYGTPIGQVGT--SLIDVEAVVLDECHYMNDRQRGTVWEESIIYCPESIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N+D+L W+ Q+HG T+LI S RPVPL ++F L PLL+E+ +N +L
Sbjct: 172 TVDNSDQLTDWLNQVHGPTDLIYSDYRPVPLDFHFGNSKGLFPLLNEEKTQLNHRLV--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ RK D + I R + P +
Sbjct: 229 ------------------KRKRKRGDKSKQ------------------IARQESPDISYV 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HLR RDMLPAI+FIF+RRGCD AV + D L+D E + + F PDA R
Sbjct: 253 LEHLRQRDMLPAIYFIFSRRGCDRAVAEVGDLWLVDGDEAQRLRPQIDEFLTRNPDAGRA 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ L +G+AAHHAG LP WK+ +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GHVGPLYRGIAAHHAGILPAWKTLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L +E QMAGRAGRRG+D G+VV +QTP+EG++E L + +PLVSQ
Sbjct: 373 KRTDSGHRLLNPSEFLQMAGRAGRRGMDEVGYVVTLQTPFEGSKEAGYLATSHPDPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ SYGMVLNLL +LEEA++L+E+SFG Y+ + +
Sbjct: 433 FSPSYGMVLNLL-------------------QTHTLEEAKELIERSFGQYLANLHLQPEY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ + ++ + ++I+D +S + L++ LK E++ T L+ +
Sbjct: 474 KRIAEFKQHLAQIQTKIAD----------VSAEEVAKYEKLRQRLKVERKLLTTLQEQAA 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASI 540
R L +L +G L L K + E S P AV +GK
Sbjct: 524 ETRKEELSMMLSFAVSGTL----LSIK-GDNAEFSAPITAVLVGK--------------- 563
Query: 541 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG 600
T + + V LG +N WY + + +Y P + ++
Sbjct: 564 ------------------TPGNETPFLVCLGKNNRWYVTSVNDVIDLY-AQIPRIDISP- 603
Query: 601 DALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLH 660
D LP LLL G+ G T + + +P E
Sbjct: 604 DLLP--PSQLLLKPGQ---------------SCSGDEITEAIAAQIP---------EAPD 637
Query: 661 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKE--YKKIVDTVKFTEEKIKRLKARSKR 718
SF + VE + +L+ G YK+ V+ L+A +
Sbjct: 638 DSFMAPEVVEQLRVVTDVQEQLESSPLYGLGNAASIYKRQARAVE--------LEAEIQE 689
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L ++EQ W EF+ + ++ A D V LG+ AAAIRGENELWL +VL +
Sbjct: 690 LRSQVEQQSQRHWDEFITLIEILQYFDAFD--NLVPTELGQMAAAIRGENELWLGLVLNS 747
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
L L P A A+LV+E + ++ +E S+ V + + L R +LQ
Sbjct: 748 GNLDGLAPHHFATAVAALVTETSR----PDSRVFFELSSEVADALASLRPIRRKVFQLQR 803
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898
++GV +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QIP +P
Sbjct: 804 RYGVALPVWLEFELITLVEQWALGMDWVEICENTTLDEGDVVRILRRTLDLLSQIPHVPH 863
Query: 899 VDQRLQKNAVDASNVMDRPPISEL 922
+ Q +++NA A+ ++DR P++E+
Sbjct: 864 LPQEIKRNAQRATQLIDRFPVNEV 887
>gi|427720836|ref|YP_007068830.1| DSH domain-containing protein [Calothrix sp. PCC 7507]
gi|427353272|gb|AFY35996.1| DSH domain protein [Calothrix sp. PCC 7507]
Length = 890
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 324/921 (35%), Positives = 473/921 (51%), Gaps = 147/921 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L DVDV+VLDE HY++D RGTVWEE IIYCP+EVQ+ LSA
Sbjct: 114 FRNMLYGTPIGQIGIS--LIDVDVVVLDECHYMNDRQRGTVWEESIIYCPREVQLAALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL ++F L PLL++ +N +LS
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNDSNTKINPRLS--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R RK D R + P +I T
Sbjct: 229 -----------------NRGKRKQGDRGKGG-------------------RPEAPGIIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL+ RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 253 LSHLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLTRNPEAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGIAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQ
Sbjct: 373 KRTDNGHRLLNASEFLQMAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLATSKPDPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL ++E+AR+L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTIEQARELIERSFGQYMATLHLRPDY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ ++ + L ++I+ A+D +E A E L++ LK E++ L+ + +
Sbjct: 474 DEIAAVEAQLAQLQAQIA--AVDE------NELAIYE--KLRQRLKVERQLLRTLQEQAQ 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+R L +L +G L L L+ K+ V V AV + + + S + N+
Sbjct: 524 EERQEQLSMMLGFAVSGTL--LSLKGKNIT-VPTPVTAVLIEQ--TPGSGETHNL----- 573
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
V LG DN WY + +Y
Sbjct: 574 -------------------------VCLGKDNRWYVANAVDVVDLYA------------E 596
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LPR + L + L K S G+ ET + + +P ++E L++
Sbjct: 597 LPRVEVPLQILPPPDLLLKPGQSR-------RGNEETAAIAQQIP------NAEESLYLP 643
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE-KIKRLKARSKRLTK 721
E EQ ++VA ++ A+ E ++ F + + L+A + L
Sbjct: 644 PE-------VTEQLSRVAAVQ---AQLEAHPLHESGNAGAIFKRQARCIELEAELQVLQG 693
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
++ Q W+EFL + ++ LD V LG+ AAAIRGENELWL +V + L
Sbjct: 694 QVAQQSQRYWEEFLSLIEILQHFGCLD--NLVPTALGQIAAAIRGENELWLGLVFASGEL 751
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 841
+L P LAA A+LV+E + ++ ++ S V + + L R +LQ ++
Sbjct: 752 DNLDPHHLAASIAALVTETPR----PDSKVHFDLSHEVADALAKLRGIRRQIFQLQRRYN 807
Query: 842 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 901
V +P L+ ++E WA G+ W E+ LD+GD+ R+LRRT+DLL+QIP +P++
Sbjct: 808 VALPIWLELDLIALLEQWALGVEWTELCEHTTLDEGDVVRILRRTLDLLSQIPHVPNLPH 867
Query: 902 RLQKNAVDASNVMDRPPISEL 922
LQ+NA A ++DR P++E+
Sbjct: 868 ALQRNAYRAMQLIDRFPVNEV 888
>gi|209524293|ref|ZP_03272843.1| DSH domain protein [Arthrospira maxima CS-328]
gi|376003489|ref|ZP_09781299.1| putative helicase [Arthrospira sp. PCC 8005]
gi|423066797|ref|ZP_17055587.1| DSH domain protein [Arthrospira platensis C1]
gi|209495384|gb|EDZ95689.1| DSH domain protein [Arthrospira maxima CS-328]
gi|375328146|emb|CCE17052.1| putative helicase [Arthrospira sp. PCC 8005]
gi|406711822|gb|EKD07021.1| DSH domain protein [Arthrospira platensis C1]
Length = 904
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 318/929 (34%), Positives = 479/929 (51%), Gaps = 152/929 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSA
Sbjct: 115 FRNMLYGTPIGQVGT--SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N +L WI ++HG TELI+S RPVP+ +YF + PLLD
Sbjct: 173 TVDNQQQLTDWIRRVHGPTELISSDSRPVPVEFYFCNSKGMFPLLD-------------- 218
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
GS+RR I S + ++ + R+S VP++ D
Sbjct: 219 --------------GSKRR------------ISPSLAKSSRARQRGSYNRKSTVPELADI 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ RDMLPAI+FIF+RRGCD AV + +L++ E + + + RF P A R
Sbjct: 253 VSRLQQRDMLPAIYFIFSRRGCDRAVGDVSHLSLVNRKEAAILRDRIDRFIKDTPGAARP 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L KG+A+HHAG LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 313 KQLEPLAKGIASHHAGLLPAWKMFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D GHVV V+TP+EGA+E L + PLVSQ
Sbjct: 373 KRTDDGHRLLRASEFLQMSGRAGRRGMDTIGHVVTVETPFEGAQEAAYLATSKPNPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ SYGMVLNLL SLEEA+ LVE SFG Y + ++ A+
Sbjct: 433 FSPSYGMVLNLL-------------------QTHSLEEAKNLVESSFGQYTSTIHLVPAE 473
Query: 423 DELCKIQKETDVLTSEIS-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+ ++ + + +E+ + +D + E + Q+ LK EKR L+++
Sbjct: 474 QYIKNLEAKLAEVEAELGLGEDLDINT----LEETLADYEKQQQRLKQEKRLLKTLQKQA 529
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
+ + L E G L + L+ K VP + + + + S
Sbjct: 530 REAHTQKMAEALDLAEVGTL--VSLRGK-------HVPTARKSDSEPISAVLVAQTPSPG 580
Query: 542 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 601
+ Y++ LG DN WY +G +V Q +
Sbjct: 581 QA---------------------PYFIVLGRDNRWYI-----------VGAMDVVSLQAE 608
Query: 602 ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM 661
LPR T + L+ EM + KL S G T + ++ +P L + EV +
Sbjct: 609 -LPRLTWADHLEMPEMQF-KLGQSR-------RGDEITEALAVQIPELLVEDTAPEVAN- 658
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
Q T++ ++++ +A E F + +KI+ ++++R KA K +
Sbjct: 659 -------------QITRIEQVEEILATHPAEKFGKPQKIL-------KRLRRRKAIQKEI 698
Query: 720 T---KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVL 776
+ + Q W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL +VL
Sbjct: 699 VDYQEELRQYLERNWREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLGLVL 756
Query: 777 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+ +L+P LA C++LV+E + W + Y+ S V +N L R S +++
Sbjct: 757 MSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSLIKV 812
Query: 837 QEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892
Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D L+Q
Sbjct: 813 QGRHHVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDFLSQ 872
Query: 893 IPKLPDVDQRLQKNAVDASNVMDRPPISE 921
IP +P + L+ NA++A N++DR P++E
Sbjct: 873 IPHVPHLSSTLKDNAIEAKNLIDRFPVNE 901
>gi|414075935|ref|YP_006995253.1| DNA/RNA helicase [Anabaena sp. 90]
gi|413969351|gb|AFW93440.1| DNA/RNA helicase [Anabaena sp. 90]
Length = 893
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 320/925 (34%), Positives = 474/925 (51%), Gaps = 154/925 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSA
Sbjct: 114 FRNMLYGTPIGQIGI--SLADVEAVVLDECHYMNDRQRGTVWEESIIYCPRSVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ +HG T+LI S RPVPL + F L PLL+E +N +L
Sbjct: 172 TVANSDQLTSWLNHVHGHTDLIYSDFRPVPLEFNFCNPKGLFPLLNETNTKINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
VK K G + + R + P +I T
Sbjct: 228 -------VKKAKKGYWEKGKAG----------------------------RPEPPGIIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD AV+ + D L++ E + + F PDA R
Sbjct: 253 LSQLQERDMLPAIYFIFSRRGCDKAVEEVGDLWLVNNDESQILRQQIDEFLRKNPDAGRA 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ L +G+AAHHAG LP WK F+EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQVAPLYRGIAAHHAGILPAWKGFVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QMAGRAGRRG+D +G+VV +QTP+EGA+E L + +PLVSQ
Sbjct: 373 KRTDNGHRLLNASEFLQMAGRAGRRGMDLQGYVVTLQTPFEGAKEASYLATSKADPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL ++E+AR+L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTIEKARELIERSFGQYMSNLHLQPDF 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+EL ++Q E + S+++ AID E ++ EK LR+R++
Sbjct: 474 EELAQVQGELSQIQSQLA--AIDEN-----------------ELMQYEK-----LRQRLK 509
Query: 483 LKR--FSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASI 540
++R F L++ ++ L + LD + M S+
Sbjct: 510 VERQIFKTLQEQAQEDRQAQLAMM------------------------LDFAISGTMLSL 545
Query: 541 NDSFALNRLAQSNG-DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQ 599
ND A++ L + D + SY+V LG +N WY T I +Y P V +
Sbjct: 546 NDRNAMSPLPITVVLVDKAVSVGETSYFVCLGQNNRWYVATSADILDMY-AEIPRVEVPA 604
Query: 600 GDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
P E L L +G+ + G T + + S+ +E
Sbjct: 605 QLIPPSE---LSLKRGQ---------------SIRGDEST------IAIAQSIPNPEEFN 640
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H+ E +EQ +++ +++++ T + I K + L+A + L
Sbjct: 641 HLPTE-------VQEQLSRLTAVQEQL-ETHPIYKSGNIAKIFK-NRARCVELEAELEHL 691
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+++ W+EFL + ++ LD V LG+ AAAIRGENELWL +VL +
Sbjct: 692 QEQVSLQSQRYWEEFLCLIEILQSFECLD--NLVPTKLGQIAAAIRGENELWLGLVLSSG 749
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
L ++ P LAAV A+LV+E + + + S L R S L++Q +
Sbjct: 750 ELDNIGPHNLAAVIAALVTESPR----PDTKVDFNLSPEADAAWLTLQPIRRSVLKVQYR 805
Query: 840 HGVEIPCCLDSQF---SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 896
HGV +P L+++F +VE WA G+ W+ + LD+GD+ R+LRRT+DLL+QIP +
Sbjct: 806 HGVALPVGLETRFISLISLVEQWALGVEWKVLCEKTTLDEGDVVRILRRTLDLLSQIPHV 865
Query: 897 PDVDQRLQKNAVDASNVMDRPPISE 921
P++ L++NA A ++DR P++E
Sbjct: 866 PNLPDMLRRNAQRAMQLIDRFPVNE 890
>gi|443479093|ref|ZP_21068748.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
gi|443015488|gb|ELS30416.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
Length = 874
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 318/929 (34%), Positives = 479/929 (51%), Gaps = 172/929 (18%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+V+VLDE HY++D RGTVWEE I+YCP EVQ++ LSA
Sbjct: 108 FRNMLYGTPIGEVGT--SLTDVEVVVLDECHYMNDRQRGTVWEESIVYCPAEVQLVALSA 165
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+ +L WI ++HG TELI S RPVPL F + PLLD + +N +L
Sbjct: 166 TVANSQQLTDWIHKVHGDTELIYSDFRPVPLEHSFCSSKGFFPLLDSSSQKINPRL---- 221
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP +N ++ +H++ VP +
Sbjct: 222 --------KPL-----------------TNKPLSKEERHKI------------VPSIGAV 244
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ HLR RDMLPAI+FIF+RRGCD +V L + +L++ E ++ + F P+ +
Sbjct: 245 ISHLRQRDMLPAIYFIFSRRGCDKSVTDLGNVSLVNAEESLRLKPQIDAFIAANPEIGKP 304
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK F+EELFQ+GL+KVVFATETLAAGINMPART V+SS+S
Sbjct: 305 AHIDALYRGIAAHHAGILPAWKGFVEELFQQGLIKVVFATETLAAGINMPARTTVISSIS 364
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D G+VV VQTP+EGA+E L + +PLVSQ
Sbjct: 365 KRTDRGHRLLNASEFLQMAGRAGRRGMDEVGYVVTVQTPFEGAKEAANLATSTADPLVSQ 424
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F SYGMV+NLL SLE+AR LVE+SFG Y+ +
Sbjct: 425 FAPSYGMVMNLL-------------------QTHSLEQARDLVERSFGQYLADLNLAPQI 465
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
L + ++ L ++++ ID K + + L++ L+ EKR L ++ E
Sbjct: 466 QNLESVMEQIAKLEKDLAN--IDLKQLEIYDK--------LRDRLREEKRLLKMLAQQSE 515
Query: 483 LKRFSALKDILKDFENGHLPFLC----LQYKDSEG-VEHSVPAVYLGKFDSLDSSKLKNM 537
R + L + P+L L + ++G + H+V A +
Sbjct: 516 EMRLNDLA--------SYAPYLLSGSPLTIRTNKGIIVHTVLAAKV-------------- 553
Query: 538 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
Q +G + ++V LGSDN WYT +G+ ++
Sbjct: 554 -------------QGSG--------QFPWFVCLGSDNRWYT-----------LGYKDIVQ 581
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
D LLLD G++ + G +EG + + + N+ L + + E
Sbjct: 582 VGTD--------LLLD-GDIDYPSKLPLRPG--QSIEGDEASLAIAQNIKPLPESALAPE 630
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKAR 715
VL +Q+ +V L+ ++ R + I V E+ +++ +
Sbjct: 631 VL--------------KQQARVIALESEMNRHPVSKMSDRGAIFKKVNRLEQLQRQIDFQ 676
Query: 716 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLA 773
K + +R ++ W+EF+ +++H +A D Q P G+ AA+RGENELWLA
Sbjct: 677 QKVVNERRQR----HWQEFM---SLVHILQAYDC-LQETQPTDRGKVVAALRGENELWLA 728
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+ L + + +L P LA VCA++VSE + W + S TV + ++ L E R
Sbjct: 729 LCLMSGEMDNLSPHHLATVCAAIVSENSRPDNWIK----FGLSPTVEDALDGLREVRRQL 784
Query: 834 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
+++Q +H V+IP LD + +G+VE WA G+ W E+ + LD+GD+ RL+RRTIDLL QI
Sbjct: 785 MQVQRRHLVDIPAWLDYELTGLVEQWALGMEWSELCQNTNLDEGDIVRLMRRTIDLLYQI 844
Query: 894 PKLPDVDQRLQKNAVDASNVMDRPPISEL 922
P +P++ + + A A+ ++DR P++E+
Sbjct: 845 PHVPNLPIHVYQAAKQAAQLIDRFPVNEV 873
>gi|428318931|ref|YP_007116813.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428242611|gb|AFZ08397.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 912
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 327/942 (34%), Positives = 477/942 (50%), Gaps = 166/942 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYC E+Q++ LSA
Sbjct: 115 FRNMLYGTPIGEVGT--SLTGVETVVLDECHYMNDRQRGTVWEESIIYCSSEIQLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+++L WI ++HG TEL+ S RPVPL ++F+ + + PLLDE GK N +L
Sbjct: 173 TVANSEQLTDWINKVHGPTELVYSDFRPVPLQFHFANQKGIFPLLDETGKRANVRL---- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
V Q ++ + SI P + D
Sbjct: 229 --------------------------------VPKKKQQKVERGSI------PTPSLTDV 250
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + + +L++E E +E++ + F P+A R
Sbjct: 251 LARLDDRDMLPAIYFIFSRRGCDQAVAEVGNFSLVNEAETAELKRIIDDFLQRNPEAERF 310
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ LLKG+AAHHAG LP WK +EELF RGL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 311 GQKEALLKGIAAHHAGILPAWKGLVEELFGRGLIKVVFATETLAAGINMPARTTVISTLS 370
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D GHVV VQT +EGA+E L A +PL SQ
Sbjct: 371 KRTDKGHRLLNASEFLQMAGRAGRRGMDKLGHVVAVQTRFEGAKEASYLATAKADPLASQ 430
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +L+EA++LVE+SFG Y+ + + +
Sbjct: 431 FTPSYGMVLNLL-------------------QTHTLDEAQELVERSFGQYLSTLYLQPQQ 471
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
EL ++Q E VL ++ L E A+ E LQ LK EKR L ++ E
Sbjct: 472 AELDRLQTELAVLEESLAGGG---NVSTLEKELAHYE--KLQARLKEEKRLLKTLLQQAE 526
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHS--VPAVYLGKFDSLDSSKLKNMASI 540
RF + + G + L ++ + H+ VPAV + K + S + N+
Sbjct: 527 EARFKEMSVAVAFAVLGTVLSLKGKHVPTAKRSHTTPVPAVLVAK--TPGSGQAPNL--- 581
Query: 541 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG 600
V LG DN WY + T++ P +++A
Sbjct: 582 ---------------------------VCLGKDNRWYVVAISDVATLH-AELPRLSVA-- 611
Query: 601 DAL-PRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
D L P M L L + C G+ ET S + ++P L + S E +
Sbjct: 612 DTLNPPPEMPLRLGQ-----------------CRLGTEETASIAGSIPQLPTPEPSPEAI 654
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVD-----TVKFTEEKIKRLKA 714
EQ+ K+A L+ K+ E +++ T+ + + + LK
Sbjct: 655 --------------EQQHKIAALEAKL-------EIHPVLEWGNPGTLLKRQRRREELKK 693
Query: 715 RSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIFPLGETAA 762
++ + +E+ W++FL + +++ H R + V LG+ A
Sbjct: 694 EIRKSEQELEKQRARYWEQFLNLIDILLNFGCLERVVSAHGNRDDSSDRLVPTILGQACA 753
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
AIRG+NELWL + L + +L P LAA CA+LV+E + W + Y S V+
Sbjct: 754 AIRGDNELWLGLSLMSAEFDELDPHHLAAACAALVTEVSRPDSWTH----YSLSPEVLAP 809
Query: 823 INVLDEH-RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
++ L + R ++Q +H IP L+ + +VE WA G+ W E++ +LD+GD+ R
Sbjct: 810 LDNLQKGLRRRLFQVQYRHEAAIPIWLERELVTLVEQWALGVEWLELISHTSLDEGDVVR 869
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 923
+LRRT+D L+QIP +P V L++NA A ++DR P++E A
Sbjct: 870 ILRRTLDFLSQIPHVPHVSDSLRRNACRAMQLIDRFPVNEAA 911
>gi|428224981|ref|YP_007109078.1| DSH domain-containing protein [Geitlerinema sp. PCC 7407]
gi|427984882|gb|AFY66026.1| DSH domain protein [Geitlerinema sp. PCC 7407]
Length = 930
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 321/925 (34%), Positives = 462/925 (49%), Gaps = 154/925 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP +VQ++ LSA
Sbjct: 151 FRNMLYGTPIGEVGT--SLVGVEAVVLDECHYMNDRQRGTVWEESIIYCPPDVQLVALSA 208
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+++L WI ++HG TELI S RPVPL + FS L PLLD K +N +L
Sbjct: 209 TVANSEQLTEWIHRVHGPTELIYSDFRPVPLQFGFSNVKGLFPLLDNNQKKINPQL---- 264
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
++ + + GG++R + + + P V
Sbjct: 265 -----AKSRRGRKGGNQR------------------------------VPQEECPGVTTV 289
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ RDMLPAI+FIF+RRGCD AV+ L D L+ E ++ + F P+ R
Sbjct: 290 VGQLQERDMLPAIYFIFSRRGCDRAVEALGDMALVTPEEARQLREQVDAFLARNPEVGRV 349
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I+ L +GVA+HHAG LP WK+F+EELFQ+GLVKVVFATETLAAGINMPART V+SSLS
Sbjct: 350 SQIEPLYRGVASHHAGLLPAWKAFVEELFQQGLVKVVFATETLAAGINMPARTTVISSLS 409
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L +E QMAGRAGRRG+D G+VV QTP+EGA E L A +PLVSQ
Sbjct: 410 KRTDRGHRLLNPSEFLQMAGRAGRRGMDTMGYVVTAQTPFEGAREASYLATAQADPLVSQ 469
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL S++EAR+LVE+SFG Y+ + + +
Sbjct: 470 FTPSYGMVLNLL-------------------QTHSVDEARELVERSFGQYLSTLYLQPQQ 510
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ E + L ++I + D A L + LK E+R L+++ E
Sbjct: 511 RAIADLEAEYEQLEAQIEEVDWD----------ALAHYEKLSQRLKEERRLLKILQQQAE 560
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R + + LK G + L K G +PAV + K +
Sbjct: 561 EVRTKGMVEALKFAVAGTI----LSIK---GKAAPLPAVLVTKVHG------------SG 601
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
F Y V LG DN WY T + +Y P +A+
Sbjct: 602 QF--------------------PYLVCLGEDNRWYVVTTGDVVALYG-EIPRLAIVDDLV 640
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS-ESDEVLHM 661
LP E L L G++ SE + C E E + ++ P L SL+ E L
Sbjct: 641 LPPE---LPLKPGQV----RRSSEETAIIC-ELLRERLAVGIDDPSLMSLAPEVSGQLER 692
Query: 662 SFEYHDAVENYK--EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
+ E +E + + R + + LK++ +RL + +
Sbjct: 693 ATELEQELEAHPVHQWRNRASILKRQ------------------------RRLSSLRSEI 728
Query: 720 TKRIEQIEPSG---WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVL 776
+R E+++ W+EFL + +++ L +GE AAIRG+NELWL M +
Sbjct: 729 NQRQEELDRQSHRHWEEFLSLIDILQAFGCLHGYKPT--EIGEAIAAIRGDNELWLGMAM 786
Query: 777 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+ L+P AA CA+LV+E + +W Y S V +N L R +L
Sbjct: 787 LSGSFDALQPHHFAAACAALVTEVSRPDIWTR----YTSSPEVDEALNDLRGLRRQLFQL 842
Query: 837 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 896
Q +H V +P L+ F +VE WA W E+ + +LD+GD+ R+LRRT+D L+Q+P +
Sbjct: 843 QRRHQVAMPIWLEEDFISLVEQWALEADWVELCNNTSLDEGDVVRVLRRTLDFLSQLPHV 902
Query: 897 PDVDQRLQKNAVDASNVMDRPPISE 921
P + + +++NA A ++DR P+SE
Sbjct: 903 PHLPEAMRRNAYQAIRLIDRFPVSE 927
>gi|359460541|ref|ZP_09249104.1| DEAD/DEAH box-like helicase [Acaryochloris sp. CCMEE 5410]
Length = 909
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 310/904 (34%), Positives = 461/904 (50%), Gaps = 150/904 (16%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 78
+ L V ++LDE HY++D RGTVWEE IIYCP E+Q+I LSATVANA +L W+ +H
Sbjct: 124 TSLEGVTSVILDECHYMNDRQRGTVWEESIIYCPAEIQLIALSATVANAQQLVDWMSWVH 183
Query: 79 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
G T+LI S RPVPL ++F+ L PLL++K +N +L
Sbjct: 184 GPTQLIESDWRPVPLAFFFANAKGLFPLLNQKHTALNPRL-------------------- 223
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ ++KH +HQ RR+ P VI L HLR R+MLPAI+FI
Sbjct: 224 -KAQAKKHHGH----------RHQ---------RRADSPDVIAVLQHLREREMLPAIYFI 263
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258
F+R+GCD V+ NLL E +++++ ++ FR +PD + + G+AAHHAG
Sbjct: 264 FSRKGCDRTVESTAHLNLLTPAESAQMQIQIETFRQQHPDVGQPQQFAAIAHGIAAHHAG 323
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP WK+++EELFQ GL+KVVFATETLAAGINMPART V++SLSKRT G LT++E+
Sbjct: 324 LLPQWKTWVEELFQAGLIKVVFATETLAAGINMPARTTVIASLSKRTDLGHRLLTASEVL 383
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D +G+V+ VQTP+EGA+E L G +PLVSQFT SYGMVLNLL
Sbjct: 384 QMAGRAGRRGMDTQGYVITVQTPFEGAKEAAYLATIGPDPLVSQFTPSYGMVLNLL---- 439
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
R+L+E+++L++QSFG Y+ S + K + +Q+E +L
Sbjct: 440 ---------------QTRTLDESKRLIDQSFGQYIASVQLSPQKQAIADLQQELTLL--- 481
Query: 439 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 498
R+ ++E A K LQ+ LK E+R L ++ + S L +L E+
Sbjct: 482 -------RQKLGTINEGALKSYQKLQQRLKEERRLLKILDQQAQETLASELALLLDHIES 534
Query: 499 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYD 558
G + L + K+ ++ F N + +
Sbjct: 535 GAI---------------------------LSFTPPKSKMPVSGVFVANIPSPGHF---- 563
Query: 559 TQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEML 618
Y V L +N W+ + V + LAQ L L KG+
Sbjct: 564 ------PYLVCLSQNNHWFIISR---GDVMHLDGQLDRLAQAPQL--TVPPSLTKKGQ-- 610
Query: 619 WEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK 678
+G + + +P S+ + EV H + AVE+ +Q
Sbjct: 611 -------------SQQGDATSLQVAQQIPD-STWQPAPEVTHQQ-QRLQAVESQMQQHPA 655
Query: 679 VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 738
A + F +++ V T++ ++L R + ++ + W+ F+ +
Sbjct: 656 HASRQDH----SKFARWQRRVTTLE------RQLHDRETKFNRQFQH----QWQAFMALV 701
Query: 739 NVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
++ + R L D+ LG+ AA RGENELWL + +++ L L P LAAVCA+LV
Sbjct: 702 EILQKFRGLEDLRPT---ELGQITAAFRGENELWLGLACQSQALNALDPHILAAVCAALV 758
Query: 798 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 857
+ + +W + PS V + L R ++ Q ++ P CLD++ G+VE
Sbjct: 759 VDNTRPDVWLK----FRPSAAVQQAVKPLRPIRRQLIQTQHRYDAPFPVCLDTELVGLVE 814
Query: 858 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRP 917
WA G++W ++ +LD GDL R+LRRT+DLL+QIP +P + + L+KNA A +M+R
Sbjct: 815 QWALGISWNDLCDATSLDAGDLVRILRRTVDLLSQIPYVPYLSEELKKNARRAEQLMNRF 874
Query: 918 PISE 921
PIS+
Sbjct: 875 PISD 878
>gi|427707494|ref|YP_007049871.1| DSH domain-containing protein [Nostoc sp. PCC 7107]
gi|427359999|gb|AFY42721.1| DSH domain protein [Nostoc sp. PCC 7107]
Length = 890
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 335/934 (35%), Positives = 483/934 (51%), Gaps = 173/934 (18%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+++L W+ +HG T+LI S RPVPL + F L PLL+E +N +L
Sbjct: 172 TVANSEQLTDWLNHVHGPTDLIYSDFRPVPLEFNFCNPKGLFPLLNESKNKINPRL---- 227
Query: 123 LQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
VK ++ G G R +N R A P +I
Sbjct: 228 -------VKKHRKGQGDRGKNGRPEA-----------------------------PGIIY 251
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241
TL L+ RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 252 TLSQLQQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNGQESQILREQIDDFLNRNPEAGR 311
Query: 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
I L +GVAAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+L
Sbjct: 312 SGQIAPLYRGVAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTL 371
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
SKRT +G L ++E QMAGRAGRRG+D +G+VV VQTP+EG++E L + +PLVS
Sbjct: 372 SKRTDTGHRLLNASEFLQMAGRAGRRGMDKQGYVVTVQTPFEGSKEAAYLATSKADPLVS 431
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
QFT SYGMVLNLL ++E+AR+LVE+SFG Y+ + +
Sbjct: 432 QFTPSYGMVLNLL-------------------QTHTIEQARELVERSFGQYIANLHLKPE 472
Query: 422 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
DE+ ++Q++ L +I+ A+D SE A E L++ LK E++ L+++
Sbjct: 473 YDEIAELQEQLAQLQEQIA--AVDE------SEIAVYE--KLRQRLKVERQLLKTLQQQA 522
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
+ R L +L +G L L L+ K+ V + AV +GK
Sbjct: 523 QDDRQEELVMMLGFAVSGTL--LSLKGKNIT-VSTPITAVLVGKSPG------------- 566
Query: 542 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNVAL 597
LAQ+ Y+V LG DN WY T + + ++ R+ P
Sbjct: 567 -------LAQT------------PYFVCLGQDNRWYVATTEDVMNLHAEMPRLDVP---- 603
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
D LP LL G+ G+ +T + + ++P E E
Sbjct: 604 --ADMLP--PPELLFKPGQ---------------SYRGNEQTAAIAQSIP------EPGE 638
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIA----RTEG-----FKEYKKIVDTVKFTEEK 708
H+S E EQ ++V ++++I R G FK + V+
Sbjct: 639 PFHLSPE-------VAEQLSRVTAIEEQIENHPLRQSGNASTIFKRRARYVE-------- 683
Query: 709 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768
L+A ++L +++EQ W+EFL + ++ + LD V LG AAAIRGEN
Sbjct: 684 ---LEAELEQLQEQVEQQSQRHWEEFLNLITILQQFGCLD--NLVPTELGRIAAAIRGEN 738
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 828
ELWL +V + L L P LAA A+LV+E + ++ ++ S V + L
Sbjct: 739 ELWLGLVFASGQLNQLDPHHLAAAIAALVTETPR----PDSRVNFDLSQEVAEALAKLRN 794
Query: 829 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888
R +LQ ++ V +P L+ + +VE WA G+ W E+ LD+GD+ R+LRRT+D
Sbjct: 795 IRRQMFQLQRRYNVALPIWLEFELIAIVEKWALGMEWTELCSHTTLDEGDVVRILRRTLD 854
Query: 889 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
LL+QIP +P + + LQ+NA A ++DR P++E+
Sbjct: 855 LLSQIPHVPHLPEILQRNAYRAMQLIDRFPVNEV 888
>gi|409993430|ref|ZP_11276571.1| DSH-like protein [Arthrospira platensis str. Paraca]
gi|409935699|gb|EKN77222.1| DSH-like protein [Arthrospira platensis str. Paraca]
Length = 912
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 317/932 (34%), Positives = 482/932 (51%), Gaps = 158/932 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSA
Sbjct: 123 FRNMLYGTPIGEVGT--SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSA 180
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N +L WI ++HG TELI+S RPVP+ +YF + PLLD
Sbjct: 181 TVDNQQQLTDWIRRVHGPTELISSDSRPVPVEFYFCNSKGMFPLLD-------------- 226
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
GS+RR I S + ++ + R+S VP++ D
Sbjct: 227 --------------GSKRR------------ISPSLAKSSRARQRGSYNRKSGVPELADI 260
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ RDMLPAI+FIF+RRGCD AV + +L+ E + + RF P A R
Sbjct: 261 VLRLKQRDMLPAIYFIFSRRGCDRAVGDISHLSLVSPKEAQILRDRINRFIKETPGAARP 320
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L KG+A+HHAG LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 321 KQLEPLAKGIASHHAGLLPAWKIFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLS 380
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D GHVV V+TP+EGAEE L + PLVSQ
Sbjct: 381 KRTDDGHRLLRASEFLQMSGRAGRRGMDTIGHVVTVETPFEGAEEAAYLATSKPNPLVSQ 440
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ SYGMVLNLL SLE+A+ LVE+SFG Y+ + ++ A+
Sbjct: 441 FSPSYGMVLNLL-------------------QTHSLEKAKNLVERSFGQYISTLSLVPAE 481
Query: 423 DELCKIQKETDVLTSEIS-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+ ++ + + +E+ + +D + E E Q+ LK EKR L+++
Sbjct: 482 QHIKNLETKLAQVEAELGLGEDLDINT----LEDTLAEYEKQQQRLKQEKRLLKTLQKQA 537
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--AS 539
R + + A+ L F +L S + K++ A
Sbjct: 538 REARTQKMAE----------------------------ALDLAAFGTLVSLRGKHVPTAR 569
Query: 540 INDSFALNR--LAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
+DS ++ +AQ+ + Y++ LG DN WY + ++
Sbjct: 570 KSDSPPISAVLVAQTPSPG------QAPYFLCLGRDNRWYIVAAMDVVNLH--------- 614
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
LPR T L+ EM + KL S G T + ++ +P L + E
Sbjct: 615 ---AELPRLTWVDHLEMPEMQF-KLGQSR-------RGDEITEALAVQIPELLVADTAPE 663
Query: 658 VLHMSF---EYHDAVENYKEQR-TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 713
V++ + + + + Q+ K ++ K+++R + K+IVD +E++++
Sbjct: 664 VVNQITRIEQVEEILATHPAQKFGKPQKILKRLSRRSAIQ--KEIVD----YQEELRQYL 717
Query: 714 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 773
R+ W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL
Sbjct: 718 ERN--------------WREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLG 761
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+VL + +L+P LA C++LV+E + W + Y+ S V +N L R S
Sbjct: 762 LVLMSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSL 817
Query: 834 LELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+++Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D
Sbjct: 818 IKVQGRHRVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDF 877
Query: 890 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
L+QIP +P + L+ NA++A N++DR P++E
Sbjct: 878 LSQIPHVPHLSSTLKDNAIEAKNLIDRFPVNE 909
>gi|291571682|dbj|BAI93954.1| putative helicase [Arthrospira platensis NIES-39]
Length = 904
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 317/932 (34%), Positives = 482/932 (51%), Gaps = 158/932 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSA
Sbjct: 115 FRNMLYGTPIGEVGT--SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N +L WI ++HG TELI+S RPVP+ +YF + PLLD
Sbjct: 173 TVDNQQQLTDWIRRVHGPTELISSDSRPVPVEFYFCNSKGMFPLLD-------------- 218
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
GS+RR I S + ++ + R+S VP++ D
Sbjct: 219 --------------GSKRR------------ISPSLAKSSRARQRGSYNRKSGVPELADI 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ RDMLPAI+FIF+RRGCD AV + +L+ E + + RF P A R
Sbjct: 253 VLRLKQRDMLPAIYFIFSRRGCDRAVGDISHLSLVSPKEAQILRDRINRFIKETPGAARP 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L KG+A+HHAG LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 313 KQLEPLAKGIASHHAGLLPAWKIFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D GHVV V+TP+EGAEE L + PLVSQ
Sbjct: 373 KRTDDGHRLLRASEFLQMSGRAGRRGMDTIGHVVTVETPFEGAEEAAYLATSKPNPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ SYGMVLNLL SLE+A+ LVE+SFG Y+ + ++ A+
Sbjct: 433 FSPSYGMVLNLL-------------------QTHSLEKAKNLVERSFGQYISTLSLVPAE 473
Query: 423 DELCKIQKETDVLTSEIS-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+ ++ + + +E+ + +D + E E Q+ LK EKR L+++
Sbjct: 474 QHIKNLETKLAQVEAELGLGEDLDINT----LEDTLAEYEKQQQRLKQEKRLLKTLQKQA 529
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--AS 539
R + + A+ L F +L S + K++ A
Sbjct: 530 REARTQKMAE----------------------------ALDLAAFGTLVSLRGKHVPTAR 561
Query: 540 INDSFALNR--LAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
+DS ++ +AQ+ + Y++ LG DN WY + ++
Sbjct: 562 KSDSPPISAVLVAQTPSPG------QAPYFLCLGRDNRWYIVAAMDVVNLH--------- 606
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
LPR T L+ EM + KL S G T + ++ +P L + E
Sbjct: 607 ---AELPRLTWVDHLEMPEMQF-KLGQSR-------RGDEITEALAVQIPELLVADTAPE 655
Query: 658 VLHMSF---EYHDAVENYKEQR-TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 713
V++ + + + + Q+ K ++ K+++R + K+IVD +E++++
Sbjct: 656 VVNQITRIEQVEEILATHPAQKFGKPQKILKRLSRRSAIQ--KEIVD----YQEELRQYL 709
Query: 714 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 773
R+ W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL
Sbjct: 710 ERN--------------WREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLG 753
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+VL + +L+P LA C++LV+E + W + Y+ S V +N L R S
Sbjct: 754 LVLMSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSL 809
Query: 834 LELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+++Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D
Sbjct: 810 IKVQGRHRVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDF 869
Query: 890 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
L+QIP +P + L+ NA++A N++DR P++E
Sbjct: 870 LSQIPHVPHLSSTLKDNAIEAKNLIDRFPVNE 901
>gi|411120335|ref|ZP_11392709.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
gi|410709716|gb|EKQ67229.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
Length = 898
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 318/918 (34%), Positives = 459/918 (50%), Gaps = 145/918 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP ++Q++ LSA
Sbjct: 122 FRNMLYGTPIGEVGT--SLVGVEAVVLDECHYMNDRQRGTVWEESIIYCPADIQLVALSA 179
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N+D+L WI Q+HG TELI S RPVPL +++ T L PLLD+ K ++ +L
Sbjct: 180 TVDNSDQLTDWIQQVHGPTELIYSDFRPVPLQFHYCTPKGLFPLLDDTQKRIHPRL---- 235
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP GG R +K R + P +
Sbjct: 236 --------KP--KGGQAGRVGKKSP-------------------------RQESPSLAYV 260
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD AV L D + +D E +++ + F P+A R
Sbjct: 261 LSQLQQRDMLPAIYFIFSRRGCDQAVTNLGDISFVDRNEAIQLKEQIDAFLERNPEAGRA 320
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 321 GQVEPLYRGIAAHHAGLLPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLS 380
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D GHVV VQTP+EGA E L AG +PLVSQ
Sbjct: 381 KRTDLGHRLLNASEFLQMAGRAGRRGMDVLGHVVTVQTPFEGAREAAYLATAGADPLVSQ 440
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +L+EA++L+E+SFG Y+ + + +
Sbjct: 441 FTPSYGMVLNLL-------------------QTHTLDEAKELIERSFGQYLATLYLRPQQ 481
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ + ++ E L +++ +++D + LL+ + LQE LK E+R L+ + +
Sbjct: 482 EAIAHLEAELAQLQAQV--ESVDWE---LLA-----QYEKLQERLKEERRLLKILQSQAD 531
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R + L G + L QY V + AV + K
Sbjct: 532 DVRMHDMAIALSFAVAGTILSLKGQYVP---VPEPISAVLVTK----------------- 571
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
+ + Y V LG DN WY T + + R P +
Sbjct: 572 --------TAGAGQF-------PYLVCLGQDNRWYVTTVSDVVDL-RAEIPRIVAVDHLT 615
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP E + L G+ +GS ET + + +P + S +H
Sbjct: 616 LPPE---MPLKPGQ---------------SRKGSAETEAIAERLPDPVPSANSAPEVHTQ 657
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
+ VE + Q V R R K K+I +++ ++L +S R
Sbjct: 658 QQRLQEVER-QIQNHPVHRWSN---RGTILKRQKRIQSIHTELQDRREKLDRQSHRY--- 710
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
W+ FL + +++ L+ V LGE AAIRG+NELWL + L +
Sbjct: 711 --------WEAFLDLIDILRNFGCLE--ELVPTALGEVTAAIRGDNELWLGLALTSGEFD 760
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
DL+P AA CA+LV+E + W Y+ + V + L R S +LQ ++ V
Sbjct: 761 DLEPHHFAAACAALVTEVSRPDSWTR----YDLPSPVEEALGGLRGIRHSLFKLQRRYQV 816
Query: 843 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
+P L+ F G+VE WA G W + + +LD+GD+ R+LRRT+D L+QIP +P +
Sbjct: 817 VLPIWLEYDFVGLVEQWALGSDWLALCENTSLDEGDIVRVLRRTLDFLSQIPHVPHLSDS 876
Query: 903 LQKNAVDASNVMDRPPIS 920
L++ ++ A ++DR P+S
Sbjct: 877 LKQKSIQAIQLIDRFPVS 894
>gi|334117201|ref|ZP_08491293.1| DSH domain protein [Microcoleus vaginatus FGP-2]
gi|333462021|gb|EGK90626.1| DSH domain protein [Microcoleus vaginatus FGP-2]
Length = 915
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 326/942 (34%), Positives = 476/942 (50%), Gaps = 166/942 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYC E+Q++ LSA
Sbjct: 115 FRNMLYGTPIGEVGT--SLTGVETVVLDECHYMNDRQRGTVWEESIIYCSSEIQLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+++L WI ++HG TEL+ S RPVPL ++F+ + + PLLDE GK N +L
Sbjct: 173 TVANSEQLTDWINKVHGPTELVYSDFRPVPLQFHFANQKGIFPLLDETGKRANVRL---- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
V Q ++ + SI P + D
Sbjct: 229 --------------------------------VPKKKQQKVERGSI------PTPSLTDV 250
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + + +L++E E +E++ + F P+A R
Sbjct: 251 LARLDDRDMLPAIYFIFSRRGCDQAVAEVGNFSLVNEAETAELKRIIDDFLQRNPEAERF 310
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ LLKG+AAHHAG LP WK +EELF RGL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 311 GQKEALLKGIAAHHAGILPAWKGLVEELFGRGLIKVVFATETLAAGINMPARTTVISTLS 370
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D GHVV VQT +EGA+E L A +PL SQ
Sbjct: 371 KRTDKGHRLLNASEFLQMAGRAGRRGMDKLGHVVAVQTRFEGAKEASYLATAKADPLASQ 430
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +L+EA++LVE+SFG Y+ + + +
Sbjct: 431 FTPSYGMVLNLL-------------------QTHTLDEAQELVERSFGQYLSTLYLQPQQ 471
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
EL ++Q E VL + A L E A+ E LQ LK +KR L ++ E
Sbjct: 472 SELDRLQTELAVLEQSL---AAGGNVSTLEKELAHYE--KLQGRLKEDKRLLKILLQQAE 526
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHS--VPAVYLGKFDSLDSSKLKNMASI 540
RF + + G + L ++ + H+ VPAV + K S + N+
Sbjct: 527 EARFKEMSVAVAFAVLGTVLSLKGKHVPTAKRSHTNPVPAVLVAKIAG--SGQAPNL--- 581
Query: 541 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG 600
V LG DN WY + T++ P +++A
Sbjct: 582 ---------------------------VCLGKDNRWYVVAISDVATLH-AELPRLSVA-- 611
Query: 601 DAL-PRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
D L P M L L + C + ET S + ++P L + S E +
Sbjct: 612 DTLNPPSEMPLRLGQ-----------------CRLANEETASIAASIPELPTPEPSPEAI 654
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVD-----TVKFTEEKIKRLKA 714
EQ+ K+A L+ ++ E ++++ T+ + + + LK
Sbjct: 655 --------------EQQQKIAALEAQL-------EVHRVLEWGNPGTLLKRQRRREELKK 693
Query: 715 RSKRLTKRIEQIEPSGWKEFLR----------ISNVIHETRALDINTQVIFP--LGETAA 762
++ + +E+ W++FL + V+ T D ++ + P LG+ A
Sbjct: 694 EIRKSEQELEKQRARYWEQFLNLIDILLNFGCLERVVSATGNRDDSSDRLVPTILGQACA 753
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
AIRG+NELWL + L + +L P LAA CA+LV+E + W + Y S V+
Sbjct: 754 AIRGDNELWLGLSLMSAEFDELDPHHLAAACAALVTEVSRPDSWTH----YSLSPEVLAP 809
Query: 823 INVLDEH-RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
++ L + R ++Q +H IP L+ +VE WA G+ W E++ +LD+GD+ R
Sbjct: 810 LDNLQKGLRRRLFQVQYRHEAAIPIWLERDLVTLVEQWALGVEWLELISHTSLDEGDVVR 869
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 923
+LRRT+D L+QIP +P V L++NA A ++DR P++E A
Sbjct: 870 ILRRTLDFLSQIPHVPHVSDSLRRNACRAMQLIDRFPVNEAA 911
>gi|158337176|ref|YP_001518351.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
Length = 909
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 306/904 (33%), Positives = 457/904 (50%), Gaps = 150/904 (16%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 78
+ L V ++LDE HY++D RGTVWEE IIYCP ++Q+I LSATVANA +L W+ +H
Sbjct: 124 TSLEGVTSVILDECHYMNDRQRGTVWEESIIYCPADIQLIALSATVANAQQLVDWMSWVH 183
Query: 79 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
G T+LI S RPVPL ++F+ L PLL++K +N +L
Sbjct: 184 GPTQLIESDWRPVPLAYFFANAKGLFPLLNQKHTALNPRL-------------------- 223
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ ++KH +HQ RR+ P VI L HLR R+MLPAI+FI
Sbjct: 224 -KAQAKKHHGH----------RHQ---------RRADSPDVIAVLQHLREREMLPAIYFI 263
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258
F+R+GCD V+ NLL E +++++ ++ FR +PD R + G+AAHHAG
Sbjct: 264 FSRKGCDRTVESTAHLNLLTPAESAQMQIQIETFRQQHPDVGRPQQFAAIAHGIAAHHAG 323
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP WK+++EELFQ GL+KVVFATETLAAGINMPART V++SLSKRT G LT++E+
Sbjct: 324 LLPQWKTWVEELFQAGLIKVVFATETLAAGINMPARTTVIASLSKRTDLGHRLLTASEVL 383
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D +G+V+ VQTP+EGA+E L G +PLVSQFT SYGMVLNLL
Sbjct: 384 QMAGRAGRRGMDTQGYVITVQTPFEGAKEAAYLATIGPDPLVSQFTPSYGMVLNLL---- 439
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
R+L+E+++L++QSFG Y+ S ++ + +
Sbjct: 440 ---------------QTRTLDESKRLIDQSFGQYIAS----------VQLSPQKQAIADL 474
Query: 439 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 498
+ + + + E A K LQ+ LK E R L ++ + S L IL E+
Sbjct: 475 QQELTLLLQKLGTIDEGALKSYQKLQQRLKEELRLLKILDQQAQETLASELTLILDHIES 534
Query: 499 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYD 558
G + L + K+ I F N + +
Sbjct: 535 GAI---------------------------LSFTPPKSKTPIAGVFVANIPSPGHF---- 563
Query: 559 TQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEML 618
Y V L +N W+ +A+GD + + + + L
Sbjct: 564 ------PYLVCLSQNNHWFV------------------IARGDVMHLDGQLNRPTQAQQL 599
Query: 619 WEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK 678
+ ++ G +G + + VP S+ + EV+H + AVE+ +Q
Sbjct: 600 TVPPSLTKKGQ--TQQGDATSLQVAEQVPD-STWQPAPEVMHQQ-QRLQAVESQMQQHPA 655
Query: 679 VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 738
A + F +++ V T++ ++L R + ++ + W+ F+ +
Sbjct: 656 HASRQDH----SKFARWQRRVTTLE------RQLHDRETKFNRQFQH----QWQAFMALV 701
Query: 739 NVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
++ + R L D+ LG+ AA RGENELWL + +++ L L P LAAVCA+LV
Sbjct: 702 EILQKFRGLEDLRPT---ELGQITAAFRGENELWLGLACQSQALNTLDPHILAAVCAALV 758
Query: 798 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 857
+ + +W + PS TV + L R ++ Q ++ P CLD+ G+VE
Sbjct: 759 VDNTRPDVWLK----FRPSATVQQAVKPLRPIRRQLIQTQHRYEAPFPVCLDTDLVGLVE 814
Query: 858 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRP 917
WA G++W ++ +LD GDL R+LRRT+DLL+QIP +P + + L+KNA A M+R
Sbjct: 815 QWALGISWSDLCDATSLDAGDLVRILRRTVDLLSQIPYVPYLSEELKKNARRAEQPMNRF 874
Query: 918 PISE 921
PIS+
Sbjct: 875 PISD 878
>gi|434392251|ref|YP_007127198.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
gi|428264092|gb|AFZ30038.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
Length = 892
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 324/920 (35%), Positives = 462/920 (50%), Gaps = 142/920 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +VLDE HY++D RGTVWEE IIYCP +Q++ LSA
Sbjct: 113 FRNMLYGTPIGEVGT--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPSTIQLVALSA 170
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN+ +L WI Q+HG TELI S RPVPL +YF L PLLD +N +L
Sbjct: 171 TIANSQQLTDWINQVHGPTELIYSEFRPVPLEFYFCNPKGLFPLLDNSKSKINPRL---- 226
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ KP S+ R R++ R + P + T
Sbjct: 227 ------KPKPGSGDASQARGGRRNGA------------------------RLESPSLEYT 256
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L ++DMLPAI+FIF+RRGCD AV LE +L++ E +++ + F P+A R
Sbjct: 257 ISRLAAKDMLPAIYFIFSRRGCDQAVANLE-MSLVNSAEAAQLRQQIDEFLARNPEAGRA 315
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I+ L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 316 GQIEPLYRGIAAHHAGILPTWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 375
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L +E QMAGRAGRRG+D GHVV +QTP+EGA+E L A +PLVSQ
Sbjct: 376 KRTDRGHRLLNPSEFLQMAGRAGRRGMDKIGHVVTLQTPFEGAKEAAYLATAQPDPLVSQ 435
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LEEAR+L+E+SFG Y+ + +
Sbjct: 436 FTPSYGMVLNLL-------------------QTHTLEEARELIERSFGQYLATLYLKPHY 476
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ L +Q + + +++ ++ID + + A E L++ +K E++ L + +
Sbjct: 477 ESLAHLQAQVAQIEAQL--ESID------MEQVAKYE--KLRQRIKVERQLLKTLHEQAQ 526
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L L +G L L L+ K +PAV + K +
Sbjct: 527 EARVEQLGLTLSFAVSGTL--LSLRGKHVPTAT-PIPAVLVAKTPGAGQA---------- 573
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
Y V LG DN WY + +Y P + LA D
Sbjct: 574 ----------------------PYLVCLGQDNRWYVVMTSDVVDLY-AELPRLELA-SDL 609
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP M L K S G+ ET + + +P ++ L+ + EVL
Sbjct: 610 LPPAEMPL----------KPGQSR-------RGNQETVAIARQIPDVAQLNIAPEVL--- 649
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
Q+ KVA L+ ++ K T+ KI +L+A
Sbjct: 650 -----------AQQAKVAALEAQLEAHPVHKSDNPA--TILKRRNKILQLQAEIVERQAE 696
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
+ Q+ W+EFL + ++ L N V LG+ AAAIRG+NELWL + L +
Sbjct: 697 LSQLSQHHWEEFLHLIEILQRFGCL--NELVPTHLGQVAAAIRGDNELWLGLALSSGEFD 754
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
L P LAA A+LV+E + W Y ++ V + L R +LQ ++ V
Sbjct: 755 QLDPHHLAAAIAALVTENTRPDSWVR----YTLASEVEEALAGLRSIRRQLFQLQRRYNV 810
Query: 843 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
P L+ +VE WA G+ W E+ + +LD+GD+ RLLRRT+DLL+QIP +P + +
Sbjct: 811 AFPIWLEYDLVALVEQWALGVEWSELCANTSLDEGDVVRLLRRTLDLLSQIPHIPYLSEA 870
Query: 903 LQKNAVDASNVMDRPPISEL 922
LQ+NA A ++DR P++E+
Sbjct: 871 LQRNAYRAMQLLDRFPVNEI 890
>gi|428303828|ref|YP_007140653.1| DSH domain-containing protein [Crinalium epipsammum PCC 9333]
gi|428245363|gb|AFZ11143.1| DSH domain protein [Crinalium epipsammum PCC 9333]
Length = 896
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 318/925 (34%), Positives = 452/925 (48%), Gaps = 151/925 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 114 FRNMLYGTRIGEVGTS--LAHVETVVLDECHYMNDRQRGTVWEESIIYCPPEIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+N+ L WI +HG TELI S RPVPL +YF L PLLD+ K +N +L
Sbjct: 172 TVSNSQNLTAWISSVHGPTELIYSDFRPVPLQFYFGNPKGLFPLLDDYKKKINPRLI--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+++ +D TS G+ R + P +
Sbjct: 229 --------------------AKRKSD-------TSKGKGA----------RPETPALGFI 251
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L RDMLPAI+FIF+RRGCD AV+ L+ L++ E +E++ + F PDA R
Sbjct: 252 VNQLAQRDMLPAIYFIFSRRGCDQAVEELKGLMLVNRAETAELKQRIDDFLARNPDAGRA 311
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +G+AAHHAG LP WK +EELF GLVKVVFATETLAAGINMPART V+S+LS
Sbjct: 312 GQVEPLYRGIAAHHAGILPAWKGLVEELFGLGLVKVVFATETLAAGINMPARTTVISTLS 371
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D G+VV +QT +EGA+E L A EPLVSQ
Sbjct: 372 KRTDDGHRLLKASEFLQMAGRAGRRGMDTTGYVVTLQTRFEGAKEAAYLATASAEPLVSQ 431
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL LEEA++LVE+SF Y S +
Sbjct: 432 FTPSYGMVLNLL-------------------QTHELEEAQELVERSFAQYTASQHLKPQV 472
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ + +E ++ S + I+ ++ LQ LK E+R L+ + E
Sbjct: 473 QAIADLNRELQLIDSLLEPVNIE----------LLQKYEKLQGRLKEERRLLKILQHQAE 522
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+ + L G + L +Y V +PAV + K
Sbjct: 523 EVQAKEISLGLLQANPGTILSLKGKYVP---VSSPLPAVLVAKVAGAGQF---------- 569
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
Y + LG DN WY T N +
Sbjct: 570 ----------------------PYLLCLGKDNKWYVVTT------------NDVVGLHGK 595
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM- 661
LP+ +L + E L E + F GS T + + +P S + + EV+
Sbjct: 596 LPQLPSNLGVKDIEFL-ESPPELTFKPGQSRSGSNVTDAIATMIPHASVPAVAPEVIAQL 654
Query: 662 -SFEYHDAVENYKE--QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
E A ++ Q + L K+ +R G + EE KR + +
Sbjct: 655 KQVEMLKAEVDHHPIWQWGNPSTLLKRQSRRMGIQ------------EEICKRQEMLQAK 702
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLR 777
L W+EF + ++ AL D+N PLGE AAAIRG+NELWL + +
Sbjct: 703 LAHH--------WQEFTDLIEILRRMGALQDLNPT---PLGEAAAAIRGDNELWLGLAIT 751
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+ L +L P LAA +LV+E + W N S + + V NV R +LQ
Sbjct: 752 SGALDELDPHHLAAAVCALVTETARPDSWTNYSLSNQAVEALTEVRNV----RRQLFQLQ 807
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 897
++ V +P L+ + G+VE WA G+ W ++ + LD+GD+ R+LRRT+DLL+QIP +P
Sbjct: 808 RRYQVTLPVWLEYELVGIVEQWALGVEWFDLCGNTNLDEGDIVRMLRRTVDLLSQIPHVP 867
Query: 898 DVDQRLQKNAVDASNVMDRPPISEL 922
+ + LQ+NA+ A ++DR P++E+
Sbjct: 868 HISRSLQRNAIRAIQLIDRFPVNEV 892
>gi|254423688|ref|ZP_05037406.1| DSHCT domain family [Synechococcus sp. PCC 7335]
gi|196191177|gb|EDX86141.1| DSHCT domain family [Synechococcus sp. PCC 7335]
Length = 886
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 303/922 (32%), Positives = 469/922 (50%), Gaps = 147/922 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ ++G V + L DV ++LDE HY++D RGTVWEE +IYCP E+Q++ LSA
Sbjct: 106 FRNMLYGTTIGEVGT--SLRDVQAVILDECHYMNDRQRGTVWEESVIYCPPEIQLVGLSA 163
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+ N +L WI ++HG T LI S RPVPL ++F+ + + PLL+ N+K S++
Sbjct: 164 TIENGGQLTDWINEVHGPTRLIYSDYRPVPLNFHFAVEKGIFPLLN------NQKTSIH- 216
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+K Y+ R+R +K A +V+
Sbjct: 217 -----PRLKNYRKPPRRQRGQKKKAGATLPGVVS-------------------------- 245
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L+++DMLPAI+FIF+R+GCD AVQ + NL+ E ++ + RF P+A+R
Sbjct: 246 --QLQAKDMLPAIYFIFSRKGCDKAVQAVASMNLVSAAEAELLKRRIDRFVERNPEAIRT 303
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +GVAAHHAG LP WKS +EELFQ GL+KVVFATETLAAGINMPART V++SLS
Sbjct: 304 NQLEPLYRGVAAHHAGILPAWKSLVEELFQAGLIKVVFATETLAAGINMPARTTVIASLS 363
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L ++E QM+GRAGRRG+D GHVV V++P+EGA+E L A +PLVSQ
Sbjct: 364 KRTDSGHRLLHASEFLQMSGRAGRRGMDVEGHVVTVESPFEGAKEAASLALAPPDPLVSQ 423
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +H + EEA++L+E+SFG Y+ + + K
Sbjct: 424 FTPSYGMVLNLLQ----VH---------------TAEEAQELIERSFGQYLATLHLAPQK 464
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ K++++ VL +++ + EAA E L+ L+ E+R L+++ E
Sbjct: 465 KAIAKLEQDIAVLQDQLA----------YIDEAALAEYEKLRGWLREEERLLKILQQQAE 514
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+ L+ + F L L+ K+ + V +PAV + K
Sbjct: 515 -ESIGTLEPVAISFAMAGT-VLSLKGKNIK-VATPLPAVLVSKVPGPGQF---------- 561
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR--IGFPNVALAQG 600
+ V LG++N WY T K + + G L
Sbjct: 562 ----------------------PFLVCLGANNRWYVATVKDVAALPERSAGTAGSRLRAA 599
Query: 601 DALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSL-SESDEVL 659
D L + L+ G+ +G+ + + + +P ++++ +++ EV
Sbjct: 600 DDL-TPPVDLIYSPGK---------------SRKGNEVSAAVAAKIPEITAIETQAPEV- 642
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
KEQ+ K A + +K+A+ + + VK + +K + R RL
Sbjct: 643 -------------KEQQEKAAAVAQKLAQNP-VAQLENPKAVVKQQKRLLKLEEERRDRL 688
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
K E W EF+ + V+ + L+ NT +G+ AAIRG+NELWL M L +
Sbjct: 689 QK-YENYTHHYWLEFVSLMQVLEDFECLEENTPT--EMGQLCAAIRGDNELWLGMALASG 745
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
L+P Q AA CA ++ E + W Y + V+ + L R + Q +
Sbjct: 746 EFDALEPQQFAAACAGILMENNRSDTWIR----YHATRPVLEALGGLRSLRRRIFQAQRR 801
Query: 840 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 899
++IP L+ +VE WA W+ + + +LD+GD+ RLLRRT+D L+QIP +P +
Sbjct: 802 QDIQIPVWLEEDLIALVEQWALETEWQVLCDNTSLDEGDVVRLLRRTLDFLSQIPHVPYL 861
Query: 900 DQRLQKNAVDASNVMDRPPISE 921
+ ++ NA A+ +++R P++E
Sbjct: 862 SESVRSNARQAAYLINRFPVNE 883
>gi|412992553|emb|CCO18533.1| putative DNA helicase [Bathycoccus prasinos]
Length = 1188
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 320/1013 (31%), Positives = 491/1013 (48%), Gaps = 158/1013 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
LR +++S + G + L DV V++LDEVHYL D RGTVWEE IIYCP +Q++CLSA
Sbjct: 240 LRNMLYSSAAGG-DMDKRLDDVGVVILDEVHYLGDAYRGTVWEETIIYCPSNIQLLCLSA 298
Query: 63 TVANADELAGWIGQIHG-------------------KTELITSSRRPVPLTWYFSTKT-- 101
T+ N D+L+GWI ++ + + + S+ RPVPL W++S K
Sbjct: 299 TIGNPDDLSGWIEEVRRNGADNERAEENENEQLKSVQCKTLVSNYRPVPLNWFYSMKPNR 358
Query: 102 ---ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 158
L LL+ +G MN +E+ P+ + G + ++R + S
Sbjct: 359 DWPGLGYLLNSRGTKMN------------AELYPFTEEGIQESSARYGGEQESYYNNYDN 406
Query: 159 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 218
+ N ++RR VP V + L S DMLPA+WFIF+R+GCD AV YL C
Sbjct: 407 NINSRRDNDQKSMRRRLVPHVETAVGQLISADMLPAVWFIFSRKGCDQAVDYL--CRDAG 464
Query: 219 EC-----EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
C E E+ + F DAVR+ I+ L GVA+HHAG LP WK +E LFQR
Sbjct: 465 ACLVSREEQLEITKEIDAFIASNRDAVRQEMIEPLKCGVASHHAGLLPAWKGLVEALFQR 524
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GLVKVVFATETLAAG+NMPAR V+S+LSKR +G LTSNE FQMAGRAGRRG D+ G
Sbjct: 525 GLVKVVFATETLAAGVNMPARCTVMSALSKRGDTGPRTLTSNEFFQMAGRAGRRGFDDVG 584
Query: 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393
+VV +Q+P++G E+ L+ E L SQF SYGMVLNLL G K
Sbjct: 585 YVVCLQSPFDGPEDAFSLVSGEPENLKSQFAISYGMVLNLLRGDK--------------- 629
Query: 394 AGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL-----TSEISDDAIDRKS 448
SL + R +VE+SFGNY+G L+ EL ++ + + L SEI D ID
Sbjct: 630 ---SLNQIRSIVEKSFGNYLGGKARLSQMRELNRLLDKLNALKAQESKSEIIQDGID--- 683
Query: 449 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK----DILKDFENG-HLPF 503
E+ + L+E L+ E+ L + E + +++ D L E G +
Sbjct: 684 -----ESEWNRFVKLEERLRVEQGLLELLESQSEETKVESMREDVWDALTLGEEGVKMIA 738
Query: 504 LCLQYKDSEGVEHSVPAVYLGKFD--SLDSSKLKNMA--------SINDSFALNRLAQSN 553
+ + ++ + SV G D SL K +++ ++ F ++ +A+ +
Sbjct: 739 VDVGWRVDLVGQSSVKGTTFGLLDDGSLVVEKEESVTEFFANEDVDVDGIFEIDYIAEED 798
Query: 554 GDDYDTQDVK--------------------------PS---YYVALGSDNTWYTF-TEKW 583
D+ D + V PS + LG+D WY F K
Sbjct: 799 PDE-DGEKVSRETIERRKLRGSLPVLVVSAQRPEEAPSPLGEFTGLGADGMWYRFDAHKI 857
Query: 584 IKTVYRIGFPNVALAQGDALP----RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLET 639
+ T Y + + + +P RE+ + + W + + L+ G+ +T
Sbjct: 858 VSTSY------IGASSNETMPFTEIRESCGNPPSESSIRWRRSSK-----LYRANGNAKT 906
Query: 640 WSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIV 699
+ + N+P + + E D + QR K+ ++ + ++ +
Sbjct: 907 SAAAANLPGTC------DAFSIFEEDADTASYLEAQRKKIEGIQIDLGELSNVGLLRREM 960
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL---------DIN 750
K K +L R+++L RI + +GW +F+R+ +++ AL D
Sbjct: 961 KLQKKRRAKSDKLSERTRKLEARIREYSAAGWDDFMRVVDILDHRNALVRVRKTSENDDE 1020
Query: 751 TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNS 810
I GE A RGENELW+ VL + + + LA VC ++ S+ + +
Sbjct: 1021 EIEILTFGEVCMAFRGENELWIGTVL-SALPETISVTSLAGVCGAMSSDANRAV-----N 1074
Query: 811 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMM 869
+ Y PS + ++ +LQ ++ P L + ++E WASG++W ++
Sbjct: 1075 AYYGPSEELDTILASFVPDLEDIADLQYASRIDNAPLSLSQDLAALLEQWASGVSWSQIK 1134
Query: 870 MDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
D +L +GD+AR+ +RT +LLAQIP+ P V ++L+K A +A +++RPPIS+L
Sbjct: 1135 TDTSLQEGDIARVFKRTAELLAQIPRAPYVSEQLKKTAKEAERIVNRPPISDL 1187
>gi|300864714|ref|ZP_07109568.1| DSH-like [Oscillatoria sp. PCC 6506]
gi|300337280|emb|CBN54716.1| DSH-like [Oscillatoria sp. PCC 6506]
Length = 899
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 312/932 (33%), Positives = 467/932 (50%), Gaps = 163/932 (17%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSA
Sbjct: 115 FRNMLYGTPIGEVGTS--LTGVEAVVLDECHYMNDRQRGTVWEESIIYCPAEVQLVALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L WIG++HG TELI S RPVPL ++F+ + L PLL+
Sbjct: 173 TVANSDQLTDWIGRVHGPTELIYSDFRPVPLQFHFANQKGLFPLLE-------------- 218
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
G+++ N+R +V Q + ++ +I VP + D
Sbjct: 219 -------------AGTKKVNAR---------LVPKKKQQKETRGNI------PVPNLPDI 250
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+R+GCD AV + + +L+ E E + + + F P+A R
Sbjct: 251 LSGLQQRDMLPAIYFIFSRKGCDRAVGEMGNLSLVTEKESASLRRIVDDFLERNPEARRA 310
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +GVAAHHAG LP WK +EELF GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 311 GQVEPLYQGVAAHHAGILPAWKGLVEELFGMGLIKVVFATETLAAGINMPARTTVISTLS 370
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QMAGRAGRRG+D G+VV VQTP+EGA+E L AG + L SQ
Sbjct: 371 KRTDRGHRLLNASEFLQMAGRAGRRGMDEVGYVVTVQTPFEGAKEAAYLATAGADALSSQ 430
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LEEA++LVE+SFG Y+ S + L +
Sbjct: 431 FTPSYGMVLNLL-------------------QTHTLEEAKELVERSFGQYI-STLHLQPQ 470
Query: 423 DELCKIQKETDVLTSEIS--DDAIDRKSRRLLS-EAAYKEMANLQEELKAEKRFRTELRR 479
Q E D+L E+ + +D + + S E LQ +K EKR L +
Sbjct: 471 ------QAEIDILKRELGAIEAQLDSSGKNIASLEKLLANYEKLQGRVKEEKRILKTLEQ 524
Query: 480 RMELKR---------FSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ E R F+ + +L + H+P ++PAV + K
Sbjct: 525 QAEEIRLKDMAVAVAFAVIGTVL-SLKGKHVP------TAKRPQAPALPAVLVAKIPGPG 577
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+ Y V LG DN WY + +Y
Sbjct: 578 QA--------------------------------PYLVCLGRDNRWYVVAISDVAGLY-A 604
Query: 591 GFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLS 650
P +++ +P E M++ L + C G+ +T + + +P +
Sbjct: 605 EIPRLSVVDSLGVPPE-MAMRLGQ-----------------CRLGNEDTAAIARLIPEMP 646
Query: 651 SLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIK 710
+ + E + Q+ ++A L++++ E+ +K +
Sbjct: 647 TPTPPPEAI--------------AQQQRIAALEQQL-ENHPLHEWGNPASLLKRQRRRGS 691
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
+K S R +++E+ W+EFL + ++ LD + LG+ AAIRG+NEL
Sbjct: 692 LVKEISDR-QQQLEKKRARYWEEFLNLIAILQSFGCLDGLMPTM--LGKACAAIRGDNEL 748
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH- 829
WL + L + +L P LAA CA LV+E + W Y S V+ ++ L
Sbjct: 749 WLGLSLMSGEFNELDPHHLAAACAGLVTEVSRPDSWTR----YTLSPEVLEALDNLQRGL 804
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
R ++Q +H V IP L+ + +VE WA G+ W +++ + +LD+GD+ R+LRRT+D
Sbjct: 805 RRRVFQVQHRHDVAIPIWLEREIITLVEQWALGVEWLDIVANTSLDEGDVVRILRRTLDF 864
Query: 890 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
L+Q+P +P + + L+ NA A ++DR P++E
Sbjct: 865 LSQVPHVPYISESLRSNAYRAMQLIDRFPVNE 896
>gi|440682616|ref|YP_007157411.1| DSH domain protein [Anabaena cylindrica PCC 7122]
gi|428679735|gb|AFZ58501.1| DSH domain protein [Anabaena cylindrica PCC 7122]
Length = 890
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 327/922 (35%), Positives = 480/922 (52%), Gaps = 151/922 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQIGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL +++ L PLL++ +N +L
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSNTKINPRLIKR- 230
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ KP K G R + P +I T
Sbjct: 231 ----GKKGKPEKGRGGR----------------------------------PEAPSIIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + D L++ E + + F PDA R
Sbjct: 253 LSQLEQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLNRNPDAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +GVAAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGVAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QM+GRAGRRG+D +G+VV VQTP+EGA+E L + +PLVSQ
Sbjct: 373 KRTDNGHRLLKASEFLQMSGRAGRRGMDLQGYVVTVQTPFEGAKEAAYLATSPADPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE AR+L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTLERARELIERSFGQYMATLHLRPEY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ +I+ E L +E++D ID +E A E L++ LK E+ L+ + +
Sbjct: 474 DEIGEIEAELAKLQAELAD--IDE------NELALYE--KLRQRLKVERHIFKTLQEQAQ 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L +L +G + L L K+ + A+ +GK
Sbjct: 524 ADRQEQLSMMLDFAISGTM--LSLNDKNMTAT-LPITAILVGK----------------- 563
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
A S G + SY+V LG DN WY T + +Y P V ++ D
Sbjct: 564 -------ATSPG--------QTSYFVCLGKDNRWYVATTADVVDLY-AELPKVEVSP-DI 606
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP L + +G+ C+ GS ET + + ++P + E ++M
Sbjct: 607 LP--PSELAIKRGQ---------------CVSGSEETLAIAQSIP------DPGEFMYMP 643
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTK 721
E + +++R+ A+ E ++ V T+ + L+A + +
Sbjct: 644 PEVAE----------QLSRVNAVQAQLENHPLHQSGNVATIFKRRARCVELEAELEEVQG 693
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNK 779
++EQ W+EFL + +++ + L+ I TQ LG+ AAAIRGENELWL +V+ +
Sbjct: 694 QVEQQSQRHWEEFLNLIHILQQFGGLENLIPTQ----LGQMAAAIRGENELWLGLVIASG 749
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
L +L P LAA A+LV+E + ++ ++ S V + + L R ++Q +
Sbjct: 750 ELDNLDPHHLAAAAAALVTETPR----PDSKVRFDLSNEVADALAKLRGIRRQLFQIQRR 805
Query: 840 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 899
+ V +P L+ + +VE WA G W E+ + LD+GD+ RLLRRT+DLL+QIP +P V
Sbjct: 806 YNVALPIWLEFELIAIVEQWALGKEWVELCANTTLDEGDVVRLLRRTLDLLSQIPHVPYV 865
Query: 900 DQRLQKNAVDASNVMDRPPISE 921
L++NA A ++DR P++E
Sbjct: 866 QDSLRRNAQRAMQLIDRFPVNE 887
>gi|427418494|ref|ZP_18908677.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
gi|425761207|gb|EKV02060.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
Length = 907
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 299/920 (32%), Positives = 453/920 (49%), Gaps = 146/920 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ ++G V + DV ++LDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 107 FRNMLYGTTMGEVGD--AVQDVQAVILDECHYMNDRQRGTVWEESIIYCPPEIQLVGLSA 164
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN D+L WIG+IHG ++LI S RPVPL +F T + PLL+ K ++ +L
Sbjct: 165 TVANGDQLTDWIGKIHGPSQLIYSDFRPVPLNMHFGTGKGIFPLLNSKKTALHDQL---- 220
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
K ++ R++ +K A N + +
Sbjct: 221 --------KKHRKPPRRQKGQKKKAMAAGNEFLVA------------------------- 247
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L+ +DMLPAI+FIF+R+GCD AVQ + +L++ E ++ + F P+A R
Sbjct: 248 --QLQQKDMLPAIFFIFSRKGCDKAVQSISSLSLVNPAETRALKQRIDEFLTANPEAARA 305
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +GVAAHHAG LP WK +EELFQ GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 306 GQVEPLYRGVAAHHAGLLPAWKGLVEELFQAGLIKVVFATETLAAGINMPARTTVISSLS 365
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L ++E QM+GRAGRRG+D GHVV V+TP+EGA E L A +PLVSQ
Sbjct: 366 KRTDSGHRLLHASEFLQMSGRAGRRGMDVEGHVVTVETPFEGAREAGYLALAKPDPLVSQ 425
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL SLEE R LVE+SFG Y+ + + +
Sbjct: 426 FTPSYGMVLNLL-------------------QTHSLEETRDLVERSFGQYLSTLHLTPQQ 466
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ +++ +++ + + E A L+E L+ E+R L + ++
Sbjct: 467 QAINDVEHNIELIREQLA----------AIGDEQIAEYAKLKEHLREERR----LLKILD 512
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSE-GVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
+ L L N + L K V + +PAV + K +
Sbjct: 513 QQATETLTGDLHTVINFAIAGTVLSLKGKHIPVANPIPAVLVTKLQGPN----------- 561
Query: 542 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 601
K Y V L DN W + + +Y + +A A
Sbjct: 562 ---------------------KVPYLVCLTGDNQWLMAAPRDVFALYE-KYERIA-AVDH 598
Query: 602 ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM 661
+P + +++ G C G T + + VP L DE+
Sbjct: 599 LIPPDALTMK----------------AGNTC-PGDETTAAVAQAVP--QELPTFDEL--- 636
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTK 721
KEQR ++ ++ ++ + ++ K +K ++++ L+A
Sbjct: 637 -------APEVKEQRDRMLSVEAQL-DSHPLNQFGKPKTLLK-KQQRLSTLEAELSDRQA 687
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
+ + W+EFL + ++ L+ N F G+ AAAIRGENELW+++ L +
Sbjct: 688 KYNKYAGRYWQEFLNLMAILENFGGLENNQPTNF--GKMAAAIRGENELWISLALGSGEF 745
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 841
L P Q AAVCA++V+E + W Y S V + L R + Q ++
Sbjct: 746 DHLPPHQFAAVCAAIVTEITRPDTWTQ----YRTSHAVTAALEGLRSTRRQIFQQQRRYQ 801
Query: 842 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 901
V +P L+ +VEAWA W E+ + +LD+GD+ R+LRRT+D+LAQIP +P +
Sbjct: 802 VTLPVSLEWNLIALVEAWALETEWNELCQNTSLDEGDVVRILRRTLDILAQIPHVPFLPS 861
Query: 902 RLQKNAVDASNVMDRPPISE 921
++ A A+++++R P++E
Sbjct: 862 TVKSTARQAAHLLNRFPVNE 881
>gi|113476965|ref|YP_723026.1| DSH-like [Trichodesmium erythraeum IMS101]
gi|110168013|gb|ABG52553.1| DSH-like [Trichodesmium erythraeum IMS101]
Length = 905
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 316/938 (33%), Positives = 467/938 (49%), Gaps = 169/938 (18%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 115 FRNMLYGTHIGEVGA--SLEKVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L WI ++HG TELI S RPVPL + FS L LL+ K +N +L
Sbjct: 173 TVANSDQLTDWILRVHGPTELIYSDFRPVPLKFNFSNSKGLFSLLNSNQKRINPQL---- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP SR+ + + P +
Sbjct: 229 --------KP---------KSRQPKTDKKDK--------------------KEEPALSTV 251
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQ---YLEDCNLLDECEMSEVELALKRFRILYPDA 239
L L+ RDMLPAI+FIF+RRGC AV L + L++ E ++++ +++F PD
Sbjct: 252 LSQLQERDMLPAIYFIFSRRGCARAVAEIAQLSNLTLVNPEEAAKLQKLVQKFLQRNPDL 311
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+ ++ L +G+AAHHAG LP+WK +EELFQ+GL+KVVFATETLAAGINMPART V+S
Sbjct: 312 GKSQQLEPLTRGIAAHHAGMLPVWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVIS 371
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
SLSKRT G L +E QMAGRAGRRG+D +G+VV VQT +EG +E L +G +PL
Sbjct: 372 SLSKRTDDGHRLLKPSEFLQMAGRAGRRGMDIQGYVVTVQTRFEGVKEAAYLATSGADPL 431
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
VSQFT SYGMVLNLL +L+EA+ LVE+SFG Y+ + +L
Sbjct: 432 VSQFTPSYGMVLNLL-------------------QTHTLQEAKDLVERSFGQYLSTLSLL 472
Query: 420 AAKDELCKIQKETDVLTSEIS----DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
+ E+ +KE L +++ +D I+ + +LL A+Y++ L+ ++K EKR
Sbjct: 473 PERKEIELKEKELKALENKLGIYEDNDWINLE--QLL--ASYEK---LRGKVKEEKRLLR 525
Query: 476 ELRRRMELKR---------FSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKF 526
L+R+ E R F+ L +L + H+P + +PAV + K
Sbjct: 526 ILQRQAEETRIREMSLSLSFAILGTVL-SLKGKHVP------TAKKSTAEPIPAVLVAKV 578
Query: 527 DSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKT 586
S SY + LG DN WY + T
Sbjct: 579 PGSGQS--------------------------------SYSLCLGKDNRWYIVGAMDVMT 606
Query: 587 VYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNV 646
+ + FP +A +P E S L G+ C +G + + +
Sbjct: 607 L-QADFPRLAAVDYMEVPEEMGSRL---GQ---------------CRKGDEISLVLAQQI 647
Query: 647 PVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE 706
P + + EVL Q K+A + + A KE+ +K
Sbjct: 648 PAVPLPVDPPEVL--------------AQMQKLAICEAE-AEAHPLKEWGNPRTLIK-GW 691
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP--LGETAAAI 764
+++ L+A + + +E W+EFL + ++ L + P +G+ AAI
Sbjct: 692 RRVEMLRAEIEDRQRELEDKLARHWQEFLHLIEILQYFGCL----HGVEPTEVGQACAAI 747
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RG+NELWL +VL + +L P LA CA LV+E + W YE S V +
Sbjct: 748 RGDNELWLGLVLMSGSFDELDPHHLATACAGLVTEITRPDSWTR----YELSVEVKEAMA 803
Query: 825 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
L R ++Q +H V +P L+ +VE WA G+ W E++ + +LD+GD+ R+LR
Sbjct: 804 SLRNLRHQLFQVQHRHQVALPVWLERDLIALVEQWALGVEWEELVNNASLDEGDVVRMLR 863
Query: 885 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
RT+D L+QIP +P + L++NA A ++DR P++E+
Sbjct: 864 RTLDFLSQIPHVPCLSDALRRNAHRAMQLIDRFPVNEV 901
>gi|434403322|ref|YP_007146207.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
gi|428257577|gb|AFZ23527.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
Length = 892
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 327/922 (35%), Positives = 477/922 (51%), Gaps = 147/922 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQVGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL ++F L PLL+E +N +LS
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNETKTKINARLS--- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+R+ +K G+ + + R + P +I T
Sbjct: 229 -----------------KRSGKK-------------GKFEHGRTG-----RPEAPGIIYT 253
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 254 LSQLEQRDMLPAIYFIFSRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLSRNPEAGRS 313
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 314 GQIAPLYRGIAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 373
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QM+GRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQ
Sbjct: 374 KRTDNGHRLLKASEFLQMSGRAGRRGMDLQGHVVTVQTPFEGAKEAAYLATSEADPLVSQ 433
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +L++ R+L+E+SFG Y+ + +
Sbjct: 434 FTPSYGMVLNLL-------------------QTHTLDQTRELIERSFGQYMATLHLRPDY 474
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+E+ +IQ E L +I+ A+D K A Y++ L++ LK E++ L+ + +
Sbjct: 475 EEIAEIQAELTQLQEQIA--AVDEKEL-----AVYEK---LRQRLKVERQILRTLQEQAQ 524
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASI 540
R L +L +G L L KD + + ++P AV + K S + S
Sbjct: 525 KDRQEQLVMMLDFAVSGTL----LSLKD-KNITATLPITAVLVAK------SPIAAGQS- 572
Query: 541 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG 600
Y V LG DN WY T + +Y P V +
Sbjct: 573 ------------------------PYLVCLGRDNRWYVATSVDVVDLY-AELPRVEVPP- 606
Query: 601 DALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLH 660
D LP L L +G+ + G+ ET + + +P + +E L
Sbjct: 607 DMLP--PSELPLKRGQ---------------SIRGNEETAAIAQCIP------DPEEFLP 643
Query: 661 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 720
S E Q ++V +++++ T E K + L+A + L
Sbjct: 644 TSPE-------VAAQLSRVTAVQEQL-ETHPLHEAGNAAAIFK-RRARCIELEAEIEELE 694
Query: 721 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 780
R+ Q W+EFL + ++ + LD V LG+ AAAIRGENELW+ +V +
Sbjct: 695 GRVGQQSQRHWEEFLSLIEILQQFGGLD--NLVPTTLGQIAAAIRGENELWIGLVFASGE 752
Query: 781 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 840
L +L P LAA A+LV+E + ++ YE S V + L R ++Q ++
Sbjct: 753 LDNLDPHHLAAAAAALVTETPR----PDSKVRYELSNEVAEALAKLRGIRRQMFQVQRRY 808
Query: 841 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD 900
V +P L+ + +VE WA G+ W E+ + LD+GD+ RLLRRT+DLL+QIP +P++
Sbjct: 809 NVALPIWLEFELIAIVEQWALGMEWIELCENTTLDEGDVVRLLRRTLDLLSQIPHVPNLP 868
Query: 901 QRLQKNAVDASNVMDRPPISEL 922
LQ+NA A ++DR P++E+
Sbjct: 869 DSLQRNAYRAMQLIDRFPVNEV 890
>gi|428219595|ref|YP_007104060.1| DSH domain-containing protein [Pseudanabaena sp. PCC 7367]
gi|427991377|gb|AFY71632.1| DSH domain protein [Pseudanabaena sp. PCC 7367]
Length = 906
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 314/914 (34%), Positives = 465/914 (50%), Gaps = 158/914 (17%)
Query: 15 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 74
V+ + L ++ +VLDE HY++D RGTVWEE IIYCP +Q++ LSAT+AN+ +L WI
Sbjct: 144 VNLKDALANLAAVVLDECHYMNDRQRGTVWEESIIYCPPSIQLVALSATIANSAQLTDWI 203
Query: 75 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 134
Q+HG T LI+S RPVPL ++F L PLLD+K + +N KL
Sbjct: 204 NQVHGPTALISSDYRPVPLQFHFCNNKGLAPLLDQKRQKLNPKLK--------------- 248
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
G R R S++ RR++ P + + L R MLPA
Sbjct: 249 --GDRNRRSQQFRGRG---------------------RRNE-PSLGFVVSQLAQRQMLPA 284
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254
I+FIF+RRGCD AV ++ L++ E + ++ + F PDA R ++ L KG+AA
Sbjct: 285 IYFIFSRRGCDLAVTEMDKVPLVNADEAARLKEQIDAFLSANPDAGRAGQVQALYKGIAA 344
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT +G L +
Sbjct: 345 HHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDNGHRLLNA 404
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+E QMAGRAGRRG+D G+VV VQT +EGA++ L A +PL+S FT SYGMVLNLL
Sbjct: 405 SEFLQMAGRAGRRGMDRVGYVVTVQTRFEGAKDAAFLATADADPLMSHFTPSYGMVLNLL 464
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 434
+LE+A++L+E+SF Y+ S+++LA ++++ KET +
Sbjct: 465 QT-------------------HTLEKAQELIERSFSRYL-SDIVLAPQEQVLA-DKETRI 503
Query: 435 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 494
E +D + K+ L++ L+ KR R L ++ E +R S L L
Sbjct: 504 AKLEQELAGVDI--------SLLKDYEKLRDRLREAKRLRKILIQQAEEQRLSELATYL- 554
Query: 495 DFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNG 554
P V G + SK MA++ +A+ G
Sbjct: 555 ------------------------PYVLSGTIARVKISKKVTMAAVI-------VAKVPG 583
Query: 555 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA------LPRETM 608
+ +Y+ L DN + + K + +G P +A+ DA +P E
Sbjct: 584 AG------QFPWYICLTEDNRFLVAS---YKDIVLVGEP---IAETDATLAAIEIPPE-- 629
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
L++ G+ L +G ++ + + +P L EVL A
Sbjct: 630 -LIVKPGQTL---------------KGDEKSLAIAHLIPNLEMPEYPPEVLQQQAAVL-A 672
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
+E ARL + A G + I ++ ++E + L+ + L +R +
Sbjct: 673 IE---------ARLNEHPANQYG--DVGSISKKLRKSDELNRELEFQRNVLNQRRRK--- 718
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W EF+ + ++ L+ N + G+ AAA+RG+NELWLA+ +R+ L +L P
Sbjct: 719 -QWDEFMALVEILRSFDYLE-NLKPTA-AGQAAAALRGDNELWLALAMRSGELDELDPHH 775
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LA VCA+LV+E + W N S TV + L + R +Q K V IP L
Sbjct: 776 LATVCAALVTENSRSDTWVNLGI----SPTVEEALTELHDIRRQLFRMQRKQMVAIPIWL 831
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
D G++E WA G+ W E+ +LD+GD+ R+ RRT+DLL+QIP +P + L+++A
Sbjct: 832 DYDLVGLIEQWALGMEWTELCSHTSLDEGDVVRIARRTLDLLSQIPHVPFLPNSLKQSAK 891
Query: 909 DASNVMDRPPISEL 922
A+ ++DR PISE+
Sbjct: 892 QAAQLIDRFPISEV 905
>gi|428206722|ref|YP_007091075.1| DSH domain-containing protein [Chroococcidiopsis thermalis PCC
7203]
gi|428008643|gb|AFY87206.1| DSH domain protein [Chroococcidiopsis thermalis PCC 7203]
Length = 889
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 308/920 (33%), Positives = 462/920 (50%), Gaps = 148/920 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP ++Q++ LSA
Sbjct: 114 FRNMLYGTPIGEVGT--SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPPDIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN+D+L WI ++HG TELI S RPVPL +YF + PLLD K +N +L
Sbjct: 172 TIANSDQLTDWICRVHGPTELIYSEFRPVPLEFYFGNPKGIFPLLDPKTGKINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+P K R++ R + P++IDT
Sbjct: 228 --------RPKKGSSDRKQGP-----------------------------RPETPKLIDT 250
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ HL SRDMLPAI+FIF+RRGCD AV+ L L++ E +++++ + F PDA R
Sbjct: 251 VGHLYSRDMLPAIYFIFSRRGCDKAVEELAGVTLVNLEEAAQLKIQIDEFLRRNPDAGRV 310
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 311 GQVEPLYRGIAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 370
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L +E QMAGRAGRRG+D GHVV +QTP+EGA+E L A +PL+SQ
Sbjct: 371 KRTDRGHRLLNPSEFLQMAGRAGRRGMDKLGHVVTLQTPFEGAKEAVYLATAKPDPLMSQ 430
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F SYGMVLNLL +H +L EA++L+E+SFG Y+ + +
Sbjct: 431 FAPSYGMVLNLLQ----IH---------------NLAEAKELIERSFGQYLATLYLKPQY 471
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
D + +++ L +++ DR L++ LK E++ L +
Sbjct: 472 DAIAEMEDRLADLQTQMQSVDEDR----------LNHYEKLRQRLKVERQLLKVLEEQAL 521
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L + +G L L L+ K + +PAV + K +
Sbjct: 522 EARIEQLSLTINFAMSGTL--LSLRGKHVQ-TSTPIPAVLVAKIPGSGQA---------- 568
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
Y++ LG DN WY I ++ F + + +
Sbjct: 569 ----------------------PYFICLGRDNRWYVAASSDIADLF-AEFARLDIPEHLM 605
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
P E + L G+ +G+ ET + + +P L + EVL
Sbjct: 606 PPVE---MPLKPGQ---------------ARKGNEETATIAAQIPDLPPWHAAPEVL--- 644
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
EQ+ +V +++++ +K + +I +L+ +
Sbjct: 645 -----------EQQHRVIAVQEQLT-AHPLHHLGNPASILK-RKTRIAQLQTEIEERQAE 691
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782
+E+ W+EFL + ++ ALD T LG+ AAA+RG+NELWL + L + L
Sbjct: 692 LERYAHRHWEEFLHLMEILQRFGALDDLTPT--NLGKVAAAVRGDNELWLGLALASGELD 749
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 842
+L P LAA A+LV+E + W Y S V + + R +LQ ++ V
Sbjct: 750 NLAPHHLAAAIAALVTETPRPDSWVR----YLLSEEVDIALASIRPIRRQLFQLQRRYNV 805
Query: 843 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
IP L+ ++E W+ G+ W ++ + +LD+GD+ RLLRRT+DLL+QIP +P + +
Sbjct: 806 TIPIWLEYDLVALIEQWSLGVEWTDLCANTSLDEGDVVRLLRRTLDLLSQIPHVPFLSES 865
Query: 903 LQKNAVDASNVMDRPPISEL 922
L++NA A +MDR P++E+
Sbjct: 866 LRRNAYRAIQLMDRFPVNEV 885
>gi|282897088|ref|ZP_06305090.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
gi|281197740|gb|EFA72634.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
Length = 932
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 316/922 (34%), Positives = 470/922 (50%), Gaps = 147/922 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L +V+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 156 FRNMLYGTPIGQIGV--SLTNVEAVVLDECHYMNDQQRGTVWEESIIYCPQEVQLVALSA 213
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N+D+L W+ ++HG T+LI S RPVPL ++F L PLL+E +N +L
Sbjct: 214 TVDNSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNESRTKINSRL---- 269
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+K K G R +G R + P ++ T
Sbjct: 270 -------IKRGKKGIGER----------------GYGN------------RPEPPTIVYT 294
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + D L++ E + + + F P+A R
Sbjct: 295 LSQLSQRDMLPAIFFIFSRRGCDKAVSEVSDLWLVNNEESQILRVQIDEFLTRNPEAGRS 354
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L KG+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 355 GQIAPLYKGIAAHHAGILPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 414
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QM+GRAGRRG+D +GHVV +QTP+EGA E L + +PLVSQ
Sbjct: 415 KRTDNGHRLLKASEFLQMSGRAGRRGMDRQGHVVTLQTPFEGAREAAYLATSPADPLVSQ 474
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE+A++L+E+SFG Y+ + +
Sbjct: 475 FTPSYGMVLNLL-------------------QTHTLEQAKELIERSFGQYMATLYLKPEY 515
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ +I+ E + E+S ID L + L++ LK E L+ ++
Sbjct: 516 DEIEEIKAELTKIEEELS--VIDENEITLYEK--------LKQILKVELHIFRTLQEQLR 565
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+R S L +L+ G L + L+ K++ +Y SK+
Sbjct: 566 EERESELYMMLEFAVKGTL--VSLRDKNTTATLPITAILY---------SKVP------- 607
Query: 543 SFALNRLAQSNGDDYDTQDVKP-SYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 601
D P SY + LG +N WY+ T I V+ V + +
Sbjct: 608 ------------------DTGPSSYLICLGKNNRWYSATSSDILEVH-AHISRVEVLESI 648
Query: 602 ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM 661
P E L L KG + G +T + +P ++ E L+M
Sbjct: 649 IPPIE---LGLKKG---------------YSWRGDAQTAEIADIIP------DATEFLYM 684
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTK 721
+ E + Q ++V ++ ++ + K + + + K LK+ + L K
Sbjct: 685 TPELAN-------QLSRVVSIQSQMENNPVHQSGK--IGHIFKQKAKFLELKSYLEGLEK 735
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
+++Q W++FL + ++ ALD V LG+ AA IRGENELWL + + + L
Sbjct: 736 QVKQNSEQHWEQFLNLIRILQHFDALD--NLVPTYLGQMAATIRGENELWLGLAIDSGEL 793
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 841
+L P LAA A+LV+E + ++ ++ S V + ++ L R ++Q ++
Sbjct: 794 DNLDPHHLAAAIAALVTETPR----PDSRVSFDLSDEVGSALSNLRNIRRKLFQIQHRYH 849
Query: 842 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 901
V +P L+ + +VE WA G W ++ LD+GD+ RLLRRT+DLL+QIP P V +
Sbjct: 850 VALPIWLEFELIAIVEQWALGTKWLQICAMTTLDEGDVVRLLRRTLDLLSQIPHAPFVSE 909
Query: 902 RLQKNAVDASNVMDRPPISELA 923
L+KNA A ++DR P++E+
Sbjct: 910 SLRKNAGRAMQLIDRFPVNEVV 931
>gi|298492674|ref|YP_003722851.1| DSH domain-containing protein ['Nostoc azollae' 0708]
gi|298234592|gb|ADI65728.1| DSH domain protein ['Nostoc azollae' 0708]
Length = 890
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 318/924 (34%), Positives = 468/924 (50%), Gaps = 155/924 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L DV+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGQIGI--SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPHEVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ ++HG T+LI S RPVPL + F L PLL+E +N +L
Sbjct: 172 TVANSDQLTDWLNRVHGPTDLIYSDFRPVPLEFNFCNPKGLFPLLNESKTKINPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ + R + +I T
Sbjct: 228 -----------------------------------IKRGKKGPGEKGKGGRPEALSIIYT 252
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L RDMLPAI+FIF+RRGCD AV + D L++ E + + F P+A R
Sbjct: 253 ISQLEQRDMLPAIFFIFSRRGCDKAVAEVGDLWLVNNDESQILRRQIDEFLARNPEAGRS 312
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +GVAAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 313 GQIAPLYRGVAAHHAGILPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 372
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QM+GRAGRRG+D +G+VV +QTP+EGA+E L + +PLVSQ
Sbjct: 373 KRTDNGHRLLKASEFLQMSGRAGRRGMDLQGYVVTLQTPFEGAKEAAYLATSPADPLVSQ 432
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE+AR+L+E+SFG Y+ + +
Sbjct: 433 FTPSYGMVLNLL-------------------QTHTLEQARELIERSFGQYMATLYLKPEY 473
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ +I+ E + +E + AID +E A E L++ LK E+ L+ + +
Sbjct: 474 DEMGEIKAELAKIQAEFA--AIDE------NELALYE--KLRQRLKVERHILKTLQEQAQ 523
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
R L +L +G L L KD + A++
Sbjct: 524 TDRQEQLSMMLDFAVSGTL----LSLKDKSMI-----------------------ATLPI 556
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
+ L A G + SY+V LG DN WY T + +Y P V ++ D
Sbjct: 557 TAVLVEKAPDVG--------QASYFVCLGQDNRWYVATVADVVDLY-AELPRVEVSH-DI 606
Query: 603 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 662
LP L L +G+ C+ G+ ET + + ++P + E ++M
Sbjct: 607 LP--PAELALKRGQ---------------CVCGNQETAAIAQSIP------DPGEFMYMP 643
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEG-----FKEYKKIVDTVKFTEEKIKRLKARSK 717
E VE A+L+ G FK+ + V+ EE ++++ +S+
Sbjct: 644 PE---VVEQLARFNAVQAQLENHPLHQSGNIAKIFKDRARCVELEAELEELQEQVEQQSQ 700
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 777
R W++FL + ++ + LD V LG+ AAAIRGENELWL + +
Sbjct: 701 R-----------HWEQFLNLIQILQQFGGLD--NLVPTTLGQMAAAIRGENELWLGLAIA 747
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+ L L P LAA A+LV+E + ++ ++ S+ V + + L R ++Q
Sbjct: 748 SGELDSLDPHHLAAAAAALVTETPR----PDSKVHFDLSSEVADALAKLRGIRRQLFQIQ 803
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 897
++ V +P L+ + ++E WA G+ W ++ + LD+GD+ RLLRRT+DLL+QIP +P
Sbjct: 804 RRYNVALPIWLEFELIAIIEQWALGMDWVQLCANTTLDEGDVVRLLRRTLDLLSQIPHVP 863
Query: 898 DVDQRLQKNAVDASNVMDRPPISE 921
V L+KNA A ++DR P++E
Sbjct: 864 LVPDSLRKNAQRAMQLIDRFPVNE 887
>gi|443311900|ref|ZP_21041522.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
gi|442777975|gb|ELR88246.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
Length = 893
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 317/926 (34%), Positives = 461/926 (49%), Gaps = 152/926 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + + V+ +VLDE HY++D RGTVWEE IIYCP+E+Q++ LSA
Sbjct: 114 FRNMLYGTPIGEVGT--SMQGVEAVVLDECHYMNDRQRGTVWEESIIYCPREIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L WI +HG T+LI S RPVPL + F L PLL+ G +N +L
Sbjct: 172 TVANSDQLTDWINTVHGPTQLIYSDFRPVPLEFKFCNVKGLFPLLE--GGKINPRL---- 225
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R R D Q +K++ R + P +I
Sbjct: 226 ------------------RPKRGSIDA------------QKAKDARRNGARPEAPSIIYL 255
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L SRDMLPAI+FIF+RRGCD AV+ L L++ E ++++ + F PDA R
Sbjct: 256 LNQLSSRDMLPAIYFIFSRRGCDKAVEDLGTLTLVNPSEAAQLKWQIDEFLQRNPDAGRI 315
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 316 GQVQPLYRGIAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLS 375
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L +E QMAGRAGRRG+D RG+VV QTP+EGA+E L A +PLVSQ
Sbjct: 376 KRTDRGHRLLNGSEFLQMAGRAGRRGMDKRGYVVTAQTPFEGAKEAAYLATAKADPLVSQ 435
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL +LE+A++L+E+SFG Y+ +N+ L
Sbjct: 436 FTPTYGMVLNLL-------------------QTHTLEQAKELIERSFGQYI-ANLYL--- 472
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
K Q E L ++A +QE+L + +
Sbjct: 473 ----KPQYEAIALVQ--------------------AQLAQVQEQLASVD--------PAQ 500
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
L+ + L+ LK E L L Q D VE + +L S K KN+A+
Sbjct: 501 LQNYEKLRQRLK-VETQLLKTLVEQATDDR-VEQLSLTISFAMTGTLLSLKGKNVATSVP 558
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 602
A+ +A++ G + Y V LG++N WY T + ++ P + + Q D
Sbjct: 559 LTAV-LVAKTPGAG------QAPYLVCLGANNRWYVVTTSDVVDLH-AELPRLEI-QSDL 609
Query: 603 LPRETMSLLLD---KGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
LP M + +G + +AD + + E + V +S+ E+
Sbjct: 610 LPPVEMPIKPGQSRRGNQESQLIADLIPNSQAIIHTAPEVLAQQQRVQAVSAQIEA---- 665
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H E + +K +R K ++ +IA +
Sbjct: 666 HPLHELGNPATLFK-RRNKAMEIEAEIATRQA---------------------------- 696
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLR 777
+E+ W+EFL + ++ L Q + P LG+ AAAIRG+NELW+ + L
Sbjct: 697 --ELEKTSQRHWEEFLHLIEILQRFGCL----QDLEPTDLGQVAAAIRGDNELWIGLALA 750
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+ +L P LAA A++V+E + W Y V + L R + +LQ
Sbjct: 751 SGEFDELDPQCLAAAIAAIVTETPRPDTWVR----YTLPIPVEEALAGLRSTRRNLFQLQ 806
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 897
++ + +P L+ ++E WA G+ W E+ +LD+GD+ RLLRRT+DLL+QIP +P
Sbjct: 807 RRYNITLPIWLEYDLVALLEQWALGVDWVELCSHTSLDEGDVVRLLRRTLDLLSQIPYVP 866
Query: 898 DVDQRLQKNAVDASNVMDRPPISELA 923
+ LQ+NA A ++DR P++E A
Sbjct: 867 HLPTSLQRNAYRAVQLIDRFPVNETA 892
>gi|282899895|ref|ZP_06307856.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195165|gb|EFA70101.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 932
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 312/926 (33%), Positives = 473/926 (51%), Gaps = 153/926 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + L +V+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSA
Sbjct: 156 FRNMLYGTPIGQIGV--SLTNVEAVVLDECHYMNDQQRGTVWEESIIYCPQEVQLVALSA 213
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV N+D+L W+ ++HG T+LI S RPVPL ++F L PLL+E +N +L
Sbjct: 214 TVDNSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNENKTKINSRL---- 269
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+K K G R +G R + P ++ T
Sbjct: 270 -------IKRGKKGIGER----------------GYGN------------RPEPPTIVYT 294
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L RDMLPAI+FIF+RRGCD AV + D L++ E + + + F P+A R
Sbjct: 295 LSQLSERDMLPAIFFIFSRRGCDKAVSEVSDLWLVNNEESQILRVQIDEFLTRNPEAGRS 354
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L KG+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 355 GQIAPLYKGIAAHHAGILPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLS 414
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT +G L ++E QM+GRAGRRG+D +GHVV +QTP+EGA E L + +PLVSQ
Sbjct: 415 KRTDNGHRLLKASEFLQMSGRAGRRGMDKQGHVVTLQTPFEGAREAAYLATSPADPLVSQ 474
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LE+A++L+E+SFG Y+ + +
Sbjct: 475 FTPSYGMVLNLL-------------------QTHTLEQAKELIERSFGQYMATLYLKPEY 515
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
DE+ +I+ E + E+S AID L E+LK ++E
Sbjct: 516 DEIEEIKAELAKIEEELS--AIDENE------------ITLYEKLKQ--------ILKVE 553
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
L F L++ L++ L ++ L++ +V L D ++ L A +
Sbjct: 554 LHIFRTLQEQLREERESEL-YMMLEF--------AVKGTVLSLRDKNTTATLPMTAIL-- 602
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNVALA 598
+++ ++ S+ + LG +N WY+ T + V+ R+ P +
Sbjct: 603 ---YSKVPETGPS---------SFIICLGKNNRWYSATNSDVIEVHAHISRVEVPESIIP 650
Query: 599 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEV 658
+ L L KG + G +T + +P ++ E
Sbjct: 651 --------PIELGLKKG---------------YSWRGDAQTAEIADLIP------DTTEF 681
Query: 659 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
L+M+ E + Q +V ++ ++ + + KI K E + LK+ +
Sbjct: 682 LYMTPELAN-------QLNRVVSIQSQMEKN-SVHQSGKIGHIFKQKAEFVG-LKSYLEG 732
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L K++++ W++FL + ++ ALD LG+ A+ IRGENELWL + + +
Sbjct: 733 LEKKVKRNSEEHWEQFLNLIRILQHFDALD--NLAPTHLGQMASTIRGENELWLGLAIDS 790
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
L +L P LAA A+LV+E + ++ + S V + ++ L R ++Q
Sbjct: 791 GELDNLDPHHLAAAVAALVTETPR----PDSRVSFNLSNEVGSALSKLRNIRRKLFQIQH 846
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898
++ V +P L+ + +VE WA G W ++ LD+GD+ RLLRRT+DLL+QIP P
Sbjct: 847 RYHVALPIWLEFELIAIVEQWALGTKWLQLCAMTTLDEGDVVRLLRRTLDLLSQIPHAPF 906
Query: 899 VDQRLQKNAVDASNVMDRPPISELAG 924
V + L+KNA A ++DR P++E+AG
Sbjct: 907 VSESLRKNAGRAMQLIDRFPVNEVAG 932
>gi|254525983|ref|ZP_05138035.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
gi|221537407|gb|EEE39860.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
Length = 908
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 295/912 (32%), Positives = 466/912 (51%), Gaps = 157/912 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPSRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLINSDKRPVPLDFIFCSIKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q + + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKIRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD A++ ++D L+ E S + L + +A+++ + + L +G+A+HHAG
Sbjct: 266 RRGCDKAIENIKDLTLVSYSEASMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKET 432
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 -----------------TLEKSKELIKRSFGSFLYLGESSGENIILEKLDKDLIELKK-- 484
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
+TS +S D AY+++ N LK E+R L ++ K + +
Sbjct: 485 --ITSNVSWKDFD----------AYEKLRN---RLKEERRLLKILEKQSAEKLSEEITNA 529
Query: 493 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNRLA 550
L E+G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 530 LPYIEDGSL----ISIKAPQMKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL---- 579
Query: 551 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 610
+KPSY V++ +D +V G +P+ S
Sbjct: 580 -----------IKPSYIVSIFND-------------------LHVIDVSGLEVPKMYFSG 609
Query: 611 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 670
+ +G+ + + AD F + L+T + L VL+ + + + + V
Sbjct: 610 EVFRGDDISQCYADRIFE--VSKKNDLQTPQYDLTKEVLAQQQQINNL-------EETVT 660
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
++ R ++ K+Y+K I+D E++I K K +E E
Sbjct: 661 DHPAHR---------FGDSKKLKKYRKRIIDV----EQEINIRK-------KLLEDKENH 700
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +L
Sbjct: 701 NWRTFTDLIQILNHFGCL--NDLELTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPEL 758
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L+
Sbjct: 759 AAIIQAICVDVRRPNLWCN----FKPSVKVIDVFNELDGLRKLVSFQQNKFHIEIPIYLE 814
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A
Sbjct: 815 TELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKL 874
Query: 910 ASNVMDRPPISE 921
A ++R P+SE
Sbjct: 875 ALKAINRFPVSE 886
>gi|126696995|ref|YP_001091881.1| DNA helicase [Prochlorococcus marinus str. MIT 9301]
gi|126544038|gb|ABO18280.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9301]
Length = 908
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 292/911 (32%), Positives = 464/911 (50%), Gaps = 155/911 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPFRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLINSDKRPVPLDFIFCSIKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q + + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKMRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG
Sbjct: 266 RRGCDKAIENIKDLTLVSYSEANMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKET 432
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 -----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK-- 484
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
+TS +S D AY+++ N LK E+R L R+ K + +
Sbjct: 485 --ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILERQAAEKLSEEITNA 529
Query: 493 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNRLA 550
L ++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 530 LPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL---- 579
Query: 551 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 610
+KPSY V++ +D + + +Y G + +GD + +
Sbjct: 580 -----------IKPSYIVSIFNDLDAIDVSGLEMPKMYFSG----EVFRGDDMSQYYADR 624
Query: 611 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 670
+L+ + + L+T + L + VL+ + + + + V
Sbjct: 625 ILEVSKKI-----------------DLQTPQYDLTMEVLAQQQQINNL-------EETVT 660
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
++ R +R KK K+I+D E++I K K +E E
Sbjct: 661 DHPAHRFGDSRKLKKYR--------KRIIDV----EQEINMRK-------KLLEDKENHN 701
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P LA
Sbjct: 702 WRTFTDLIKILNHFGCL--NNLELTEVGQTVGAIRSENELWIGLVLFSGYLDDLDPPDLA 759
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
A+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L++
Sbjct: 760 AIIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLVASQQNKFHIEIPIYLET 815
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 816 ELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLA 875
Query: 911 SNVMDRPPISE 921
++R P+SE
Sbjct: 876 LKAINRFPVSE 886
>gi|91070166|gb|ABE11087.1| putative DNA helicase [uncultured Prochlorococcus marinus clone
HF10-11D6]
Length = 908
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 292/911 (32%), Positives = 464/911 (50%), Gaps = 155/911 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLINSDKRPVPLDFMFCSVKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q + + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKIRGKVGRIMQPKSPSIGFVISKLTERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG
Sbjct: 266 RRGCDKAIENIKDLTLVSYSEANMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART ++SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTIISSLSKRTEDGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDTQGYVVTLQTRFEGAKEASTLAISKPNSLESQFTPSYGMVLNLLQSY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKET 432
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 -----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK-- 484
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
+TS +S D AY+++ N LK E+R L ++ K + +
Sbjct: 485 --ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILEKQAAEKLSEEITNA 529
Query: 493 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLA 550
L ++G L + K + VP + K +S K+K++ ++++ F L
Sbjct: 530 LPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTVDNLFIL---- 579
Query: 551 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 610
+KPSY V++ +D F G LP+ S
Sbjct: 580 -----------IKPSYIVSIFNDLDAIDFL-------------------GLELPKMYFSG 609
Query: 611 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 670
+ +G+ + + AD + L+T + L+ VL+ + + + + +
Sbjct: 610 EVFRGDDMSQCYADRILE--VSKKNDLQTPQYDLSKEVLAQQQQINNL-------EETIN 660
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
++ R +R KK K+IVD E++I K K +E E
Sbjct: 661 DHPAHRFGDSRKLKKYR--------KRIVD----VEQEIYMRK-------KLLEDKENHN 701
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +LA
Sbjct: 702 WRTFTDLIKILNHFGCL--NDLELTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPELA 759
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
A+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L++
Sbjct: 760 AIIQAICVDIRRPNLWCN----FKPSLKVIDVFNELDGLRKLVASQQNKFHIEIPIYLET 815
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 816 ELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLA 875
Query: 911 SNVMDRPPISE 921
++R P+SE
Sbjct: 876 LKAINRFPVSE 886
>gi|390439559|ref|ZP_10227950.1| putative helicase [Microcystis sp. T1-4]
gi|389837048|emb|CCI32074.1| putative helicase [Microcystis sp. T1-4]
Length = 975
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 317/1000 (31%), Positives = 467/1000 (46%), Gaps = 234/1000 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGQVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLPQSGDNKQTSSCELINSDFRPVPLRFYFVNKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL +P GS RR +
Sbjct: 245 SKVNPKL------------RPKAPRGSSRR-----------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLQQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
A+ +L +++ LT+E++ +D + + E + L+E+L+ E+R
Sbjct: 545 -------ARLKLSPERQQITALTTELAK--LDMELAGIEREQVFS-YEKLREKLREEERL 594
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 533
L + E ++ + L + G + L L+ K + V VPA+++ + +
Sbjct: 595 YKILASQAEAQKRQEIHLKLPNIPVGTI--LHLKGKHIK-VPVPVPAIFVNTLHG--AGQ 649
Query: 534 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 593
++ + V LGSDN WY I + R GF
Sbjct: 650 VRTL------------------------------VCLGSDNRWYLAAYADISEIDR-GF- 677
Query: 594 NVALAQ-GDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNV 646
+A A+ G+ +P ++ L KGE + +AD + G+ V
Sbjct: 678 -LAPAELGELIPPSLEAVSLGGWRKGEENTQAIADLIRQQVQGI-------------PPV 723
Query: 647 PVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE 706
L + ++ E+++ H ++R RL K Y + + K +
Sbjct: 724 AELETQAQRVEIINSQIAAHPL-----QKRKNPGRLMKLY--------YDRELARDKLHK 770
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
+IK K +S++ W+EFL + ++ E +ALD + PLGE AA IRG
Sbjct: 771 TQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALD--GYLPTPLGEAAATIRG 819
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
ENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 820 ENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQG 875
Query: 827 DEHRSSFLEL-------QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 879
+E+ E+ Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL
Sbjct: 876 EENSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDL 935
Query: 880 ARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 936 VRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|157414068|ref|YP_001484934.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
gi|157388643|gb|ABV51348.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
Length = 908
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 291/912 (31%), Positives = 467/912 (51%), Gaps = 157/912 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLINSDKRPVPLDFIFCSVKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q + + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKMRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RRGCD A++ ++D L+ E + + L + +A+++ + L +G+A+HHAG
Sbjct: 266 RRGCDKAIENIKDLTLVSYSEANMISKKLDVYLKNNQEAIKDKFQCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKET 432
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 -----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK-- 484
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
+TS +S D AY+++ N LK E+R L ++ E K + +
Sbjct: 485 --ITSNVSWQDFD----------AYEKLKN---RLKEERRLLKILEKQAEEKLSEEITNA 529
Query: 493 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLA 550
L ++G L + K + VP + K +S K+K++ ++++ F L
Sbjct: 530 LPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTVDNLFIL---- 579
Query: 551 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 610
+KPSY V++ +D + + +G +P+ S
Sbjct: 580 -----------IKPSYIVSIFND----------LDAIDVLGL---------EVPKMYFSG 609
Query: 611 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 670
+ +G+ + + AD + L+T + L + VL+ + + + + V
Sbjct: 610 EVFRGDDMSQCYADRILE--VSKKNDLQTPQYDLTMEVLAQQQQINNL-------EETVN 660
Query: 671 NYKEQRTKVARLKKKIARTEGFKEY-KKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
++ R ++ K+Y K+IVD E++I K K +E E
Sbjct: 661 DHPAHR---------FGDSKKLKKYRKRIVD----VEQEIYMRK-------KLLEDKENH 700
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ F + +++ L + + +G+T AIR ENELW+ +VL + L DL P +L
Sbjct: 701 NWRTFTDLIKILNHFGCL--SDLELTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPEL 758
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L+
Sbjct: 759 AAIIQAICVDIRRPNLWCN----FKPSIKVIDVFNELDGLRKLVASQQNKFHIEIPIYLE 814
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A
Sbjct: 815 TELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKL 874
Query: 910 ASNVMDRPPISE 921
A ++R P+SE
Sbjct: 875 ALKAINRFPVSE 886
>gi|218437327|ref|YP_002375656.1| DSH domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170055|gb|ACK68788.1| DSH domain protein [Cyanothece sp. PCC 7424]
Length = 1003
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 322/1031 (31%), Positives = 458/1031 (44%), Gaps = 262/1031 (25%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 121 FRNMLYETPIGEVGT--SLEDVETVVLDECHYISDSGRGTVWEESIIYCPPSIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N +EL WI Q+ T EL+ S RPVPL++YFSTK L PLL+
Sbjct: 179 TIGNPEELTDWINQVRMSTRNRQFGSQSISTCELVNSDFRPVPLSFYFSTKQGLFPLLN- 237
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
N+K ++N S + P K ++R
Sbjct: 238 -----NQKTAIN------SRLLPKKTNKKKQR---------------------------- 258
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------- 216
++R P +++ + L+S MLPAI+ IF+RRGCD AVQ L NL
Sbjct: 259 -VKREDCPTILEIVEQLQSHQMLPAIYIIFSRRGCDQAVQSLGSINLVNSAEEKELCLRL 317
Query: 217 ----LDECEMSEVELALK----------------------------RFRILYPDA----- 239
L E +V L+ F YP +
Sbjct: 318 LAFFLTELSYEQVSQVLRDLAQMNPQLHDHLYSFLANNPNGAEQLVEFFGAYPQSKIQLF 377
Query: 240 ---------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+R ++ L +G+AAHHAG LP WK +E+LF+ GL+KVVFAT TL+AGIN
Sbjct: 378 QHIATQSKFIRLDHLEPLTRGIAAHHAGILPAWKELVEQLFELGLIKVVFATSTLSAGIN 437
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E
Sbjct: 438 MPARTTVISALSKRTDEGHSMLTPSEFLQIAGRAGRRGMDEVGHVVTVQTPFEGAKEAAY 497
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L A EPL S FT SYGMVLNLL SLE+A+ L+E SF
Sbjct: 498 LGTAQPEPLKSCFTPSYGMVLNLL-------------------QKHSLEQAKDLLECSFA 538
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
Y+ + K + + E L E++ +SEA L E LK E
Sbjct: 539 EYLARLKLAPEKQAIVDLTTEITKLDIELAG----------ISEAQINSYKKLNERLKHE 588
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
KR L+ + + + + L+ + LG L
Sbjct: 589 KRLLKILKHQAQTTKKQEIASQLEQLQ-------------------------LGNIVHLK 623
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F + L S K + V LG DN WY + V
Sbjct: 624 GKHIKVSQPVKAMF-VTALPGSG---------KSPFLVCLGEDNRWYIAANADVLDV--- 670
Query: 591 GFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLS 650
NV +++P E +S E+ L + G W +G +T S +
Sbjct: 671 ---NV-----ESIPAEEIS------ELSLPNLEKVQLGP-W-RKGDEQTALMSQKISRYG 714
Query: 651 -SLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKK---IVDTVKFTE 706
L E+ EV+ EQ+ +V L+ K+ +EYK +V+ + +
Sbjct: 715 EELLEAPEVI--------------EQQQQVDILEAKL-NNHPLQEYKNPGSLVEKYHYRQ 759
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
L A + +R + + W+EFL + ++ E AL+ T LGE AA IRG
Sbjct: 760 HLQDELHAIQIKY-QRHQSRKSYYWEEFLNLIEILQEFNALEGYTPTA--LGEAAATIRG 816
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-- 824
+NELWL +V + L L+P LAA ++L++E ++ + S Y PS VIN+
Sbjct: 817 DNELWLGLVFMSGELDSLEPPHLAAAVSALITENLR----PDTVSYYPPSLEVINLFQHQ 872
Query: 825 ------------------------------------VLDEHRSSFLELQEKHGVEIPCCL 848
L E R ++ Q K + IP L
Sbjct: 873 PQGDLCLETLIFRSHLIEKAKWLWFFDQLYRMGTAVSLQEIRRQLIQSQYKRMITIPVWL 932
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G W+E+ +LD+GD+ RLLRRT+D+L QIP +P + + L++NA
Sbjct: 933 EDELMGLVEAWARGTEWQELCEQTSLDEGDIVRLLRRTVDVLWQIPYIPRISEMLKQNAR 992
Query: 909 DASNVMDRPPI 919
+A M R P+
Sbjct: 993 EAIRAMKRFPV 1003
>gi|123969201|ref|YP_001010059.1| DNA helicase [Prochlorococcus marinus str. AS9601]
gi|123199311|gb|ABM70952.1| putative DNA helicase [Prochlorococcus marinus str. AS9601]
Length = 908
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 295/914 (32%), Positives = 466/914 (50%), Gaps = 161/914 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
T LI S +RPVPL + F + L PLL+ K G H N K
Sbjct: 181 TVLINSDKRPVPLDFIFCSVKGLHPLLNNKSNGIHPNCK--------------------- 219
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ + Q + + I + + P + + L R+MLPAI+FI
Sbjct: 220 ----------------IWRAPKGQKIRGKVGRIMQPKSPSISFVISKLAERNMLPAIYFI 263
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHA 257
F+RRGCD A++ ++D L+ E S + L+ + +A+++ + + L +G+A+HHA
Sbjct: 264 FSRRGCDKAIENIKDLTLVSYSEASMISQKLEFYLKNNQEAIKDKSQCEALKRGIASHHA 323
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E
Sbjct: 324 GLLPAWKELVEELFQQGLLKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEF 383
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QM+GRAGRRG D +G+VV +QT +EGA+E L + L S+FT SYGMVLNLL
Sbjct: 384 LQMSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNALESKFTPSYGMVLNLLQSY 443
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQK 430
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 -------------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK 484
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
+TS +S D AY+++ N LK E+R L ++ K +
Sbjct: 485 ----ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILEKQSAEKLSEEIT 527
Query: 491 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNR 548
+ L ++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 528 NALPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL-- 579
Query: 549 LAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608
+KPSY V++ +D +V G +P+
Sbjct: 580 -------------IKPSYIVSIFND-------------------LDVIDVLGLEVPKMYF 607
Query: 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 668
S + +G+ + + AD + L+T + L VL+ + + + +
Sbjct: 608 SGEVFRGDDMSQCYADQILE--VSKKNDLQTPQYDLTTEVLAQKQQINNL-------EET 658
Query: 669 VENYKEQRTKVARLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
V ++ R ++ K+Y+K I+D EE+I K K +E E
Sbjct: 659 VTDHPAHR---------FGDSKKLKKYRKRIIDV----EEEINIRK-------KLLEDKE 698
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P
Sbjct: 699 NHNWRTFTDLIKILNHFGCL--NDLDLTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPP 756
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
+LAA+ ++ + + LW N ++PS VI+V N LD R Q K +EIP
Sbjct: 757 ELAAIIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLVSFQQNKFHIEIPIY 812
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A
Sbjct: 813 LETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKA 872
Query: 908 VDASNVMDRPPISE 921
A ++R P+SE
Sbjct: 873 KLALKAINRFPVSE 886
>gi|307150235|ref|YP_003885619.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7822]
gi|306980463|gb|ADN12344.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
Length = 1004
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 321/1031 (31%), Positives = 465/1031 (45%), Gaps = 261/1031 (25%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 121 FRNMLYETPIGEVGT--SLENVETVVLDECHYISDSGRGTVWEESIIYCPPTIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGK-------------TELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N +EL WI ++ K ELI S RPVPL++YFSTK L PLL+
Sbjct: 179 TIGNPEELTDWINKVRQKRENKQFLEQKISTCELINSDFRPVPLSFYFSTKQGLFPLLNS 238
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
K +N +L P K+ +RR
Sbjct: 239 KNTAINPRLL------------PKKNQKKQRR---------------------------- 258
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
IRR + P +++ + L+ MLPAI+ IF+RRGCD A+Q L NL++ E E+ L
Sbjct: 259 -IRREECPTILEIVEQLQFGQMLPAIYVIFSRRGCDQAIQSLGSLNLVNREEEKELCWRL 317
Query: 230 KRFRI------------------------LY------PDAVRE--------PAIKG---- 247
F + +Y PDA + P IK
Sbjct: 318 LVFFLAENASLQEQLLNYFAKNNPDLRDKIYSFLANNPDATEQLLEILQTQPEIKSQLFQ 377
Query: 248 ----------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
L +G+AAHHAG LP WK +E+LF+ GL+KVVFAT TL+AGINM
Sbjct: 378 YLASESKFIRLDHLEPLTRGIAAHHAGILPAWKELVEKLFELGLIKVVFATATLSAGINM 437
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 438 PARTTVISALSKRTDEGHSMLTPSEFLQIAGRAGRRGMDQLGHVVTVQTPFEGAKEAAYL 497
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
A EPL S FT SYGMVLNLL SLE+A+ L+E SF
Sbjct: 498 ATAQPEPLKSCFTPSYGMVLNLL-------------------QKHSLEQAKDLLECSFAE 538
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEK 471
Y+ + K + ++ E L E++ +SE + E L+ EK
Sbjct: 539 YLARLKLAPEKQAIIELTTELTKLNIELAG----------ISEGQINSYKKINETLREEK 588
Query: 472 RFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS 531
R LR + + R + + L+ + G + L ++ V V AV +G
Sbjct: 589 RLLKILRHQAQTNRKNEIVTRLEQLQAGKIVHLKGKHIK---VSEPVTAVLIGSIP---- 641
Query: 532 SKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIG 591
+G D +V LG DN WY I + I
Sbjct: 642 --------------------GSGKSPD--------FVCLGEDNRWYIAA---IADLLDIN 670
Query: 592 FPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSS 651
++ L++ +P L+K ++ G W +G +T S +
Sbjct: 671 PGSIPLSEIAEIPLPN----LEKVQL-----------GPW-RKGDEKTAKLSQQIK---- 710
Query: 652 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYK---KIVDTVKFTEEK 708
+ E++ S+ EQ+ +V L+ K+ ++YK +I++ + ++
Sbjct: 711 -GYAQELVEESY--------LIEQQQQVEILEAKL-NNHPLQQYKNPGQILEKFEDRQQL 760
Query: 709 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768
+ L A R +R + + W+EFL + ++ + ALD T + LGE AA IRG+N
Sbjct: 761 QEELHAIQIRY-QRHQSKKSYYWEEFLHLIEILQQFNALDGYTPTL--LGEAAATIRGDN 817
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN---- 824
ELW+ +VL + L L+P LAA ++L++E ++ + S Y PS VI V
Sbjct: 818 ELWVGLVLMSGELEQLEPPHLAAAVSALITETLR----PDTMSYYPPSLQVIEVFQRQPK 873
Query: 825 ------------------------------------VLDEHRSSFLELQEKHGVEIPCCL 848
L E R + Q + + IP L
Sbjct: 874 GEETLEILILRAHLAKEAYWLWFFAVLYRLVKGGPVSLQETRRQLFQSQRQKMITIPVWL 933
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G W+++ +LD+GDL RLLRRT+DLL QIP +P V L++NA
Sbjct: 934 EDELMGLVEAWARGTEWQDLCDATSLDEGDLVRLLRRTVDLLWQIPYIPGVSAMLRQNAK 993
Query: 909 DASNVMDRPPI 919
+A M R P+
Sbjct: 994 EAIIAMKRFPV 1004
>gi|78779944|ref|YP_398056.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78713443|gb|ABB50620.1| DEAD/DEAH box helicase-like protein [Prochlorococcus marinus str.
MIT 9312]
Length = 908
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 291/911 (31%), Positives = 462/911 (50%), Gaps = 155/911 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG
Sbjct: 121 LENLESVILDECHYMNDPQRGTVWEETIIHCPSRTQIIALSATIANADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLINSDKRPVPLDFIFCSVKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q + + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKKRGKVGRIMQPKSPSIGFLISKLAERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG
Sbjct: 266 RRGCDKAIENIKDLTLVSYSEANMISQKLDLYLKNNQEAIKDKSQCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKET 432
+LE++++L+++SFG+++ G N +L D +L +++K
Sbjct: 444 -----------------TLEKSKELIKRSFGSFLYLDESSGDNAILENLDKDLIELKK-- 484
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
+TS +S + D AY+++ N LK E+R L ++ K + +
Sbjct: 485 --ITSNVSWNDFD----------AYEKLKN---RLKEERRLLKILEKQAAEKLSEEITNA 529
Query: 493 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLA 550
L ++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 530 LPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL---- 579
Query: 551 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 610
+K SY V++ +D + + +G P+ S
Sbjct: 580 -----------IKASYIVSIFND----------LDAIDVLGL---------EAPKMYFSG 609
Query: 611 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 670
+ +G+ + + AD + L+T + L VL+ + + + + V
Sbjct: 610 EVVRGDDMSQCFADRILE--VSKKNDLQTPQYDLTTEVLAQRQQINAL-------EEKVT 660
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
++ R +R KK K+IVD + E I++ R K E
Sbjct: 661 DHTAHRFGDSRKLKKYR--------KRIVDVEQ--EINIRKKLLRDK---------ENHN 701
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +LA
Sbjct: 702 WRTFTDLIQILNHFGCL--NDLELTEVGQTVCAIRSENELWIGLVLVSGYLDDLDPPELA 759
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
A+ ++ + + LW N ++PS V++V N LD R Q K +EIP L+
Sbjct: 760 AIIQAICVDVRRPNLWCN----FKPSLKVLDVFNELDGLRKLVASQQNKFHIEIPIYLEI 815
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ +G++ AWA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 816 ELTGIISAWARGEKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLA 875
Query: 911 SNVMDRPPISE 921
++R P+SE
Sbjct: 876 LKAINRFPVSE 886
>gi|218246136|ref|YP_002371507.1| DSH domain-containing protein [Cyanothece sp. PCC 8801]
gi|218166614|gb|ACK65351.1| DSH domain protein [Cyanothece sp. PCC 8801]
Length = 967
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 310/994 (31%), Positives = 449/994 (45%), Gaps = 221/994 (22%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 118 FRNMLYETPIGQVGT--SLENVATVILDECHYISDRGRGTVWEESIIYCPPNIQLVALSA 175
Query: 63 TVANADELAGWIGQIH-------------GKTELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N ++L WI Q+ ELI S RPVPL ++FSTK L PLL+
Sbjct: 176 TIGNPEQLTDWINQVRLTAPGVDPKSDAVSLCELINSDFRPVPLRFFFSTKKGLAPLLNP 235
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
K +N +L +K +++R
Sbjct: 236 KQTALNPRLK-------------FKGNPNKKRR--------------------------- 255
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
++R P ++ + L +D+LPAI+ IF+RRGCD +VQ LE L++ E ++ L
Sbjct: 256 -LKREDCPSLLTVIKQLEKQDLLPAIYVIFSRRGCDQSVQRLEGITLVNPEEAHALQYNL 314
Query: 230 KRFRI--------------------LY-----------PDA------------------- 239
F + LY PDA
Sbjct: 315 LTFFLAENPRLQESLLEAVKTENPPLYQPLLDFLSSPIPDADLFDYLARDQETKLHLFQL 374
Query: 240 -------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
VR ++ L +G+A HHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMP
Sbjct: 375 LATTSQLVRSDQLEPLTRGIAVHHAGILPVWKELVEQLFEAGLVKVVFATATLSAGINMP 434
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
ART V+S+LSKRT +G LT +E Q+AGRAGRRG+D G+VV VQTP+EGA+E L
Sbjct: 435 ARTTVISALSKRTDTGHGMLTPSEFLQIAGRAGRRGMDEVGYVVTVQTPFEGAQEAAFLA 494
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
AG EPL S FT SYGMVLNLL +L EA+ L+E+SF Y
Sbjct: 495 TAGSEPLKSCFTPSYGMVLNLL-------------------QKHTLNEAKHLLERSFAEY 535
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ AK ++ Q+ LT+E++ + LSE+ L+ LK E+R
Sbjct: 536 L-------AKLKIEPEQQAIAALTTELTQLDMALAG---LSESELFGYEKLKARLKEEQR 585
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSS 532
L + E R + +L G L +L GK + +
Sbjct: 586 LLKLLEEQAEETRKQQILPLLAKLNTGDLLYLK------------------GKHLKVATP 627
Query: 533 KLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGF 592
+L + + +G D ++ LG DN WY I +
Sbjct: 628 QLAVLVG---------MVPGSGQVPD--------FLCLGEDNRWYLVKRADIVEINSASL 670
Query: 593 PNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSL 652
P +L Q LP + + L KG E C + S + V++
Sbjct: 671 PRESL-QSLNLP-DLEACRLGKGP------KGDETSRQICQQMGDRAVSLKIAPEVMAQQ 722
Query: 653 SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 712
DE+ + E H E R ARL K + +E I V+F
Sbjct: 723 QRLDEI-QRTLEQHPL-----ENRKNPARLLKLHHQRLRLREQLHI-SQVRF-------- 767
Query: 713 KARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWL 772
++++ + W+EFL + ++ E AL+ PLG+ A IR ENELWL
Sbjct: 768 --------QKLQSSQSYYWEEFLNLIEILREFEALEGYHPT--PLGQACATIRAENELWL 817
Query: 773 AMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------V 825
+V+ + L L+ QLAA ++L++E ++ W N Y PS +I +
Sbjct: 818 GLVMMSGALERLESPQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVS 873
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
L E R + Q ++ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRR
Sbjct: 874 LQEIRRLLYQTQSRYHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRR 933
Query: 886 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
TIDLL QIP++P V L+ A +A + R P+
Sbjct: 934 TIDLLWQIPQIPAVSDYLKDTAKEAVTRLKRFPL 967
>gi|257059185|ref|YP_003137073.1| DSH domain-containing protein [Cyanothece sp. PCC 8802]
gi|256589351|gb|ACV00238.1| DSH domain protein [Cyanothece sp. PCC 8802]
Length = 967
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 310/994 (31%), Positives = 449/994 (45%), Gaps = 221/994 (22%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 118 FRNMLYETPIGQVGT--SLENVATVILDECHYISDRGRGTVWEESIIYCPPNIQLVALSA 175
Query: 63 TVANADELAGWIGQIH-------------GKTELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N ++L WI Q+ ELI S RPVPL ++FSTK L PLL+
Sbjct: 176 TIGNPEQLTDWINQVRLTAPGVDPKSDAVSLCELINSDFRPVPLRFFFSTKKGLAPLLNP 235
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
K +N +L +K +++R
Sbjct: 236 KQTALNPRLK-------------FKGNPNKKRR--------------------------- 255
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
++R P ++ + L +D+LPAI+ IF+RRGCD +VQ LE L++ E ++ L
Sbjct: 256 -LKREDCPSLLTVIKQLEKQDLLPAIYVIFSRRGCDQSVQRLEGITLVNPEEAHALQYNL 314
Query: 230 KRFRI--------------------LY-----------PDA------------------- 239
F + LY PDA
Sbjct: 315 LTFFLAENPRLQESLLEAVKTENPPLYQPLLDFLSSPIPDADLFDYLARDQETKLHLFQL 374
Query: 240 -------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
VR ++ L +G+A HHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMP
Sbjct: 375 LATTSQLVRSDQLEPLTRGIAVHHAGILPVWKELVEQLFEAGLVKVVFATATLSAGINMP 434
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
ART V+S+LSKRT +G LT +E Q+AGRAGRRG+D G+VV VQTP+EGA+E L
Sbjct: 435 ARTTVISALSKRTDTGHGMLTPSEFLQIAGRAGRRGMDEVGYVVTVQTPFEGAQEAAFLA 494
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
AG EPL S FT SYGMVLNLL +L EA+ L+E+SF Y
Sbjct: 495 TAGSEPLKSCFTPSYGMVLNLL-------------------QKHTLNEAKHLLERSFAEY 535
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ AK ++ Q+ LT+E++ + LSE+ L+ LK E+R
Sbjct: 536 L-------AKLKIEPEQQAIAALTTELTQLDMALAG---LSESELFGYEKLKARLKEEQR 585
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSS 532
L + E R + +L G L +L GK + +
Sbjct: 586 LLKLLEEQAEETRKQQIFPLLAKLNTGDLLYLK------------------GKHLKVATP 627
Query: 533 KLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGF 592
+L + + +G D ++ LG DN WY I +
Sbjct: 628 QLAVLVG---------MVPGSGQAPD--------FLCLGEDNRWYLVKRADIVEINSASL 670
Query: 593 PNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSL 652
P +L Q LP + + L KG E C + S + V++
Sbjct: 671 PRESL-QSLNLP-DLEACRLGKGP------KGDETSRQVCQQMGDRAVSLKIAPEVMAQQ 722
Query: 653 SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 712
DE+ + E H E R ARL K + +E I V+F
Sbjct: 723 QRLDEI-QRTLEQHPL-----ENRKNPARLLKLHHQRLRLREQLHI-SQVRF-------- 767
Query: 713 KARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWL 772
++++ + W+EFL + ++ E AL+ PLG+ A IR ENELWL
Sbjct: 768 --------QKLQSSQSYYWEEFLNLIEILREFEALEGYHPT--PLGQACATIRAENELWL 817
Query: 773 AMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------V 825
+V+ + L L+ QLAA ++L++E ++ W N Y PS +I +
Sbjct: 818 GLVMMSGALERLESPQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVS 873
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
L E R + Q ++ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRR
Sbjct: 874 LQEIRRLLYQTQSRYHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRR 933
Query: 886 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
TIDLL QIP++P V L+ A +A + R P+
Sbjct: 934 TIDLLWQIPQIPGVSDYLKDTAKEAVTRLKRFPL 967
>gi|123966880|ref|YP_001011961.1| DNA helicase [Prochlorococcus marinus str. MIT 9515]
gi|123201246|gb|ABM72854.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9515]
Length = 908
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 295/909 (32%), Positives = 459/909 (50%), Gaps = 151/909 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT++NAD+L WI ++HG
Sbjct: 121 LVNLESVILDECHYMNDPQRGTVWEETIIHCPSRAQIIALSATISNADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S +RPVPL + F + L PLL+ KG
Sbjct: 181 TVLVNSDKRPVPLDFMFCSAKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q K + I + +VP + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKKKGKVGRIMQPKVPPIAFVVSKLSERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RRGCD AV+Y++D +L+ E + + L + + V++ + L +G+A+HHAG
Sbjct: 266 RRGCDKAVEYIKDLSLVSYSEANLISQRLDVYLKNNEEGVKDKFHCEALKRGIASHHAGL 325
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E Q
Sbjct: 326 LPAWKELVEELFQKGLIKVVFATETLAAGINMPARTTVISSLSKRTDEGHRLLFSSEFLQ 385
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG D +G+VV +QT +EGA+E L + PLVSQFT SYGMVLNLL
Sbjct: 386 MSGRAGRRGKDLQGYVVTLQTRFEGAKEASTLAISQPNPLVSQFTPSYGMVLNLLQNY-- 443
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGN--YVG-SNVMLAAKDELCKIQKETDVLT 436
SL+++R+L+++SFG+ Y+G S+ + D L K +E +T
Sbjct: 444 -----------------SLDKSRELIKRSFGSFLYLGESSEEMVILDNLEKDLQELKKIT 486
Query: 437 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 496
+ IS D Y++M + LK E+R L ++ K + L
Sbjct: 487 TNISWQDFD----------LYEKM---KSRLKEERRLLRILEKQSAEKLSEEITSALTYI 533
Query: 497 ENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLAQSNG 554
++G L + K + VPA+ K +S+K+ ++ +I++ F L
Sbjct: 534 KDGSL----ISIKAPQIKRKVVPAMICKKI--YESNKITSLLCLTIDNLFIL-------- 579
Query: 555 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 614
+KPSY V + FP++ E L L++
Sbjct: 580 -------IKPSYIVNI---------------------FPDL---------EEIKILKLEE 602
Query: 615 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 674
+M F G + G+ E+ + + + E E + +D E
Sbjct: 603 PKM--------NFSG-EVVRGNDESQTLA------HKIFEISEKYDLRTPQYDLTTEVLE 647
Query: 675 QRTKVARLKKKIARTEG--FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 732
QR + L +KI+ F + KK+ K ++I ++ R +E E WK
Sbjct: 648 QRKLITNLDEKISNQPAHKFGDSKKL----KRYRKRIIEIEQEIIRRNNLLEDKENHNWK 703
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F ++ +++ L N + +G++ AIR ENELW+ +VL + L DL P LAA+
Sbjct: 704 KFTNLTKILNHFGCL--NNLELTEVGQSVGAIRSENELWVGLVLLSGYLDDLTPPDLAAI 761
Query: 793 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 852
++ + + +W N ++PS VI V N L+ Q+ ++ P L+ +
Sbjct: 762 IQAICVDVRRPNVWCN----FKPSIKVIEVFNELEGLGKLVASKQKNFNIDTPIFLEIEL 817
Query: 853 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 912
+G++ WASG W+E++ + +LD+GD+ R+LRR++D+L+QI V +L++ A A
Sbjct: 818 TGIISEWASGKKWKELIFNTSLDEGDVVRILRRSMDVLSQIQYCVGVSNKLKQKAKLALK 877
Query: 913 VMDRPPISE 921
++R P+SE
Sbjct: 878 AINRFPVSE 886
>gi|159027769|emb|CAO89639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 966
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 316/1001 (31%), Positives = 456/1001 (45%), Gaps = 236/1001 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 118 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 175
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 176 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 235
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 236 SKVNPKLH--------SKVG---HGKPRR------------------------------L 254
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 255 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 314
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 315 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFL 374
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 375 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 434
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 435 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 494
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 495 AQPEPLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL 535
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEK 471
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 536 -------ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEK 574
Query: 472 RFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS 531
K ++ + K E + +P + +G L
Sbjct: 575 LRERLREEERLYKILASQSEAQKRQE----------------IHLKLPNIPIGTILHLKG 618
Query: 532 SKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIG 591
+K + F +N L + V+ V LGSDN WY I + R G
Sbjct: 619 KHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-G 667
Query: 592 FPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLN 645
F A A G+ +P ++ L KGE + +AD + G+
Sbjct: 668 FITPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PP 713
Query: 646 VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 705
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 714 VAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLH 760
Query: 706 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 765
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA IR
Sbjct: 761 KTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIR 809
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 810 GENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQ 865
Query: 826 -------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GD
Sbjct: 866 GEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGD 925
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
L RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 926 LVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 966
>gi|443647322|ref|ZP_21129678.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
gi|443335499|gb|ELS49967.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
Length = 975
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 316/1001 (31%), Positives = 456/1001 (45%), Gaps = 236/1001 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLH--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEK 471
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 -------ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEK 583
Query: 472 RFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS 531
K ++ + K E + +P + +G L
Sbjct: 584 LRERLREEERLYKILASQSEAQKRQE----------------IHLKLPNIPIGTILHLKG 627
Query: 532 SKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIG 591
+K + F +N L + V+ V LGSDN WY I + R G
Sbjct: 628 KHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-G 676
Query: 592 FPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLN 645
F A A G+ +P ++ L KGE + +AD + G+
Sbjct: 677 FITPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PP 722
Query: 646 VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 705
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 723 VAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLH 769
Query: 706 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 765
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA IR
Sbjct: 770 KTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIR 818
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 819 GENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQ 874
Query: 826 -------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GD
Sbjct: 875 GEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGD 934
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
L RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 935 LVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|33862023|ref|NP_893584.1| DNA helicase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634241|emb|CAE19926.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 908
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 293/912 (32%), Positives = 449/912 (49%), Gaps = 157/912 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT++NAD+L WI ++HG
Sbjct: 121 LVNLESVILDECHYMNDPQRGTVWEETIIHCPSRAQIIALSATISNADQLQNWIEKVHGP 180
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S++RPVPL + F + L PLL+ KG
Sbjct: 181 TVLVNSNKRPVPLDFIFCSAKGLHPLLNNKGN---------------------------- 212
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ N + + Q K + I + + P + + L R+MLPAI+FIF+
Sbjct: 213 -------GIHPNCKIWRAPKGQKKKGKVGRIMQPKAPPIAFVVSKLAERNMLPAIYFIFS 265
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK------GLLKGVAA 254
RRGCD AV+Y++D +L+ SE L +R + + E IK L +G+A+
Sbjct: 266 RRGCDKAVEYIKDLSLVS---YSEANLISQRLDVYLKN--NEEGIKDKFHCEALKRGIAS 320
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L S
Sbjct: 321 HHAGLLPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDEGHRLLFS 380
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+E QM+GRAGRRG D +G+VV +QT +EGA+E L + PLVSQFT SYGMVLNLL
Sbjct: 381 SEFLQMSGRAGRRGKDLQGYVVTLQTRFEGAKEASSLAISEPNPLVSQFTPSYGMVLNLL 440
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN--YVG-SNVMLAAKDELCKIQKE 431
SL+++R+L+++SFG+ Y+G S+ A L + KE
Sbjct: 441 QNY-------------------SLDKSRELIKRSFGSFLYLGESSEETAILYNLGRDLKE 481
Query: 432 TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKD 491
+TS IS D + L+ LK E+R L ++ K +
Sbjct: 482 LKKITSNISWQDFDSYEK-------------LKSRLKEERRLLRILEKQAAEKLSEEITS 528
Query: 492 ILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRL 549
L ++G L + K + VPA+ K +S K+K++ +I++ F L
Sbjct: 529 ALTFIKDGSL----ISIKAPQINRKVVPALICKKI--YESKKIKSLLCLTIDNLFIL--- 579
Query: 550 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 609
+KPSY V + D + G + +GD + +
Sbjct: 580 ------------IKPSYIVNIFPDLEEIEILRLEEPKMNFSG----EVVRGDNESQTFVD 623
Query: 610 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 669
+ D E + L T + L+ VL+ +
Sbjct: 624 RIFDISE-----------------KYDLRTPQYDLSTEVLAQ--------------KKLI 652
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS 729
N +E T + K ++ K Y+K + ++ +E + + +E+ E
Sbjct: 653 TNLEETITN--QPAHKFGDSKKLKRYRKRI--IEIEQEIVMK--------NNLMEEKENH 700
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W +F + +++ L N + +G++ AIR ENELW+ +VL + L DL P L
Sbjct: 701 NWIKFTDLIKILNHFGCL--NDLELTEVGQSVGAIRSENELWVGLVLLSGYLDDLAPPDL 758
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA+ ++ + + LW N ++PS VI+V N L+ R Q K + P L+
Sbjct: 759 AAIIQAICVDVRRPNLWCN----FKPSIKVIDVFNELESLRKLVASKQNKFNINTPIFLE 814
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
++ +G++ WA G W+E++ + +LD+GD+ R+LRR++D+L+QI V +L+ A
Sbjct: 815 TELTGIISEWARGKKWKELIFNTSLDEGDVVRILRRSMDVLSQIQYCVGVSNKLKNKAKL 874
Query: 910 ASNVMDRPPISE 921
A ++R P+SE
Sbjct: 875 ALKAINRFPVSE 886
>gi|425447074|ref|ZP_18827068.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
gi|389732453|emb|CCI03611.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
Length = 975
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 318/1002 (31%), Positives = 456/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYRTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL+++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNQEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEEAKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+ E+A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTT---------------------ELAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQSEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFLTPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAIITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425470310|ref|ZP_18849180.1| putative helicase [Microcystis aeruginosa PCC 9701]
gi|389884126|emb|CCI35561.1| putative helicase [Microcystis aeruginosa PCC 9701]
Length = 975
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 314/1008 (31%), Positives = 455/1008 (45%), Gaps = 250/1008 (24%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLPQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEEVKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKS---------RRLLSEAAYKEMANLQ 464
+ + ++ + E L E++ I+R+ R E YK +A+
Sbjct: 545 ARLKLSPERQQITALTTELAKLDMELA--GIEREQVFSYEKLRERLREEERLYKILASQS 602
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 524
E K R+ + LK + + + H+ V VPA+++
Sbjct: 603 EAQK---------RQEIHLKLPNIPVGTILHLKGKHI-----------KVPVPVPAIFVN 642
Query: 525 KFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 584
+ +++ + V LGSDN WY I
Sbjct: 643 TLHG--AGQVRTL------------------------------VCLGSDNRWYLAAYADI 670
Query: 585 KTVYRIGFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLE 638
+ R GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 671 SEIDR-GFITPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------- 720
Query: 639 TWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKI 698
V L++ S+ E+++ H ++R RL K Y +
Sbjct: 721 -----PPVAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDRE 762
Query: 699 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLG 758
+ K + +IK K +S++ W+EFL + ++ E +AL++ PLG
Sbjct: 763 LARDKLHKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALEVYLPT--PLG 811
Query: 759 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 818
E AA IRGENELWL + + + L L P+QLAA +++++E + W N Y P
Sbjct: 812 EAAATIRGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPE 867
Query: 819 VINVINV-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
VI+++ L E R + Q ++ + IP L++Q G+ WA G +W E+ +
Sbjct: 868 VIDILRQGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCEN 927
Query: 872 CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
+LD+GDL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 928 TSLDEGDLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425437614|ref|ZP_18818029.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
gi|389677388|emb|CCH93670.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
Length = 975
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 317/1002 (31%), Positives = 454/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLH--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+E +A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTTE---------------------LAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFLTPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|440754684|ref|ZP_20933886.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
gi|440174890|gb|ELP54259.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
Length = 975
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 317/1002 (31%), Positives = 454/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLH--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+E +A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTTE---------------------LAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFLTPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425442478|ref|ZP_18822721.1| putative helicase [Microcystis aeruginosa PCC 9717]
gi|389716493|emb|CCH99283.1| putative helicase [Microcystis aeruginosa PCC 9717]
Length = 975
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 313/1008 (31%), Positives = 456/1008 (45%), Gaps = 250/1008 (24%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLPQSGDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL+++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNQEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDDQLLSLLTAAPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEEAKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKS---------RRLLSEAAYKEMANLQ 464
+ + ++ + E L E++ I+R+ R E YK +A+
Sbjct: 545 ARLKLSPERQQITALTTELAKLDMELA--GIEREQVFSYEKLRERLREEERLYKILASQS 602
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 524
E K R+ + LK + + + H+ V VPA+++
Sbjct: 603 EAQK---------RQEIHLKLPNIPVGTILHLKGKHI-----------KVPVPVPAIFVN 642
Query: 525 KFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 584
+ +++ + V LGSDN WY I
Sbjct: 643 TLHG--AGQVRTL------------------------------VCLGSDNRWYLAAYADI 670
Query: 585 KTVYRIGFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLE 638
+ R GF A G+ +P ++ L KGE + +AD + G+
Sbjct: 671 SEIDR-GFLTPA-ELGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------- 720
Query: 639 TWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKI 698
V L++ ++ E+++ H ++R RL K Y +
Sbjct: 721 -----PPVAELATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDRE 762
Query: 699 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLG 758
+ K + +IK K +S++ W+EFL + ++ E +AL+ + PLG
Sbjct: 763 IARDKLHKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLG 811
Query: 759 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 818
E AA IRGENELWL + + + L L P+QLAA +++++E + W N Y P
Sbjct: 812 EAAATIRGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPE 867
Query: 819 VINVINV-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
VI+++ L E R + Q ++ + IP L++Q G+ WA G +W E+ +
Sbjct: 868 VIDILRQGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCEN 927
Query: 872 CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
+LD+GDL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 928 TSLDEGDLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425463422|ref|ZP_18842761.1| putative helicase [Microcystis aeruginosa PCC 9809]
gi|389833252|emb|CCI22398.1| putative helicase [Microcystis aeruginosa PCC 9809]
Length = 975
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 315/997 (31%), Positives = 459/997 (46%), Gaps = 228/997 (22%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYKTPIGQVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIG-----------QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI Q ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLPQPGDNQQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTITSIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
EL + F + P
Sbjct: 324 FFLEDNPNLQELTISFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
A+ +L +++ LT+E++ +D E+A ++ E+ F
Sbjct: 545 -------ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVF 579
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 533
E R + K I E + + + +P + +G L
Sbjct: 580 SYEKLRERLREEERLYKIIASQSEA----------QKRQEIHLKLPNIPVGTILHLKGKH 629
Query: 534 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 593
+K + F +N L + V+ V LGSDN WY I + R GF
Sbjct: 630 IKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GF- 677
Query: 594 NVALAQ-GDALPRETMSLLLD---KGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVL 649
+A A+ G+ +P ++ L KGE + +AD + + +E L
Sbjct: 678 -LAPAELGELIPPSLAAVSLGGWRKGEENTQAIADFIPQQVQGIPPVVE----------L 726
Query: 650 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 709
+ ++ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ETQAQRIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKAQI 773
Query: 710 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 769
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 770 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 825
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 826 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 882
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 883 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|166364041|ref|YP_001656314.1| putative helicase [Microcystis aeruginosa NIES-843]
gi|166086414|dbj|BAG01122.1| putative helicase [Microcystis aeruginosa NIES-843]
Length = 975
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 312/1006 (31%), Positives = 456/1006 (45%), Gaps = 246/1006 (24%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYKTPIGQVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIG-----------QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI Q ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLPQPGDNQQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
EL + F + P
Sbjct: 324 FFLEDNPNLQELTISFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKS---------RRLLSEAAYKEMANLQ 464
+ + ++ + E L E++ I+R+ R E YK +A+
Sbjct: 545 ARLKLSPERQQITALTTELAKLDMELA--GIEREQVFSYEKLRERLREEERLYKIIASQS 602
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 524
E K R+ + LK + I+ + H+ V VPA+++
Sbjct: 603 EAQK---------RQEIHLKLPNIPVGIILHLKGKHI-----------KVPVPVPAIFVN 642
Query: 525 KFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 584
+ +++ + V LGSDN WY I
Sbjct: 643 TLHG--AGQVRTL------------------------------VCLGSDNRWYLAAYADI 670
Query: 585 KTVYRIGFPNVALAQ-GDALPRETMSLLLD---KGEMLWEKLADSEFGGLWCMEGSLETW 640
+ R GF +A A+ G+ +P ++ L KGE + +AD + + +E
Sbjct: 671 SEIDR-GF--LAPAELGELIPPSLAAVSLGGWRKGEENTQAIADFIPQQVQGIPPVVE-- 725
Query: 641 SWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVD 700
L + ++ E+++ H ++R RL K Y + +
Sbjct: 726 --------LETQAQKIEIINSQIAAHPL-----QKRKNPGRLMKLY--------YDREIA 764
Query: 701 TVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGET 760
K + +IK K +S++ W+EFL + ++ E +AL+ + PLGE
Sbjct: 765 RDKLHKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEA 813
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
AA IRGENELWL + + + L L P+QLAA +++++E + W N Y P VI
Sbjct: 814 AATIRGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVI 869
Query: 821 NVINV-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+++ L E R + Q ++ + IP L++Q G+ WA G +W E+ + +
Sbjct: 870 DILRQGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTS 929
Query: 874 LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
LD+GDL RLLRRT+D+L QIP++P V L+ NA A M R P+
Sbjct: 930 LDEGDLVRLLRRTVDVLWQIPQIPRVSPVLKDNARLAVTAMKRFPL 975
>gi|425448713|ref|ZP_18828557.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
gi|389763993|emb|CCI09599.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
Length = 975
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 316/1002 (31%), Positives = 454/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLH--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+ E+A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTT---------------------ELAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + +
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDQ- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFLTPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ S+ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425455182|ref|ZP_18834907.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
gi|389803963|emb|CCI17159.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
Length = 975
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 316/1002 (31%), Positives = 454/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTAAPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+ E+A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTT---------------------ELAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQSEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFITPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ ++ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|427724831|ref|YP_007072108.1| DSH domain-containing protein [Leptolyngbya sp. PCC 7376]
gi|427356551|gb|AFY39274.1| DSH domain protein [Leptolyngbya sp. PCC 7376]
Length = 960
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 315/999 (31%), Positives = 463/999 (46%), Gaps = 227/999 (22%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+S+ RGTVWEE IIYCP EVQI+ LSA
Sbjct: 107 FRNMLYETPIGEVGT--SLVNVSTVILDECHYISNRGRGTVWEESIIYCPSEVQIVALSA 164
Query: 63 TVANADELAGWIGQI-------HGKTE-----LITSSRRPVPLTWYFSTKTALLPLLDEK 110
T+ N + WI + H ++E L+ S RPVPL ++FS+K L PL D K
Sbjct: 165 TIGNPEIFTAWINRTRLAAHEDHPESEAHRCQLVDSDHRPVPLKFFFSSKKGLFPLFDSK 224
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
G MN KL R RN+
Sbjct: 225 GNKMNPKL--------------------RSRNNAPQGKRRKR------------------ 246
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-------------- 216
RR P + + LR +D+LPAI+ IF+RRGCD +V L+D NL
Sbjct: 247 -RREDCPSLFAIVRQLRQQDLLPAIYIIFSRRGCDRSVTQLDDVNLVTPEEAKLLAATLL 305
Query: 217 --------------LDEC-EMSEVELALKRF----------RILYPDA------------ 239
L +C E+ E++ L F + Y DA
Sbjct: 306 HFFLDRQEKLQEKILAQCAELPELKALLLDFIAKNPFSTEKLVDYLDANLELRQQLWEFF 365
Query: 240 ------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R I+ LL+G+AAHHAG LP WK +E+LF+ GLVK+VFAT TLAAGINMPA
Sbjct: 366 AKESKFARPGQIEPLLRGLAAHHAGILPAWKELVEKLFEMGLVKLVFATATLAAGINMPA 425
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKR+ G LT +E QMAGRAGRRG+D GHVV ++TP+EG++E +L
Sbjct: 426 RTTVISALSKRSDEGHRMLTPSEFLQMAGRAGRRGMDKVGHVVTIETPFEGSKEAARLAL 485
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S FT SYGMVLNLL +LEE+++L+ +SF Y
Sbjct: 486 AEAEPLRSWFTPSYGMVLNLL-------------------QKHTLEESKELLSRSFAEY- 525
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
+++L Q+ LT+EI+ I S +S+ + + L+E LK E+R
Sbjct: 526 ------QVQEKLSPEQEAIAELTTEIARIDIGLAS---ISDKDFDRYSKLKERLKEEERL 576
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 533
LR + E + L IL+ G + L L+ K+ V+ V AV + F+ D
Sbjct: 577 LRILRDQAEDETKKILAPILETLPLGSI--LHLKGKNLR-VKEPVTAVLVEVFEEKDRPT 633
Query: 534 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 593
L + LG+D WY + + +P
Sbjct: 634 L---------------------------------LCLGADKRWYQVIYTDVAALNEGLYP 660
Query: 594 NVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS 653
L Q ET+ L G ++ ++ P++ ++
Sbjct: 661 TEKLEQIPLPVDETLKL---------------------GKNGKIDKEAY----PLVKLIA 695
Query: 654 ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYK--KIVDTVKFTEEKIKR 711
E + E +A E QR ++ ++ K A + K K K++ + +E +K
Sbjct: 696 E------YTAELIEAPE-VAAQRQRMEAIQAKFAASPLSKLDKPGKLLKRHQRRKELLKE 748
Query: 712 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 771
L R + L ++ W++FL + V+ + AL+ + LG AA IRGENELW
Sbjct: 749 LN-RRQTLYRQHSSKRSYYWQDFLNLIQVLQDFNALNQYKPTV--LGRAAATIRGENELW 805
Query: 772 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV------ 825
LA+ L + L L P LAA +++SE + W + Y V+ V+ +
Sbjct: 806 LALCLMSGQLNKLSPEHLAAAICAIISEPPRPDSWTD----YSQPKPVLEVLGIRKKDQG 861
Query: 826 -----LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
L E R ++Q+ GV +P L+S+F G++E WA G W E+ + +LD+GD+
Sbjct: 862 HNPVSLWELRRQLYQVQKHSGVTMPVWLESKFVGLIEQWALGTDWTELCENTSLDEGDIV 921
Query: 881 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
R+LRRT+D+L QIP++P++D L + A +A M R P+
Sbjct: 922 RMLRRTVDVLWQIPQIPEIDPDLMRTAKEAVAKMKRFPV 960
>gi|425460627|ref|ZP_18840108.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
gi|389826671|emb|CCI22669.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
Length = 975
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 315/1002 (31%), Positives = 452/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLH--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAI 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEETKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+E +A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTTE---------------------LAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR- 675
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
GF A A G+ +P ++ L KGE + +AD + G+
Sbjct: 676 GFLTPA-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ S+ E+++ H ++ R ++IAR K
Sbjct: 722 PVAELATQSQKIEIVNSQIAAHPLQKHKNPGRLMKLYYDREIARD-------------KL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSPVLKDNARLAVTAMKRFPL 975
>gi|422304231|ref|ZP_16391578.1| putative helicase [Microcystis aeruginosa PCC 9806]
gi|389790698|emb|CCI13449.1| putative helicase [Microcystis aeruginosa PCC 9806]
Length = 975
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 314/1002 (31%), Positives = 452/1002 (45%), Gaps = 238/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 127 FRNMLYQTPIGEVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSA 184
Query: 63 TVANADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ N EL WI + ELI S RPVPL +YF+ K L PLLD K
Sbjct: 185 TIGNPGELTDWINWVRQLRQSGDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQ 244
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N KL S+V G RR +
Sbjct: 245 SKVNPKLR--------SKVG---HGKPRR------------------------------L 263
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------ 225
+R P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 264 KREDCPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLI 323
Query: 226 ----------ELALKRFRILYP-------------------------------------- 237
ELAL F + P
Sbjct: 324 FFLEDNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADSETKNQLFEFL 383
Query: 238 ----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPA
Sbjct: 384 ASASQLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPA 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L
Sbjct: 444 RTTVISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAT 503
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
A EPL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 504 AQPEPLQSCFAPSYGMVLNLLQK-------------------HSLEEVKDLLERSFAEYL 544
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA---E 470
A+ +L +++ LT+ E+A L EL E
Sbjct: 545 -------ARLKLSPERQQITALTT---------------------ELAKLDMELAGIERE 576
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
+ F E R + K + E + + + +P + +G L
Sbjct: 577 QVFSYEKLRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLK 626
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
+K + F +N L + V+ V LGSDN WY I + R
Sbjct: 627 GKHIKVPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDRG 676
Query: 591 GFPNVALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSL 644
P L G+ +P ++ L KGE + +AD + G+
Sbjct: 677 FLPPAEL--GELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------P 721
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V L++ ++ E+++ H ++R RL K Y + + K
Sbjct: 722 PVAELATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDRELARDKL 768
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA I
Sbjct: 769 HKTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATI 817
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 818 RGENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILR 873
Query: 825 V-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+G
Sbjct: 874 QGEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEG 933
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 934 DLVRLLRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|16332264|ref|NP_442992.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|383324005|ref|YP_005384859.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327174|ref|YP_005388028.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383493058|ref|YP_005410735.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438326|ref|YP_005653051.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|451816415|ref|YP_007452867.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|1653894|dbj|BAA18804.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|339275359|dbj|BAK51846.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|359273325|dbj|BAL30844.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276495|dbj|BAL34013.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279665|dbj|BAL37182.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451782384|gb|AGF53353.1| antiviral protein [Synechocystis sp. PCC 6803]
Length = 1006
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 304/1032 (29%), Positives = 454/1032 (43%), Gaps = 258/1032 (25%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +V DEVHY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 118 FRNMLYETPIGEVGT--SLEDVETVVFDEVHYISDRGRGTVWEESIIYCPSTIQLVGLSA 175
Query: 63 TVANADELAGWIGQIHGKTE-----------------LITSSRRPVPLTWYFSTKTALLP 105
T+ N ++L WI Q+ L+ S RPVPLT+++ST+ L P
Sbjct: 176 TIGNPEQLTEWINQVRTGVSLKVLRQGEQRNDSPPCVLVNSDFRPVPLTFHYSTRKGLFP 235
Query: 106 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 165
LL+EK +N +L L + K + G +RR
Sbjct: 236 LLNEKKTGVNTRL------LPKAGNKNTRSGKNRR------------------------- 264
Query: 166 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 225
+RR P + + L+ R++LP I+ IF+RRGC+ A Q LED +L++ E +
Sbjct: 265 -----MRREDCPYPLLVMQQLQERNLLPVIYVIFSRRGCEQAAQSLEDLSLVEPAEQESI 319
Query: 226 ELALKRF-------------RIL---YPDAVR-----------EPAIKGLLKGVAAHHAG 258
+L L F R L PD V+ A + LL +A G
Sbjct: 320 QLQLLDFFFGKNPLLRQKLERDLANGLPDLVQAVVAYLDHPQDSEAAQRLLTALAIDPEG 379
Query: 259 CLPIW---------------------------------KSFIEELFQRGLVKVVFATETL 285
+W K+ +E+LF++GL+KVVFAT TL
Sbjct: 380 MFKLWGWIAQSSPMTRFEQIEPLLRGIAVHHAGILPDMKTLVEKLFEQGLIKVVFATATL 439
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
+AGINMPART V+S+LSKRT G L+ +E Q+AGRAGRRG+D GHV+ VQTP+EGA
Sbjct: 440 SAGINMPARTTVISALSKRTNEGHAMLSPSEFLQIAGRAGRRGMDTEGHVITVQTPFEGA 499
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L A EPL S FT SYGMVLNLL LEE + L+
Sbjct: 500 NEASYLALAEAEPLKSWFTPSYGMVLNLL-------------------QKHDLEEVKSLL 540
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 465
E+SF Y+ + K + + K+ L +++ + E + +
Sbjct: 541 ERSFAEYLAQFALEPTKVAIAETVKKLSQLDIKLAG----------IGEKDLRSYEKFRG 590
Query: 466 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 525
L+ E+R L + E +R LKD LK G L +L G+
Sbjct: 591 RLREEQRLLKILEEQAEKERKQQLKDQLKTLAPGQLLYLK------------------GR 632
Query: 526 FDSLDSSKLKNM-ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 584
+ +L + A + + L + + LGSDN WY T +
Sbjct: 633 HVKIHQPRLAVIVAPLAPAHNLPQ------------------WCCLGSDNRWYHVT---V 671
Query: 585 KTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSL 644
+Y + N++ AQ L LL ++G ET + +
Sbjct: 672 GDIYAVPIGNLSPAQWQHLTPPPAELLAPGK----------------SVKGDEETLAIAA 715
Query: 645 NV-PVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIA--RTEGFKEYKKIVDT 701
+ P L S E++ EQ+ +V ++K +A K K+++
Sbjct: 716 GLDPQTYPLEPSPELV--------------EQQARVDHVEKLLAVHPLASQKHPGKLLEQ 761
Query: 702 VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETA 761
+E K L R + R++ + W+EFL + +++ E AL+ T + LGE A
Sbjct: 762 FHQRQELRKTLSKRQQEY-DRLQSRQSYYWQEFLDLIDILQEMEALEEYTPTL--LGEVA 818
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI- 820
A +RGENELWL + L + DL+P QLAA ++L++E + W + ++PS V+
Sbjct: 819 ATLRGENELWLGLALISGKFNDLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLA 874
Query: 821 -------------------------NVINVLD--------EHRSSFLELQEKHGVEIPCC 847
+ V D + R ++ Q + + IP
Sbjct: 875 ALRPSNDLFGLLFCLKHPQPPLALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLW 934
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
L+ F G+VE WA G+ W + +LD+GDL RL RRT+DLL QIP++P + RL++NA
Sbjct: 935 LEVDFMGLVEQWALGMEWENLCRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNA 994
Query: 908 VDASNVMDRPPI 919
A M R P+
Sbjct: 995 RIAVQQMKRFPL 1006
>gi|407960082|dbj|BAM53322.1| antiviral protein [Bacillus subtilis BEST7613]
Length = 1010
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 304/1032 (29%), Positives = 454/1032 (43%), Gaps = 258/1032 (25%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +V DEVHY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 122 FRNMLYETPIGEVGT--SLEDVETVVFDEVHYISDRGRGTVWEESIIYCPSTIQLVGLSA 179
Query: 63 TVANADELAGWIGQIHGKTE-----------------LITSSRRPVPLTWYFSTKTALLP 105
T+ N ++L WI Q+ L+ S RPVPLT+++ST+ L P
Sbjct: 180 TIGNPEQLTEWINQVRTGVSLKVLRQGEQRNDSPPCVLVNSDFRPVPLTFHYSTRKGLFP 239
Query: 106 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 165
LL+EK +N +L L + K + G +RR
Sbjct: 240 LLNEKKTGVNTRL------LPKAGNKNTRSGKNRR------------------------- 268
Query: 166 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 225
+RR P + + L+ R++LP I+ IF+RRGC+ A Q LED +L++ E +
Sbjct: 269 -----MRREDCPYPLLVMQQLQERNLLPVIYVIFSRRGCEQAAQSLEDLSLVEPAEQESI 323
Query: 226 ELALKRF-------------RIL---YPDAVR-----------EPAIKGLLKGVAAHHAG 258
+L L F R L PD V+ A + LL +A G
Sbjct: 324 QLQLLDFFFGKNPLLRQKLERDLANGLPDLVQAVVAYLDHPQDSEAAQRLLTALAIDPEG 383
Query: 259 CLPIW---------------------------------KSFIEELFQRGLVKVVFATETL 285
+W K+ +E+LF++GL+KVVFAT TL
Sbjct: 384 MFKLWGWIAQSSPMTRFEQIEPLLRGIAVHHAGILPDMKTLVEKLFEQGLIKVVFATATL 443
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
+AGINMPART V+S+LSKRT G L+ +E Q+AGRAGRRG+D GHV+ VQTP+EGA
Sbjct: 444 SAGINMPARTTVISALSKRTNEGHAMLSPSEFLQIAGRAGRRGMDTEGHVITVQTPFEGA 503
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L A EPL S FT SYGMVLNLL LEE + L+
Sbjct: 504 NEASYLALAEAEPLKSWFTPSYGMVLNLL-------------------QKHDLEEVKSLL 544
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 465
E+SF Y+ + K + + K+ L +++ + E + +
Sbjct: 545 ERSFAEYLAQFALEPTKVAIAETVKKLSQLDIKLAG----------IGEKDLRSYEKFRG 594
Query: 466 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 525
L+ E+R L + E +R LKD LK G L +L G+
Sbjct: 595 RLREEQRLLKILEEQAEKERKQQLKDQLKTLAPGQLLYLK------------------GR 636
Query: 526 FDSLDSSKLKNM-ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 584
+ +L + A + + L + + LGSDN WY T +
Sbjct: 637 HVKIHQPRLAVIVAPLAPAHNLPQ------------------WCCLGSDNRWYHVT---V 675
Query: 585 KTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSL 644
+Y + N++ AQ L LL ++G ET + +
Sbjct: 676 GDIYAVPIGNLSPAQWQHLTPPPAELLAPGK----------------SVKGDEETLAIAA 719
Query: 645 NV-PVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIA--RTEGFKEYKKIVDT 701
+ P L S E++ EQ+ +V ++K +A K K+++
Sbjct: 720 GLDPQTYPLEPSPELV--------------EQQARVDHVEKLLAVHPLASQKHPGKLLEQ 765
Query: 702 VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETA 761
+E K L R + R++ + W+EFL + +++ E AL+ T + LGE A
Sbjct: 766 FHQRQELRKTLSKRQQEY-DRLQSRQSYYWQEFLDLIDILQEMEALEEYTPTL--LGEVA 822
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI- 820
A +RGENELWL + L + DL+P QLAA ++L++E + W + ++PS V+
Sbjct: 823 ATLRGENELWLGLALISGKFNDLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLA 878
Query: 821 -------------------------NVINVLD--------EHRSSFLELQEKHGVEIPCC 847
+ V D + R ++ Q + + IP
Sbjct: 879 ALRPSNDLFGLLFCLKHPQPPLALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLW 938
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
L+ F G+VE WA G+ W + +LD+GDL RL RRT+DLL QIP++P + RL++NA
Sbjct: 939 LEVDFMGLVEQWALGMEWENLCRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNA 998
Query: 908 VDASNVMDRPPI 919
A M R P+
Sbjct: 999 RIAVQQMKRFPL 1010
>gi|428771864|ref|YP_007163652.1| DSH domain-containing protein [Cyanobacterium stanieri PCC 7202]
gi|428686143|gb|AFZ46003.1| DSH domain protein [Cyanobacterium stanieri PCC 7202]
Length = 970
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 306/1004 (30%), Positives = 454/1004 (45%), Gaps = 239/1004 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++S +G V + + +V +VLDE HY++D RGTVWEE IIYCP +Q++ LSA
Sbjct: 119 FRNMLYSTPIGEVGT--SVRNVQSVVLDECHYINDPGRGTVWEESIIYCPPHIQLVALSA 176
Query: 63 TVANADELAGWIGQIH---------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 113
TV N +L WI + + EL+ S RPVPL +YFS L L +K
Sbjct: 177 TVGNPQQLCDWINHVRRCHFQQGDFSRCELVNSDFRPVPLKFYFSHSKGLQNLFKDKTDK 236
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
+N +L S ++P K G R++
Sbjct: 237 INPQLK--------SLLRPNKRGRFDRKS------------------------------- 257
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD--------------- 218
P V L +++MLPAI+ IF+R+GCD AV+ L NL+
Sbjct: 258 --CPTVKGLTQQLNNQNMLPAIYIIFSRKGCDQAVESLNYVNLVSIEESKKILSYLLKFL 315
Query: 219 -----ECEMSEVELALKRFRILY------------------------------------- 236
E + VE A K I Y
Sbjct: 316 LLESIELQDKIVEFARKEHEITYDKIINFVTGKENAESELIEFLTEKPLLKERILRFLGD 375
Query: 237 -PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
+ VR I+ L +G+AAHHAG LP WK +E LF++GL+K+VFAT TLAAGINMPART
Sbjct: 376 NSELVRSSQIEPLTRGIAAHHAGILPAWKELVERLFEQGLIKIVFATATLAAGINMPART 435
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
++S+L KR G LT +E Q+AGRAGRRG+D+ G+VV VQTPYEG KL A
Sbjct: 436 TIISALRKRGDDGIRTLTPSEFLQIAGRAGRRGMDDVGYVVTVQTPYEGVLIASKLAKAE 495
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
E L S FT SYGMVLNLL ++EEA++L+E SF Y+
Sbjct: 496 PEALRSWFTPSYGMVLNLLQK-------------------HTIEEAKQLLELSFAEYL-- 534
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY--KEMAN---LQEELKAE 470
A+++L ++ T EI+ R + A Y KE+A+ L+E LK E
Sbjct: 535 -----AQEQLNPQEEAIASYTREIT--------RLDVGLAGYNSKELASYEKLKERLKQE 581
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLD 530
K+ ++ +R ALK S+P + G SL+
Sbjct: 582 KKILKLFQKNWRQQRVEALKP-------------------------SIPNLVPGNILSLN 616
Query: 531 SSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRI 590
KN A I ++ + +++ +N D ++++LG DN WY I +V I
Sbjct: 617 RQGKKN-AYIIEAVLMGKISHNNQD----------FFLSLGKDNNWY------IASVSDI 659
Query: 591 GFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP-VL 649
+ + G P ++ L + E + G C G + + S +P
Sbjct: 660 ----IDINSGKMPPNLVENIYLPEIENI--------SAGQLCA-GDAASEAISRLIPDYE 706
Query: 650 SSLSESDEVLHMSFEYHDAVENYKEQRT--KVARLKKKIARTEGFKEYKKIVDTVKFTEE 707
+ +E + + + + VEN +Q KV ++ + + + K+ + T++ +
Sbjct: 707 KEYTPINEEITLQEKRIEEVENLIKQNPLDKVEKIGQLMRNNRKRQNLKQELTTIQNQYQ 766
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 767
K+K + W+EFL + +++ E AL PLGE AA IRGE
Sbjct: 767 KVKSHSSYY--------------WQEFLALVDILREFGALKEFEPT--PLGEAAAVIRGE 810
Query: 768 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-- 825
NELWLA+ L + L L P LA +L+++ + W Y+PS V++ + +
Sbjct: 811 NELWLALALTSGHLDFLPPHHLAPAITALITDPPRFDTW----VAYQPSPQVLDALGLVK 866
Query: 826 ----------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 875
L E R + Q K + +P L+ G+ EAW G+TW E+ + LD
Sbjct: 867 IEDEYNPEEQLRETRRKLYQAQNKKDITMPVYLERDVIGLSEAWCLGVTWDELCSNTTLD 926
Query: 876 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
+GD+ R+LRRT+D+L QIP++P ++ RL A DA M R PI
Sbjct: 927 EGDIVRILRRTVDVLWQIPQVPGINSRLADTARDAFAKMKRFPI 970
>gi|147769115|emb|CAN76232.1| hypothetical protein VITISV_039406 [Vitis vinifera]
Length = 239
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/264 (72%), Positives = 213/264 (80%), Gaps = 25/264 (9%)
Query: 661 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 720
MS Y++AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D KFTEEKIKRLKARS RL+
Sbjct: 1 MSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLS 60
Query: 721 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 780
RIEQIEPSGWKEFL++ GE + L+MVLR+K+
Sbjct: 61 SRIEQIEPSGWKEFLQLQ------------------FGEKMNS-------GLSMVLRSKV 95
Query: 781 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 840
LL LKPAQLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LDE R+S L+LQEKH
Sbjct: 96 LLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKH 155
Query: 841 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD 900
V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQIPKLPD+D
Sbjct: 156 DVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDID 215
Query: 901 QRLQKNAVDASNVMDRPPISELAG 924
LQ NA+ ASNVMDRPPISELAG
Sbjct: 216 PLLQSNAMTASNVMDRPPISELAG 239
>gi|126660004|ref|ZP_01731126.1| antiviral protein [Cyanothece sp. CCY0110]
gi|126618682|gb|EAZ89429.1| antiviral protein [Cyanothece sp. CCY0110]
Length = 970
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 306/1002 (30%), Positives = 449/1002 (44%), Gaps = 237/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+S+ RGTVWEE IIYCP +Q++ LSA
Sbjct: 121 FRNMLYETPIGQVGT--SLENVATVILDECHYISNRGRGTVWEESIIYCPPTIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N +EL WI ++ ELI S RPVPL +YFS K L PLL++
Sbjct: 179 TIGNPEELTDWINEVRKTAPHVEAEETAISLCELINSDFRPVPLRFYFSQKNGLYPLLNQ 238
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+ +N +L + ++
Sbjct: 239 QQTALNPRLK-----------------------------------------PKGNRKKRR 257
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD-----------------AAVQY-- 210
I+RS+ P + + L +D+LPAI+ IF+RR CD A+QY
Sbjct: 258 RIKRSECPTPMMVVTQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNL 317
Query: 211 -----LEDCNLLDE------CEMSEVELALKRF-------RILYP--------------- 237
E+ NL + E + LK F L+P
Sbjct: 318 LTFFLAENPNLQETLLKAVATENPPLHDPLKDFLNTLSAQSRLFPYLAEDEDSKIHLFGI 377
Query: 238 -----DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
VR ++ L +G+AAHHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMP
Sbjct: 378 LADLCQLVRGEQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAGINMP 437
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
ART V+S+LSKR +G LT +E Q+AGRAGRRG+D GHVV +QTP+EGA E L
Sbjct: 438 ARTTVISALSKRNDTGHSMLTPSEFLQIAGRAGRRGMDEVGHVVAIQTPFEGATEAAYLA 497
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
A EPL S FT SYGMVLNLL +++EA+ L+E+SF Y
Sbjct: 498 TAESEPLRSCFTPSYGMVLNLL-------------------QKHTIKEAKDLLERSFAEY 538
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + + + + E L E+ L E E L LK EKR
Sbjct: 539 LAQLKLEPEQQAIANLSTELAKLDIELGG----------LQEKDIIEYEKLNARLKEEKR 588
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYL-GKFDSLDS 531
L + E KR + L G L VYL GK +
Sbjct: 589 LLKILEDQAEEKRKKEISGQLGQLNIGDL-------------------VYLKGKRLRTST 629
Query: 532 SKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIG 591
+L + + + +G +D + LG +N WY I Y
Sbjct: 630 PQLAVIVA---------MVPGSGQSFD--------LLCLGDNNYWYLVKRGDIVDFYGAS 672
Query: 592 FPNVALAQGDALPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWSWSL 644
P ++L LP + L L +G + + ++++D FG + E
Sbjct: 673 LP-LSLIDPLVLP-DLRRLSLGRGPKGDETSKEITKQISDRAFGRITPPE---------- 720
Query: 645 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 704
V+ D+V D + N+ T+G +++K+++ +
Sbjct: 721 ---VIEQQKRIDQV-------QDLLNNH--------------PLTKG-RDFKRLLKSHHR 755
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
E ++L R + K ++ + W+EFL + ++ E ALD T LG+ AA +
Sbjct: 756 RLELREQLHNRQIKFQK-LQSNQSYYWQEFLNLIEILREFNALDHYTPT--NLGKAAATM 812
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
RGENELWL +V + IL L+P QLAA +++++E ++ W N Y PS V+ +
Sbjct: 813 RGENELWLGLVFMSGILNHLEPHQLAAAVSAIITETLRPDTWTN----YLPSPEVLKLFR 868
Query: 825 VLDEHRSSFLEL-------QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
E S E+ Q ++ + IP L+ + G+VE WA G W+E+ + +LD+G
Sbjct: 869 ESPEQGVSIGEMRRLLNQTQRRYQITIPVWLELELIGLVEQWALGGDWQELCENTSLDEG 928
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
DL RLLRRTIDLL QIP+ P + L A +A ++ R PI
Sbjct: 929 DLVRLLRRTIDLLWQIPQTPGISNYLAGTAKEAIVLLKRFPI 970
>gi|67920852|ref|ZP_00514371.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|67856969|gb|EAM52209.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
Length = 970
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 306/1005 (30%), Positives = 452/1005 (44%), Gaps = 243/1005 (24%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+S+ RGTVWEE IIYC +Q++ LSA
Sbjct: 121 FRNMLYETPIGQVGT--SLENVATVILDECHYISNRGRGTVWEESIIYCSPSIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N+++L WI Q+ +LI S RPVPL +YFS K L PLL++
Sbjct: 179 TIGNSEDLTKWINQVRKTAPNFDPDKTSISLCKLINSDFRPVPLRFYFSQKNGLYPLLNQ 238
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+ +N +L + ++
Sbjct: 239 QQTGLNNRLK-----------------------------------------PKGNRKKRR 257
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL------------------ 211
++RS+ P + + L +D+LPAI+ IF+RR CD AVQ L
Sbjct: 258 RVKRSECPTPMMVIQQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNL 317
Query: 212 ------EDCNL-----------------------------------LDECEMSEVELALK 230
E+ NL L E E S+V L
Sbjct: 318 LTFFLGENTNLQVSLLEAVATENPPLYEPLKDFLSTLSPQSNLFTYLGEDEESKVHL--- 374
Query: 231 RFRIL--YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
F IL VR ++ L +G+AAHHAG LP+WK +E+LF+ GLVKVVFAT TL+AG
Sbjct: 375 -FEILANLCQLVRSEQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAG 433
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART V+S+LSKR +G L +E Q+AGRAGRRG+D GHVV +QTP+EGA E
Sbjct: 434 INMPARTTVISALSKRIDTGHSMLNPSEFLQIAGRAGRRGMDEVGHVVTIQTPFEGATEA 493
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L A EPL S FT SYGMVLNLL SL EA+ L+E+S
Sbjct: 494 AYLATAESEPLKSCFTPSYGMVLNLL-------------------QKHSLREAKDLLERS 534
Query: 409 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
F Y+ A+ +L Q+ L++E++ I+ + AY++ L+ LK
Sbjct: 535 FAEYL-------AQLKLEPEQQAIASLSTELAKLDIELGGLQEKDILAYEK---LKARLK 584
Query: 469 AEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDS 528
EKR L + + KR + L G L VY
Sbjct: 585 EEKRLLKVLEAQAQEKRKKEIAGQLSKLNIGDL-------------------VY------ 619
Query: 529 LDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY 588
L +LK SI + + +G +D + LG +N WY I Y
Sbjct: 620 LKGKRLKT--SIPQLATIVAMVPGSGQGFD--------LLCLGDNNYWYLVKRGDIVDFY 669
Query: 589 RIGFPNVALAQGDALPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWS 641
P ++ A LP + L L +G + ++++D FG + E
Sbjct: 670 GASLP-LSFADNLTLP-DLRRLSLGRGPKGDENSRQITQQMSDRAFGRITPPE------- 720
Query: 642 WSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDT 701
V+ D V + + H ++ K++K++ +
Sbjct: 721 ------VIEQQQRIDHVQTL-LDDHPLTQS---------------------KDFKRLFKS 752
Query: 702 VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETA 761
E ++L R + K ++ + W+EFL + ++ E +ALD T LGE A
Sbjct: 753 HHRRLELREQLHNRQIKFQK-LQSNQSYYWQEFLNLIEILREFKALDNYTPTA--LGEAA 809
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A +RGEN+LWL MVL + L L+ QLAA +++++E ++ W N Y PS V++
Sbjct: 810 ATMRGENQLWLGMVLMSSTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLS 865
Query: 822 VIN-------VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
+ + E R + Q ++ V IP L+ + G+VE WA G W+E+ + +L
Sbjct: 866 LFQESPEDGVSIGEMRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSL 925
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
D+GDL RLLRRT+D+L QIP+ P + L A +A ++ R PI
Sbjct: 926 DEGDLVRLLRRTVDILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|416379953|ref|ZP_11684012.1| Helicase [Crocosphaera watsonii WH 0003]
gi|357265757|gb|EHJ14478.1| Helicase [Crocosphaera watsonii WH 0003]
Length = 970
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 304/1005 (30%), Positives = 453/1005 (45%), Gaps = 243/1005 (24%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+S+ RGTVWEE IIYC +Q++ LSA
Sbjct: 121 FRNMLYETPIGQVGT--SLENVATVILDECHYISNRGRGTVWEESIIYCSPSIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N ++L WI Q+ +LI S RPVPL +YFS K L PLL++
Sbjct: 179 TIGNPEDLTKWINQVRKTAPNFDPDKTSISLCKLINSDFRPVPLRFYFSQKNGLYPLLNQ 238
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+ +N +L + ++
Sbjct: 239 QQTALNNRLK-----------------------------------------PKGNRKKRR 257
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL------------------ 211
++RS+ P + + L +D+LPAI+ IF+RR CD AVQ L
Sbjct: 258 RVKRSECPTPMMVIQQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNL 317
Query: 212 ------EDCNL-----------------------------------LDECEMSEVELALK 230
E+ NL L E E S+V L
Sbjct: 318 LTFFLGENTNLQVSLLEAVATENPPLYEPLKDFLSTLSPQSNLFTYLGEDEESKVHL--- 374
Query: 231 RFRIL--YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
F IL VR ++ L +G+AAHHAG LP+WK +E+LF+ GLVKVVFAT TL+AG
Sbjct: 375 -FEILANLCQLVRSEQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAG 433
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART V+S+LSKR +G L +E Q+AGRAGRRG+D GHVV +QTP+EGA E
Sbjct: 434 INMPARTTVISALSKRIDTGHSMLNPSEFLQIAGRAGRRGMDEVGHVVTIQTPFEGATEA 493
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L A EPL S FT SYGMVLNLL SL EA+ L+E+S
Sbjct: 494 AYLATAESEPLKSCFTPSYGMVLNLL-------------------QKHSLREAKDLLERS 534
Query: 409 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
F Y+ A+ +L Q+ L++E++ I+ + AY++ L+ LK
Sbjct: 535 FAEYL-------AQLKLEPEQQAIASLSTELAKLDIELGGLQEKDILAYEK---LKARLK 584
Query: 469 AEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDS 528
EKR L + + KR + L G L +L + + S+P
Sbjct: 585 EEKRLLKVLEAQAQEKRKKEIAGQLSKLNIGDLVYL-----KGKRLRTSIP--------- 630
Query: 529 LDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY 588
+A+I + +G +D + LG +N WY I Y
Sbjct: 631 -------QLATI------VAMVPGSGQGFD--------LLCLGDNNYWYLVKRGDIVDFY 669
Query: 589 RIGFPNVALAQGDALPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWS 641
P ++ A LP + L L +G + ++++D FG + E
Sbjct: 670 GASLP-LSFADNLTLP-DLRRLSLGRGPKGDENSRQITQQMSDRAFGRITPPE------- 720
Query: 642 WSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDT 701
V+ D V + + H ++ K++K++ +
Sbjct: 721 ------VIEQQQRIDHVQTL-LDDHPLTQS---------------------KDFKRLFKS 752
Query: 702 VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETA 761
E ++L R + K ++ + W+EFL + ++ E +ALD T LGE A
Sbjct: 753 HHRRLELREQLHNRQIKFQK-LQSNQSYYWQEFLNLIEILREFKALDNYTPTA--LGEAA 809
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A +RGEN+LWL MVL + L L+ QLAA +++++E ++ W N Y PS V++
Sbjct: 810 ATMRGENQLWLGMVLMSGTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLS 865
Query: 822 VIN-------VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
+ + E R + Q ++ V IP L+ + G+VE WA G W+E+ + +L
Sbjct: 866 LFQESPEDGVSIGEMRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSL 925
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
D+GDL RLLRRT+D+L QIP+ P + L A +A ++ R PI
Sbjct: 926 DEGDLVRLLRRTVDILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|443322322|ref|ZP_21051347.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
gi|442787927|gb|ELR97635.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
Length = 1002
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 320/998 (32%), Positives = 465/998 (46%), Gaps = 192/998 (19%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +VLDE HY+SD RGTVWEE IIYC E+Q++ LSA
Sbjct: 116 FRNMLYETPIGQVGT--SLEDVESVVLDECHYISDPQRGTVWEESIIYCSTEIQLVALSA 173
Query: 63 TVANADELAGWIGQIH------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 116
T+ N +EL WI + K +LI S RPVPL +YFST L PLL++K +N
Sbjct: 174 TIGNPEELTDWINSVRTNQDPPNKCQLINSDFRPVPLRYYFSTVDGLFPLLNQKQNQINS 233
Query: 117 KL-------SLNYL-------------QLSTSEVKP-YKDGGSRRRNSRKHADMNSNNIV 155
KL + N L QLS +E+ P SRR + + S N+V
Sbjct: 234 KLKAKSSKKTRNRLRKEDCPSIFQVINQLSQAEMLPAIYIIFSRRGCEQAMQTLASLNLV 293
Query: 156 TS---------------FGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRDMLPAIWFI 198
S GQ L N + R Q +I L + L
Sbjct: 294 NSSEEQQIYLTLLRFLLLGQSDLRVNFGDFTGRDPELQEKLIVDLGNFGPEPELQEKLLS 353
Query: 199 FNRRGCDAAV---QYLE-DCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGLLKGVA 253
F +A + QYLE + NL + + VE + + R +YP LL+GVA
Sbjct: 354 FLANNPNAELELWQYLEKNPNLKQQILIFLVESSEVARIEQIYP----------LLRGVA 403
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
+HHAG LP WK +E+LF+ GL+KVVFAT TLAAGINMPART V+S+LSKRT SG L+
Sbjct: 404 SHHAGLLPPWKELVEKLFELGLIKVVFATATLAAGINMPARTTVISALSKRTESGHSTLS 463
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
+E Q+AGRAGRRG D+ GHVV +QTP+EGAE+ +L A EPLVSQFT SYGMVLNL
Sbjct: 464 PSEFLQIAGRAGRRGKDSVGHVVTMQTPFEGAEDAARLATANPEPLVSQFTPSYGMVLNL 523
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
L SL E + L+E SF Y+ + +L ++
Sbjct: 524 LQK-------------------HSLSEIKDLLELSFAEYL-------EQLKLAPSSRKMG 557
Query: 434 VLTSEIS--DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKD 491
LTSE++ D + R + + L+E LK E+R L+ + + R
Sbjct: 558 ELTSELAQLDIKLAELERSGIGAKEIESYQKLKEHLKEEQRLLELLQHQAQTSR------ 611
Query: 492 ILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQ 551
+ + +P + G +L K KN+A + AL L
Sbjct: 612 -------------------KKAIAPELPELVPGNIIAL---KGKNIAFASPLTAL--LID 647
Query: 552 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 611
D+ + LG+DN WY T + V + G P +
Sbjct: 648 KIPGPGQAPDL-----LCLGADNYWYVATYGDV----------VDINPGFLAPEQI---- 688
Query: 612 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSE-SDEVLHMSFEYHDAVE 670
G++ LA + G C +G LSE + + + +
Sbjct: 689 ---GQLSLPDLATIKLGR--CGKGD--------------RLSEIVTQTMLKAIVPNLPTP 729
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
EQ+ +V ++ KI + K + +K ++++ + K + QI+ S
Sbjct: 730 EITEQQQRVDSVQDKI-DAHPLAQRKNPIQIIKNHKQRLLLREQLIKTQDQHQNQIKKSR 788
Query: 731 ----WKEFLRISNVIHETRALDINTQV---------------------IFPLGETAAAIR 765
W+EF+ + ++ E +AL+ + + I PLGE AA IR
Sbjct: 789 SSYYWREFIYLIQILLEFQALEEDLPINHPEEAVASIKREKEEDKCYRINPLGEAAALIR 848
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GENELWLA+ L + L P +LA+ ++L++E + W + EPS V+ +I
Sbjct: 849 GENELWLAIALTSGAFERLTPHELASAVSALITEPPRPDTWVD----CEPSPLVLQLIID 904
Query: 826 LDEHRSSFLELQEKHGVEI----PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
L E R ++Q K+ ++ P L+++ G+VE WA GL W E+ LD+GD+ R
Sbjct: 905 LKESRRRLNQVQGKYKAKLTKIPPVFLETELLGLVEQWALGLEWYELSDLTNLDEGDIVR 964
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
LLRRTID+L QIP++P++ L+ NA A ++ R PI
Sbjct: 965 LLRRTIDMLWQIPQIPEISSNLRDNANKAIALLKRFPI 1002
>gi|172037250|ref|YP_001803751.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|354553865|ref|ZP_08973171.1| DSH domain protein [Cyanothece sp. ATCC 51472]
gi|171698704|gb|ACB51685.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|353554582|gb|EHC23972.1| DSH domain protein [Cyanothece sp. ATCC 51472]
Length = 970
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 310/974 (31%), Positives = 448/974 (45%), Gaps = 181/974 (18%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 121 FRNMLYETPIGQVGT--SLENVATVILDECHYISDRGRGTVWEESIIYCPPTIQLVALSA 178
Query: 63 TVANADELAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N +EL WI Q+ ELI S RPVPL +YFS K L PLL+
Sbjct: 179 TIGNPEELTDWINQVRKTAPNVDPEQTTVSLCELINSDFRPVPLRFYFSQKNGLYPLLNR 238
Query: 110 -----------KGKHMNRKL---SLNYLQLSTSEVKPYKD-------GGSRRRNSRKHAD 148
KG RK S + E +KD SRR R
Sbjct: 239 KQTALNPRLKPKGNRQKRKRIKRSECPTPMMVVEQLDHKDLLPAIYVIFSRRECDRAVQK 298
Query: 149 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 208
+ +V+ H L N + + P + ++L S + P D
Sbjct: 299 LEGVVLVSPEEAHALQYNLLTFFL-GENPNLQESLLKAVSTENPPLY---------DPLK 348
Query: 209 QYLEDCNLLDECEM-----SEVELALKRFRILYP--DAVREPAIKGLLKGVAAHHAGCLP 261
+L NL + E+ ++ + + F+IL VR ++ L +G+AAHHAG LP
Sbjct: 349 DFL--SNLSPQSELFPYLAADEDSKIHLFQILADLCQLVRGEQLEPLTRGIAAHHAGILP 406
Query: 262 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 321
+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LSKRT +G LT +E Q+A
Sbjct: 407 LWKELVEQLFEVGLVKVVFATATLSAGINMPARTTVISALSKRTDTGHSMLTPSEFLQIA 466
Query: 322 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 381
GRAGRRG+D G+VV +QTP+EGA E L A EPL S FT SYGMVLNLL
Sbjct: 467 GRAGRRGMDEVGYVVTIQTPFEGATEAAYLATAESEPLRSCFTPSYGMVLNLL------- 519
Query: 382 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 441
+++EA+ L+E+SF Y+ + + + + E L E+
Sbjct: 520 ------------QKHTIQEAKDLLERSFAEYLAQLKLEPEQQAIADLSTELAKLDIELGG 567
Query: 442 DAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
L E E L LK EKR L + E KR + L G L
Sbjct: 568 ----------LQEKDILEYEKLNARLKEEKRLIKILEDQAEEKRKKEISGQLGRLNIGDL 617
Query: 502 PFLCLQYKDSEGVEHSVPAVYL-GKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 560
VYL GK S +L + + + +G +D
Sbjct: 618 -------------------VYLKGKRLRTASPQLAVIVA---------MVPGSGQSFD-- 647
Query: 561 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR-ETMSLLLDKG---- 615
+ LG +N WY I Y P L+ D LPR + L L +G
Sbjct: 648 ------LLCLGDNNYWYLVKRGDIVDFYGASLP---LSLIDNLPRPDQRRLSLGRGPKGD 698
Query: 616 ---EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENY 672
+ + ++++D FG + +P + VE
Sbjct: 699 ETSKTITQQISDRAFGRI---------------IP------------------PEVVEQQ 725
Query: 673 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 732
K + V L T+G +E+K+++ + E ++L R + K ++ + W+
Sbjct: 726 K-RIDHVQGLLNNHPLTKG-REFKRLLKSHHQRLELREQLHNRQIKFQK-LQSNQSYYWQ 782
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
EFL + +++ E ALD T LG+ AA +RGENELWL +V + IL L+P QLAA
Sbjct: 783 EFLNLIDILREFDALDDYTPT--KLGKAAATMRGENELWLGLVFMSGILNPLEPHQLAAA 840
Query: 793 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL-------QEKHGVEIP 845
+++++E ++ W N Y PS V+ + E S E+ Q ++ + IP
Sbjct: 841 VSAIITETLRPDTWTN----YLPSPEVLRLFRESPEQGVSIGEMRRLLNQTQRRYQITIP 896
Query: 846 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 905
L+ + G+VE WA G W+E+ + +LD+GDL RLLRRTIDLL QIP+ P + L
Sbjct: 897 VWLELELIGLVEQWALGGDWQELCENTSLDEGDLVRLLRRTIDLLWQIPQTPGISNYLAA 956
Query: 906 NAVDASNVMDRPPI 919
A +A ++ R PI
Sbjct: 957 TAKEAIVLLKRFPI 970
>gi|428769820|ref|YP_007161610.1| DSH domain-containing protein [Cyanobacterium aponinum PCC 10605]
gi|428684099|gb|AFZ53566.1| DSH domain protein [Cyanobacterium aponinum PCC 10605]
Length = 974
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 318/988 (32%), Positives = 452/988 (45%), Gaps = 203/988 (20%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++S +G V + + DV +VLDE HY+SD+SRGTVWEE IIYCP +Q++ LSA
Sbjct: 119 FRNMLYSTPIGEVGT--SVQDVQTVVLDECHYISDMSRGTVWEESIIYCPSHIQLVALSA 176
Query: 63 TVANADELAGWIGQI------HGKTE---LITSSRRPVPLTWYFSTKTALLPLLDEKGKH 113
T+ N ++L WI + GK L+ S RPVPL +YFS L PL EK
Sbjct: 177 TIGNPEDLCRWINSVRKANLQQGKVSECVLVNSDFRPVPLKFYFSHSRGLFPLFSEKN-- 234
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
++ L LN S++K R R S++ + IV + + R
Sbjct: 235 -SQNLKLN------SQLKRLLATNKRGRFSQRDCP-SIKTIVQQLSNNNMLPAIYIIFSR 286
Query: 174 SQVPQVIDTLWHL------RSRDML-------------------------------PAIW 196
Q +++L +L SR +L I
Sbjct: 287 RGCDQAVESLSYLNLVTVEESRKILLYLLYFLMIENLELQAKIIEFAKKEHEIAYNKIID 346
Query: 197 FIFNRR-GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255
FI N + +A V YL D + E L RF + + R I+ L +G+A+H
Sbjct: 347 FIANEKEAGEALVDYLIDKPIFKE--------RLLRFLAEHSEVARTNQIEPLTRGIASH 398
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP WK +E LF+ GLVK+VFAT TLAAGINMPART V+S+L KR+ G LT +
Sbjct: 399 HAGILPAWKELVERLFELGLVKIVFATATLAAGINMPARTTVISALKKRSDDGHRLLTPS 458
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+AGRAGRRG+D G+VV VQTP+EGA KL A EPL SQFT SYGMVLNLL
Sbjct: 459 EFLQIAGRAGRRGMDKVGYVVTVQTPFEGALVASKLAKATPEPLRSQFTPSYGMVLNLL- 517
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 435
S+EEA++L+E SF Y+ + +D +
Sbjct: 518 ------------------QKHSIEEAKELLELSFAEYLAEIQLSPQEDAIAS-------Y 552
Query: 436 TSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKD 495
T+EI+ I L+E KE+A E+LK RR+ E K +LK
Sbjct: 553 TTEITRLDIS------LAEFNSKEIAAY-EKLKE--------RRKQE-------KKVLKL 590
Query: 496 FENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGD 555
FE LQ K L + + L + SI D L+R + N
Sbjct: 591 FERN-----WLQQKQKS---------ILPQLEDL------KIGSILD---LSRHHKKNA- 626
Query: 556 DYDTQDVKPSYYV--------ALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
Y+TQ V +Y V LG DN WY + F +V +P
Sbjct: 627 -YETQGVFVNYVVNGNQRFLLCLGKDNNWYLAS-----------FTDVVDINSGRIP--- 671
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
+ L EKL E + E + +N SL+ S + + E D
Sbjct: 672 --------DSLIEKLYLPE---------TPEIRAGMINSGDEQSLTVSQLIAEYAQESVD 714
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
E Q ++ ++ IA + + I VK K ++LK R+ + ++ +
Sbjct: 715 KSEEIIYQIQRIEEVEAAIA-SHPLDKIDNINQIVK-NNRKRQQLKQELSRIQSQYQRYK 772
Query: 728 PSG---WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDL 784
+ W+EFL + ++ E AL+ PLG AA IRGENELWL + L + L L
Sbjct: 773 ANSSYYWQEFLALIEILREFGALEGYQPT--PLGIAAATIRGENELWLGLALTSHRLDYL 830
Query: 785 KPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-------------LDEHRS 831
P LA V +L +E ++ W + Y+PS V++ + V L E R
Sbjct: 831 TPHHLAGVITALTTESLRSDTWVS----YQPSPEVLDALGVQKMDDVSYSPESELWEIRR 886
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
+ Q + + +P L+ G+ EAW G +W E+ + LD+GD+ R+LRRT+D+L
Sbjct: 887 KLYQAQTRRDISMPVWLERDLIGLAEAWCLGASWEEICNNTTLDEGDIVRVLRRTVDVLV 946
Query: 892 QIPKLPDVDQRLQKNAVDASNVMDRPPI 919
QIP++P +D L + A +A+ M R PI
Sbjct: 947 QIPQVPSLDFSLIQTAKEAAKSMKRFPI 974
>gi|428312000|ref|YP_007122977.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
gi|428253612|gb|AFZ19571.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
Length = 901
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 211/523 (40%), Positives = 289/523 (55%), Gaps = 76/523 (14%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSA
Sbjct: 114 FRNMLYGTPIGEVGTS--LTGVEAVVLDECHYMNDRQRGTVWEESIIYCPPEVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVANAD+L W+ +HG TELI S RPVPL +YF + PLLDE ++ +L
Sbjct: 172 TVANADQLTEWLNLVHGATELIYSDFRPVPLQFYFGNTKGVFPLLDETQTRISPRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
KP GG +R R + P +
Sbjct: 228 --------KPKNKGGKQRGG------------------------------RPESPHMTYI 249
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L +RDMLPAI+FIF+RRGCD AV+ + D +L++E E ++++ + F P+A R
Sbjct: 250 LEQLAARDMLPAIYFIFSRRGCDRAVEEMGDFSLVNEQETAQLKEKIDEFLSRNPEAGRA 309
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L +G+AAHHAG LP WK +EELFQ GL+KVVFATETLAAGINMPART V+S+LS
Sbjct: 310 GQVEPLYRGIAAHHAGILPAWKGLVEELFQMGLIKVVFATETLAAGINMPARTTVISTLS 369
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G LT++E QMAGRAGRRG+D G+VV +QTP+EGA+E L AG +PLVSQ
Sbjct: 370 KRTDRGHRLLTASEFLQMAGRAGRRGMDAIGYVVTLQTPFEGAKEAAYLATAGADPLVSQ 429
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F+ +YGMVLNLL S+ EA+ LVE+SF Y+ + + +
Sbjct: 430 FSPTYGMVLNLL-------------------QTHSVSEAKDLVERSFAQYLATLYLRPQQ 470
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ E L +++ + + R L E LK E+R L + E
Sbjct: 471 QAITELTTELTKLDIQLAPIEVKQLER----------YEKLSERLKEERRLLKLLENQAE 520
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 525
R + +LKD G + +L ++ V VPAV + K
Sbjct: 521 AVRAQEIAQVLKDAPPGTILYLKGKHVK---VSSPVPAVLVTK 560
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 111/200 (55%), Gaps = 14/200 (7%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+EFL + V+ LD T PLG+ AAIRG+NELWL + L + L P LA
Sbjct: 706 WQEFLNLIEVLRAFGCLDNVTPT--PLGKATAAIRGDNELWLGLALMSGEFDHLDPHHLA 763
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
+LV+E + W N Y P I + L R S L+LQ ++ + P +
Sbjct: 764 GAMCALVTETPRPDSWTN----YLPPEPAIEALVHLKGTRQSLLKLQYRYDISWPIWPEY 819
Query: 851 QF--------SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
+F G+VE WA G++W ++ + +LD+GD+ R+LRRT+D+L+QIP +P V
Sbjct: 820 KFLDKIVGGLMGLVEQWALGISWTDLCANTSLDEGDVVRILRRTVDILSQIPHVPAVPNS 879
Query: 903 LQKNAVDASNVMDRPPISEL 922
L+ NA+ A ++DR P++E+
Sbjct: 880 LRANAIRAIQLLDRFPVNEV 899
>gi|170078848|ref|YP_001735486.1| DEAD/DEAH box helicase [Synechococcus sp. PCC 7002]
gi|169886517|gb|ACB00231.1| DEAD/DEAH box helicase protein [Synechococcus sp. PCC 7002]
Length = 957
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 302/1002 (30%), Positives = 451/1002 (45%), Gaps = 236/1002 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V +VLDE HY+SD RGTVWEE IIYCP E+QI+ LSA
Sbjct: 107 FRNMLYETPIGQVGT--SLENVLTVVLDECHYISDRGRGTVWEESIIYCPSEIQIVGLSA 164
Query: 63 TVANADELAGWIGQI------------HGKTELITSSRRPVPLTWYFSTKTALLPLLDEK 110
T+ N + WI + + EL+ S RPVPL + +S K L PLLD+
Sbjct: 165 TIGNPEIFTAWINKTRQAAHEDHPNSKEHRCELVDSDHRPVPLEFLYSNKKGLYPLLDQG 224
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
G+ MN +L + + +R R+ D
Sbjct: 225 GEKMNTRL------------RSRTNAPQGKRKKRQRED---------------------- 250
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 230
P + + LR +D+LPAI+ IF+RRGCD +V L D L+ E +E L
Sbjct: 251 -----CPSLFAIVRQLRQKDLLPAIYIIFSRRGCDRSVTQLNDITLVSPEEAKLLEATLL 305
Query: 231 RFRILYPDAVRE---------PAIKGLLKGVAAHHAGC-----------LPIWKSFIEEL 270
F + ++E P K L+ A + LP+ + + L
Sbjct: 306 HFFLDNQGKLQEKLLNQCDDTPEFKALVLDFIAKNPFSTEKLVDYLQENLPLREQLWQYL 365
Query: 271 FQ--------------RG--------------LVKVVF---------ATETLAAGINMPA 293
Q RG LV+ +F AT TLAAGINMPA
Sbjct: 366 AQQSKFARPEQVEPLLRGIAAHHAGILPAWKELVEKLFEMGLVKLVFATATLAAGINMPA 425
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E QMAGRAGRRG+D G+VV V+TP+EGA+E +L
Sbjct: 426 RTTVISALSKRTDEGHRMLTPSEFLQMAGRAGRRGMDKVGYVVTVETPFEGAKEASRLAL 485
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
+ EPL S FT SYGMVLNLL SLEE+++L+ +SF Y
Sbjct: 486 SSAEPLRSWFTPSYGMVLNLL-------------------QKHSLEESKELLSRSFAEY- 525
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
+ +L Q+ LT+EI+ ID + E ++ + L+E LK E+R
Sbjct: 526 ------QVQQQLSPEQEAIAELTTEIARLDIDLAA---FDERQFERYSKLKERLKEEERL 576
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 533
LR + EL+ L +L G + L L+ K+ V+ +VPAV +
Sbjct: 577 LGILREQAELENRKLLAPLLDQLPLGSI--LHLKGKNLR-VKEAVPAVLV---------- 623
Query: 534 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 593
+ + ++ LG+D WY E + + FP
Sbjct: 624 --------------------------EQTEEQQFLCLGTDKRWYLIKETDVVALNEGLFP 657
Query: 594 NVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPV---LS 650
LAQ + L +D+ L + G ++ ++ L + L
Sbjct: 658 ADQLAQ--------IPLPIDQNLTLGKN-------------GKIDAEAFPLVAAIADYLL 696
Query: 651 SLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYK--KIVDTVKFTEEK 708
L+E+ EV + Q+ A ++ K A + ++ K K++ + ++
Sbjct: 697 PLTEAPEV--------------EAQKQCFAAVQAKFAASPLSQQDKPGKLLKRHQRRKDL 742
Query: 709 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768
K L R + L ++ W++FL + V+ E RALD T + LG TAA IRGEN
Sbjct: 743 RKELN-RRQTLYRQHANKRSYYWQDFLNLIEVLQEFRALDGYTPTV--LGRTAATIRGEN 799
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV--- 825
ELWLA+ L + L L P LAA +++SE + W + Y V+ V+ +
Sbjct: 800 ELWLALCLLSGQLDHLAPEHLAAAICAIISEPPRGDSWTD----YSQPNAVLEVLGIRKK 855
Query: 826 --------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
L E R ++Q+ GV +P L+S+F G+VE WA G+ W E+ + +LD+G
Sbjct: 856 DQGHNPVSLWELRRQLYQVQKHCGVTMPVWLESKFIGLVEQWALGVEWTELCENTSLDEG 915
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
D+ R+LRRT+D+L QIP++P++ L + A +A M R P+
Sbjct: 916 DIVRMLRRTVDVLWQIPQIPEIKPVLMRTAKEAIAKMKRFPV 957
>gi|428221054|ref|YP_007105224.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
gi|427994394|gb|AFY73089.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
Length = 877
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/443 (43%), Positives = 264/443 (59%), Gaps = 59/443 (13%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+V+VLDE HY++D +RGTVWEE IIYCP ++Q++ LSA
Sbjct: 108 FRNMLYGTPIGEVGT--SLTGVEVVVLDECHYMNDRARGTVWEESIIYCPPDIQLVALSA 165
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+ +L WI ++HG TELI S RPVPL ++F+ L PLLD GK +N +L
Sbjct: 166 TVANSAQLTDWISKVHGVTELIYSDYRPVPLQFHFANPKGLFPLLDNSGKKINPRL---- 221
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R N R L K++ R + P +
Sbjct: 222 -----------------RGNPRN-----------------LKKDANGKPPRYESPSLPFV 247
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ RDMLPAI FIF+R+GCD A+ L+ +L++E E +++ + F P+ R
Sbjct: 248 ISQLQQRDMLPAIHFIFSRKGCDQAIGQLDKMSLVNESEAYQLKTQIDAFLEANPEVGRS 307
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+A+HHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 308 QYISSLYRGIASHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLS 367
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G LT++E QMAGRAGRRG+D G+VV VQ+PYEGA++ L A +PLVSQ
Sbjct: 368 KRTDRGHRLLTASEFLQMAGRAGRRGMDAVGYVVTVQSPYEGAKDAAYLATAQADPLVSQ 427
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL S++E R+LVE+SFG Y+ M +
Sbjct: 428 FTPSYGMVLNLL-------------------QTHSIDEVRELVERSFGQYLAGLAMEPQQ 468
Query: 423 DELCKIQKETDVLTSEISDDAID 445
+ + ++ E ++L ++++ +D
Sbjct: 469 ESIQELADEVELLETQLASIDLD 491
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIR 765
K+++LK + + + Q + W+EF + ++ L Q + P G+ AA++R
Sbjct: 668 KLEQLKEKLEYQRGVLSQKQQHHWQEFSSLVTILQSFGCL----QGVEPTAAGQVAASLR 723
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
G+NELWLA+ + L +L P LA CA+LV+E + ++ + S V ++
Sbjct: 724 GDNELWLALAFLSGELDNLDPHHLATACAALVTENSR----PDSRVNFTISPLVEESLSG 779
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
L R ++Q++H V IP L+ G++E WA G++W E+ + +LD+GD+ R+ RR
Sbjct: 780 LRGLRRQLFQIQKRHNVAIPIWLEYDLVGLIEQWALGMSWTELCANTSLDEGDIVRIARR 839
Query: 886 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
T+DLL+QIP +P + + +++NA A ++DR P++E+
Sbjct: 840 TLDLLSQIPHIPHLPETIRQNAYRAMQLIDRFPVNEV 876
>gi|81300133|ref|YP_400341.1| DEAD/DEAH box helicase-like protein [Synechococcus elongatus PCC
7942]
gi|81169014|gb|ABB57354.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
Length = 919
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/480 (41%), Positives = 270/480 (56%), Gaps = 68/480 (14%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + + DV+ +VLDE HY++D RGTVWEE IIYCP VQ++ LSA
Sbjct: 133 FRNMLYGTRIGEVGTS--MIDVETVVLDECHYMNDQQRGTVWEESIIYCPPTVQLVALSA 190
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN +L WI Q+HG T+LI S RP+PL + F L PLLDE GK ++ +
Sbjct: 191 TVANGGQLTDWIDQVHGPTDLIYSDYRPIPLAFSFCGNNGLFPLLDETGKSIHPSFKV-- 248
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
RR+ D I ++P +
Sbjct: 249 ----------------RRKTKGAKHDRKGREI-------------------PEIPSLGFV 273
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ R MLPAI+FIF+RRGCD AV+ L +L++ E + ++ + F P+A R
Sbjct: 274 VGQLQQRQMLPAIYFIFSRRGCDKAVRDLGPISLVNADEAARLKQRVNAFLAQSPEAARS 333
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ LL+G+A+HHAG LP WK IEELFQ GLVKVVFATETLAAGINMPART V++SLS
Sbjct: 334 GHVEPLLRGIASHHAGVLPAWKGLIEELFQEGLVKVVFATETLAAGINMPARTTVIASLS 393
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L +E QM+GRAGRRG+D++G+VV VQ+ +EG++E L G +PLVSQ
Sbjct: 394 KRTDSGHRLLLPSEFLQMSGRAGRRGLDDQGYVVTVQSRFEGSQEAAHLATVGPDPLVSQ 453
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL SLEEA++LVE+SFG Y+ S + +
Sbjct: 454 FTPSYGMVLNLL-------------------QKHSLEEAKELVERSFGRYLASLSLKPEQ 494
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+++ I E D L +E++D + A E L LK EKR L + E
Sbjct: 495 EKIAAIAAERDRLQAELAD----------VDFATLAEYDKLYGRLKEEKRLLKILHEQAE 544
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 710 KRLKARSKRLTK----------RIEQIEPSGWKEFLRISNVIHETRAL-DINTQVIFPLG 758
KRL R ++L R+E++ W+EFL + +++ L D+ +G
Sbjct: 699 KRLHKRQQQLQALEDEIGDRRARLEKLGQRHWQEFLSLMSILENFSCLEDLKPT---EMG 755
Query: 759 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 818
+ AA+RG+NELWL +VL + L L PA+ AA +LV+E + LW ++
Sbjct: 756 QNVAALRGDNELWLGLVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPA 811
Query: 819 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
V + + + R + Q + V P L+ +G+V+AWA G+ W E+ +LD+GD
Sbjct: 812 VEDALMGVRGLRRQLQQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGD 871
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
+ R+LRRTID LAQIP +P + ++ A A +++R P+ ++
Sbjct: 872 IVRVLRRTIDFLAQIPHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|56750238|ref|YP_170939.1| helicase [Synechococcus elongatus PCC 6301]
gi|56685197|dbj|BAD78419.1| putative helicase [Synechococcus elongatus PCC 6301]
Length = 919
Score = 355 bits (912), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 270/480 (56%), Gaps = 68/480 (14%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + + DV+ +VLDE HY++D RGTVWEE IIYCP VQ++ LSA
Sbjct: 133 FRNMLYGTRIGEVGTS--MIDVETVVLDECHYMNDQQRGTVWEESIIYCPPTVQLVALSA 190
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN +L WI Q+HG T+LI S RP+PL + F L PLLDE GK ++ +
Sbjct: 191 TVANGGQLTDWIDQVHGPTDLIYSDYRPIPLAFSFCGNNGLFPLLDETGKSIHPSFKV-- 248
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
RR+ D I ++P +
Sbjct: 249 ----------------RRKTKGAKHDRKGREI-------------------PEIPSLGFV 273
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ L+ R MLPAI+FIF+RRGCD AV+ L +L++ E + ++ + F P+A R
Sbjct: 274 VGQLQQRQMLPAIYFIFSRRGCDKAVRDLGPISLVNADEAARLKQRVNAFLAQSPEAARS 333
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ LL+G+A+HHAG LP WK IEELFQ GLVKVVFATETLAAGINMPART V++SLS
Sbjct: 334 GHVEPLLRGIASHHAGVLPAWKGLIEELFQEGLVKVVFATETLAAGINMPARTTVIASLS 393
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG L +E QM+GRAGRRG+D++G+VV VQ+ +EG++E L G +PLVSQ
Sbjct: 394 KRTDSGHRLLLPSEFLQMSGRAGRRGLDDQGYVVTVQSRFEGSQEAAHLATVGPDPLVSQ 453
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL SLEEA++LVE+SFG Y+ + + +
Sbjct: 454 FTPSYGMVLNLL-------------------QKHSLEEAKELVERSFGRYLATLSLKPEQ 494
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+++ I E D L +E++D + A E L LK EKR L + E
Sbjct: 495 EKIAAIAAERDRLQAELAD----------VDFATLAEYDKLYGRLKEEKRLLKILHEQAE 544
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 710 KRLKARSKRLTK----------RIEQIEPSGWKEFLRISNVIHETRAL-DINTQVIFPLG 758
KRL R ++L R+E++ W+EFL + +++ L D+ +G
Sbjct: 699 KRLHKRQQQLQALEDEIGDRRARLEKLGQRHWQEFLSLMSILENFSCLEDLKPT---EMG 755
Query: 759 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 818
+ AA+RG+NELWL +VL + L L PA+ AA +LV+E + LW ++
Sbjct: 756 QNVAALRGDNELWLGLVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPA 811
Query: 819 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
V + + + R + Q + V P L+ +G+V+AWA G+ W E+ +LD+GD
Sbjct: 812 VEDALMGVRGLRRQLQQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGD 871
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
+ R+LRRTID LAQIP +P + ++ A A +++R P+ ++
Sbjct: 872 IVRVLRRTIDFLAQIPHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|22297893|ref|NP_681140.1| hypothetical protein tlr0350 [Thermosynechococcus elongatus BP-1]
gi|22294071|dbj|BAC07902.1| tlr0350 [Thermosynechococcus elongatus BP-1]
Length = 889
Score = 355 bits (912), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 207/497 (41%), Positives = 281/497 (56%), Gaps = 74/497 (14%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+V+VLDE HY++D RGTVWEE IIYCPKE+Q++ LSA
Sbjct: 113 FRNMLYGTPIGEVGT--SLAGVEVVVLDECHYMNDRQRGTVWEESIIYCPKEIQLVALSA 170
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN ++L WI +HG ELI S RP+PL +YF L PLLD + K +N KL
Sbjct: 171 TIANGEQLTDWIQSVHGDAELIYSDWRPIPLHFYFCNGKGLFPLLDGQRKRLNPKL---- 226
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ RRR S++ D S V S
Sbjct: 227 ----------HGQPELRRRGSKR--DFLSIRYVVS------------------------- 249
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L+ RDMLPAI+FIF+RRGCD AVQ + NLL + E + ++ F + D V
Sbjct: 250 --QLQQRDMLPAIYFIFSRRGCDQAVQEVLGMNLLTKAEQQALAERVEAFLAQHQDIVAP 307
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP+ K+ +E LFQ GL+K+VFATETLAAGINMPART V+S+LS
Sbjct: 308 EMIAPLYQGIAAHHAGVLPVVKTLVETLFQEGLIKLVFATETLAAGINMPARTTVISTLS 367
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG LT++E QMAGRAGRRG+D GHVV +QTP+EGA E L A +PL+SQ
Sbjct: 368 KRTDSGHRLLTASEFLQMAGRAGRRGMDTVGHVVTLQTPFEGAHEAAFLATAAPDPLMSQ 427
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LEEAR+LVE+SFG Y+ + + +
Sbjct: 428 FTPSYGMVLNLL-------------------QRHTLEEARELVERSFGQYLATLQLTPQR 468
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ +++ E + ++ IDR+ A Y++ L+E L+ ++R L ++ E
Sbjct: 469 QAIAQLEMELQTVQQRLA--GIDRQQL-----AQYQK---LRERLRQDQRLLKILEQQAE 518
Query: 483 LKRFSALKDILKDFENG 499
+R AL ++ G
Sbjct: 519 QERTQALLPLMMAVPPG 535
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Query: 678 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 737
K+A L+ K+++ +G + V ++ + +RL+ + +++ Q W++FL +
Sbjct: 642 KIADLEAKLSQLQG--SLPQNVHSLLRLVRREERLQTELRDRQQKLHQQSQRHWEQFLAL 699
Query: 738 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
+ + L+ T PLGE AAA+RGENELWLA+ L + L DL P LAA A+LV
Sbjct: 700 IAALQDFGGLNDLTPT--PLGEMAAALRGENELWLALALASGELNDLPPHLLAAAVAALV 757
Query: 798 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 857
+E + W N Y + V + L R ++Q ++ + P + G+VE
Sbjct: 758 TETPRSDSWCN----YPIPSEVEERLAALSPIRRRLFQVQRRYQIIFPLWYEWDLIGLVE 813
Query: 858 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRP 917
WA G W E+ LD GD+ RLLRRT+D L+QIP P +L+++A A ++DR
Sbjct: 814 QWALGTPWHELCAQTNLDAGDIVRLLRRTLDFLSQIPHAPHTSPQLRQSAQQARYLLDRF 873
Query: 918 PISEL 922
P+++L
Sbjct: 874 PVNDL 878
>gi|303291135|ref|XP_003064854.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453880|gb|EEH51188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1584
Score = 355 bits (911), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 215/525 (40%), Positives = 283/525 (53%), Gaps = 79/525 (15%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GKT 81
V V++LDEVHYLSD SRGTVWEE IIY P VQ++CLSATV N D+LAGWI +H G T
Sbjct: 421 VGVVILDEVHYLSDASRGTVWEETIIYLPSAVQLLCLSATVGNPDDLAGWIEDVHCRGGT 480
Query: 82 --ELITSSRRPVPLTWYFSTKTA-----LLPLLDEKGKHMNRKL---------------- 118
E++ S RPVPLTW+FS K L PLL+ G ++ +L
Sbjct: 481 QCEVVQSDYRPVPLTWHFSMKPGHMYPGLGPLLNRAGTRLHHELFPFTKEGAREWANANG 540
Query: 119 SLNYLQLSTS---------EVKPYKDGGSRRRNSRKHADMNSNNIVTS------------ 157
Y S + Y +GG RRN+
Sbjct: 541 GDGYGSYGNSFDDRYGVGDDDDGYYEGGFFRRNNNDRGRGRGGGGGRGRRGSGGGGGGGR 600
Query: 158 -FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN- 215
F S + RR VP V T+ L + +MLPA+WF+F+R+GCD A +YL C
Sbjct: 601 RFPPPPPSPATDKQQRRRLVPHVETTVGQLVAGNMLPAVWFVFSRKGCDQAAEYLCRCGA 660
Query: 216 -LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 274
L+ E E+ L F PDA+R+ AI+ LL G+A+HHAG LP WK +E LFQRG
Sbjct: 661 KLVTPAEEREIAATLDAFARQNPDAIRDDAIEPLLLGIASHHAGLLPGWKGLVEGLFQRG 720
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
L+KVVFATETLAAG+NMPAR +VLS+LSKR +G LTSNE QM GRAGRRG D GH
Sbjct: 721 LLKVVFATETLAAGVNMPARCSVLSALSKRGDAGPRMLTSNEFMQMCGRAGRRGFDTIGH 780
Query: 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 394
VV Q+P+EG EE L+ + + L SQF+ SYGMVLNL ++A
Sbjct: 781 VVACQSPFEGPEEAFDLVTSPPDNLRSQFSISYGMVLNL------------------VRA 822
Query: 395 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 454
GR L R +VEQSFGNY+G EL +++++ D L +I ++ +
Sbjct: 823 GRPLPMVRSIVEQSFGNYLGGKAKREQTKELRRLKQQADALREQIE------MGESIVPQ 876
Query: 455 AAYKEMANLQEELKAEKRFRTELRR-----RMELKRFSALKDILK 494
++ L+E LK E+R + R + E+ R +A++D L+
Sbjct: 877 DEWRRYVKLEERLKEERRLMKIISRQSWDMKAEMAR-AAIRDFLE 920
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 749 INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN 808
++T + PLGE A +RGENELWL + L + + DL QLA V ++ ++ +
Sbjct: 1415 VDTLTLTPLGEVCATLRGENELWLGVALSDACVADLDEYQLAGVFGAICADANR-----P 1469
Query: 809 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREM 868
SS Y+PS + + L+ + + +Q + G+ L + + EAWASG TW ++
Sbjct: 1470 ASSSYDPSAKLRAALRNLEPIAAGVMTVQYEAGMSSSVTLSDGVAALCEAWASGATWDQI 1529
Query: 869 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 923
D LD+GD+AR+ RRT +LLAQ P+ ++ + ++K A A ++ RPPI++L+
Sbjct: 1530 RRDTNLDEGDIARVFRRTAELLAQAPRTRELPESVRKRAKAAEKLVLRPPITDLS 1584
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
F + + EQR KVA +++I + E ++ V EK+ L R RL KR
Sbjct: 1200 FGLDETLRFLTEQRAKVAATRREIDEMKNVAELRRAVKLNNRKREKLSTLDKRISRLEKR 1259
Query: 723 IEQIEPSGWKEFLRISNVIHETRAL 747
+ + +GW EFLR+ +++ E AL
Sbjct: 1260 VGEYAAAGWAEFLRVVDILVEMGAL 1284
>gi|428175293|gb|EKX44184.1| hypothetical protein GUITHDRAFT_109969 [Guillardia theta CCMP2712]
Length = 1170
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 293/952 (30%), Positives = 447/952 (46%), Gaps = 162/952 (17%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
+V ++LDE HY++D SRGTVWEE +I+ P E+ ++ LSAT+ N ++ W +HG T+
Sbjct: 176 EVHSVILDEFHYMNDESRGTVWEESVIHSPPEILLVALSATMKNVKDIRDWFAHVHGPTD 235
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYK-DGGSRR 140
LITS RPVPL + F + +L L D E K +L+ L + + P K GGS +
Sbjct: 236 LITSDFRPVPLQFKFIDRKGILNLFDNENNKKGQPRLNRLLLPSAAAAQDPRKKSGGSSK 295
Query: 141 ------RNSRKHADMNSNNI----------VTSFGQHQLSKNSINAIRRSQVPQVIDTLW 184
+NSR+ + ++ S +++P +
Sbjct: 296 FDGWNGKNSRRSYESGPRRRREGGGGGGEEFSTPSGEGSSGRKRGGGSYAEIPSYGFAVR 355
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN-----LLDECEMSEVELALKRFRILYPDA 239
L+ R+MLPAI FIF+R A ++ D N LL L L+ F + +
Sbjct: 356 QLQKREMLPAIIFIFSR-----AQRFANDSNWKVFELLAVIGSVTCSLLLQ-FVSQHKEV 409
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+E I+ L+G+A+HHAG +P+WK+ +EELFQ GL+KVVFATETLAAGINMPART V+S
Sbjct: 410 AQEDRIRLALRGIASHHAGLVPLWKALVEELFQDGLIKVVFATETLAAGINMPARTTVIS 469
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
SLSKRT+ G LTSNEL QM GRAGRRG D GH V++++ +EGA E L+ +PL
Sbjct: 470 SLSKRTSDGVTSLTSNELRQMCGRAGRRGKDTVGHSVIMRSKWEGAPEAFTLVMKDADPL 529
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS---- 415
S+F+ YGMVLNLL R ++E +K+VE+SFG+++ S
Sbjct: 530 RSKFSPKYGMVLNLL-------------------QDRPIQECKKIVERSFGSFLASIKRR 570
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
A+D ++Q D+L + + E+ + A L + LK E+R
Sbjct: 571 GKSDGAEDVEMEVQAAQDLLAT--------------VEESELQNFAKLTQRLKTEQRVLR 616
Query: 476 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 535
L ++ + + S +D L G P L KD+ D+ S +
Sbjct: 617 ILLQQAQERMNSVFEDTLPYCSPG-TPLLLTPRKDAT--------------DNRPESAVL 661
Query: 536 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 595
+ ++ P+Y+V L S N + T K I V P
Sbjct: 662 LGLLSDQLLDIS---------------TPNYFVCLTSTNDYRVVTPKDIVDVDLESEPVS 706
Query: 596 ALAQGDALPRETMSLLLDK-----------GEMLWEKLADSEFGGLWC-----MEGSLET 639
+ + A R ++ L+ K G+ L +A E + + SL T
Sbjct: 707 MVDEQGA--RVDVNELIAKISSRSAIKRASGDYLM--VAPRELAAIAARFLDRLLLSLPT 762
Query: 640 WSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIV 699
S+ L++PV+ EVL D V N+ E L + R E + YK I
Sbjct: 763 HSF-LSIPVVEEPKTPPEVLAQ----QDRV-NHVEALLTSHPLFAREDRKELLRAYKFIS 816
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D + RL+ ++ +T+ + LR + E D+ G+
Sbjct: 817 DQI-----ATGRLRQKATEVTRH----------DLLRDFGFLVENNVTDV--------GK 853
Query: 760 TAAAIRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY---EP 815
A++ +N LW+ V L N IL +L P +LAA + +VS+ N IY +
Sbjct: 854 LVASLNADNSLWVGSVLLYNDILYELGPHELAAALSCVVSD-------LNRPDIYIAFDA 906
Query: 816 STTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 875
S V + + + +S + Q +G+ LD F+G+VEAWA G +W ++ ++
Sbjct: 907 SPKVQDFVEQASDMQSRVIASQLANGLTFEVPLDPSFAGLVEAWALGTSWNSLLAMTSMQ 966
Query: 876 DGDLARLLRRTIDLLAQIPKLP------DVDQRLQKNAVDASNVMDRPPISE 921
+GD+ R+LRR +D+L QIP+LP V ++ NA A +MDR P+S+
Sbjct: 967 EGDVIRVLRRVLDILRQIPRLPYVPGERGVGAEIRLNARRALTLMDRFPVSD 1018
>gi|428213983|ref|YP_007087127.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
gi|428002364|gb|AFY83207.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
Length = 900
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 194/435 (44%), Positives = 254/435 (58%), Gaps = 68/435 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ S+G V + L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 114 FRNMLYGTSIGAVGT--SLHGVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVANA +L WI ++HG TELI S RPVPL +YF + L PLL + +N++L
Sbjct: 172 TVANAGQLTEWISEVHGPTELIYSDYRPVPLEYYFCSAKGLFPLLSKDQTKINQRL---- 227
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
K G R +SR P +I+
Sbjct: 228 ----------IKTPGKGRGSSRDE------------------------------PGLIEL 247
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L HL ++MLPAI+FIF+RR CD AV + D +L+ E +++ + F P+A R
Sbjct: 248 LTHLHEKNMLPAIYFIFSRRRCDDAVTQVSDLSLVSPKEAAQLHKRVHEFLAKNPEAERT 307
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ LL+G+AAHHAG LP WK +EELFQ GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 308 GQLQPLLRGIAAHHAGILPAWKGLVEELFQAGLIKVVFATETLAAGINMPARTTVISSLS 367
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G L ++E QM+GRAGRRG+D RG+VV VQT +EGA+E L G +PLVSQ
Sbjct: 368 KRTDDGHRLLKASEFLQMSGRAGRRGMDERGYVVTVQTRFEGAKEASYLATVGPDPLVSQ 427
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL +LEE ++LVE SFG Y+ + L +
Sbjct: 428 FTPTYGMVLNLL-------------------QTHTLEETKELVESSFGQYLAT---LHLQ 465
Query: 423 DELCKIQKETDVLTS 437
+L I K+T L S
Sbjct: 466 PKLQDISKQTQELAS 480
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 143/262 (54%), Gaps = 20/262 (7%)
Query: 674 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 733
EQ ++A L+ ++ + +Y VK + + KRL++ ++ +++ + W+E
Sbjct: 642 EQEGRIAALQAQL-KDHPLNQYGHPGTLVKHFK-RYKRLESDLSKVKNKLDSHLTAHWEE 699
Query: 734 FLRISNVIHETRAL-DINTQV-------------IFPLGETAAAIRGENELWLAMVLRNK 779
FL + N++ + L + TQ + LGE+AAAIRG+NELWL + L +
Sbjct: 700 FLDLINILQQVGCLRQLETQTDGDEDAIENLTFEVTSLGESAAAIRGDNELWLGLALMSG 759
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
L L+P Q A CA+LV+E + W N Y S V ++ L R +LQ +
Sbjct: 760 CLEWLEPHQFACACAALVTEVSRPDNWTN----YNLSREVDGALSQLQGERRKLFQLQHR 815
Query: 840 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 899
H V +P L+ Q +VE WA G+ W E+ + +LD+GD+ R+LRRT+D L+QIP +P +
Sbjct: 816 HRVTLPIWLERQLIAIVEEWALGVEWTELCANTSLDEGDIVRMLRRTLDFLSQIPYVPHI 875
Query: 900 DQRLQKNAVDASNVMDRPPISE 921
+ L+ NA A +++R P++E
Sbjct: 876 SEGLKVNAYRAIQLINRFPVNE 897
>gi|86609851|ref|YP_478613.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558393|gb|ABD03350.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 802
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/433 (45%), Positives = 260/433 (60%), Gaps = 69/433 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV ++LDE HY++D RGTVWEE IIYCP +Q+I LSAT+AN+D+L W+ Q+HG
Sbjct: 152 LRDVQAVILDECHYMNDQQRGTVWEEAIIYCPPTIQLIALSATLANSDQLTDWMNQVHGP 211
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHM-NRKLSLNYLQLSTSEVKPYKDGG 137
T LI S+ RPVPL ++F+ + L PLL+ E G+ + NR+L
Sbjct: 212 THLIDSNHRPVPLQFHFANRKGLFPLLEQTESGQWVRNRRLK------------------ 253
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
S+R NS H+ S + VP + L +LR RDMLPAI+F
Sbjct: 254 SKRPNS-----------------HEPSW--------AGVPDIAQVLENLRQRDMLPAIYF 288
Query: 198 IFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256
IF+R+GCD AV + D +L+ E E ++ + RF P+AVR + L +G+AAHH
Sbjct: 289 IFSRKGCDMAVASVRDLDLVASEEERQQLAEQIDRFCRETPEAVRRDQLDALYRGIAAHH 348
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP WK +E LFQ+GLVK+VFATETLAAGINMPART V+SSLSKRT +G LT++E
Sbjct: 349 AGMLPAWKGLVEHLFQQGLVKLVFATETLAAGINMPARTTVISSLSKRTDNGHRLLTASE 408
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM+GRAGRRG D GHVV VQ+P+EGA+E +L +G +PLVSQFT +YGMVLNLL
Sbjct: 409 FMQMSGRAGRRGKDIIGHVVTVQSPFEGAQEAARLATSGADPLVSQFTPTYGMVLNLL-- 466
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ---KETD 433
SLE AR L+ +SFG Y+ S L + E+ + +E D
Sbjct: 467 -----------------QKHSLEAARDLINRSFGQYLLSLQKLPEQQEILHTRAELEEID 509
Query: 434 VLTSEISDDAIDR 446
L I+D+ I R
Sbjct: 510 RLLGGIADEDIAR 522
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 15/258 (5%)
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
A + Q K+ L+ +I + KK++ EK +RL R + L ++ + ++
Sbjct: 556 AFPHIHAQEEKIRALEAQIRENPAHQVGKKLLGL----REKRQRLLKRLEHLERQSDSVQ 611
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLAMVLRNKILLDLK 785
W++F+ + V+ + L Q P GE AA+RG+NELWLA+ L +
Sbjct: 612 ELRWQQFMALVGVLQDFNCL----QEYQPTDSGEVVAALRGDNELWLALALLSGECQGCA 667
Query: 786 PAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EI 844
P LA V A+LVSE + S S V +V++ L R Q +H V +
Sbjct: 668 PHHLAGVVAALVSEAPR----SGTYSRLRTSGLVEDVLHGLRGLRRQLFRSQRQHQVFHV 723
Query: 845 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 904
P + +G+VE WA G+ W + LD GDL RL+RRT+DLL+QIP +P + L+
Sbjct: 724 PIGFEPSLAGIVEHWAQGIPWETLEASTNLDAGDLVRLIRRTLDLLSQIPYVPHLPAELR 783
Query: 905 KNAVDASNVMDRPPISEL 922
+NA A ++DR P+SEL
Sbjct: 784 ENARQAQKMLDRFPVSEL 801
>gi|86607265|ref|YP_476028.1| DEAD/DEAH box helicase [Synechococcus sp. JA-3-3Ab]
gi|86555807|gb|ABD00765.1| ATP-dependent helicase, DEAD/DEAH box family [Synechococcus sp.
JA-3-3Ab]
Length = 803
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 199/437 (45%), Positives = 261/437 (59%), Gaps = 69/437 (15%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
S L DV ++LDE HY++D RGTVWEE IIYCP +Q++ LSAT+AN+D+L W+ Q
Sbjct: 149 SRDPLQDVQAVILDECHYMNDQQRGTVWEEAIIYCPAHIQLVALSATLANSDQLTDWMNQ 208
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHM-NRKLSLNYLQLSTSEVKPY 133
+HG T LI SS RPVPL ++F+ + L PLL+ E G+ + NR+L + K
Sbjct: 209 VHGPTRLIDSSHRPVPLQFHFANRKGLFPLLEQTESGQWVCNRRL----------KSKLP 258
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
K G S S+G VP ++ + +LR RDMLP
Sbjct: 259 KSGQS------------------SYGG---------------VPDMVQVVENLRQRDMLP 285
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252
AI+FIF+R+GCD AV + + +L+ E E ++ + RF P+AVR + L +G+
Sbjct: 286 AIYFIFSRKGCDLAVASVGNLDLIASEAERQQLAEQIDRFCRETPEAVRRDQLDALYRGI 345
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
AAHHAG LP WK +E LFQ+GLVK+VFATETLAAGINMPART V+SSLSKRT +G L
Sbjct: 346 AAHHAGMLPAWKGLVEHLFQQGLVKLVFATETLAAGINMPARTTVISSLSKRTDNGHRLL 405
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
T++E QM+GRAGRRG D GHVV +Q+P+EGA+E +L AG +PLVSQFT +YGMVLN
Sbjct: 406 TASEFMQMSGRAGRRGKDVIGHVVTLQSPFEGAQEAARLATAGADPLVSQFTPTYGMVLN 465
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ--- 429
LL SLE AR L+ +SFG Y+ S L + EL +
Sbjct: 466 LL-------------------QKHSLEAARDLINRSFGQYLLSLQKLPEQQELQHTRAEL 506
Query: 430 KETDVLTSEISDDAIDR 446
+E D L ISD+ I R
Sbjct: 507 EEIDRLLEGISDEDIAR 523
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 11/256 (4%)
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
A + + Q K+ L+ +I + KK++ +EK +RL+ R + L ++ + ++
Sbjct: 557 AFPHIQAQEEKIRALEARIRANPAHRVGKKLLGL----QEKRQRLRKRLQHLERQSDSVQ 612
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
W++F+ + V+ E L GE AA+RG+NELWLA+ L + L P
Sbjct: 613 ELRWQQFMALVGVLQEFDCLREYQPTAS--GEVVAALRGDNELWLALALLSGECLGCAPH 670
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EIPC 846
A V A+LV+E + S S V +V++ L R Q +H V +P
Sbjct: 671 HFAGVIAALVAEPPR----SGTYSRLRTSGLVEDVLHGLRGLRRQLFRSQRQHQVFHVPI 726
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 906
+ +G+VE WA G+ W ++ LD GD+ RL+RRT+DLL+QIP +P + L++N
Sbjct: 727 GFEPGLAGIVEHWAQGIPWEQLEASTNLDAGDIVRLIRRTLDLLSQIPYIPHLPAELREN 786
Query: 907 AVDASNVMDRPPISEL 922
A A ++DR P+SEL
Sbjct: 787 ARKAQKLLDRFPVSEL 802
>gi|434387310|ref|YP_007097921.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
gi|428018300|gb|AFY94394.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
Length = 888
Score = 345 bits (884), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 217/590 (36%), Positives = 301/590 (51%), Gaps = 116/590 (19%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + + V+ +VLDE HY++D RGTVWEE IIYCP +Q++ LSA
Sbjct: 113 FRNMLYGTRIGEVGTS--MVGVEAVVLDECHYMNDKQRGTVWEESIIYCPPHIQLVALSA 170
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+ +L WIG +HG TELI S RPVPL ++F +LPLLD +N KL +
Sbjct: 171 TVANSKQLTEWIGAVHGSTELIYSDFRPVPLEFHFVNPKGILPLLDPNTAKLNPKLKTH- 229
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
R SRK D+ S V S
Sbjct: 230 ----------------RPTGSRKAEDVPSIGFVVS------------------------- 248
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L R+MLPAI+FIF+RRGCD AV + L+ E + +++ + F P+A R
Sbjct: 249 --KLAEREMLPAIYFIFSRRGCDKAVAEMATMQLVTPAESALLKIRIDDFLDKNPEAARA 306
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++ L KGVAAHHAG LP WKS +EELF GL+KVVFATETLAAGINMPART V+SSLS
Sbjct: 307 GQVEPLYKGVAAHHAGILPAWKSLVEELFGMGLIKVVFATETLAAGINMPARTTVISSLS 366
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G LT++E QMAGRAGRRG D G+VV QT +EGA+E + +PLVSQ
Sbjct: 367 KRTDQGHRLLTASEFLQMAGRAGRRGKDVVGYVVATQTRFEGAKEASDFATSAPDPLVSQ 426
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL +LEEAR+LVE+SFG++ + +L +
Sbjct: 427 FTPTYGMVLNLL-------------------QTHTLEEARELVERSFGHFTKTLHLLPQQ 467
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLS--EAAYKEMANLQEELKAEKRFRTELRRR 480
+ I+KE L +++++ +L+ E A+ ++ Q +LK + + +++
Sbjct: 468 QSIGDIKKELSTL-----QESLNKIDPNVLADYETAHSQLKLDQNQLKNLQLYTEQVQAG 522
Query: 481 MELKRF-SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 539
K+ +A + + H+P V +PAV + K
Sbjct: 523 QVSKQLPAAFPGTILSLKGKHVP-----------VATPLPAVLVTKI------------- 558
Query: 540 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR 589
G Y KP+ V LG DN WY + + V++
Sbjct: 559 -------------AGSGY-----KPA-LVCLGQDNRWYVVNHQDVVAVHK 589
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 10/193 (5%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W+EFL + V+ + L Q + P +GE AAAIRG+NELW+A+ L + L L P
Sbjct: 701 WQEFLNLIEVLRQVNGL----QGVLPTRIGEAAAAIRGDNELWIALALMSGYLDTLDPHH 756
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV +LVSE + W N Y+P+ V+ ++ L R ++Q ++ V +P +
Sbjct: 757 LAAVICALVSETPRSDSWTN----YDPADEVVMTLSALRGSRRQLFQIQRRYQVALPVWM 812
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VE WA ++W E+ + LD+GD+ R+LRRT+DLL+QIP +P LQ NA
Sbjct: 813 EYELVGIVENWALEVSWTELCSNTNLDEGDIVRMLRRTVDLLSQIPYVPHASDALQANAR 872
Query: 909 DASNVMDRPPISE 921
A ++DR PI+E
Sbjct: 873 RAIQLIDRFPINE 885
>gi|443317292|ref|ZP_21046707.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
gi|442783111|gb|ELR93036.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
Length = 908
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 274/475 (57%), Gaps = 76/475 (16%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L DV+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 106 FRNMLYGTRIGEVGTS--LQDVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLLALSA 163
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSL 120
TV N D+L W+ ++HG TELI S+ RPVPL +++ L PLLD K M+ L
Sbjct: 164 TVENGDQLTDWLSKVHGPTELIYSTFRPVPLDFHYCNGKGPGLGPLLDADQKEMHPILKK 223
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ + + S RR+ R + Q+ LS+
Sbjct: 224 HQRR---------RQPQSGRRDRRDGVSL----------QYVLSQ--------------- 249
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
L+ RDMLPAI+FIF+RRGCD AV + D +L++E E ++++ + F P+A
Sbjct: 250 -----LQQRDMLPAIYFIFSRRGCDRAVNEIGDFSLVNEAEAAQLKGIIDDFLKHSPEAA 304
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
R + L +G+AAHHAG LP WK +EELFQ+GL+KVVFATETLA GINMPART V+++
Sbjct: 305 RSGQVDPLYRGIAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAVGINMPARTTVIAN 364
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
LSKRT SG L ++E QM+GRAGRRG+D RG+VV V+TP+EGA+E L G +PLV
Sbjct: 365 LSKRTDSGHRLLMASEFLQMSGRAGRRGMDERGNVVTVETPFEGAKEAVYLATVGPDPLV 424
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
SQFT SYGMVLNLL +LEEAR+L+E+SFG Y+ + +L
Sbjct: 425 SQFTPSYGMVLNLL-------------------QTHNLEEARELIERSFGQYLATLHLLP 465
Query: 421 AKDELCKIQKETDVLTSEISDDAIDRKSRRLLS--EAAYKEMANLQEELKAEKRF 473
+ + ++ D ++ + +L+ EA ++E L+ EKR
Sbjct: 466 QQQAIAALK------------DTLEHQRAQLVGFDEAVLAAYEKVREHLREEKRL 508
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 145/280 (51%), Gaps = 32/280 (11%)
Query: 667 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 726
D KEQ +V L +++A T +++ +K +++RL+A + T + Q
Sbjct: 635 DTAPEVKEQLDRVRELDRQLA-THPARQWGNPKLLMK-RWRQVRRLEAELRDRTTALAQS 692
Query: 727 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 786
W+EF+ I V+ AL+ + PLGE AAAIRG+NELWLA+ L + L L P
Sbjct: 693 SDRYWQEFVNIMAVLTHFGALEADHPT--PLGEIAAAIRGDNELWLAIALASGELDHLSP 750
Query: 787 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
+QLAA CA+LV E + W N Y+PS +V++ + L R ++Q + V +P
Sbjct: 751 SQLAAACAALVVENSRPDTWSN----YDPSASVLDALGGLRNQRRELFQIQRQEDVNVPI 806
Query: 847 CLDSQFSGMVEAWAS------------------------GLTWREMMMDCALDDGDLARL 882
L+ G+VE WA G W ++ + +LD+GD+ R+
Sbjct: 807 WLEFDLIGIVERWADMGEGQLFTLPASNPEQPEAEDEGEGKDWPDLCGNTSLDEGDIVRI 866
Query: 883 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
LRRT+D L+QIP +P +D L+ A A +++R P++E+
Sbjct: 867 LRRTLDFLSQIPHVPHIDDNLRTTARRAVALLNRFPVNEV 906
>gi|427711200|ref|YP_007059824.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
gi|427375329|gb|AFY59281.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
Length = 896
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 260/480 (54%), Gaps = 73/480 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSA
Sbjct: 113 FRNMLYGTPIGEVGT--SLAGVESVVLDECHYMNDRQRGTVWEESIIYCPAEIQLVALSA 170
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN ++L WI +HG+T LI S RPVPL +YF L PLL+ + H+N +L
Sbjct: 171 TIANGEQLTDWITAVHGETRLIYSDWRPVPLQFYFCQGKGLFPLLNSEKTHLNARL---- 226
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ R ++ +N +V Q
Sbjct: 227 ----------LRSNPPPGRGRKRPEFLNLAYVVNQLAQ---------------------- 254
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
R MLPAI+FIF+RRGCD A+Q + NLL+ E + L F V
Sbjct: 255 ------RQMLPAIYFIFSRRGCDQALQQMGGVNLLNPEESQALNQILDEFLTRNGAVVPT 308
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
I L +G+AAHHAG LP+WK+ IEELFQ GL+KVVFATETLAAGINMPART VLSSLS
Sbjct: 309 AHIAPLRQGIAAHHAGVLPLWKTLIEELFQEGLIKVVFATETLAAGINMPARTTVLSSLS 368
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT SG LT++E Q++GRAGRRG+D GHVV +QTP+EGA E L G +PLVSQ
Sbjct: 369 KRTDSGHRLLTASEFLQISGRAGRRGMDEIGHVVTLQTPFEGAREAAYLATVGPDPLVSQ 428
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT SYGMVLNLL +LEEAR L+E+SFG Y+ + + +
Sbjct: 429 FTPSYGMVLNLL-------------------QRHTLEEARDLIERSFGQYLATLHLAPQR 469
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+ ++ E + + + D A + A L+E L+ E+R L + E
Sbjct: 470 QAITTLEVELEEINQRL-DPA---------NPQALSRYQKLRERLRQEQRLLKTLSHQAE 519
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 7/205 (3%)
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 777
R K +Q P W++FL + ++ E L+ V PLG+ AA++RGENELWLA+
Sbjct: 682 RQEKLSQQAHPH-WEDFLSLIAILQEFGGLE--DLVATPLGQLAASLRGENELWLALAFD 738
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+ L +L P QLAA CA+LV+E + W + Y S V ++ L R + Q
Sbjct: 739 SGALDELPPQQLAAACAALVTETPRPDSWTD----YALSAPVEEALSSLRPLRRQLFQAQ 794
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 897
+ V P L++ G+VE WA G+ W + LD GDL RLLRRT+D+L+QIP P
Sbjct: 795 RRKRVIFPIWLETGLVGLVEHWALGIDWSALCQATNLDQGDLVRLLRRTLDVLSQIPHAP 854
Query: 898 DVDQRLQKNAVDASNVMDRPPISEL 922
L+K+A A ++DR P+++L
Sbjct: 855 HASPTLKKSATQARQLLDRFPVNDL 879
>gi|37522164|ref|NP_925541.1| helicase [Gloeobacter violaceus PCC 7421]
gi|35213164|dbj|BAC90536.1| gll2595 [Gloeobacter violaceus PCC 7421]
Length = 879
Score = 338 bits (867), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 199/484 (41%), Positives = 265/484 (54%), Gaps = 72/484 (14%)
Query: 13 GMVSSESG--LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
GM E G L V+ ++LDE HY++D RGTVWEE IIYCP +Q++ LSAT+ANA +L
Sbjct: 117 GMPLGEMGTTLAQVEAVILDECHYMNDSQRGTVWEESIIYCPANIQLVALSATIANAGQL 176
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
WI ++HG T LI S RPVPL +F + L PLLD + +N
Sbjct: 177 TDWITRVHGPTRLIYSDFRPVPLEIHFCSPKGLFPLLDRGNQRINPHF------------ 224
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
+N +KH G+ L ++ P + L RD
Sbjct: 225 ----------KNIKKHLR----------GERNLQADA---------PSHKYVIGQLARRD 255
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
MLPAI+FIF+RRGCD A++ L D LLD E ++ + F +P+AVR + +
Sbjct: 256 MLPAIYFIFSRRGCDQALEELGDLCLLDAHEQEQLARQVDDFVREHPEAVRTHQLSQIYN 315
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+A HHAG LP WK+ IEELFQ+GL+KVVFATETLAAGINMPART V+S LSKRT SG
Sbjct: 316 GLAVHHAGVLPAWKALIEELFQQGLIKVVFATETLAAGINMPARTTVISMLSKRTDSGHR 375
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
L ++E QMAGRAGRRG+D GHVV +Q+P+E A E L + +PLVSQFT SYGMV
Sbjct: 376 PLNASEFLQMAGRAGRRGMDEVGHVVTLQSPFESAPEAAALALSQADPLVSQFTPSYGMV 435
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LNLL SLE A++LV SFG Y+ + + + E ++
Sbjct: 436 LNLL-------------------ERHSLETAQRLVGNSFGQYLATLHLEPVRREHAEVSA 476
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
E + L DA +SEA L+ +L+ +R + L+ + + +R AL+
Sbjct: 477 ELEALA---GGDAP-------VSEAELAAYEKLRGQLREARRLQMILKEQADREREQALE 526
Query: 491 DILK 494
LK
Sbjct: 527 GQLK 530
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 6/212 (2%)
Query: 710 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 769
++L R +RL +++ W+EFLR+ V+ + LD + LG AAAIRG+NE
Sbjct: 672 EKLLKRHQRLAEQLSGESDRYWQEFLRLVRVLEKVEFLDNHKPNA--LGAVAAAIRGDNE 729
Query: 770 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
LWLA+ L N + L Q+A + A+LVSE + W + PS V I L +
Sbjct: 730 LWLALALLNPEVEKLNAVQMAGLAAALVSEPPRPNTW----ATVTPSPQVEEAIAALQQT 785
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
R + + LQ + V I L+ + G+VE WA G+ W+ + LD+GDL RLLRRT DL
Sbjct: 786 RRNLVRLQRRQQVLISVWLEERLVGLVELWAKGVDWQTLCGSTNLDEGDLVRLLRRTADL 845
Query: 890 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
L Q+P +P + +++ ++ ++DR P+SE
Sbjct: 846 LRQVPHVPYLTDTVRQTCAESQRLLDRFPVSE 877
>gi|254413640|ref|ZP_05027410.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179747|gb|EDX74741.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
Length = 884
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 203/526 (38%), Positives = 287/526 (54%), Gaps = 82/526 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G + + L V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSA
Sbjct: 114 FRNMLYGTRIGEIGT--SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPPEVQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN+D+L W+ +HG TE I S RPVPL + F+ + PLLD +N +L
Sbjct: 172 TVANSDQLTDWLNLVHGATERIYSDFRPVPLQFSFANPKGIFPLLDSNQTKLNPRLKPKR 231
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ +P + SN V
Sbjct: 232 NKGRGRGGRP---------------ESPSNAFV--------------------------- 249
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
L L+ RDMLPAI+FIF+RRGCD +V+ L + +L++ E +E++ + F P+A R
Sbjct: 250 LAQLQQRDMLPAIYFIFSRRGCDRSVEELGELSLVNAKEAAELKKRIDEFLRRNPEAGRA 309
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
+ L +G+AAHHAG LP WK F+EELFQ GLVKVVFATETLAAGINMPART V+S+LS
Sbjct: 310 GQVAPLYRGIAAHHAGILPAWKGFVEELFQLGLVKVVFATETLAAGINMPARTTVISTLS 369
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
KRT G LT++E QMAGRAGRRG+D G+VV VQTP+EGA+E L + +PLVSQ
Sbjct: 370 KRTDRGHRLLTASEFLQMAGRAGRRGMDATGYVVTVQTPFEGAKEAAYLATSQADPLVSQ 429
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
FT +YGMVLNLL +L EA++LVE+SF Y+ + + +
Sbjct: 430 FTPNYGMVLNLL-------------------QTHTLPEAKELVERSFAQYLATLYLQPQQ 470
Query: 423 DELCKIQKE---TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
+ ++ E D+ + + +A+ R + L+E LK E+R L+R
Sbjct: 471 QAITELTTELAKLDIQLAPVDLNALGRYEK-------------LKERLKEERRLLKTLQR 517
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 525
+ + + + + I+ + G L L +Y V +PA+ + K
Sbjct: 518 QAQAAQVAEIAQIIPEAPLGTLLSLKGKYIP---VPEPIPAILVAK 560
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 8/194 (4%)
Query: 731 WKEFLRISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+EFL + ++ L D+ LG+ AAAIRG+NELWL + L + L P L
Sbjct: 698 WQEFLNLIEILRTFGCLEDVKPTS---LGQAAAAIRGDNELWLGLALMSSAFDQLDPHHL 754
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA +LV+E + W N Y PS V+ ++ L + R +Q ++ V +P L+
Sbjct: 755 AACACALVTETPRPDSWTN----YPPSEPVLAPLDSLRQTRHQLFRVQRRYQVALPIWLE 810
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
G+VE WA G+ W E+ D +LD+GD+ RLLRRT+D L+QIP +P + L++NA+
Sbjct: 811 RDLIGLVEQWALGVEWTELCADTSLDEGDIVRLLRRTVDFLSQIPHVPFLSDGLKRNAIR 870
Query: 910 ASNVMDRPPISELA 923
A ++DR P++EL
Sbjct: 871 AIQLLDRFPVNELG 884
>gi|119488898|ref|ZP_01621860.1| antiviral protein [Lyngbya sp. PCC 8106]
gi|119455059|gb|EAW36201.1| antiviral protein [Lyngbya sp. PCC 8106]
Length = 1026
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 250/763 (32%), Positives = 375/763 (49%), Gaps = 116/763 (15%)
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC----------NLLDECEMSEV 225
VP+ + L+ L+ +MLPAI+FIF+RRGCD AV E+C +L++E E + +
Sbjct: 360 VPETLYVLYELQEEEMLPAIYFIFSRRGCDLAV---EECFYAVHELGFISLVNEAEATLL 416
Query: 226 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+ F D +I+ L G+AAHHAG LP WK +EELF GL+KVV+ATETL
Sbjct: 417 REKIDIFCAHNTDVSPSRSIEPLYLGIAAHHAGILPAWKVLVEELFTLGLIKVVYATETL 476
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
AAGINMPART V+SSLSKRT G L +E QM+GRAGRRG+D GHVV VQTP+EGA
Sbjct: 477 AAGINMPARTTVISSLSKRTDEGIRLLKPSEFLQMSGRAGRRGMDLLGHVVTVQTPFEGA 536
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L +PLVSQFT SYGMVLNLL SLE+A+ L+
Sbjct: 537 TEAAYLATTEPDPLVSQFTPSYGMVLNLL-------------------QTHSLEQAKALI 577
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 465
E+SFG Y+ + + + E+ +++ E + + + + D+ L E LQ
Sbjct: 578 ERSFGQYLSTASLQPQEVEMQQLKAELADIEANLGLEG-DQTIEDL--ETVIANYEKLQA 634
Query: 466 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 525
L+ E+R L +L+D L + G+ ++ + LG
Sbjct: 635 RLREERR----------------LLKLLQDQAEETL---------TAGMSQALVSAVLGT 669
Query: 526 FDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPS---YYVALGSDNTWYTFTEK 582
SL + A N Q G Q P Y++ LG DN WY
Sbjct: 670 LVSLRGKHVSPNAR-------NPEDQPLGAVLVAQTPSPGQAPYFLCLGQDNRWYV---- 718
Query: 583 WIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSW 642
+G +V GD LPR T +D ++ + KL G
Sbjct: 719 -------VGASDVVGLHGD-LPRLTAVDYMDIPDIPY-KLGQKRKGD------------- 756
Query: 643 SLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTV 702
+L+ V +SE + + Q +V +++++ T E+ K +
Sbjct: 757 TLSEAVAQQISE--------VPMPEVPPEVQHQMQQVREIEEQL-ETHPLYEWGKPQKLL 807
Query: 703 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 762
K E+ L + L IE + W++FL + ++ + ALD + LG+ A
Sbjct: 808 K-RRERWTDLNYEVRLLQAEIEADQGHYWQKFLDLILILQQFEALDELQPTV--LGQATA 864
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
A+RG+NELWL + L + L+P+QLAA CA+LV+E + W + Y+ S V +
Sbjct: 865 ALRGDNELWLGIALMSGEFYQLEPSQLAAACAALVTEISRSDTWTD----YQLSEPVQSA 920
Query: 823 INVLDEHRSSFLELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGD 878
+ L R +++Q + VE +P + Q S ++E W G+ W +++ +LD+GD
Sbjct: 921 LERLWGLRKMLIKVQSHYQVEFLVLPERWEHQNMSAIIEQWGQGVDWLQLVEHTSLDEGD 980
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
L R++RRT+D L+QIP +P ++ ++ A+DA ++DR PI+E
Sbjct: 981 LVRMIRRTLDFLSQIPHVPHLNGSFKQKAMDAKKLLDRYPINE 1023
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 153/286 (53%), Gaps = 39/286 (13%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L V+ +VLDE HY++D +RGTVWEE IIYCP E++++ LSA
Sbjct: 115 FRNMLYGTPIGEVGT--SLEGVEAVVLDECHYMNDRTRGTVWEESIIYCPPEIKLLALSA 172
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
T+AN+D+L W+ ++HG TELI SS RPVPL ++F L PLL+E G +NR L
Sbjct: 173 TIANSDQLTDWLCKVHGPTELIYSSFRPVPLQFHFCNTQGLYPLLNESGTEINRHL---- 228
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVID 181
+K + +N + F +H+ S+ +
Sbjct: 229 -------------------EPKKRRNNRFDNRRSRFHNKHKQQGQSLAS----------- 258
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDA 239
L L+ + LP I+FI +R+GCD AV +E + ++ E + A+ F P
Sbjct: 259 ALKQLQKQGTLPTIYFISSRKGCDRAVTDPKIERISFVNSSEADRLNTAINAFLNANPKL 318
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+ ++ L +G+A +H P W+ F+ ELFQ+GLVKV+F ETL
Sbjct: 319 KQFKSLDSLSRGIATYHLELPPAWRIFVAELFQQGLVKVLFVPETL 364
>gi|72382836|ref|YP_292191.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002686|gb|AAZ58488.1| helicase, C-terminal protein:DEAD/DEAH box helicase, N-terminal
protein [Prochlorococcus marinus str. NATL2A]
Length = 927
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 178/398 (44%), Positives = 243/398 (61%), Gaps = 59/398 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D++ +VLDE HY++D RGTVWEE II+CPK VQ + LSATVANA +L WI Q+HG
Sbjct: 137 LLDIETVVLDECHYMNDAHRGTVWEESIIHCPKSVQFVALSATVANAGQLTDWIEQVHGP 196
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGS 138
T+LI+S RPVPL + F + L PLL++KG H N K+ +P K
Sbjct: 197 TDLISSDLRPVPLEFNFCSAKGLHPLLNDKGTGLHPNCKI-----------WRPTKSHKK 245
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R R LSK + + + P + + L R+MLPAI+FI
Sbjct: 246 RGR---------------------LSKPT-----QPEAPSLGFVISKLAERNMLPAIYFI 279
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHA 257
F+RRGCD AV+ + L+++ E ++ +++ IL + +R+ I+ L GVA+HHA
Sbjct: 280 FSRRGCDKAVKTIASTCLVNQEERKSIQDRFEKYVILNSEGLRDDLHIQALFNGVASHHA 339
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK IEELFQ GL+KVVFATETLAAGINMPART ++S+LSKR+ +G QL +E
Sbjct: 340 GVLPAWKELIEELFQEGLIKVVFATETLAAGINMPARTTIISTLSKRSDNGHRQLMGSEF 399
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D+RG+VV +QT +EG E +L + +PL+SQFT SYGMVLNLL
Sbjct: 400 LQMAGRAGRRGLDSRGYVVTLQTRFEGVREAGQLATSPADPLISQFTPSYGMVLNLLQRY 459
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+ L+++++L+E+SF Y+ S
Sbjct: 460 E-------------------LDKSKELIERSFSRYLAS 478
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ FL + V++ LD +N I G + ++RGENELWL +VL + L +L P +L
Sbjct: 718 WETFLSLIKVLNHFGCLDDLNPTEI---GRSIGSLRGENELWLGLVLMSGHLDELTPTEL 774
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V S+ +E + LW S + PS N L R +QE+ G+EIP
Sbjct: 775 AGVVQSIATEVNRPDLW----SGFIPSAVADEAFNDLSNIRRELFRVQERFGIEIPILWS 830
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QIP V ++L+ NA
Sbjct: 831 SELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQIPYCESVSRQLRNNAKA 890
Query: 910 ASNVMDRPPISE 921
A +MDR P+ E
Sbjct: 891 AMKLMDRFPVRE 902
>gi|124026572|ref|YP_001015687.1| DNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961640|gb|ABM76423.1| putative DNA helicase [Prochlorococcus marinus str. NATL1A]
Length = 927
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 243/398 (61%), Gaps = 59/398 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D++ +VLDE HY++D RGTVWEE II+CPK VQ + LSATVANA +L WI Q+HG
Sbjct: 137 LLDIETVVLDECHYMNDAHRGTVWEESIIHCPKSVQFVALSATVANAGQLTDWIEQVHGP 196
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGS 138
T+LI+S RPVPL + F + L PLL++KG H N K+ +P K
Sbjct: 197 TDLISSDLRPVPLEFNFCSAKGLHPLLNDKGTGLHPNCKI-----------WRPTKSHKK 245
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R R LSK + + + P + + L R+MLPAI+FI
Sbjct: 246 RGR---------------------LSKPT-----QPESPSLGFVISKLAERNMLPAIYFI 279
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHA 257
F+RRGCD AV+ + L+++ E ++ +++ IL + +R+ I+ L G+A+HHA
Sbjct: 280 FSRRGCDKAVKTIASTCLVNQEERKSIQDRFEKYVILNSEGLRDDLHIQALFNGIASHHA 339
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK IEELFQ GL+KVVFATETLAAGINMPART ++S+LSKR+ +G QL +E
Sbjct: 340 GVLPAWKELIEELFQEGLIKVVFATETLAAGINMPARTTIISTLSKRSDNGHRQLMGSEF 399
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D+RG+VV +QT +EG E +L + +PL+SQFT SYGMVLNLL
Sbjct: 400 LQMAGRAGRRGLDSRGYVVTLQTRFEGVREAGQLATSPADPLISQFTPSYGMVLNLLQRY 459
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+ L+++++L+E+SF Y+ S
Sbjct: 460 E-------------------LDKSKELIERSFSRYLAS 478
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ FL + V++ LD +N I G + ++RGENELWL +VL + L +L P +L
Sbjct: 718 WETFLSLIKVLNHFGCLDDLNPTEI---GRSIGSLRGENELWLGLVLMSGHLDELTPTEL 774
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V S+ +E + LW S + PS N L R +QE+ G+EIP
Sbjct: 775 AGVVQSIATEVNRPDLW----SGFIPSAVADEAFNDLSNIRRELFRVQERFGIEIPILWS 830
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QIP V ++L+ NA
Sbjct: 831 SELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQIPYCESVSRQLRNNAKA 890
Query: 910 ASNVMDRPPISE 921
A +MDR P+ E
Sbjct: 891 AMKLMDRFPVRE 902
>gi|116071149|ref|ZP_01468418.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066554|gb|EAU72311.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 926
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 177/396 (44%), Positives = 234/396 (59%), Gaps = 55/396 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 141 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIEKVHGP 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S RPVPL + F + L PLL+E G ++ K ++ ++
Sbjct: 201 TTLIVSDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGQK 248
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R N + + P + + + RDMLPAI+FIF+
Sbjct: 249 RKGRS-----------------------NKPPQPEAPPISFVVAQMAQRDMLPAIYFIFS 285
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RR CD +V+ L L+ + E + + L + + P+AVR+ LL+G+AAHHAG
Sbjct: 286 RRNCDKSVRDLGAQCLVTQDEQARIHARLSAYSVANPEAVRDGIHADALLRGIAAHHAGV 345
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L +E Q
Sbjct: 346 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMGSEFLQ 405
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 406 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL----- 460
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
SLE+AR+LV++SFG Y+
Sbjct: 461 --------------QRHSLEKARELVQRSFGRYLAG 482
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 10/194 (5%)
Query: 731 WKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W FL + +++ + LD T+V G T AA+RG+NELWL + L + L +L P
Sbjct: 722 WDMFLALKDILQQFGCLDDLDPTEV----GRTVAALRGDNELWLGLALMSGHLDELDPPN 777
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + PS + L R L QE+ V +P
Sbjct: 778 LAAVFEAISTEVNRPDLW----SGFPPSGPAEEALQDLSGLRRELLRAQERASVVVPAWW 833
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 EPELMGLVEAWAKGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHAK 893
Query: 909 DASNVMDRPPISEL 922
A ++R P++EL
Sbjct: 894 QALKAINRFPVAEL 907
>gi|33865170|ref|NP_896729.1| DNA helicase [Synechococcus sp. WH 8102]
gi|33638854|emb|CAE07151.1| putative DNA helicase [Synechococcus sp. WH 8102]
Length = 909
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 182/410 (44%), Positives = 241/410 (58%), Gaps = 55/410 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 125 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIQKVHGP 184
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL++ G ++ K ++ +
Sbjct: 185 TTLVLSDYRPVPLQFSFCSAKGLHPLLNDAGTGLH------------PNCKVWRAPKGHK 232
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R SF Q+++ RDMLPAI+FIF+
Sbjct: 233 RKGRSAKPPQPEPPPISFVVAQMAE-----------------------RDMLPAIYFIFS 269
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD AV+ L L+++ E + + LK + P+AVR+ LL+G+AAHHAG
Sbjct: 270 RRGCDKAVRDLGIQCLVNKEEQARIRARLKAYSSENPEAVRDGIHADALLRGIAAHHAGV 329
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPART V+++LSKRT G L +E Q
Sbjct: 330 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARTTVIAALSKRTERGHRPLMGSEFLQ 389
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D+RG+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGLDSRGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL----- 444
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
L +AR+LVE+SFG Y+ S ++ +D L +++
Sbjct: 445 --------------QRHDLNKARELVERSFGRYLASLDLVEEEDVLSQLR 480
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 6/191 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ FL + ++ + LD T +G T AA+RG+NELWL + L + L DL LA
Sbjct: 706 WETFLALLEILQQFGCLDELTPT--EIGRTVAALRGDNELWLGLALMSGHLDDLSAPDLA 763
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ +E + LW S + P ++ L R L QE+ GV +P +
Sbjct: 764 AVFEAISTEVNRPDLW----SGFPPPPAAEEALHDLSGLRRELLRAQERLGVVLPAWWEP 819
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ G+VE+WA G W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A A
Sbjct: 820 ELMGLVESWARGTDWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQA 879
Query: 911 SNVMDRPPISE 921
++R P++E
Sbjct: 880 LRAINRFPVAE 890
>gi|113954669|ref|YP_731534.1| superfamily II RNA helicase [Synechococcus sp. CC9311]
gi|113882020|gb|ABI46978.1| Superfamily II RNA helicase [Synechococcus sp. CC9311]
Length = 910
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 187/446 (41%), Positives = 256/446 (57%), Gaps = 62/446 (13%)
Query: 4 RIVVFSCSV--GMVSSESG-----LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 56
R+VV + + M+ +E+ L DV+ +VLDE HY++D RGTVWEE II+CP VQ
Sbjct: 98 RVVVMTTEIFRNMLYAEADEHDDPLADVESVVLDECHYMNDSQRGTVWEESIIHCPPSVQ 157
Query: 57 IICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 116
++ LSATVANA +L WI ++HG T L+ S RPVPL + F + L PLL+E+G ++
Sbjct: 158 LVALSATVANAGQLTDWIEKVHGPTRLVLSDFRPVPLQFSFCSAKGLHPLLNEQGTGIH- 216
Query: 117 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
K ++ +R R SF Q+++
Sbjct: 217 -----------PNCKVWRAPKGHKRKGRSPRPPQPEAPPISFVVAQMAQ----------- 254
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 236
R+MLPAI+FIF+RRGCD AV+ L L+ E E S + L+ + +
Sbjct: 255 ------------REMLPAIYFIFSRRGCDKAVRDLGVQCLVTEAEQSIIRERLEAYTVAN 302
Query: 237 PDAVRE-PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
P+AVR+ LL+G+A+HHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+
Sbjct: 303 PEAVRDGQHADALLRGIASHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARS 362
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V++SLSKRT G L ++E QMAGRAGRRG+D +G+VV VQ+ +EG E +L +
Sbjct: 363 TVIASLSKRTERGHRPLMASEFLQMAGRAGRRGLDTQGYVVTVQSRFEGVREAAQLATSP 422
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+PLVSQFT SYGMVLNLL L +AR+LVE+SFG Y+ S
Sbjct: 423 SDPLVSQFTPSYGMVLNLL-------------------QRHDLAKARELVERSFGRYLAS 463
Query: 416 NVMLAAKDELCKIQKETDVLTSEISD 441
++ ++ L +++ + L D
Sbjct: 464 LDLVEEEEHLGELRMQLAQLQGTAGD 489
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 17/229 (7%)
Query: 693 KEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ 752
K +++ D E+ + L RS R W+ FL + ++ LD
Sbjct: 676 KHRRRMEDLQHEIRERQQLLHHRSNR-----------HWEIFLALIEILRHFGCLDDLEP 724
Query: 753 VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI 812
+G T AA+RG+NELWL + L + L +L PA+LAAV ++ +E + LW S
Sbjct: 725 T--EIGRTVAALRGDNELWLGLALMSGHLDELPPAELAAVFEAISTEVNRPDLW----SA 778
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 872
+ ++ L R L QE+ V +P + + G+VEAWA G +W +++ +
Sbjct: 779 FPAPPLAEEALHDLSGIRRELLRAQERFKVVVPAWWEPELMGLVEAWAKGTSWNDLIANT 838
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
+LD+GD+ R++RRT+DLLAQ+P + ++L+KNA A ++R P++E
Sbjct: 839 SLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRKNARAALIAINRFPVAE 887
>gi|352095918|ref|ZP_08956865.1| DSH domain protein [Synechococcus sp. WH 8016]
gi|351677274|gb|EHA60423.1| DSH domain protein [Synechococcus sp. WH 8016]
Length = 911
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/446 (41%), Positives = 254/446 (56%), Gaps = 62/446 (13%)
Query: 4 RIVVFSCSV--GMVSSESG-----LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 56
R+VV + + M+ +E+ L DV+ +VLDE HY++D RGTVWEE II+CP VQ
Sbjct: 99 RVVVMTTEIFRNMLYAEADEHDDPLADVESVVLDECHYMNDSQRGTVWEESIIHCPPSVQ 158
Query: 57 IICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 116
++ LSATVANA +L WI ++HG T L+ S RPVPL + F + L PLL+E+G ++
Sbjct: 159 LVALSATVANAGQLTDWIEKVHGPTRLVLSDFRPVPLQFSFCSAKGLHPLLNEQGTGIH- 217
Query: 117 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
K ++ +R R SF Q+++
Sbjct: 218 -----------PNCKVWRAPKGHKRKGRSPRPPQPEAPPISFVVAQMAQ----------- 255
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 236
R+MLPAI+FIF+RRGCD AV+ L L+ E E + + L+ +
Sbjct: 256 ------------REMLPAIYFIFSRRGCDKAVRDLGVQCLVSEAEQAIIRDRLEAYTAAN 303
Query: 237 PDAVREP-AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
P+AVR+ LL+G+A+HHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+
Sbjct: 304 PEAVRDGLHADALLRGIASHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARS 363
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V++SLSKRT G L ++E QMAGRAGRRG+D +G+VV VQ+ +EG E +L +
Sbjct: 364 TVIASLSKRTERGHRPLMASEFLQMAGRAGRRGLDTQGYVVTVQSRFEGVREAAQLATSP 423
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+PLVSQFT SYGMVLNLL L +AR+LVE+SFG Y+ S
Sbjct: 424 SDPLVSQFTPSYGMVLNLL-------------------QRHDLAKARELVERSFGRYLAS 464
Query: 416 NVMLAAKDELCKIQKETDVLTSEISD 441
++ +D L ++ + L D
Sbjct: 465 LDLVEEEDHLGALRMQLAQLQGTAGD 490
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 10/193 (5%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W+ FL + ++ LD + P +G T AA+RG+NELWL + L + L +L PA+
Sbjct: 704 WETFLALIEILRHFGCLD----ALEPTEIGRTVAALRGDNELWLGLALMSGHLDELPPAE 759
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + ++ L R L QE+ V +P
Sbjct: 760 LAAVFEAISTEVNRPDLW----SAFPAPPLAEEALHDLSGIRRELLRAQERFKVVVPAWW 815
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G TW +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+KNA
Sbjct: 816 EPELMGLVEAWAKGTTWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRKNAR 875
Query: 909 DASNVMDRPPISE 921
A ++R P++E
Sbjct: 876 AALTAINRFPVAE 888
>gi|148243022|ref|YP_001228179.1| superfamily II RNA helicase [Synechococcus sp. RCC307]
gi|147851332|emb|CAK28826.1| Superfamily II RNA helicase [Synechococcus sp. RCC307]
Length = 926
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 248/419 (59%), Gaps = 55/419 (13%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
V+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI Q+HG +L
Sbjct: 143 VEAVVLDECHYMNDSQRGTVWEESIIHCPPAIQLVGLSATVANAGQLTDWIEQVHGPADL 202
Query: 84 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
I S RPVPL + F + L PLL++KG ++ K ++ R
Sbjct: 203 IVSDFRPVPLQFSFCSAKGLHPLLNDKGTGLH------------PNCKVWRAPKGHHRRG 250
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ F V Q+++ R M+PAI F+F+RRG
Sbjct: 251 KNPKPPQPEPPSMGF----------------MVAQLVE-------RQMVPAIVFLFSRRG 287
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLPI 262
CD AV+ L +L++E E E+ LAL+ F P+AVR+ + LL+GVAAHHAG LP
Sbjct: 288 CDKAVRDLLKASLVNEQEARELRLALEAFAQTSPEAVRDGVHAEALLRGVAAHHAGVLPA 347
Query: 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 322
WK IE+LFQRGLVKVVFATETLAAGINMPART V+S+LSKRT +G L ++E QMAG
Sbjct: 348 WKELIEQLFQRGLVKVVFATETLAAGINMPARTTVISALSKRTENGHRPLMASEFLQMAG 407
Query: 323 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 382
RAGRRG+D +G+VV +Q+ +EG E +L + +PLVSQFT SYGMVLNLL +
Sbjct: 408 RAGRRGLDTQGYVVTMQSRFEGVREAGQLATSPPDPLVSQFTPSYGMVLNLLQRYE---- 463
Query: 383 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 441
L +A++LVE+SFG Y+ + + + + +++++ ++L + D
Sbjct: 464 ---------------LSKAKELVERSFGRYLATLDLAEDQSRIAELRQQLELLGETVPD 507
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 731 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W+ FL + ++ LD T+V G T AA+RG+NELWL + L + +L PA
Sbjct: 721 WETFLSLIEILQHFGCLDELDPTEV----GRTVAALRGDNELWLGLALMSGHCDELPPAD 776
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LA+V ++ +E + LW S Y P ++ L R L QE H V P
Sbjct: 777 LASVLEAISTEVSRPDLW----SAYPPPPQAEETLHDLRGLRRELLRQQEIHAVVFPVWW 832
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ G+V+AWA G +W +++ + +LD+GD+ RLLRRT+DLLAQ+P P V + L+ N
Sbjct: 833 EPDLMGLVKAWAEGESWSDLIANTSLDEGDVVRLLRRTVDLLAQLPYCPAVSEELRSNGR 892
Query: 909 DASNVMDRPPISE 921
A +++R P+ E
Sbjct: 893 RALQMINRFPVKE 905
>gi|148240376|ref|YP_001225763.1| superfamily II RNA helicase [Synechococcus sp. WH 7803]
gi|147848915|emb|CAK24466.1| Superfamily II RNA helicase [Synechococcus sp. WH 7803]
Length = 924
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/400 (45%), Positives = 235/400 (58%), Gaps = 55/400 (13%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
S+ L V+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI +
Sbjct: 132 SDDPLAGVEAVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIER 191
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
+HG T L+ S RPVPL + F + L PLL+++G ++ K ++
Sbjct: 192 VHGPTRLVVSDFRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAP 239
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
+R R SF Q++ +R+MLPAI+
Sbjct: 240 KGNKRKGRSQRPPQPEPPPISFVVAQMA-----------------------AREMLPAIY 276
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAH 255
FIF+RRGCD AV+ L L+ E E + + LK + P+AVR+ LL+G+AAH
Sbjct: 277 FIFSRRGCDKAVRDLGVQCLVSESEQARIRERLKAYTEANPEAVRDGLHADALLRGIAAH 336
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+SSLSKRT G L ++
Sbjct: 337 HAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISSLSKRTERGHRPLMAS 396
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 397 EFLQMAGRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVLNLL- 455
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +AR+LVE+SFG Y+ S
Sbjct: 456 ------------------QRHDLAKARELVERSFGRYLAS 477
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 731 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W FL + ++ ALD + T++ G T AA+RG+NELWL + L + L DL PA+
Sbjct: 717 WDTFLSLMEILQHFGALDDLVPTEI----GRTVAALRGDNELWLGLALMSGHLDDLPPAE 772
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + P ++ L R L QE+H V +P
Sbjct: 773 LAAVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLSGLRRELLRAQERHQVVVPAWW 828
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L+ +A
Sbjct: 829 EPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQVPYCEAISEQLRSHAR 888
Query: 909 DASNVMDRPPISE 921
A ++R P++E
Sbjct: 889 QALKAINRFPVAE 901
>gi|87125389|ref|ZP_01081235.1| putative DNA helicase [Synechococcus sp. RS9917]
gi|86167158|gb|EAQ68419.1| putative DNA helicase [Synechococcus sp. RS9917]
Length = 924
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 178/396 (44%), Positives = 233/396 (58%), Gaps = 55/396 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 136 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIERVHGP 195
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL+++G ++ K ++ +
Sbjct: 196 TRLVLSDHRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPKGSK 243
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R SF Q+++ RDMLPAI+FIF+
Sbjct: 244 RKGRSPKPPQPEPPPISFVVAQMAE-----------------------RDMLPAIYFIFS 280
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD AV+ L L++E E + + K + P+AVR+ LL+G+AAHHAG
Sbjct: 281 RRGCDKAVRDLGAQCLVNENEQARIRERFKAYASANPEAVRDGVHADALLRGIAAHHAGV 340
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L ++E Q
Sbjct: 341 LPAWKELIEELFQEGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMASEFLQ 400
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 401 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVLNLL----- 455
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +AR+LVE+SFG Y+ S
Sbjct: 456 --------------QRHDLAKARELVERSFGRYLAS 477
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 111/191 (58%), Gaps = 6/191 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ FL + ++ LD +G T AA+RG+NELWL + L + L +L+PA+LA
Sbjct: 717 WETFLALIEILQHFGCLDDLEPT--EIGRTVAALRGDNELWLGLALMSGHLDELQPAELA 774
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ +E + LW S + P ++ L R L QE+ V +P +
Sbjct: 775 AVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLMGIRRELLRAQERAQVVMPAWWEP 830
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ G+VEAWASG W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+++A A
Sbjct: 831 ELMGLVEAWASGTAWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRRHARQA 890
Query: 911 SNVMDRPPISE 921
++R P++E
Sbjct: 891 LKAINRFPVAE 901
>gi|78184204|ref|YP_376639.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168498|gb|ABB25595.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 926
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 233/396 (58%), Gaps = 55/396 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI ++HG
Sbjct: 141 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPPIQLVALSATVANAGQLTDWIEKVHGP 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T LI S RPVPL + F + L PLL+E G ++ K ++ ++
Sbjct: 201 TTLIVSDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGQK 248
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R N + + P + + + RDMLPAI+FIF+
Sbjct: 249 RKGRS-----------------------NKPPQPEAPPISFVVAQMAQRDMLPAIYFIFS 285
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RR CD +V+ L L+ + E + ++ + P+AVR+ L++G+AAHHAG
Sbjct: 286 RRNCDKSVRDLGAQCLVTQDEQARIQARFAAYSAANPEAVRDGIHADALMRGIAAHHAGV 345
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L +E Q
Sbjct: 346 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMGSEFLQ 405
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 406 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL----- 460
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
SLE+AR+LV++SFG Y+
Sbjct: 461 --------------QRHSLEKARELVQRSFGRYLAG 482
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 10/194 (5%)
Query: 731 WKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W FL + +++ + LD T+V G T AA+RG+NELWL + L + L +L P
Sbjct: 722 WDMFLALKDILQQFGCLDDLDPTEV----GRTVAALRGDNELWLGLALMSGHLDELDPPN 777
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + PS + L R L QE+ V +P
Sbjct: 778 LAAVFEAISTEVNRPDLW----SGFPPSGPAEEALQDLSGLRRELLRAQERASVVVPAWW 833
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 EPELMGLVEAWAKGTSWVDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHAK 893
Query: 909 DASNVMDRPPISEL 922
A ++R P++EL
Sbjct: 894 QALKAINRFPVAEL 907
>gi|116073712|ref|ZP_01470974.1| putative DNA helicase [Synechococcus sp. RS9916]
gi|116069017|gb|EAU74769.1| putative DNA helicase [Synechococcus sp. RS9916]
Length = 924
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 185/420 (44%), Positives = 243/420 (57%), Gaps = 62/420 (14%)
Query: 4 RIVVFSCSV--GMVSSES-----GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 56
R+VV + + M+ +E+ L DV+ +VLDE HY++D RGTVWEE II+CP VQ
Sbjct: 112 RVVVMTTEIFRNMLYAEAEEGNDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQ 171
Query: 57 IICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 116
++ LSATVANA +L WI ++HG T L+ S RPVPL + F + L PLL+E G ++
Sbjct: 172 LVALSATVANAGQLTDWIERVHGPTRLVLSDFRPVPLQFSFCSAKGLHPLLNEAGTGLH- 230
Query: 117 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
K ++ +R R SF Q+++
Sbjct: 231 -----------PNCKVWRAPKGHKRKGRSPKPPQPEAPPISFVVAQMAE----------- 268
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 236
R MLPAI+FIF+RRGCD AV+ L L+ E + + LK +
Sbjct: 269 ------------RAMLPAIYFIFSRRGCDKAVRDLGVQCLVTAEEQARIAARLKAYTAAN 316
Query: 237 PDAVREP-AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
P+AVR+ LL+G+AAHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+
Sbjct: 317 PEAVRDGLHADALLRGIAAHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARS 376
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V++SLSKRT G L ++E QMAGRAGRRG+D++G+VV VQ+ +EG E +L +
Sbjct: 377 TVIASLSKRTERGHRPLMASEFLQMAGRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSP 436
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+PLVSQFT SYGMVLNLL A L +AR+LVE+SFG Y+ S
Sbjct: 437 ADPLVSQFTPSYGMVLNLL-------------------ARHDLAKARELVERSFGRYLAS 477
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 6/191 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ FL + ++ LD +G T AA+RG+NELWL + L + L DL PA+LA
Sbjct: 717 WEIFLALIEILQHFGCLDELQPT--EIGRTVAALRGDNELWLGLALMSGHLDDLPPAELA 774
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ +E + LW S + P ++ L R L QE+ V +P +
Sbjct: 775 AVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLMGIRRELLRAQERCNVVVPAWWEP 830
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ G+VEAWA+G W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A A
Sbjct: 831 ELMGLVEAWANGCAWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQA 890
Query: 911 SNVMDRPPISE 921
++R P++E
Sbjct: 891 LRAINRFPVAE 901
>gi|317968960|ref|ZP_07970350.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0205]
Length = 936
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/396 (44%), Positives = 233/396 (58%), Gaps = 53/396 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI Q+HG
Sbjct: 137 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPVVQLVALSATVANAGQLTDWIEQVHGP 196
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL+++G ++ +V GG R
Sbjct: 197 TRLVMSDFRPVPLQFSFCSAKGLHPLLNDEGTGLH----------PNCKVWRAPKGGRNR 246
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + F Q+++ R+MLPAI+FIF+
Sbjct: 247 RGPKTPRPPQPEAPPLGFVVAQMAE-----------------------REMLPAIYFIFS 283
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK-GLLKGVAAHHAGC 259
RRGCD AV+ L L+ E + ++ L F P+AVR+ LL+G+AAHHAG
Sbjct: 284 RRGCDKAVRDLGKVCLVSPQEQARIQARLDVFMAATPEAVRDGGHDDALLRGIAAHHAGV 343
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L +E Q
Sbjct: 344 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLMGSEFLQ 403
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL +
Sbjct: 404 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLLQRYE- 462
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +A++LVE+SFG Y+ +
Sbjct: 463 ------------------LSKAKELVERSFGRYLAT 480
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 9/189 (4%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
E LR + LD + +G T AA+RG+NELWL + L + L +L PA LAA+
Sbjct: 728 EILRFFGCLEGDEGLDPSE-----VGRTVAALRGDNELWLGLALMSGHLDELDPADLAAL 782
Query: 793 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 852
++ +E + LW S Y P ++ L R QE V +P + +
Sbjct: 783 LEAISTEVNRPDLW----SGYPPPPAADEAMHDLRGIRRELQRQQEAGKVVMPVWFEGEL 838
Query: 853 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 912
G+V AWA G++W +++ + +LD+GD+ R++RRT+DLLAQIP + ++L+ NA A
Sbjct: 839 MGLVHAWAKGVSWSDLIANTSLDEGDVVRIMRRTVDLLAQIPYCEAISEQLRTNARAALK 898
Query: 913 VMDRPPISE 921
++R P+ E
Sbjct: 899 AINRFPVRE 907
>gi|87301273|ref|ZP_01084114.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
gi|87284241|gb|EAQ76194.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
Length = 948
Score = 322 bits (824), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 241/422 (57%), Gaps = 55/422 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 149 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIERVHGP 208
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL+++G ++ K ++ R
Sbjct: 209 TTLVVSDHRPVPLAFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPKGER 256
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R F Q+++ RDMLPAI+FIF+
Sbjct: 257 RKGRSPKPPQPEAAPLPFVVAQMAE-----------------------RDMLPAIYFIFS 293
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RR CD AV+ L L++E E + + L F P+AVRE + L +G+AAHHAG
Sbjct: 294 RRACDKAVRDLGRVCLVNEAEQALIVARLDAFVAATPEAVREGGHAEALTRGIAAHHAGV 353
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E Q
Sbjct: 354 LPAWKELIEELFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHRPLMGSEFLQ 413
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D +G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 414 MAGRAGRRGLDVQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL----- 468
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
D L +A++LVE+SFG Y+ + ++ + + ++ + L
Sbjct: 469 ----QRYD----------LAKAKQLVERSFGRYLATLDLVEDETNIASLRAQLAQLAGPT 514
Query: 440 SD 441
+D
Sbjct: 515 AD 516
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W FL + ++ AL + P +G T AA+RG+NELWL + L + L +L PA+
Sbjct: 730 WDTFLALIEILRAFGAL-AGADGLEPTEVGRTVAALRGDNELWLGLALMSGHLDELNPAE 788
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + P ++ L R L QE+ V +P
Sbjct: 789 LAAVFEAISTEVNRPDLW----SGFPPPPRSEEALHDLSGLRRELLRHQERAHVVVPAWW 844
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L+ NA
Sbjct: 845 EPELMGLVHAWARGSSWNDVIANTSLDEGDIVRILRRTVDLLAQVPYAEAISEQLRSNAR 904
Query: 909 DASNVMDRPPISEL 922
A ++R P+SE
Sbjct: 905 KALQAINRFPVSEF 918
>gi|443325910|ref|ZP_21054583.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
gi|442794498|gb|ELS03912.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
Length = 966
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 275/999 (27%), Positives = 442/999 (44%), Gaps = 228/999 (22%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L ++D +VLDE HYL + RGTVWEE IIY P ++Q++ LSA
Sbjct: 114 FRNMLYETPIGQVGT--SLENLDAVVLDECHYLGNRGRGTVWEECIIYAPPQIQLVALSA 171
Query: 63 TVANADELAGWIGQIHGKT-------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 115
TV N +EL WI Q+ + +L+ S RPVPL ++F + + PLLD K +N
Sbjct: 172 TVGNPEELTDWIVQVRNQNNQRQYDCQLVNSDFRPVPLRYFFCDRNQMYPLLDSKQTKLN 231
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
KL + P K G R+R ++ +
Sbjct: 232 PKL---------KSLIP-KRGSKRKR-----------------------------LKLKE 252
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL 235
P L L+ +DMLPAI+ IF+RRGCD AV+ L++ +L+ E ++E L F +
Sbjct: 253 CPNTFRVLQELKVKDMLPAIYIIFSRRGCDRAVEQLDNISLVKAEEAQQIEGFLLHFFLD 312
Query: 236 YPDAVRE----------PAIKGLLKGVAAHHAGCLPIWKSFI-----------EELFQRG 274
+ + +++ P + L++ A + S++ E L +
Sbjct: 313 HNETLQQALLDHFTQDNPKLHSLIREYLAANNDAASNLSSYLTANPNQKYLLWEFLTAQS 372
Query: 275 LVKVVFATETLAAGIN------MPA------------------RTAVLSS---------- 300
+ + E L GI +PA TA L++
Sbjct: 373 QIIKIEQVEPLLRGIASHHAGLLPAWKELVERLFELGLVKIVFATATLAAGINMPARTTV 432
Query: 301 ---LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
LSKRT +G LT +E Q+AGRAGRRG D GHVV +QTP+EGA E L + E
Sbjct: 433 ISALSKRTDAGHGMLTPSEFLQIAGRAGRRGKDPVGHVVTLQTPFEGAPEAVYLATSSPE 492
Query: 358 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 417
PL+S+FT SYGMVLNLL SL E ++L+ +SF Y+
Sbjct: 493 PLMSRFTPSYGMVLNLL-------------------QKHSLNEVKELLAKSFAEYLAQKK 533
Query: 418 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 477
+ + + +I + L E++ ++S++ + ++E L E R L
Sbjct: 534 LAPEQQAIAEITTQMAKLDVELA----------MISQSDFASYQKIKERLHEESRLFDTL 583
Query: 478 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 537
+++ E R +K ++ G + + L+ K V + AV + K S + N+
Sbjct: 584 KQQAEASRKKEIKPLIAMLSPGRI--VGLKGKHIR-VSSPLAAVLVTKVPG--SGQADNL 638
Query: 538 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 597
V LGSDN WY I +
Sbjct: 639 ------------------------------VCLGSDNNWYVAANADITDI---------- 658
Query: 598 AQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDE 657
+G+ +E S+LL E +L + GG E S + +L+ ++ + + E
Sbjct: 659 NEGEVPLQELESVLLPHLEK--PRLGKLQLGG----ETS-AIVAHNLSSYIIPQ-APAPE 710
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE----KIKRLK 713
V+ EQ+ K+ ++++++ +YK + +K ++ + K K
Sbjct: 711 VI--------------EQQQKIEQIEERL-DAHPLNQYKNLNQLLKKQQKRDFLRNKLHK 755
Query: 714 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 773
+++K ++ Q W++FL + V+ E ALD LG+ AA IRG+NELWLA
Sbjct: 756 SQTKYQKHKLNQ--SYYWEDFLNLIKVLQEFSALDGYNPTA--LGQAAATIRGDNELWLA 811
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-------- 825
+ R+ L +L P LAA ++LV+E + +W Y P+ V+ + +
Sbjct: 812 IAFRSGELDNLAPHHLAAAVSALVTETPRGDIWCE----YAPAPEVLEALGIQRRQPEQE 867
Query: 826 -----LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
L E R ++Q ++GV P + + G+ E WA G+ W E+ + L +GD+
Sbjct: 868 ATTSTLRELRPHLFQVQHRYGVGCPIWREYELVGLAENWALGVEWNELCDNTNLAEGDIV 927
Query: 881 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
R+LRRTID+L QIP++P + L NA DA + M R PI
Sbjct: 928 RMLRRTIDVLLQIPQIPYIPSGLVNNARDAVSAMKRFPI 966
>gi|33863754|ref|NP_895314.1| DNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33635337|emb|CAE21662.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313]
Length = 924
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 238/402 (59%), Gaps = 59/402 (14%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
++ L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI +
Sbjct: 133 ADDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPASVQLVALSATVANAGQLTDWIER 192
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYK 134
+HG T+L+ S RPVPL + F + L PLL++ GK H N K+ ++
Sbjct: 193 VHGPTQLVFSDYRPVPLQFSFCSAKGLHPLLNDAGKGLHPNSKV--------------WR 238
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
+R R F Q+++ R+MLPA
Sbjct: 239 APKGHKRKGRSPKPPQPEPPPIKFVIAQMAE-----------------------REMLPA 275
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVA 253
I+FIF+RRGCD +V+ L L+ + ++ L+ + P+AVR+ LL+G+A
Sbjct: 276 IYFIFSRRGCDKSVKDLGSQCLVSPTQQEQIRQRLRTYSETNPEAVRDGIHADALLRGIA 335
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L
Sbjct: 336 AHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLM 395
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
+E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNL
Sbjct: 396 GSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNL 455
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L + D+K +AR+LVE+SFG Y+ S
Sbjct: 456 L----------QRHDLK---------KARELVERSFGRYLAS 478
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 6/191 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W+ FL + ++ LD +G T AA+RG+NELWL + L + L DL PA LA
Sbjct: 718 WETFLSLIEILQHFGCLDDLEPT--EIGRTVAAMRGDNELWLGLSLMSGHLDDLHPANLA 775
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ +E + LW S Y P + ++ L R L QE+ V +P +
Sbjct: 776 AVFEAISTEVNRPDLW----SGYPPPASAEEALHDLAGIRRELLRAQERCQVVVPAWWEP 831
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L++NA A
Sbjct: 832 ELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQVPYCEAISEQLRRNARLA 891
Query: 911 SNVMDRPPISE 921
++R P+ E
Sbjct: 892 LKAINRFPVCE 902
>gi|159904128|ref|YP_001551472.1| DNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159889304|gb|ABX09518.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9211]
Length = 924
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 185/458 (40%), Positives = 263/458 (57%), Gaps = 70/458 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI ++HG
Sbjct: 137 LIDVETVVLDECHYMNDSQRGTVWEESIIHCPSSIQLVALSATVANAGQLTDWIQEVHGP 196
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
TEL+ S RPVPL + F + L PLL++ G ++ K ++ R
Sbjct: 197 TELVFSDFRPVPLEFSFCSAKGLHPLLNDAGTGLH------------PNCKVWRPPKGHR 244
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R S+ ++ + P + + ++ R MLPAI+FIF+
Sbjct: 245 RKGR----------------------SVKPLQ-PEAPSIKFVVSNIAERSMLPAIYFIFS 281
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 259
RRGCD AV L L++ E ++ L+ + L +AVR+ + L +G+A+HHAG
Sbjct: 282 RRGCDKAVNDLGSVCLVNPEEKQRIQARLRSYIQLNSEAVRDGIHVDSLTRGIASHHAGV 341
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GL+KVVFATETL+AGINMPAR+ V+S LSKRT +G QL +E Q
Sbjct: 342 LPAWKELIEELFQQGLIKVVFATETLSAGINMPARSTVISVLSKRTENGHRQLMGSEFLQ 401
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PL+SQFT SYGMVLNLL
Sbjct: 402 MAGRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSAADPLISQFTPSYGMVLNLL----- 456
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS-------NVMLAAKDELCKIQKET 432
+ DM E++R+L+E+SFG Y+ S ++ +D+L K+Q
Sbjct: 457 -----QRYDM---------EKSRELIERSFGRYLASLDLVDDEELVDQLRDQLGKLQGIA 502
Query: 433 DVLTSEISDDAIDRKSR--------RLLSEAAYKEMAN 462
+ +D RK R R+L + A + +A+
Sbjct: 503 GDIPWNDFEDYEKRKGRLKEERRLLRILQQQAAETLAH 540
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 8/192 (4%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ F+ + ++ LD ++ I G T A+IRG+NELW+ + L + L +L+PA L
Sbjct: 718 WETFVSLLEILQYFGCLDEVDATEI---GRTIASIRGDNELWIGLALMSGHLDELQPAAL 774
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + +E + LW + I P +T N L R QE+ ++IP C
Sbjct: 775 AGVLEGISTEVNRPDLW--SGFISSPQST--EAFNDLSGIRRELNSHQERCQIDIPICWS 830
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+ G+VEAW G++W E++ + +LD+GD+ R++RRTIDLL+QIP + ++L+ NA
Sbjct: 831 PELMGLVEAWGHGVSWSELIANTSLDEGDVVRIIRRTIDLLSQIPHCEAISKQLRDNARL 890
Query: 910 ASNVMDRPPISE 921
A ++R P+ E
Sbjct: 891 ALKAINRFPVCE 902
>gi|88807355|ref|ZP_01122867.1| putative DNA helicase [Synechococcus sp. WH 7805]
gi|88788569|gb|EAR19724.1| putative DNA helicase [Synechococcus sp. WH 7805]
Length = 924
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 236/400 (59%), Gaps = 55/400 (13%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
S+ L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI +
Sbjct: 132 SDDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPLPVQLVALSATVANAGQLTDWIER 191
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
+HG T L+ S RPVPL + F + L PLL+++G ++ K ++
Sbjct: 192 VHGPTHLVHSDFRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAP 239
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
+R R SF Q+++ R+MLPAI+
Sbjct: 240 KGNKRKGRSQRPPQPEPPPISFVVAQMAE-----------------------REMLPAIY 276
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAH 255
FIF+RRGCD AV+ L L++E E + + K + P+AVR+ LL+G+AAH
Sbjct: 277 FIFSRRGCDKAVRDLGVQCLVNESEQACIRERFKAYAAANPEAVRDGLHADALLRGIAAH 336
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP WK +EELFQ+GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L ++
Sbjct: 337 HAGVLPAWKELVEELFQQGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMAS 396
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 397 EFLQMAGRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL- 455
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +AR+LVE+SFG Y+ S
Sbjct: 456 ------------------QRHDLAKARELVERSFGRYLAS 477
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 115/193 (59%), Gaps = 10/193 (5%)
Query: 731 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W+ FL + ++ ALD + T++ G T AA+RG+NELWL + L + L DL PA+
Sbjct: 717 WETFLALMEILQHFGALDDLVPTEI----GRTVAALRGDNELWLGLALMSGHLDDLPPAE 772
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + P ++ L R L +QE+H V +P
Sbjct: 773 LAAVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLSGIRRELLRVQERHQVVVPAWW 828
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L+ +A
Sbjct: 829 EPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQVPYCEAISEQLRSHAR 888
Query: 909 DASNVMDRPPISE 921
A ++R P++E
Sbjct: 889 QALKAINRFPVAE 901
>gi|254430185|ref|ZP_05043888.1| DSHCT domain family [Cyanobium sp. PCC 7001]
gi|197624638|gb|EDY37197.1| DSHCT domain family [Cyanobium sp. PCC 7001]
Length = 849
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 231/397 (58%), Gaps = 57/397 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI ++HG
Sbjct: 72 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSIQLVALSATVANAGQLTDWIDRVHGP 131
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGS 138
T LI S RPVPL + F + L PLL++ G H N K+ G
Sbjct: 132 TRLIYSDHRPVPLDFSFCSAKGLHPLLNDAGTDLHPNCKVW-------------RAPKGH 178
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR+ + +F QL++ RDMLPAI+FI
Sbjct: 179 RRKGPKTPKPPQPEAPPLAFVIAQLAE-----------------------RDMLPAIYFI 215
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258
F+RRGCD V+ L +L+ E + L+ F + +AVR+ + LL+G+A+HHAG
Sbjct: 216 FSRRGCDRGVRDLGKVSLVSAEEQERIRAKLEAFTEVSSEAVRDGHAEPLLRGIASHHAG 275
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP WK IE+LFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E
Sbjct: 276 VLPAWKELIEDLFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHRPLMGSEFL 335
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D++G+VV VQ+ +EG E +L A +PL SQFT SYGMVLNLL
Sbjct: 336 QMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLALAPADPLASQFTPSYGMVLNLL---- 391
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +AR+LVE+SFG Y+ +
Sbjct: 392 ---------------QRYDLPKARELVERSFGRYLAT 413
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 706 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP--LGETAAA 763
EE+ + L RS R W F+ + V+ AL + P +G T AA
Sbjct: 639 EERQRLLHFRSNR-----------HWDTFMALIEVLRHFGAL-AGEDGLEPTDVGRTVAA 686
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+RG+NELWL + L L L PA+LA+V ++ +E + LW + P V +
Sbjct: 687 LRGDNELWLGLALMTGHLDALTPAELASVLEAISTEVNRPDLW----CAWAPPAAVEEAL 742
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ L R Q+ GV P + + +G+V AWASG +W E+M + +LD+GD+ R++
Sbjct: 743 HDLRSLRREIARQQDNAGVAFPIWWEPELTGLVHAWASGTSWSEVMANTSLDEGDVVRVM 802
Query: 884 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
RRT+DLL+Q+P V Q+L+ +A A ++R P+ EL
Sbjct: 803 RRTVDLLSQVPYCEAVTQQLRDHARLALKSINRFPVCEL 841
>gi|427704263|ref|YP_007047485.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
gi|427347431|gb|AFY30144.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
Length = 943
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 180/398 (45%), Positives = 233/398 (58%), Gaps = 58/398 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 152 LADVEAVVLDECHYMNDTQRGTVWEESIIHCPSRVQLVALSATVANAGQLTDWIERVHGP 211
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGS 138
T LI S RPVPL + F + L PLL+++G H N K+ +P K +
Sbjct: 212 TRLIHSDFRPVPLAFSFCSAKGLHPLLNDEGTGLHPNCKV-----------WRPPKS--T 258
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR+ ++ F Q+++ R+MLPAI+FI
Sbjct: 259 RRKGPKEPRPPQPEAPPIGFVVAQMAE-----------------------REMLPAIYFI 295
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHA 257
F+RR CD +V+ L L++ E + + L F + P+AVRE LL+G+AAHHA
Sbjct: 296 FSRRNCDRSVRDLAKVCLVNPEEQARIRRRLDAFMAVTPEAVREGGHADALLRGIAAHHA 355
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK IEELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E
Sbjct: 356 GVLPAWKELIEELFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHRPLMGSEF 415
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D +G+VV VQ+ +EG E L + +PLVSQFT SYGMVLNLL
Sbjct: 416 LQMAGRAGRRGLDTQGYVVTVQSRFEGVREAGALATSPADPLVSQFTPSYGMVLNLL--- 472
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L +AR+LVE+SFG Y+
Sbjct: 473 ----------------QRYDLAKARELVERSFGRYLAG 494
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W FL + +++ ALD + + P +G T AA+RG+NELWL + L + L L PA+
Sbjct: 734 WDTFLSLIDILRFFGALD-GEEGLEPTEVGRTVAALRGDNELWLGLALMSGHLDALDPAE 792
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW Y P ++ L R QE+ V +P
Sbjct: 793 LAAVLEAISTEVNRPDLWCG----YPPPPASEEALHDLRSLRRELQRQQERASVVVPVWW 848
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + +G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQIP + ++L++N+
Sbjct: 849 EPELTGLVHAWARGASWNDVIANTSLDEGDVVRILRRTVDLLAQIPYCEAISEQLRRNSR 908
Query: 909 DASNVMDRPPISEL 922
A ++R P+ E+
Sbjct: 909 MALKAINRFPVCEI 922
>gi|124022170|ref|YP_001016477.1| DNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962456|gb|ABM77212.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9303]
Length = 924
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 237/402 (58%), Gaps = 59/402 (14%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
++ L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI +
Sbjct: 133 ADDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPASVQLVALSATVANAGQLTDWIER 192
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYK 134
+HG T+L+ S RPVPL + F + L PLL++ G H N K+ ++
Sbjct: 193 VHGPTQLVFSDYRPVPLQFSFCSAKGLHPLLNDAGTGLHPNSKV--------------WR 238
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
+R R F Q+++ R+MLPA
Sbjct: 239 APKGHKRKGRSPKPPQPEPPPIRFVIAQMAE-----------------------REMLPA 275
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVA 253
I+FIF+RRGCD +V+ L L+ + ++ L+ + P+AVR+ LL+G+A
Sbjct: 276 IYFIFSRRGCDKSVKDLGSQCLVSPTQQEQIRQRLRTYSETNPEAVRDGIHADALLRGIA 335
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L
Sbjct: 336 AHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLM 395
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
+E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNL
Sbjct: 396 GSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNL 455
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
L + D+K +AR+LVE+SFG Y+ S
Sbjct: 456 L----------QRHDLK---------KARELVERSFGRYLAS 478
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 109/192 (56%), Gaps = 8/192 (4%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ FL + ++ LD ++ I G T AA+RG+NELWL + L + L DL PA L
Sbjct: 718 WETFLSLIEILQHFGCLDDLDPTEI---GRTVAAMRGDNELWLGLALMSGHLDDLHPANL 774
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAV ++ +E + LW S Y P + ++ L R L QE V +P +
Sbjct: 775 AAVFEAISTEVNRPDLW----SGYPPPASAEEALHDLAGIRRELLRAQEHCHVVVPAWWE 830
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+ G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L++NA
Sbjct: 831 PELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQVPYCEAISEQLRRNARL 890
Query: 910 ASNVMDRPPISE 921
A ++R P+ E
Sbjct: 891 ALKAINRFPVCE 902
>gi|33241070|ref|NP_876012.1| superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33238599|gb|AAQ00665.1| Superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 925
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 188/460 (40%), Positives = 260/460 (56%), Gaps = 74/460 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 133 LDEVETVVLDECHYMNDSQRGTVWEESIIHCPSSVQLVALSATVANAGQLTDWIQKVHGP 192
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
T+LI S RPVPL + F + L PLL+E G H N K+ ++
Sbjct: 193 TKLIFSDFRPVPLNFNFCSAKGLHPLLNESRTGLHPNCKV--------------WRPPKG 238
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
++R SR + + + SF ++++ R+MLPAI+FI
Sbjct: 239 QKRKSRSNKPLQPDAPPISFVIEKMAE-----------------------REMLPAIYFI 275
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHA 257
F+RRGCD AV+ L +L+ E +E L + P+ VR + L +G+A+HHA
Sbjct: 276 FSRRGCDKAVKDLGKVDLVSIKEKRIIETRLNTYLKENPEGVRHGIHVDALKRGIASHHA 335
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK IEELFQ+ LVK VFATETLAAGINMPAR+ V+SSLSKRT +G QL +E
Sbjct: 336 GVLPAWKELIEELFQKSLVKTVFATETLAAGINMPARSTVISSLSKRTENGHRQLMGSEF 395
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D++G VV VQ+ +EG E +L + PL+SQFT SYGMVLNLL
Sbjct: 396 LQMAGRAGRRGLDSQGDVVTVQSRFEGVREAGQLATSAANPLISQFTPSYGMVLNLLQRY 455
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS-------NVMLAAKDELCKIQ- 429
LE++R+LV++SFG Y+ S ++ +D+L K+Q
Sbjct: 456 -------------------DLEKSRELVQRSFGCYLASLDLFDDEELLDQLRDQLGKLQS 496
Query: 430 -------KETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 462
+E +V + S +R+ R+L + A + N
Sbjct: 497 IAGDVPWREFEVYEKQRSRLKEERRLLRILQKQAADTLMN 536
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 112/191 (58%), Gaps = 6/191 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W FL + ++ LD +G+T +A+RG+NELWL + L + L +L P+ LA
Sbjct: 714 WDTFLLLMEILQYFGCLDELDHT--DIGKTVSALRGDNELWLGLALMSGHLDELSPSSLA 771
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ +E + LW S + PS + +N L R L QE+ +EIP +
Sbjct: 772 AVLQAISTETNRHDLW----SGFSPSPESMEALNDLSGIRRELLRSQEQLKLEIPVWSEP 827
Query: 851 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ G+VE WA+G+TW +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L++NA A
Sbjct: 828 ELMGLVEKWANGITWSDLIANTSLDEGDVVRIMRRTIDLLAQLPYCVAISKQLKRNAAIA 887
Query: 911 SNVMDRPPISE 921
++R P+ E
Sbjct: 888 LKGLNRFPVRE 898
>gi|159902421|gb|ABX10810.1| putative helicase [Glycine max]
gi|159902425|gb|ABX10812.1| putative helicase [Glycine soja]
Length = 184
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/184 (81%), Positives = 162/184 (88%)
Query: 697 KIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 756
KI+D VKFTEEKIKRLK RSKRL RIEQIEPSGWKEF+++SNVIHE RALDINT +IFP
Sbjct: 1 KIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHIIFP 60
Query: 757 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
LGETAAAIRGENELWLAMVLRNKILL+LKPAQLAAVCASLVS GIKVR KNNS IYEPS
Sbjct: 61 LGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPS 120
Query: 817 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
TV I +LDE RS+ L +Q+KH V I CCLDSQF GMVEAWASGLTWRE+MMDCA+DD
Sbjct: 121 ATVTKFITLLDEQRSALLAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDD 180
Query: 877 GDLA 880
GDLA
Sbjct: 181 GDLA 184
>gi|260434531|ref|ZP_05788501.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
gi|260412405|gb|EEX05701.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
Length = 803
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/422 (42%), Positives = 240/422 (56%), Gaps = 55/422 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 140 LADVEAVVLDECHYMNDSQRGTVWEESIIHCPPTVQLVALSATVANAGQLTDWIEKVHGP 199
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL+E G ++ K ++ +
Sbjct: 200 TTLVMSDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGHK 247
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R SF Q+++ R MLPAI+FIF+
Sbjct: 248 RKGRSQRPPQPEPPPISFVVAQMAE-----------------------RQMLPAIYFIFS 284
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RR CD AV+ L L+ + E + ++ L + P+AVR+ LL+G+AAHHAG
Sbjct: 285 RRSCDKAVRDLGVQCLVTQEEQARIKERLTAYSHDNPEAVRDGIHADALLRGIAAHHAGV 344
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L +E Q
Sbjct: 345 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMGSEFLQ 404
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 405 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL----- 459
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
L +AR+LVE+SFG Y+ ++ ++ L +++ + L
Sbjct: 460 --------------QRHDLAKARELVERSFGRYLAGLDLVEDEENLSQLRLQLSQLEGVA 505
Query: 440 SD 441
D
Sbjct: 506 GD 507
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 786
W+ FL + ++ LD ++ I G T AA+RG+NELWL + L + L DL P
Sbjct: 721 WETFLALMEILQHFGCLDELDPTEI---GRTVAALRGDNELWLGLALMSGHLDDLSP 774
>gi|428204590|ref|YP_007083179.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427982022|gb|AFY79622.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
Length = 987
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 232/704 (32%), Positives = 334/704 (47%), Gaps = 136/704 (19%)
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+R ++ L +G+AAHHAG LP+WK +E+LF++GLVKVVFAT TL+AGINMPART V+S
Sbjct: 396 IRFDQLEPLTRGIAAHHAGILPVWKELVEQLFEQGLVKVVFATATLSAGINMPARTTVIS 455
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+LS+RT G LT +E Q+AGRAGRRG D G+VV VQTP+EGA+E L A EPL
Sbjct: 456 ALSRRTDDGHSMLTPSEFLQLAGRAGRRGKDEVGYVVTVQTPFEGAKEAAYLATAKAEPL 515
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
S FT SYGMVLNLL +LEEA++L+E+SF Y+ + +
Sbjct: 516 KSCFTPSYGMVLNLL-------------------QKHTLEEAKELLERSFAEYLAQSKLA 556
Query: 420 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
K + ++ E + E++ L + + A L+E LK E+R L++
Sbjct: 557 PEKKAIAELTTELAKIDVELAG----------LDDRDFASYAKLKERLKEEERLLKILQQ 606
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 539
+ E + + L + G L L ++ K + V + AV++ K
Sbjct: 607 QAEANKKHEIASRLAELSPGSL--LAIKGKHVK-VASPLSAVFVAKIP------------ 651
Query: 540 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQ 599
+G D V LG DN WY T I + P + L Q
Sbjct: 652 ------------GSGQAPD--------LVCLGEDNRWYIVTLADITDI----LPAI-LPQ 686
Query: 600 GDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 659
G L + LL+ ++ G W
Sbjct: 687 GAQLSVPELEALLE--------VSSYHHCGPW---------------------------- 710
Query: 660 HMSFEYHDAVENYKEQR--TKVARLKKKIARTEGFKEYKKIVDTVKFTEEK--IKRLKAR 715
H E A+ +R A + IA+ E + +D ++K + LK
Sbjct: 711 HKGDEKTAAIAQQITRRLDATAATAPEVIAQQERIDRVRANLDNHPLQQQKNPARLLKLH 770
Query: 716 SKRLTKRIEQIEPSG-------------WKEFLRISNVIHETRALDINTQVIFPLGETAA 762
+RLT R EQ+ S W++FL + ++ E RALD V PLG+ AA
Sbjct: 771 QRRLTIR-EQLYRSHAKYQNQQAHKSYYWQDFLNLIEILREFRALD--GLVPTPLGQAAA 827
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
IRGENELWL + L + L+P QLAA ++L++E ++ W N Y PS V+
Sbjct: 828 TIRGENELWLGLALMSGAFDRLEPHQLAAAMSALITEPLRPDTWTN----YPPSQEVLEA 883
Query: 823 INV-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 875
L E R + Q ++ + IP LD+Q G++E W G+ W E+ + +LD
Sbjct: 884 FRKTESQEIGLREIRRQLYQAQARYDIAIPVWLDTQLMGLIEQWVLGIDWNELCDNTSLD 943
Query: 876 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
+GD+ RLLRRTIDLL QIP++P V L+ A A ++M R P+
Sbjct: 944 EGDIVRLLRRTIDLLWQIPQIPGVPISLKSQARVAVSMMKRFPV 987
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 115/236 (48%), Gaps = 56/236 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSA
Sbjct: 131 FRNILYETPIGQVGT--SLENVESVVLDECHYISDRGRGTVWEESIIYCPPTIQLVALSA 188
Query: 63 TVANADELAGWIGQI--------HGKT-----ELITSSRRPVPLTWYFSTKTALLPLLDE 109
T+ N +EL WI ++ +GK LI S RPVPL ++FSTK L PLL+
Sbjct: 189 TIGNPEELTDWIERVRLAAGSKENGKQVIYHCALIDSDYRPVPLRFFFSTKEKLYPLLNS 248
Query: 110 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
K +N L + + +
Sbjct: 249 KQTAINPSL-----------------------------------------KSKSPREEKR 267
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 225
RR P ++ + L RD+LPAI+ IF+RRGCD AV+ LED L++E E +
Sbjct: 268 RRRREDCPSILTVVEQLVERDLLPAIYAIFSRRGCDQAVRELEDLVLVNESEAKAI 323
>gi|78213558|ref|YP_382337.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78198017|gb|ABB35782.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 924
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 173/410 (42%), Positives = 236/410 (57%), Gaps = 55/410 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV+ +VLDE HY++D RGTVWEE II+ P VQ++ LSATVANA +L WI ++HG
Sbjct: 140 LTDVEAVVLDECHYMNDSQRGTVWEESIIHSPPTVQLVALSATVANAGQLTDWIDKVHGP 199
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T L+ S RPVPL + F + L PLL++ G ++ K ++ +
Sbjct: 200 TTLVMSDHRPVPLQFSFCSAKGLHPLLNDAGTGLH------------PNCKVWRAPKGHK 247
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R +F Q+++ R MLP I+FIF+
Sbjct: 248 RKGRSQRPTQPEPPPITFVVAQMAE-----------------------RQMLPGIYFIFS 284
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 259
RRGCD AV+ L L+ + E + ++ L + P+AVR+ LL+G+AAHHAG
Sbjct: 285 RRGCDKAVRDLGVQCLVSKQEQARIKARLTAYSNDNPEAVRDGIHADALLRGIAAHHAGV 344
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++++SKRT G L +E Q
Sbjct: 345 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIAAMSKRTERGHRPLMGSEFLQ 404
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 405 MAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVLNLL----- 459
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
L +AR+LVE+SFG Y+ ++ +D L +++
Sbjct: 460 --------------QRHDLAKARELVERSFGRYLAGLDLVEDEDNLSQLR 495
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 110/192 (57%), Gaps = 8/192 (4%)
Query: 731 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
W+ FL + +++ LD ++ I G T AA+RG+NELWL + L + L DL P L
Sbjct: 721 WETFLALMDILQHFGCLDELDPTEI---GRTVAALRGDNELWLGLALMSGHLDDLSPPDL 777
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AAV ++ +E + LW S + P + L R L QE+ GV +P +
Sbjct: 778 AAVFEAISTEVNRPDLW----SGFPPPAAAEEALQDLSGLRRELLRAQERAGVVVPAWWE 833
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 909
+ G+V+AWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 PELMGLVDAWARGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQ 893
Query: 910 ASNVMDRPPISE 921
A ++R P++E
Sbjct: 894 ALKAINRFPVAE 905
>gi|384251766|gb|EIE25243.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 561
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 174/406 (42%), Positives = 236/406 (58%), Gaps = 43/406 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV +IVLDEVHYL D SRG+VWEE+II CP ++Q+ +SATVANAD+L WI ++HG
Sbjct: 152 LNDVGLIVLDEVHYLGDPSRGSVWEEVIINCPPQIQLCAMSATVANADDLGAWIDEVHGS 211
Query: 81 TELITSSRRPVPLTWYFS----TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
E + + RPVPL W+F T LLPL KG+ +N L E + Y
Sbjct: 212 CETVVTRYRPVPLEWHFGFAAGGSTHLLPLFGSKGRALNSALR-------RPEPEKYMGV 264
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
R + + A+ N G+ L + R + + +V+ +L S+ MLPAI+
Sbjct: 265 DWGRWDHMRSANEN--------GEVTLQYDEPRWKRMAPLEEVVMSL---ASKAMLPAIY 313
Query: 197 FIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254
FIF+R CD A L + +L E + L+ R P+AV+E + L+KG A+
Sbjct: 314 FIFSRAACDEAALMLDKQGVSLTTPDEQMLILYELESLRADQPEAVKENLVAALVKGFAS 373
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LP WK +E LFQ+G++KVVFATETLAAGINMPAR+ ++S+LS+R G LT
Sbjct: 374 HHAGLLPGWKGIVESLFQQGVLKVVFATETLAAGINMPARSTIISTLSRRKDQGIQMLTH 433
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
NEL QMAGRAGRRG D G+ V++Q+ +E E+ ++ G E L SQF YGMVLNLL
Sbjct: 434 NELLQMAGRAGRRGYDTTGNCVVLQSRFEDPEDVHGIIMRGPEALQSQFATGYGMVLNLL 493
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
RSL EAR +++SF NY+G+ ++ A
Sbjct: 494 -------------------HSRSLAEARAFIQRSFSNYLGALLLPA 520
>gi|159462656|ref|XP_001689558.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
gi|158283546|gb|EDP09296.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
Length = 485
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 224/395 (56%), Gaps = 58/395 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V +IVLDEVHYL D RG+VWEE+II CP+ +Q++C+SATVAN +L WI + H
Sbjct: 123 LGNVGLIVLDEVHYLGDPHRGSVWEEVIINCPRHIQLLCMSATVANPKDLGDWIAKEHMP 182
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
E I + RPVPL W+F+ A KG M L V + GS
Sbjct: 183 CETIQTRFRPVPLHWHFAYFKA------PKGVSMEDLL---------VPVNSARGRGSGD 227
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
RN K +M ++P + T+ L R+MLPAIWFI +
Sbjct: 228 RNGDKGLNMR------------------------RIPDMHKTIKVLAEREMLPAIWFILS 263
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 260
RR CD++ L D S + + R P+AV+E + L+ G+A+HHAG L
Sbjct: 264 RRDCDSSAARAAAVPLTDPETQSLIAAEVAALRADQPEAVKEELVPALISGIASHHAGQL 323
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 320
P WKS +E LFQRGL+K+VFAT TLAAGINMPART V+SSLS+ T G L NEL QM
Sbjct: 324 PGWKSLVERLFQRGLLKLVFATGTLAAGINMPARTTVVSSLSRMTDDGPKLLPHNELLQM 383
Query: 321 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 380
AGRAGRRG D G+ +++Q +EGA+E +++ AG EPL SQF+ SYG+VLNLL
Sbjct: 384 AGRAGRRGFDTEGNCLVLQNKFEGADEAWQIIHAGPEPLTSQFSVSYGLVLNLL------ 437
Query: 381 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+ +LE+AR+ V +SFGN++ +
Sbjct: 438 -------------SVNTLEQAREFVSRSFGNFLAT 459
>gi|434396648|ref|YP_007130652.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
gi|428267745|gb|AFZ33686.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
Length = 977
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 194/568 (34%), Positives = 279/568 (49%), Gaps = 136/568 (23%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V +VLDE HYLSD RGTVWEE IIYCP ++Q++ LSA
Sbjct: 117 FRNMLYETPIGEVGT--SLENVAAVVLDECHYLSDRGRGTVWEESIIYCPTQIQLVALSA 174
Query: 63 TVANADELAGWIGQIHGKT-----------ELITSSRRPVPLTWYFSTKTALLPLLDEKG 111
T+ NA+E WI ++ T EL+ S RPVPL +YFS + L PLL+ +
Sbjct: 175 TIGNAEEFTDWINRVRSDTAIKTKEPVISCELVNSDFRPVPLRFYFSNRKGLFPLLNAQQ 234
Query: 112 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+N K L SE + GG+ RR SKN
Sbjct: 235 TKLNPK-------LKASEKTSREKGGNSRR----------------------SKN----- 260
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 231
+ P +I T+ L+++DMLPAI+ IF+RRGCD AV L++ NL+ E ++E L +
Sbjct: 261 --RECPSIIQTIQQLQAKDMLPAIYIIFSRRGCDQAVNNLDNLNLVTPEEAQQIEAILLQ 318
Query: 232 F---------RILYPDAVR-EPAIKGLLKG-VAAHHAGCLPIWKSF-------------- 266
F +IL + P +K LL G +AA+ +W F
Sbjct: 319 FILSENLELQQILLQTLEQSNPHLKSLLWGYLAANPNAANDLWNYFANHPNEKYLLFQLL 378
Query: 267 ---------------------------------IEELFQRGLVKVVFATETLAAGINMPA 293
+E LF+ GLVK+VFAT TLAAGINMPA
Sbjct: 379 AQLSQVLRIEQIEPLTRGIASHHAGLLPVWKELVERLFELGLVKIVFATATLAAGINMPA 438
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+S+LSKRT G LT +E Q+AGRAGRRG D G+VV QTP+EGA+E L
Sbjct: 439 RTTVISALSKRTDDGHSMLTPSEFLQIAGRAGRRGKDEVGYVVTTQTPFEGAKEAAYLAT 498
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
+ EPL S FT SYGMVLNLL ++ E ++L+E+SF Y+
Sbjct: 499 SQAEPLRSWFTPSYGMVLNLL-------------------QKHTITEIKELLERSFAEYL 539
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
A+ L Q+ + T+E++ ++ + +Y++ +++ LK E R
Sbjct: 540 -------ARKRLAPEQQAIAIYTTELTKLDVELAPIPIGQFTSYEK---IRDRLKEEHRL 589
Query: 474 RTELRRRMELKRFSALKDILKDFENGHL 501
L+++ E R +A+K ++ D + G +
Sbjct: 590 LDILQQQAEAVRKNAIKPLIPDIQPGRI 617
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W EFL + V+ E +AL+ T LG+ AA IRG+NELWLA+ + L L+P QLA
Sbjct: 781 WDEFLSLIKVLQEFQALEEYTPTA--LGQAAATIRGDNELWLALAFLSGELEVLEPPQLA 838
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI--------------NVLDEHRSSFLEL 836
A +L++E + +W + + P V+ + ++L E R ++
Sbjct: 839 AAVCALITETPRGDVWCD----FPPPPEVLEALGIKKRQDANKSAKTSILREIRPHLFQV 894
Query: 837 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 896
Q ++GV +P + + G+ + W G+ W E+ LD+GD+ R+LRRT+D+L QIP++
Sbjct: 895 QHRYGVGLPIWREYELIGLAQQWVLGIEWNELCDSTNLDEGDIVRMLRRTLDVLWQIPQM 954
Query: 897 PDVDQRLQKNAVDASNVMDRPPI 919
P L NA + +M R PI
Sbjct: 955 PHASSTLVNNAQEGIAMMKRFPI 977
>gi|307109951|gb|EFN58188.1| hypothetical protein CHLNCDRAFT_142028 [Chlorella variabilis]
Length = 1267
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 239/798 (29%), Positives = 350/798 (43%), Gaps = 138/798 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DV ++VLDEVHYL D RG+VWEE+II P ++++ +SATV N ++L GWI Q+HG
Sbjct: 308 LKDVGLVVLDEVHYLGDPGRGSVWEEVIINLPPHIKLLSMSATVRNPEDLGGWISQVHGA 367
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY------- 133
+ I +S RPVPLTW+F P D+ G L L S + P
Sbjct: 368 CDTIRTSFRPVPLTWHFCHAQ---PAADDAGPAPPPARLLPLLDDSRRRINPALLPPGKR 424
Query: 134 -----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQVIDTLWH- 185
G R + + +G+ K ++R + V V+D WH
Sbjct: 425 YMFEESSGTPEARRAAAGRLWKARPSPDGWGRWDGLKKGKVSLRTVEELVGAVMDDDWHS 484
Query: 186 ----------------LRSRDMLPAIWFIFNRRGCDAAVQYLED---------------- 213
L +R MLPAIWFIF+RR CD A ++LE
Sbjct: 485 LPRWKRIPSLEAVALALEARAMLPAIWFIFSRRECDLAARHLEIHGAALTSPEGKKRRPP 544
Query: 214 -------------CNLLDECEMS----EVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256
N L +++ L P+AV+ ++ LL+GVA+HH
Sbjct: 545 VPSRLAGYPAGWLANWLAAASGGISRQQIQWELDALAAEQPEAVKGGFVEALLRGVASHH 604
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AGCLP WK +E LFQRGL+K+VFATETLAAGINMPART ++++LS+R G L NE
Sbjct: 605 AGCLPAWKGLVERLFQRGLLKLVFATETLAAGINMPARTTLVAALSRRRGGGIGSLQHNE 664
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
L QMAGRAGRRG D G V++Q+ +E + ++ G EPL SQF+ YGMVLNLL
Sbjct: 665 LLQMAGRAGRRGYDTTGSCVVLQSKWEDPDVAWDIIRRGPEPLRSQFSTGYGMVLNLL-- 722
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 436
R L EAR +++SF Y+ S + A+ L + + +
Sbjct: 723 -----------------YTRPLAEARAFLDRSFSRYLAS---IGAQRRLAEAGR-LEARA 761
Query: 437 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 496
+E+ D R +E + + LQ LK EKR LR ++ +R +A + L+
Sbjct: 762 AEVMGDMARRAGISEQAEGLWAKYQKLQGRLKEEKRAAKLLRAQLADERAAAAELALERL 821
Query: 497 ENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDD 556
L L L + ++ +PA+ L + SS + + + D
Sbjct: 822 SLPRLVGLDLSASNLADSDYRLPALLLCNLER-GSSGVWVLEAGPD-------------- 866
Query: 557 YDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGE 616
Y+ LG+DN Y + I + P A+ A L + E
Sbjct: 867 ----------YLCLGADNKLYQVGARHINGIAPGPHPVANDAEACAGVMRHAQALRSRSE 916
Query: 617 MLWEKLADSEFGG-LWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQ 675
+ L SE G + C EGS+ T V S L +++ + + + + Q
Sbjct: 917 LGSWSLGWSELSGDVGCAEGSVVT------ALVASKLLLPADLVPL-LPSPEGLAALEGQ 969
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 735
R +V + K V+ +K K L R+ L +E+ S W+ F
Sbjct: 970 RQRV-------------RAVKAQVNEIKAA--KAATLLERAAVLRTEVEEQAGSSWRAFE 1014
Query: 736 RISNVIHETRALDINTQV 753
+ ++ E AL Q+
Sbjct: 1015 DLLAILQEVEALSGPPQL 1032
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 752 QVIF-PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVR--LWKN 808
QV F PLG A + NELW+A+VL + L L P QLA ++++S R +W
Sbjct: 1096 QVAFTPLGLVAREVNCANELWMALVLTHDALQALPPPQLAGALSAVISAECVSRPTVW-- 1153
Query: 809 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREM 868
+ Y + V + +++ R LQ +HGV+ P +D + +G+VEAWA+G +W ++
Sbjct: 1154 --AAYSATEGVTAAVAAVEDARQRLAGLQVRHGVDAPISVDLRLAGLVEAWAAGCSWEQV 1211
Query: 869 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 922
M DC+LDDGD+ARLL RT+DLL Q+ + L+K+A A MDR PIS+L
Sbjct: 1212 MQDCSLDDGDVARLLTRTVDLLRQVAHCDTLLPPLRKSARQAMAAMDRKPISDL 1265
>gi|406981420|gb|EKE02900.1| hypothetical protein ACD_20C00317G0035 [uncultured bacterium]
Length = 773
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 185/516 (35%), Positives = 271/516 (52%), Gaps = 79/516 (15%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ ++G + E L +V +VLDEVHY++D RGTVWEE IIY P +Q+I LSA
Sbjct: 111 FRNMLYGTNLGRI--EENLRNVQYVVLDEVHYMNDEQRGTVWEESIIYSPNNIQLIALSA 168
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLS 119
T+ANAD+L WI +HG T L+ S RPVPL ++ S +LPL G+ +N K+
Sbjct: 169 TIANADKLTEWINTVHGDTALVNSDFRPVPLKHFYYSPSKPNEILPLFAPGGR-LNSKIR 227
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
KP + +RK +R + V ++
Sbjct: 228 -------AESPKP--------KFARK-------------------------VREASVSEL 247
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
++ L +DMLPAI+F F+R+ CD + LL++ E + + + + YP
Sbjct: 248 VEIL---HKKDMLPAIYFTFSRKKCDDNMIECSRLRLLNKFEEKRLLQIIDEYILDYPYL 304
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+ ++ + GVA+HHAG LP WK IE+LFQ GL+K VFATETLAAGINMPAR+ V+S
Sbjct: 305 GKHKYLEYIYSGVASHHAGLLPGWKVLIEKLFQHGLIKAVFATETLAAGINMPARSTVIS 364
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
S+SKRT G LT++E QM+GRAGRRG+D G+V +V TP++ EE L + +PL
Sbjct: 365 SISKRTDDGHRVLTASEFLQMSGRAGRRGMDEVGYVTVVGTPFQSPEEVGILASSASDPL 424
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
S+FT SY MVLNLL V E+AR+L+ +SFG Y + M
Sbjct: 425 ESKFTPSYSMVLNLLQRFTV-------------------EDARELILKSFGYYSSTEKMK 465
Query: 420 AAKDELCKIQKETDVLTS-----EISDDAIDRKSRRLLSEAAYKEMAN-LQEELKAEKRF 473
E +I + D L + ++ + + + ++ + Y+++ N L+++ K R
Sbjct: 466 LLIREQERINETIDELNNIKCPYRLTQEDLIKYNKLKNTYIEYRKLTNILRKQAKQAGRQ 525
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYK 509
R+ E K KDIL+ E C QYK
Sbjct: 526 RSPEVIEYENK----TKDILRQLERSKCD-QCKQYK 556
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 28/238 (11%)
Query: 693 KEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ 752
K+YK+ + + +E R + RSK++T++IE + W++F+ + V+ + L I+
Sbjct: 553 KQYKRHIKNLDISE----RFERRSKKVTEQIENEKDIYWRQFVNLMAVLEDLEYL-IDK- 606
Query: 753 VIFPL--GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLW---- 806
+P G A+IR ENEL+ A ++ + I+ L PA+LAAV ++ +E + + +
Sbjct: 607 --YPTEKGVMTASIRSENELFFAELILSGIMDGLSPAELAAVVCAVATEEPRSQFYSRFQ 664
Query: 807 ---KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGL 863
K +I E V V V Q+K+ V P L+ +S +VE W +G
Sbjct: 665 LGAKARKAIIEGREVVRKVWKV-----------QKKYDVNTPILLNPHYSPLVEFWTNGG 713
Query: 864 TWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
W E++ + +GDL R +RTIDLL Q+ +P+V +++ + A A ++R P+SE
Sbjct: 714 EWEELIKGLEMGEGDLVRTFKRTIDLLRQLANMPNVPKQVAQTASIAMECINREPVSE 771
>gi|449018272|dbj|BAM81674.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 1214
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 192/526 (36%), Positives = 280/526 (53%), Gaps = 74/526 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D+ V+V DE HY++D RGTVWEE +I P ++ LSAT+ NA E++ W +HG
Sbjct: 236 LDDLFVVVFDEFHYMNDRERGTVWEEAVIGSPTHTILVALSATMRNAAEISEWFEAVHGV 295
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLL-------DEKGKHMNR---KLSLNYLQLSTSE- 129
T+LI ++ RPVPL + + L PLL +KGK R + + N +L T E
Sbjct: 296 TDLIVANDRPVPLEYVYLDADGLHPLLVPLKRSSGDKGKGFGRSRQRGARNESKLPTIEG 355
Query: 130 ---VKP---------YKDGGSRRRNSRKHADMNSNNIVTSFG-QHQLSKNSINAIRRSQV 176
+ P K RR+ R D N N+ S + + + R V
Sbjct: 356 RYQMNPELVWNVGQESKQIAERRQRWR---DANDPNLRRSAEVLERREARRLRELYRVSV 412
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL----EDCNLLDECEMSEVELALKRF 232
P + LR+R +LPAI F+F+R GCD AV + L+ + E + +E ++ F
Sbjct: 413 PSYPFLVRCLRNRQLLPAIVFVFSRSGCDRAVSEVLRERSALKLVSKAERAMLESEMEAF 472
Query: 233 RILYPDAVREP----AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
++P+ P + +++GVAAHHAG LP+WK+ +E+LFQ L+KVVFATETLAAG
Sbjct: 473 FEVHPELRENPDSQKRYESIMEGVAAHHAGMLPLWKALVEQLFQANLIKVVFATETLAAG 532
Query: 289 INMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE-GAE 346
INMPAR+ V+++LSKR+ S IQ LT NE QMAGRAGRRG+D G+VV++Q+ +E AE
Sbjct: 533 INMPARSTVVTALSKRSRSEGIQRLTPNEFLQMAGRAGRRGMDPIGYVVVMQSAWEPSAE 592
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
C+LL G + L S F SYGM LNLL G L+ AR+ +E
Sbjct: 593 VACQLLQRGADALRSNFVPSYGMALNLLR-----------------YPGTPLQSARRYLE 635
Query: 407 QSFGNYVGSNVMLAA-KDELCKIQKETDVLTSEISDDAIDRKSRRLLSE-------AAYK 458
+SFG+++ S L K E I E + L ++ +++ R+ ++ AAY
Sbjct: 636 RSFGSFLASRGRLNQWKPE---IHDEVEALERQV------KEAHRIFAQHGGEKVVAAYD 686
Query: 459 EMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFL 504
+ L E L+ E+R L + E S ++D+L + G + L
Sbjct: 687 K---LLERLRCEERILGYLHEQHEESAVSIMEDLLVFSDPGTIVLL 729
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 122/281 (43%), Gaps = 50/281 (17%)
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 735
R ++ R + TE + ++ +VD ++ R +R+E++E E
Sbjct: 902 RQRLMRQTMQATATESWNIFRALVDVLE------------RYRCLERVEEVEDDARAESG 949
Query: 736 RISNVIHETRALDINTQVIF----PLGETAAAIRGENELW--LAMVLRNKILLDLKPAQL 789
+ + D ++ F G A +R ENELW LA++ + L L P +L
Sbjct: 950 QDVTRAAPEASDDTGSRYTFFRLTEFGSIVAGLRVENELWAGLALIHAEQQLAGLAPHEL 1009
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI-NVLDEHRSSFLELQEK--------- 839
AAV AS+ ++ L + PS V+++ VL R Q++
Sbjct: 1010 AAVVASIAAD---TSLPPGGYCRFLPSVRVLDLCREVLGPLRKQLAAAQQEALETYWSPS 1066
Query: 840 ----HG-VEIP-CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
+G + IP L +G+VEAWA W ++ +LD+GD+ RLLRRTIDLL QI
Sbjct: 1067 MATLNGELMIPDVRLSYDLAGVVEAWACETPWSTLLNGVSLDEGDIVRLLRRTIDLLRQI 1126
Query: 894 PKLPD-------------VDQRLQKNAVDASNVMDRPPISE 921
L V +L NA A ++DR P+++
Sbjct: 1127 ANLGTSSGLGWSRRVAALVSSQLVVNAKRALTLIDRYPVND 1167
>gi|224002745|ref|XP_002291044.1| hypothetical protein THAPSDRAFT_262824 [Thalassiosira pseudonana
CCMP1335]
gi|220972820|gb|EED91151.1| hypothetical protein THAPSDRAFT_262824, partial [Thalassiosira
pseudonana CCMP1335]
Length = 1128
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/399 (40%), Positives = 222/399 (55%), Gaps = 31/399 (7%)
Query: 26 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELI 84
++VLDE HY+ RG+ WEE +I P QI+ LSAT+ NA LA W+ + G KT LI
Sbjct: 202 IVVLDEFHYMGQKGRGSTWEECVITNPSHTQIVGLSATLPNAHRLAAWMESVTGRKTVLI 261
Query: 85 -TSSRRPVPLTWYFSTKTALLPLL-----DEKGKHMNRKLSLN-YLQLSTSEVKPYKDGG 137
+RPVPL +YF TK PL E G + L L+ LQ + D
Sbjct: 262 EAGGQRPVPLRYYFVTKRDFSPLFHNSLFQEIGNGLPLGLDLHPTLQKAAERRLASIDRR 321
Query: 138 SRRRNSRKHAD----MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+R R+ D + + +++ Q + + + A R VP V + L+ D+LP
Sbjct: 322 IQRIVDRETQDDYDSYSRGSPMSAREQRRAKEQMLKAELRKSVPSVAAMIGRLQDDDLLP 381
Query: 194 AIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPD-AVREPAIKGLLKG 251
AI+FIF+R GCD A Q L E+ LL + EV + F P+ A + ++ LL G
Sbjct: 382 AIFFIFSRNGCDNAAQVLCENLGLLTFVQTKEVAYRVLTFNTENPEIAFSDAWVERLLLG 441
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V +HHAG LP K+FIE LF+ L+KVVFATETLAAGINMPART V+ S++KR +G
Sbjct: 442 VGSHHAGILPAHKAFIETLFRLELMKVVFATETLAAGINMPARTTVVCSMAKRGDNGMDL 501
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
L ++ L QMAGRAGRRG+D +G V+ TP+EG EE K+L ++P+VSQF SY + +
Sbjct: 502 LETSNLLQMAGRAGRRGMDTQGACVIAATPFEGPEEAIKILTDEIKPVVSQFAPSYALAI 561
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
NL+ M L+ A+ +V++SFG
Sbjct: 562 NLIERGSGM-----------------LDVAKSMVQKSFG 583
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 855 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP----------DVDQRLQ 904
+V AWASG +W+E++ GDL R L R +D L QI LP V RL+
Sbjct: 1004 VVTAWASGASWKEVLEMSGSAPGDLVRTLSRALDALRQIANLPFVPARGFEGDGVTVRLE 1063
Query: 905 KNAVD---------ASNVMDRPPISE 921
N V A+N MDR P+ +
Sbjct: 1064 ANGVHPRIRALCRAAANDMDRYPVKD 1089
>gi|399527088|ref|ZP_10766815.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398362339|gb|EJN46041.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 907
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/445 (36%), Positives = 232/445 (52%), Gaps = 59/445 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V++LDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 130 VVVMTTEVLRNMIYAGAALDDLGVVILDEVHYLADKMRGPVWEEVIIHLPTHVAIIALSA 189
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK
Sbjct: 190 TVSNAEEFGAWIREVRSTCEIIVSEKRPVPLYQHMIVGEDIFDLYAPTGKG--------- 240
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+L+ V +D G R G+ S N +RR P + +
Sbjct: 241 -KLNPELVAATRDSGMR------------------GGRGSRSWNHEVRVRRESRPSTLIS 281
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--D 238
L R +LPAI FIF+R GC+ AV+ + L E +E+E + L P D
Sbjct: 282 LDRAR---LLPAITFIFSRAGCEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPED 338
Query: 239 AV---REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+ E +GL++G+AAHHAG LP+ K +E LF RGLVK+V+ATETLA GINMPART
Sbjct: 339 AIVLGTEAWKRGLMRGIAAHHAGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPART 398
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 399 VVIESLTKWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKR 458
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL+S FT +Y MV+NLLA ++ +A + RK++E SF Y
Sbjct: 459 TYPLISAFTPTYNMVVNLLA--------------RSTRA-----QTRKVLESSFAQYQAD 499
Query: 416 NVMLAAKDELCKIQKETDVLTSEIS 440
+ ++A L +++ + D ++S
Sbjct: 500 SAVVALASRLTELEAQRDATAEDLS 524
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I GE +L +AM + +L A+LA++ ++LV + +++ P+ I +
Sbjct: 749 IFGERDLVVAMSMNEGTWNELDEAELASMVSALVYDSRS----DDDAQQLAPAGVGIRLQ 804
Query: 824 NVLDEHRSSFLELQEKHGVEIPC------CLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
E S L+ H VE C LD+ AWA G T + + G
Sbjct: 805 EAWHE---SLATLERVHRVEKACGCDLTPSLDAGLMAATLAWAHGSTLATAIDATPIQAG 861
Query: 878 DLARLLRRTIDLLAQI 893
D R +R+ +D L QI
Sbjct: 862 DFVRWMRQVMDCLGQI 877
>gi|269925598|ref|YP_003322221.1| DEAD/DEAH box helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269789258|gb|ACZ41399.1| DEAD/DEAH box helicase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 952
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 230/418 (55%), Gaps = 46/418 (11%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RI+V + V ++ + L DV +V DEVHYLSD RGT WEE II CP+ +Q+ICL
Sbjct: 104 RILVMTTEVLRNMLLQTPWELEDVACVVFDEVHYLSDPERGTTWEEAIILCPEHIQLICL 163
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA E+A WI ++H T+LI R VPL++Y+ +LP D+ GK +N+KL L
Sbjct: 164 SATVSNAQEIADWISRVHRPTKLIAHYERAVPLSYYYFIDNTILPAFDKNGK-LNKKL-L 221
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
N GG R+ R+ +++ + S R++ P+
Sbjct: 222 NL-------------GGEARQRFRRRVNLSVQESLES--------------ERTE-PKPP 253
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDECEMSEVELALKRF-RILY 236
D + LR +DMLPAI+F+F+R+ C+ A + L + + E++ + F + +
Sbjct: 254 DIVRVLRDKDMLPAIYFLFSRKDCEIAAELCRSMRLQLVTSKEQRDEIKRVIDLFSQRML 313
Query: 237 PDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
P+ +K +L +G+ HHAG LPI K +EELF RGL+KVVFAT+TLA GINMP
Sbjct: 314 PEDRNLAQVKTVLDLARQGIGFHHAGLLPILKQLVEELFSRGLMKVVFATDTLALGINMP 373
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ V+ +SK G L NE QMAGRAGRRGID GHV++ + + E ++
Sbjct: 374 ARSVVIGQMSKFDGQGVRPLIPNEFQQMAGRAGRRGIDKIGHVIVPYSSWVSFREAMEIA 433
Query: 353 FAGVEPLVSQFTASYGMVLNLL---AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
+ P+ S F Y VLNL G +V+++ +S + Q R + E + ++Q
Sbjct: 434 TGELHPVQSAFVLRYNTVLNLWDPPKGDRVLYVLQQS--LMQFQTNRQIRELSEEIKQ 489
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 819 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+IN+ LD+ + L + + GV+I + F GM+ AW +G + +++ + +GD
Sbjct: 821 LINLRRQLDDLETRILRAESRAGVQISQGYNPYFFGMMRAWCNGASLSQILDKVDIGEGD 880
Query: 879 LARLLRRTIDLLAQI-----------PKLPDVDQ 901
L +T+DL+ Q+ P LP +DQ
Sbjct: 881 LVMTFNKTLDLIRQVRDMLVQADPGSPLLPKLDQ 914
>gi|452822714|gb|EME29731.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 927
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 252/468 (53%), Gaps = 57/468 (12%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
V +V DE H+++D RGTVWEE II PKEV ++ LSAT++NA +L W+ +H KT L
Sbjct: 127 VFAVVFDEFHFMNDPERGTVWEEAIIASPKEVILVALSATMSNAAQLKDWLSNVHRKTSL 186
Query: 84 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL + F L LL K N +L+ L + D RRRN
Sbjct: 187 HETHVRPVPLHFQFCNHKGLHDLLHTSKKDENACSALSKTLLFDYKQHYQVDKNKRRRNR 246
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ +R Q P V + L R MLP I F+F+R G
Sbjct: 247 -------------------------STLRSLQSPSVGFLVRILFRRKMLPCILFVFSRAG 281
Query: 204 CDAAVQYLED---CNLLDECEMSEVELALKRFRILYPD--AVREPAIKGLLKGVAAHHAG 258
CD A + L D +L+ + E ++ + +F +P+ A +E +K L G++ HHAG
Sbjct: 282 CDRAAEELGDKLRSHLVTKREQQVLQSRIFQFIDHFPEIAAQQEDRLKLLQLGISVHHAG 341
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP+WK+F+EELF GL+KV+FATETLAAG+NMPART V+S+L KR +G +L+++
Sbjct: 342 LLPVWKNFVEELFIEGLIKVIFATETLAAGMNMPARTTVISALFKRGDNGMERLSTSSFQ 401
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG D++G V++Q+P + +L+ VE + S+F +YG+VLNL
Sbjct: 402 QMAGRAGRRGKDSQGFCVVLQSPDTHPKHVFQLVTGNVEAITSKFLPTYGLVLNL----- 456
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
LQ G+S ++ + + +SFGN+ + A + + + +KE ++ +
Sbjct: 457 -------------LQDGKSPQQVKDFLGKSFGNF-----LFAYERKRQEQEKENEL---Q 495
Query: 439 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR-FRTELRRRMELKR 485
+ A+ + + +K LQ++LK E+R R ++ +E++R
Sbjct: 496 KYNSAMKTLTENNIVLEEWKRYRRLQQKLKMERRTLRYLTKQWIEMQR 543
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 757 LGETAAAIRGENELWLAMVLR--NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYE 814
LG AIRGENE+WL++VL + +P L V A+++ + I+ N +E
Sbjct: 783 LGRLCVAIRGENEVWLSIVLGYLGGQVQTYEPHHLIGVVATVIGDPIREDAVIN----WE 838
Query: 815 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
S+ + ++ L + + +Q +HG+ ++ +SG+ E WA W ++ +L
Sbjct: 839 ASSITLTLLEQLQVYYDQVVSIQNQHGIVCFTRMEPGWSGIAETWAKEANWSRLVSGTSL 898
Query: 875 DDGDLARLLRRTIDLLAQIPKLP 897
D+GD+ R LRR +D+L QIP+LP
Sbjct: 899 DEGDICRNLRRVLDILRQIPRLP 921
>gi|293192805|ref|ZP_06609700.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
gi|292820052|gb|EFF79050.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
Length = 922
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 174/493 (35%), Positives = 248/493 (50%), Gaps = 79/493 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V++LDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 145 VVVMTTEVLRNMIYAGASLNDLGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSA 204
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK
Sbjct: 205 TVSNAEEFGAWIREVRSTCEIIVSEKRPVPLYQHMIVGEDIFDLYAPAGKG--------- 255
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+L+ V +D G R G+ S N +RR P + +
Sbjct: 256 -KLNPELVAATRDSGMR------------------GGRGSRSWNREVRVRRESRPSTLIS 296
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--D 238
L R +LPAI FIF+R GC+ AV+ + L E +E+E + L P D
Sbjct: 297 LDRAR---LLPAITFIFSRAGCEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPED 353
Query: 239 AV---REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+ E +GL++G+AAHHAG LP+ K +E LF RGLVK+V+ATETLA GINMPART
Sbjct: 354 AIVLGAEAWKRGLMRGIAAHHAGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPART 413
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 414 VVIESLTKWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKR 473
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL+S FT +Y MV+NLLA ++ +A + RK++E SF Y
Sbjct: 474 TYPLISAFTPTYNMVVNLLA--------------RSTRA-----QTRKVLESSFAQYQAD 514
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL-------- 467
+ ++ L +++ + D ++S S +E L+++L
Sbjct: 515 SAVVVLASRLTELEAQRDATAEDLS-----------CSHGDVREYLTLRDQLGQAEKSGA 563
Query: 468 KAEKR-FRTELRR 479
+A KR R ELRR
Sbjct: 564 RARKREARDELRR 576
Score = 40.0 bits (92), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I GE +L +AM + +L A+LA++ ++LV + +++ P+ I +
Sbjct: 764 IFGERDLVVAMSMNEGTWNELDEAELASMVSALVYDSRS----DDDAQQLAPAGVGIRLQ 819
Query: 824 NVLDEHRSSFLELQEKHGVEIPC------CLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
E S L+ H VE C LD+ AWA G T + + G
Sbjct: 820 EAWHE---SLATLERVHRVEKACGCDLTPSLDAGLMAATLAWAHGSTLATAIDATPIQAG 876
Query: 878 DLARLLRRTIDLLAQI 893
D R +R+ +D L QI
Sbjct: 877 DFVRWMRQVMDCLGQI 892
>gi|154508797|ref|ZP_02044439.1| hypothetical protein ACTODO_01306 [Actinomyces odontolyticus ATCC
17982]
gi|153798431|gb|EDN80851.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 922
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/493 (35%), Positives = 249/493 (50%), Gaps = 79/493 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V++LDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 145 VVVMTTEVLRNMIYAGASLSDLGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSA 204
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK LN
Sbjct: 205 TVSNAEEFGAWIREVRSSCEIIVSEKRPVPLYQHMIVGEDIFDLYAPTGKG-----KLNP 259
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
++ + + G R SR S N +RR P + +
Sbjct: 260 ELVAATRDSEMRGG----RGSR-------------------SWNREVRVRRESRPSTLIS 296
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--D 238
L R +LPAI FIF+R GC+ AV+ + L E +E+E + L P D
Sbjct: 297 LDRAR---LLPAITFIFSRAGCEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPED 353
Query: 239 AV---REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+ E +GL++G+AAHHAG LP+ K +E LF RGLVK+V+ATETLA GINMPART
Sbjct: 354 AIVLGAEAWKRGLMRGIAAHHAGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPART 413
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 414 VVIESLTKWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKR 473
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL+S FT +Y MV+NLLA ++ +A + RK++E SF Y
Sbjct: 474 TYPLISAFTPTYNMVVNLLA--------------RSTRA-----QTRKVLESSFAQYQAD 514
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL-------- 467
+ ++A L +++ + D ++S S +E L+++L
Sbjct: 515 SAVVALASRLTELEAQRDATAEDLS-----------CSHGDVREYLTLRDQLGQAEKSGA 563
Query: 468 KAEKR-FRTELRR 479
+A KR R ELRR
Sbjct: 564 RARKREARDELRR 576
Score = 40.0 bits (92), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I GE +L +AM + +L A+LA++ ++LV + +++ P+ I +
Sbjct: 764 IFGERDLVVAMSMNEGTWNELDEAELASMVSALVYDSRS----DDDAQQLAPAGVGIRLQ 819
Query: 824 NVLDEHRSSFLELQEKHGVEIPC------CLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
E S L+ H VE C LD+ AWA G T + + G
Sbjct: 820 EAWHE---SLATLERVHRVEKACGCDLTPSLDAGLMAATLAWAHGSTLATAIDATPIQAG 876
Query: 878 DLARLLRRTIDLLAQI 893
D R +R+ +D L QI
Sbjct: 877 DFVRWMRQVMDCLGQI 892
>gi|315604192|ref|ZP_07879258.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313898|gb|EFU61949.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 921
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 231/445 (51%), Gaps = 59/445 (13%)
Query: 5 IVVFSCSVG--MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V++LDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 144 VVVMTTEVARNMIYAGAPLRDLGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK
Sbjct: 204 TVSNAEEFGAWIREVRSTCEIIVSEKRPVPLYQHMIVGEDIFDLYAPTGKG--------- 254
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+L+ V +D G R G+ S N +RR P T
Sbjct: 255 -KLNPELVAATRDFGMR------------------GGRGSRSWNREVRVRRESRPS---T 292
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--D 238
L L +LPAI FIF+R GC+ AV+ + L E +E+E + L P D
Sbjct: 293 LISLDRGRLLPAITFIFSRAGCEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPED 352
Query: 239 AV---REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+ E +GL++G+AAHHAG LP+ K +E LF RGLVK+V+ATETLA GINMPART
Sbjct: 353 AIILGAEAWKRGLMRGIAAHHAGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPART 412
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 413 VVIESLTKWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKR 472
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL+S FT +Y MV+NLLA ++ +A + RK++E SF Y
Sbjct: 473 TYPLISAFTPTYNMVVNLLA--------------RSTRA-----QTRKVLESSFAQYQAD 513
Query: 416 NVMLAAKDELCKIQKETDVLTSEIS 440
+ ++A L +++ + D ++S
Sbjct: 514 SAVVALASRLTELEAQRDATAEDLS 538
>gi|323360030|ref|YP_004226426.1| superfamily II RNA helicase [Microbacterium testaceum StLB037]
gi|323276401|dbj|BAJ76546.1| superfamily II RNA helicase [Microbacterium testaceum StLB037]
Length = 827
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 261/501 (52%), Gaps = 48/501 (9%)
Query: 4 RIVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ L
Sbjct: 119 RIVVMTTEVLRNMLYADSPALRGLRFVVMDEVHYLADRFRGAVWEEVIIHLPRSVKLVSL 178
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G TE+I S RPVPL + + LLPL D++ +++
Sbjct: 179 SATVSNAEEFGDWLDTVRGDTEVIVSETRPVPLEQHVLVRGDLLPLFDDRAGVATAQVNQ 238
Query: 121 NYLQLSTSEVKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L++ Y++ ++ S++HA + G + + I R P+V
Sbjct: 239 ELLRIRGGNAGGYENNRRAQEYRSQRHAGGPRHAHQRRGGHKPVRASQGPRIERIDRPEV 298
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-LDECE--------MSEVELALK 230
++ L + +LPAI+FIF+R GCDAAVQ L N+ L + + E+ LK
Sbjct: 299 VELL---QRNHLLPAIFFIFSRAGCDAAVQQLRRANVRLTSADERVAIRHIVDELTFTLK 355
Query: 231 R--FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+L+ RE L +G+A+HHAG LP +K +EELF+R LVKVVFATETLA G
Sbjct: 356 DEDLAVLHFWEWRE----NLERGIASHHAGLLPAFKEVVEELFRRKLVKVVFATETLALG 411
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K R+ +TS E Q+ GRAGRRGID GH V+ T +
Sbjct: 412 INMPARTVVLEKLEKFNGEARVAITSGEYTQLTGRAGRRGIDVEGHAVVQWTEGLEPQSV 471
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L PL S F +Y M +NL+ Q GRS AR+++E S
Sbjct: 472 ASLASRRTYPLNSSFRPTYNMAVNLID-----------------QFGRS--RAREILESS 512
Query: 409 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKS----RRLLS--EAAYKEMAN 462
F + ++ ++ + ++ + ++ D D + RR LS E + A
Sbjct: 513 FAQFQADRSVVGLARQVKEAEESLSGYETAMTCDRGDFREYSTIRRELSDLEKINRRDAT 572
Query: 463 LQEELKAEKRFRTE-LRRRME 482
L+ E++ + + LRRRM+
Sbjct: 573 APRRLRDERQQQIQSLRRRMQ 593
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 20/215 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 763
E+ +LK + R+ ++I+Q + + F R+ V+ + I+ V+ P G T
Sbjct: 611 ERYWKLKRSTDRIRQQIDQRTGTVARVFDRVVEVLATLEYVAIDEDGGTVLTPAGRTMRR 670
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I GE +L +A LR ++ DL LAA+ LV E + + P +
Sbjct: 671 IYGERDLLVAESLRQRLWDDLDAPSLAALACCLVYEPRRDEAGPGERGL--PRGAFRGAL 728
Query: 824 NVLDEHRSSFLELQEKH---GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ +L+ H G E P S + + AWA GL ++ + GD
Sbjct: 729 DATQTLWQELDDLERDHRLPGSESPA---SGLAPAMHAWAKGLPLDSVLTLADMAAGDFV 785
Query: 881 RLLRRTIDLLAQI-----PKLPDVDQRLQKNAVDA 910
R ++TIDLL QI PKL + + A+DA
Sbjct: 786 RWAKQTIDLLDQISLVAEPKL----AKTARTALDA 816
>gi|381397258|ref|ZP_09922671.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380775575|gb|EIC08866.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 826
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 241/481 (50%), Gaps = 53/481 (11%)
Query: 4 RIVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
R+VV + V M+ ++S L + +V+DEVHYL+D RG VWEE+II+ P V+++ L
Sbjct: 117 RVVVMTTEVLRNMLYADSPALRGLRYVVMDEVHYLADRFRGAVWEEVIIHLPPRVKLVSL 176
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G T +I S RPVPL + + LLPL D++ +++
Sbjct: 177 SATVSNAEEFGDWLDTVRGDTAVIVSETRPVPLEQHVLVRGDLLPLFDDRAGIATAQVNQ 236
Query: 121 NYLQLSTSEVKPYKDG----GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
++L + ++ R R AD + L ++ I R
Sbjct: 237 ELMRLRSVRGSTFESNRRAQDYRSHRHRAQADRSGAARPPKGVTRPLRSANMQRIERIDR 296
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRI 234
PQV++ L ++LPAI+FIF+R GC+ AVQ + L D E E+ + +
Sbjct: 297 PQVVELLARA---NLLPAIFFIFSRAGCEGAVQQVRRSGVRLTDRDERDEIRRIVDERTL 353
Query: 235 LYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
PD + A+ G L +GVAAHHAG LP +K +EELFQR LVKVVFATETLA
Sbjct: 354 TLPD--EDLAVLGFWEWRENLERGVAAHHAGLLPAFKEIVEELFQRKLVKVVFATETLAL 411
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
GINMPART VL L K R+ +TS E Q+ GRAGRRGID GH V+ + +
Sbjct: 412 GINMPARTVVLEKLEKFNGEARVAITSGEYTQLTGRAGRRGIDVEGHAVIQWSENLDPQA 471
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
L PL S F +Y M +NL+ Q GR+ AR+++E
Sbjct: 472 VAALASRRTYPLNSSFRPTYNMAVNLID-----------------QFGRA--RAREILES 512
Query: 408 SFGNYVGSNVMLAAKDELCKIQKETDV-LTSEISDDAIDRKSRRLLSEAAYKEMANLQEE 466
SF + ++ L + K+ +V L + A DR + E A ++ E
Sbjct: 513 SFAQFQADRAVVG----LAREVKDAEVSLAGYAASMACDRGD--------FAEFARMRRE 560
Query: 467 L 467
L
Sbjct: 561 L 561
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I GE +L +A LR +I DL PA L+A+ LV E + + P +
Sbjct: 670 IYGERDLLVAESLRTRIWKDLDPAGLSALACCLVYEPRRDESGPGEHGL--PRGAFRAAL 727
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
E + +L++ H + + + + + +WA G + ++ + L GD R
Sbjct: 728 TATQELWARLDDLEQDHRLPGSSPVATGLAQAMHSWARGASLDRVLQEADLAAGDFVRWT 787
Query: 884 RRTIDLLAQIPKLPD 898
++TIDLL Q+ + D
Sbjct: 788 KQTIDLLDQLSMVAD 802
>gi|396584518|ref|ZP_10484977.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395547799|gb|EJG15195.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 921
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 230/454 (50%), Gaps = 67/454 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V+VLDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 144 VVVMTTEVCRNMIYAGASLDDLGVVVLDEVHYLADKMRGPVWEEVIIHLPAHVSIIALSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK RKL+
Sbjct: 204 TVSNAEEFGAWIREVRSSCEIIVSEQRPVPLYQHMIVGEDIFDLYAPTGK---RKLNPEL 260
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
V D G R G+ S N +RR P T
Sbjct: 261 -------VAATNDSGMR------------------GGRGSRSWNRPVRVRRESRPS---T 292
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVE---------LALKR 231
L L +LPAI FIF+R GC+ AV+ L L E +E+E +A +
Sbjct: 293 LISLDRAHLLPAITFIFSRAGCEDAVRQVLLTRITLTTRSEAAEIERYVDEVIALIAPED 352
Query: 232 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+L DA + +GL++G+AAHHAG LP+ K +E LF +GLVK+V+ATETLA GINM
Sbjct: 353 AVVLGVDAWK----RGLMRGIAAHHAGMLPLMKEAVEHLFSQGLVKMVYATETLALGINM 408
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 409 PARTVVIESLTKWNGSAHVSLSAGEFTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAAL 468
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL+S FT +Y MV+NLLA + + + RK++E SF
Sbjct: 469 ASKRTYPLISAFTPTYNMVVNLLARS-------------------TRTQTRKVLESSFAQ 509
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
+ + ++ L +++ + +++ A D
Sbjct: 510 FQADSAVVQLATRLTELEARQHAIADDLTCSAGD 543
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L + I+ S F R+ V+ LD + + GE I GE +L +AM L
Sbjct: 720 LRRSIDSQTGSVAAHFDRVCAVLERLGFLDGDR--VTASGERLRRIFGERDLVIAMSLNE 777
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
DL A+LA++ ++LV + ++++ P+ I + +E S L
Sbjct: 778 GAWNDLDEAELASMVSALVYDSRS----DDDANELAPTGVGIRLRTAWEE---SLGTLAR 830
Query: 839 KHGVEIPC------CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892
H VE C LD+ AWA G T + + GD R +R+ +D L Q
Sbjct: 831 VHRVEKQCGCDPTPSLDAGLMSATLAWAHGSTLATAIDGTDIQAGDFVRWMRQVMDCLGQ 890
Query: 893 I 893
I
Sbjct: 891 I 891
>gi|148272867|ref|YP_001222428.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830797|emb|CAN01738.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 823
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 182/514 (35%), Positives = 261/514 (50%), Gaps = 61/514 (11%)
Query: 4 RIVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L D+ +++DEVHYL+D RG VWEE+II+ P+ V++I L
Sbjct: 120 RIVVMTTEVLRNMLYADSDLLRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISL 179
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G+T++I S RPVPL + + ++ L D G +++
Sbjct: 180 SATVSNAEEFGDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSSGLAATHRVNP 239
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--PQ 178
++++ GG R + +S + G K + A R ++ P+
Sbjct: 240 ELVRMT--------HGGGREAVRVRGGQGHSRGRTGAVGGS--GKRAPGAWDRGRMDRPE 289
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK-RFRIL 235
V+ L R++LPAI+FIF+R GCDAAV+ + L E E+ ++ R R L
Sbjct: 290 VVALL---EERNLLPAIFFIFSRAGCDAAVKQVLRAGVRLTHAHERDEIRAVVEERCRTL 346
Query: 236 YPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+ + ++GL +GVAAHHAG LP +K +EELFQR LVK VFATETLA GINM
Sbjct: 347 RDEDLAVLGYWEWLEGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINM 406
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL L K R+ LT E Q+ GRAGRRGID GH V+ + L
Sbjct: 407 PARTVVLEQLEKFNGEARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASL 466
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F +Y M +NL+ Q GR E R+++E SF
Sbjct: 467 ASRRTYPLNSSFRPTYNMAVNLID-----------------QFGR--ERTREVLESSFAQ 507
Query: 412 YVGSN--VMLAAKDELCKIQKET-----DVLTSEISDDAIDRKSRRLLSE-----AAYKE 459
+ V LA K + Q+E+ + + D RR LS+ AA +
Sbjct: 508 FQADRAVVDLARK---VRTQEESLAGYEKAMVCHLGDFREYSGLRRELSDLERATAARAD 564
Query: 460 MANLQEELKAEKRFR--TELRRRMELKRFSALKD 491
M + + +KR R T+LRRRM+ A KD
Sbjct: 565 MQQPGQHGERDKRQRQLTDLRRRMKAHPCHACKD 598
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 7/196 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 762
E+ RLK ++ L ++I + K F R++ ++ + RA D P G
Sbjct: 607 ERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRATDGQVAPT-PNGRMLK 665
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
I G+ +L +A LR ++ +DL PA LAA+ ASLV + + +N+ ++ P
Sbjct: 666 RIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPRRDEGDRNDRNL--PRGAFRAA 723
Query: 823 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 882
+ +E S +++ + + L + + WA G + ++ + L GD R
Sbjct: 724 LERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDFVRW 783
Query: 883 LRRTIDLLAQIPKLPD 898
++TIDLL Q+ + D
Sbjct: 784 TKQTIDLLDQLSVVAD 799
>gi|269836934|ref|YP_003319162.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269786197|gb|ACZ38340.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 962
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 213/398 (53%), Gaps = 54/398 (13%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD I+ DEVHY++D RGT WEE II CP+ +Q+ICLSATV+NADE+A WI + H L
Sbjct: 129 VDCIIFDEVHYIADPERGTTWEEAIILCPEHIQLICLSATVSNADEIAQWISRTHRPIHL 188
Query: 84 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-GGSRRRN 142
+T R VPL+ Y+ L ++DE G+ +V + + GG RR
Sbjct: 189 VTHYERAVPLSLYYFLDKKLHLVIDEHGR----------------QVADFPNTGGELRR- 231
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH----LRSRDMLPAIWFI 198
Q+ + +++ +R Q Q W L+++DMLPAI+F+
Sbjct: 232 -------------------QMMRGGLSSEQRRQAEQAEPPPWEIIRALQTQDMLPAIYFL 272
Query: 199 FNRRGCDAAVQY--LEDCNLLDECEMSE-----VELALKRFRILYPDAVREPAIKGLLK- 250
F+RR C+ Q L NL+ + ++ + VE L + R+ + + I L +
Sbjct: 273 FSRRDCEDYAQRFALMRPNLVKDDKIRQEINTVVENYLSQMRLEDRELAQVQQIASLAQL 332
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HHAG LPI K +E LF RGL++VVFAT+TLA G+NMPAR+ V+ ++K R
Sbjct: 333 GIGFHHAGLLPILKQLVEVLFSRGLMQVVFATDTLALGVNMPARSVVIGRMTKWDGRRRR 392
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
LT NE QMAGRAGRRG+D RG VV+ +P+ E ++ +EP+ S F Y V
Sbjct: 393 PLTPNEFQQMAGRAGRRGMDERGSVVVPYSPWMSFREMLEIATGELEPVRSSFAIRYNTV 452
Query: 371 LNLL---AGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
LNL G +V H+ +S + Q R + E L+
Sbjct: 453 LNLWDPPHGTRVRHMLQQS--LSQFQTARRVREIEDLI 488
>gi|399523711|ref|ZP_10764320.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398375256|gb|EJN52691.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 920
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 203/384 (52%), Gaps = 48/384 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
+VV + V M+ + + L D+ V+VLDEVHYL+D RG VWEE+II+ P V II LSA
Sbjct: 144 VVVMTTEVCRNMIYAGAPLEDLGVVVLDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WI ++ E+I S +RPVPL + + L GK
Sbjct: 204 TVSNAEEFGAWIREVRSSCEIIVSEKRPVPLYQHMIVGEEIFDLYAPTGKG--------- 254
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+L+ V D G R G+ S N +RR P T
Sbjct: 255 -KLNPELVAATGDSGMR------------------GGRGSRSWNRSPRVRRESRPS---T 292
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVE---------LALKR 231
L L +LPAI FIF+R GC+ AV+ L L E + +E +A +
Sbjct: 293 LISLDRAHLLPAITFIFSRAGCEDAVRQVLLTRITLTTRSEAAAIERYVDEVIALIAPED 352
Query: 232 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+L DA + +GL++G+AAHHAG LP+ K +E LF GLVK+V+ATETLA GINM
Sbjct: 353 AVVLGVDAWK----RGLMRGIAAHHAGMLPLMKETVEHLFSEGLVKMVYATETLALGINM 408
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART V+ SL+K S + L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 409 PARTVVIESLTKWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAAL 468
Query: 352 LFAGVEPLVSQFTASYGMVLNLLA 375
PL+S FT +Y MV+NLLA
Sbjct: 469 ASKRTYPLISAFTPTYNMVVNLLA 492
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 16/197 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIE-------PSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
E+ R AR R+ + IEQ+ S +F R+ V+ LD + + G+
Sbjct: 700 EEHARAGARWARMGREIEQLRRSIDSQTGSVAAQFDRVCAVLERLGFLDGDR--VTASGQ 757
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
I GE +L +AM L DL A+LA++ ++LV + + ++ P+
Sbjct: 758 RLRRIFGERDLVVAMSLNEGTWNDLDEAELASIVSALVYDSRS----DDEANELTPTGVG 813
Query: 820 INVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
I + +E + + +++ G E LD+ AWA G T + +
Sbjct: 814 IRLRTAWEECVGTLARVHRVEKQCGCEPTPSLDAGLMSSTLAWAHGSTLATAIDGAEIQA 873
Query: 877 GDLARLLRRTIDLLAQI 893
GD R +R+ +D L QI
Sbjct: 874 GDFVRWMRQVMDCLGQI 890
>gi|295395917|ref|ZP_06806102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971190|gb|EFG47080.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 894
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 212/421 (50%), Gaps = 67/421 (15%)
Query: 4 RIVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+I+V + V M+ S + L D+ +VLDEVHYL D RG VWEE+II+ P V ++ LS
Sbjct: 120 QIMVMTTEVLRNMIYSGTDLSDLGFVVLDEVHYLGDRFRGPVWEEVIIHLPIHVLLVSLS 179
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ ++ G T++I S RPVPL + T + PL +G ++N++L
Sbjct: 180 ATVSNAEEFGAWLAEVRGSTDVIVSEHRPVPLHNHACVGTDIFPLFAPRGYNVNKELERY 239
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ S G+RRR T F RR VI+
Sbjct: 240 VRRFQPSP-------GNRRRG----------RYFTRF-------------RRPARSSVIE 269
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDA 239
L S ++LPAI+FIF+R GCD A LE C +D E + +R L +
Sbjct: 270 ALG---SANLLPAIFFIFSRNGCDDA---LEQCLAGGVDLTSTREKQEIARRLDDLSEEL 323
Query: 240 VREPA--------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
E GL++G+ HHAG +P +K +EELF RGL++VVFATETLA GINM
Sbjct: 324 PAEDLGVLGFHNFSAGLMQGIGVHHAGLIPQFKEIVEELFVRGLLRVVFATETLALGINM 383
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL L+K +Q+T E Q+ GRAGRRGID GH V V P + L
Sbjct: 384 PARTVVLEKLTKFNGESHVQITPGEYTQLTGRAGRRGIDVEGHAVTVWNPQIELADIAAL 443
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
L SQFT +Y M NLLA + E+A+K++E SF
Sbjct: 444 ASKRTYALKSQFTPTYNMAANLLARM-------------------TSEDAKKVLETSFAQ 484
Query: 412 Y 412
Y
Sbjct: 485 Y 485
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 11/187 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E++ +++ LT +IE S F R+ NV+ + L ++ ++ I G
Sbjct: 692 ERVAKVEKELSSLTHQIEGRTSSIAHVFDRVCNVLVTLKFLPDDSWIL-------RRIYG 744
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L AM +R I L ++AA+ +SLV + + + PS + L
Sbjct: 745 ERDLLTAMSVRAGIWDRLTEPEVAALASSLVYQARR----EEAGVPRLPSKHLQKAFGEL 800
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
+ + ++ + I D + AW G T M GD R ++T
Sbjct: 801 QQLWNQLFHIETDSRLPITPEPDPGMMKAIFAWTEGKTLSSAMGSAEFSAGDFVRWAKQT 860
Query: 887 IDLLAQI 893
+DLL Q+
Sbjct: 861 LDLLGQV 867
>gi|170782067|ref|YP_001710399.1| helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156635|emb|CAQ01787.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
Length = 823
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 181/512 (35%), Positives = 255/512 (49%), Gaps = 57/512 (11%)
Query: 4 RIVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L D+ +++DEVHYL+D RG VWEE+II+ P+ V++I L
Sbjct: 120 RIVVMTTEVLRNMLYADSDLLRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISL 179
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G+T++I S RPVPL + + +L L D G +++
Sbjct: 180 SATVSNAEEFGDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMLDLFDSSGLAATHRVNP 239
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
++++ GG R + +S + G R P+V+
Sbjct: 240 ELVRMT--------HGGGREAVRVRGGQGHSRGRAGAGGGSGRRAPGPWDRGRMDRPEVV 291
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK-RFRILYP 237
L R++LPAI+FIF+R GCDAAV + L E E+ ++ R R L
Sbjct: 292 ALL---EERNLLPAIFFIFSRAGCDAAVTQVLRAGVRLTHAHERDEIRAVVEERCRTLRD 348
Query: 238 DAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + ++GL +GVAAHHAG LP +K +EELFQR LVK VFATETLA GINMPA
Sbjct: 349 EDLAVLGYWEWLEGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPA 408
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K R+ LT E Q+ GRAGRRGID GH V+ + L
Sbjct: 409 RTVVLEQLEKFNGEARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLAS 468
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
PL S F +Y M +NL+ Q GR E R+++E SF +
Sbjct: 469 RRTYPLNSSFRPTYNMAVNLID-----------------QFGR--ERTREVLESSFAQFQ 509
Query: 414 GSN--VMLAAKDELCKIQKET-----DVLTSEISDDAIDRKSRRLLSE-----AAYKEMA 461
V LA K + Q+E+ + + D RR LS+ AA +M
Sbjct: 510 ADRAVVDLARK---VRTQEESLAGYEKAMVCHLGDFREYSGLRRELSDLERATAARADMQ 566
Query: 462 NLQEELKAEKRFR--TELRRRMELKRFSALKD 491
+ + +KR R T+LRRRM+ A KD
Sbjct: 567 QPGQHGERDKRQRQLTDLRRRMKAHPCHACKD 598
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 762
E+ RLK ++ L ++I + K F R++ ++ + RA D P G
Sbjct: 607 ERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRAADGQVAPT-PNGRMLK 665
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
I G+ +L +A LR ++ +DL PA LAA+ ASLV + ++ +N+ ++ P
Sbjct: 666 RIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPLRDEGDRNDRNL--PRGAFRAA 723
Query: 823 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 882
+ +E S +++ + + L + + WA G + ++ + L GD R
Sbjct: 724 LERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDFVRW 783
Query: 883 LRRTIDLLAQIPKLPD 898
++TIDLL Q+ + D
Sbjct: 784 TKQTIDLLDQLSIVAD 799
>gi|284928620|ref|YP_003421142.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
gi|284809079|gb|ADB94784.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
Length = 966
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 233/466 (50%), Gaps = 100/466 (21%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
R +++ +G V + L +V ++LDE HY+S+ SRGTVWEE IIYCP +Q++ LSA
Sbjct: 118 FRNMLYETLIGQVGT--SLDNVATVILDECHYISNRSRGTVWEESIIYCPPNIQLVALSA 175
Query: 63 TVANADELAGWIGQIHGK-------------TELITSSRRPVPLTWYFST---------- 99
T+ N EL WI Q+ EL+ S+ RPVPL +YFS
Sbjct: 176 TIGNPGELTEWINQVRTSFPNRNSEKNLISLCELVNSNFRPVPLRFYFSQKNGLFPLLNS 235
Query: 100 -KTALLPLLD-----EKGKHMNRKLSLNYL----QLSTSEVKP-YKDGGSRRRNSRKHAD 148
K+AL LL +K K + R+ + L QL ++ P SRR +
Sbjct: 236 QKSALNALLKSQEPKDKLKRIKREDCPDPLTVVKQLYQRKLLPSIYIIFSRRECDKAVQK 295
Query: 149 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS----------RDMLP----- 193
++ N+V+ H L N + + P + + L + + +D L
Sbjct: 296 LHDLNLVSPEEAHALQYNLL-IFFLADSPNLQENLLRITASKNLALHKVLKDFLKNFNTH 354
Query: 194 AIWFIFNRRGCDAAVQYLED-----CNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
++ F + + DA YL D CNL VRE ++ L
Sbjct: 355 SLLFSYLAKNKDAK-NYLFDILASLCNL-----------------------VREDHLEPL 390
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LSKRT +G
Sbjct: 391 TRGIAAHHAGILPAWKELVEQLFEAGLVKVVFATATLSAGINMPARTTVISALSKRTDNG 450
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
LT +E Q+AGRAGRRG+D GHV++ QT +EG E L A E L S FT SYG
Sbjct: 451 HNMLTPSEFLQIAGRAGRRGMDKVGHVIINQTVFEGPSEAAYLATAKPESLKSCFTPSYG 510
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
MVLNLL +++E + L+E+SF Y+
Sbjct: 511 MVLNLL-------------------QKHTIQETKNLLEKSFAEYLA 537
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 28/276 (10%)
Query: 664 EYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL-KARSKRL--- 719
E H+ + YK + + K+ + G + K + F EE K+L K ++L
Sbjct: 699 EVHEVMNKYKASKITSQEINKQQDKIYGIE--KSLKSIFPFNEEDTKQLFKFHYEKLKLN 756
Query: 720 ---------TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
+R++ W+EFL + V+ + AL+ + LG+ AA+RGENEL
Sbjct: 757 EKLDFKQIKIQRLQSNHLYYWQEFLNLIEVLQDLGALENYVPTL--LGQATAALRGENEL 814
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL--DE 828
WL +V + IL +L LAA+ +++V+E ++ W N Y PS+ ++N+++ DE
Sbjct: 815 WLGIVFMSGILDNLCSHHLAALVSAIVTETLRPDTWTN----YLPSSELLNIVSNCSKDE 870
Query: 829 HRSSFL-----ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + ++Q+++ + IP L+ +F G+VE WA G W+ + + +LD+GDL RLL
Sbjct: 871 MNINKIYHLLNKIQKRYQIIIPIYLEFKFIGLVEQWALGEDWKNLCKNTSLDEGDLVRLL 930
Query: 884 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
RRTIDLL+QIP++P + L +NA + R P+
Sbjct: 931 RRTIDLLSQIPQIPGLSDSLIRNAEKTVIQLKRFPV 966
>gi|318042296|ref|ZP_07974252.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0101]
Length = 728
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 201/366 (54%), Gaps = 62/366 (16%)
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
L+ S RPVPL + F + L PLL+++G H N K+ G++R
Sbjct: 2 LVMSDYRPVPLQFSFCSAKGLHPLLNDEGTGLHPNCKVW-------------RAPKGNKR 48
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+ + F Q+++ R+MLPAI+FIF+
Sbjct: 49 KGPKTPKPPQPEAPPLGFVVAQMAE-----------------------REMLPAIYFIFS 85
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK-GLLKGVAAHHAGC 259
RRGCD AV+ L L+ E + + L+ F P+AVR+ LL+G+AAHHAG
Sbjct: 86 RRGCDKAVRDLGKVCLVSPEEQARIRARLEAFVEATPEAVRDGGHDDALLRGIAAHHAGV 145
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L +E Q
Sbjct: 146 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLMGSEFLQ 205
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+DN+G+VV VQ+ +EG E +L A +PLVSQFT SYGMVLNLL
Sbjct: 206 MAGRAGRRGLDNQGYVVTVQSRFEGVREAGQLATAPADPLVSQFTPSYGMVLNLL----- 260
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
L +AR+LVE+SFG Y+ + + + + +++++ S +
Sbjct: 261 --------------QRYDLNKARELVERSFGRYLATLDLTEDEARIAELREQ----LSHL 302
Query: 440 SDDAID 445
SD A++
Sbjct: 303 SDQAVE 308
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 110/193 (56%), Gaps = 7/193 (3%)
Query: 731 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
W+ FL + ++ L + + P +G T AA+RG+NELWL + L + L +L+PA
Sbjct: 522 WETFLALIEILRHFGCL-AGEEGLEPTEIGRTVAALRGDNELWLGLSLMSGHLDELEPAD 580
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 848
LAAV ++ +E + LW S + P ++ L R QE+ V +P
Sbjct: 581 LAAVFEAISTEVNRPDLW----SGFPPPPAAEEALHDLRGIRRELQRQQERASVVMPLWF 636
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 908
+ + G+V+AWA G++W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ NA
Sbjct: 637 EPELMGLVQAWAKGVSWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSNAR 696
Query: 909 DASNVMDRPPISE 921
A ++R P+ E
Sbjct: 697 AALKAINRFPVCE 709
>gi|417556685|ref|ZP_12207742.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
gi|333602373|gb|EGL13803.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
Length = 879
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 211/390 (54%), Gaps = 61/390 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRS 188
R+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 287 RKASYR-------NVNKRFSKGKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL-- 337
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALK 230
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L
Sbjct: 338 -DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKAL 396
Query: 231 RF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+
Sbjct: 397 RFERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGL 446
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 447 NMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAA 506
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
L V PL S F ++ M +NLL + V
Sbjct: 507 SLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 45/280 (16%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 772 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 831
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
+R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 832 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 871
>gi|422012695|ref|ZP_16359353.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394753944|gb|EJF37416.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 575
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 225/449 (50%), Gaps = 65/449 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
IVV + V M+ + +GL D+ V+VLDEVHYLSD RG VWEE+II+ P+ VQII LSA
Sbjct: 144 IVVMTTEVLRNMIYAGAGLSDLAVVVLDEVHYLSDRMRGPVWEEVIIHLPRHVQIIALSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E W+G++ G ++ S RPVPL + ++ L G +N +L
Sbjct: 204 TVSNAEEFGAWMGEVRGGCAVVVSEERPVPLYQHMVVGDEIIDLYTPSGA-LNPRL---- 258
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+QL+ R R A G+ + S+ S T
Sbjct: 259 VQLTAP----------RSRRPVGAAGRRGAGGGPRGGRRRESRPS--------------T 294
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVE---------LALKR 231
L L +LPAI F+F+R GC+ AV+ + L + +A +
Sbjct: 295 LVALDRAGLLPAITFVFSRAGCEDAVRQVVASGITLTSRATARRISEYVDGVVRAIAPED 354
Query: 232 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+++L DA R+ L++GVAAHHAG LP+ K +E LF +GL+ +V+ATETLA GINM
Sbjct: 355 YQVLGVDAWRD----ALVRGVAAHHAGMLPLMKEAVEHLFSQGLISMVYATETLALGINM 410
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART V+ SL K S R L++ E Q++GRAGRRGID GH V+ EE L
Sbjct: 411 PARTVVIESLQKWNGSSRAPLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGAAPEEVAAL 470
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PLVS F +Y MV+NLL + V E+AR+L+E SF
Sbjct: 471 ASKRAYPLVSAFRPTYNMVVNLLEHSTV-------------------EQARELLESSFAQ 511
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEIS 440
+ +++ L + L +++
Sbjct: 512 FQADRAVVSLASRLRDARARAGALRGDLA 540
>gi|308177425|ref|YP_003916831.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307744888|emb|CBT75860.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 927
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/427 (37%), Positives = 219/427 (51%), Gaps = 55/427 (12%)
Query: 2 QLRIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 58
+ +IVV + V M+ ++S D + +++DEVHYL+D RG VWEE+II+ P VQII
Sbjct: 116 EAQIVVMTTEVLRNMLYADSQTLDGLGYVIMDEVHYLADKFRGAVWEEVIIHLPSNVQII 175
Query: 59 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 118
LSATV+NA+E GW+ + G+T++I S RPVPL + ++ L E +
Sbjct: 176 SLSATVSNAEEFGGWLDTVRGQTDIIVSEHRPVPLFQHVMVGPNVVDLFAED-------V 228
Query: 119 SLNYLQL--STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+ + + S + V P R NS + + IN
Sbjct: 229 AFDKVAEDDSKASVNPELRKLVRTHNSGGRVQRGRGRGGRGPQRSAGMGHRINR------ 282
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY--LEDCNLLDECEMSEVELALKR--F 232
P VI L +LPAI+FIF+R+GCD AVQ + D L E +E+ AL F
Sbjct: 283 PSVIG---KLDRAGLLPAIFFIFSRKGCDMAVQQCAMADLRLTTNEEAAEIAQALDEVAF 339
Query: 233 RILYPD-------AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
RI D + R+ GL++G A+HHAG LPI+K +E+LF R L+KVVFATETL
Sbjct: 340 RIPSEDLDVLEFWSWRD----GLVRGFASHHAGLLPIFKEIVEDLFARNLIKVVFATETL 395
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A G+NMPAR+ VL L K +Q++S E Q+ GRAGRRGID GH ++V P
Sbjct: 396 ALGVNMPARSVVLEKLVKFNGESHVQISSGEYTQLTGRAGRRGIDVEGHSIVVWNPDLEP 455
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L PL S F +Y M NLLA Q GR E+ R+++
Sbjct: 456 EALAGLASKRTYPLNSSFRPTYNMSTNLLA-----------------QFGR--EQTRQIL 496
Query: 406 EQSFGNY 412
E SF Y
Sbjct: 497 ESSFAQY 503
>gi|415705273|ref|ZP_11460544.1| helicase [Gardnerella vaginalis 75712]
gi|388051995|gb|EIK75019.1| helicase [Gardnerella vaginalis 75712]
Length = 879
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 211/390 (54%), Gaps = 61/390 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRS 188
R+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 287 RKASYR-------NVNKRFSKGKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL-- 337
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALK 230
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L
Sbjct: 338 -DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKAL 396
Query: 231 RF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+
Sbjct: 397 RFERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGL 446
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 447 NMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAA 506
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
L V PL S F ++ M +NLL + V
Sbjct: 507 SLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 45/280 (16%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G ++ + + GD R
Sbjct: 772 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLNILQNTDITGGDFVRFA 831
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
+R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 832 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 871
>gi|385801688|ref|YP_005838091.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
gi|333394149|gb|AEF32067.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
Length = 879
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 211/390 (54%), Gaps = 61/390 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRS 188
R+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 287 RKASYR-------NVNKRFSKCKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL-- 337
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALK 230
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L
Sbjct: 338 -DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKAL 396
Query: 231 RF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+
Sbjct: 397 RFERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGL 446
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 447 NMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAA 506
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
L V PL S F ++ M +NLL + V
Sbjct: 507 SLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 45/280 (16%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 772 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 831
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
+R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 832 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 871
>gi|413938776|gb|AFW73327.1| hypothetical protein ZEAMMB73_223871 [Zea mays]
Length = 151
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 133/151 (88%)
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
MVLRNK+LLDLKP+QLAAVC SLVSEGIK+R WKN+S +YEPS+ V VI+ L+E R+S
Sbjct: 1 MVLRNKVLLDLKPSQLAAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVISYLEEQRNSL 60
Query: 834 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
++LQE+H V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRR+IDLLAQI
Sbjct: 61 IDLQERHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRSIDLLAQI 120
Query: 894 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 924
PKLPD+D LQKNA A +VMDR PISELAG
Sbjct: 121 PKLPDIDPVLQKNAQIACSVMDRVPISELAG 151
>gi|220912683|ref|YP_002487992.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219859561|gb|ACL39903.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 984
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 160/444 (36%), Positives = 221/444 (49%), Gaps = 67/444 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ++ LS
Sbjct: 146 VVVMTTEVLRNMLYADSATLDDLGYVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLS 205
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWY----------FSTKTA---LLPLLD 108
ATV+NA+E W+ + G T++I S RPVPL + F+ +T + P +D
Sbjct: 206 ATVSNAEEFGAWLDTVRGDTDIIVSEHRPVPLWQHVMVGRRIMDLFAGETTFDEIAPAVD 265
Query: 109 -------------EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 155
+ K NR +N L+ + + + G R R R N+
Sbjct: 266 AAEDDQPKTVSGKSRNKETNRGFDVNPELLTVARNEGQQ--GFRSRPGRVQRGRRGNDRP 323
Query: 156 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 215
+ +RR+ PQVI +L + D+LPAI FIF+R GCDAAV
Sbjct: 324 PRPAEQ-------TGVRRASRPQVIASLDRM---DLLPAITFIFSRAGCDAAVAQCVASG 373
Query: 216 LLDECEMSE---VELALKRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIE 268
L E + E + R + PD + GLL+G AAHHAG LP +K +E
Sbjct: 374 LWLTTEKEQRIIAERVDEAGRDIPPDDLDVLGFWSWRDGLLRGFAAHHAGMLPTFKEVVE 433
Query: 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328
+LF GLVK VFATETLA G+NMPAR+ VL L K + +T+ E Q+ GRAGRRG
Sbjct: 434 KLFADGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRAGRRG 493
Query: 329 IDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDD 388
ID GH V++ P L PL S F +Y M +NLLA
Sbjct: 494 IDVEGHAVVLWQPGGDPTAVAGLASRRTYPLNSSFRPTYNMSINLLA------------- 540
Query: 389 MKALQAGRSLEEARKLVEQSFGNY 412
Q GR+ AR+++E SF +
Sbjct: 541 ----QFGRA--RAREILESSFAQF 558
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 763
E+ +L+ + L ++I+ + K F R+ +V+ LD + I P G+
Sbjct: 766 ERWWKLRRETDNLVRQIQGRTNTIAKTFDRVCDVLSAYGYLDASDDGRLAISPDGQRLRR 825
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 817
I GE +L ++ LR DL ++AA+ + LV + G++ R+ PS
Sbjct: 826 IYGEKDLLISQSLRLGAFDDLDAVEVAALASVLVYQAKREDRGLRPRM---------PSV 876
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ ++++ S+ +++E + + + + + WA G ++++ L G
Sbjct: 877 SLETSVDIVVREWSALEDVEEANKLPLTGEPELGLVWPIYKWARGRHLQDVLSGTDLAAG 936
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
D R +++ +DLL QI K+P ++ RL + +A N++ R
Sbjct: 937 DFVRWVKQVVDLLDQIAKIPGLEPRLARLCGEAINLIRR 975
>gi|365827302|ref|ZP_09369166.1| hypothetical protein HMPREF0975_00949 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265308|gb|EHM95081.1| hypothetical protein HMPREF0975_00949 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 982
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 203/391 (51%), Gaps = 37/391 (9%)
Query: 19 SGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 75
SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LSATV+NA+E W+G
Sbjct: 133 SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLSATVSNAEEFGDWLG 192
Query: 76 QIHGKTELITSSRRPVPLTWYFSTKTALLPLL------------------DEKGKHMNRK 117
Q+ G+T ++ S +RPVPLT + LLPL ++ +
Sbjct: 193 QVRGRTAVVVSEKRPVPLTQHMMVGRRLLPLYSRPIDVAELTGAAGTAESEQSEQAAQPP 252
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVT---SFGQHQLSKNSINAIR-- 172
L+ L+ + GGS + + R ++ S G + + R
Sbjct: 253 LNPELLKAVKQARRAAASGGSSKNSYRSRGGGSARGPQPWKRSAGGARAPRRGEGGARTA 312
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK 230
R + P + + L + +LPAI F+F+R GC+ AV + +L E E + + ++
Sbjct: 313 RLKPPSRLQVVKALEAARLLPAIVFVFSRAGCEQAVNQVVSTGVDLTTEAEAARIREVIE 372
Query: 231 RFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
R P + + G L +GVAAHHAG LP++K +EELF GLVKVV+ATE
Sbjct: 373 RRTADIPAG--DLGVLGFRFWAHALERGVAAHHAGLLPVFKETVEELFSAGLVKVVYATE 430
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID GH V++ T
Sbjct: 431 TLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDIEGHAVVLATDDL 490
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
L PLVS F +Y M +NLL
Sbjct: 491 EPATVSSLASRRTYPLVSAFRPTYNMAVNLL 521
>gi|415702258|ref|ZP_11458480.1| helicase [Gardnerella vaginalis 284V]
gi|388053587|gb|EIK76567.1| helicase [Gardnerella vaginalis 284V]
Length = 883
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 213/396 (53%), Gaps = 69/396 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDT 182
R+ S + N+ F + + SKN + A+R + P+ VID
Sbjct: 287 RKASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDE 337
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSE 224
L +L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 338 LDYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSK 394
Query: 225 VELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATE
Sbjct: 395 SDLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVEALFERGLIKVIFATE 444
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 445 TLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDF 504
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ L V PL S F ++ M +NLL + V
Sbjct: 505 DPSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 45/284 (15%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 776 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 835
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 920
+R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 836 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|308235031|ref|ZP_07665768.1| DEAD/DEAH box helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114706|ref|YP_003985927.1| helicase [Gardnerella vaginalis ATCC 14019]
gi|310946200|gb|ADP38904.1| helicase [Gardnerella vaginalis ATCC 14019]
Length = 883
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 213/396 (53%), Gaps = 69/396 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDT 182
R+ S + N+ F + + SKN + A+R + P+ VID
Sbjct: 287 RKASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDE 337
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSE 224
L +L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 338 LDYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSK 394
Query: 225 VELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATE
Sbjct: 395 SDLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVEALFERGLIKVIFATE 444
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 445 TLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDF 504
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ L V PL S F ++ M +NLL + V
Sbjct: 505 DPSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 45/284 (15%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 776 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 835
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 920
+R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 836 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|415707209|ref|ZP_11462056.1| helicase [Gardnerella vaginalis 0288E]
gi|388054209|gb|EIK77154.1| helicase [Gardnerella vaginalis 0288E]
Length = 883
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 213/396 (53%), Gaps = 69/396 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDT 182
R+ S + N+ F + + SKN + A+R + P+ VID
Sbjct: 287 RKASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDE 337
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSE 224
L +L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 338 LDYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSK 394
Query: 225 VELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATE
Sbjct: 395 SDLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATE 444
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 445 TLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDF 504
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ L V PL S F ++ M +NLL + V
Sbjct: 505 DPSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 45/280 (16%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ + F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 776 LKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 835
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
+R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 836 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 875
>gi|323450920|gb|EGB06799.1| hypothetical protein AURANDRAFT_28826, partial [Aureococcus
anophagefferens]
Length = 536
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 214/402 (53%), Gaps = 65/402 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV +V DE HY++D RGTVWEE ++ CP +I+ LSATV+NA +AGW+ IHG T+
Sbjct: 187 DVFAVVFDEFHYMNDAQRGTVWEESVVGCPATARIVALSATVSNARSVAGWMASIHGPTD 246
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
++ + RPVPL + F+ ++PL R L + +E P +
Sbjct: 247 VVETDFRPVPLRYEFAGGGEVVPLF--------RSADLGRHARARAEAAPAQP------R 292
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+R+ A G+ + + R ++ L +L+ RD LPAI+F+F+R+
Sbjct: 293 ARQAA-----------GKTEARRPRQIRPPRGEI------LKNLQKRDRLPAIFFVFSRK 335
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFR--------ILYPDAVREPAIKGLLKGVAA 254
GC+ +C L + E LA KR R + D+ RE + L +GVAA
Sbjct: 336 GCE---NEAANCGSLQLLNVDEETLARKRIRAWALENEDVARLDSERE-RVDLLTRGVAA 391
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LP +K+ +EELF+ GLVK FATETLAAG+N+PART V++SL KR G LT+
Sbjct: 392 HHAGLLPQYKTLVEELFRDGLVKACFATETLAAGVNLPARTTVVTSLVKRGDDGMEPLTT 451
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQFTASYGMVL 371
+ L QMAGRAGRRG D G VV+ + G + ++L + V P+ S+F SYG+
Sbjct: 452 SALLQMAGRAGRRGKDAAGTVVVARGRKFGDRDAGLARRVLLSDVLPIASKFAPSYGVAC 511
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
LL G LE R +VE+SFG+Y+
Sbjct: 512 ALLRGG-------------------DLERCRAVVERSFGSYL 534
>gi|415711435|ref|ZP_11464172.1| helicase [Gardnerella vaginalis 55152]
gi|388058269|gb|EIK81066.1| helicase [Gardnerella vaginalis 55152]
Length = 878
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 208/382 (54%), Gaps = 46/382 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSR 139
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ R
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLR 286
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIW 196
R+ S ++ + S SK++ + P+ VID L +L DMLP I+
Sbjct: 287 RKASYRNTNKRFRKGKFSNKYDNSSKSNRGEVAVRHTPKRWAVIDELDYL---DMLPGIY 343
Query: 197 FIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKRF-RILYP 237
FIF+R GCD AVQ + L + E ++S+ +L RF R Y
Sbjct: 344 FIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALRFERFRY- 402
Query: 238 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+NMPAR+ V
Sbjct: 403 ---------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLNMPARSVV 453
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L V
Sbjct: 454 VEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAASLSSKRVY 513
Query: 358 PLVSQFTASYGMVLNLLAGAKV 379
PL S F ++ M +NLL + V
Sbjct: 514 PLHSSFVPTFNMAVNLLNNSDV 535
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 45/280 (16%)
Query: 674 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 707
+QR K+ + RT+ FKE K +DT++ E
Sbjct: 599 DQRRKLKHTIFASETDRTKAFKELDKTIDTLRNEERNHPCAGCPDIQGHLHWGYYWAREM 658
Query: 708 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 659 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 713
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 714 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPVGGEPRRYPGGLNAPVFNTV 770
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
+ F+ + + + ++ LD M+ WA G +++ + + GD R
Sbjct: 771 LRMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFA 830
Query: 884 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
+R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 831 KRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 870
>gi|415716479|ref|ZP_11466471.1| helicase [Gardnerella vaginalis 1400E]
gi|388057096|gb|EIK79929.1| helicase [Gardnerella vaginalis 1400E]
Length = 883
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 204/386 (52%), Gaps = 49/386 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 171 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVD 230
Query: 87 SRRPVPLTWYF------STKTALLPLLD-----EKGKHMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ LL L D H+N L+ Q + ++ +
Sbjct: 231 EHRPVPLERHVIIQKDGRTEPELLNLYDVDKNGNSTNHVNLALTRKIAQWENASLR--RK 288
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDML 192
R N R D S N ++ + SK++ + P+ VID L +L DML
Sbjct: 289 ASYRNTNKRFRKDKFSKNKFSNRYDNS-SKSNRGEVAVRHTPKRWAVIDELDYL---DML 344
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKRF-R 233
P I+FIF+R GCD AVQ + L + E ++S+ +L RF R
Sbjct: 345 PGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALRFER 404
Query: 234 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+NMPA
Sbjct: 405 FRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLNMPA 454
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
R+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L
Sbjct: 455 RSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAASLSS 514
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKV 379
V PL S F ++ M +NLL + V
Sbjct: 515 KRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G+ + E ++ A + I +L P QL + ++LV E R P
Sbjct: 710 GQLLRRLYNELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGG 766
Query: 818 TVINVINVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
V N + + + F+ + + + ++ LD M+ WA G +++ + +
Sbjct: 767 LNAPVFNTVLKMKELFIRISDMCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDI 826
Query: 875 DDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDR 916
GD R +R IDLL Q+ LP+VD L NA +A+ +++R
Sbjct: 827 TGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINR 875
>gi|227504325|ref|ZP_03934374.1| helicase [Corynebacterium striatum ATCC 6940]
gi|227198973|gb|EEI79021.1| helicase [Corynebacterium striatum ATCC 6940]
Length = 939
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 165/472 (34%), Positives = 230/472 (48%), Gaps = 64/472 (13%)
Query: 2 QLRIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 58
Q I+V + V M+ +ESG D + +V+DEVH+L+D SRG VWEE+I+ + V II
Sbjct: 100 QAEILVMTTEVLRNMIYAESGALDRLSHVVMDEVHFLADASRGAVWEEVILNLHESVSII 159
Query: 59 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRK 117
LSATV+N++E W+ + G T +I S RPVPL + + PL + E G +N +
Sbjct: 160 GLSATVSNSEEFGEWLSAVRGDTTVIVSDHRPVPLDQWMMIGRKIYPLFEPESGGQVNAE 219
Query: 118 LSLNYLQLSTSEVK-----PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
L+ +L + + G R R K D +S N G+ S+ + R
Sbjct: 220 LARRIRRLEAGDSDDGRNDAHSGQGFRARARHKGGDRDSRNSRGGRGRSGASRPQ-DRYR 278
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
P+ TL L+ DMLPAI FIF+R GCD A+ Q L +L E SE
Sbjct: 279 PLGRPE---TLQVLQGMDMLPAITFIFSRAGCDGALHQCLRSRMVLTTQEESERIKAIID 335
Query: 225 --VE---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
VE L KR+R + L +G AAHHAG LP ++ +E+LF +
Sbjct: 336 AGVEGIPEEDLQVLDFKRWR------------EALSRGFAAHHAGMLPAFRHIVEDLFVQ 383
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GLV+ VFATETLA GINMPART +L L K + LT + Q+ GRAGRRGID G
Sbjct: 384 GLVRAVFATETLALGINMPARTVILEKLVKFNGEAHVDLTPGQYTQLTGRAGRRGIDTIG 443
Query: 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393
+ V+ P L PL+S F Y M +NLL
Sbjct: 444 NAVVQWAPAMDPHAVAGLASTRTYPLISTFAPGYNMAINLLGML---------------- 487
Query: 394 AGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
EE+ +L+E+SF + ++ E+ K + L +++ DDAID
Sbjct: 488 ---GFEESLRLLEKSFAQFQADGSVVEETREIEKAEHRVRELRNQL-DDAID 535
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 41/268 (15%)
Query: 664 EYHDAVENYKEQ------RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 717
E DA+ N+ R ++A + +K+AR E ++ +K+ V+ + + + R
Sbjct: 691 ELRDAIRNHPAHSWPATDREQLAGIAQKLARRE--RDLEKVSKKVERATDTLGKTFGRIV 748
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 777
L ++ +E G+ E R VI GE + I E++L +A L+
Sbjct: 749 DLLSEMDYVEFEGFGEDRR---------------PVITDEGERLSQIHSESDLLVAQCLK 793
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY-EPSTTVINVINVLDEHRSSFLEL 836
I +L PA+LA V ASL L++N EP + + ++ + EL
Sbjct: 794 RGIWNELDPAELAGV-ASLC-------LFENRKETRGEPEAATDAMADAMEATYRIYTEL 845
Query: 837 ---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTID 888
+ +H + ++ F+ + WA+G M L GD R R+ +D
Sbjct: 846 IADEARHNLPRTREPEAGFALAIHQWAAGAPLGYCMAAANEAGAELTPGDFVRWCRQVVD 905
Query: 889 LLAQIPKLPDVDQRLQKNAVDASNVMDR 916
+L QI K ++ +++NA A + + R
Sbjct: 906 MLQQIAKT-GYEEDIRRNARRAIDAIQR 932
>gi|163840768|ref|YP_001625173.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954244|gb|ABY23759.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 954
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 175/554 (31%), Positives = 263/554 (47%), Gaps = 86/554 (15%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + + L D+ +++DEVHYL+D RG VWEE+II+ P EVQ++ LS
Sbjct: 132 IVVMTTEVLRNMLYAGSEALDDLAFVIMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLS 191
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWY----------FSTKTAL-------- 103
ATV+NA+E W+ + G T++I S RPVPL + F+ T+
Sbjct: 192 ATVSNAEEFGAWLDTVRGSTDIIVSEHRPVPLWQHVMVGKDIVDLFAGDTSFDQLAVVDK 251
Query: 104 --LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 161
+P ++ + + R S N L+ S + K G ++ N+RK++ +
Sbjct: 252 NEVPAVNTELLQLARTESENRLRGRFSHGRGRKQSGGKQWNNRKNS-----------ARQ 300
Query: 162 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 221
++ A R+QV +D D+LPAI+FIF+R CDAAV+ D L+ E
Sbjct: 301 DAPQSPGKAASRAQVILALDRA------DLLPAIYFIFSRAVCDAAVRQCVDAGLMLTTE 354
Query: 222 MSEVELALKRFRILYPDAVREPA--------IKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
E+ R + D + G+L+GVAAHHAG LP +K +E LF
Sbjct: 355 AERQEIT-ARIGMASEDIPSDDLDVLGFWSWRDGMLRGVAAHHAGMLPTFKEVVESLFAD 413
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GLV+ VFATETLA G+NMPAR+ VL L K + +++ E Q+ GRAGRRGID G
Sbjct: 414 GLVRAVFATETLALGVNMPARSVVLEKLEKFNGEAHVNVSAGEYTQLTGRAGRRGIDIEG 473
Query: 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393
H V++ P L PL S F +Y M +NL+A Q
Sbjct: 474 HAVVLWQPGTDPGAVAGLALRRTYPLNSSFRPTYNMSINLIA-----------------Q 516
Query: 394 AGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRK 447
GRS A +++E SF + VG +++++E + D +T + D A +
Sbjct: 517 FGRS--RAHEILESSFAQFQADRSVVGLARQVSSREE--ALAGYQDSMTCHLGDFAEYSR 572
Query: 448 SRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQ 507
RR LS+ E A +++ +A + E L R A D++ + G +P +
Sbjct: 573 LRRELSDV---ETAASKQQNRARRGIVDE-----SLARLRA-GDVI-EISAGRMPGFAVV 622
Query: 508 YKDSEGVEHSVPAV 521
+ V P V
Sbjct: 623 LNNDTQVHEPRPTV 636
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSS 811
G+ I GE +L +A+ +R L DL +LAA ++LV + G++ R+
Sbjct: 790 GQRLRRIYGEKDLLIALCIREGALADLDAVELAAFASALVYQAKREERGLRPRM------ 843
Query: 812 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREM 868
PS ++ I+++ + S+ LE QE ++P + + G+V WA G +
Sbjct: 844 ---PSPSIDAAIDIVVQQWSA-LEDQESQS-KLPLTSEPEL-GLVWPMFKWARGRHLEAV 897
Query: 869 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 910
+ L GD R ++ IDLL Q+ +P + ++ N V A
Sbjct: 898 LEGTDLAAGDFFRWTKQVIDLLDQLASVPGLPIEIRSNCVAA 939
>gi|336178159|ref|YP_004583534.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334859139|gb|AEH09613.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 934
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/496 (34%), Positives = 230/496 (46%), Gaps = 52/496 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P VQ++ LSATV+NA+E A W+ + G T ++ S
Sbjct: 148 VVMDEVHYLADRQRGAVWEEVIIHLPAYVQLVSLSATVSNAEEFADWLITVRGHTRVVVS 207
Query: 87 SRRPVPLTWYFSTKTALL------PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
RPVPL + L PL + H R V P +R
Sbjct: 208 EHRPVPLWQHVLADRQLHDLFVAGPLAPDGAPHTQR-----------DAVAPETSAAARP 256
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + ++ + + R VP + + HL +LPAI F+F+
Sbjct: 257 RINPDLIRLSRQDSRRPPRPRGRGGAAAAPRERPWVPSRPEVVRHLDRAGLLPAITFVFS 316
Query: 201 RRGCDAAVQYLEDCNL---LDECEMSEVELALKRFRILYPDAVREPA----IKGLLKGVA 253
R GCDAAV L E S E R + D +R + GL G+A
Sbjct: 317 RAGCDAAVSACVRAGLRLTTTEERQSIREYVRARTASIPADDLRVLGYWEWLDGLECGIA 376
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLV+ VFATETLA GINMPART VL LSK R +T
Sbjct: 377 AHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLSKFNGETRADIT 436
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V++ P L A PL S F SY M +NL
Sbjct: 437 PGEYTQLTGRAGRRGIDIEGHAVVLWQPGLDPVALAGLASARTYPLRSSFRPSYNMAVNL 496
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ + GR+ EAR ++E SF + ++ ++ + D
Sbjct: 497 VG-----------------RLGRT--EARSVLESSFAQFQADRAVVGLARQVRRNSGALD 537
Query: 434 VLTSE-------ISDDAIDRKSRRLLSEAAYKEMANLQ--EELKAEKRFRTELRRRMELK 484
L +E +S+ A R+ R A +E AN + E L+A R R R+
Sbjct: 538 ELAAELTCEQGSVSEYARLREEIRAREAALSREGANRRRAEALEALSRLRVGDVVRVPAG 597
Query: 485 RFSALKDILKDFENGH 500
R S L +L NG+
Sbjct: 598 RRSGLAVVLDPGVNGY 613
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
++ +L+ + L +RIE + K F R+ + L +T + +G + +
Sbjct: 719 DRHAKLRRETDTLQRRIENRTNTVAKIFDRVCAALETLDYLRGDT--VTDVGALLSRVYT 776
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR+ + L PA LAA ++LV E R + ++ + + +
Sbjct: 777 EQDLLVAECLRDGVWEGLSPAALAAAVSTLVYE---PRGEETAATKTPGDPGLRDALTAT 833
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD--DGDLARLLR 884
+++ HG++ + F+ + WASG + +++ D LD GD R +R
Sbjct: 834 ARIAGRLRDVEAAHGLDFLRPPEPGFAWVAFGWASGQSLEKVLTDSGLDLTAGDFVRWMR 893
Query: 885 RTIDLLAQI 893
+ IDLL QI
Sbjct: 894 QLIDLLDQI 902
>gi|305681301|ref|ZP_07404108.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
gi|305659506|gb|EFM49006.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
Length = 905
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 245/507 (48%), Gaps = 73/507 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
I+V + V M+ ++S FD + +V+DE+HYLSD +RG+VWEEII+ ++II LS
Sbjct: 100 ILVMTTEVLRNMIYAQSPTFDRLTHVVMDEIHYLSDKTRGSVWEEIILGLHDSIKIIGLS 159
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N++E W+ + G T++I + RPVPL + T L PL + +N +L+ +
Sbjct: 160 ATVSNSEEFGHWLTTVRGNTDIIVTDHRPVPLNQWMLVSTTLHPLFEPNTTTLNHQLASH 219
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+L + Y+D R N N+ Q K + + R +V +
Sbjct: 220 INKLEHT----YQDNHPTFRTR----STNPNHTT------QPPKPNYRPLGRPEVTTI-- 263
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAA-------------------VQYLEDCNLLDECEM 222
L + +MLPAI FIF+R GCD+A ++++ D N+ E
Sbjct: 264 ----LAANNMLPAITFIFSRIGCDSALAQCLRSRINLTTPEETNRIKHIIDTNITTIPEE 319
Query: 223 SEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
L + +R L +G AAHHAG LP ++ +EELF GL+KVVFAT
Sbjct: 320 DLKVLGYRNWR------------TALTRGFAAHHAGMLPAFRHIVEELFVNGLLKVVFAT 367
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART +L L K G + LT + Q+ GRAGRRGID G+ V+ +P
Sbjct: 368 ETLALGINMPARTVILEKLVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPA 427
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 402
++ L PLVS FT Y M +NLL K M A
Sbjct: 428 MDPQQVANLASTRTYPLVSTFTPGYNMSVNLL---KTM----------------GFTAAH 468
Query: 403 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 462
L+E SF + + ++ ++ K ++ L ++ ++ R+ A + E
Sbjct: 469 HLLEMSFAQFQANKSIVGHAHQVEKAEQRVQELEQQLEEELAARQVPSEQPLAEFLEYMQ 528
Query: 463 LQEELKAEKRFRTELRRRMELKRFSAL 489
LQ +L E+R +LR R + +A+
Sbjct: 529 LQRDLSLEERNAKKLRIRQRREAVTAV 555
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 695 YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL-----DI 749
Y + VD + I R++ +L ++ + KEF RI ++ E + D
Sbjct: 672 YWQQVDDLTQIGHDIIRVRTEVDKLHATVDASVDTLGKEFDRILGLLAELDYVEYVDGDR 731
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN 809
N + GE A I E +L +A LR I L PA+LA V + E + +
Sbjct: 732 NNPRVSEEGERLALIHNECDLLVAQCLRRGIWDGLDPAELAGVVSLCTFENRRETRGEPI 791
Query: 810 SSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM 869
+ + + N I + +E S + +H + DS F+ + WA+G M
Sbjct: 792 GATDAMADAMDNTIRLWEELHSD----ERRHQLPETRYPDSGFALAIHQWAAGAPLGYCM 847
Query: 870 MDCA-----LDDGDLARLLRRTIDLLAQIPK 895
A L GD R R+ +DLL Q+ K
Sbjct: 848 AAAAECGAELTPGDFVRQARQVVDLLEQVRK 878
>gi|50954553|ref|YP_061841.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951035|gb|AAT88736.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 811
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 226/421 (53%), Gaps = 54/421 (12%)
Query: 4 RIVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P V+++ L
Sbjct: 122 RIVVMTTEVLRNMLYADSDLLGDLAYVVMDEVHYLADRFRGAVWEEVIIHLPPAVRMVSL 181
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G T+++ S RPVPL + ++ L+ L D G +++
Sbjct: 182 SATVSNAEEFGDWLQAVRGDTDVVVSEERPVPLEQHILMRSKLIDLFDSSGLAAANRVNP 241
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQ 178
+Q++ S G R +SR+ D+ G++ ++ R R+++ +
Sbjct: 242 ELVQMARS--------GGRVLSSRQRRDI---------GRYHSRGGRPDSFRMNRAEIVR 284
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVE-LALKRFRIL 235
++D ++LPAI+F+F+R GCDAAV+ L ++ E ++ + +R R L
Sbjct: 285 LLD------EHNLLPAIFFLFSRNGCDAAVRQTLRAGVRLTEQRERDDIRSIVEERCRTL 338
Query: 236 YPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+ + ++GL GVAAHHAG LP +K +EELF+R LVKVVFATETLA GINM
Sbjct: 339 MDEDLAVLGYWEWLEGLEHGVAAHHAGMLPAFKEVVEELFRRKLVKVVFATETLALGINM 398
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL L K R+ +T E Q+ GRAGRRGID G+ V+ + L
Sbjct: 399 PARTVVLEKLEKFNGESRVPITPGEYTQLTGRAGRRGIDVEGNSVIQWEDGLDPQSVASL 458
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F +Y M +NL+ Q GR + R+++E SF
Sbjct: 459 ASRRSYPLNSSFRPTYNMAVNLID-----------------QFGR--QRTREILESSFAQ 499
Query: 412 Y 412
+
Sbjct: 500 F 500
>gi|400974533|ref|ZP_10801764.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 810
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 202/381 (53%), Gaps = 31/381 (8%)
Query: 4 RIVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L ++ +V+DEVH+L D RG VWEE+II+ P +V ++ L
Sbjct: 119 RIVVMTTEVLRNMLYAKSDLLRNLSTVVMDEVHFLGDRFRGAVWEEVIIHLPDDVHMVSL 178
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G TE+I S +RPVPL + + L+ L D G +++
Sbjct: 179 SATVSNAEEFGDWLQAVRGDTEVIVSEQRPVPLEQHVLVSSKLIDLFDSSGLAATNRVNP 238
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+Q++ R R + N N G+++ R +
Sbjct: 239 ELVQMA-------------RFGGRSQSVRNRKNS----GRYESRGGRPARTRMDRA---- 277
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYP 237
D + L S++++PAI+FIF+R GCD AV + L E E+ E+ R R L
Sbjct: 278 DVVAMLASKNLVPAIFFIFSRMGCDQAVNQVLRAGVRLTTVQERDEIREIVEARCRTLLD 337
Query: 238 DAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + + GL +GVAAHHAG LP +K +EELFQR LVK VFATETLA GINMPA
Sbjct: 338 EDLAVLGYWEWLNGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPA 397
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K R+ +T E Q+ GRAGRRGID GH V+ + L
Sbjct: 398 RTVVLEKLEKFNGEARVPITPGEYTQLTGRAGRRGIDIEGHSVIQWVDGLDPQAVASLAS 457
Query: 354 AGVEPLVSQFTASYGMVLNLL 374
PL S F +Y M +NL+
Sbjct: 458 RRTYPLNSSFKPTYNMAVNLI 478
>gi|88856568|ref|ZP_01131225.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88814222|gb|EAR24087.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 810
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 206/381 (54%), Gaps = 31/381 (8%)
Query: 4 RIVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
RIVV + V M+ ++S L ++ +V+DEVH+L D RG VWEE+II+ P +V+++ L
Sbjct: 119 RIVVMTTEVLRNMLYAKSDLLKNLSTVVMDEVHFLGDRFRGAVWEEVIIHLPDDVRMVSL 178
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G TE+I S RPVPL + + L+ L D G +++
Sbjct: 179 SATVSNAEEFGDWLQAVRGDTEVIVSEERPVPLEQHVLVSSKLVDLFDSSGLAATNRVNP 238
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+Q++ R R + N N +S + + + + + R+ V ++
Sbjct: 239 ELVQMA-------------RFGGRSQSVRNRKN--SSRYESRGGRPARTRMDRADVVAML 283
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYP 237
D S++++PAI+FIF+R GCD AV + L E E+ E+ R R L
Sbjct: 284 D------SKNLVPAIFFIFSRMGCDQAVNQVLRAGVRLTTVQERDEIREIVEARCRTLLD 337
Query: 238 DAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + + GL +GVAAHHAG LP +K +EELFQ+ LVK VFATETLA GINMPA
Sbjct: 338 EDLAVLGYWDWLNGLERGVAAHHAGMLPAFKEVVEELFQKKLVKAVFATETLALGINMPA 397
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K R+ +T E Q+ GRAGRRGID GH V+ + L
Sbjct: 398 RTVVLEKLEKFNGEARVPITPGEYTQLTGRAGRRGIDIEGHSVIQWVDGLDPQAVASLAS 457
Query: 354 AGVEPLVSQFTASYGMVLNLL 374
PL S F +Y M +NL+
Sbjct: 458 RRTYPLNSSFKPTYNMAVNLI 478
>gi|119716881|ref|YP_923846.1| DSH domain-containing protein [Nocardioides sp. JS614]
gi|119537542|gb|ABL82159.1| DSH domain protein [Nocardioides sp. JS614]
Length = 936
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 206/428 (48%), Gaps = 63/428 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYL+D SRG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 142 LLGLGFVVMDEVHYLADRSRGAVWEEVIIHLPESVSLVSLSATVSNAEEFGEWLATVRGD 201
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGS 138
T I RRPVPL + LL L ++ +K +D S
Sbjct: 202 TTTIVEERRPVPLYQHVMVGRRLLDLFASSDVDAAAGFVKEGAPVNDELLKVARDDWASS 261
Query: 139 R---RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R RRN R G+ + + ++ RR +P D + L +LPAI
Sbjct: 262 RIKDRRNPR--------------GRSKPGQKNVGNGRRVWIPSRPDVIDRLDREGLLPAI 307
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA------ 244
FIF+R GCDAAV +C + V L R V E PA
Sbjct: 308 VFIFSRVGCDAAVT---------QCLNAGVRLTTPEERDTIYAYVEEACSDLPADDLHVL 358
Query: 245 -----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+ GL +GVAAHHAG LP++K +EELF RGL KVVFATETLA GINMPART V+
Sbjct: 359 GYHDFLDGLTRGVAAHHAGMLPVFKQCVEELFVRGLCKVVFATETLALGINMPARTVVIE 418
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
L+K +T E Q+ GRAGRRG+D GH V++ P E L PL
Sbjct: 419 KLTKWNGETHADITPGEYTQLTGRAGRRGLDVEGHGVVLWQPGTNPRELAGLASTRTYPL 478
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
S F SY M +NL+ Q GR E +R+L+EQSF + ++
Sbjct: 479 RSSFRPSYNMAVNLVH-----------------QFGR--ERSRELLEQSFAQFQADKAVV 519
Query: 420 AAKDELCK 427
+L K
Sbjct: 520 GLARQLRK 527
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 5/189 (2%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAI 764
E+ +L ++ L +R+EQ + ++F R+ V+ L D + G +
Sbjct: 717 ERYFKLDRDAQTLKRRVEQRTNTVARQFDRVCEVLTALGYLTGDGADAQVTERGSHLRRL 776
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
+ +L A +R+ + L P++LAA + LV E R + SS P V V+
Sbjct: 777 YSDMDLLAAESMRHGLWDALSPSELAAALSVLVFE---ARRPDDASSPRIPGGAVREVVG 833
Query: 825 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
+ S L+ H +E D F+ + WA G ++++ L GD R ++
Sbjct: 834 EMVRLWGSLEALERDHKLEFLRQPDLGFAWVAYRWAEGDDLDDVLVVSDLAAGDFVRWMK 893
Query: 885 RTIDLLAQI 893
+ +DL Q+
Sbjct: 894 QLVDLAGQV 902
>gi|415724577|ref|ZP_11469955.1| helicase [Gardnerella vaginalis 00703C2mash]
gi|388062373|gb|EIK84990.1| helicase [Gardnerella vaginalis 00703C2mash]
Length = 860
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 209/379 (55%), Gaps = 45/379 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T LI
Sbjct: 148 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGNTHLIVD 207
Query: 87 SRRPVPLTWYF------STKTALLPLLD--EKGKHMNR-KLSLN---------YLQLSTS 128
RPVPL + T+ LL L D + G NR L+L L+ +S
Sbjct: 208 EHRPVPLERHVIIQKDGQTEPELLNLYDTDKNGNATNRVNLALTRKLSQWENAALRKKSS 267
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWH 185
+ K R + RK D +S+ L KNS +++ P+ VID L +
Sbjct: 268 YLSKDKRFSKGRFSKRKSRDRSSD----------LQKNSKSSLTVRHTPKRWAVIDELDY 317
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSE----VELALKRFRILYPD 238
L +MLP I+FIF+R GCD AVQ + L DE EM E V+ + + ++ D
Sbjct: 318 L---NMLPGIYFIFSRSGCDQAVQQCLNAGLALTSDE-EMYEIRRIVDSMISQNKLSKSD 373
Query: 239 --AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+R + L +G AAHHAG + I++ +E LF+RGL+K++FATETLA G+NMPAR+
Sbjct: 374 LKALRFERFRYALEQGFAAHHAGMIAIFRHIVETLFERGLIKIIFATETLALGLNMPARS 433
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L
Sbjct: 434 VVVEKLVKYDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPAKAASLSSKR 493
Query: 356 VEPLVSQFTASYGMVLNLL 374
V PL S F ++ M +NLL
Sbjct: 494 VYPLHSSFVPTFNMAVNLL 512
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 734 FLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791
F RI NV+ L NT + G+ + E ++ A + I DL P +L +
Sbjct: 661 FDRICNVLCSLDYLKETGNTFALTNKGQLLRRLYNELDVVFAQAICEGIFNDLTPIELLS 720
Query: 792 VCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
+SLV E G + R + V N ++ L E + + ++
Sbjct: 721 CVSSLVYESRGPVGSEPRRYPGG-----LDGAVFNTVSRLKELFMRISNMCLNNHLDALK 775
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDV 899
LD ++ WA G +++ + + GD R +R IDLL Q+ LP+V
Sbjct: 776 SLDFGAVDLIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVLSDYLRILPNV 835
Query: 900 DQRLQKNAVDASNVMDRPPIS 920
D L A +A +++R ++
Sbjct: 836 DDSLAHKAYEAVQIINRGVVA 856
>gi|400534276|ref|ZP_10797814.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT
3035]
gi|400332578|gb|EJO90073.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT
3035]
Length = 922
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 162/429 (37%), Positives = 222/429 (51%), Gaps = 60/429 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLS 119
ATV+NA+E GWI + G T ++ RPVPL + LL L D + +R+
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLLDLFDYDHERPAADRQPR 223
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
+N L S RR + + +D G + S+ + R P V
Sbjct: 224 VNPELLRHI---------SHRREADRMSDWQPRRQAGRGGAGRPSRPRL--YRTPSRPDV 272
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELA 228
I TL S +LPAI F+F+R GCDAAVQ L+ + +++EV +LA
Sbjct: 273 IATL---DSEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLA 329
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+L RE GLL+G+AAHHAG LP+++ +EELF GLV+ VFATETLA G
Sbjct: 330 DADLGVLGYYEWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVQAVFATETLALG 385
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 386 INMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEP 445
Query: 349 CKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARK 403
+ AG+ PL S F SY M +NL+ Q G E+A +
Sbjct: 446 SAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHR 484
Query: 404 LVEQSFGNY 412
L+EQSF Y
Sbjct: 485 LLEQSFAQY 493
>gi|415721039|ref|ZP_11468283.1| helicase [Gardnerella vaginalis 00703Bmash]
gi|388061300|gb|EIK83957.1| helicase [Gardnerella vaginalis 00703Bmash]
Length = 860
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 209/379 (55%), Gaps = 45/379 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T LI
Sbjct: 148 VVLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGNTHLIVD 207
Query: 87 SRRPVPLTWYF------STKTALLPLLD--EKGKHMNR-KLSLN---------YLQLSTS 128
RPVPL + T+ LL L D + G NR L+L L+ +S
Sbjct: 208 EHRPVPLERHVIIQKDGQTEPELLNLYDSDKNGNPTNRVNLALTRKLSQWENAALRKKSS 267
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWH 185
+ K R + RK D +S+ L KNS +++ P+ VID L +
Sbjct: 268 YLSKDKRFSKGRFSKRKSRDRSSD----------LQKNSKSSLTVRHTPKRWAVIDELDY 317
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSE----VELALKRFRILYPD 238
L +MLP I+FIF+R GCD AVQ + L DE EM E V+ + + ++ D
Sbjct: 318 L---NMLPGIYFIFSRSGCDQAVQQCLNAGLALTSDE-EMYEIRRIVDSMISQNKLSKSD 373
Query: 239 --AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
A+R + L +G AAHHAG + I++ +E LF+RGL+K++FATETLA G+NMPAR+
Sbjct: 374 LKALRFERFRYALEQGFAAHHAGMIAIFRHIVETLFERGLIKIIFATETLALGLNMPARS 433
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L
Sbjct: 434 VVVEKLVKYDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPAKAASLSSKR 493
Query: 356 VEPLVSQFTASYGMVLNLL 374
V PL S F ++ M +NLL
Sbjct: 494 VYPLHSSFVPTFNMAVNLL 512
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 734 FLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791
F RI NV+ L NT + G+ + E ++ A + I DL P +L +
Sbjct: 661 FDRICNVLCSLDYLKETGNTFALTNKGQLLRRLYNELDVVFAQAICEGIFNDLTPIELLS 720
Query: 792 VCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
+SLV E G++ R + V N ++ L E + + ++
Sbjct: 721 CVSSLVYESRGPVGLEPRRYPGG-----LDGAVFNTVSRLKELFMRISNMCLNNHLDALK 775
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDV 899
LD ++ WA G +++ + + GD R +R IDLL Q+ LP+V
Sbjct: 776 SLDFGAVDLIYDWARGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVLSDYLRILPNV 835
Query: 900 DQRLQKNAVDASNVMDRPPIS 920
D L A +A +++R ++
Sbjct: 836 DDSLAHKAYEAVQIINRGVVA 856
>gi|300781203|ref|ZP_07091057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
gi|300532910|gb|EFK53971.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
Length = 918
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 239/491 (48%), Gaps = 70/491 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ + S D + +V+DE+HYL+D RG VWEEII+ + +II LS
Sbjct: 106 IVVMTTEVLRNMIYAGSSALDRLSHVVMDEIHYLADRDRGAVWEEIILNLEESARIIGLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD----EKGKHMNRK 117
ATV+N++E W+ ++ G T +I S +RPVPL Y + ++PL + E ++N+
Sbjct: 166 ATVSNSEEFGEWLHEVRGDTAVIVSEKRPVPLNQYMMVQRKIMPLFEPGAVEAPGNVNKD 225
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
L +L + +D + + R A G + + IR P
Sbjct: 226 LERAIERLESGAANEGRDDFRQGKGFRSRAG----------GGRSGAPRGQDRIRPVGRP 275
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV----QYLEDCNLLDECE------------ 221
+V++ L R RDMLPAI FIF+R GCD A+ + ++ +E E
Sbjct: 276 EVVEAL---RGRDMLPAIVFIFSRAGCDGALFQCLRSRKELTTQEEAERIKQIADEGVEG 332
Query: 222 MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ E +L + FR L +G AAHHAG LP +K +E+LF GLV+VVFA
Sbjct: 333 IPEEDLEVLNFRQLR---------TAWSRGFAAHHAGLLPAFKHIVEQLFVEGLVRVVFA 383
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 384 TETLALGINMPARTVVLEKLVKFNGDAHVDLTPGQYTQLTGRAGRRGIDTIGNAVVQWAP 443
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
E L PL+S FT Y M +N+L M+ E++
Sbjct: 444 AMDPREVAGLASTRTYPLISLFTPGYNMAINMLQ----MN---------------GFEDS 484
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMA 461
+L+E+SF + ++ + + + + D L +E+ D A S L+ E
Sbjct: 485 IRLIEKSFAQFQTDRSVVGEVRTIERQRAKVDTLRAELIDAAGADVSDDLM------EYM 538
Query: 462 NLQEELKAEKR 472
NL+ +L E++
Sbjct: 539 NLRRDLTEEEK 549
>gi|375293114|ref|YP_005127653.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|376248519|ref|YP_005140463.1| putative helicase [Corynebacterium diphtheriae HC04]
gi|371582785|gb|AEX46451.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|372115087|gb|AEX81145.1| putative helicase [Corynebacterium diphtheriae HC04]
Length = 930
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 252/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y K GG R R+ M S+N + H+LS A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ TP
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D + + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+ V + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 SGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|419860816|ref|ZP_14383456.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|387982500|gb|EIK56001.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 930
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 252/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y K GG R R+ M S+N + H+LS A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ TP
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D + + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+ V + E + + +++ E + + N + + E + + ++ + + +
Sbjct: 797 SGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWKELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|375290896|ref|YP_005125436.1| putative helicase [Corynebacterium diphtheriae 241]
gi|376245728|ref|YP_005135967.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|376251310|ref|YP_005138191.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|376257127|ref|YP_005145018.1| putative helicase [Corynebacterium diphtheriae VA01]
gi|371580567|gb|AEX44234.1| putative helicase [Corynebacterium diphtheriae 241]
gi|372108358|gb|AEX74419.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|372112814|gb|AEX78873.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|372119644|gb|AEX83378.1| putative helicase [Corynebacterium diphtheriae VA01]
Length = 930
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 252/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y K GG R R+ M S+N + H+LS A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ TP
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D + + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 46.2 bits (108), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + E + + +++ E + + N + + +E S + ++ + I +
Sbjct: 797 AGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + + L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|359777026|ref|ZP_09280322.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
gi|359305623|dbj|GAB14151.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
Length = 964
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 217/447 (48%), Gaps = 70/447 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S LFD+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LS
Sbjct: 123 VVVMTTEVLRNMLYADSDTLFDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLS 182
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL-DEKGKHMNRKLSL 120
ATV+NA+E W+ + G T++I S RPVPL + ++ L E
Sbjct: 183 ATVSNAEEFGAWLDTVRGDTDVIVSEHRPVPLWQHVMVGRDIVDLFAGETTFDEIAPAGS 242
Query: 121 NYLQLSTSEVKPYKDGGSRRRN--------SRKHADMNSNNIVTSFGQH----------- 161
+ D G R SR + +N G+
Sbjct: 243 PAAAAALPLAPTPADAGQRGFEVNPELLTLSRAESQLNFQGRFGHGGRSQRRQQRQRYGD 302
Query: 162 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 221
+ + + +A+RR+ PQVI +L +D+LPAI FIF+R GCDAAV +C
Sbjct: 303 KPQQETRSAVRRASRPQVIASL---DRQDLLPAITFIFSRAGCDAAVA---------QCV 350
Query: 222 MSEVELALKRFRILYPDAVREPAI----------------KGLLKGVAAHHAGCLPIWKS 265
S + L +R + + V E +GLL+G+AAHHAG LP +K
Sbjct: 351 ASGLWLTTEREQGIIAQRVDEAGQDIPTDDLEVLGFWSWREGLLRGIAAHHAGMLPTFKE 410
Query: 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325
+E+LF GLVK VFATETLA G+NMPAR+ VL L K + +T+ E Q+ GRAG
Sbjct: 411 VVEKLFADGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRAG 470
Query: 326 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 385
RRGID GH V++ P L PL S F +Y M +NLLA
Sbjct: 471 RRGIDVEGHAVVLWQPGTDPAAVAGLASRRTYPLNSSFQPTYNMSINLLA---------- 520
Query: 386 SDDMKALQAGRSLEEARKLVEQSFGNY 412
Q GR AR+++E SF +
Sbjct: 521 -------QFGRP--RAREILESSFAQF 538
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETAAA 763
E+ +L+ + L ++I+ + K F R+ +V+ L+ I G+
Sbjct: 746 ERWWKLRKETDGLVRQIQGRTNTIAKTFDRVCDVLSAYGYLESTEDGQHRISTDGQRLRR 805
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 817
I GE +L ++ LR DL ++AA + LV + G++ R+ PS
Sbjct: 806 IYGEKDLLISQALRQGAFDDLDAVEVAAFASVLVYQAKREDRGLRPRM---------PSV 856
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCAL 874
++ ++++ S+ +++E++ ++P + + G++ WA G ++++ L
Sbjct: 857 SLETAVDIVVREWSALEDVEEQN--KLPLTGEPEL-GLIWPMYKWARGRHLQDVLSGTDL 913
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
GD R +++ IDLL Q+ K+P +D RL + +A ++ R
Sbjct: 914 AAGDFVRWVKQVIDLLDQLAKIPGLDPRLARLCAEAIKLIRR 955
>gi|392416895|ref|YP_006453500.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
gi|390616671|gb|AFM17821.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
Length = 946
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 255/517 (49%), Gaps = 77/517 (14%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P +V+++ LS
Sbjct: 112 VVVMTTEVLRNMLYADSRALQGLSYVVMDEVHFLADRMRGAVWEEVILHLPDDVRLVSLS 171
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG---KHMNRKL 118
ATV+NA+E GWI + G T ++ RPVPL + L+ L D + + R L
Sbjct: 172 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVMVGKRLMDLFDYRASGPRKGGRDL 231
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
++ L + RR + + AD G+ + ++ S+ + P
Sbjct: 232 LVDPELLRHI---------AHRREADRLADWQPR------GRGRTNRPSL-----FRTPS 271
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDECEMSEVELALKRFRIL 235
D + L+ D+LPAI FIF+R GCDAAV+ +L DE E+ +R L
Sbjct: 272 RADVISVLQQGDLLPAITFIFSRAGCDAAVKQCLRSSLRLTTDEERARIAEIVDRRTADL 331
Query: 236 Y-PDAV-------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
D V RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 332 NDADLVVLDFHQWRE----GLLRGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLAL 387
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA-- 345
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ TP++
Sbjct: 388 GINMPARTVVLERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPHDSTTD 447
Query: 346 -EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F +Y M +NL+ Q G E+AR+L
Sbjct: 448 PAEVAGLASTRTFPLRSSFAPTYNMTINLVH-----------------QMG--PEQARRL 488
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 464
+E+SF Y ++ L + + + L E++D+ R +AA + L+
Sbjct: 489 LERSFAQYQADRSVVG----LVRAVERGERLLGELADELGGR-------DAAILDYTRLR 537
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
++ +R ++ R L+R A D L G +
Sbjct: 538 AKISERERAQSRASR---LQRRQAANDALTALRRGDI 571
>gi|433455773|ref|ZP_20413843.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432197131|gb|ELK53533.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 942
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/422 (36%), Positives = 212/422 (50%), Gaps = 72/422 (17%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L ++ +V+DEVHYL+D RG VWEE+II+ P EV+++ LSATV+NA+E W+ + G
Sbjct: 138 LLELGYVVMDEVHYLADRFRGAVWEEVIIHLPSEVRLVSLSATVSNAEEFGAWLDTVRGD 197
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLL------DE------KGKHMNRKLSLN--YLQLS 126
T+++ S RPVPL + +L L DE G + +N L+L+
Sbjct: 198 TDVVVSEHRPVPLWQHVMVGPDILDLFASDIAFDEAVPALSSGTGAGSRYEVNPELLELA 257
Query: 127 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 186
SE K + R R+ S + ++ IRR+ P+VI L
Sbjct: 258 YSEQKLNRASNWGRPAGRRGKRPPSR-----------PQQPVSRIRRASRPEVIA---RL 303
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNL--------------LDEC--EMSEVELALK 230
+LPAI FIF+R GCDAAV+ D L +DE E+ E +LA+
Sbjct: 304 DKEGLLPAITFIFSRNGCDAAVRQCLDAGLWLTTEREREIIARRVDEAAREIPEEDLAVL 363
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
F + +GL++G+AAHHAG LP +K +E+LF GLV+ VFATETLA G+N
Sbjct: 364 GFWLWR---------EGLIRGIAAHHAGMLPTFKEVVEKLFADGLVRAVFATETLALGVN 414
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + +T+ E Q+ GRAGRRGID GH V++ P
Sbjct: 415 MPARTVVLEKLDKFNGESHVNITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPAAVAG 474
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F +Y M +NL+A Q GR AR+++E SF
Sbjct: 475 LASRRTYPLNSSFRPTYNMSVNLIA-----------------QFGRI--RAREILETSFA 515
Query: 411 NY 412
+
Sbjct: 516 QF 517
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 765
E+ +L+ + +L +I+ + K F R+ +++ L + + E+ +R
Sbjct: 723 ERWWKLRKETDQLMGQIQGRTNTIAKTFDRVCDLLDTYGYLQAHPDGRVTISESGNRLRR 782
Query: 766 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 817
G+ +L +A+ L+ DL A++AA +SLV + GI+ ++ PS
Sbjct: 783 IYGDRDLLVALCLQAGAFDDLDAAEVAAFVSSLVFQAKREETGIRPKM---------PSV 833
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCAL 874
++ +++ S + +E+H ++P + + G+V WA G + + L
Sbjct: 834 SLETAVDIAVREWSVLNDREEQH--KLPLSGEPEL-GLVWPMYKWAQGRSLLTALQGTEL 890
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRL 903
GD R ++ IDLL Q+ K+PD+D L
Sbjct: 891 AAGDFVRWAKQVIDLLDQLVKVPDMDPHL 919
>gi|320534071|ref|ZP_08034614.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133719|gb|EFW26124.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 986
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 208/409 (50%), Gaps = 41/409 (10%)
Query: 5 IVVFSCSVGMVSSESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V SG D+D +V+DEVHYL+D RG+VWEE+II+ P EVQ+I LS
Sbjct: 119 VVVMTTEVLRNMLYSGSRDLDRLGFVVMDEVHYLADRFRGSVWEEVIIHLPAEVQVISLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL--------------- 106
ATV+NA+E W+GQ+ G+T ++ S RPVPLT + LLPL
Sbjct: 179 ATVSNAEEFGDWLGQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPADPAEQSDQLD 238
Query: 107 ------LDEKGKHMNRK-LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV---- 155
L+++ + + L+ L+ + GG + R ++
Sbjct: 239 QSEQPELEQQAERTGQPPLNPELLKAVKQARRAAASGGGSKNGYRGRGGDSARGPQPWKR 298
Query: 156 TSFGQHQLSKNSINA-IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 214
++ G + A R + P + + L +LPAI F+F+R GC+ AV + +
Sbjct: 299 SARGGRAPRRGEGGARTARLKPPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQVVNA 358
Query: 215 --NLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKS 265
+L E E + + ++R P + + G L +GVAAHHAG LP++K
Sbjct: 359 GVDLTTEAEAARIREVIERRTADIPAG--DLGVLGFHFWAHALERGVAAHHAGLLPVFKE 416
Query: 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325
+EELF GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAG
Sbjct: 417 TVEELFSAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAG 476
Query: 326 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
RRGID GH V++ L PLVS F +Y M +NLL
Sbjct: 477 RRGIDVEGHAVVLAADDVEPATVSSLASRRTYPLVSAFRPTYNMAVNLL 525
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 24/207 (11%)
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIF 755
K R +A ++RL +RIE + + F + V+ H R L +
Sbjct: 755 KWSRARAEAERLQRRIETRTGTIARLFDAVCEVLLELGYLRPVDRGHPERELRVTGA--- 811
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI-YE 814
G+ A I E +L +A LR + DL A+LA ++ V E RL + +
Sbjct: 812 --GKVLARIYAERDLLIAECLRTGVFEDLSAAELAGALSACVYE---PRLSAQSIGLPVA 866
Query: 815 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
P + + + +L+ +E + +G V+AW G +++ L
Sbjct: 867 PGSRLGQCLRAQLGVSHRIHDLESLARIEASSGAEPALAGSVQAWCDGAQLADILDATEL 926
Query: 875 DDGDLARLLRRTIDLLAQIPKL---PD 898
GD R ++ +D++ QI L PD
Sbjct: 927 TAGDFVRWCKQLLDVVGQIASLSPPPD 953
>gi|311742488|ref|ZP_07716297.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
gi|311314116|gb|EFQ84024.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
Length = 906
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 215/444 (48%), Gaps = 72/444 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG VWEE+II P+ V I+ LS
Sbjct: 117 VVVMTTEVLRNMLYAGSRTLDGLGFVVMDEVHYLADRFRGVVWEEVIIGLPESVAIVSLS 176
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKL- 118
ATV+NA+E W+ ++ G T I RRPVPL + + PL + ++G +NR+L
Sbjct: 177 ATVSNAEEFGDWLTEVRGDTVTIVEERRPVPLHQHVLVGRQMFPLFESADEGPRVNRQLE 236
Query: 119 --SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+ QL K GG R R R +
Sbjct: 237 RFAREDWQLGRMHQGRPKKGGHRPRT------------------------------RHRT 266
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRI 234
P ++ + L + +LPAI F+F+R GC AAVQ L D L+ E E+E +
Sbjct: 267 PSRVELVEKLAAEGLLPAICFVFSRAGCSAAVQQLSDARLILTTPDERQEIEATVDAACA 326
Query: 235 LYPDA---------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
PD RE L +GVAAHHAG LP +K +E LF RGLV+VVFATETL
Sbjct: 327 HLPDEDLHVLGYHEFRE----ALGRGVAAHHAGMLPTFKECVELLFSRGLVRVVFATETL 382
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPAR+ V+ LSK +++ E Q+ GRAGRRGID GH V++
Sbjct: 383 ALGINMPARSVVIEKLSKWNGETHAEISPGEYTQLTGRAGRRGIDVEGHAVVLWQAGLDP 442
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
+ L PL S F SY M +N++ Q GRS AR+L+
Sbjct: 443 RQVAGLASTRTYPLNSSFMPSYNMAVNMVG-----------------QVGRST--ARQLL 483
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQ 429
EQSF + ++ ++ K +
Sbjct: 484 EQSFAQFQADRAVVGLARQIRKAE 507
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 721 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 780
+RIE + ++F R+ V+ L+ +T + P G+ + GE +L ++ L +
Sbjct: 707 RRIETRTNTVARQFDRVCEVLDVLGYLEGDT--VTPAGQRLQRLYGELDLVVSECLARGV 764
Query: 781 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 840
L+P+ LA+V + L R+ ++ S V + + E L+ +H
Sbjct: 765 WDGLEPSDLASVVSGLT---YTSRVVEDAPPPRFGSRRAREVADEMTELHGELAHLERQH 821
Query: 841 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
+ D F+ V W G + E++ L GD R +++ ID+LAQ+
Sbjct: 822 RLRFLRSPDFGFAEAVGRWVDGASLDEVLGLTDLAAGDFVRSMKQLIDVLAQV 874
>gi|326773350|ref|ZP_08232633.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
gi|326636580|gb|EGE37483.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
Length = 986
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 157/450 (34%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 5 IVVFSCSVGMVSSESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LS
Sbjct: 119 VVVMTTEVLRNMLYSGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+GQ+ G+T ++ S RPVPLT + LLPL + L+
Sbjct: 179 ATVSNAEEFGDWLGQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPAEAPEHSDQLD 238
Query: 122 YLQLSTSEVKPYKDG---------------------GSRRRNSRKHADMNSNNIVTSFGQ 160
+ + E + + G G +NS + S +
Sbjct: 239 QSEQTEPERQAEQTGQPPLNPELLKAVKQARRAAASGGASKNSYRGGGGGSARGTQPW-- 296
Query: 161 HQLSKNSINAIRRSQ---------VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 211
+ S A RR + P + + L +LPAI F+F+R GC+ AV +
Sbjct: 297 -KRSARGGRAPRRGEGGARTARLKPPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQV 355
Query: 212 --EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPI 262
+L E E + + ++R P V + + G L +GVAAHHAG LP+
Sbjct: 356 VSAGVDLTTEAEAARIREVIERRTADIP--VSDLGVLGFHFWAHALERGVAAHHAGLLPV 413
Query: 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 322
+K +EELF GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ G
Sbjct: 414 FKETVEELFSAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTG 473
Query: 323 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 382
RAGRRGID GH V++ L PLVS F +Y M +NLL M +
Sbjct: 474 RAGRRGIDVEGHAVVLAADDVEPATVSSLASRRTYPLVSAFRPTYNMAVNLLERMPRMRV 533
Query: 383 SNESDDMKALQAGRSLEEARKLVEQSFGNY 412
R+++EQSF +
Sbjct: 534 -------------------REVLEQSFAQF 544
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIF 755
K R K ++RL +RIE + + F + V+ H R L +
Sbjct: 755 KWSRAKTEAERLQRRIETRTGTIARLFDAVCEVLLELGYLRPVDRGHPERELRVTGA--- 811
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWK 807
G+ A I E +L +A LR + DL A+LA ++ V E G+ V
Sbjct: 812 --GKVLARIYAERDLLIAECLRTGVFEDLSAAELAGALSACVYEPRLSAQSIGLPVAPGS 869
Query: 808 NNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 867
V + I+ L+ S + G E +G V+AW G +
Sbjct: 870 RLGQCLRAQLGVSHRIHDLE----SLARIAASSGAE------PALAGAVQAWCDGAQLAD 919
Query: 868 MMMDCALDDGDLARLLRRTIDLLAQIPKL---PDVDQRLQKNAVDAS 911
++ L GD R ++ +D++ QI L PD + D S
Sbjct: 920 ILDATELTAGDFVRWCKQLLDVVGQIASLSPPPDATPEQARAVTDLS 966
>gi|38233827|ref|NP_939594.1| helicase [Corynebacterium diphtheriae NCTC 13129]
gi|38200088|emb|CAE49768.1| Putative helicase [Corynebacterium diphtheriae]
Length = 930
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 175/508 (34%), Positives = 252/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y K GG R R+ M S+N + H+LS A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ ++MLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQNMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ TP
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D + + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+ V + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 SGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|405979745|ref|ZP_11038086.1| hypothetical protein HMPREF9241_00809 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391120|gb|EJZ86184.1| hypothetical protein HMPREF9241_00809 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 922
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 203/385 (52%), Gaps = 46/385 (11%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
IVV + V M+ + + L D+D +VLDEVHYL+D RG VWEE+II+ P E +I+ LSA
Sbjct: 139 IVVMTTEVLRNMIYAGADLSDLDSVVLDEVHYLADRFRGPVWEEVIIHLPAEQKIVALSA 198
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TV+NA+E WIG + G ++ S RPVPL + G+H+ S
Sbjct: 199 TVSNAEEFGTWIGHVRGGCRVVVSEHRPVPLYQHMLV-----------GRHLYDLYS--- 244
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQVI 180
P K G S R N + + + I G+ + + +R R P
Sbjct: 245 ---------PSKKGESTRINPELRSAIGPS-IPGRTGRGGRNWHETARVRPPRESRP--- 291
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFR----- 233
TL L +LP I F+F+R GC+ AV + L ++ E ++ A+ +
Sbjct: 292 STLIELDRAGLLPTITFVFSRAGCEDAVTQVVHAGIWLTNKEEQKQIATAVDEVKTQVGA 351
Query: 234 ----ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
+L +A E L +G+AAHHAG LPI K +E LF RGL+K+V+ATETLA GI
Sbjct: 352 QDCHVLGINAWGE----ALERGIAAHHAGLLPIQKETVENLFTRGLIKMVYATETLALGI 407
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR+ V+ SL K + +QLT E Q++GRAGRRGID GH +++ EE
Sbjct: 408 NMPARSVVIESLRKWNGAAHVQLTPGEYTQLSGRAGRRGIDTEGHAIVLHRGQVAPEEVN 467
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLL 374
L PL+S FT +Y MV+NLL
Sbjct: 468 ALASKRTYPLISAFTPTYNMVVNLL 492
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 17/203 (8%)
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
R+ + + +RI+ S +F R+ V+ E LD +T + GE I GE ++
Sbjct: 714 RINRELRTVNERIDSRTHSVAHKFDRVCQVLEELGFLDGDT--VTDQGERLRHIFGERDI 771
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD--- 827
+ LR+ L A+LAA+ ++ V E + ++ + P N+ L
Sbjct: 772 IVMECLRSGAWSGLDDAELAAIVSTCVFESRR----EDGARPALPVGLSKNLTRALKATL 827
Query: 828 EHRSSFLELQEKHGVEIPCCLDSQFSGMVE---AWASGLTWREMMMDCALDDGDLARLLR 884
+ + +++++ G+E D SGM+E AWA G + + + GD R +R
Sbjct: 828 QASAKVADVEKRAGLEPTTEPD---SGMMEACLAWAHGASLGTSLDGEEMLGGDFVRWIR 884
Query: 885 RTIDLLAQIPKLPDVDQRLQKNA 907
+ +DLL Q+ D D+ + A
Sbjct: 885 QVMDLLDQLRH--DTDEAMASQA 905
>gi|451944190|ref|YP_007464826.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451903577|gb|AGF72464.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 925
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 219/458 (47%), Gaps = 61/458 (13%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ESG L + +V+DE+HYL+D SRG VWEE+I+ + V II LS
Sbjct: 103 IVVMTTEVLRNMIYAESGALRRLSHVVMDEIHYLADRSRGAVWEEVILNLDESVNIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSL 120
ATV+N++E W+ + G T++I S RPVPL + PL + G +NR+L
Sbjct: 163 ATVSNSEEFGNWLSTVRGDTKVIVSEHRPVPLEQWMMVGRKTYPLFEPGSGGEVNRELER 222
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+L +E + R R A + + +H R P+VI
Sbjct: 223 RIERLQAAEAAEGRADYESGRGFRARAAGRRSGVKRPEDRH----------RPVGRPEVI 272
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECE---------------MSE 224
L L +MLPAI FIF+R GCD A+ Q L +L E + E
Sbjct: 273 TALQGL---NMLPAITFIFSRAGCDGALMQCLRSRLVLTSQEEADEIGRIIDAGVEGIPE 329
Query: 225 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+L + RFR L +G AAHHAG LP ++ +EELF RGL++ VFATET
Sbjct: 330 EDLEVLRFRQWR---------AALTRGFAAHHAGMLPAFRHIVEELFVRGLLRAVFATET 380
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID G+ V+ P
Sbjct: 381 LALGINMPARTVVLEKLVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVIGNAVVQWAPAMD 440
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
L PL+S F+ Y M +NLL EEA +L
Sbjct: 441 PRAVAGLASTRTYPLISTFSPGYNMAVNLLGLL-------------------GFEEALRL 481
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 442
+E+SF Y ++ E+ + ++ L +++ D
Sbjct: 482 LEKSFAQYQADGSVVGEVREIERAERRVQELRTQLEHD 519
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 34/245 (13%)
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 735
R ++AR+ +K+AR E ++ K+ +TV+ + + R R L ++ +E G
Sbjct: 695 REQLARVGEKLARRE--RDLAKLENTVERATDTLGRTFERLIDLLAEMDYVEFEG----- 747
Query: 736 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 795
+ R T V+ GE A I E++L +A L+ I +L PA+LA V +
Sbjct: 748 -----VGAER-----TPVVTEEGERLAQIHNESDLLVAQCLKRGIWNELDPAELAGVVSM 797
Query: 796 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQF 852
E K ++ EP + ++ + EL +++H + + ++ F
Sbjct: 798 CTFENRK-------ATHGEPDAATDRMAEAMNATARIWSELSADEQRHRLPVTREPEAGF 850
Query: 853 SGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPK--LPDVDQRLQK 905
+ V WA+G M A L GD R R+ IDLL Q+ K D +R +
Sbjct: 851 ALAVHQWAAGAPLGYCMAAAAESGAELTPGDFVRWCRQVIDLLEQVGKTGYEDGIRRSAR 910
Query: 906 NAVDA 910
A+DA
Sbjct: 911 QAIDA 915
>gi|227503643|ref|ZP_03933692.1| helicase [Corynebacterium accolens ATCC 49725]
gi|227075679|gb|EEI13642.1| helicase [Corynebacterium accolens ATCC 49725]
Length = 938
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 160/468 (34%), Positives = 226/468 (48%), Gaps = 63/468 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+L+D SRG VWEE+I+ V II LS
Sbjct: 103 IVVMTTEVLRNMIYADSPALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSL 120
ATV+N++E W+ + G T +I + RPVPL + + PL + E G +N +L
Sbjct: 163 ATVSNSEEFGEWLATVRGDTSVIVTEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELER 222
Query: 121 NYLQLSTSEV----KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L + YK G R +R H + G S + R
Sbjct: 223 RIQRLEAGDSDDGRADYKSGKGFRARAR-HKGGGRSEFHGKAGGRSGSSRPQDRYRPLGR 281
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE 226
P+V+ L +S+DMLPAI FIF+R GCD A+ Q L +L E +E VE
Sbjct: 282 PEVLKVL---QSQDMLPAITFIFSRAGCDGALYQCLRSRMVLTTQEEAEEIKAIVDAGVE 338
Query: 227 ---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
L +R+R + L +G AAHHAG LP ++ +E+LF RGLV+
Sbjct: 339 GIPEEDLQVLDFRRWR------------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVR 386
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+
Sbjct: 387 AVFATETLALGINMPARTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVV 446
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
P L PL+S F Y M +NLL MH
Sbjct: 447 QWAPAMDPRFVAGLASTRTYPLISTFAPGYNMAINLLG----MH---------------G 487
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
E++ +L+E+SF + ++ EL + + L ++ DDA+D
Sbjct: 488 FEDSLRLLEKSFAQFQADGSVVEETRELERAEHRVRELREQL-DDAVD 534
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 659 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
L + H A E R ++A + +K+AR E ++ +K+ V + + R R
Sbjct: 691 LRDAIREHPAHEWPATDREQLAGVAQKLARRE--RDLEKLQAKVDKATDTLGRTFERIVD 748
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L ++ +E SG A T VI GE A I E++L +A L+
Sbjct: 749 LLAEMDYVEFSG---------------AGSDRTPVITEEGERLAKIHSESDLLVAQCLKR 793
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL-- 836
I +L PA+LA V + E K ++ +P + + ++ + EL
Sbjct: 794 GIWDELDPAELAGVASLCCFENRK-------ATGGQPEAATDRMADAMNATWRIYTELGA 846
Query: 837 -QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLL 890
+ +H + ++ F+ + WA+G M L GD R R+ +DLL
Sbjct: 847 DERRHRLPPTREPEAGFALAIHQWAAGAPLGYCMAAANEAGAELTPGDFVRWCRQVVDLL 906
Query: 891 AQIPKLPDVDQRLQKNAVDASNVMDR 916
QI K D ++Q+NA A + + R
Sbjct: 907 QQIAKT-GYDGQIQRNARRAMDAIQR 931
>gi|108799443|ref|YP_639640.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119868556|ref|YP_938508.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108769862|gb|ABG08584.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119694645|gb|ABL91718.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 918
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 174/511 (34%), Positives = 250/511 (48%), Gaps = 65/511 (12%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 106 IVVMTTEVLRNMLYADSPALHGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + R S
Sbjct: 166 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPAR--SGR 223
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L + ++ + RR + + AD G+ + + S I R P D
Sbjct: 224 ELVVDPELLRHI----AHRREADRLADWQPR------GRGRSAHRSRPTIYRP--PARPD 271
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECE----MSEV------ELALK 230
+ L +LPAI F+F+R GCDAAV Q L L E ++EV +LA
Sbjct: 272 VIAALDREGLLPAITFVFSRAGCDAAVKQCLRSPLRLTTNEERQRIAEVIDRRCADLAEA 331
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+L RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GIN
Sbjct: 332 DLIVLDYHEWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGIN 387
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 388 MPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPDVEPVEVAG 447
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F SY M +NL+ Q G + +AR+L+EQSF
Sbjct: 448 LASTRTFPLRSSFAPSYNMTINLVH-----------------QMGPA--QARQLLEQSFA 488
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
Y ++ + + + ++ D + +E+ +A + L+ ++
Sbjct: 489 QYQADRSVVGLRRGVERGERMLDEIAAELGG-----------RDAPILDYVRLRAKISER 537
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHL 501
+R ++ R L+R +A D L G +
Sbjct: 538 ERAQS---RSSRLQRRAAANDALSALRRGDI 565
>gi|126435097|ref|YP_001070788.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126234897|gb|ABN98297.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 918
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 229/450 (50%), Gaps = 51/450 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 106 IVVMTTEVLRNMLYADSPALHGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + R S
Sbjct: 166 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPAR--SGR 223
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L + ++ + RR + + AD G+ + + S I R P D
Sbjct: 224 ELVVDPELLRHI----AHRREADRLADWQPR------GRGRSAHRSRPTIYRP--PARPD 271
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECE----MSEV------ELALK 230
+ L +LPAI F+F+R GCDAAV Q L L E ++EV +LA
Sbjct: 272 VIAALDREGLLPAITFVFSRAGCDAAVKQCLRSPLRLTTNEERQRIAEVIDRRCADLAEA 331
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+L RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GIN
Sbjct: 332 DLIVLDYHEWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGIN 387
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 388 MPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPDVEPVEVAG 447
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F SY M +NL+ Q G + +AR+L+EQSF
Sbjct: 448 LASTRTFPLRSSFAPSYNMTINLVH-----------------QMGPA--QARQLLEQSFA 488
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEIS 440
Y ++ + + + ++ D + +E+
Sbjct: 489 QYQADRSVVGLRRGVERGERMLDEIAAELG 518
>gi|326329698|ref|ZP_08196019.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325952463|gb|EGD44482.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 926
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 207/418 (49%), Gaps = 38/418 (9%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYL+D SRG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G+
Sbjct: 137 LMGLGFVVMDEVHYLADRSRGAVWEEVIIHLPESVSVVSLSATVSNAEEFGEWLTTVRGE 196
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGS 138
T I +RPVPL + ++ L ++ +K +D
Sbjct: 197 TTTIIEEKRPVPLYQHVMAGRRIMDLFASSDVDAAAGFVKEGAPVNGELMKLARDDWAAG 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R + R D N G ++ RR +P ++ + L+ ++LPAI F+
Sbjct: 257 RMTDRRTPKDRRKGN-----GNRRVGNG-----RRVWIPSRVEVINALQRDNLLPAINFV 306
Query: 199 FNRRGCDAAVQYLEDCNL--LDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKG 251
F+R GCDAAVQ NL E E+ ++ PD R + GL +G
Sbjct: 307 FSRVGCDAAVQQCIQANLRLTTPDERDEIFAYVEEACADLPDEDRHVLGYHDWVDGLTRG 366
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
VAAHHAG LP +K +EELF RGLVK VFATETLA GINMPART V+ LSK +
Sbjct: 367 VAAHHAGLLPAFKQVVEELFLRGLVKAVFATETLALGINMPARTVVIEKLSKWNGEAHVN 426
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
L+ E Q+ GRAGRRG+D GH V++ E L PL S F SY M +
Sbjct: 427 LSPGEYTQLVGRAGRRGLDVEGHGVVLWQQGLNPRELAGLASTRTYPLRSSFRPSYNMAV 486
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
NL+ Q GR+ +R+L+EQSF + ++ ++ K +
Sbjct: 487 NLVH-----------------QFGRA--RSRELLEQSFAQFQADKAVVGLARQVRKAE 525
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 7/188 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ +L + L +R+E + + F R+ +V+ ALD + + + G +
Sbjct: 713 ERWFKLSRDTDTLRRRVEARTNTVARTFDRVCDVLV---ALDYLEGETVTERGTHLMRLY 769
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
E +L A LR + DL P++LAA + LV E R + + P V +VI
Sbjct: 770 SEMDLVAAEALREGLWDDLTPSELAAALSVLVYEA---RRADDATPPRLPGGRVKDVIAE 826
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
L+ H ++ D F+ WA G +++ + L GD R +++
Sbjct: 827 TVRLWGHLDALERDHKLDFLRQPDLGFAWAAYRWAEGDELDDVLSEVELAAGDFVRWVKQ 886
Query: 886 TIDLLAQI 893
IDL Q+
Sbjct: 887 LIDLCGQV 894
>gi|452912070|ref|ZP_21960727.1| putative helicase [Kocuria palustris PEL]
gi|452832771|gb|EME35595.1| putative helicase [Kocuria palustris PEL]
Length = 957
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 211/413 (51%), Gaps = 54/413 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L ++ +V+DEVHYL+D RG VWEE+II+ P VQ+ CLS
Sbjct: 111 VVVMTTEVLRNMLYADSPTLSNLGFVVMDEVHYLADRFRGAVWEEVIIHLPPHVQMACLS 170
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--------DEKGKH 113
ATV+NA+E W+G + G+T+++ S RPVPL + T L+ L EK +
Sbjct: 171 ATVSNAEEFGDWLGTVRGETDVVVSEHRPVPLWQHMQVGTELMDLFVTDTVEQAAEKAER 230
Query: 114 MNR---------------KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 158
+ R L +L S + + G SR R +K+ +
Sbjct: 231 LERAREAGLEARIEPPAVNPELLHLARSQASGRRGPGGRSRERMRQKNGRGRGGHGRDDR 290
Query: 159 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNL 216
G+ + +I R P + L L+S +LPAI FIF+R GCD AV D L
Sbjct: 291 GRGSGRDDRGGSIPRISRPHL---LRQLQSEGLLPAITFIFSRAGCDDAVTQCLAADLQL 347
Query: 217 LDECE--------------MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262
E E +++V+L + FR GLL GVAAHHAG LP+
Sbjct: 348 TTEAERRTIRAVTAEAAASLNDVDLDVLGFRQWR---------DGLLHGVAAHHAGLLPL 398
Query: 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 322
+K +EELF +GL+K VFATETLA GINMPAR+ VL L K R+ +T E Q+ G
Sbjct: 399 FKEVVEELFTQGLIKAVFATETLALGINMPARSVVLERLDKFNGEARVDITPGEYTQLTG 458
Query: 323 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
RAGRRGID GH V++ P + L PL S F +Y M +NL+A
Sbjct: 459 RAGRRGIDVEGHAVVLWRPGSDPQAVAGLASKRTYPLNSSFRPTYNMSVNLIA 511
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 17/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ--VIFPLGETAAAI 764
E+ +RL+ + RL ++++ + F RI++V+HE L+ + P G++ I
Sbjct: 736 ERWERLRRETDRLMRQLDGRTNAVAARFDRITSVLHELDYLERRDDELRLTPAGQSLRRI 795
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTT 818
G+ +L LAM LR+ IL L PA +AAV + G + RL PS
Sbjct: 796 YGDRDLLLAMGLRDGILDGLDPASIAAVATVFTYQAKRQDAGARPRL---------PSAK 846
Query: 819 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + H + +L+E+H V+ + G + WA G + R + D L GD
Sbjct: 847 IEQAVATAVTHWTRLTDLEEQHRVDQTAEPELGMVGPMHRWARGGSLRATLEDTELAAGD 906
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ IDLL Q+ + +D + + A +++ R
Sbjct: 907 FVRWTKQVIDLLDQVASIRGLDAQTRTGCQRAVDLIRR 944
>gi|379754426|ref|YP_005343098.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-02]
gi|378804642|gb|AFC48777.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-02]
Length = 926
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 175/524 (33%), Positives = 253/524 (48%), Gaps = 81/524 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKH 113
ATV+NA+E GWI + G T ++ RPVPL + L L D + G
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAP 223
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
+++ + L+ T RR + + +D S G+ +L S R
Sbjct: 224 REPRVNPDLLRHITH-----------RREADRMSDWQPRR---SAGRGRLPARS-GRPRL 268
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV--- 225
+ P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 269 YRTPARPDVIASLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEH 328
Query: 226 ---ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFAT
Sbjct: 329 RCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFAT 384
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 385 ETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPT 444
Query: 343 EGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 445 EETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG-- 483
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY 457
E+A +L+EQSF Y ++ L + + D + EI+ + K A
Sbjct: 484 PEQAHRLLEQSFAQYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------API 532
Query: 458 KEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
E A ++ + +R ++ R L+R A D L G +
Sbjct: 533 LEYARMRARISEMERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|283783257|ref|YP_003374011.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
gi|283441854|gb|ADB14320.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
Length = 877
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 248/521 (47%), Gaps = 98/521 (18%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G+T LI
Sbjct: 169 VVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNVEDFSAWLESVRGETHLIVD 228
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKG-----KHMNRKLS--LNYLQLSTSEVK-P 132
RPVPL + +T+ LL L D K +N L+ LN + K
Sbjct: 229 EHRPVPLERHVVVQEDSATEPELLDLYDHDNNGNVTKRVNPALTRKLNEFEYRARRRKES 288
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
Y D R R +KH + G QL K + + P+ VID L +L
Sbjct: 289 YSDSKYRYRKGKKHR--------VNGGVAQLDKCA-----KRHTPRRWAVIDELDYL--- 332
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ DE EM E+ L+
Sbjct: 333 GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRKIVDSMVANQLSKEDLHALS 391
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 392 FERFRF------------ALEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 439
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ G+ +LV ++
Sbjct: 440 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGYAILVDHADFVPQQA 499
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L V PL S F ++ M +NLL N SD + AR +++S
Sbjct: 500 AALSSKRVYPLHSSFVPTFNMAVNLL---------NSSD----------ADTARTTLDRS 540
Query: 409 FGNY---VGSNVMLAAKDEL-CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 464
F + + + +EL ++ + E D A + R L EA + + L+
Sbjct: 541 FAQWEANASAERLHNRMNELETALKGYEEAFHCEHGDFAEFLQLRMKLKEAQHDQRRKLK 600
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC 505
L FRT+ R F AL D++ + C
Sbjct: 601 HTL-----FRTDAERTAA---FKALDDVIANLREAERTHPC 633
>gi|298252807|ref|ZP_06976601.1| superfamily II RNA helicase [Gardnerella vaginalis 5-1]
gi|297533171|gb|EFH72055.1| superfamily II RNA helicase [Gardnerella vaginalis 5-1]
Length = 877
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 248/521 (47%), Gaps = 98/521 (18%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G+T LI
Sbjct: 169 VVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNVEDFSAWLESVRGETHLIVD 228
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKG-----KHMNRKLS--LNYLQLSTSEVK-P 132
RPVPL + +T+ LL L D K +N L+ LN + K
Sbjct: 229 EHRPVPLERHVVVQEDSATEPELLDLYDHDNNGNVTKRVNPALTRKLNEFEYRARRRKES 288
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
Y D R R +KH + G QL K + + P+ VID L +L
Sbjct: 289 YSDSKYRYRKGKKHR--------VNGGVAQLDKCA-----KRHTPRRWAVIDELDYL--- 332
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ DE EM E+ L+
Sbjct: 333 GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRKIVDSMVANQLSKEDLHALS 391
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 392 FERFRF------------ALEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 439
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ G+ +LV ++
Sbjct: 440 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGYAILVDHADFVPQQA 499
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L V PL S F ++ M +NLL N SD + AR +++S
Sbjct: 500 AALSSKRVYPLHSSFVPTFNMAVNLL---------NSSD----------ADTARTTLDRS 540
Query: 409 FGNY---VGSNVMLAAKDEL-CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 464
F + + + +EL ++ + E D A + R L EA + + L+
Sbjct: 541 FAQWEANASAERLHNRMNELETALKGYEEAFHCEHGDFAEFLQLRMKLKEAQHDQRRKLK 600
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC 505
L FRT+ R F AL D++ + C
Sbjct: 601 HTL-----FRTDAERTAA---FKALDDVIANLREAERTHPC 633
>gi|297243516|ref|ZP_06927448.1| superfamily II RNA helicase [Gardnerella vaginalis AMD]
gi|296888561|gb|EFH27301.1| superfamily II RNA helicase [Gardnerella vaginalis AMD]
Length = 877
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 203/386 (52%), Gaps = 67/386 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G+T L+
Sbjct: 169 VVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNVEDFSAWLESVRGETHLVVD 228
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKG-----KHMNRKLS--LNYLQLSTSEVK-P 132
RPVPL + +T+ LL L D K +N L+ LN + K
Sbjct: 229 EHRPVPLERHVVIQEDSATEPELLDLYDHDNNGNVTKRVNPALTRKLNEFEYRARRRKES 288
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
Y D R R +KH+ + G QL K + + P+ VID L +L
Sbjct: 289 YSDSKYRYRKGKKHS--------ANGGVAQLDKCA-----KRHTPRRWAVIDELDYL--- 332
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ DE EM E+ L+
Sbjct: 333 GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRKIVDSMVANQLSKEDLHALS 391
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 392 FERFRF------------ALEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 439
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ G+ +LV ++
Sbjct: 440 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGYAILVDHADFVPQQA 499
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
L V PL S F ++ M +NLL
Sbjct: 500 AALSSKRVYPLHSSFVPTFNMAVNLL 525
>gi|420154156|ref|ZP_14661079.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
gi|394755492|gb|EJF38710.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
Length = 982
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 217/454 (47%), Gaps = 81/454 (17%)
Query: 19 SGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 75
SG D+D +V+DEVHYL+D RG VWEE+II+ EVQ++ LSATV+NA+E W+G
Sbjct: 133 SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLAPEVQVVSLSATVSNAEEFGDWLG 192
Query: 76 QIHGKTELITSSRRPVPLTWYFSTKTALLPL---------------LDEKGK--HMNRKL 118
Q+ G+T ++ S RPVPLT + LL L + + G+ +L
Sbjct: 193 QVRGRTAVVVSEHRPVPLTQHMMVGRRLLRLHTVPSSSPSPTAVSGVSDSGETSETAAEL 252
Query: 119 SLN----------------YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 162
LN S S P + R R H+D + +
Sbjct: 253 PLNPDLLKALARARRAAAGEAGASKSGRGPVGSRARQWRRGRSHSD---------YPAYP 303
Query: 163 LSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLD 218
+ R R + P + + L D+LPAI F+F+R GC AV D +L
Sbjct: 304 ARRRGDGGARMARLRPPSRVTVITALEQADLLPAIVFVFSRAGCQQAVDQAVDAGIDLTT 363
Query: 219 ECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELF 271
E E + + ++R P R+ + G L +GVAAHHAG LP++K +EELF
Sbjct: 364 ESEAARIREVIERHTAEIP--TRDLGVLGFRNWAHALERGVAAHHAGLLPVFKETVEELF 421
Query: 272 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331
GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID
Sbjct: 422 SAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDI 481
Query: 332 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
GH V++ L PLVS F +Y M +NLL
Sbjct: 482 EGHAVVLAADDIEPAFVSSLASRRTYPLVSAFRPTYNMAVNLL----------------- 524
Query: 392 LQAGR-SLEEARKLVEQSFGNYVG--SNVMLAAK 422
GR S AR+++E SF Y S V LAA+
Sbjct: 525 ---GRTSRARAREVLESSFAQYQADRSVVELAAQ 555
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI-YEPS 816
G A I E +L ++ LR+ + L PA LAA ++ V E RL + + P
Sbjct: 808 GRVLARIYAERDLLISECLRHGLWQGLDPADLAAAVSACVYE---PRLATQSLGLPIAPG 864
Query: 817 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
+ + V+ S +L+ +E + +G V AWA G E++ C L
Sbjct: 865 SRLGAVLREEIRLSRSINDLETLARIEFSSGAEPALAGAVRAWAEGADLAEVLEACELTA 924
Query: 877 GDLARLLRRTIDLLAQI 893
GD R ++ +D+L Q+
Sbjct: 925 GDFVRCSKQLLDVLRQL 941
>gi|255325684|ref|ZP_05366781.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
gi|255297294|gb|EET76614.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
Length = 938
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 226/467 (48%), Gaps = 63/467 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DE+H+L+D SRG VWEE+I+ V II LS
Sbjct: 103 IVVMTTEVLRNMIYAESAALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSL 120
ATV+N++E W+ + G T +I S RPVPL + + PL + E G +N +L
Sbjct: 163 ATVSNSEEFGDWLSTVRGDTTVIVSEHRPVPLDQWMMLGRKIYPLFEPESGGQVNAELER 222
Query: 121 NYLQLSTSEV----KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L + YK G R +R S G+ ++ + R
Sbjct: 223 RIQRLEAGDTDDGRADYKSGKGFRARARHKGGGRSEFHGKGRGRSGAARQQ-DRYRPLGR 281
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE 226
P+V+ L +S+DMLPAI FIF+R GCD A+ Q L +L E ++ VE
Sbjct: 282 PEVLKVL---QSQDMLPAITFIFSRAGCDGALYQCLRSRMVLTSQEEAQQIKDIVDAGVE 338
Query: 227 ---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
L KR+R + L +G AAHHAG LP ++ +E+LF RGLV+
Sbjct: 339 GIPEEDLQVLDFKRWR------------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVR 386
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+
Sbjct: 387 AVFATETLALGINMPARTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVV 446
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
P + L PL+S F Y M +NLL
Sbjct: 447 QWAPAMDPRQVAGLASTRTYPLISTFAPGYNMAINLLGML-------------------G 487
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAI 444
EE+ +L+E+SF + ++ E+ + + L +++ DDA+
Sbjct: 488 FEESLRLLEKSFAQFQADGSVVEETREIERAEHRVRELRNQL-DDAV 533
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDIN------TQVIFPLGET 760
+K+ R + +L ++ + + + F RI +++ E ++ T VI GE
Sbjct: 716 QKLARRERDRDKLQSKVNKATDTLGRTFERIVDLLAEMDYVEFTGVGADRTPVITEEGER 775
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATSGQPEAATE 828
Query: 821 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 872
+ + ++ + EL +++H + ++ F+ V WA+G M
Sbjct: 829 RMADAMNATWRVYTELTADEQRHRLPPTREPEAGFALAVHQWAAGAPLGYCMAAANEAGA 888
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ IDLL Q+ K D +Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVIDLLQQVAKT-GYDGEIQRNARRAIDAIQR 931
>gi|296139877|ref|YP_003647120.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296028011|gb|ADG78781.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 917
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 251/517 (48%), Gaps = 74/517 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S D + +V+DEVHYL+D RG VWEE+I++ P +V+++ LS
Sbjct: 103 VVVMTTEVLRNMLYADSPTLDGLSHVVMDEVHYLADRFRGAVWEEVILHLPADVRLVSLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS-L 120
ATV+NA+E WI ++ G T +I +RPVPL + L L D + +++
Sbjct: 163 ATVSNAEEFGAWITEVRGDTTVIVDEKRPVPLWQHMLVGRRLFDLFDTRALRASQESGGK 222
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQV 179
N L L + V+ K R+ D + + + S + + A RR P+V
Sbjct: 223 NALVLDAALVRYVK--------QRESLDRSRDPGIVSPTGRRAGRGRPQATRRPIPRPEV 274
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV--------------QYLEDCNLLDE--CEMS 223
I L + +LPAI F+F+R GC+ A+ Q E ++D+ E S
Sbjct: 275 IALL---DAEGLLPAITFVFSRAGCEQALTQCLRSPVVLTTQDQAAEIGAIIDKHVAEFS 331
Query: 224 EVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+L L F E L +G AAHHAG LP ++ +EELF +GLV+ VFATE
Sbjct: 332 PADLELLGF---------EEWRAALTRGFAAHHAGMLPAFRHAVEELFVKGLVRAVFATE 382
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPY 342
TLA GINMPART VL L K +LT E Q+ GRAGRRGID GH VVL QT
Sbjct: 383 TLALGINMPARTVVLERLVKFNGETHNELTPGEYTQLTGRAGRRGIDVEGHAVVLWQTGV 442
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 402
+E L A PLVS FT Y M +NL+ + GR+ A
Sbjct: 443 R-PQEVAGLAGARTFPLVSSFTPGYNMSINLVD-----------------RLGRA--GAE 482
Query: 403 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 462
+L+E SF + ++ + + +KE D L ++I+D A A Y E
Sbjct: 483 RLLEASFAQFQADRSVVGLAKRVQRGEKELDQLRAQITDAA---------GGADYLEYVR 533
Query: 463 LQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 499
L+E +++ +R LRR+ R L + G
Sbjct: 534 LREAVRSRER---SLRRQHLSDRRDGAATALGELRRG 567
>gi|376293256|ref|YP_005164930.1| putative helicase [Corynebacterium diphtheriae HC02]
gi|372110579|gb|AEX76639.1| putative helicase [Corynebacterium diphtheriae HC02]
Length = 930
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 252/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ +L+ +T++ Y + GG R R+ M S+N + H+ S A+
Sbjct: 227 EHIEHLEGTTTDGTEYGRAQLQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D ++ + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+ V + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 SGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|415709926|ref|ZP_11463505.1| helicase [Gardnerella vaginalis 6420B]
gi|388055928|gb|EIK78813.1| helicase [Gardnerella vaginalis 6420B]
Length = 877
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 203/386 (52%), Gaps = 67/386 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G+T L+
Sbjct: 169 VVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNVEDFSAWLESVRGETHLVVD 228
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKG-----KHMNRKLS--LNYLQLSTSEVK-P 132
RPVPL + +T+ LL L D K +N L+ LN + K
Sbjct: 229 EHRPVPLERHVVIQEDSATEPELLDLYDHDNNGNVTKRVNPALTRKLNEFEYRARRRKES 288
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
Y D R R +KH+ + G QL K + + P+ VID L +L
Sbjct: 289 YSDSKYRYRKGKKHS--------INGGVAQLDKCA-----KRHTPRRWAVIDELDYL--- 332
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ DE EM E+ L+
Sbjct: 333 GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRKIVDSMVANQLSKEDLHALS 391
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 392 FERFRF------------ALEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 439
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ G+ +LV ++
Sbjct: 440 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGYAILVDHADFVPQQA 499
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
L V PL S F ++ M +NLL
Sbjct: 500 AALSSKRVYPLHSSFVPTFNMAVNLL 525
>gi|227549294|ref|ZP_03979343.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078613|gb|EEI16576.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 922
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 227/460 (49%), Gaps = 65/460 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES D + +V+DE+H+L+D RG VWEE+I+ V +I LS
Sbjct: 107 VVVMTTEVLRNMIYAESPQLDRLSHVVMDEIHFLADRDRGAVWEEVILNLDDSVSVIGLS 166
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLS 119
ATV+N++E W+G + G T +I S RPVPL+ Y + PL E G +NR L
Sbjct: 167 ATVSNSEEFGEWLGTVRGDTAVIVSEHRPVPLSQYMMVGRKVFPLF-EPGTDGRVNRDLE 225
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
++ + D G RR+ + S + G+ + I+ I+ P+V
Sbjct: 226 DAIERIESGRA----DEG--RRDFEEGRGFRSR----TAGRRSGRERPIDRIKPVGRPEV 275
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
+ L + RDMLPAI FIF+R GCD A L +C S EL + +
Sbjct: 276 VSAL---QGRDMLPAIVFIFSRAGCDGA---------LFQCLRSRKELTTPEEQQRIAEI 323
Query: 240 VREPAIKGL-----------------LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
V + I+G+ ++G A+HHAG LP +K +EELF +GLV VVFAT
Sbjct: 324 V-DKGIEGIPDEDLQVLNYRQLRTAWMRGFASHHAGLLPAFKHIVEELFVQGLVCVVFAT 382
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + LT + Q+ GRAGRRGID+ G+ V+ P
Sbjct: 383 ETLALGINMPARTVVLEKLVKFNGEAHVDLTPGQYTQLTGRAGRRGIDHIGNAVVQWAPA 442
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 402
+E L PL+S FT Y M +N+L M A +
Sbjct: 443 MDPKEVAGLASTRTYPLISPFTPGYNMAINML-------------KMNGFDA------SI 483
Query: 403 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 442
+LVEQSF + ++ E+ +++ + D L ++ D
Sbjct: 484 RLVEQSFAQFQTDRSVVGEVREIERLRAKVDSLRGQLERD 523
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 15/214 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI--NTQVIFPLGETAAAI 764
E++ R + R ++L + ++ S + F RI ++ E ++I + GE A+I
Sbjct: 704 EELVREQRRLQKLQRTVDSSTDSLGRTFERIIGLLTEMDYVEIVDGEPKVTEEGERLASI 763
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
+L +A L+ + L PA+LA V + V E K + S P+ + +N
Sbjct: 764 HSVADLLVAQCLKRGVWDFLDPAELAGVASMCVFENRKATM----GSAEVPTENMAAAMN 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDL 879
+ + +++H + + D+ FS V W +G + A L GD
Sbjct: 820 STMRIYNELVADEQRHQLPVSRMPDASFSLSVHQWTAGAPLGYCLAAAAESGAELTPGDF 879
Query: 880 ARLLRRTIDLLAQIPKL---PDVDQRLQKNAVDA 910
R R+ IDLL Q+ K P++ K A+DA
Sbjct: 880 VRWCRQAIDLLEQVAKTGYNPEIRHAANK-AIDA 912
>gi|269126555|ref|YP_003299925.1| DSH domain-containing protein [Thermomonospora curvata DSM 43183]
gi|268311513|gb|ACY97887.1| DSH domain protein [Thermomonospora curvata DSM 43183]
Length = 916
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 207/423 (48%), Gaps = 60/423 (14%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + + L + +V+DEVHYL+D RG VWEE+II+ P V+I+ LS
Sbjct: 123 IVVMTTEVLRNMLYAGSPTLAGLAFVVMDEVHYLADRFRGAVWEEVIIHVPDSVRIVALS 182
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-KLSL 120
ATV+NA+E W+ ++ G+T +I RPVPL + L L + G +R K++
Sbjct: 183 ATVSNAEEFGEWLQEVRGETAVIVDEHRPVPLFQHMLVGNRLYDLFVDTGDGQDRPKINP 242
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
++ E++ K S RR RK S +V Q +
Sbjct: 243 QLRNIAVEEIRRAKIN-SGRRTGRKRIARPPRFRPPSR---------------PEVIQRL 286
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-----------EDCNLLDECEMSEVELAL 229
D +LPAI FIF+R GCDAAV E + E+ +LA
Sbjct: 287 DRA------GLLPAITFIFSRAGCDAAVAQCLHAGLRLTSRQEAEEIRAHVELRTADLAD 340
Query: 230 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
+ R+L D ++GL++G+AAHHAG LP +K +EELF RGL+K VFATETLA GI
Sbjct: 341 EDLRVLGYDQW----LEGLMRGIAAHHAGMLPTFKEIVEELFVRGLIKAVFATETLALGI 396
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART V+ L K LT E Q+ GRAGRRGID GH V++ +P
Sbjct: 397 NMPARTVVIEKLDKWNGETHADLTPGEYTQLTGRAGRRGIDVEGHAVVIWSPGMDPFAVA 456
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL+ GR E AR L+E+SF
Sbjct: 457 GLAGTRTYPLNSSFRPSYNMAVNLVGA-----------------VGR--ERARNLLEESF 497
Query: 410 GNY 412
+
Sbjct: 498 AQF 500
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 11/241 (4%)
Query: 678 KVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 735
+++RL+++I R G E + D ++ E + RLK + L +R+E + F
Sbjct: 676 EISRLRREIRRHPCHGCDERE---DHARWAE-RYFRLKRDTDALRRRVEGRSQVIARTFD 731
Query: 736 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 795
R+ V+ + L+ +T + G I E +L A LR + +L+PA+LAA ++
Sbjct: 732 RVCAVLEQLGYLEGDT--VTEEGRRLGRIYNELDLLTAESLRAGLWEELEPAELAACVSA 789
Query: 796 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 855
LV E R + ++ P + + ++ + V D F+
Sbjct: 790 LVYES---RQPDDAATPRTPPGAAQEALAAMMRLWGELEAIERDNRVSFLREPDLGFAWT 846
Query: 856 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 915
WASG + E++++ + GD R +++ IDLL Q+ R+++ A A + +
Sbjct: 847 AYRWASGHSLDEVLLESQMTAGDFVRAVKQLIDLLGQVADAAPEGSRVRQTAGKAMDGLR 906
Query: 916 R 916
R
Sbjct: 907 R 907
>gi|260903687|ref|ZP_05912009.1| DEAD/DEAH box helicase domain protein [Brevibacterium linens BL2]
Length = 907
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 232/489 (47%), Gaps = 86/489 (17%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 78
+GL D+ +VLDEVHYL+D RG VWEE+II+ P VQ++ LSATV+N +E W+ ++
Sbjct: 151 AGLSDLGFVVLDEVHYLADRFRGPVWEEVIIHLPDRVQMVSLSATVSNVEEFGAWLSEVR 210
Query: 79 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--SLNYLQLSTSEVKPYKDG 136
G T ++++S RPVPL + + L H + ++ +LN+ + G
Sbjct: 211 GPTTVVSTSHRPVPLVNHVLVGHRMYDLFTH---HDSDRIDPALNHATRT--------HG 259
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G R + R + RR QV+ +L MLPAI
Sbjct: 260 GPRSKRERA---------------------TRARFRRPSRTQVVSSLAEA---GMLPAIM 295
Query: 197 FIFNRRGCDAAV-QYLE---DCNLLDE-------CEMSEVELALKRFRILYPDAVREPAI 245
FIF+R CD AV QYL D N +E E ELA + IL + RE
Sbjct: 296 FIFSRNACDEAVEQYLSSGFDLNSREEKVIVNAALEKLRDELASEDLGILGFHSFRE--- 352
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
GLL GVAAHHAG +P +K +EELF +G++KVVFATETLA GINMPART VL L K
Sbjct: 353 -GLLLGVAAHHAGMIPQFKQLVEELFSQGIIKVVFATETLALGINMPARTVVLEKLVKFN 411
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ +T E Q+ GRAGRRGID GH V++ P E L L S F
Sbjct: 412 GEAHVSITPGEYTQLTGRAGRRGIDQIGHAVVIWHPSFEVNEIAGLASNRSYALNSAFGP 471
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
+Y M NLL+ S EA K++E SF + ++ ++
Sbjct: 472 TYNMTANLLSRM-------------------SSAEAAKVLETSFAQFQADKAVVGLAKKV 512
Query: 426 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL----KAEKRFRTELRRRM 481
K + + D D + E A L++ + K E R +++ R+R
Sbjct: 513 RKNEATIAAYEKSMKCDLGD-----------FAEYARLRQAISDTEKQETRTKSKNRQRE 561
Query: 482 ELKRFSALK 490
++ +ALK
Sbjct: 562 IVESLTALK 570
>gi|213965568|ref|ZP_03393762.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951727|gb|EEB63115.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 928
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 208/423 (49%), Gaps = 46/423 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+HYL+D RG VWEE+I+ + V +I LSATV+N++E W+ + G T++I +
Sbjct: 126 VVMDEIHYLADRERGAVWEEVILNLDQSVAVIGLSATVSNSEEFGRWLSTVRGHTDVIVT 185
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR-NSRK 145
RPVPL + L PL + K +N+ L L+ Y D G+R R +K
Sbjct: 186 DLRPVPLHQHMLVGNRLYPLFEAKSDKVNQDL----LEACRRAEFGYGDAGARERYQYKK 241
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 205
H + GQ R+ + P+ D + L + +MLPAI FIF+R GC+
Sbjct: 242 HKGGGRSYSWGDKGQ-----------RKFRPPKRGDVIRMLGAMNMLPAIVFIFSRAGCE 290
Query: 206 AAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHH 256
A+ + L D E + + P + + G L++G AAHH
Sbjct: 291 GALAQVGATRAELTDRDEQERIAKIIDDGVAHIPK--EDLQVLGFLRWRRILIRGFAAHH 348
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP ++ +EELF GLVKVVFATETLA GINMPART VL L K + LT +
Sbjct: 349 AGMLPAFRHIVEELFNEGLVKVVFATETLALGINMPARTVVLEKLVKFNGEAHVDLTPGQ 408
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM GRAGRRGID G+ V+ P + L PL+S F SY M +NLL
Sbjct: 409 YTQMTGRAGRRGIDTVGNAVVQWAPAMDPKAVAGLASTRTYPLISTFAPSYNMSVNLLQT 468
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 436
E +++++E+SF + ++ EL K ++E L
Sbjct: 469 L-------------------GYEGSKRVMERSFAQFQADGDIVGVAAELSKAKQEAAALR 509
Query: 437 SEI 439
+E+
Sbjct: 510 AEL 512
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 699 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIF 755
V+T+ + +++ +A +L KR++ + + F R+ ++ + L+ I
Sbjct: 701 VETMARHADTLRQAEAHVAKLQKRVDSASDTLARTFDRMLQLLTQMDYVEWLEGAEPTIT 760
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEP 815
G A I ++L +A LR I DL PA+LA +SLV E K +
Sbjct: 761 EEGLRLAQIHNGSDLLVATCLRRGIWDDLDPAELAGAVSSLVFENRKASQGSDEVPTEPL 820
Query: 816 STTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-- 873
+ + N + +E E + ++ + + D F+ + W +G + A
Sbjct: 821 AKALGNTYRIWEE----LSEDERRYRLPVTDLPDMAFATAIHQWTAGAPLGYCLQAAAES 876
Query: 874 ---LDDGDLARLLRRTIDLLAQIPK 895
L GD R R+ IDLL QI K
Sbjct: 877 GAELTPGDFVRWCRQVIDLLQQIKK 901
>gi|425734135|ref|ZP_18852455.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425482575|gb|EKU49732.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 916
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 168/506 (33%), Positives = 242/506 (47%), Gaps = 89/506 (17%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
I+V + V + + GL D+ +VLDEVHYL+D RG VWEE+II+ P+ VQ++ LS
Sbjct: 143 IIVMTTEVLRNMLYNDPGGLDDLGFVVLDEVHYLADRFRGPVWEEVIIHLPERVQVVSLS 202
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--S 119
ATV+N +E W+ ++ G T ++++S RPVPL + + L H + ++ +
Sbjct: 203 ATVSNVEEFGAWLREVRGPTTVVSTSHRPVPLVNHALVGHRMYDLFTH---HDSERIDPA 259
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L + + + ++ G+R R RR Q+
Sbjct: 260 LAHATRTYGGPRSKRERGNRAR-----------------------------FRRPSRTQI 290
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE-VELALKRFR---- 233
+ +L MLPAI FIF+R GCD AV QY+ L+ E + V AL+R R
Sbjct: 291 VASLAEA---GMLPAIMFIFSRNGCDEAVEQYIATGADLNSREDNVIVNAALERLREELP 347
Query: 234 -----ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
IL RE GLL+GVAAHHAG +P +K +EELF G++KVVFATETLA G
Sbjct: 348 AEDLGILGYHTFRE----GLLRGVAAHHAGMIPQFKELVEELFSAGVIKVVFATETLALG 403
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + +T E Q+ GRAGRRGID GH V+V P E
Sbjct: 404 INMPARTVVLEKLVKFNGEAHVSITPGEYTQLTGRAGRRGIDRIGHAVVVWHPTMDISEI 463
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L L S F +Y M NLL+ S +A K++E S
Sbjct: 464 AGLASNRSYALGSAFGPTYNMTANLLSRM-------------------SPADAAKVLETS 504
Query: 409 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL- 467
F + ++ K++K + + DR + E A L+ E+
Sbjct: 505 FAQFQADKAVVGLAR---KVRKNEATIAAYEKSMHCDRGD--------FGEYAALRREIS 553
Query: 468 ---KAEKRFRTELRRRMELKRFSALK 490
K E R ++++++R ++ SALK
Sbjct: 554 ETEKQETRTKSKVKQREIVESLSALK 579
>gi|311739423|ref|ZP_07713258.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305239|gb|EFQ81307.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 938
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 226/467 (48%), Gaps = 63/467 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DE+H+L+D SRG VWEE+I+ V II LS
Sbjct: 103 IVVMTTEVLRNMIYAESPALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSL 120
ATV+N++E W+ + G T +I S RPVPL + + PL + E G +N +L
Sbjct: 163 ATVSNSEEFGDWLSTVRGDTTVIVSEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELER 222
Query: 121 NYLQLSTSEV----KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L + YK G R +R S G+ ++ + R
Sbjct: 223 RIQRLEAGDTDDGRADYKSGKGFRARARHKGGGRSEFHGKGKGRSGAARQQ-DRYRPLGR 281
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE 226
P+V+ L +S+DMLPAI FIF+R GCD A+ Q L +L E ++ VE
Sbjct: 282 PEVLKVL---QSQDMLPAITFIFSRAGCDGALYQCLRSRMVLTSQEEAQQIKDIVDAGVE 338
Query: 227 ---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
L KR+R + L +G AAHHAG LP ++ +E+LF RGLV+
Sbjct: 339 GIPEEDLQVLDFKRWR------------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVR 386
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+
Sbjct: 387 AVFATETLALGINMPARTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVV 446
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
P + L PL+S F Y M +NLL
Sbjct: 447 QWAPAMDPRQVAGLASTRTYPLISTFAPGYNMAINLLGML-------------------G 487
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAI 444
EE+ +L+E+SF + ++ E+ + + L +++ DDA+
Sbjct: 488 FEESLRLLEKSFAQFQADGSVVEETREIERAEHRVRELRNQL-DDAV 533
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE------TRALDINTQVIFPLGET 760
+K+ R + +L ++ + + + F RI +++ E T A T VI GE
Sbjct: 716 QKLARRERDRDKLQSKVNKATDTLGRTFERIVDLLAEMDYVEFTGAGADRTPVITEEGER 775
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATSGQPEAATE 828
Query: 821 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 872
+ + ++ + EL +++H + ++ F+ V WA+G M
Sbjct: 829 RMADAMNATWRVYTELTADEQRHRLPPTREPEAGFALAVHQWAAGAPLGYCMAAANEAGA 888
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ IDLL Q+ K D +Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVIDLLQQVAKT-GYDGEIQRNARRAIDAIQR 931
>gi|325068780|ref|ZP_08127453.1| superfamily II RNA helicase [Actinomyces oris K20]
Length = 896
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 157/444 (35%), Positives = 216/444 (48%), Gaps = 57/444 (12%)
Query: 5 IVVFSCSVGMVSSESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LS
Sbjct: 119 VVVMTTEVLRNMLYSGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL------LDEKGKHMN 115
ATV+NA+E W+GQ+ G+T ++ S RPVPLT + LLPL + E+ +
Sbjct: 179 ATVSNAEEFGDWLGQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPAEIPEQSEQTE 238
Query: 116 R-KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH--------QLSKN 166
+ +L LQ + P ++ + S N G + S
Sbjct: 239 QTELERQPLQTGQPPLNPELLKAVKQARRAAASGGASKNSYRGRGGGSARGPQPWKRSAR 298
Query: 167 SINAIRRSQ---------VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCN 215
A RR + P + + L +LPAI F+F+R GC+ AV + +
Sbjct: 299 GGRAPRRGEGGARTARLKPPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQVVSAGVD 358
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIE 268
L E E + + ++R P + + G L +GVAAHHAG LP++K +E
Sbjct: 359 LTTEAEAARIREVIERRTADIPSG--DLGVLGFHFWAHALERGVAAHHAGLLPVFKETVE 416
Query: 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328
ELF GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAGRRG
Sbjct: 417 ELFSAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRG 476
Query: 329 IDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDD 388
ID GH V++ L PLVS F +Y M +NLL M +
Sbjct: 477 IDVEGHAVVLAADDVEPATVSSLASRRTYPLVSAFRPTYNMAVNLLERMPRMRV------ 530
Query: 389 MKALQAGRSLEEARKLVEQSFGNY 412
R+++EQSF +
Sbjct: 531 -------------REVLEQSFAQF 541
>gi|254819635|ref|ZP_05224636.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
gi|379747121|ref|YP_005337942.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
gi|378799485|gb|AFC43621.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
Length = 926
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 252/524 (48%), Gaps = 81/524 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKH 113
ATV+NA+E GWI + G T ++ RPVPL + L L D + G
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAP 223
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
+++ + L+ T RR + + +D S G+ + S R
Sbjct: 224 REPRVNPDLLRHITH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRL 268
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV--- 225
+ P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 269 YRTPARPDVIASLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEH 328
Query: 226 ---ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFAT
Sbjct: 329 RCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFAT 384
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 385 ETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPT 444
Query: 343 EGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 445 EETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG-- 483
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY 457
E+A +L+EQSF Y ++ L + + D + EI+ + K A
Sbjct: 484 PEQAHRLLEQSFAQYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------API 532
Query: 458 KEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
E A ++ + +R ++ R L+R A D L G +
Sbjct: 533 LEYARMRARISEMERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|420862495|ref|ZP_15325891.1| putative helicase helY [Mycobacterium abscessus 4S-0303]
gi|420867079|ref|ZP_15330466.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RA]
gi|420872828|ref|ZP_15336206.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RB]
gi|421039459|ref|ZP_15502469.1| putative helicase helY [Mycobacterium abscessus 4S-0116-R]
gi|421043185|ref|ZP_15506186.1| putative helicase helY [Mycobacterium abscessus 4S-0116-S]
gi|392073470|gb|EIT99309.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RB]
gi|392075410|gb|EIU01244.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RA]
gi|392077656|gb|EIU03487.1| putative helicase helY [Mycobacterium abscessus 4S-0303]
gi|392225568|gb|EIV51085.1| putative helicase helY [Mycobacterium abscessus 4S-0116-R]
gi|392237037|gb|EIV62531.1| putative helicase helY [Mycobacterium abscessus 4S-0116-S]
Length = 922
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 227/450 (50%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 106 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 166 ATVSNAEEFGGWIQTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 224
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S+V P G +R R+ AD ++ + G Q + R P+VI
Sbjct: 225 --TGNPSQVDP---GLTRYIAQRRQADRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVI 279
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + + R P+
Sbjct: 280 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIIVIIDRRTEGLPE 336
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 337 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 392
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 393 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 452
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 453 GLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLERSF 493
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 494 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 523
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 907
>gi|300858449|ref|YP_003783432.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
FRC41]
gi|375288623|ref|YP_005123164.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
3/99-5]
gi|384504630|ref|YP_005681300.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1002]
gi|300685903|gb|ADK28825.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
FRC41]
gi|302330719|gb|ADL20913.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1002]
gi|371575912|gb|AEX39515.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
3/99-5]
Length = 918
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K N + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|383314211|ref|YP_005375066.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
P54B96]
gi|384506722|ref|YP_005683391.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
C231]
gi|384508809|ref|YP_005685477.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
gi|385807503|ref|YP_005843900.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 267]
gi|387136558|ref|YP_005692538.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
42/02-A]
gi|302206162|gb|ADL10504.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
C231]
gi|308276402|gb|ADO26301.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
gi|348607003|gb|AEP70276.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
42/02-A]
gi|380869712|gb|AFF22186.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
P54B96]
gi|383804896|gb|AFH51975.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 267]
Length = 918
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K N + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|384510902|ref|YP_005690480.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
PAT10]
gi|341824841|gb|AEK92362.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
PAT10]
Length = 918
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K N + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|387875716|ref|YP_006306020.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. MOTT36Y]
gi|443305423|ref|ZP_21035211.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. H4Y]
gi|386789174|gb|AFJ35293.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. MOTT36Y]
gi|442766987|gb|ELR84981.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. H4Y]
Length = 926
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 174/514 (33%), Positives = 251/514 (48%), Gaps = 76/514 (14%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKH 113
ATV+NA+E GWI + G T ++ RPVPL + L L D + G
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDTPEQPGAP 223
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
+++ + L+ T RR + + +D S G+ + S R
Sbjct: 224 REPRVNPDLLRHITH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRL 268
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV--- 225
+ P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 269 YRTPARPDVIASLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEH 328
Query: 226 ---ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFAT
Sbjct: 329 RCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFAT 384
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 385 ETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPT 444
Query: 343 EGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 445 EETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG-- 483
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY 457
E+A +L+EQSF Y ++ L + + D + EI+ + K+ L Y
Sbjct: 484 PEQAHRLLEQSFAQYQADRSVVG----LVRGIERGDAMLGEIAGELGGPKAPIL----EY 535
Query: 458 KEM-ANLQEELKAEKRFRTELRRRMELKRFSALK 490
M A + E +A+ R RR+ +AL+
Sbjct: 536 ARMRARISEMERAQSRASRLQRRQAATDALAALR 569
>gi|429730502|ref|ZP_19265149.1| DEAD/DEAH box helicase [Corynebacterium durum F0235]
gi|429147658|gb|EKX90682.1| DEAD/DEAH box helicase [Corynebacterium durum F0235]
Length = 930
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 170/498 (34%), Positives = 245/498 (49%), Gaps = 65/498 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ES L + +V+DE+H+L+D SRG VWEE+I+ + V II LS
Sbjct: 108 IVVMTTEVLRNMIYVESPALERLTHVVMDEIHFLADASRGPVWEEVILNLAESVNIIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG-KHMNRKLSL 120
ATV+N++E W+ + G T +I S +RPVPL + LLPL +H+N+KL
Sbjct: 168 ATVSNSEEFGAWLTTVRGDTTVIVSEQRPVPLDQWMLVNRTLLPLFQPGSTEHVNKKLEA 227
Query: 121 NYLQLSTSEV--KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV-- 176
+L + + + Y R SR N N G+ S S A R +
Sbjct: 228 KVHKLESGSISTQSYDKNQQARFRSRSR---NGNQP----GRSHRSGISRPADRFRPLGR 280
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-------------CNLLDE--C 220
P+VI L ++ MLPAI FIF+R GCDAA+ Q L +++D
Sbjct: 281 PEVIQIL---QAHSMLPAITFIFSRAGCDAALLQCLRSRLTLTTQDEANTIASIIDAGVA 337
Query: 221 EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
++ +L + RF+ L++G AAHHAG LP ++ +EELF +GLV+ VF
Sbjct: 338 DIPAADLEILRFKQWR---------AALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVF 388
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
ATETLA GINMPART VL L K +LT + Q+ GRAGRRGID G+ V+ +
Sbjct: 389 ATETLALGINMPARTVVLEKLVKFNGESHAELTPGQYTQLTGRAGRRGIDTIGNAVVQWS 448
Query: 341 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEE 400
P + L PL+S FT Y M +NLLA ++
Sbjct: 449 PAMEPQAVAGLASTRTYPLISTFTPGYNMSVNLLATI-------------------GYDQ 489
Query: 401 ARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAA-YKE 459
A +L+E+SF + ++ E+ + ++ L + DAI+ + A +
Sbjct: 490 AHRLLEKSFAQFQADGSVVDEVREMERAERRAAELEQRFT-DAINAANPPGDDPATDFLS 548
Query: 460 MANLQEELK-AEKRFRTE 476
NL+ +LK AEK R E
Sbjct: 549 YINLRYQLKTAEKAARKE 566
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 20/222 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI----NTQVIFPLGETAA 762
EK+ R + +RL R+ + + F RI +++ E ++ N I G+ A
Sbjct: 710 EKLLRKQRDVERLRNRVSATTDTLGRTFDRIMDLLAEMDYVEFSDPDNIPHITEEGQRLA 769
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
I E++L +A LR I +L PA+LA V + E K + EP +
Sbjct: 770 LIHNESDLLVAQCLRRGIWDELDPAELAGVVSMCTFENRK-------ETRGEPDAATDAM 822
Query: 823 INVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----L 874
++ + EL + +H + + F+ + WA+G M A L
Sbjct: 823 ATAMNATNRIWRELVHDERRHNLPPTRVPEGGFALAIHQWAAGAPLGYCMAAAAESGAEL 882
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
GD R R+ +D+L Q+ D +++NA DA + + R
Sbjct: 883 TPGDFVRWCRQVVDVLEQVRSTGYTDA-IRRNARDAIHAIRR 923
>gi|379761703|ref|YP_005348100.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-64]
gi|406030489|ref|YP_006729380.1| helicase helY [Mycobacterium indicus pranii MTCC 9506]
gi|378809645|gb|AFC53779.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-64]
gi|405129036|gb|AFS14291.1| putative helicase helY [Mycobacterium indicus pranii MTCC 9506]
Length = 926
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 252/524 (48%), Gaps = 81/524 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKH 113
ATV+NA+E GWI + G T ++ RPVPL + L L D + G
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAP 223
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
+++ + L+ T RR + + +D S G+ + S R
Sbjct: 224 REPRVNPDLLRHITH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRL 268
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV--- 225
+ P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 269 YRTPARPDVIASLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEH 328
Query: 226 ---ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFAT
Sbjct: 329 RCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFAT 384
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 385 ETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPT 444
Query: 343 EGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 445 EETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG-- 483
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY 457
E+A +L+EQSF Y ++ L + + D + EI+ + K A
Sbjct: 484 PEQAHRLLEQSFAQYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------API 532
Query: 458 KEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
E A ++ + +R ++ R L+R A D L G +
Sbjct: 533 LEYARMRARISEMERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|375142138|ref|YP_005002787.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359822759|gb|AEV75572.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
Length = 926
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 171/511 (33%), Positives = 245/511 (47%), Gaps = 58/511 (11%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + ++ L + +V+DEVH+L+D RG VWEE+I++ P +V ++ LS
Sbjct: 107 IVVMTTEVLRNMLYANSPALQGLSHVVMDEVHFLADRMRGAVWEEVILHLPDDVLLVSLS 166
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + + L D + K R
Sbjct: 167 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVMVGKRVFDLFDYRAKGAKRDDRRE 226
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L V P R R+ AD ++ G+++ S+ SI R P VI
Sbjct: 227 LL------VDPEL---LRHIAHRQEADRLADWQPRGRGRNR-SRPSI--CRGPTRPDVIG 274
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDA 239
TL +LPAI FIF+R GCDAAV+ L E + + + R P+A
Sbjct: 275 TL---EREGLLPAITFIFSRVGCDAAVKQCLRSSLRLTTNSERARIAEVIDRRCADLPEA 331
Query: 240 V---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GIN
Sbjct: 332 DLVILDYHEWRE----GLLRGLAAHHAGMLPVFRHTVEELFVAGLVKAVFATETLALGIN 387
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 388 MPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPDVDPAEVAG 447
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F SY M +NL+ Q G + +A KL+E SF
Sbjct: 448 LASTRTFPLRSSFAPSYNMTINLVH-----------------QMGPA--QAHKLLESSFA 488
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
Y ++ + + ++ + +E+ R+ ++A + L++++
Sbjct: 489 QYQADRSVVGLVRGIERGERMLGEIAAELGGGPPIRQG---AADAPILDYVRLRQQISER 545
Query: 471 KRFRTELRRRMELKRFSALKDILKDFENGHL 501
+R ++ R L+R A D L G +
Sbjct: 546 ERAQSRASR---LQRRKAANDALTALRRGDI 573
>gi|420986903|ref|ZP_15450061.1| putative helicase helY [Mycobacterium abscessus 4S-0206]
gi|392186774|gb|EIV12419.1| putative helicase helY [Mycobacterium abscessus 4S-0206]
Length = 914
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 227/450 (50%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 98 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 157
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 158 ATVSNAEEFGGWIQTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S+V P G +R R+ AD ++ + G Q + R P+VI
Sbjct: 217 --TGNPSQVDP---GLTRYIAQRRQADRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVI 271
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + + R P+
Sbjct: 272 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIIVIIDRRTEGLPE 328
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 329 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 384
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 385 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 444
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 445 GLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLERSF 485
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 486 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 515
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 806
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 899
>gi|376290436|ref|YP_005162683.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103832|gb|AEX67429.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 930
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 253/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y K GG R R+ M+S+N + H+ S A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLKAGGFRNRSR----AMDSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEVEL 227
R D L L+ +DMLPAI FIF+R GCDAA+ +L+ + E+S++
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRVGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 228 A------LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
A + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVSGIPEEDLRLLDYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D + + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHDQDGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + E + + +++ E + + N + + +E S + ++ + I +
Sbjct: 797 AGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + + L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|296165173|ref|ZP_06847721.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899481|gb|EFG78939.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 948
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 158/427 (37%), Positives = 212/427 (49%), Gaps = 53/427 (12%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 126 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 185
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + +
Sbjct: 186 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRSTEPGGQPGAG 245
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ V P +R R+ AD S+ R P D
Sbjct: 246 ----REARVSPDL---ARHIAHRREADRMSDWQPRRGRGAGRGGPGRPRFYRP--PGRAD 296
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV---------ELALK 230
+ L S +LPAI F+F+R GCDAAVQ L E E +++ +LA
Sbjct: 297 VIATLDSEGLLPAITFVFSRAGCDAAVQQCLRSPLRLTTEEERAQIAEVIDHRCGDLADA 356
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+L RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GIN
Sbjct: 357 DLAVLGYYEWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGIN 412
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 413 MPARTVVLERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPAEETTEPSA 472
Query: 351 LLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
+ AG+ PL S F SY M +NL+ Q G E+A +L+
Sbjct: 473 V--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLL 511
Query: 406 EQSFGNY 412
EQSF Y
Sbjct: 512 EQSFAQY 518
>gi|376284742|ref|YP_005157952.1| putative helicase [Corynebacterium diphtheriae 31A]
gi|371578257|gb|AEX41925.1| putative helicase [Corynebacterium diphtheriae 31A]
Length = 930
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 251/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y + GG R R+ M S+N + H+ S A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D ++ + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 AGVVSMCIFENRRETRREPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|376242829|ref|YP_005133681.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
gi|372106071|gb|AEX72133.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 930
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 251/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y + GG R R+ M S+N + H+ S A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D ++ + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE+ I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGESLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 AGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|404419067|ref|ZP_11000829.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403661398|gb|EJZ15911.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 919
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 240/506 (47%), Gaps = 74/506 (14%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + ++ S L + +V+DEVH+L+D RG VWEE+I++ P+EV ++ LS
Sbjct: 110 IVVMTTEVLRNMLYANSSALHGLSYVVMDEVHFLADRMRGAVWEEVILHLPEEVLLVSLS 169
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL+ + L L + + L
Sbjct: 170 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLSQHMLVGRRLFDLFEGTDSALVDPELLR 229
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
++ S RR + + AD + R P VI
Sbjct: 230 HI--------------SHRREADRLADWQPRGRGRGRSGGGRPQ----LYRPPSRPDVIA 271
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-----------EDCNLLDECEMSEVELALK 230
TL S +LPAI F+F+R GCDAAVQ E + D + +LA
Sbjct: 272 TL---DSAGLLPAITFVFSRAGCDAAVQQCLRAPLRLTTDEERARIADIVDRRCADLAES 328
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+L RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GIN
Sbjct: 329 DLIVLDYHQWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGIN 384
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ P + E +
Sbjct: 385 MPARTVVLERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSNAEPAE 444
Query: 351 LLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
+ AG+ PL S F+ SY M +NL+ Q G E+A +L+
Sbjct: 445 V--AGLASTRTFPLRSSFSPSYNMTINLVQ-----------------QMG--PEQAHRLL 483
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD-DAIDRKSRRLLSEAAYKEMANLQ 464
E+SF Y ++ + + ++ L +E+ DA RL A +
Sbjct: 484 ERSFAQYQADRSVVGLVRGIARGERMMGELAAELGGADAPILDYVRL--------RAKIG 535
Query: 465 EELKAEKRFRTELRRRMELKRFSALK 490
E +A+ R RRR +AL+
Sbjct: 536 ERERAQSRASRLQRRRAATDALAALR 561
>gi|376254319|ref|YP_005142778.1| putative helicase [Corynebacterium diphtheriae PW8]
gi|372117403|gb|AEX69873.1| putative helicase [Corynebacterium diphtheriae PW8]
Length = 930
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 251/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y + GG R R+ M S+N + H+ S A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D ++ + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + + E + + +++ E + + N + + +E + + ++ + + +
Sbjct: 797 AGVVSMCIFENRRETRGEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|297626525|ref|YP_003688288.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922290|emb|CBL56862.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 933
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 236/491 (48%), Gaps = 55/491 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYLSD RG VWEE+I+ + VQ++ LSATV+NA+E W+ + G +++
Sbjct: 140 VVLDEVHYLSDRFRGAVWEEVILGLAESVQVVALSATVSNAEEFGDWLDTVRGNVDIVVW 199
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
+RPVPL + + L G+ +N KL+ L+ E + +D + R
Sbjct: 200 EKRPVPLYQHVMADHEIYDLFGSDGRSVNPKLT----ALARQESRTTRDD-----SRRPR 250
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAI--RRSQ----VPQVIDTLWHLRSRDMLPAIWFIFN 200
++G Q S + + RR Q P + L+ ++PAI+F+F+
Sbjct: 251 GRNGRGKRRVTYGSGQFGGASSSRVGDRRHQSHGLTPSRAMVVTALQKAGLVPAIYFVFS 310
Query: 201 RRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVA 253
R+GCDAAV+ L L D E +++ +R + R ++ L +G+A
Sbjct: 311 RQGCDAAVRQLLRSGVRLTDRTERAQLRELAQREGASLSETDRAALGWNDFVEALSRGIA 370
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP++K+ +EE F RG +KVVFATETLA GINMPART VL L K +T
Sbjct: 371 AHHAGLLPVFKAIVEEGFTRGWLKVVFATETLALGINMPARTVVLERLVKYNGETHADIT 430
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V++ L PL S F +Y M +NL
Sbjct: 431 PGEYTQLTGRAGRRGIDTEGHAVVLWQTGMDPRAVAGLASKRTYPLRSSFAPNYNMAVNL 490
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ AGR + AR L+EQSF + ++AA + + +
Sbjct: 491 V-----------------RSAGR--DRARSLLEQSFAQFQADRKVVAAARQGVAVAGQI- 530
Query: 434 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 493
D + S + A L++E++ +R + LR++ + +A+ D L
Sbjct: 531 ----------ADAWQQAHCSRGDFASYARLRDEVRELEREQARLRKQ---DQRAAVLDGL 577
Query: 494 KDFENGHLPFL 504
E G + L
Sbjct: 578 SRLEPGDVIHL 588
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 11/195 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI-NTQVIFPLGETAAAIR 765
E+ RL+ + +R S +F RI V+ LD + + P G I
Sbjct: 712 ERALRLERENNVTQRRAADRRNSIAAQFDRICAVLDALGYLDPSHPDEVTPAGTMLTRIY 771
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
E +L +A +R K+ +L QLAAV +++V E + P T
Sbjct: 772 SELDLVVAQAIREKVFAELNGPQLAAVLSTMVYEARAT----DTGGHRMPDDTSARAERA 827
Query: 826 LDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 882
L RS + E+ + H VE LD F+ WASG + +++ + L GD R
Sbjct: 828 L---RSVWREVGLVERDHRVERQRDLDIGFADAAAQWASGASLADILGEFGLTAGDFVRW 884
Query: 883 LRRTIDLLAQIPKLP 897
R+ +DL +QI P
Sbjct: 885 TRQVVDLASQISAAP 899
>gi|379715324|ref|YP_005303661.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 316]
gi|387140624|ref|YP_005696602.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392415|gb|AER69080.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1/06-A]
gi|377654030|gb|AFB72379.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 316]
Length = 918
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGVVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K S+ + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRP------------SRPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|376287741|ref|YP_005160307.1| putative helicase [Corynebacterium diphtheriae BH8]
gi|371585075|gb|AEX48740.1| putative helicase [Corynebacterium diphtheriae BH8]
Length = 930
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 173/508 (34%), Positives = 251/508 (49%), Gaps = 63/508 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+LSD SRG VWEE I+ V +I LS
Sbjct: 108 IVVMTAEVLRNMIYADSEALDRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL- 118
ATV+N++E W+ + G TE+I S RPVPL + + PL E G +N +L
Sbjct: 168 ATVSNSEEFGRWLNTVRGDTEIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLV 226
Query: 119 -SLNYLQLSTSEVKPY-----KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
+ L+ +T++ Y + GG R R+ M S+N + H+ S A+
Sbjct: 227 EHIERLEGTTTDGTEYGRAQLQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALS 281
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE------- 224
R D L L+ +DMLPAI FIF+R GCDAA+ Q + +L E SE
Sbjct: 282 RP------DVLHILQEQDMLPAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIIT 335
Query: 225 ---VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ + R+L R+ L++G AAHHAG LP ++ +E+LF +GLV+ VFA
Sbjct: 336 AGVAGIPEEDLRLLEYRRWRQ----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFA 391
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K G LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 392 TETLALGINMPARTVVLEKLVKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAP 451
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
+ L PLVS F Y M +NLL K + E A
Sbjct: 452 AMDPGQVAGLASTRTYPLVSTFAPGYNMSVNLL---------------KTI----GFEPA 492
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEM 460
+L+E+SF + ++ + +++ D LT ++ A D ++ + ++ E
Sbjct: 493 HRLLEKSFAQFQADGSVVDDIKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEY 551
Query: 461 ANLQEELKAEKRFRTEL---RRRMELKR 485
++ EL E+R L +R ME R
Sbjct: 552 IRIRRELTEEERKHKRLSIEQRDMETTR 579
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 732 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
A V + E + + +++ E + + N + + +E S + ++ + I +
Sbjct: 797 AGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPE 852
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 902
F+ + WA+G + + L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 903 LQKNAVDA 910
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|385676237|ref|ZP_10050165.1| ATP-dependent RNA helicase HelY [Amycolatopsis sp. ATCC 39116]
Length = 910
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 209/423 (49%), Gaps = 58/423 (13%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V + + S + D+ +V+DE+HYL+D RG VWEE+I++ P+ V+++ L
Sbjct: 115 QIVVMTTEVLRNMLYAGSSAIDDLGYVVMDEIHYLADRFRGAVWEEVILHLPEYVRVVGL 174
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G T ++ RPVPL + LL L + G +++
Sbjct: 175 SATVSNAEEFGEWLVTVRGDTTVVVDEHRPVPLWQHMMVGNRLLDLFADDGSDGELRMNP 234
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
L+ EV R HA + G S+ R + P +
Sbjct: 235 GLLR-RVEEV------------GRMHA---PAALRRGRGGRTYSRGP-----RFRPPSRV 273
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
D + L + +LPAI FIF+R GCDAAV + L ++ E A + RI+
Sbjct: 274 DMITRLDAAGLLPAIVFIFSRAGCDAAVSQVTRSGL----RLNTPEEAAEVRRIVDTRTK 329
Query: 241 REP----AIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
P + G L G+A HHAG LP +K +EELF RGLVKVVFATETLA GI
Sbjct: 330 DLPEGDLGVLGYWEWREALENGIAGHHAGLLPAFKETVEELFVRGLVKVVFATETLALGI 389
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K + LT E Q+ GRAGRRGID GH V+V P
Sbjct: 390 NMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPNAVA 449
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F Y M +NL+ A++ H E+AR+L+EQSF
Sbjct: 450 GLASTRTYPLRSSFRPGYNMAINLV--AQLGH-----------------EQARELLEQSF 490
Query: 410 GNY 412
+
Sbjct: 491 AQF 493
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL +++L +R+ S + F RI ++ E L + G A +
Sbjct: 692 ERYHRLAGETEQLERRVAATTHSLARAFDRIRALLAERGYLAEGEDRVTEHGARLARLYS 751
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R+ + L P +LAAV ++LV E S EP V
Sbjct: 752 ESDLLAAECIRHGVWEGLTPPELAAVVSTLVFEA-------RRDSPGEPRLPAGGVPKAW 804
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 878
E + +L E +H ++ D+ F+ V WA G + +++ L GD
Sbjct: 805 QETAKIWTDLAEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAADANGQELSAGD 864
Query: 879 LARLLRRTIDLLAQI 893
R R+ +DLL QI
Sbjct: 865 FVRWSRQVVDLLDQI 879
>gi|306836089|ref|ZP_07469077.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
accolens ATCC 49726]
gi|304568026|gb|EFM43603.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
accolens ATCC 49726]
Length = 938
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 224/468 (47%), Gaps = 63/468 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D + +V+DE+H+L+D SRG VWEE+I+ V II LS
Sbjct: 103 IVVMTTEVLRNMIYADSPALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSL 120
ATV+N++E W+ + G T +I + RPVPL + + PL + E G +N +L
Sbjct: 163 ATVSNSEEFGEWLATVRGDTSVIVTEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELER 222
Query: 121 NYLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L + YK G R +R H + G S + R
Sbjct: 223 RIQRLEAGDSDDGRADYKSGKGFRARAR-HKGGGRSEFHGKAGGRSGSSRPQDRYRPLGR 281
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE 226
P+V+ L +S+DMLPAI FIF+R GCD A+ Q L +L E +E VE
Sbjct: 282 PEVLKVL---QSQDMLPAITFIFSRAGCDGALYQCLRSRMVLTTQEEAEEIKAIVDAGVE 338
Query: 227 ---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
L +R+R + L +G AAHHAG LP ++ +E+LF RGLV+
Sbjct: 339 GIPEEDLQVLDFRRWR------------EALSRGFAAHHAGMLPAFRHIVEDLFIRGLVR 386
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+
Sbjct: 387 AVFATETLALGINMPARTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVV 446
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
P L PL+S F Y M +NLL
Sbjct: 447 QWAPAMDPRFVAGLASTRTYPLISTFAPGYNMAINLLGML-------------------G 487
Query: 398 LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
E++ +L+E+SF + ++ EL + + L ++ DDA+D
Sbjct: 488 FEDSLRLLEKSFAQFQADGSVVEETRELERAEHRVRELREQL-DDAVD 534
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDIN------TQVIFPLGET 760
+K+ R + ++L ++ + + + F RI +++ E ++ + T VI GE
Sbjct: 716 QKLARRERDLEKLQAKVNKATDTLGRTFERIVDLLAEMDYVEFSGAGSDRTPVITEEGER 775
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATGGQPEAATD 828
Query: 821 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 872
+ + ++ + EL + +H + ++ F+ + WA+G M
Sbjct: 829 RMADAMNATWRIYTELSADERRHRLPPTREPEAGFALAIHQWAAGAPLGYCMAAANEAGA 888
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ +DLL QI K D ++Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVVDLLQQIAKT-GYDGQIQRNARRAIDAIQR 931
>gi|302518098|ref|ZP_07270440.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
gi|302426993|gb|EFK98808.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
Length = 946
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 205/407 (50%), Gaps = 47/407 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 145 LYAGSPALTGLGYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 204
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE++ S RPVPL + + L +E G R ++ + L+++ E
Sbjct: 205 LDTVRGDTEVVVSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRT 263
Query: 134 KDGGSRRRNSRKHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
GG RR T + G+ P+VID L S +L
Sbjct: 264 GYGGKRRGREADRERERRQRSRTWTPGR----------------PEVID---RLDSEGLL 304
Query: 193 PAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----I 245
PAI FIF+R GC+AAVQ L DE E V E+ +R + P+ + +
Sbjct: 305 PAITFIFSRAGCEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFL 364
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 365 EGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWN 424
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 425 GEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRP 484
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL+ Q GR +R+L+E SF +
Sbjct: 485 SYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 512
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 727 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 783
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 784 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 840
Query: 826 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 841 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 900
Query: 881 RLLRRTIDLLAQI 893
R ++ ID+L QI
Sbjct: 901 RWTKQIIDVLGQI 913
>gi|395203776|ref|ZP_10394869.1| putative helicase [Propionibacterium humerusii P08]
gi|422439199|ref|ZP_16516022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422470686|ref|ZP_16547186.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422574487|ref|ZP_16650041.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313837528|gb|EFS75242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314927264|gb|EFS91095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314972734|gb|EFT16831.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|328907862|gb|EGG27625.1| putative helicase [Propionibacterium humerusii P08]
Length = 916
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 197/397 (49%), Gaps = 35/397 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPHVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RRPVPLT + + L L D H +++ + ++ E + +D R R
Sbjct: 187 ERRPVPLTQHVAVARHLHGLFD---PHRPTEVNPELVSIAKEEARFQRDDSRRPRGRSGK 243
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204
N + FG ++ A R P I + L ++LPAI F+F+R GC
Sbjct: 244 GKRNVSYGTGQFGGASATRRGRTARPRGPRNQPSRIQVVRSLHKANLLPAIIFVFSRSGC 303
Query: 205 DAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA---------IKGLLKGVAAH 255
DAAV L + +L+ + L +R L+ + + + + +G+AAH
Sbjct: 304 DAAVNQLLNTDLVLTSQQEARHL--RRIAQLHGEGLTDEERRAVGWTHFVAAFERGIAAH 361
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T
Sbjct: 362 HAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPG 421
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 422 EYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG 481
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR ++AR L+E SF +
Sbjct: 482 -----------------SMGR--DKARDLLEHSFAQF 499
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 703 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 762
+F E + RL RS+R + S +F RI V+ L Q + G +
Sbjct: 701 RFAEHAM-RLSRRSERELAKARAKSTSIATQFERIVLVMEALGYLGEGGQTVTDAGRMLS 759
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTV 819
I E +L A +R + L QLAAV +++V E G + L + E + +
Sbjct: 760 GIYSELDLVTAEAIRRGVFDGLDFPQLAAVLSTIVHESRPGDRGHLHRMPDRKSEAAQSQ 819
Query: 820 INVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD--- 876
+ + R+ L+ H +E P LD F+ AWA+G ++ LDD
Sbjct: 820 LRAV------RAEIGLLERDHRIERPRDLDIGFAETSYAWAAGAG-----LEIVLDDMSA 868
Query: 877 GDLARLLRRTIDLLAQI 893
GD R +R+ DL QI
Sbjct: 869 GDFVRQVRQVCDLAGQI 885
>gi|254775080|ref|ZP_05216596.1| HelY [Mycobacterium avium subsp. avium ATCC 25291]
Length = 935
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 223/455 (49%), Gaps = 51/455 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 114 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 173
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + S
Sbjct: 174 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNSEAPGQPSAG 233
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
V P R R+ AD S+ R + P D
Sbjct: 234 ----REPRVNPNL---LRHIAHRREADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPD 286
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALK 230
+ L + +LPAI F+F+R GCDAAVQ L+ + +++EV +LA
Sbjct: 287 VIATLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERVQIAEVIEHRCGDLADA 346
Query: 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GIN
Sbjct: 347 DLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGIN 402
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 403 MPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSA 462
Query: 351 LLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
+ AG+ PL S F SY M +NL+ Q G E+A +L+
Sbjct: 463 V--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLL 501
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 440
EQSF Y ++ + + Q D + +E+
Sbjct: 502 EQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELG 536
>gi|318059086|ref|ZP_07977809.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
gi|318075737|ref|ZP_07983069.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
Length = 935
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 205/407 (50%), Gaps = 47/407 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSPALTGLGYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE++ S RPVPL + + L +E G R ++ + L+++ E
Sbjct: 194 LDTVRGDTEVVVSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRT 252
Query: 134 KDGGSRRRNSRKHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
GG RR T + G+ P+VID L S +L
Sbjct: 253 GYGGKRRGREADRERERRQRSRTWTPGR----------------PEVID---RLDSEGLL 293
Query: 193 PAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----I 245
PAI FIF+R GC+AAVQ L DE E V E+ +R + P+ + +
Sbjct: 294 PAITFIFSRAGCEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFL 353
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 354 EGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWN 413
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 414 GEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRP 473
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL+ Q GR +R+L+E SF +
Sbjct: 474 SYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 501
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 716 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 772
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 773 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 829
Query: 826 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 830 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 889
Query: 881 RLLRRTIDLLAQI 893
R ++ ID+L QI
Sbjct: 890 RWTKQIIDVLGQI 902
>gi|169629275|ref|YP_001702924.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus ATCC
19977]
gi|419713215|ref|ZP_14240642.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M94]
gi|420909776|ref|ZP_15373089.1| putative helicase helY [Mycobacterium abscessus 6G-0125-R]
gi|420916166|ref|ZP_15379471.1| putative helicase helY [Mycobacterium abscessus 6G-0125-S]
gi|420924348|ref|ZP_15387644.1| putative helicase helY [Mycobacterium abscessus 6G-0728-S]
gi|420927055|ref|ZP_15390338.1| putative helicase helY [Mycobacterium abscessus 6G-1108]
gi|420931244|ref|ZP_15394519.1| putative helicase helY [Mycobacterium massiliense 1S-151-0930]
gi|420939772|ref|ZP_15403041.1| putative helicase helY [Mycobacterium massiliense 1S-152-0914]
gi|420941501|ref|ZP_15404759.1| putative helicase helY [Mycobacterium massiliense 1S-153-0915]
gi|420946326|ref|ZP_15409578.1| putative helicase helY [Mycobacterium massiliense 1S-154-0310]
gi|420966557|ref|ZP_15429762.1| putative helicase helY [Mycobacterium abscessus 3A-0810-R]
gi|420977397|ref|ZP_15440577.1| putative helicase helY [Mycobacterium abscessus 6G-0212]
gi|420982771|ref|ZP_15445941.1| putative helicase helY [Mycobacterium abscessus 6G-0728-R]
gi|421007312|ref|ZP_15470424.1| putative helicase helY [Mycobacterium abscessus 3A-0119-R]
gi|421012695|ref|ZP_15475782.1| putative helicase helY [Mycobacterium abscessus 3A-0122-R]
gi|421023437|ref|ZP_15486484.1| putative helicase helY [Mycobacterium abscessus 3A-0731]
gi|421028191|ref|ZP_15491226.1| putative helicase helY [Mycobacterium abscessus 3A-0930-R]
gi|421033685|ref|ZP_15496707.1| putative helicase helY [Mycobacterium abscessus 3A-0930-S]
gi|169241242|emb|CAM62270.1| Probable ATP-dependent DNA helicase HelY [Mycobacterium abscessus]
gi|382946625|gb|EIC70908.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M94]
gi|392122150|gb|EIU47915.1| putative helicase helY [Mycobacterium abscessus 6G-0125-R]
gi|392123850|gb|EIU49612.1| putative helicase helY [Mycobacterium abscessus 6G-0125-S]
gi|392129001|gb|EIU54751.1| putative helicase helY [Mycobacterium abscessus 6G-0728-S]
gi|392135740|gb|EIU61478.1| putative helicase helY [Mycobacterium abscessus 6G-1108]
gi|392136003|gb|EIU61740.1| putative helicase helY [Mycobacterium massiliense 1S-151-0930]
gi|392145287|gb|EIU71012.1| putative helicase helY [Mycobacterium massiliense 1S-152-0914]
gi|392150983|gb|EIU76695.1| putative helicase helY [Mycobacterium massiliense 1S-153-0915]
gi|392156534|gb|EIU82235.1| putative helicase helY [Mycobacterium massiliense 1S-154-0310]
gi|392167978|gb|EIU93659.1| putative helicase helY [Mycobacterium abscessus 6G-0212]
gi|392174789|gb|EIV00456.1| putative helicase helY [Mycobacterium abscessus 6G-0728-R]
gi|392200241|gb|EIV25848.1| putative helicase helY [Mycobacterium abscessus 3A-0119-R]
gi|392205235|gb|EIV30819.1| putative helicase helY [Mycobacterium abscessus 3A-0122-R]
gi|392214406|gb|EIV39958.1| putative helicase helY [Mycobacterium abscessus 3A-0731]
gi|392230226|gb|EIV55736.1| putative helicase helY [Mycobacterium abscessus 3A-0930-S]
gi|392230756|gb|EIV56265.1| putative helicase helY [Mycobacterium abscessus 3A-0930-R]
gi|392251998|gb|EIV77467.1| putative helicase helY [Mycobacterium abscessus 3A-0810-R]
Length = 922
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 225/450 (50%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 106 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 166 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 224
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S V P G +R R+ AD ++ + G Q + R P+VI
Sbjct: 225 --TGNPSRVDP---GLTRYIAQRRQADRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVI 279
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + R P+
Sbjct: 280 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPE 336
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 337 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 392
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 393 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 452
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 453 GLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLERSF 493
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 494 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 523
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETA 761
T E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G
Sbjct: 699 TGERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLL 758
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 759 ARIYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR 814
Query: 822 VINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCA 873
L E + L +++H + +D F V WA+ + A
Sbjct: 815 --GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTA 872
Query: 874 LDDGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
L GD R R+ +DLL QI K PD + R A
Sbjct: 873 LPAGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 907
>gi|392400567|ref|YP_006437167.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
Cp162]
gi|390531645|gb|AFM07374.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
Cp162]
Length = 918
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 241/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPASGGEVNVRLEEHIGRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K S+ S+ + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGK-----------SYSSRP-SRPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|421017602|ref|ZP_15480663.1| putative helicase helY [Mycobacterium abscessus 3A-0122-S]
gi|392212537|gb|EIV38099.1| putative helicase helY [Mycobacterium abscessus 3A-0122-S]
Length = 914
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 225/450 (50%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 98 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 157
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 158 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S V P G +R R+ AD ++ + G Q + R P+VI
Sbjct: 217 --TGNPSRVDP---GLTRYIAQRRQADRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVI 271
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + R P+
Sbjct: 272 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPE 328
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 329 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 384
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 385 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 444
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 445 GLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLERSF 485
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 486 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 515
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETA 761
T E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G
Sbjct: 691 TGERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLL 750
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 751 ARIYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR 806
Query: 822 VINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCA 873
L E + L +++H + +D F V WA+ + A
Sbjct: 807 --GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTA 864
Query: 874 LDDGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
L GD R R+ +DLL QI K PD + R A
Sbjct: 865 LPAGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 899
>gi|419708512|ref|ZP_14235981.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M93]
gi|382943787|gb|EIC68098.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M93]
Length = 922
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 225/450 (50%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P+ V + LS
Sbjct: 106 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPENVALASLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 166 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 224
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S+V P G +R R+ AD ++ + G Q + R P+VI
Sbjct: 225 --TGNPSQVDP---GLTRYIAQRRQADRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVI 279
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + R P+
Sbjct: 280 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPE 336
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 337 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 392
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 393 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 452
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 453 GLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLERSF 493
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 494 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 523
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHYLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDTEVRSAAKA 907
>gi|116670732|ref|YP_831665.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116610841|gb|ABK03565.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 964
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 240/495 (48%), Gaps = 78/495 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LS
Sbjct: 125 VVVMTTEVLRNMLYADSDTLDDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLS 184
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWY----------FSTKTALLPLLDEKG 111
ATV+NA+E W+ + G T++I S RPVPL + F+ +T + E
Sbjct: 185 ATVSNAEEFGAWLDTVRGHTDVIVSEHRPVPLWQHVMVGREIVDLFAGETTFDEIAPEGE 244
Query: 112 KHMNRKLSLNYLQLSTS-EVKPYKDGGSR---RRNSRK---HADMNSNNIVTSFGQHQLS 164
L EV P +R + NSR H + G ++
Sbjct: 245 SDPAATAMTANAALERGFEVNPDLLAMARTESQMNSRARFGHGGRSQRRQQHQRGDNRHG 304
Query: 165 KNSINA-IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMS 223
+ + +R++ PQVI +L +D+LP+I FIF+R GCDAAV +C +
Sbjct: 305 QGGQQSPVRKASRPQVIASL---DRQDLLPSITFIFSRAGCDAAVA---------QCVSA 352
Query: 224 EVELALKRFRILYPDAVREPAIK----------------GLLKGVAAHHAGCLPIWKSFI 267
+ L +R + + V E A GLL+G+AAHHAG LP +K +
Sbjct: 353 GLWLTTEREQQVIARRVDEAAQDIPSDDLDVLGFWSWRDGLLRGLAAHHAGMLPTFKEVV 412
Query: 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327
E+LF GLVK VFATETLA G+NMPAR+ VL L K + +T+ E Q+ GRAGRR
Sbjct: 413 EKLFVEGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVGITAGEYTQLTGRAGRR 472
Query: 328 GIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESD 387
GID GH V++ P L PL S F +Y M +NLLA
Sbjct: 473 GIDVEGHAVVLWQPGTDPTAVAGLASRRTYPLNSSFRPTYNMSINLLA------------ 520
Query: 388 DMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDE-LCKIQKETDVLTSEIS 440
Q GR AR+++E SF + VG + +++E L QK +T +
Sbjct: 521 -----QFGRP--RAREILESSFAQFQADRSVVGLARQVRSREESLAGFQKS---MTCHLG 570
Query: 441 DDAIDRKSRRLLSEA 455
D + RR LS+A
Sbjct: 571 DFTEYSRLRRELSDA 585
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSS 811
G+ I GE +L ++ LR DL ++AA+ + LV + G++ R+
Sbjct: 800 GQKLRRIYGEKDLLISQSLRQGAFSDLDATEVAALASVLVYQAKREERGLRPRM------ 853
Query: 812 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
PS ++ ++++ S + +E++ + + + + WA G +E++
Sbjct: 854 ---PSVSLETAVDIVVREWSVLEDAEEENKLPLTGEPELGLVWPIFKWAKGKHLQEVLNG 910
Query: 872 CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 905
L GD R +++ IDLL Q+ K+P +D RL +
Sbjct: 911 TDLAAGDFVRWVKQVIDLLDQLAKIPGLDPRLSR 944
>gi|397679376|ref|YP_006520911.1| helicase helY [Mycobacterium massiliense str. GO 06]
gi|395457641|gb|AFN63304.1| putative helicase helY [Mycobacterium massiliense str. GO 06]
Length = 960
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 162/450 (36%), Positives = 224/450 (49%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 144 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 203
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 204 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 262
Query: 122 YLQLSTSEVKP-YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S+V P ++RR + + AD + Q + R P+VI
Sbjct: 263 --TGNPSQVDPDLTRYIAQRRQADRFADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVI 317
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + R P+
Sbjct: 318 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPE 374
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 375 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 430
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 431 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 490
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 491 GLASTRTFPLRSSFAPSYNMTINL------VHRMGPA-------------PARELLERSF 531
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 532 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 561
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L +++ S + F RI ++ E ++ + ++ + G A
Sbjct: 739 ERYLRIERDNAQLQRKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 798
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 799 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 852
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 853 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 912
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 913 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 945
>gi|383819339|ref|ZP_09974612.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
gi|383336975|gb|EID15363.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
Length = 914
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 171/521 (32%), Positives = 249/521 (47%), Gaps = 86/521 (16%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V + ++ L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LS
Sbjct: 103 VVVMTTEVLRNMLYANSPALQGLSYVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---------EKGK 112
ATV+NA+E GWI + G T ++ RPVPL + L L D KG+
Sbjct: 163 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGRRLFDLFDYRAARAAAGGKGE 222
Query: 113 -HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
++ +LS + + RR + + D + G+ + +
Sbjct: 223 LRVDPELSRHI---------------AHRREADRLMDWQPRGRGRNRGRPSMYRPPTR-- 265
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDE--CEMSEV- 225
P+VI TL +LPAI FIF+R GCDAAV+ L DE ++EV
Sbjct: 266 -----PEVIATL---DREGLLPAITFIFSRAGCDAAVKQCLRSPLRLTTDEERARIAEVI 317
Query: 226 -----ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
EL + +L RE GLL+G+AAHHAG LP+++ +EELF GLVK VF
Sbjct: 318 DRRCGELPERDLIVLDYHEWRE----GLLRGLAAHHAGMLPVFRHTVEELFSAGLVKAVF 373
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
ATETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ T
Sbjct: 374 ATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWT 433
Query: 341 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEE 400
P E L PL S F SY M +NL+ Q G E+
Sbjct: 434 PEVDPAEVAGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QIG--PEQ 474
Query: 401 ARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM 460
A +L+E SF Y ++ + + + ++ + +E+ DDA E
Sbjct: 475 AHRLLEASFAQYQADRSVVGLRRGIERGERMLAEIAAELGDDA-----------KPVLEY 523
Query: 461 ANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
A L++++ +R ++ R L+R A + L G +
Sbjct: 524 ARLRQQISDRERSQSRASR---LQRRRAASEALASLRRGDI 561
>gi|343521704|ref|ZP_08758670.1| DSHCT domain protein [Actinomyces sp. oral taxon 175 str. F0384]
gi|343401113|gb|EGV13619.1| DSHCT domain protein [Actinomyces sp. oral taxon 175 str. F0384]
Length = 986
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 212/447 (47%), Gaps = 60/447 (13%)
Query: 5 IVVFSCSVGMVSSESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LS
Sbjct: 119 VVVMTTEVLRNMLYSGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPTEVQVISLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+GQ+ G+T ++ S RPVPLT + LLPL + + L+
Sbjct: 179 ATVSNAEEFGDWLGQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPAEAPEQSDRLD 238
Query: 122 YLQ---------------LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN 166
+ L+ +K K + + S Q K
Sbjct: 239 QSEQTDLERQAERTGQPPLNPELLKAVKQARRAAASGGASKNGYRGRGGGSARGTQPWKR 298
Query: 167 SINAIR------------RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--E 212
S R R + P + + L +LPAI F+F+R GC+ AV +
Sbjct: 299 SARGGRAPRRGEGGARTARLKPPSRLQVVTALEGTRLLPAIVFVFSRAGCEQAVHQVVSA 358
Query: 213 DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKS 265
+L + E + + ++R P + + G L +GVAAHHAG LP++K
Sbjct: 359 GVDLTTDAEAARIREVIERRTADIPSG--DLGVLGFHFWAHALERGVAAHHAGLLPVFKE 416
Query: 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325
+EELF GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAG
Sbjct: 417 TVEELFSAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAG 476
Query: 326 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 385
RRGID GH V++ L PLVS F +Y M +NLL M +
Sbjct: 477 RRGIDVEGHAVVLAADDVEPATVSSLASRRTYPLVSAFRPTYNMAVNLLERMPRMRV--- 533
Query: 386 SDDMKALQAGRSLEEARKLVEQSFGNY 412
R+++EQSF +
Sbjct: 534 ----------------REVLEQSFAQF 544
Score = 45.8 bits (107), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 708 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIF 755
K R KA ++RL +RIE + + F + V+ H R L +
Sbjct: 755 KWSRAKAEAERLQRRIETRTGTIARLFDAVCEVLLELGYLHPVDRGHPERELRVTGA--- 811
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI-YE 814
G+ A I E +L +A LR + DL A+LA ++ V E RL + +
Sbjct: 812 --GKVLARIYAERDLLIAECLRTGVFEDLSAAELAGALSACVYE---PRLSAQSIGLPVA 866
Query: 815 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
P T + + +L+ +E + +G V+AW G +++ L
Sbjct: 867 PGTRLGQCLRAQLGVSHRLHDLESLARIEASSGAEPALAGAVQAWCDGAQLADILDATEL 926
Query: 875 DDGDLARLLRRTIDLLAQIPKL---PDVDQRLQKNAVDAS 911
GD R ++ +D++ QI L PD + D S
Sbjct: 927 TAGDFVRWCKQLLDVVGQIASLSPPPDASPEQARAVTDLS 966
>gi|365870077|ref|ZP_09409621.1| ATP-dependent DNA helicase HelY [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997266|gb|EHM18478.1| ATP-dependent DNA helicase HelY [Mycobacterium massiliense CCUG
48898 = JCM 15300]
Length = 914
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 225/453 (49%), Gaps = 53/453 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 98 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 157
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 158 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 216
Query: 122 YLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
+ S+V P Y ++RR + + AD + Q + R P
Sbjct: 217 --TGNPSQVDPDLTRYI---AQRRQADRFADFDRPRRRGPQ---QRTSRPPTLYRPPSRP 268
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRIL 235
+VI L +LPAI FIF+R GCD AV Q L L E E E+ + R
Sbjct: 269 EVIT---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIVAIIDRRTEG 325
Query: 236 YPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
P+A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA
Sbjct: 326 LPEADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLA 381
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K LT E Q+ GRAGRRGID GH V++ TP
Sbjct: 382 LGINMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPT 441
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
E L PL S F SY M +NL +H + AR+L+E
Sbjct: 442 EIAGLASTRTFPLRSSFAPSYNMTINL------VHRMGPA-------------PARELLE 482
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
+SF Y ++ + + +K D + E+
Sbjct: 483 RSFAQYQADRSVVGLVRGIERGRKMLDEIAGEL 515
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 806
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 899
>gi|404214977|ref|YP_006669172.1| Superfamily II RNA helicase [Gordonia sp. KTR9]
gi|403645776|gb|AFR49016.1| Superfamily II RNA helicase [Gordonia sp. KTR9]
Length = 904
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 249/523 (47%), Gaps = 67/523 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 70 VVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 129
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + L L D
Sbjct: 130 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRLFDLFDP------------ 177
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI- 180
++ P + G+R R + + + I+ + + + S+
Sbjct: 178 ------ADTGPARKAGTRPRVNPELKRQIRHRILMADDERESSRGRGRGRGSGPRRDGRG 231
Query: 181 ------DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF 232
+ + L +LPAI FIF+R GCDAA+ Q L +LL E+ EV+ + R
Sbjct: 232 PALSRPNLVTRLDREGLLPAIGFIFSRVGCDAALAQCLRSGISLLTPAEIGEVDAIVDRH 291
Query: 233 RI-LYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
L P + + +GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA
Sbjct: 292 LTELSPTDLDVLGVHEWREGLRRGLASHHAGMLPTFRHTVEELFVRGLVRMVFATETLAL 351
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
GINMPAR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE
Sbjct: 352 GINMPARSVVLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEE 411
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVE 406
L A PL S F+ Y M +NLL GR L+ AR+L+
Sbjct: 412 VAGLAGARTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLH 451
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR--------KSRRLLSEAAYK 458
+SF + ++ +L + Q+ L E++ A R A +
Sbjct: 452 RSFAQFQADRSVVGQARKLDEAQRALRKLDGELARTAQARGLEPAEAEADSEEEPYAGFL 511
Query: 459 EMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
L+E++++ +R +L+ R A+ L + GH+
Sbjct: 512 GYVTLREDIRSRER---DLKFRRRTDTHDAITADLAALKRGHV 551
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 804
+T ++ G+ I E++L + +R + DL LAAV A+LV E + V
Sbjct: 727 HTMLVTDSGKLLGRIYSESDLVVTECIRAGVWDDLSAPDLAAVVAALVYESRRDSYSGVD 786
Query: 805 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 864
+SS+ + + S ++++H V D+ FS V WASG +
Sbjct: 787 ALPGSSSMRAAMAATVGIW-------SRVTAVEQRHRVSPTREPDTGFSVAVATWASGRS 839
Query: 865 WREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
E ++ L GD R R+ +DLL QI D RL A A + R
Sbjct: 840 LGEALLLAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGSDTRLGGTARAAVKAIRR 896
>gi|418249757|ref|ZP_12876079.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus 47J26]
gi|420951751|ref|ZP_15414996.1| putative helicase helY [Mycobacterium massiliense 2B-0626]
gi|420955921|ref|ZP_15419159.1| putative helicase helY [Mycobacterium massiliense 2B-0107]
gi|420961566|ref|ZP_15424792.1| putative helicase helY [Mycobacterium massiliense 2B-1231]
gi|420991891|ref|ZP_15455040.1| putative helicase helY [Mycobacterium massiliense 2B-0307]
gi|420997730|ref|ZP_15460868.1| putative helicase helY [Mycobacterium massiliense 2B-0912-R]
gi|421002168|ref|ZP_15465294.1| putative helicase helY [Mycobacterium massiliense 2B-0912-S]
gi|353451412|gb|EHB99806.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus 47J26]
gi|392159833|gb|EIU85527.1| putative helicase helY [Mycobacterium massiliense 2B-0626]
gi|392187191|gb|EIV12833.1| putative helicase helY [Mycobacterium massiliense 2B-0307]
gi|392187442|gb|EIV13083.1| putative helicase helY [Mycobacterium massiliense 2B-0912-R]
gi|392197381|gb|EIV22996.1| putative helicase helY [Mycobacterium massiliense 2B-0912-S]
gi|392251600|gb|EIV77072.1| putative helicase helY [Mycobacterium massiliense 2B-1231]
gi|392254633|gb|EIV80098.1| putative helicase helY [Mycobacterium massiliense 2B-0107]
Length = 922
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/450 (36%), Positives = 224/450 (49%), Gaps = 47/450 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 106 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 166 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 224
Query: 122 YLQLSTSEVKP-YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ S+V P ++RR + + AD + Q + R P+VI
Sbjct: 225 --TGNPSQVDPDLTRYIAQRRQADRFADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVI 279
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPD 238
L +LPAI FIF+R GCD AV Q L L E E E+ + R P+
Sbjct: 280 T---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPE 336
Query: 239 AV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA GI
Sbjct: 337 ADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLALGI 392
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 393 NMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIA 452
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
L PL S F SY M +NL +H + AR+L+E+SF
Sbjct: 453 GLASTRTFPLRSSFAPSYNMTINL------VHRMGPA-------------PARELLERSF 493
Query: 410 GNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
Y ++ + + +K D + E+
Sbjct: 494 AQYQADRSVVGLVRGIERGRKMLDEIAGEL 523
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L +++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQRKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 907
>gi|384515623|ref|YP_005710715.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 809]
gi|334696824|gb|AEG81621.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 809]
Length = 918
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 240/904 (26%), Positives = 385/904 (42%), Gaps = 184/904 (20%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + +L E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRAQFKAGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S S + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK---------GL 248
R GC+ A+ Q + +L + + +E E+A RI+ + E +K L
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFRKWRSAL 352
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
++G AAHHAG LP ++ +EELF +GLV VFATETLA GINMPART VL L K
Sbjct: 353 MRGFAAHHAGMLPAFRHIVEELFTKGLVHAVFATETLALGINMPARTVVLEKLVKYNGEA 412
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+ Y
Sbjct: 413 HVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPGYN 472
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS----NVMLAAKDE 424
M +NLL K + + A +L+E+SF + +V+ +
Sbjct: 473 MSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVVRNIERS 513
Query: 425 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK 484
+++K L++ I ++ I++ + E +L+ EL E+R K
Sbjct: 514 EARVKKLETQLSAHIPEEDIEK----------FVEYIDLRRELTDEER---------RAK 554
Query: 485 RFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSF 544
R S L+ ++ E V + ++ LG ++ K +A +
Sbjct: 555 RHS------------------LEQREIE-VSRVLASLNLGDVIAMPGKKRPLLAVV---- 591
Query: 545 ALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD--- 601
+ SN ++ D KP W T W V FP + G
Sbjct: 592 ----VQPSN----NSSDPKP-----------WVTMESGWSGRVDTTAFPMPPVVVGHMKL 632
Query: 602 -----ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESD 656
A PR+ ++ + +EKL T+S + ++
Sbjct: 633 SRATIAQPRKNSKYVVRQ----FEKL----------------TYSRPKRLKAQQRHRPTE 672
Query: 657 EVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARS 716
++ + + + R +AR+ +K+AR + KE ++ TV+ + + + R
Sbjct: 673 KITELRARIRSHPAHQWDNREDLARIGEKLARAQ--KETSRLRTTVETATDTLGKTFDRI 730
Query: 717 KRLTKRIEQIEPSGWKEFLR-ISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 775
L ++ + EF+ I V E GE A I E++L +A
Sbjct: 731 LGLLGELDYV------EFIDGIPQVTEE--------------GENLAKIHNESDLLVAQC 770
Query: 776 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE 835
L+ I L PA+LA V + E K + ++ + + N + + DE L
Sbjct: 771 LKRGIWDGLDPAELAGVISMCTFENRKETRGEPEAATEPMAVAMNNTLRLWDE-----LS 825
Query: 836 LQE-KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDL 889
+ E ++ + + ++ FS + W +G + A L GD R R+ IDL
Sbjct: 826 VNERRYQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAGDFVRQCRQVIDL 885
Query: 890 LAQI 893
L QI
Sbjct: 886 LEQI 889
>gi|221632204|ref|YP_002521425.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
gi|221156835|gb|ACM05962.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
Length = 948
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 210/412 (50%), Gaps = 48/412 (11%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V ++ + L V ++ DE+HYL+D RGT WEE II CP+ +Q+ICLS
Sbjct: 113 IVVMTTEVLRNMLLQTPWELDSVQCVIFDEIHYLADPERGTTWEESIILCPEHIQLICLS 172
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSL 120
ATV+NA E+A WI + H +LI + R VPL WYF + L ++D G+
Sbjct: 173 ATVSNAQEIADWISRTHRPIQLIVHTERAVPLALWYFYDRKLRL-VIDHHGR-------- 223
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+V Y + G R + + + I A
Sbjct: 224 --------QVADYSNVGGEIRALIGRGGLTAERRREAEEAEPPPWEIIQA---------- 265
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCD--AAVQYLEDCNLL-DECEMSEVELALKRFRI-LY 236
L + DMLPAI+F+FNRR C+ A + NL+ D + ++ F L
Sbjct: 266 -----LAAEDMLPAIYFLFNRRDCEDYATRLAMMRVNLVRDRATRQRIAHVIESFLASLR 320
Query: 237 PDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
P+ ++ ++ KG+ HHAG LPI K +E LF +GL+KVVFAT+TLA G+NMP
Sbjct: 321 PEDRELSQVQTIVQLAAKGIGFHHAGLLPILKQLVEVLFSQGLMKVVFATDTLALGVNMP 380
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
ART V+ ++K R LT NE QMAGRAGRRG+D RG+VV+ +P+ +E +
Sbjct: 381 ARTVVIGRMTKWDGRRRRLLTPNEFQQMAGRAGRRGMDERGNVVVPYSPWISFKEVLAVA 440
Query: 353 FAGVEPLVSQFTASYGMVLNLL---AGAKVMHLSNES-DDMKALQAGRSLEE 400
+EP+ S FT Y VLNL G +V L ES +A Q R LEE
Sbjct: 441 TGELEPVRSAFTIRYNTVLNLWDPPRGDRVRQLFQESLAQYQAAQRVRLLEE 492
>gi|415717362|ref|ZP_11466813.1| helicase [Gardnerella vaginalis 1500E]
gi|388060962|gb|EIK83632.1| helicase [Gardnerella vaginalis 1500E]
Length = 877
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/411 (36%), Positives = 206/411 (50%), Gaps = 70/411 (17%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + S L + ++LDE+HYL+D RG VWEE+II+ PK V+II LS
Sbjct: 143 IVVMTTEVLRNMLYESSITLNSLGFVILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLS 202
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKGK--- 112
ATV+N ++ + W+ + G T L+ RPVPL + T+ LL L D K
Sbjct: 203 ATVSNVEDFSAWLESVRGTTHLVVDEHRPVPLERHVVIQEDGRTEPELLDLYDRDNKGNE 262
Query: 113 ------HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN 166
+ RKL+ + + Y D R R +K V G + K+
Sbjct: 263 TKRVNPALTRKLN-EWEHRARRRQDSYSDSKYRYRKGKKR--------VVRRGVAESDKS 313
Query: 167 SINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECE 221
+ R P+ VID L +LR MLP I+FIF+R GCD AVQ + L+ + E
Sbjct: 314 A-----RRHTPKRWAVIDELDYLR---MLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDE 365
Query: 222 MSEVE------------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 263
M E+ L+ +RFR L +G AAHHAG + ++
Sbjct: 366 MYEIRKIVDTMVANQLSKEDLHALSFERFRF------------SLEQGFAAHHAGMIALF 413
Query: 264 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 323
+ +E LF+RGL+KVVFATETLA G+NMPAR+ V+ L K +G + LT E Q+ GR
Sbjct: 414 RHIVETLFERGLIKVVFATETLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGR 473
Query: 324 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
AGRRGID+ GH VLV + L V PL S F ++ M +NLL
Sbjct: 474 AGRRGIDDIGHAVLVDHADFIPAQAAALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|414580420|ref|ZP_11437561.1| putative helicase helY [Mycobacterium abscessus 5S-1215]
gi|420877509|ref|ZP_15340878.1| putative helicase helY [Mycobacterium abscessus 5S-0304]
gi|420882782|ref|ZP_15346145.1| putative helicase helY [Mycobacterium abscessus 5S-0421]
gi|420889027|ref|ZP_15352379.1| putative helicase helY [Mycobacterium abscessus 5S-0422]
gi|420893590|ref|ZP_15356932.1| putative helicase helY [Mycobacterium abscessus 5S-0708]
gi|420898727|ref|ZP_15362062.1| putative helicase helY [Mycobacterium abscessus 5S-0817]
gi|420904657|ref|ZP_15367976.1| putative helicase helY [Mycobacterium abscessus 5S-1212]
gi|420971456|ref|ZP_15434651.1| putative helicase helY [Mycobacterium abscessus 5S-0921]
gi|421048973|ref|ZP_15511969.1| putative helicase helY [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|421052065|ref|ZP_15515059.1| putative helicase helY [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392089000|gb|EIU14820.1| putative helicase helY [Mycobacterium abscessus 5S-0304]
gi|392089752|gb|EIU15568.1| putative helicase helY [Mycobacterium abscessus 5S-0421]
gi|392090658|gb|EIU16470.1| putative helicase helY [Mycobacterium abscessus 5S-0422]
gi|392102180|gb|EIU27967.1| putative helicase helY [Mycobacterium abscessus 5S-0708]
gi|392106436|gb|EIU32221.1| putative helicase helY [Mycobacterium abscessus 5S-0817]
gi|392107122|gb|EIU32905.1| putative helicase helY [Mycobacterium abscessus 5S-1212]
gi|392120244|gb|EIU46011.1| putative helicase helY [Mycobacterium abscessus 5S-1215]
gi|392168167|gb|EIU93846.1| putative helicase helY [Mycobacterium abscessus 5S-0921]
gi|392240668|gb|EIV66161.1| putative helicase helY [Mycobacterium massiliense CCUG 48898]
gi|392243138|gb|EIV68625.1| putative helicase helY [Mycobacterium massiliense CCUG 48898]
Length = 922
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 225/453 (49%), Gaps = 53/453 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 106 VVVMTTEVLRNMLYADSPALHGLSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 166 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 224
Query: 122 YLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
+ S+V P Y ++RR + + AD + Q + R P
Sbjct: 225 --TGNPSQVDPDLTRYI---AQRRQADRFADFDRPRRRGPQ---QRTSRPPTLYRPPSRP 276
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRIL 235
+VI L +LPAI FIF+R GCD AV Q L L E E E+ + R
Sbjct: 277 EVIT---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIVAIIDRRTEG 333
Query: 236 YPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
P+A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA
Sbjct: 334 LPEADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLA 389
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K LT E Q+ GRAGRRGID GH V++ TP
Sbjct: 390 LGINMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPT 449
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
E L PL S F SY M +NL +H + AR+L+E
Sbjct: 450 EIAGLASTRTFPLRSSFAPSYNMTINL------VHRMGPA-------------PARELLE 490
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
+SF Y ++ + + +K D + E+
Sbjct: 491 RSFAQYQADRSVVGLVRGIERGRKMLDEIAGEL 523
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 907
>gi|41407926|ref|NP_960762.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396280|gb|AAS04145.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 821
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 243/526 (46%), Gaps = 85/526 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 114 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 173
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D +
Sbjct: 174 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-------- 225
Query: 122 YLQLSTSEVKPYKDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAI 171
P + G R R N R+ AD S+
Sbjct: 226 ---------APGQPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRP 276
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV- 225
R + P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 277 RFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERVQIAEVI 336
Query: 226 -----ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VF
Sbjct: 337 EHRCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVF 392
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
ATETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++
Sbjct: 393 ATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWN 452
Query: 341 PYEGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
P E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 453 PTEETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG 493
Query: 396 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA 455
E+A +L+EQSF Y ++ + + Q D + +E+ +A
Sbjct: 494 --PEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGG-----------PKA 540
Query: 456 AYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
E A ++ + +R +T R L R A D L G +
Sbjct: 541 PILEYARMRARISEMERAQTRASR---LHRRQAASDALAALRRGDI 583
>gi|387138626|ref|YP_005694605.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|389850379|ref|YP_006352614.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 258]
gi|349735104|gb|AEQ06582.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|388247685|gb|AFK16676.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 258]
Length = 918
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGVVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K S+ + R P+V L+ L+S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRP------------SRPQQDRYRPQGRPEV---LYVLQSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|441516395|ref|ZP_20998145.1| putative helicase [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456981|dbj|GAC56106.1| putative helicase [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 936
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 202/380 (53%), Gaps = 29/380 (7%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ + S L + +V+DEVH+L+D RG VWEE+I+ V+++ LS
Sbjct: 105 IVVMTTEVLRNMIYANSPALQGLSHVVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLS 164
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G TE+I S RPVPL Y L L D K R+
Sbjct: 165 ATVSNAEEFGDWIATVRGDTEVIVSEHRPVPLHQYMLVGGRLFELFDRKSPPHGRR---- 220
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+V P R ++ A ++ ++ + G P++I
Sbjct: 221 -------QVNP-----ELTRYIKQRALLDHDDRDSGRGHRGRGDRRHRRSTTMPRPRLIQ 268
Query: 182 TLWHLRSRDMLPAIWFIFNRRGC-DAAVQYLE-DCNLLDECEMSEVELALKRFRI-LYPD 238
L +LPAI+FIF+R+GC DA VQ + D NLL+ ++S+V+ ++R L P
Sbjct: 269 LL---EEDALLPAIFFIFSRKGCEDAFVQCVRSDLNLLEPEQVSQVDEVVERHLTDLSPG 325
Query: 239 AVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
++ GL +G AAHHAG LP+++ +EELF RGL KVVFATETLA GINMPAR
Sbjct: 326 DAEVLGVEQWWAGLRRGFAAHHAGMLPMFRQAVEELFVRGLTKVVFATETLALGINMPAR 385
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ VL L K + LT E Q+ GRAGRRGID G+ V++ TP + L A
Sbjct: 386 SVVLERLIKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGNAVVLWTPEVLPDRVAGLAGA 445
Query: 355 GVEPLVSQFTASYGMVLNLL 374
PL S F Y MVLNL+
Sbjct: 446 RTFPLRSSFRPEYNMVLNLI 465
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 27/258 (10%)
Query: 677 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 736
++VARL+ ++ R+ + + + E++ RL L + I++ + ++F
Sbjct: 680 SEVARLRNRL-RSHPIHKQPGLDKLFRLGEQR-NRLVRDVASLERSIDERKSRLEEDFDI 737
Query: 737 ISNVIHETRALDINTQ---VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 793
+ V+ E L+ + + + P G+ I E +L +A +R I L P +LAAV
Sbjct: 738 VVAVLRELGYLESDGRGGLQVTPTGDVLRRIYAETDLLVAECIRAGIWHRLSPVELAAVV 797
Query: 794 ASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH--GVE-- 843
+S+V + G + + ++ E + V + E+Q +H G E
Sbjct: 798 SSMVYQSRRDTYGGGIDSMPGSKTVREALAETLAVWQATN-------EVQARHSGGSESL 850
Query: 844 IPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPD 898
+ D+ F + AWA+G + E + + L GD R R+ IDLL QI
Sbjct: 851 VTAEPDTGFCAPISAWAAGRSLDEALTAASAGGNLLSPGDFVRWNRQVIDLLEQIRNSVG 910
Query: 899 VDQRLQKNAVDASNVMDR 916
D L A A + R
Sbjct: 911 ADDPLAGTARRAVKSLRR 928
>gi|386740364|ref|YP_006213544.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 31]
gi|384477058|gb|AFH90854.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 31]
Length = 918
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 240/470 (51%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + ++ E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFKSGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S K S+ + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGKSHSSRP------------SRPQQDRYRPQGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRA 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEKLFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLAAKDE 424
Y M +NLL K + ++ A +L+E+SF + GS V L K E
Sbjct: 471 YNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLVRKIE 511
Query: 425 L--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 512 RSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|271967138|ref|YP_003341334.1| nuclear exosomal RNA helicase MTR4 [Streptosporangium roseum DSM
43021]
gi|270510313|gb|ACZ88591.1| putative nuclear exosomal RNA helicase MTR4 ; K01529
[Streptosporangium roseum DSM 43021]
Length = 909
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 242/510 (47%), Gaps = 81/510 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IV+ + V M+ + SG L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LS
Sbjct: 119 IVIMTTEVLRNMLYAGSGTLAGLGFVVMDEVHYLADRFRGAVWEEVIIHLPESVRLVALS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLS 119
ATV+NA+E W+G++ G T +I RPVPL + L L DE G+ +++
Sbjct: 179 ATVSNAEEFGEWMGEVRGDTSVIVDEHRPVPLWQHMLAGNRLYDLFVADEDGRRP--QVN 236
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
+ ++++ E + G RR SR RR+ P
Sbjct: 237 PHLMRIAKDEER-QSYGRGRRGYSRP--------------------------RRAAPPDR 269
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYP 237
+ L + +LPAI FIF+R GCDAAV Q L L + E ++ + P
Sbjct: 270 ASAIERLDADGLLPAITFIFSRAGCDAAVIQCLHAGIRLTTDAERHQIRQIVDERTAHLP 329
Query: 238 DAVREPAIKGLL-------KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
D + A+ G L +G+AAHHAG LP +K +EELF R LVK VFATETLA GIN
Sbjct: 330 D--EDLAVLGYLEWRDGLERGLAAHHAGMLPAFKEVVEELFTRNLVKAVFATETLALGIN 387
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPAR+ V+ L K LT E Q+ GRAGRRGID GH V+ P +
Sbjct: 388 MPARSVVIEKLDKWNGETHADLTPGEYTQLTGRAGRRGIDVEGHAVVQWQPGMDPLQVAG 447
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F SY M +NL+ Q GR E AR L+E SF
Sbjct: 448 LASTRTYPLRSSFRPSYNMAVNLVG-----------------QVGR--ERARTLLESSFA 488
Query: 411 NYVGSNVMLAAKDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE 466
+ ++ ++ + ++ + +T + D RR LS + + E
Sbjct: 489 QFQADRAVVGIAKQVRRAEEALEGYREAMTCHLGDFEEYAAMRRALS--------DREAE 540
Query: 467 LKAEKRFRTELRRRMELKRFSALK--DILK 494
L R R RR L+ ALK DI++
Sbjct: 541 L---SRQRGAARRAQALRSLEALKPGDIIR 567
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 17/253 (6%)
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
++ + ++ RL+K I R + D ++ E K L+ ++ L +R+E
Sbjct: 658 DHAAEDDEINRLRKAI-RQHPCHGCDEREDHARWAERYYKLLR-ETEGLRRRVEGRSHVI 715
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
+ F ++ V+ + L+ + + G A + E +L A LR + +L PA+LA
Sbjct: 716 ARTFDKVCGVLDQLGYLE--GESVTAEGRRLAQLYTELDLLTAECLRAGLWEELDPAELA 773
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE---KHGVEIPCC 847
AV +SLV E + +P V L + + EL+ HG+
Sbjct: 774 AVVSSLVFES------RQADDARQPRIPAGGVQKALGDMVRLWGELESIEGDHGLSFIRE 827
Query: 848 LDSQFSGMVEAWASGLTWREMMMD----CALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 903
D F+ WA G ++ D L GD R +++ +DLL QI ++
Sbjct: 828 PDFGFAWAAFRWAKGQNLDAVLRDGVNGAELAAGDFVRWIKQLLDLLGQISDAAPKSSKV 887
Query: 904 QKNAVDASNVMDR 916
++N A + + R
Sbjct: 888 KQNTGKAMDALRR 900
>gi|418420273|ref|ZP_12993454.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus subsp.
bolletii BD]
gi|364000110|gb|EHM21311.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus subsp.
bolletii BD]
Length = 914
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 225/453 (49%), Gaps = 53/453 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P++V + LS
Sbjct: 98 VVVMTTEVLRNMLYADSPALHGLSHVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLS 157
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D + + R+ S
Sbjct: 158 ATVSNAEEFGGWIKTVRGDTTVVVDETRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG 216
Query: 122 YLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
+ S+V P Y ++RR + + AD + Q + R P
Sbjct: 217 --TGNPSQVDPDLTRYI---AQRRQADRFADFDRPRRRGPQ---QRTSRPPTLYRPPSRP 268
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRIL 235
+VI L +LPAI FIF+R GCD AV Q L L E E E+ + R
Sbjct: 269 EVIT---RLDEDGLLPAITFIFSRAGCDGAVAQCLRSRLRLTTEEERREIVAIIDRRTEG 325
Query: 236 YPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
P+A RE GLL+G+AAHHAG LP+++ +EELF +GLVK VFATETLA
Sbjct: 326 LPEADLDVLGYWQWRE----GLLRGIAAHHAGMLPVFRHTVEELFTKGLVKAVFATETLA 381
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K LT E Q+ GRAGRRGID GH V++ TP
Sbjct: 382 LGINMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVEPT 441
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
E L PL S F SY M +NL +H + AR+L+E
Sbjct: 442 EIAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------DPARELLE 482
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
+SF Y ++ + + +K D + E+
Sbjct: 483 RSFAQYQADRSVVGLVRGIERGRKMLDEIAGEL 515
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVASATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + LKPA+LAAV + ++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASGVLYES----RGDTVSATGEAPTAALR-- 806
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 875
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALGRLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 876 DGDLARLLRRTIDLLAQIPK-LPDVDQRLQKNA 907
GD R R+ +DLL QI K PD + R A
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVRSAAKA 899
>gi|325963293|ref|YP_004241199.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469380|gb|ADX73065.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
Length = 977
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 156/441 (35%), Positives = 220/441 (49%), Gaps = 62/441 (14%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ++ LS
Sbjct: 140 VVVMTTEVLRNMLYADSATLDDLGYVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLS 199
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWY----------FSTKTA---LLPLLD 108
ATV+NA+E W+ + G T++I S RPVPL + F+ +T + P ++
Sbjct: 200 ATVSNAEEFGAWLDTVRGDTDIIVSEHRPVPLWQHVMVGRQIMDLFAGETTFDEIAPPVE 259
Query: 109 E----------KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 158
E K +++ + L ++ SE + G R N+
Sbjct: 260 EGETQPVSSAESSKGRGFEVNPDLLAVARSESQQSFRGRPGGPGGRGQRSRRGNDRPGRL 319
Query: 159 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 218
G + IR + PQVI +L + D+LPAI FIF+R GCDAAV L
Sbjct: 320 GDDR-------GIRPASRPQVIASLDRM---DLLPAITFIFSRAGCDAAVAQCVGSGLWL 369
Query: 219 ECEMSEVELALK---RFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELF 271
E + +A + + PD + GL++G AAHHAG LP +K +E+LF
Sbjct: 370 TTEKEQRIIAQRVDEAGHDIPPDDLDVLGFWTWRDGLIRGFAAHHAGMLPTFKEVVEKLF 429
Query: 272 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331
GLVK VFATETLA G+NMPAR+ VL L K + +T+ E Q+ GRAGRRGID
Sbjct: 430 ADGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRAGRRGIDV 489
Query: 332 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
GH V++ P L PL S F +Y M +NLLA
Sbjct: 490 EGHAVVLWQPGTDPTAVAGLASRRTYPLNSSFRPTYNMSINLLA---------------- 533
Query: 392 LQAGRSLEEARKLVEQSFGNY 412
Q GR+ AR+++E SF +
Sbjct: 534 -QFGRA--RAREILESSFAQF 551
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 763
E+ +L+ + L ++I+ + K F R+ +V+ L+ I P G+
Sbjct: 759 ERWWKLRRETDGLVRQIQGRTNTIAKTFDRVCDVLSAYGYLEPAADGRLSISPDGQRLRR 818
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 817
I GE +L ++ LR DL A++AA+ + LV + G++ R+ PS
Sbjct: 819 IYGEKDLLISQSLRLGAFDDLDAAEVAALASVLVYQAKREDRGLRPRM---------PSV 869
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM--VEAWASGLTWREMMMDCALD 875
++ ++++ S+ +++E++ ++P + + + V WA G ++++ L
Sbjct: 870 SLETSVDIVVREWSALEDVEEEN--KLPLTGEPELGLIWPVYKWARGRHLQDVLSGTDLA 927
Query: 876 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
GD R +++ +DLL Q+ K+P +D RL + +A ++ R
Sbjct: 928 AGDFVRWVKQVVDLLDQLAKIPGLDPRLARLCTEAIKLIRR 968
>gi|337290711|ref|YP_004629732.1| ATP-dependent DNA helicase [Corynebacterium ulcerans BR-AD22]
gi|334699017|gb|AEG83813.1| ATP-dependent DNA helicase [Corynebacterium ulcerans BR-AD22]
Length = 918
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 242/907 (26%), Positives = 387/907 (42%), Gaps = 190/907 (20%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVP + + PL + + G +N +L + +L E +K GG R
Sbjct: 193 EHRPVPFNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRGQFKAGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S S + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRS 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT ++ Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPDQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS----NVMLAAK 422
Y M +NLL K + + A +L+E+SF + +V+ +
Sbjct: 471 YNMSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVVRNIE 511
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+++K L++ I ++ I+ + E +L+ EL E+R
Sbjct: 512 RSEARVKKLETQLSAHIPEEDIEN----------FVEYIDLRRELTDEER---------R 552
Query: 483 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
KR S L+ ++ E V + ++ LG ++ K +A +
Sbjct: 553 AKRHS------------------LEQREIE-VSRVLASLNLGDVIAMPGKKRPLLAVV-- 591
Query: 543 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD- 601
+ SN ++ D KP W T W V FP + G
Sbjct: 592 ------VQPSN----NSSDPKP-----------WVTMESGWSGRVDTTAFPMPPVVVGHM 630
Query: 602 -------ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSE 654
A PR+ ++ + +EKL T+S +
Sbjct: 631 KLSRATIAQPRKNSKYVVRQ----FEKL----------------TYSRPKRLKAQQRHRP 670
Query: 655 SDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKA 714
++++ + + + R +AR+ +K+AR + KE ++ TV+ + + +
Sbjct: 671 TEKITELRARIRSHPAHQWDNREDLARIGEKLARAQ--KETSRLRTTVETATDTLGKTFD 728
Query: 715 RSKRLTKRIEQIEPSGWKEFLR-ISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 773
R L ++ + EF+ I V E GE A I E++L +A
Sbjct: 729 RILGLLGELDYV------EFIDGIPQVTEE--------------GENLAKIHNESDLLVA 768
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
L+ I L PA+LA V + E K + ++ + + N + + DE
Sbjct: 769 QCLKRGIWDGLDPAELAGVVSMCTFENRKETRGEPEAATEPMAVAMNNTLRLWDE----- 823
Query: 834 LELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRT 886
L + E+ ++P ++ FS + W +G + A L GD R R+
Sbjct: 824 LSVNERR-YQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAGDFVRQCRQV 882
Query: 887 IDLLAQI 893
IDLL QI
Sbjct: 883 IDLLEQI 889
>gi|440777450|ref|ZP_20956252.1| HelY [Mycobacterium avium subsp. paratuberculosis S5]
gi|436722244|gb|ELP46235.1| HelY [Mycobacterium avium subsp. paratuberculosis S5]
Length = 821
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 224/465 (48%), Gaps = 71/465 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 114 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 173
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D +
Sbjct: 174 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-------- 225
Query: 122 YLQLSTSEVKPYKDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAI 171
P + G R R N R+ AD S+
Sbjct: 226 ---------APGQPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRP 276
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV- 225
R + P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 277 RFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERVQIAEVI 336
Query: 226 -----ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VF
Sbjct: 337 EHRCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVF 392
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
ATETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++
Sbjct: 393 ATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWN 452
Query: 341 PYEGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
P E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 453 PTEETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG 493
Query: 396 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 440
E+A +L+EQSF Y ++ + + Q D + +E+
Sbjct: 494 --PEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELG 536
>gi|395237416|ref|ZP_10415490.1| ATP-dependent RNA helicase HelY [Turicella otitidis ATCC 51513]
gi|423350696|ref|ZP_17328348.1| hypothetical protein HMPREF9719_00643 [Turicella otitidis ATCC
51513]
gi|394487317|emb|CCI83578.1| ATP-dependent RNA helicase HelY [Turicella otitidis ATCC 51513]
gi|404387297|gb|EJZ82418.1| hypothetical protein HMPREF9719_00643 [Turicella otitidis ATCC
51513]
Length = 915
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 193/379 (50%), Gaps = 39/379 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S L + +V+DE+HYL+D SRG VWEE+I+ P+ V ++ LSATV+N++E W
Sbjct: 113 LYASSPALEHLSYVVMDEIHYLADRSRGPVWEEVILNLPESVSVVGLSATVSNSEEFGRW 172
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T++I + RPVPL + T + P+ + N +LS V+
Sbjct: 173 LNAVRGDTDVIVAEDRPVPLNQWMLVGTRVHPMFEPGTTDANGVGG----ELSEELVRAV 228
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
G+ R A G+H ++ + + P+++ L MLP
Sbjct: 229 AKAGASIDGQRSEARYERRG-----GKHNPRRDRARGAKPAGRPEIVRALEQA---SMLP 280
Query: 194 AIWFIFNRRGCDAAV--------------QYLEDCNLLDE--CEMSEVELALKRFRILYP 237
AI+F+F+R GCD A+ + E ++DE + E +L + FR
Sbjct: 281 AIFFVFSRSGCDKALFQCARSRLSLTTKAEAAEIGRIVDEGVAGIDEADLEVLGFR---- 336
Query: 238 DAVREPAIKG-LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
A KG L++G AAHHAG LP ++ +EELF +GLV+VVFATETLA GINMPAR+
Sbjct: 337 ------AWKGALMRGFAAHHAGLLPAFRHIVEELFVKGLVRVVFATETLALGINMPARSV 390
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
VL L K LT E Q+ GRAGRRGID GH V+ +P E L
Sbjct: 391 VLERLVKFNGETHADLTPAEYTQLTGRAGRRGIDEVGHAVVQWSPGLDVEAAAGLASTRT 450
Query: 357 EPLVSQFTASYGMVLNLLA 375
PLVS F Y M +NLL
Sbjct: 451 YPLVSTFQPGYNMSINLLG 469
>gi|227488945|ref|ZP_03919261.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091129|gb|EEI26441.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 884
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 165/500 (33%), Positives = 238/500 (47%), Gaps = 94/500 (18%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVHYLSD RG VWEE+I+ + V I+ LS
Sbjct: 105 IVVMTTEVLRNMIYADSPALARLGYVVMDEVHYLSDRDRGAVWEEVILNLDESVNIVSLS 164
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N++E W+G++ G T++I S RPVPLT Y L PL + +
Sbjct: 165 ATVSNSEEFGQWLGEVRGTTDVIVSEVRPVPLTQYLLVGNQLCPLFNADSTRI------- 217
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+S+VK ++ G+ + + RR + +
Sbjct: 218 -----SSQVK---------------------RAISHQGEQPIGWGQTDRDRRYKPLGRPE 251
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL------------EDC--NLLDEC------E 221
L L MLPAI FIF+R GCD AV +DC ++DE E
Sbjct: 252 VLRLLGGEGMLPAITFIFSRAGCDGAVAQCLGARLDLTTDEDKDCIAQIVDEGVEEIPPE 311
Query: 222 MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
EV L KR+++ +G AAHHAG LP ++ +E+LF +GL+K VFA
Sbjct: 312 DLEV-LGFKRWKL------------ACTRGFAAHHAGMLPAFRHIVEKLFVQGLLKAVFA 358
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPA+T VL L K + LT + Q+ GRAGRRGID +G V+V P
Sbjct: 359 TETLALGINMPAKTVVLERLVKFNGEAHVDLTPGQFTQLTGRAGRRGIDTQGRAVMVWEP 418
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
E L PLVS F+ Y M +NLL + +N A
Sbjct: 419 TMDVEAVAGLASTRTYPLVSTFSPGYNMSVNLL---NTIGYAN----------------A 459
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM- 460
+ ++E+SF Y ++ EL K + + L +++ + AID L Y ++
Sbjct: 460 KHIIERSFAQYQADKSVVGKAHELEKASRAVEQLHTQL-EQAIDGPVDEFLE---YMQLR 515
Query: 461 ANLQE-ELKAEKRFRTELRR 479
A+L + E KA+K F E ++
Sbjct: 516 ADLTDAERKAKKDFVVERKK 535
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 16/198 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL----GETAA 762
E++ R + R L + + K F RI +++ E LD T P G+ A
Sbjct: 667 EQLMREERRRDNLQSAVSSARETLGKTFDRILDLLAE---LDYITPGENPTVTDEGQRLA 723
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
+ E++L +A L+ I +L PA+LA V + V E K + + +T + N
Sbjct: 724 LLHNESDLLIASCLKRGIWDELDPAELAGVVSMTVFENRKEVRGRVGAPTERMATAMNNT 783
Query: 823 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW-----REMMMDCALDDG 877
+ + E S +++H + + + F+ + W +G L G
Sbjct: 784 MRIYTELSSD----EQRHKLALSREPEPGFALAMHQWVAGAPLDYALEAAAASGAELTPG 839
Query: 878 DLARLLRRTIDLLAQIPK 895
D R RR ID+L Q+ K
Sbjct: 840 DFVRSCRRVIDVLEQVAK 857
>gi|227495430|ref|ZP_03925746.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226830977|gb|EEH63360.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 934
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 235/464 (50%), Gaps = 71/464 (15%)
Query: 5 IVVFSCSVG--MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
++V + V M+ L D+ IVLDEVHYL+D RG VWEE+II+ P+ VQI+ LSA
Sbjct: 140 LIVMTTEVARNMIYQGRDLTDLRAIVLDEVHYLADRFRGPVWEEVIIHAPQHVQIVALSA 199
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLN 121
TV+NA+E WI + ++I S +RPVPL + ++ L E + K +N +L
Sbjct: 200 TVSNAEEFGNWIDSVRSGCDIIVSEKRPVPLYQHMMVGRDIIDLYAEDETKFINPQLRTA 259
Query: 122 YLQLSTSEVKPYKD------GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
+ + ++ GG R R+++K R++
Sbjct: 260 ISKQRGITSRNFRQNERHLAGGRRMRDTQKRP------------------------RKTT 295
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL 235
P+V+ +L R +LPAI+FIF+R C+ AV+ + + E K+ R +
Sbjct: 296 RPEVVISLDRAR---LLPAIYFIFSRSACEDAVEQIIGAGITLTSEKER-----KQIRKI 347
Query: 236 YPDAVREPAIKG--------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+A+ A++G L GVAAHHAG LP K +E+LF GLVKVVFA
Sbjct: 348 VDEALY--ALQGEDLSVLRINTWQMALEAGVAAHHAGLLPFMKEVVEKLFTLGLVKVVFA 405
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL +L K ++ L++ E Q+ GRAGRRGID GH ++V
Sbjct: 406 TETLALGINMPARTVVLEALRKWNGIAKVPLSAGEYTQLTGRAGRRGIDVEGHALVVWQD 465
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-----LAGAK-VMH--LSNESDDMK--- 390
E L PLVS F +Y MV NL LA A+ VM + D K
Sbjct: 466 DHEPELVASLASKRTYPLVSAFRPTYNMVANLASTGDLASAREVMDECFAQFQADRKVVG 525
Query: 391 -ALQAGRSLEEARKLVEQSFGNYVGSNV-MLAAKDELCKIQKET 432
A+ A R+ ++ KL S ++G + AA++EL +QK++
Sbjct: 526 LAVDAKRAQQQMDKLAP-SVSCHLGDALEYFAAREELTFLQKQS 568
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 699 VDTVKFTEEKIKRLKARSK--RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 756
VD + ++ ++AR + +L ++E+ S K F +I V+ + L + +
Sbjct: 710 VDRDQHARNAVQWMRARREFEKLASQVEEQTSSVAKRFDKIVLVLEQLGCLHASD--LTD 767
Query: 757 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN--SSIYE 814
G T AI GE +L +A+ L I DL AQLA+V ++ V E K +
Sbjct: 768 AGHTLRAIYGERDLVVALSLEAGIWDDLDEAQLASVVSACVFEPRKDHAPDPEIPEGAHG 827
Query: 815 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 872
P +N +LD +R+ + H L++ + W G + +
Sbjct: 828 PVGQALNATARIMLDINRA-----ESAHQATTSMPLETGLVNAMYWWVKGDSLASAVSSA 882
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS 920
L+ GD R ++TIDLL QI + + L A DA++ + R +S
Sbjct: 883 DLEAGDWVRWCKQTIDLLMQI-SVATRNSNLAWTARDAADAIRRSVVS 929
>gi|417746444|ref|ZP_12394945.1| superfamily II RNA helicase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336462033|gb|EGO40881.1| superfamily II RNA helicase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 823
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 224/465 (48%), Gaps = 71/465 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 116 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 175
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + L L D +
Sbjct: 176 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-------- 227
Query: 122 YLQLSTSEVKPYKDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAI 171
P + G R R N R+ AD S+
Sbjct: 228 ---------APGQPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRP 278
Query: 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV- 225
R + P D + L + +LPAI F+F+R GCDAAVQ L+ + +++EV
Sbjct: 279 RFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERVQIAEVI 338
Query: 226 -----ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VF
Sbjct: 339 EHRCGDLADADLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVF 394
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
ATETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++
Sbjct: 395 ATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWN 454
Query: 341 PYEGAEECCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
P E E + AG+ PL S F SY M +NL+ Q G
Sbjct: 455 PTEETTEPSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG 495
Query: 396 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 440
E+A +L+EQSF Y ++ + + Q D + +E+
Sbjct: 496 --PEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELG 538
>gi|317508594|ref|ZP_07966255.1| DEAD/DEAH box helicase, partial [Segniliparus rugosus ATCC BAA-974]
gi|316253138|gb|EFV12547.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 606
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 236/488 (48%), Gaps = 59/488 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I+ P+EV ++ LSATV NA+E W+ + G TE++
Sbjct: 141 VVMDEVHYLADQFRGAVWEEVILNLPREVVVVSLSATVGNAEEFGEWLQAVRGDTEVVVE 200
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RRP+PL+ + + L E +H R + LS +E RR
Sbjct: 201 ERRPIPLSQHVLVGDRMFDLEPEDPRHGERG---SDGALSKAE---------RRLRHELE 248
Query: 147 ADMNSNNIVTSF-------GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
A + + SF G+ ++ A R+ +P+ + L +LPAIWFIF
Sbjct: 249 AHIKQQEALASFEDPRRGRGRGGPPRDRRRAQGRTLLPRT-RVISKLEEERLLPAIWFIF 307
Query: 200 NRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI------KGLLKGV 252
+R GCD AV Q L L E S AL R D+ + L +G+
Sbjct: 308 SRAGCDDAVAQCLRSPLRLISPEQSAEVRALIEERTAQLDSADLQVLGYDTWKSALERGI 367
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
AAHHAG +W+ +EELF +G+V+VVFATETLA G+NMPAR+ VL SL K + L
Sbjct: 368 AAHHAGMFTLWRHIVEELFVKGMVRVVFATETLALGVNMPARSVVLESLVKFNGESHVDL 427
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
T E Q+ GRAGRRGID RGH VL P A +L + PL S F SY M +N
Sbjct: 428 TPGEYTQLTGRAGRRGIDTRGHAVLRWKPGVRAASMLRLTDSRTYPLRSSFRPSYNMSVN 487
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
L+ D A RS L+ QSF + + +A L + ++E
Sbjct: 488 LI-------------DRIGPAASRS------LLAQSFAQFQTDRSVSSAAVVLARREQE- 527
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK-RFSALKD 491
++R+++RL A+ + A++ + L + R+ R K + +++ D
Sbjct: 528 -----------LERETKRLDIAASPQSAADVLDYLANKAELRSGPARAQHRKGKAASVGD 576
Query: 492 ILKDFENG 499
L+ G
Sbjct: 577 GLRALRRG 584
>gi|403527393|ref|YP_006662280.1| helicase HelY [Arthrobacter sp. Rue61a]
gi|403229820|gb|AFR29242.1| putative helicase HelY [Arthrobacter sp. Rue61a]
Length = 991
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 222/473 (46%), Gaps = 97/473 (20%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LS
Sbjct: 125 VVVMTTEVLRNMLYADSETLGDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLS 184
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL------DEKGKHMN 115
ATV+NA+E W+ + G T++I S RPVPL + ++ L DE
Sbjct: 185 ATVSNAEEFGAWLDTVRGDTDVIVSEHRPVPLWQHVMVGREIVDLFAGDTTFDEIAPQAP 244
Query: 116 RKLSLNYLQLSTS-EVKPYKDGGSRRRNSRKHADMNS----------------------- 151
LS + EV RRR + K N+
Sbjct: 245 GARETEVPDLSEADEVLTEPAPTDRRRPAAKRMSANTVRQAVTGPEFEVNPDLLAMARSE 304
Query: 152 --NNIVTSFGQ--------------HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
N+ FG Q S+ + +R++ PQVI++L R +D+LPAI
Sbjct: 305 SRMNMNGRFGHGGRSRRRQDRYRDERQQSEQR-SPVRKASRPQVIESL---RRQDLLPAI 360
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA------ 244
FIF+R GCDAAV +C S + L +R + + V E PA
Sbjct: 361 TFIFSRAGCDAAVA---------QCAASGLWLTTEREQQIIAQRVDEASHEIPADDLDVL 411
Query: 245 -----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
GL++G AAHHAG LP +K +E+LF GLVK VFATETLA G+NMPAR VL
Sbjct: 412 GFWGWRDGLVRGFAAHHAGMLPTFKEVVEKLFADGLVKAVFATETLALGVNMPARCVVLE 471
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
L K + +T+ E Q+ GRAGRRGID GH V++ P L PL
Sbjct: 472 KLEKFNGEAHVNITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPAAVAGLASRRTYPL 531
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F +Y M +NL+A Q GR AR+++E SF +
Sbjct: 532 NSSFRPTYNMSINLIA-----------------QFGRV--RAREILESSFAQF 565
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 24/243 (9%)
Query: 674 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 733
+Q K+A L++ + R + D +++E K L+ + L ++I+ + K
Sbjct: 742 DQEKKIADLRRAL-RAHPCHGCSEREDHARWSERWWK-LRRETDGLVRQIQGRTNTIAKT 799
Query: 734 FLRISNVIHETRAL---DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
F R+ +V+ L D I G+ I GE +L ++ +R + DL A+LA
Sbjct: 800 FDRVCDVLSVYGYLETSDAGHVTISTDGQRLRRIYGEKDLLISQTVRRGAINDLDAAELA 859
Query: 791 AVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 844
+ ++LV + G++ ++ PS ++ + I+++ S + +E++ +
Sbjct: 860 SFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIREWSQLEDTEERN--RL 908
Query: 845 PCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
P + + M + WA G ++++ L GD R ++ +DLL Q+ K+P +D R
Sbjct: 909 PLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQVVDLLDQLAKIPQLDPR 968
Query: 903 LQK 905
L +
Sbjct: 969 LAR 971
>gi|392375262|ref|YP_003207095.1| helicase [Candidatus Methylomirabilis oxyfera]
gi|258592955|emb|CBE69264.1| putative helicase [Candidatus Methylomirabilis oxyfera]
Length = 839
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 201/393 (51%), Gaps = 52/393 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDE HY+ ++ RGTVWEEIII CP EVQ++ LSATV+N E+A WIGQ H I
Sbjct: 156 VVLDECHYMGNVGRGTVWEEIIINCPPEVQLVALSATVSNIREIAEWIGQTHRPIRPIHH 215
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L D +G ++ P + RR
Sbjct: 216 PVRPVPLQYL---------LCDREG-----------------QLWPPEPASVRRILHAFF 249
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+D + + + + + RR + + I + LR+R LPAI+FIF+R GC+
Sbjct: 250 SDRSVSEGREAGRWERRREGRHRPFRRRALDESI-AIAALRARRWLPAIYFIFSRSGCER 308
Query: 207 AVQYLEDCN--LLDECEMSEVELALKRFRILYPDAVREP-----AIKGLLKGVAAHHAGC 259
A+ L + LLD EVE +++ + YP E + GL +G HHAG
Sbjct: 309 ALARLLERGEPLLDPARGEEVEETIQQTLLDYPSISLESDLNRLILSGLRRGAGLHHAGV 368
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP K E LF+RGLV+VVFATET++ GI+MPA++ V+ L KR+ G LT ELFQ
Sbjct: 369 LPALKRLTELLFERGLVQVVFATETMSLGIHMPAKSVVIGGLRKRSDLGFRGLTVGELFQ 428
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRGID G ++ EG E+ +L+ EP+ S+F Y + A +
Sbjct: 429 MAGRAGRRGIDPEGTCLMALDSAEGVEDAVRLVRGDPEPIDSRFRIGYS------SAALL 482
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ + E E RK +E+SFG +
Sbjct: 483 IEMQREP------------EAIRKTIEKSFGQF 503
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 118/253 (46%), Gaps = 17/253 (6%)
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
NY+E R+K+ + +++ + ++ + + + + RL +R + +Q++ S
Sbjct: 588 NYEESRSKLDAMALALSQMPCHRCAERSLRERQLKQSR--RLGQMLERHHQTQQQLQNSY 645
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
W++FLR+ ++ +D + G A++R +NEL +A V + +L L P +LA
Sbjct: 646 WEQFLRVVGILQYFGYVDDGR--LGAEGRLIASLRHDNELLVARVAFSGLLQGLVPEELA 703
Query: 791 AVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIP 845
+ + LV +E +L+ + + + + L+E ++Q + VE+P
Sbjct: 704 GLLSCLVEEPRATEQAAAKLFLRDQA------HLRRRVKTLEELSQEVDKVQRSYQVELP 757
Query: 846 CCLDSQFSGMVEAWASGLT-WREMM-MDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 903
+ + + W SG W ++ +GDL R RR IDL Q+ + P++ L
Sbjct: 758 VSMHTTYLAATHRWVSGEDDWLALVEQSFGGHEGDLIRAFRRLIDLCRQLEESPELPADL 817
Query: 904 QKNAVDASNVMDR 916
+ A+ ++DR
Sbjct: 818 TRTLSRATEMLDR 830
>gi|377567972|ref|ZP_09797172.1| putative helicase [Gordonia terrae NBRC 100016]
gi|377534813|dbj|GAB42337.1| putative helicase [Gordonia terrae NBRC 100016]
Length = 935
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 228/460 (49%), Gaps = 56/460 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 VVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + L L D
Sbjct: 161 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRLFDLFD------------- 207
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI- 180
++ P + G+R R + + + I+ + + + ++ +
Sbjct: 208 -----PADTGPARKAGTRPRVNPELKRQIRHRILMADDERESARGRGRGRGSGPRRRGRG 262
Query: 181 ------DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF 232
+ + L +LPAI FIF+R GCDAA+ Q L +LL E+ EV+ + R
Sbjct: 263 PALSRPNLVTRLDREALLPAIGFIFSRAGCDAALAQCLRSGLSLLTPAEIGEVDAIVDRH 322
Query: 233 RI-LYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
L P + + +GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA
Sbjct: 323 LTELSPTDLDVLGVHEWREGLRRGLASHHAGMLPTFRHTVEELFVRGLVRMVFATETLAL 382
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
GINMPAR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE
Sbjct: 383 GINMPARSVVLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEE 442
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVE 406
L A PL S F+ Y M +NLL GR L+ AR+L+
Sbjct: 443 VAGLAGARTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLH 482
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR 446
+SF + ++ +L + Q+ L E++ A R
Sbjct: 483 RSFAQFQADRSVVGQARKLDEAQRALRKLDGELARAAQAR 522
>gi|333028223|ref|ZP_08456287.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
gi|332748075|gb|EGJ78516.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
Length = 935
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 204/407 (50%), Gaps = 47/407 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSPALTGLGYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE++ S RPVPL + + L +E G R ++ + L+++ E
Sbjct: 194 LDTVRGDTEVVVSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRT 252
Query: 134 KDGGSRRRNSRKHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
GG RR T + G+ P+VID L S +L
Sbjct: 253 GYGGKRRGREADRERERRQRSRTWTPGR----------------PEVID---RLDSEGLL 293
Query: 193 PAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----I 245
PAI FIF+R C+AAVQ L DE E V E+ +R + P+ + +
Sbjct: 294 PAITFIFSRAACEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFL 353
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 354 EGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWN 413
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 414 GEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRP 473
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL+ Q GR +R+L+E SF +
Sbjct: 474 SYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 501
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 716 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 772
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 773 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 829
Query: 826 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 830 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 889
Query: 881 RLLRRTIDLLAQI 893
R ++ ID+L QI
Sbjct: 890 RWTKQIIDVLGQI 902
>gi|227542061|ref|ZP_03972110.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227182112|gb|EEI63084.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 884
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 163/497 (32%), Positives = 236/497 (47%), Gaps = 94/497 (18%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVHYLSD RG VWEE+I+ + V I+ LS
Sbjct: 105 IVVMTTEVLRNMIYADSPALARLGYVVMDEVHYLSDRDRGAVWEEVILNLDESVNIVSLS 164
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N++E W+G++ G T++I S RPVPLT Y L PL + +
Sbjct: 165 ATVSNSEEFGQWLGEVRGTTDVIVSEVRPVPLTQYLLVGNQLCPLFNADSTRI------- 217
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+S+VK ++ G+ + + RR + +
Sbjct: 218 -----SSQVK---------------------RAISHQGEQPIGWGQTDRDRRYKPLGRPE 251
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL------------EDC--NLLDECEMSEVE- 226
L L MLPAI FIF+R GCD AV +DC ++DE + E+
Sbjct: 252 VLRLLGGEGMLPAITFIFSRAGCDGAVAQCLGARLDLTTDEDKDCIAQIVDEG-VEEIPP 310
Query: 227 -----LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
L KR+++ +G AAHHAG LP ++ +E+LF +GL+K VFA
Sbjct: 311 EDLDVLGFKRWKL------------ACTRGFAAHHAGMLPAFRHIVEKLFVQGLLKAVFA 358
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPA+T VL L K + LT + Q+ GRAGRRGID +G V+V P
Sbjct: 359 TETLALGINMPAKTVVLERLVKFNGEAHVDLTPGQFTQLTGRAGRRGIDTQGRAVMVWEP 418
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
E L PLVS F+ Y M +NLL + +N A
Sbjct: 419 TMDVEAVAGLASTRTYPLVSTFSPGYNMSVNLL---NTIGYAN----------------A 459
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM- 460
+ ++E+SF Y ++ EL K + + L +++ + AID L Y ++
Sbjct: 460 KHIIERSFAQYQADKSVVGKAHELEKASRAVEQLHTQL-EQAIDGPVDEFLE---YMQLR 515
Query: 461 ANLQE-ELKAEKRFRTE 476
A+L + E KA+K F E
Sbjct: 516 ADLTDAERKAKKDFVVE 532
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 16/198 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL----GETAA 762
E++ R + R L + + K F RI +++ E LD T P G+ A
Sbjct: 667 EQLMREERRRDNLQSAVSSARETLGKTFDRILDLLAE---LDYITPGENPTVTDEGQRLA 723
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
+ E++L +A L+ I +L PA+LA V + V E K + + +T + N
Sbjct: 724 LLHNESDLLIASCLKRGIWDELDPAELAGVVSMTVFENRKEVRGRVGAPTERMATAMNNT 783
Query: 823 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW-----REMMMDCALDDG 877
+ + E S +++H + + + F+ + W +G L G
Sbjct: 784 MRIYTELSSD----EQRHKLALSREPEPGFALAMHQWVAGAPLDYALEAAAASGAELTPG 839
Query: 878 DLARLLRRTIDLLAQIPK 895
D R RR ID+L Q+ K
Sbjct: 840 DFVRSCRRVIDVLEQVAK 857
>gi|119963790|ref|YP_947928.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950649|gb|ABM09560.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 991
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 220/472 (46%), Gaps = 95/472 (20%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LS
Sbjct: 125 VVVMTTEVLRNMLYADSETLGDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLS 184
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL------DEKGKHMN 115
ATV+NA+E W+ + G T++I S RPVPL + ++ L DE
Sbjct: 185 ATVSNAEEFGAWLDTVRGDTDVIVSEHRPVPLWQHVMVGREIVDLFAGDTTFDEIAPQAP 244
Query: 116 RKLSLNYLQLSTS-EVKPYKDGGSRRRNSRKHADMNS----------------------- 151
LS + EV RRR + K N+
Sbjct: 245 GARETEVPDLSEADEVLTEPAPTDRRRPAAKRMSANTVRQAVTGPEFEVNPDLLAMARSE 304
Query: 152 --NNIVTSFGQ-------------HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
N+ FG + + +R++ PQVI++L R +D+LPAI
Sbjct: 305 SRMNMNGRFGHGGRSRRRQDRYRDDRQQSEQRSPVRKASRPQVIESL---RRQDLLPAIT 361
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA------- 244
FIF+R GCDAAV +C S + L +R + + V E PA
Sbjct: 362 FIFSRAGCDAAVA---------QCAASGLWLTTEREQQIIAQRVDEASHEIPADDLDVLG 412
Query: 245 ----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
GL++G AAHHAG LP +K +E+LF GLVK VFATETLA G+NMPAR VL
Sbjct: 413 FWGWRDGLVRGFAAHHAGMLPTFKEVVEKLFADGLVKAVFATETLALGVNMPARCVVLEK 472
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K + +T+ E Q+ GRAGRRGID GH V++ P L PL
Sbjct: 473 LEKFNGEAHVNITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPAAVAGLASRRTYPLN 532
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F +Y M +NL+A Q GR AR+++E SF +
Sbjct: 533 SSFRPTYNMSINLIA-----------------QFGRV--RAREILESSFAQF 565
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 24/243 (9%)
Query: 674 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 733
+Q K+A L++ + R + D +++E K L+ + L ++I+ + K
Sbjct: 742 DQEKKIADLRRAL-RAHPCHGCSEREDHARWSERWWK-LRRETDGLVRQIQGRTNTIAKT 799
Query: 734 FLRISNVIHETRAL---DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
F R+ +V+ L D I G+ I GE +L ++ +R + DL A+LA
Sbjct: 800 FDRVCDVLSVYGYLETSDAGHVTISTDGQRLRRIYGEKDLLISQTVRRGAINDLDAAELA 859
Query: 791 AVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 844
+ ++LV + G++ ++ PS ++ + I+++ S + +E++ +
Sbjct: 860 SFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIREWSQLEDTEERN--RL 908
Query: 845 PCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 902
P + + M + WA G ++++ L GD R ++ +DLL Q+ K+P +D R
Sbjct: 909 PLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQVVDLLDQLAKIPQLDPR 968
Query: 903 LQK 905
L +
Sbjct: 969 LAR 971
>gi|296129718|ref|YP_003636968.1| DSH domain-containing protein [Cellulomonas flavigena DSM 20109]
gi|296021533|gb|ADG74769.1| DSH domain protein [Cellulomonas flavigena DSM 20109]
Length = 952
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 212/414 (51%), Gaps = 57/414 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+II+ P +VQ++ LSATV+NA+E W
Sbjct: 153 LYAGSSALDGLGYVVMDEVHYLADRFRGPVWEEVIIHLPDDVQLVSLSATVSNAEEFGDW 212
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPL----LDEKGKHMNRKLSLNYLQLSTSE 129
+ + G T ++ S RPVPL + LL L +D ++ ++ + L
Sbjct: 213 LATVRGDTTVVVSEHRPVPLGQHVLVGDQLLDLYAGHVDPTDPGVDPPINPDLTHLLRG- 271
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
+ GG R D + + + + R + +D L R
Sbjct: 272 ----RTGGDR--------DRRAPRGRPGRARDHRPAGGVRPVPRFVM---VDELAEAR-- 314
Query: 190 DMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVE-LALKRFRILYPDAVR----E 242
+LPAI FIF+R GC+AAVQ L E +++ +A +R + P+ + +
Sbjct: 315 -LLPAIVFIFSRVGCEAAVQQCLSAGVRLTTPAERADIRRVAEERCAAIPPEDLEVLGYD 373
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++GL++GVAAHHAG LP++K +E+LF RG VKVVFATETLA GINMPAR VL L
Sbjct: 374 AFVEGLVRGVAAHHAGMLPLFKETVEDLFSRGWVKVVFATETLALGINMPARCVVLEKLV 433
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEP 358
K S + +T E Q+ GRAGRRGID GH V+V P + A + L+ P
Sbjct: 434 KWDGSAHVDVTPGEYTQLTGRAGRRGIDTEGHAVVVAHGALDPVQLAGLASRRLY----P 489
Query: 359 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
L S F +Y M +NL+A Q GR E AR ++E SF +
Sbjct: 490 LRSSFRPTYNMAVNLVA-----------------QVGR--ERARDVLETSFAQF 524
>gi|296393806|ref|YP_003658690.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296180953|gb|ADG97859.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 927
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 219/467 (46%), Gaps = 61/467 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG VWEE+I+ P+EV ++ LS
Sbjct: 104 VVVMTTEVLRNMIYAHSPTLDGLSHVVMDEVHYLADQFRGAVWEEVILNLPREVVVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALL----PLLDEKGKHMNRK 117
ATV NA+E W+ Q+ G TE++ RRPVPL+ + + P E+ + ++
Sbjct: 164 ATVGNAEEFGEWLQQVRGDTEVVVEERRPVPLSQHVLVGERMFDLEPPPAGEEAQAARQQ 223
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
+ S+ + RR A + + SF + + RR P
Sbjct: 224 HGERSADGALSKAE-------RRLRHELEAHIKQQEALASF-------DDPRSPRRRSGP 269
Query: 178 QV--------------IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEM 222
Q + L +LPAIWFIF+R GCD AV Q L L E
Sbjct: 270 QRAGRRGGPGRVLLPRAKVIGKLEDERLLPAIWFIFSRAGCDDAVAQCLRSPLRLISPEQ 329
Query: 223 SEVELALKRFRILYPDAVREPAI------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 276
S AL R D+ + L +GVAAHHAG +W+ +EELF +G+V
Sbjct: 330 SAQVRALIEERTAQLDSADLKVLGYDTWKAALERGVAAHHAGMFTLWRHIVEELFAKGMV 389
Query: 277 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336
+VVFATETLA G+NMPAR+ VL SL K + LT E Q+ GRAGRRGID RGH V
Sbjct: 390 RVVFATETLALGVNMPARSVVLESLVKFNGESHVDLTPGEYTQLTGRAGRRGIDTRGHAV 449
Query: 337 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR 396
L P A +L + PL S F SY M +NL+ D A R
Sbjct: 450 LRWKPGVRAATMLRLTDSRTYPLRSSFRPSYNMSVNLI-------------DRIGPAASR 496
Query: 397 SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 443
S L+ QSF + + +A L K ++E TS + A
Sbjct: 497 S------LLAQSFAQFQTDRSVSSAAAVLSKREQELARETSRLDTAA 537
>gi|453382310|dbj|GAC83193.1| putative helicase [Gordonia paraffinivorans NBRC 108238]
Length = 931
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 220/428 (51%), Gaps = 52/428 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 VVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + L L D + R+
Sbjct: 161 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGNRLFDLFDPADRAPERRTG-- 218
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQV 179
+ V P R R D + G +H+ + ++ + R + V
Sbjct: 219 ----ARPRVNPDLKRQIRHRILLAEDDREARGRGRRSGAPRHRGGRGAV--LSRPHMVGV 272
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVELALKRF-- 232
+D +LPAI FIF+R GCDAA L C +LL E + V+ + R
Sbjct: 273 LD------REGLLPAIDFIFSRAGCDAA---LSQCLRSGLSLLAPEEAAAVDEVVDRHLS 323
Query: 233 -------RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+L D RE GL +G+AAHHAG LP+++ +EELF +GLVK+VFATETL
Sbjct: 324 DLSPGDADVLGVDEWRE----GLRRGLAAHHAGLLPMFRHAVEELFVKGLVKMVFATETL 379
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPAR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP
Sbjct: 380 ALGINMPARSVVLQRLVKYNGESHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWTPEVVP 439
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNL-----LAGAK-VMHLSNESDDMKALQAGRS-L 398
EE L A PL S F+ Y M +NL L GA+ ++H S QA RS +
Sbjct: 440 EEVAGLAGARTFPLRSSFSPEYNMAVNLLDRLGLDGARELLHRS-----FAQFQADRSVV 494
Query: 399 EEARKLVE 406
+ARKL E
Sbjct: 495 GQARKLHE 502
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 804
+T + G + I E++L + +R + +L P+ LAAV A+LV E + +
Sbjct: 754 HTMRVTDAGRVLSRIYSESDLVVTECIRAGVWEELSPSDLAAVVAALVFESRRDSYGGID 813
Query: 805 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 864
+ S+ +++ N ++ +H V D+ FS V WASG +
Sbjct: 814 TMPGSRSLRVALGATVDIWN-------RVTAVEARHRVTPTREPDTGFSLAVATWASGRS 866
Query: 865 WREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
E ++ L GD R R+ IDLL QI D RL A A + R
Sbjct: 867 LTEALVLAGERGQLLSPGDFVRWNRQVIDLLEQIRLCVGTDTRLGGTARAAVKAIRR 923
>gi|448823701|ref|YP_007416866.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|448277198|gb|AGE36622.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 911
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 216/429 (50%), Gaps = 71/429 (16%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE I+ V ++ LS
Sbjct: 113 IVVMTTEVLRNMIYADSDRLASLTHVVMDEVHFLADRWRGPVWEETILNLDHSVTLVSLS 172
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N +E GW+ + G+ ++I + +RPVPLT Y + ++ L + +H+
Sbjct: 173 ATVSNVEEFGGWLRTLRGEMDVIVTDKRPVPLTQYMMVGSKIMRLFSKNAEHLA------ 226
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
H + +++T+ G+ + N + P+ D
Sbjct: 227 ---------------------GEDHPGAINRSLLTAVGKAEAYGNQ-------RGPRRED 258
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD-AV 240
+ HL MLPAI+FIF+R GCD AVQ L L+ + E++ + A + I+ A
Sbjct: 259 VVRHLEQAKMLPAIYFIFSRIGCDKAVQQL----LIRKVELTTPDEAREIGEIIDEGVAG 314
Query: 241 REPA----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
EPA + L++G AHHAG LP ++ +E+LF+RGL+KV FATETLA GIN
Sbjct: 315 LEPADLHMLGFRQWRRALMRGFGAHHAGMLPAFRHIVEKLFRRGLLKVCFATETLALGIN 374
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL ++K +LT + Q+ GRAGRRGID G+ V++ +P
Sbjct: 375 MPARTVVLEKMTKFNGEAHAELTPGQYTQLTGRAGRRGIDTVGNAVVLWSPQVDPYAVAA 434
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L A PL S F Y M +NL+ A + EA +++E+SF
Sbjct: 435 LASARTYPLDSTFRPGYNMAVNLI-------------------ATKGWAEAHRILERSFA 475
Query: 411 NYVGSNVML 419
Y ++ ++
Sbjct: 476 QYQANDTIV 484
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 814
GE A I E++L +A LR + DL PA+LAA ++ V E + VR ++ E
Sbjct: 746 GEKLARIHHESDLLVAQCLRRGLWDDLDPAELAAAVSACVFENRRESTVRTQLPTDALEE 805
Query: 815 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 870
+ V V DE R +E F+ V W +G +
Sbjct: 806 AVAHTLRVYKELVSDEERHRLTATREPQ---------LGFATAVHQWVAGAPLEYCLQAA 856
Query: 871 ---DCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R DLL QI K+ ++K+A A + M R
Sbjct: 857 EASGAVLTPGDFVRACGRVKDLLDQI-KMTGYSNDVRKSARKAVDAMQR 904
>gi|373252718|ref|ZP_09540836.1| superfamily II RNA helicase [Nesterenkonia sp. F]
Length = 990
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 172/513 (33%), Positives = 242/513 (47%), Gaps = 70/513 (13%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V + + L D+ +V+DEVHYL+D RG VWEE+II+ P+ VQ++ L
Sbjct: 118 QIVVMTTEVLRNMLYTDAEPLRDLGYVVMDEVHYLADRFRGAVWEEVIIHLPESVQVVAL 177
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL----DEKGKHMNR 116
SATV+NA+E W+ + G+T ++ S RPVPL + + L DE
Sbjct: 178 SATVSNAEEFGAWLDTVRGETAVVVSEHRPVPLWQHMYVDGQIHDLFVTDGDEDDAVSAA 237
Query: 117 KLSLNYLQLSTSEVKPY--KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
++ + +L+ + P + G + + + G S R
Sbjct: 238 LVNPDLQRLAHQQQSPASRRGGPHAKGGKGGRGRGAGSRPRGAGGSVSGVSGSPVGGSRL 297
Query: 175 QVPQVIDTLWHLRSRD-MLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEV--- 225
P++I L RD +LP I FIF+R GC+AAV E C L E E+
Sbjct: 298 NRPRLIRAL----DRDGLLPCITFIFSRAGCEAAV---EQCLTGGIRLTTPAEAEEITSR 350
Query: 226 ------ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 279
EL + +L D+ RE L+ GVAAHHAG LP +K +E+LF GL+KVV
Sbjct: 351 VERMGWELPAEDLAVLGFDSFRE----ALVHGVAAHHAGMLPPFKELVEDLFAEGLLKVV 406
Query: 280 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339
FATETLA GINMPART VL L K + +T E Q+ GRAGRRGID GH V+V
Sbjct: 407 FATETLALGINMPARTVVLEKLDKFNGEQHVDITPGEFTQLTGRAGRRGIDVEGHAVVVH 466
Query: 340 TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLE 399
P + L PL S F SY M +NL A Q GR E
Sbjct: 467 QPGMDPRQVGGLASKRTYPLNSSFRPSYNMAVNLTA-----------------QFGR--E 507
Query: 400 EARKLVEQSFGNYVGSNVMLAAKDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEA 455
AR ++E SF + ++ ++ + +Q + + + D A + RR +SE
Sbjct: 508 RARTILESSFAQFQADRSVVGLARDVSQRESSLQGYHEAMQCHLGDFAEYAQLRRRISEL 567
Query: 456 AYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
E+ +A+ R R +RR EL R A
Sbjct: 568 ---------EKGQAKARNR---QRRRELTRVLA 588
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G+ I GE +L+ ++ +L L A+LAA L+ + + + P+
Sbjct: 799 GQRLRRIYGERDLFTELLQHRGVLRGLDAAELAAFSTVLI---YQAKRDDEGAMPMMPTV 855
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
+ + + + L+++H V+ + + + AWASG + RE +MD L G
Sbjct: 856 RLGEAVRAAVDVHADLEALEKQHHVDPTPAPEMGLAPPMHAWASGRSLREALMDSPLAAG 915
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
D R +++ID+L Q+ + P +L +A ++ R
Sbjct: 916 DFVRWAKQSIDVLDQLGRAPHTAAKLAARCQEAVELIGR 954
>gi|397670670|ref|YP_006512205.1| DSHCT domain protein [Propionibacterium propionicum F0230a]
gi|395143370|gb|AFN47477.1| DSHCT domain protein [Propionibacterium propionicum F0230a]
Length = 914
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 154/417 (36%), Positives = 214/417 (51%), Gaps = 49/417 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S +GL ++ +V+DEVHYL+D RG VWEE+I+ VQI LSATV+N ++ W
Sbjct: 114 IYASSTGLNNLGHVVMDEVHYLADRFRGAVWEEVILGLTPRVQITALSATVSNVEDFGDW 173
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKLSLNY 122
+ + G E++ S RRPVPL T L+ L + E+G +NR+L
Sbjct: 174 LRTVRGSFEVVVSERRPVPLYQQVLVGTKLVDLFEGVAPTARELPGERGAKVNREL---- 229
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
L++S +E +D R R + SFG + + + R++V +V++
Sbjct: 230 LKVSRAEATRVRDDSRRPRGRSGRGKRPRGS--GSFGGDVHPRFAGHRTSRTEVARVLE- 286
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELA---LKRFRILY 236
R+R +LPAIWFIF+R GCDAAV+ L NL E + + E+A + +
Sbjct: 287 ----RAR-LLPAIWFIFSRAGCDAAVEQLLTAGVNLTTRAEAALLGEIADRHVSGLSVTD 341
Query: 237 PDAVREPAIKG-LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
DA+ +G L G+AAHHAG LP +K+ +EE F G K+VFATETLA GINMPART
Sbjct: 342 LDALGYEDFRGALCAGIAAHHAGQLPAFKAIVEEGFATGACKLVFATETLALGINMPART 401
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
VL L K + +T E Q+ GRAGRRGID GH V+ P L
Sbjct: 402 VVLEKLVKYNGEAVVDITPGEYTQLTGRAGRRGIDVEGHAVVQWQPGMDPRAVAGLASRR 461
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL A GR E AR+++ QSF +
Sbjct: 462 TYPLRSSFAPSYNMAVNLTA-----------------SLGR--ERAREVLNQSFAQF 499
>gi|379736063|ref|YP_005329569.1| putative helicase helY [Blastococcus saxobsidens DD2]
gi|378783870|emb|CCG03538.1| putative helicase helY [Blastococcus saxobsidens DD2]
Length = 944
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 163/500 (32%), Positives = 236/500 (47%), Gaps = 68/500 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES L + +V+DEVHYL+D RG VWEE+II+ P V +I LS
Sbjct: 117 VVVMTTEVLRNMLYAESPALRGLGYVVMDEVHYLADRFRGAVWEEVIIHLPPSVTLISLS 176
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E A W+ + G T ++ S RP+PL + + L + + +
Sbjct: 177 ATVSNAEEFADWLVTVRGDTSVVVSEVRPIPLWQHMLVGNRVFDLFSLRPAAHAAEQGDS 236
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS------- 174
LST E + A + +V +H+ +S RR
Sbjct: 237 PRPLSTRE---------------RGASVVDPELVRYVREHERRIDSWGGDRRRDSGHRPR 281
Query: 175 -QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKR 231
+ P D + L +LPAI F+F+R GCDAAV L L DE E +E+ +
Sbjct: 282 YRPPARSDVVERLDRAGLLPAITFVFSRNGCDAAVHQCLLSGLRLTDEVERAEIAAIIDE 341
Query: 232 FRILYPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
P+ RE GLL G+AAHHAG +P +K +EE F RGLVK VFAT
Sbjct: 342 RTGSLPEEDLHVLGFWEWRE----GLLAGLAAHHAGLVPAFKETVEECFVRGLVKAVFAT 397
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART VL L K + +T E Q+ GRAGRRGID GH V++ P
Sbjct: 398 ETLALGINMPARTVVLERLVKWNGEAHVDVTPGEYTQLTGRAGRRGIDVEGHAVVIWAPG 457
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 402
L PL S F SY M +NL++ GR+ AR
Sbjct: 458 MDPSVVAGLASTRTYPLKSSFRPSYNMAVNLVS-----------------SFGRA--RAR 498
Query: 403 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 462
+L+ SF + ++ + +++ +E+ D D + L +++A+
Sbjct: 499 ELLASSFAQFQADRSVVGLARAAARHERDAAQSAAEMRSDRGDVGAYAQLR----RQIAD 554
Query: 463 LQEELKAEKRFRTELRRRME 482
++EL + ++ +RRME
Sbjct: 555 REKELSRD----SQAKRRME 570
Score = 40.4 bits (93), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G A I E++L +A LR + L P +LAAV ++LV E + P+
Sbjct: 778 GRRLARIWSESDLLVAECLRAGVWRGLTPPELAAVVSTLVFEARR----DTPGLPAVPAG 833
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASG 862
TV I + R+ L+++ HGV LD F+ WA G
Sbjct: 834 TVAAAIGEMRGIRARLLDVELDHGVPPSRDLDLGFAWAAYRWADG 878
>gi|304389475|ref|ZP_07371438.1| helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304327285|gb|EFL94520.1| helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 816
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 218/433 (50%), Gaps = 73/433 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ + + L D+ +V+DEVHYLSD RG VWEEIII+ V++ICLSA
Sbjct: 144 IIVMTTEVLRNMIYAAAPLADLGYVVMDEVHYLSDHFRGPVWEEIIIHLDAAVRLICLSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STKTALLPLL--DEKGKHMNRKLS 119
T++NA+ A W+ + G T +I++S RPVPL + S +LPL E G H+NR L
Sbjct: 204 TISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISASGEVLPLFAKGEVGGHLNRAL- 262
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L + +V P + RR + + A+ RS
Sbjct: 263 ---LAQAAQQVMPRRGRMPRRIRADR-----------------------PAVARS----- 291
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-------LDECEMSEVELALKRF 232
L +D+LPAI FIF+R+GC+ A + D L D+ + EVE L F
Sbjct: 292 ------LEQQDLLPAIVFIFSRQGCNDAAAQVFDAGLRFTTTEEADQIRL-EVETTLAGF 344
Query: 233 RILYPDAVREPA-IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
A+ + L G+A HHAG LPI K E LF +GL+++VFATETLA GINM
Sbjct: 345 SQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESLFAKGLIRLVFATETLALGINM 404
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL SL+K R LT E Q+ GRAGRRGID+ GH + + + L
Sbjct: 405 PARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGIDSVGHALTLMEVKNPPQLLANL 464
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F ++ M +NLLA +LE A++ VE+SF
Sbjct: 465 ASQQTYPLHSAFVPTFNMAVNLLART-------------------TLEGAKETVEKSFAQ 505
Query: 412 YV--GSNVMLAAK 422
YV GS+ L A+
Sbjct: 506 YVALGSSRKLFAQ 518
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 716 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 774
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 775 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
LR + DL A LA +VC + G RL E S ++ + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASASLAIALESMGRINF 725
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
LQ++H +E L++ V AWA ++ + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDISLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 892 QIPKL 896
Q+ KL
Sbjct: 786 QLRKL 790
>gi|298346820|ref|YP_003719507.1| helicase [Mobiluncus curtisii ATCC 43063]
gi|298236881|gb|ADI68013.1| helicase [Mobiluncus curtisii ATCC 43063]
Length = 816
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 218/433 (50%), Gaps = 73/433 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ + + L D+ +V+DEVHYLSD RG VWEEIII+ V++ICLSA
Sbjct: 144 IIVMTTEVLRNMIYAAAPLADLGYVVMDEVHYLSDHFRGPVWEEIIIHLDAAVRLICLSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STKTALLPLL--DEKGKHMNRKLS 119
T++NA+ A W+ + G T +I++S RPVPL + S +LPL E G H+NR L
Sbjct: 204 TISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISASGEVLPLFAKGEVGGHLNRAL- 262
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L + +V P + RR + + A+ RS
Sbjct: 263 ---LAQAAQQVMPRRGRMPRRIRADR-----------------------PAVARS----- 291
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-------LDECEMSEVELALKRF 232
L +D+LPAI FIF+R+GC+ A + D L D+ + EVE L F
Sbjct: 292 ------LEQQDLLPAIVFIFSRQGCNDAAAQVFDAGLRFTTTEEADQIRL-EVETTLAGF 344
Query: 233 RILYPDAVREPA-IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
A+ + L G+A HHAG LPI K E LF +GL+++VFATETLA GINM
Sbjct: 345 SQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESLFAKGLIRLVFATETLALGINM 404
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL SL+K R LT E Q+ GRAGRRGID+ GH + + + L
Sbjct: 405 PARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGIDSVGHALTLMEVKNPPQLLANL 464
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F ++ M +NLLA +LE A++ VE+SF
Sbjct: 465 ASQQTYPLHSAFVPTFNMAVNLLART-------------------TLEGAKETVEKSFAQ 505
Query: 412 YV--GSNVMLAAK 422
YV GS+ L A+
Sbjct: 506 YVALGSSRKLFAQ 518
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 716 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 774
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 775 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
LR + DL A LA +VC + G RL E S ++ + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASASLAIALESMGRINF 725
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
LQ++H +E L++ V AWA ++ + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDISLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 892 QIPKL 896
Q+ KL
Sbjct: 786 QLRKL 790
>gi|300786755|ref|YP_003767046.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32]
gi|384150085|ref|YP_005532901.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|399538638|ref|YP_006551300.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|299796269|gb|ADJ46644.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32]
gi|340528239|gb|AEK43444.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|398319408|gb|AFO78355.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
Length = 943
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 213/439 (48%), Gaps = 49/439 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S + D+ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 134 LYAGSSTIIDLGYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKP 132
+ ++ G T ++ RPVPL + LL L H +L +N L
Sbjct: 194 LVEVRGDTTVVVDEHRPVPLWQHMLVGNRLLDLFAGDDVHAPGAELRINPTLL------- 246
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
R+ ++ F + + + + R + P +D + L +L
Sbjct: 247 -----------RRTEEIGRQYAPAGFRGPRGRRGAPPRMPRFRPPSRVDVVEQLDRAGLL 295
Query: 193 PAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG--- 247
PAI FIF+R GCDAAV L E+ E+ ++ P+ + + G
Sbjct: 296 PAIVFIFSRAGCDAAVAQCVRSGLRLNGPGEVEEIRRVIEERTADLPEG--DLGVLGYWE 353
Query: 248 ----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
L +G+A HHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K
Sbjct: 354 WREALERGIAGHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVK 413
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+ LT E Q+ GRAGRRGID GH V+ P ++ L PL S F
Sbjct: 414 YNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGVDPKQVAGLASTRTYPLRSSF 473
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 423
Y M +NL+A Q G + EAR+L+EQSF + ++
Sbjct: 474 RPGYNMAVNLVA-----------------QVGAA--EARELLEQSFAQFQADRSVVGTAR 514
Query: 424 ELCKIQKETDVLTSEISDD 442
+ + ++ T+ ++ D
Sbjct: 515 RIERNKEALKGYTAAVTGD 533
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R+ + L PA+LAAV ++LV E + EP V
Sbjct: 785 ESDLLAAECIRHGVWRKLNPAELAAVVSTLVFEA-------RRDTAGEPRLPGGAVPEAW 837
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 878
E ++EL E +H ++ D+ F+ V WA G + +++ L GD
Sbjct: 838 QETARLWVELTEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQELSAGD 897
Query: 879 LARLLRRTIDLLAQI 893
R R+ IDLL QI
Sbjct: 898 FVRWSRQVIDLLDQI 912
>gi|172040727|ref|YP_001800441.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852031|emb|CAQ05007.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 911
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 215/429 (50%), Gaps = 71/429 (16%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE I+ V ++ LS
Sbjct: 113 IVVMTTEVLRNMIYADSDRLASLTHVVMDEVHFLADRWRGPVWEETILNLDHSVTLVSLS 172
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N +E GW+ + G+ ++I + +RPVPLT Y + ++ L + +H+
Sbjct: 173 ATVSNVEEFGGWLRTLRGEMDVIVTDKRPVPLTQYMMVGSKIMRLFSKNAEHLA------ 226
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
H + +++T+ G+ + N + P+ D
Sbjct: 227 ---------------------GEDHPGAINRSLLTAVGKAEAYGNQ-------RGPRRED 258
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD-AV 240
+ HL MLPAI+FIF+R GCD AVQ L L+ + E++ + A + I+ A
Sbjct: 259 VVRHLEQAKMLPAIYFIFSRIGCDKAVQQL----LIRKVELTTPDEAREIGEIIDEGVAG 314
Query: 241 REPA----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
EPA + L++G AHHAG LP ++ +E+LF RGL+KV FATETLA GIN
Sbjct: 315 LEPADLHMLGFRQWRRALMRGFGAHHAGMLPAFRHIVEKLFSRGLLKVCFATETLALGIN 374
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL ++K +LT + Q+ GRAGRRGID G+ V++ +P
Sbjct: 375 MPARTVVLEKMTKFNGEAHAELTPGQYTQLTGRAGRRGIDTVGNAVVLWSPQVDPYAVAA 434
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L A PL S F Y M +NL+ A + EA +++E+SF
Sbjct: 435 LASARTYPLDSTFRPGYNMAVNLI-------------------ATKGWAEAHRILERSFA 475
Query: 411 NYVGSNVML 419
Y ++ ++
Sbjct: 476 QYQANDTIV 484
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 814
GE A I E++L +A LR + DL PA+LAA ++ V E + VR ++ E
Sbjct: 746 GEKLARIHHESDLLVAQCLRRGLWDDLDPAELAAAVSACVFENRRESTVRTQLPTDALEE 805
Query: 815 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 870
+ V V DE R +E F+ V W +G +
Sbjct: 806 AVAHTLRVYKELVSDEERHRLTATREPQ---------LGFATAVHQWVAGAPLEYCLQAA 856
Query: 871 ---DCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R DLL QI K+ ++K+A A + M R
Sbjct: 857 EASGAVLTPGDFVRACGRVKDLLDQI-KMTGYSNDVRKSARKAVDAMQR 904
>gi|390566130|ref|ZP_10246630.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
gi|390170623|emb|CCF85974.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
Length = 956
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 199/388 (51%), Gaps = 44/388 (11%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD ++ DEVHY++D RGT WEE II CP+ VQ+ICLSATV+NA E+A WI + L
Sbjct: 129 VDCVIFDEVHYIADPERGTTWEEAIILCPEHVQLICLSATVSNAQEIADWISRTQRPIRL 188
Query: 84 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
IT R VPL Y+ L ++D G+ + P+ G RR+
Sbjct: 189 ITHLERAVPLELYYYLDQELNLVIDHSGQQVADF--------------PHTGGEVRRQMF 234
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
R+ + Q Q + PQ + + L R MLPAI+F+F+RR
Sbjct: 235 RR-----------TLTQEQRREAE------QAEPQPWEIIETLLGRGMLPAIYFLFSRRD 277
Query: 204 CDAAVQYLEDCNL---LDECEMSEVELALKRF-RILYPDAVREPAIKGLL----KGVAAH 255
C+ Q L L D + +E ++ + L P+ ++ ++ KG+ H
Sbjct: 278 CEEFAQRLSVMRLGLLKDPGAVQRIEAVIENYLGGLRPEDRELEQVQVIVSLARKGIGFH 337
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LPI K +E LF +GL++VVFATETLA G+NMPART V+ +SK R L N
Sbjct: 338 HAGLLPILKQLVETLFGQGLMQVVFATETLALGVNMPARTVVIGRMSKWDGRRRRPLIPN 397
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL- 374
E QMAGRAGRRG+D +G+V++ +P+ E ++ +EP+ S F Y VLNL
Sbjct: 398 EFQQMAGRAGRRGMDIKGNVIVPYSPWISFHETLDIVTGELEPVRSAFAIRYNTVLNLWD 457
Query: 375 --AGAKVMHLSNESDDMKALQAGRSLEE 400
G +V + +S + Q R + E
Sbjct: 458 PPNGNRVRQILQQS--LTQFQTARRVRE 483
>gi|374611638|ref|ZP_09684423.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373548968|gb|EHP75646.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 929
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 163/492 (33%), Positives = 233/492 (47%), Gaps = 65/492 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ P +V ++ LSATV+NA+E GWI + G T ++
Sbjct: 131 VVMDEVHFLADRMRGAVWEEVILHLPDDVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVD 190
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKG---KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
RPVPL + + L D + + R+L ++ L S R +
Sbjct: 191 EHRPVPLWQHVMVGKRVFDLFDYRATGARKSGRELLVDPELLRHI---------SHRLEA 241
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ AD + G+ + + P D + L ++LPAI FIF+R G
Sbjct: 242 DRLADWQPRGRGRNRGRPSIYRG----------PSRPDVIGTLEREELLPAITFIFSRAG 291
Query: 204 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGV 252
CDAAV+ L E + + + R P+A RE GLL+G+
Sbjct: 292 CDAAVKQCLRSSLRLTTNSERARIAEVIDRRCADLPEADLVILDYHEWRE----GLLRGL 347
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K + L
Sbjct: 348 AAHHAGMLPVFRHTVEELFVAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPL 407
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA---EECCKLLFAGVEPLVSQFTASYGM 369
T E Q+ GRAGRRGID GH V++ TP + E L PL S F SY M
Sbjct: 408 TPGEYTQLTGRAGRRGIDVEGHAVVLWTPNDSTVDPAEVAGLASTRTFPLRSSFAPSYNM 467
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
+NL+ Q G + +A KL+E SF Y ++ + + +
Sbjct: 468 TINLVH-----------------QMGPA--QAHKLLESSFAQYQADRSVVGLVRGIERGE 508
Query: 430 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
K + + +E++D A S R E E L+ ++ +R ++ R L R A
Sbjct: 509 KMLEEIAAELADGA---PSPRAEGEIPILEYVRLRLQISERERAQSRASR---LHRRKAA 562
Query: 490 KDILKDFENGHL 501
D L G +
Sbjct: 563 NDALGSLRRGDI 574
>gi|296269793|ref|YP_003652425.1| DSH domain-containing protein [Thermobispora bispora DSM 43833]
gi|296092580|gb|ADG88532.1| DSH domain protein [Thermobispora bispora DSM 43833]
Length = 904
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 220/454 (48%), Gaps = 62/454 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W
Sbjct: 131 LYAGSSTLSGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRLVALSATVSNAEEFGEW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+G++ G T +I RPVPL + L L G+ ++++ L++S E +
Sbjct: 191 LGEVRGDTTVIVDEHRPVPLWQHMLVGNRLYDLF-VTGRDGVQRVNPALLRISRDEARR- 248
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
++ R R +A +R P+VI+ L + +LP
Sbjct: 249 ----AQLRGKRGYARPGR-------------------LRPPSRPEVIE---RLDAAGLLP 282
Query: 194 AIWFIFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-- 249
AI FIF+R GCDAAV L + E E+ P+ + A+ G L
Sbjct: 283 AITFIFSRAGCDAAVMQCRYAGIRLTTDEEREEIRRIADERTAFLPE--EDLAVLGYLEW 340
Query: 250 -----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+G+AAHHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ V+ L K
Sbjct: 341 RECLERGIAAHHAGMLPTFKEIVEELFTKGLVKAVFATETLALGINMPARSVVIEKLDKW 400
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
LT E Q+ GRAGRRGID GH V++ P +L PL S F
Sbjct: 401 NGETHADLTPGEYTQLIGRAGRRGIDVEGHAVVIWQPGMDPIGVARLAGTRTYPLRSSFQ 460
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 424
SY M +NL+ Q GR E AR L+E SF + ++ +
Sbjct: 461 PSYNMAVNLVG-----------------QVGR--ERARLLLEDSFAQFQADRAVVGLARQ 501
Query: 425 LCKIQKETD----VLTSEISDDAIDRKSRRLLSE 454
L K ++ + +T + D + RR LSE
Sbjct: 502 LRKAEEALEGYRQAMTCHLGDFQEYAEFRRRLSE 535
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 11/250 (4%)
Query: 669 VENYKEQRTKVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 726
V ++ + ++ RL++++ R G E + D ++ E K L+ ++ L +RIE
Sbjct: 655 VRDHAAEDEEITRLRRELRRHPCHGCSERE---DHARWAERYYKLLR-ETEALRRRIEGR 710
Query: 727 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 786
+ F R+ V+ L+ T + G A + E +L A LR I L P
Sbjct: 711 SHVIARTFDRVCGVLERLGYLEGET--VTSEGWRLAKLYTELDLLTAECLRAGIWERLDP 768
Query: 787 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
A+LAA +SLV E R + P+ V + + + E++++HG+
Sbjct: 769 AELAACVSSLVYES---RQPDDGRRPRLPAGPVRDALAEMTRLWGELEEIEQEHGLSFTR 825
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 906
D F WA G +++ + L GD R +++ +DLL Q+ ++ +++N
Sbjct: 826 EPDLGFVWAAYRWAKGCGLEDVLTETDLAAGDFVRWVKQILDLLDQLKEVAPEGGTVRQN 885
Query: 907 AVDASNVMDR 916
A+ A + M R
Sbjct: 886 AIKAMDAMRR 895
>gi|336117414|ref|YP_004572182.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334685194|dbj|BAK34779.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 949
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 214/435 (49%), Gaps = 53/435 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG VWEE+II +Q++ LS
Sbjct: 119 VVVMTTEVLRNMIYAGSSTLDNLGFVVMDEVHYLADRFRGAVWEEVIIGLAASIQLVALS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG-------KHM 114
ATV+NA+E W+ ++ G+ ++ S RRPVPL + L L ++
Sbjct: 179 ATVSNAEEFGDWLSEVRGEMAVVVSERRPVPLFQHVLVGKRLYDLFADEAPTAVALPSQS 238
Query: 115 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
+++ +++S E + +D R R + + G++ + + + RS
Sbjct: 239 TAEVNPALVKVSKEEARHVRDDS---RRPRGRSGKGKRAVAYGSGKYGGAAHRSHTDARS 295
Query: 175 QVPQVI------DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-----EDCNLLDECEMS 223
P+ + D + L + +LPAI FIF+R+GCDAAV L N + E++
Sbjct: 296 GRPRSLAVASRPDLVTALDAEGLLPAIVFIFSRQGCDAAVGQLLASGIRLTNAEERAELA 355
Query: 224 EVE------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
E+ L R L D R ++ L +GVAAHHAG LP +K +EE F +GLVK
Sbjct: 356 EIADRHVAGLTAADLRAL--DYSR--FMEALQRGVAAHHAGMLPAFKEAVEEAFVKGLVK 411
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPAR+ VL L K +T E Q+ GRAGRRGID GH V+
Sbjct: 412 AVFATETLALGINMPARSVVLEKLVKYNGETHADITPGEYTQLTGRAGRRGIDVEGHAVV 471
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRS 397
V P L PL S F +Y M +NL+ GR
Sbjct: 472 VWQPGLDPRAVAGLASRRTYPLKSSFAPTYNMAVNLVGA-----------------VGR- 513
Query: 398 LEEARKLVEQSFGNY 412
E AR L+EQSF +
Sbjct: 514 -ERARSLLEQSFAQF 527
>gi|415729405|ref|ZP_11472431.1| helicase [Gardnerella vaginalis 6119V5]
gi|388064439|gb|EIK86973.1| helicase [Gardnerella vaginalis 6119V5]
Length = 877
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 196/386 (50%), Gaps = 67/386 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G T L+
Sbjct: 168 VILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLSATVSNVEDFSSWLESVRGTTHLVVD 227
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK---------HMNRKLSLNYLQLSTSEVK 131
RPVPL + T+ LL L D K + RKL+ + +
Sbjct: 228 EHRPVPLERHVVIQEDGRTEPELLDLYDRDNKGNETKRVNPALTRKLN-EWEHRARRRQD 286
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRS 188
Y D R R +K V G + K++ R P+ VID L +L
Sbjct: 287 SYSDSKYRYRKGKKR--------VVRRGVAESDKST-----RRHTPKRWAVIDELDYL-- 331
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ + EM E+ L+
Sbjct: 332 -GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDEMYEIRKIVDSMVANQLSKEDLHALS 390
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 391 FERFRF------------SLEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 438
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VLV +
Sbjct: 439 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLVDHADFVPAQA 498
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
L V PL S F ++ M +NLL
Sbjct: 499 AALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|302533509|ref|ZP_07285851.1| ATP-dependent RNA helicase [Streptomyces sp. C]
gi|302442404|gb|EFL14220.1| ATP-dependent RNA helicase [Streptomyces sp. C]
Length = 950
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 209/417 (50%), Gaps = 57/417 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQALSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE+I S RPVPL + + L +E+ H R + EV P
Sbjct: 194 LDTVRGDTEVIVSEERPVPLWQHVMAGRRIYDLFEEESDHGGRGSA-------RREVNPD 246
Query: 134 KDGGSRRRNSRKHA--DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+R NSR ++ D +V + + S + I P+VI L + ++
Sbjct: 247 LLRMAREENSRGYSPKDRRRGKMVRE-ADRERERRSRSRIWTPGRPEVIA---RLDNDEL 302
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA-- 244
LPAI FIF+R GC+AAVQ +C + + L R+ + V E PA
Sbjct: 303 LPAINFIFSRAGCEAAVQ---------QCLYAGLRLNDDTARLRVREIVEERTASIPAED 353
Query: 245 ---------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPART
Sbjct: 354 LHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPART 413
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
+L L K +T E Q+ GRAGRRGID GH V++ + L
Sbjct: 414 VILEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMDPVQLAGLAGTR 473
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL++ Q GR +R+L+E SF +
Sbjct: 474 TYPLRSSFKPSYNMAVNLVS-----------------QFGR--HRSRELLETSFAQF 511
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RLK +++L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 723 ERYHRLKRDTQQLERRIEGRTNTIARTFDRIHALLTE---LDYLREDEVTEHGKRLARLY 779
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GE +L + LR + L PA+LAA ++LV E R + + P+ +
Sbjct: 780 GELDLLASECLREGVWEGLNPAELAACVSALVFE---ARQSDDAAPPKVPNGAAKTALGE 836
Query: 826 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ L+E+H + + D F+ WAS + E++ + + GD
Sbjct: 837 MVRIWGRLDALEEEHRINQAEGVGQREPDLGFAWAAYQWASDKSLDEVLREAEMPAGDFV 896
Query: 881 RLLRRTIDLLAQI 893
R ++ ID+L QI
Sbjct: 897 RWCKQVIDVLGQI 909
>gi|156847381|ref|XP_001646575.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
gi|156117253|gb|EDO18717.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
Length = 1274
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 198/375 (52%), Gaps = 23/375 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 427 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 486
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P+++ K + + N K ++ S KP
Sbjct: 487 YVISTPKRPVPLEINIWAKNTLIPVINSKREFLEANFKKHKQLIEGVPSSSKPDDKKTNN 546
Query: 136 -------GGSRRRNS-RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI--DTLWH 185
GGSRR S R + N + S G + N RR + D +
Sbjct: 547 SRGGSIRGGSRRGGSTRGGSSTRGNALSGSRGAGAVGSNKSKFFRRGGPNKKTWPDIINF 606
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-P- 243
L+ R++LP + F+F+++ C+ YLE N + E S++ + +++ RE P
Sbjct: 607 LKGRELLPVVIFVFSKKRCEDYADYLESLNFCNNREKSQIHMFIEKSITRLKKEDRELPQ 666
Query: 244 --AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
I+ LL +G+A HH G LPI K IE LF +GL++V+FATET A G+N+P RT + S
Sbjct: 667 ILKIRSLLERGIAVHHGGLLPIVKELIEILFSKGLIRVLFATETFAMGLNLPTRTVIFSE 726
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-L 359
+ K G L E QMAGRAGRRG+D+ G V+++ K + GV L
Sbjct: 727 IQKHDGVGLRDLNPGEFTQMAGRAGRRGLDDTGTVIVMAYNDPLQSLSFKEVTLGVPTKL 786
Query: 360 VSQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 787 ESQFKLTYNMILNLL 801
>gi|15827694|ref|NP_301957.1| Ski2 subfamily helicase [Mycobacterium leprae TN]
gi|221230171|ref|YP_002503587.1| helicase, Ski2 subfamily [Mycobacterium leprae Br4923]
gi|18203674|sp|Q9ZBD8.1|HELY_MYCLE RecName: Full=Probable helicase HelY
gi|4200282|emb|CAA22943.1| putative helicase [Mycobacterium leprae]
gi|13093245|emb|CAC31714.1| probable helicase, Ski2 subfamily [Mycobacterium leprae]
gi|219933278|emb|CAR71428.1| probable helicase, Ski2 subfamily [Mycobacterium leprae Br4923]
Length = 920
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 233/489 (47%), Gaps = 69/489 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+++D RG VWEE+I++ P +V+++ LSATV+NA+E GW+ + G T ++
Sbjct: 129 VVMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTVRGDTTVVVD 188
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L D ++ N L+ + + D S RN R+
Sbjct: 189 EHRPVPLWQHVLVGKRLFDLFDYDSNVDQSPVNPNLLR-HIAHCR-EADRMSDWRNPRRR 246
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
A S + ++ R +V ++D + +LPAI F+F+R GCDA
Sbjct: 247 AGRGSG----------VRPRFYRSLARPEVIAILD------AEGLLPAITFVFSRFGCDA 290
Query: 207 AVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
AVQ L E E +++ +LA +L RE GLL+G+AAH
Sbjct: 291 AVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWRE----GLLRGLAAH 346
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 347 HAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPG 406
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYE---GAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E Q+ GRAGRRGID GH V++ P E G L A PL S F SY M +N
Sbjct: 407 EYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTIN 466
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
L +H S E A L+EQSF Y ++ + + +
Sbjct: 467 L------VHWM-------------SPERAHALLEQSFAQYQADRSVVGLVRGIERCTQVL 507
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
++SE+ +A E A L+ + +R ++ + R L+R A D+
Sbjct: 508 GDISSELGG-----------PDAPILEYARLRARIAEMERAQSFVFR---LQRKQAANDV 553
Query: 493 LKDFENGHL 501
L G +
Sbjct: 554 LAALRRGDI 562
>gi|262202396|ref|YP_003273604.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085743|gb|ACY21711.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 932
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 198/395 (50%), Gaps = 29/395 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T +I
Sbjct: 126 VVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWIQTVRGDTSVIVD 185
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGK----HMNRKLS--LNYLQLSTSEVKPYKDGGSRR 140
RPVPL+ + + L L G +N +L + + L E P +D R
Sbjct: 186 EHRPVPLSQHMLVGSRLFDLFAPGGPDDRPRVNPELKSFIRHRMLFADEESPARD----R 241
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+ + A+ R + +D +LPAI FIF+
Sbjct: 242 SGGDGRHRGQRGGRGRAHSPRTRQRRGSGALSRPNMVARLD------REGLLPAIGFIFS 295
Query: 201 RRGCDAAV-QYLED-CNLLDECEMSEV-ELALKRFRILYPDAVREPAI----KGLLKGVA 253
R GCD A+ Q L +LLD E + V E+ + L P + GL +G A
Sbjct: 296 RAGCDGALAQCLRSGLSLLDPPEAALVDEVVDRHLSELSPSDAEVLGVDEWRAGLRRGFA 355
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K + LT
Sbjct: 356 AHHAGLLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYNGESHVDLT 415
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V+V TP EE L A PL S F Y M +NL
Sbjct: 416 PGEFTQLTGRAGRRGIDVEGHAVVVWTPEVAPEEVAGLAGARTFPLRSSFAPEYNMAVNL 475
Query: 374 ---LAGAKVMHLSNESDDMKALQAGRS-LEEARKL 404
L A L N S QA RS + +ARKL
Sbjct: 476 IGRLGMAGSRELLNRS--FAQFQADRSVVGQARKL 508
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 804
+T + G I E++L + LR + L P +LAAV ASLV E + V
Sbjct: 755 DTVTVTDAGRLLGRIYSESDLVVTECLRAGVWEGLAPPELAAVVASLVYESRRDSYRGVD 814
Query: 805 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 864
N+ + V + E++ +H V D+ FS V WASG +
Sbjct: 815 AMPGNAGVRAAMAATAAVW-------TEVTEVERRHQVTPTREPDTGFSVAVSLWASGRS 867
Query: 865 WREMMMDCA-----LDDGDLARLLRRTIDLLAQI 893
E + L GD R R+ +DLL QI
Sbjct: 868 LTEALAAAGERGQLLSPGDFVRWNRQVVDLLEQI 901
>gi|257056196|ref|YP_003134028.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
gi|256586068|gb|ACU97201.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
Length = 918
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 171/502 (34%), Positives = 236/502 (47%), Gaps = 66/502 (13%)
Query: 4 RIVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V M+ +ES L D+ +VLDEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 122 QIVVMTTEVLRNMLYAESTTLDDLGYVVLDEVHYLADRFRGAVWEEVILHLPDYVRVVGL 181
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL-LDEKGKHMNRKLS 119
SATV+NA+E W+ ++ G T ++ RPVPL + L L + E+ KL+
Sbjct: 182 SATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMLVGGRLYDLFVGERADTGEAKLN 241
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L+ + + G R R+ R G Q R + P
Sbjct: 242 PRLLRAVEEAGRMHVPAGLRGRSRR--------------GAPQRGP-------RYRPPSR 280
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-------NLLDECEMSEVELALKRF 232
+ + L +LPAI FIF+R GCDAAV C N DE + + +R
Sbjct: 281 TEIVDRLDRAGLLPAIVFIFSRAGCDAAVT---QCVRSGLRLNTPDEVQQVR-RIVDERT 336
Query: 233 RILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
L P + +GL +G+AAHHAG LP +K +EELF RGLVKVVFATETLA G
Sbjct: 337 ADLPPSDLEVLGYWEWREGLEQGIAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALG 396
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + LT E Q+ GRAGRRGID GH V+V P +
Sbjct: 397 INMPARTVVLERLVKYNGESHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQV 456
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L PL S F Y M +NL+ + +AR+L+EQS
Sbjct: 457 AGLASTRTYPLRSSFRPGYNMAVNLVGRFGAV-------------------KARELLEQS 497
Query: 409 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
F + ++ +I++ T+ L DA+ +LS ++ + E K
Sbjct: 498 FAQFQADRSVVGLSR---RIERNTEALRGYA--DAVTGDFDEMLSYLTLRK--KISEREK 550
Query: 469 AEKRFRTELRRRMELKRFSALK 490
A R T RR K L+
Sbjct: 551 ALARQNTAARRAQTAKSLEKLR 572
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL ++RL +++ S + F RI ++ E L + + G+ A +
Sbjct: 700 ERYQRLAEDNQRLKRKVAATTHSLARAFDRIRRLLIERGYLGESGDDVTEHGQLLARLYS 759
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + + + P+ V
Sbjct: 760 ESDLLAAECIRQRVWHGLAPAELAAVVSTLVYEARR----DSTAEAKVPAGPVNKAWQET 815
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
S +E + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 816 VRLWSDLVEDERRHRLDPTREPDAGFAWPVYRWARGESLEKVLTSAEVNGQELSAGDFVR 875
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLEQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|357588678|ref|ZP_09127344.1| ATP-dependent DNA helicase [Corynebacterium nuruki S6-4]
Length = 896
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 236/507 (46%), Gaps = 110/507 (21%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V MV + S D + +V+DEVH+L+D SRG VWEE+I+ V ++ LS
Sbjct: 104 VVVMTTEVLRNMVYATSDRLDRLTHVVMDEVHFLADPSRGPVWEEVILNLDPSVILVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GW+ + G+T+LI ++ RPVPL Y + +LP+ ++ +
Sbjct: 164 ATVSNAEEFGGWLTTVRGQTDLIITTHRPVPLHQYMMVGSQMLPMFADQDRP-----DPG 218
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
Y+ + + + RRR P+ D
Sbjct: 219 YVNRALLHAAGHAEDTGRRRG----------------------------------PKRTD 244
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--------------EDCNLLDEC--EMSEV 225
+ +R+ MLPAI+FIF+R GCDAA++ L E + +DE E+
Sbjct: 245 VVMRMRAAGMLPAIYFIFSRNGCDAAMRQLLVDRIRLTTDDERDEILSTVDEGVHEIPTE 304
Query: 226 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+L + FR + L G AAHHAG LP ++ +E+LF RGL+KV FATETL
Sbjct: 305 DLGVLGFRQWR---------RALGNGYAAHHAGMLPAFRHIVEDLFTRGLLKVCFATETL 355
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPAR+ VL L K + LT + Q+ GRAGRRG D G+ V++ +P
Sbjct: 356 ALGINMPARSVVLEKLVKFNGEAHVDLTPGQYTQLTGRAGRRGKDTEGNAVVLWSPGIDP 415
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
L PL S F Y M +NL+ R E++++++
Sbjct: 416 YAVANLAQTRTYPLDSTFRPGYNMAVNLI-------------------GTRGYEDSQRIL 456
Query: 406 EQSFGNY-VGSNVMLAA------KDELCKIQKE---------TDVLTSEISDDA------ 443
++SF Y ++V+ A + +L +QK+ DV EI D A
Sbjct: 457 DRSFAQYQTAAHVVEEAARLTQRRRDLAGLQKDLARTLKKIHADVTPEEIVDYARLRREL 516
Query: 444 --IDRKSRRLLSEAAYKEMANLQEELK 468
+RK+RR E KE A L L+
Sbjct: 517 SVTERKARRNAGEEREKETAALLASLQ 543
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 734 FLRISNVIHETRALDIN----TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
F I +++ E L+++ T V+ GE A I E++L +A LR + L PA+L
Sbjct: 696 FDHIVDLLAELDYLELDGGRETAVVTEEGEKLARIHHESDLLVAQCLRRGVWDGLDPAEL 755
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
AA ++ V E K ++ S + P+ +++ +N + +E+HG+
Sbjct: 756 AAAASTCVFENRKETRPEDRSDVGVPTEALVDAVNAVQRIHRELTSDEERHGLPQTREPQ 815
Query: 850 SQFSGMVEAWASGLTWREMMMDCA------LDDGDLARLLRRTIDLLAQI 893
+ F + W +G E + A L GD R R IDLL QI
Sbjct: 816 TGFVTALHQWTAGAPL-EYCIRAAEASGAELTPGDFVRWCNRVIDLLGQI 864
>gi|455649626|gb|EMF28422.1| helicase [Streptomyces gancidicus BKS 13-15]
Length = 937
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 167/511 (32%), Positives = 253/511 (49%), Gaps = 61/511 (11%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + SG L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LS
Sbjct: 122 VVVMTTEVLRNMLYAGSGTLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLS 181
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G TE+I S RPVPL + + L +E G+ + ++ +
Sbjct: 182 ATVSNAEEFGDWLDTVRGDTEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPD 240
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+++ E G RRR N + + + + + + P+VI+
Sbjct: 241 LTRMARMEAS-RPSWGDRRRGR--------NGMREA--DRERERRQRSRVWTPGRPEVIE 289
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEV-ELALKRFRILYPD 238
L + +LPAI FIF+R C+AAVQ L DE ++V +L +R + P+
Sbjct: 290 ---RLDAEGLLPAITFIFSRAACEAAVQQCLHAGLRLNDEEARAKVRDLVEERTASIPPE 346
Query: 239 AVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
+ ++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR
Sbjct: 347 DLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPAR 406
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ VL L K +T E Q+ GRAGRRGID GH V++ E L
Sbjct: 407 SVVLEKLVKWNGEQHADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGT 466
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 467 RTYPLRSSFKPSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQA 507
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 474
++ ++ + ++ + + ++ D ++E A L+ ELK +
Sbjct: 508 DKSVVGISRQVQRNEEGLEGYKASMTCHLGD-----------FEEYARLRRELKDRE--- 553
Query: 475 TELRRRMELKRFSALKDILKDFENG---HLP 502
EL R+ +++R + L+ G H+P
Sbjct: 554 NELARQGQMQRRAEAAVALEKLRPGDIIHVP 584
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 678 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 737
++ARL+K + R + D ++ E + RL + +L +RIE + + F RI
Sbjct: 690 EIARLRKAL-RAHPCHGCQDREDHARWAE-RYHRLLRDTSQLERRIEGRTNTIARTFDRI 747
Query: 738 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
++ E L + + G+ A + GE +L + LR ++ L PA+LAA ++LV
Sbjct: 748 VALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLRERVWEGLGPAELAACVSALV 805
Query: 798 SEGIKVRLWKNNSSIYEPST-------TVINVINVLDEHRSSF-LELQEKHGVEIPCCLD 849
E R+ + ++ PS ++ + LD F + E G P D
Sbjct: 806 YES---RVADDATAPKLPSGRAKAALGEMVRIWGRLDALEEDFRISQTEGVGQREP---D 859
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
F+ WASG E++ + + GD R ++ ID+L QI
Sbjct: 860 LGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLGQI 903
>gi|256832524|ref|YP_003161251.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686055|gb|ACV08948.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 950
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 206/391 (52%), Gaps = 49/391 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S D V +++DEVHYL+D RG VWEE+II+ + VQ++ LS
Sbjct: 143 IVVMTTEVLRNMIYAQSTTLDNVGYVIMDEVHYLADRFRGAVWEEVIIHLDRSVQLVSLS 202
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT---ALLPLLDEKGKHMNRKL 118
ATV+NA+E W+ + G T +I S RRPVPL + T+ + L+D ++
Sbjct: 203 ATVSNAEEFGDWLAAVRGSTAVIVSERRPVPLWQHVITQGRSDSPGGLIDLYAHTVDPTD 262
Query: 119 SLNYLQLST---SEVKPYKDGGSR--RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
++ + ++ +D G R RR +H+ RR
Sbjct: 263 PGPTPPINPDLLNTMRRGRDSGPRQPRRGRPQHSG-----------------------RR 299
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVELA 228
P + L D+LPAI+FIF+R GC+AAV E C L E + ++ +
Sbjct: 300 G--PPRFAVINELAEADLLPAIYFIFSRAGCNAAV---EQCLATGITLTTETQARQIRII 354
Query: 229 LK-RFRILYPDAVR----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
++ R + P+ + + GL +G+AAHHAG LP++K +EELF RGL+KVVFATE
Sbjct: 355 VESRVASVPPEDLSVLGFHGWLDGLTRGIAAHHAGMLPLFKEVVEELFSRGLIKVVFATE 414
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA GINMPART VL L K + + +T E Q+ GRAGRRGID GH V+V
Sbjct: 415 TLALGINMPARTVVLEKLVKWNGTAHVDMTPGEYTQLTGRAGRRGIDVEGHAVVVDHVGL 474
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+L PL S F+ +Y M +NL+
Sbjct: 475 DPMALVRLASRRTYPLRSSFSPTYNMAVNLV 505
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 4/190 (2%)
Query: 712 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ--VIFPLGETAAAIRGENE 769
L+ + L RI++ S K F +I V+ + ++ N V+ G T I EN+
Sbjct: 738 LRREHEGLLARIDRKTGSIAKVFDKICRVLDQYGYVERNGDHYVVTEQGRTLQRIYAEND 797
Query: 770 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L +A L + + L AQLA ++ V + + S P+ + I +
Sbjct: 798 LLIAECLTHGVWKGLDAAQLAGAVSAAVYQA-RGEEHAEPSIPGGPTGKLGGSIEKMAAM 856
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ EL++ G+E LD+ + AW G + ++ L GD R ++ +D
Sbjct: 857 WGTLTELEDSLGLEETGDLDAGLVWAIHAWTRGRSLDAVLDQSELTAGDFVRWAKQILDA 916
Query: 890 LAQIPKL-PD 898
L I + PD
Sbjct: 917 LDHIAHVAPD 926
>gi|134098834|ref|YP_001104495.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291005808|ref|ZP_06563781.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
gi|133911457|emb|CAM01570.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
Length = 925
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 212/424 (50%), Gaps = 59/424 (13%)
Query: 4 RIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
++VV + V M+ + S D + +V+DEVHYL+D RG VWEE+I++ P+ VQ+ L
Sbjct: 125 QVVVMTTEVLRNMLYAGSSTVDQLGYVVMDEVHYLADRFRGAVWEEVILHLPEYVQLASL 184
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ ++ G T ++ RPVPL + + + L G+ +R+L +
Sbjct: 185 SATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMLVGSRMFDLFG--GETTDRELKI 242
Query: 121 N-YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR--RSQVP 177
N L T E+ SR H T +G+ R R P
Sbjct: 243 NPNLLRHTQEL------------SRVH---------TPYGRRGGPNGKRRGPRPPRFYAP 281
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRIL 235
++ L L + +LPAI FIF+R GCDAAV L E E+ E+ +
Sbjct: 282 SRVEILNGLDAAGLLPAIVFIFSRAGCDAAVSQCVRAGMRLTSEDEVDEIRRVIDEHTSN 341
Query: 236 YPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
P++ + + G L +G+AAHHAG LP +K +EELF RGLVK VFATETLA G
Sbjct: 342 LPES--DLTVLGYWEWREALERGLAAHHAGLLPAFKETVEELFVRGLVKAVFATETLALG 399
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + L+ E Q+ GRAGRRGID GH V+V P +
Sbjct: 400 INMPARTVVLERLVKFNGESHVDLSPGEYTQLTGRAGRRGIDVEGHAVVVWQPGIDPKGV 459
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L PL S F Y M +NL+ + GR E AR+L+EQS
Sbjct: 460 AGLASTRTYPLRSSFRPGYNMAVNLVQ-----------------RVGR--ESARELLEQS 500
Query: 409 FGNY 412
F +
Sbjct: 501 FAQF 504
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 12/195 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 763
E+ +RL+ +++L +++ S + F RI ++ E + ++ P+ G
Sbjct: 704 ERHERLRGETEQLRRKVAATTHSLARSFDRIIALLAERDYVLLDEDAEEPVTEHGRRLTR 763
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+ E++L A LR + L P +LAAV +SLV E + + + PS V + +
Sbjct: 764 LYSESDLLAAECLRVGVWEKLGPPELAAVVSSLVYESRR----EGPMAPAVPSGAVSDAL 819
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 878
+ + + +H ++ D F+ V WA G + ++ L GD
Sbjct: 820 QATWQLWGELEDDERRHKLDRTREPDPGFAWPVFRWARGESLERVLTAAESTGHELSAGD 879
Query: 879 LARLLRRTIDLLAQI 893
R R+ +DLL QI
Sbjct: 880 FVRWCRQVVDLLDQI 894
>gi|25028174|ref|NP_738228.1| helicase [Corynebacterium efficiens YS-314]
gi|259507232|ref|ZP_05750132.1| helicase, C-:DEAD/DEAH box helicase [Corynebacterium efficiens
YS-314]
gi|23493458|dbj|BAC18428.1| putative helicase [Corynebacterium efficiens YS-314]
gi|259165175|gb|EEW49729.1| helicase, C-:DEAD/DEAH box helicase [Corynebacterium efficiens
YS-314]
Length = 940
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/455 (32%), Positives = 229/455 (50%), Gaps = 46/455 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +S L + +V+DE+H+L+D SRG VWEE+I+ + V+II LS
Sbjct: 108 IVVMTTEVLRNMIYGQSFALERLSHVVMDEIHFLADASRGAVWEEVILNLDESVKIIGLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLS 119
ATV+N++E W+ + G T++I + RPVPL Y + +LPL E G +N++L
Sbjct: 168 ATVSNSEEFGEWLTTVRGDTQVIVTDHRPVPLDQYMMVQRKVLPLF-EPGTDGRLNKQLE 226
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS--INAIRRSQVP 177
+L++ +P + R A + Q++ ++ S + R +
Sbjct: 227 ATIDRLNSQASEPGRSEYRSGEGFRTRAKGGRDRGRDDGRQNRDTRRSGQVREQDRHRPL 286
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRIL 235
+ L L+ +MLPAI FIF+R GCD A+ L+ D+ E E+ RI+
Sbjct: 287 GRPEVLRILQGMNMLPAITFIFSRAGCDGALYQCLRSKLILTDQDEAQEIA------RII 340
Query: 236 YPDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
V P L++G AAHHAG LP ++ +EELF +GLV+ VFATET
Sbjct: 341 DAGVVGIPEEDLQVLNFKQWRSALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATET 400
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K G + LT + Q+ GRAGRRGID G+ V+ +P
Sbjct: 401 LALGINMPARTVVLEKLVKFDGEGHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWSPAMD 460
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
L PL+S F Y M +NLL K + E++ +L
Sbjct: 461 PRFVAGLASTRTYPLISTFQPGYNMSVNLL---------------KTI----GYEQSLRL 501
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
+E+SF + ++ E+ + +++ + L +++
Sbjct: 502 LEKSFAQFQADGSVVGDVREIERAERKVEELRAQL 536
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 761
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 719 TAERMLRKQRDLNKLTGTVDRARETLGRTFERILSLLSEMDYVDYADPDNPVITEEGERL 778
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E++L +A L+ I L PA+LA V + E + + S + +
Sbjct: 779 AKIHNESDLLVAQCLKRGIWEGLDPAELAGVVSMCTFENRR----ETGGSPEAVTEAMAE 834
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
+N + S ++ + +H + + ++ F+ + WA+G M A L
Sbjct: 835 AMNHTERIWSELVDDERRHRLPLTRQPEAGFAMAIHQWAAGAPLGYCMAAAAENGAELTP 894
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 910
GD R R+ IDLL Q+ K D+ R + +DA
Sbjct: 895 GDFVRWCRQVIDLLEQVAKTSYSDEMARTARQGIDA 930
>gi|296117879|ref|ZP_06836462.1| HelY [Corynebacterium ammoniagenes DSM 20306]
gi|295969110|gb|EFG82352.1| HelY [Corynebacterium ammoniagenes DSM 20306]
Length = 935
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 207/390 (53%), Gaps = 30/390 (7%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DE+H+L+D SRG VWEE+I+ + V II LS
Sbjct: 103 IVVMTTEVLRNMIYADSPALHRLSHVVMDEIHFLADASRGAVWEEVILNLDESVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSL 120
ATV+N++E W+ + G T+++ + RPVPL + L PL + G +N +L
Sbjct: 163 ATVSNSEEFGDWLSTVRGDTKIVVTEHRPVPLDQWMMLGRKLFPLFEPASGGQVNSELER 222
Query: 121 NYLQL---STSEVKP-YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L S+ E + YK G R +R H+ +N G Q ++ + R V
Sbjct: 223 KIARLEAGSSDEGREDYKSGKGFRARARHHSREPRDNHGGRSGA-QRPQDRYRPLGRPDV 281
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVE-------- 226
+V L+ ++MLPAI FIF+R GC+ A+ Q L L E E E++
Sbjct: 282 LKV------LQGQNMLPAITFIFSRAGCEGALYQCLRSRMTLTSEEEAEEIKDIVDAGVE 335
Query: 227 -LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+ + ++L R+ L +G AAHHAG LP ++ +E+LF +GLV+ VFATETL
Sbjct: 336 GIPEEDLQVLNFRQWRQ----ALSRGFAAHHAGMLPAFRHIVEDLFVKGLVRAVFATETL 391
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPART VL L K + LT + Q+ GRAGRRGID G+ V++ P
Sbjct: 392 ALGINMPARTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVMWAPAMDP 451
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
+ L PL+S F Y M +NLL
Sbjct: 452 RQVAGLASTRTYPLISTFQPGYNMAINLLG 481
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 27/264 (10%)
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 717
+L + H E R ++A L +K+AR E +E KK+ TV+ + + + R
Sbjct: 687 ILRDAIRLHPVHEWPATDREQLAGLAQKLARRE--RELKKLTTTVERATDTLGKTFERIV 744
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 777
L +++ +E G E T VI GE A I + +L +A L+
Sbjct: 745 DLLAQMDYVEFEGLGE---------------DRTPVITDEGERLALIHNDCDLLVAQCLK 789
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+I DL PA+LA V + E K + S + + + +N + + +
Sbjct: 790 RRIWDDLDPAELAGVVSMCSFENRK----ETAGSPDAATDRMADAMNATLRIHAELITDE 845
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQ 892
+ H + + D+ F+ + WA+G M A L GD R R+ IDLL Q
Sbjct: 846 QLHRLPLTRQPDAGFALALHQWAAGAPLGYCMSAAAESGAELTPGDFVRQCRQAIDLLQQ 905
Query: 893 IPKLPDVDQRLQKNAVDASNVMDR 916
+ K D ++ NA A + + R
Sbjct: 906 VAKTAYTDD-VRANARRAVDAIQR 928
>gi|433648407|ref|YP_007293409.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
gi|433298184|gb|AGB24004.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
Length = 914
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 155/425 (36%), Positives = 211/425 (49%), Gaps = 61/425 (14%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V + ++ L+ + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 106 VVVMTTEVLRNMLYANSPALYGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKL 118
ATV+NA+E GWI + G T ++ RPVPL + L L D K R+L
Sbjct: 166 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVMVGKRLFDLFDYRASKAAKSGREL 225
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
++ L R +R+ AD ++ G+ + S R P
Sbjct: 226 LVDPELL-------------RHIANRREADRLADWQPRGRGRGRPS-----IYRPPGRPD 267
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVELALKR---- 231
VI TL +LPAI F+F+R GCDAAV+ +L DE + E+ +R
Sbjct: 268 VISTL---DREGLLPAITFVFSRVGCDAAVKQCLRSSLRLTSDEERVRIAEIIDRRTSEL 324
Query: 232 ----FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
+L RE GLL+G+AAHHAG LPI++ +EELF GLVK VFATETLA
Sbjct: 325 NEADLVVLDYHEWRE----GLLRGLAAHHAGMLPIFRHTVEELFTAGLVKAVFATETLAL 380
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
GINMPART +L L K + LT E Q+ GRAGRRGID GH V++ P E
Sbjct: 381 GINMPARTVLLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDIEGHAVVLWHPDIDPAE 440
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
L PL S F +Y M +NL+ + M Q A KL+E
Sbjct: 441 VAGLASTRTFPLRSSFAPTYNMTINLV------------NQMGPTQ-------AHKLLES 481
Query: 408 SFGNY 412
SF Y
Sbjct: 482 SFAQY 486
>gi|415726948|ref|ZP_11471176.1| helicase [Gardnerella vaginalis 00703Dmash]
gi|388062677|gb|EIK85282.1| helicase [Gardnerella vaginalis 00703Dmash]
Length = 877
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 197/386 (51%), Gaps = 67/386 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G T L+
Sbjct: 168 VILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLSATVSNVEDFSAWLESVRGTTHLVVD 227
Query: 87 SRRPVPLTWYF------STKTALLPLLD--EKGKH-------MNRKLSLNYLQLSTSEVK 131
RPVPL + T+ LL L D GK + RKL+ + +
Sbjct: 228 EHRPVPLERHVVIQEDGRTEPELLDLYDRDNNGKETKRVNPALTRKLN-EWEHRARRRQD 286
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRS 188
Y D R R +K + G + K++ R P+ VID L +L
Sbjct: 287 SYSDSKYRYRKGKKR--------IVRRGVAESDKST-----RRHTPKRWAVIDELDYL-- 331
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVE------------------LA 228
MLP I+FIF+R GCD AVQ + L+ + EM E+ L+
Sbjct: 332 -GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDEMYEIRKIVDNMVANQLSKEDLHALS 390
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA G
Sbjct: 391 FERFRF------------SLEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLALG 438
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VLV +
Sbjct: 439 LNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLVDHADFVPAQA 498
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
L V PL S F ++ M +NLL
Sbjct: 499 AALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|229817648|ref|ZP_04447930.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785437|gb|EEP21551.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 858
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 259/530 (48%), Gaps = 76/530 (14%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S D + ++LDEVHYL+D RG VWEE+II+ P+ V+I+ LS
Sbjct: 131 IVVMTTEVLRNMLYEHSTTLDALRYVILDEVHYLADRFRGPVWEEVIIHLPQRVRIVALS 190
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH 113
ATV+N ++ WI + G+T+LI S +RPVPL + T+ ++ L D+ G
Sbjct: 191 ATVSNVEDFGHWISSVRGETKLIVSEKRPVPLEQHVMLQQNDRTEPEIIDLYRRDDSGAQ 250
Query: 114 ---MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
+N +L+ QL + + S + R HA + G K +
Sbjct: 251 TSVVNTELARRLSQLDHQASRRRGEERSGKFKRRGHAGGDRGR-----GSSPSYKPERHT 305
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DEC------ 220
RR V +D L +L DMLP I+FIF+R GCD AV+ + L DE
Sbjct: 306 PRRWAV---VDELNYL---DMLPGIYFIFSRNGCDQAVEQCINAGLELTSDDEAHRIRRI 359
Query: 221 --EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
EM E +L+ + L R L +G A+HHAG + +++ +E LF+ GLVK+
Sbjct: 360 VDEMVEGQLSQDDLKTLGFSRFR----FALEEGFASHHAGMVALFRQIVERLFEEGLVKM 415
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR V+ L K +G + LT E Q+ GRAGRRGID GH V+V
Sbjct: 416 VFATETLALGINMPARCVVVEKLEKYDGTGHVPLTPGEFTQLTGRAGRRGIDTIGHAVVV 475
Query: 339 Q----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 394
P A K ++ PL S F ++ M +NLL + D A
Sbjct: 476 DHRGFVPATAAALSSKRVY----PLHSSFHPTFNMAVNLLNSSDYATARTTLDHSFAQWE 531
Query: 395 GR-----------SLEEARKLVEQSF----GNY-----VGSNVMLAAKDELCKIQKE--- 431
SLE+A K EQ+F G++ + N+ A K+E +++ +
Sbjct: 532 ANASAWQLESQMASLEQALKGYEQAFVCEHGDFKEFMTIRMNLSSAEKNERNRLKHQLFR 591
Query: 432 TDVLTSEISDDAIDRKS---RRLLSEAAYKEMANLQEELKAEKRFRTELR 478
TD SE + A+DRK R L + K+ +LQ L+ R+ E+R
Sbjct: 592 TDADRSE-AFRALDRKIGKLRTLEQQHPCKQCPDLQRHLRWGHRWAREMR 640
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 732 KEFLRISNVIHETRALDINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLKPAQ 788
++F RI +V+ E L Q L E +R E ++ LA ++ + L PA
Sbjct: 658 RQFDRICDVLTELGYLSGQDQHDVILTEHGQLLRRLYSEQDVVLAQAIQAGVFDLLPPAG 717
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ---EKHGVEIP 845
LAAV +SLV E R Y P + + E ++ E+ E HG+
Sbjct: 718 LAAVLSSLVYE---ARRGSGGEPRYYPGSMHGPIAVAARELKTIHAEVSDCCEAHGMNPL 774
Query: 846 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDVDQ 901
+D ++ WA G + E++ L GD R +R D+L QI P L
Sbjct: 775 PGIDFGILDIMYEWADGRSLSEVLRGTELTGGDFVRNAKRLSDMLQQIAVAEPYLGKDGA 834
Query: 902 RLQKNAVDASNVMDR 916
L A +A+ +++R
Sbjct: 835 SLASRAREAAELVNR 849
>gi|256391637|ref|YP_003113201.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256357863|gb|ACU71360.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 951
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 159/444 (35%), Positives = 217/444 (48%), Gaps = 35/444 (7%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ + SG L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LS
Sbjct: 116 IVVMTTEVLRNMLYAGSGTLSGLGYVVMDEVHYLADRFRGAVWEEVIIHLPESVRLVALS 175
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLS 119
ATV+N +E AGW+ + G T+ I RPVPL + + + L G+ M
Sbjct: 176 ATVSNVEEFAGWLRTVRGDTKSIVWEHRPVPLWQHVLSGRRMFDLFANGADGEAMPGANG 235
Query: 120 LNYLQLSTS-EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
+ + V P +R + + G R VP
Sbjct: 236 QGGISAARELRVNPELVRLNRESSESMYKRGGPRGGGGGGGNRGQRGRVQRRGRGGWVPS 295
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELAL--KRFRI 234
+D + L + +LPAI FIF+R GCDAAVQ LL+ E + V+ + + RI
Sbjct: 296 RVDVIEKLDTEGLLPAITFIFSRAGCDAAVQQFLHGGVRLLNADERARVKAHVLERTGRI 355
Query: 235 LYPDA---VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
D GL +GVAAHHAG LP +K +EELF +GLVK VFATETLA GINM
Sbjct: 356 PSEDLNVLGFHDWFDGLQRGVAAHHAGMLPTFKEIVEELFVQGLVKAVFATETLALGINM 415
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART V+ +L+K + LT+ E Q+ GRAGRRGID GH V++ A+ L
Sbjct: 416 PARTVVMEALTKWNGENHVDLTAGEYTQLTGRAGRRGIDIEGHAVVLWRADLDAKALAGL 475
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F SY M +NL+ Q G E AR L+E SF
Sbjct: 476 AGTRTYPLRSSFKPSYNMAVNLVG-----------------QFG--AERARNLLETSFAQ 516
Query: 412 YVGSNVMLAAKDELCKIQKETDVL 435
Y ++ + ++K TD L
Sbjct: 517 YQADQAVVGLTRQ---VRKNTDAL 537
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 7/217 (3%)
Query: 677 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 736
T+++RL+K I R + D ++ E + +L +K+L KR+ S + F R
Sbjct: 702 TEISRLRKAI-RAHPCHGCQDREDHARWAE-RFHKLDRETKQLQKRVAGRTNSIARVFDR 759
Query: 737 ISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796
+ ++ + LD + + P+G+ + E +L A LR + L P +LAA ++L
Sbjct: 760 VCGLLEQLGYLDGDQ--VTPIGKRLGRLYTELDLLTAETLRAGLWEGLTPPELAACVSAL 817
Query: 797 VSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 856
V E R + P V ++ + + +L+ H +E D F+
Sbjct: 818 VYE---ARRADDAGPPRLPGGAVPKTLDEMVRLWAKLEDLETDHHLEFQREPDLGFALPA 874
Query: 857 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
WASG E++ D + GD R ++ IDLL Q+
Sbjct: 875 FHWASGKALEEVLWDVEMPAGDFVRWCKQLIDLLGQV 911
>gi|256825235|ref|YP_003149195.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256688628|gb|ACV06430.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
Length = 953
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 204/425 (48%), Gaps = 44/425 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S S L + +V+DEVHYL+D RG VWEE+I++ P +VQ+I LSATV+NA+E W
Sbjct: 129 LYSDSSTLAGLGFVVMDEVHYLADRMRGVVWEEVILHLPDDVQVISLSATVSNAEEFGAW 188
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS-------LNYLQLS 126
+ Q+ G TE++ S RPVPL + L L E G R + + L+ +
Sbjct: 189 LKQVRGDTEVVVSEVRPVPLWQHMMVGNDLYDLFPEGGVGARRGSASAVNPELMARLRTA 248
Query: 127 TSEVKP-YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 185
+E +++ R S H R + P +
Sbjct: 249 QAERTAWHREDSGGPAGRRGRGRRGSGRARDDHRDHGGPSRGGPPTRGTGTPSRTQVVQA 308
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYL-----------EDCNLLDECEMSEVELALKRFRI 234
L + +LPAI FIF+R GCD+AV+ L E + DE E +++A + +
Sbjct: 309 LHADGLLPAIVFIFSRIGCDSAVRQLLASGTRLISDEEGEAIHDEVEARVLQVAPEDLGV 368
Query: 235 L-YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
L Y D V +GL G AAHHAG LP+++ +EELF G ++ VFATETLA G+NMPA
Sbjct: 369 LGYHDFV-----EGLTNGYAAHHAGMLPLFREIVEELFAAGRIQCVFATETLALGVNMPA 423
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V+ L K LT E Q+ GRAGRRGID GH V++ P L
Sbjct: 424 RTTVIEKLVKFNGENHADLTPAEYTQLTGRAGRRGIDVEGHAVVLSGPRVDPTHVAGLAS 483
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
PL S F S M +NL+ + GR + AR+L+E+SF +
Sbjct: 484 TRTFPLKSSFRPSPNMAVNLVE-----------------RMGR--QSARELLEESFAQFQ 524
Query: 414 GSNVM 418
M
Sbjct: 525 ADRAM 529
>gi|315655365|ref|ZP_07908265.1| helicase [Mobiluncus curtisii ATCC 51333]
gi|315490305|gb|EFU79930.1| helicase [Mobiluncus curtisii ATCC 51333]
Length = 816
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 217/433 (50%), Gaps = 73/433 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ + + L D+ +V+DEVHYLSD RG VWEEIII+ V++I LSA
Sbjct: 144 IIVMTTEVLRNMIYAAAPLADLGYVVMDEVHYLSDHFRGPVWEEIIIHLDAAVRLISLSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STKTALLPLL--DEKGKHMNRKLS 119
T++NA+ A W+ + G T +I++S RPVPL + S +LPL E G H+NR L
Sbjct: 204 TISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISASGEILPLFAKGEVGGHLNRAL- 262
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L + +V P + RR + + A+ RS
Sbjct: 263 ---LAQAAQQVMPRRGRMPRRIRADR-----------------------PAVARS----- 291
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-------LDECEMSEVELALKRF 232
L RD+LPAI FIF+R+GC+ A + D L D+ + EVE L F
Sbjct: 292 ------LEQRDLLPAIVFIFSRQGCNDAAAQVFDAGLRFTTPQEADQISL-EVETTLAGF 344
Query: 233 RILYPDAVREPA-IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
A+ + L G+A HHAG LPI K E LF +GL+++VFATETLA GINM
Sbjct: 345 SQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESLFAKGLIRLVFATETLALGINM 404
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL SL+K R LT E Q+ GRAGRRGID+ GH + + + L
Sbjct: 405 PARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGIDSVGHALTLMEVKNPPQLLANL 464
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F ++ M +NLLA +LE A++ VE+SF
Sbjct: 465 ASQQTYPLHSAFVPTFNMAVNLLART-------------------TLEGAKETVEKSFAQ 505
Query: 412 YV--GSNVMLAAK 422
YV GS+ L A+
Sbjct: 506 YVALGSSRKLFAQ 518
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 716 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 774
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARMTRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 775 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
LR + DL A LA +VC + G RL E S + + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINF 725
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 892 QIPKL 896
Q+ KL
Sbjct: 786 QLRKL 790
>gi|441515098|ref|ZP_20996906.1| putative helicase [Gordonia amicalis NBRC 100051]
gi|441450085|dbj|GAC54867.1| putative helicase [Gordonia amicalis NBRC 100051]
Length = 942
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 231/452 (51%), Gaps = 44/452 (9%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 IVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + + L D + +
Sbjct: 161 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPAHR---- 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-- 179
+ S V P +R+ R + + +S G+ + ++ R + P +
Sbjct: 217 --KGSRPRVNP-----ELKRHIRHRILLADDERESSRGRGRRGGGEVSRRRDGRGPLLSR 269
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILY 236
+ + L +LPAI FIF+R GCDAA+ Q L LL E++EV+ + +R L
Sbjct: 270 PNLVARLDREGLLPAIGFIFSRAGCDAALAQCLRSGIALLTPEEVAEVDAVVDRRLTELS 329
Query: 237 PDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
P ++ GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMP
Sbjct: 330 PSDADVLGVQEWREGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMP 389
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE L
Sbjct: 390 ARSVVLERLVKYNGESHVDLTPGEFTQLTGRAGRRGIDIEGHAVVVWTPEVVPEEVAGLA 449
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGN 411
A PL S F+ Y M +NLL GR L+ AR+L+ +SF
Sbjct: 450 GARTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLHRSFAQ 489
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEISDDA 443
+ ++ +L + Q+ L E++ A
Sbjct: 490 FQADRSVVGQARKLHESQRALRKLDGELARAA 521
>gi|418474050|ref|ZP_13043578.1| helicase [Streptomyces coelicoflavus ZG0656]
gi|371545339|gb|EHN73971.1| helicase [Streptomyces coelicoflavus ZG0656]
Length = 950
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 204/404 (50%), Gaps = 52/404 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E H + ++ + +++ E +P Y+D
Sbjct: 216 TQVIVSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--R 272
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR + K AD + + + P+VI+ L S +LPAI FI
Sbjct: 273 RRGRAMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFI 317
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R GC+AAVQ L DE V ++ P RE ++GL
Sbjct: 318 FSRAGCEAAVQQCLYAGLRLNDEGARERVRTLVEERTASIP---REDLHVLGYYEWLEGL 374
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 375 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 434
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 435 HADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFRPSYN 494
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
M +NL+ Q GR +R+L+E SF +
Sbjct: 495 MAVNLVE-----------------QFGR--HRSRELLETSFAQF 519
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 23/250 (9%)
Query: 678 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 737
++ARL+K I R D ++ E + RL + +L +RIE + + F RI
Sbjct: 704 EIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSQLERRIEGRTNTIARTFDRI 761
Query: 738 SNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796
++ E LD + + G+ A + GE +L + LR + L PA+LAA ++L
Sbjct: 762 VALLTE---LDYLRGDEVTEHGKRLARLYGELDLLASECLREGVWEGLSPAELAACVSAL 818
Query: 797 VSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF-LELQEKHGVEIPCC 847
V E KV + +++ E + + LD F + E G P
Sbjct: 819 VYESRAADDAMAPKVPSGRAKAALGE----TVRIWGRLDALEEDFRISQTEGVGQREP-- 872
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI-PKLPDVDQRLQKN 906
D F+ WASG E++ + + GD R ++ ID+L QI P + KN
Sbjct: 873 -DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLGQIAAAAPGAGSTVPKN 931
Query: 907 AVDASNVMDR 916
A A + + R
Sbjct: 932 ARKAVDELLR 941
>gi|297195384|ref|ZP_06912782.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|197719246|gb|EDY63154.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 942
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 204/408 (50%), Gaps = 39/408 (9%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQSLMGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE+I S RPVPL + + L +E+ H R ++ EV P
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEETDHGGRGVA-------RREVNPD 246
Query: 134 KDGGSRRRNSRKH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+R NSR + D +V + + + I +VID L + +
Sbjct: 247 LVRLARMENSRTYNPRDRRRGKMVREA-DRERERRQRSRIWTPARSEVID---RLDAEGL 302
Query: 192 LPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA---- 244
LPAI FIF+R GC+AAVQ L DE EV E+ R + + +
Sbjct: 303 LPAITFIFSRAGCEAAVQQCLYAGLRLNDEDARREVREIVEDRTASIPGEDLHVLGYYEW 362
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 363 LEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKW 422
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 423 NGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPEALAGLAGTRTYPLRSSFK 482
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL Q GR +R+L+E SF +
Sbjct: 483 PSYNMAVNLTQ-----------------QFGR--HRSRELLETSFAQF 511
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 723 ERYFRLQRDTRQLERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEDGKRLARLYG 780
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 818
E +L + LR + L PA+LAA ++LV E KV K ++ E
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQSDDAVAPKVPAGKAKVALAE---- 836
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F + E G P D F+ WAS E++ + + G
Sbjct: 837 MVRIWGRLDALEEEFRINQAEGVGQREP---DLGFAWAAHQWASDKGLDEVLGEVGMPAG 893
Query: 878 DLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 916
D R ++ ID+L QI P + + KNA A + + R
Sbjct: 894 DFVRWCKQVIDVLGQIAAAAPRENSTVSKNARKAVDALLR 933
>gi|409358499|ref|ZP_11236862.1| ATP-dependent helicase [Dietzia alimentaria 72]
Length = 886
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 214/451 (47%), Gaps = 72/451 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V MV + L D+D +V+DE+HYL D SRG VWEEII+ ++++ LS
Sbjct: 111 IVVMTTEVLRNMVYGGTYALHDLDCVVMDEIHYLGDRSRGVVWEEIILTLDPAIRLVGLS 170
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
AT++N DEL WI +I G T ++ S RRPVPL T L+P
Sbjct: 171 ATLSNTDELGDWITEIRGDTAVVISDRRPVPLAHMLYTDGDLVP---------------- 214
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
V+ D R R G H + A R+Q + D
Sbjct: 215 --------VRAAADNRRRVRG----------------GYHD---ERVAARPRAQWARRQD 247
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-LDECE-----MSEVELALKRFRIL 235
+ HL +LPAI+F+F+R GCD AV + L L E S V+ A
Sbjct: 248 VIEHLDDAHLLPAIYFVFSRAGCDGAVSQMRRARLRLTTGEESRRIASHVDEACAAVPQH 307
Query: 236 YPDAVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
DA+ + + GL+ G+AAHHAG LP++++ +EELF GL+KVVFATETLA GI+MPAR
Sbjct: 308 DLDALDYSSFRAGLVSGIAAHHAGMLPLFRTVVEELFSAGLIKVVFATETLALGIHMPAR 367
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
VL +K LT+ E Q+ GRAGRRGID +G V++ P + L+
Sbjct: 368 AVVLEKTTKFNGDTHAMLTAAEYSQITGRAGRRGIDTKGTAVVLDQPDLDLDALSALVDT 427
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F Y M +NL+ R +EEA L+ +SF +
Sbjct: 428 PRFPLYSAFAPDYSMAVNLV-------------------EQRGVEEATSLIGRSFAQFQT 468
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAID 445
+++ + + E D + + + + D
Sbjct: 469 DRTLVSRSRAIERRADERDRMRASLEEAGGD 499
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 27/225 (12%)
Query: 699 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL- 757
+D + E+ R A +T +E S + F RI ++ L+ + +
Sbjct: 661 IDKLARLHERWARAHADVVTMTGEVESDSDSLARRFRRIVKLLEHLGYLEESDGSLRATE 720
Query: 758 -GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
G A + E +L++A LR + L PA LAAV A++V+ ++ S++ PS
Sbjct: 721 AGNLLAGVHTEQDLFVAECLRRGVWRGLDPAGLAAVIATVVAHP------RSESAVRAPS 774
Query: 817 TTVINVINVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASG--------LTW 865
+ LDE + +++ H + LD + ++ W SG +W
Sbjct: 775 DETLRA--ALDETERVATDVAGVEQAHRLPSTPDLDPGLAPVLHHWVSGGALASILAASW 832
Query: 866 REMMMDCALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQKNAV 908
+E L GD R R +DLLAQ+ ++ P+V R ++AV
Sbjct: 833 QE---GVELTAGDFVRSARLVMDLLAQVAQVAEPEV-ARTARSAV 873
>gi|374991250|ref|YP_004966745.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
gi|297161902|gb|ADI11614.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
Length = 942
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 165/508 (32%), Positives = 242/508 (47%), Gaps = 69/508 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQSLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK-----GKHMNRKLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +EK G+ R+++ + ++L+
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEKSGQGDGQVGRREVNPDLVRLARM 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E G +RR NN+ + + + + I P+VI+ L +
Sbjct: 254 ENTRPSFGRDKRRGR--------NNMREA--DRERERRQRSRIWTPGRPEVIE---RLDA 300
Query: 189 RDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-- 244
+LPAI FIF+R GC+AAVQ L DE + V ++ PD
Sbjct: 301 EGLLPAITFIFSRAGCEAAVQQCLYAGLRLNDEAARARVRSIVEERTSGIPDEDLHVLGY 360
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 361 FEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKL 420
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K +T E Q+ GRAGRRGID GH V++ L PL S
Sbjct: 421 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLRS 480
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
F SY M +NL++ Q G +R+L+E SF + ++
Sbjct: 481 SFKPSYNMAVNLVS-----------------QFG--WHRSRELLETSFAQFQADKAVVGI 521
Query: 422 KDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 477
++ + ++ +T + D + E A L+ +LK + TEL
Sbjct: 522 SRQVQRNEEGLRGYRASMTCHLGD---------------FDEYARLRRDLKDRE---TEL 563
Query: 478 RRRMELKRFSALKDILKDFENG---HLP 502
++ +R A D L+ G H+P
Sbjct: 564 AKQGVAQRRVAAADALEKLRPGDVIHVP 591
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 18/242 (7%)
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H H + T++ARL+ + R + D ++ E + RL +++L
Sbjct: 679 HHEMRRHRKERSAAADDTEIARLRATL-RAHPCHGCDEREDHARWAE-RYHRLLRDTRQL 736
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L + + + G+ A + GE +L + LR
Sbjct: 737 ERRIEGRTNTIARTFDRICALLSELGYL--SGEEVTDDGKRLARLYGELDLLASECLREG 794
Query: 780 ILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
+ L PA+LAA ++LV E K+ + ++ E + + D+H+
Sbjct: 795 VWEGLAPAELAACASALVYEARAADDAMPPKLPAGRAKGALGEMVRIWGRLDALEDDHK- 853
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
++ E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 854 --IKQAEGVGQREP---DLGFAWAAYRWASGHGLDELLREVDMPAGDFVRWCKQVIDVLG 908
Query: 892 QI 893
QI
Sbjct: 909 QI 910
>gi|315656721|ref|ZP_07909608.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315492676|gb|EFU82280.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 816
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 160/433 (36%), Positives = 217/433 (50%), Gaps = 73/433 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ + + L D+ +V+DEVHYLSD RG VWEEIII+ V++I LSA
Sbjct: 144 IIVMTTEVLRNMIYAAAPLADLGYVVMDEVHYLSDHFRGPVWEEIIIHLDAAVRLISLSA 203
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STKTALLPLL--DEKGKHMNRKLS 119
T++NA+ A W+ + G T +I++S RPVPL + S +LPL E G H+NR L
Sbjct: 204 TISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISASGEILPLFAKGEVGGHLNRAL- 262
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
L + +V P + RR + + A+ RS
Sbjct: 263 ---LAQAAQQVMPRRGRMPRRIRADR-----------------------PAVARS----- 291
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-------LDECEMSEVELALKRF 232
L RD+LPAI FIF+R+GC+ A + D L D+ + EVE L F
Sbjct: 292 ------LEQRDLLPAIVFIFSRQGCNDAAAQVFDAGLRFTTPQEADQIRL-EVETTLAGF 344
Query: 233 RILYPDAVREPA-IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
A+ + L G+A HHAG LPI K E LF +GL+++VFATETLA GINM
Sbjct: 345 SQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESLFAKGLIRLVFATETLALGINM 404
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PART VL SL+K R LT E Q+ GRAGRRGID+ GH + + + L
Sbjct: 405 PARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGIDSVGHALTLMEVKNPPQLLANL 464
Query: 352 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F ++ M +NLLA +LE A++ VE+SF
Sbjct: 465 ASQQTYPLHSAFVPTFNMAVNLLART-------------------TLEGAKETVEKSFAQ 505
Query: 412 YV--GSNVMLAAK 422
YV GS+ L A+
Sbjct: 506 YVALGSSRKLFAQ 518
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 716 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 774
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 775 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
LR + DL A LA +VC + G RL E S + + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINF 725
Query: 832 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 892 QIPKL 896
Q+ KL
Sbjct: 786 QLRKL 790
>gi|453365973|dbj|GAC78307.1| putative helicase [Gordonia malaquae NBRC 108250]
Length = 919
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 241/498 (48%), Gaps = 76/498 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ + V+++ LS
Sbjct: 109 VVVMTTEVLRNMIYADSAALVGLSHVVMDEVHFLADRFRGAVWEEVILGLDQSVRVVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK-------HM 114
ATV+NA+E WI + G T +I RPVPL + + L D +G+ +
Sbjct: 169 ATVSNAEEFGDWITTVRGDTAVIVDEHRPVPLHQHMLVGNRMFELFDRRGRGTEKGKRQV 228
Query: 115 NRKLS--LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172
N +LS + + LS V Y+D SR R R + N
Sbjct: 229 NSELSRYIKHRMLSPDAVGGYEDRLSRERRRRGNRTGGVNR------------------- 269
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV----- 225
P++I +L + +LPAI FIF+R GC+ A+ D +LL+ E+++V
Sbjct: 270 ----PRMI---ANLEAEGLLPAIDFIFSRAGCEGALAQCLRSDLHLLEPDEVAKVDAVVD 322
Query: 226 ----ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
ELA +L D R L +G AAHHAG LP ++ +EELF GL+KVVFA
Sbjct: 323 AHLAELAPGDSDVLGVDDWR----WALRRGFAAHHAGMLPTFRQAVEELFSLGLIKVVFA 378
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPAR+ VL L K + LT E Q+ GRAGRRGID GH V++ TP
Sbjct: 379 TETLALGINMPARSVVLERLVKYNGESHVDLTPGEYTQLTGRAGRRGIDVEGHAVVIWTP 438
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
E L A PL S F Y M +NL+ D + ++ +
Sbjct: 439 EVQPERVAGLAGARTFPLRSSFAPEYNMAMNLI------------DRL-------GVDGS 479
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMA 461
R L+ QSF + ++ +L + L +EI A R + + E
Sbjct: 480 RALLRQSFAQFQTDRSVVGQARQLDNADRTLRKLNNEIDAAA----GRSGIDPERFTEYV 535
Query: 462 NLQEELKAEKRFRTELRR 479
L+E+++ ++R + +RR
Sbjct: 536 GLREDIRRKERAQKFVRR 553
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV------SEGIKVRLWK 807
+ P G I E++L +A +R + L P+ LAAV +S++ S G V
Sbjct: 745 VTPTGAVLRRIYSESDLLVAECIRAGVWNGLSPSDLAAVVSSVLFVSRRESYGAGVDSMP 804
Query: 808 NNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 867
N ++ + T I V + +Q++HGV D+ F V AWASG + RE
Sbjct: 805 GNPAMRDALTGTIQVWEATN-------RVQDRHGVVQTREPDTGFCAAVSAWASGRSLRE 857
Query: 868 MMMDCA-----LDDGDLARLLRRTIDLLAQI 893
+ L GD R R+ IDLL QI
Sbjct: 858 ALGAAGSQGNLLSPGDFVRWNRQVIDLLEQI 888
>gi|404256704|ref|ZP_10960036.1| putative helicase [Gordonia namibiensis NBRC 108229]
gi|403404779|dbj|GAB98445.1| putative helicase [Gordonia namibiensis NBRC 108229]
Length = 942
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 228/452 (50%), Gaps = 44/452 (9%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 IVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + + L D + +
Sbjct: 161 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADR---- 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-- 179
+ S V P +R+ R + + +S G+ + R + P +
Sbjct: 217 --KGSRPRVNP-----ELKRHIRHRILLAEDERESSRGRGRRGGGGQPRRRDGRGPLLSR 269
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILY 236
+ + L +LPAI FIF+R GCDAA+ Q L LL E +EV+ + +R L
Sbjct: 270 PNLVGRLDREGLLPAIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELS 329
Query: 237 PDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
P ++ GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMP
Sbjct: 330 PTDADVLGVQEWREGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMP 389
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE L
Sbjct: 390 ARSVVLERLVKYNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLA 449
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGN 411
A PL S F+ Y M +NLL GR L+ AR+L+ +SF
Sbjct: 450 GARTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLHRSFAQ 489
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEISDDA 443
+ ++ +L + Q+ L E++ A
Sbjct: 490 FQADRSVVGLARKLHESQRALRKLDGELARAA 521
>gi|291450457|ref|ZP_06589847.1| helicase [Streptomyces albus J1074]
gi|421740794|ref|ZP_16179025.1| superfamily II RNA helicase [Streptomyces sp. SM8]
gi|291353406|gb|EFE80308.1| helicase [Streptomyces albus J1074]
gi|406690789|gb|EKC94579.1| superfamily II RNA helicase [Streptomyces sp. SM8]
Length = 935
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 232/492 (47%), Gaps = 58/492 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G
Sbjct: 141 LTGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T++I S RPVPL + + L +E G+ + ++ + L+++ E RR
Sbjct: 201 TDVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGAKKAVNPDLLRMARLESSRPTGPKDRR 259
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R S+ P+VI+ L + ++LPAI FIF+
Sbjct: 260 RGRNMREADRERERRQRSRTWTPSR-----------PEVIE---RLDAENLLPAITFIFS 305
Query: 201 RRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVA 253
R GC+AAVQ L D+ S V ++ PD ++GL +G+A
Sbjct: 306 RAGCEAAVQQCLYAGLRLNDDAARSAVREIVEERTAAIPDEDLHVLGYFEWLEGLERGIA 365
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 366 AHHAGMLPTFKEVVEELFLRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADIT 425
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL
Sbjct: 426 PGEYTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNL 485
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ Q GR +R+L+E SF + ++ ++ + ++ +
Sbjct: 486 VH-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRNEEGLE 526
Query: 434 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 493
+ ++ D ++E L+ ELK + TEL R+ +R + L
Sbjct: 527 GYAASMTCHLGD-----------FEEYGRLRRELKDRE---TELARQGAGQRRAEAAGAL 572
Query: 494 KDFENG---HLP 502
+ G H+P
Sbjct: 573 EKLRPGDIIHVP 584
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 15/213 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK +++L +RIE + + F RI N++ E L N + G + + G
Sbjct: 717 ERYHRLKRDTRQLERRIEGRTNTIARTFDRIVNLLTELGYLRGNE--VTEDGRRLSRLYG 774
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L + LR + L PA+LAA ++LV E R + PS + + +
Sbjct: 775 ELDLLASECLREGVWEGLGPAELAACVSALVFE---ARQADDAVVPKLPSGAAKSALGEM 831
Query: 827 DEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
L+E+HG+ + D F+ WASG ++ + + GD R
Sbjct: 832 VRIWGRLDALEEQHGISQTEGVGQREPDLGFAWAAYMWASGKGLDAVLREAEMPAGDFVR 891
Query: 882 LLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 910
++ ID+L QI P+ V R + AVDA
Sbjct: 892 WCKQVIDVLGQIAAAAPEGSTV-ARSARKAVDA 923
>gi|284991142|ref|YP_003409696.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064387|gb|ADB75325.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 951
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 202/401 (50%), Gaps = 53/401 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ +ES D + +V+DEVHYL+D RG VWEE+II+ P+ V ++ LS
Sbjct: 117 VVVMTTEVLRNMLYAESPAIDGLGYVVMDEVHYLADRFRGAVWEEVIIHLPQSVTLVSLS 176
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM---NRKL 118
ATV+NA+E A W+ + G TE++ S RP+PL W +HM NR
Sbjct: 177 ATVSNAEEFADWLVTVRGHTEVVVSEVRPIPL-W----------------QHMLVGNRVF 219
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSR-KHADMNSNNIVTSFGQHQLSKNSINAIR----- 172
L L+ + + D R +++R + A + +V +H+ ++
Sbjct: 220 DLFSLRPAAHAAEQGDD--PRGQSTRERGASVVDPELVRYVREHERRMDTWGGGNGGSRR 277
Query: 173 -------RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMS 223
R + P D + L +LPAI F+F+R GCDAAV L DE E S
Sbjct: 278 ERDWHKPRYKPPARADVIERLDRSGLLPAITFVFSRNGCDAAVDQCLRAGLRLTDEHERS 337
Query: 224 EVELALKRFRILYPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 274
E+ + P+ RE GLL G+AAHHAG +P +K +EE F RG
Sbjct: 338 EIAAIIDERTGSLPEEDLHVLGFWEWRE----GLLAGLAAHHAGLVPAFKETVEECFVRG 393
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
LVK VFATETLA GINMPART VL L K + +T E Q+ GRAGRRGID GH
Sbjct: 394 LVKAVFATETLALGINMPARTVVLERLVKWNGEAHVDVTPGEYTQLTGRAGRRGIDVEGH 453
Query: 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
V+V P L PL S F SY M +NL++
Sbjct: 454 AVVVWAPGMDPSVVAGLASTRTYPLKSSFRPSYNMAVNLVS 494
>gi|117928413|ref|YP_872964.1| DSH domain-containing protein [Acidothermus cellulolyticus 11B]
gi|117648876|gb|ABK52978.1| DSH domain protein [Acidothermus cellulolyticus 11B]
Length = 906
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 229/483 (47%), Gaps = 75/483 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL D RG VWEE+II P+ V+++ LSATV+NA+E W
Sbjct: 136 LYAGSSTLTGLGYVVMDEVHYLGDRFRGGVWEEVIINLPESVRLVALSATVSNAEEFGEW 195
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE+I RPVPL + L L E R+++ + ++ + +
Sbjct: 196 LITVRGATEVIVDEHRPVPLWQHMLVGHRLFDLFVEVDG--ERRVNPHLIRATQEAARRR 253
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+ +RR SR+H RR ++ + L ++ +LP
Sbjct: 254 QLAETRRHRSRQHG------------------------RRRPTASRVEIVERLDAQGLLP 289
Query: 194 AIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE-LALKRFRILYPDAVREPA--- 244
AI FIF+R GCD AV E+C L E EV+ +A R + +R
Sbjct: 290 AIIFIFSRNGCDQAV---EECLRSGLRLNRPEEADEVQAIAEARVAGIADGDLRALGYGT 346
Query: 245 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
++GL +G+AAHHAG LPI+K +EELF GLVKVVFATETLA GINMPART VL L K
Sbjct: 347 WVEGLRRGIAAHHAGMLPIFKETVEELFAAGLVKVVFATETLALGINMPARTVVLERLIK 406
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----P 358
+T E Q+ GRAGRRGID GH V+ AE+ AG+ P
Sbjct: 407 WNGEEHTPVTPGEYTQLTGRAGRRGIDVEGHAVVCW-----AEDVDPGAVAGLASRRTYP 461
Query: 359 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 418
L S F SY M +NL+ Q GR E A L+E SF + +
Sbjct: 462 LRSSFRPSYNMAVNLVG-----------------QVGR--ERAHALLEASFAQFQADRAV 502
Query: 419 LAAKDE-------LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEK 471
+ + L + Q+ + ++ A R+ + AA +E A L+ AE
Sbjct: 503 VGLTRQIRRNEATLAEYQRAMQCHLGDFAEYAALRRELSDVEAAASRETAQLRRAAAAES 562
Query: 472 RFR 474
R
Sbjct: 563 LLR 565
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 19/210 (9%)
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L +R+E S + F R+ +V+ + L + + G A + E +L A LR
Sbjct: 708 LRRRVEGRTGSLARTFDRVCDVLGDLGYL--AGEDVTEDGRRLARLYTELDLVAAECLRR 765
Query: 779 KILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+ L PA+LA A LV E VRL + E I+V L E
Sbjct: 766 GVWSGLTPAELAGAVAVLVYEPREDEPAVVRL--PAGRLAEACARTIDVWRDLTE----- 818
Query: 834 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
++++H + +F WA G ++++ + GD R R+ +DLL QI
Sbjct: 819 --VEQRHRLNFLREPSPRFVTAAYRWARGADLETILVEQDMSAGDFVRWTRQLVDLLGQI 876
Query: 894 PKLPDVDQRLQKNAVDAS---NVMDRPPIS 920
+ D D R A S V+D P++
Sbjct: 877 EQAADGDLRAVAAAAAGSLRRGVVDYTPVA 906
>gi|332670459|ref|YP_004453467.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332339497|gb|AEE46080.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 937
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 206/404 (50%), Gaps = 50/404 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYL+D RG VWEE+II+ P +VQ++ LSATV+NA+E W+ + G
Sbjct: 142 LLGLGFVVMDEVHYLADRFRGPVWEEVIIHLPDDVQLVSLSATVSNAEEFGDWLATVRGD 201
Query: 81 TELITSSRRPVPLTWYFSTKTALLPL----LDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
T ++ S RPVPL + + LL L +D ++ ++ + +QL
Sbjct: 202 TAVVVSEHRPVPLGQHVLVRGDLLDLYAGHVDPTDPGVDPPINPDLVQLL---------- 251
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAI 195
RR + + + R + V+D L RD +LPAI
Sbjct: 252 ---RRTDGPPVRRGPGDRGYRGRGGHRPGSGVG--RPTPRFAVVDAL----DRDGLLPAI 302
Query: 196 WFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALK-RFRILYPDAVREPA----IKGL 248
FIF+R GC+ AVQ L D E + + ++ R + P+ + ++ L
Sbjct: 303 VFIFSRAGCEGAVQQCLAAGVRLTDPAEQATIRRVVEERCAAVPPEDLDVLGYWDLLEAL 362
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+GVAAHHAG LP++K +E+LF RGLVKVVFATETLA GINMPAR+ VL L K S
Sbjct: 363 TRGVAAHHAGMLPLFKETVEDLFSRGLVKVVFATETLALGINMPARSVVLEKLVKWDGSN 422
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ +T E Q+ GRAGRRGID GH V+V P + L + PL S F +Y
Sbjct: 423 HVDVTPGEYTQLTGRAGRRGIDTEGHAVVVAHPGLDPVQLAGLASKRLYPLRSSFRPTYN 482
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
M +NL+A Q GR+ AR+++E SF +
Sbjct: 483 MSVNLVA-----------------QVGRA--RAREVLETSFAQF 507
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETR--ALDINTQVIFPLGETAAAI 764
E+ +RL+ L +RIE S F RI +V+ A + + G+ +
Sbjct: 720 ERWERLRGEHDALVRRIEGRTGSIAVVFDRICDVLARLGYVARTDDGLAVTDDGQWLRRL 779
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
EN+L LA LR + +L P QLAA ++LV + ++ P +
Sbjct: 780 YAENDLLLAECLRRGLWDELDPPQLAAAVSTLVYRSRR----EDQGEPRVPGGPASRLGV 835
Query: 825 VLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
LD ++ EL++ + +E LD V W++G + ++ L GD R
Sbjct: 836 ALDATVRAWSELEDLEAANRLETTVPLDLGLVEAVHRWSAGRSLDAVLRGAELSAGDFVR 895
Query: 882 LLRRTIDLLAQIPK 895
++ ID+L Q+ K
Sbjct: 896 WCKQVIDVLDQVAK 909
>gi|363420764|ref|ZP_09308855.1| ATP-dependent RNA helicase [Rhodococcus pyridinivorans AK37]
gi|359735431|gb|EHK84392.1| ATP-dependent RNA helicase [Rhodococcus pyridinivorans AK37]
Length = 766
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 203/422 (48%), Gaps = 50/422 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE I+ P +V++ LSATV+NA+E GW+ + G ++
Sbjct: 131 VVMDEVHYLADRERGAVWEEAILSLPDDVRLTSLSATVSNAEEFGGWLRGVRGDLAVVVE 190
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPLT + L LL G ++ L E P
Sbjct: 191 ETRPVPLTQHMLAGGRLFDLLSPSGT-VDETLERYIAHRQLVEAAPGP------------ 237
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
T G+ + + +P+V+ L + +LPAIWF F+R GCD
Sbjct: 238 --------ATGRGRRRRRARGAPGPAGADLPEVV---ARLEAEQLLPAIWFRFSRNGCDG 286
Query: 207 AV-QYLE-DCNLLDECEMSEVELALKRFRILYP----DAVREPA-IKGLLKGVAAHHAGC 259
AV + LE L + +++E+ R P DAV ++GL +G AAHHAG
Sbjct: 287 AVAECLESSVRLTEAADVAEIRAVADRHTAALPPADLDAVGHAEWLEGLERGFAAHHAGL 346
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
+P ++ +EELF RGLV+VVFATETLA G+NMPART VL L K TA G ++L+ E Q
Sbjct: 347 IPAFRHTVEELFARGLVRVVFATETLAVGVNMPARTVVLERLVKPTADGPVRLSPGEYTQ 406
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ GRAGRRGID GH V++ +P L A PL S Y +NL+
Sbjct: 407 LTGRAGRRGIDVEGHAVVLWSPEAAPATVAGLAGARSYPLHSSLRVGYNTAVNLV----- 461
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
AGR + +R+ + +SF + + A D + L +E+
Sbjct: 462 --------------AGRGIPGSREFLRRSFAQFQAERSVAALTDAVRANTTALRDLDTEL 507
Query: 440 SD 441
D
Sbjct: 508 GD 509
>gi|409392272|ref|ZP_11243853.1| putative helicase [Gordonia rubripertincta NBRC 101908]
gi|403197872|dbj|GAB87087.1| putative helicase [Gordonia rubripertincta NBRC 101908]
Length = 942
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 220/446 (49%), Gaps = 40/446 (8%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 IVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + + L D + +
Sbjct: 161 ATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADR---- 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ S V P R R + +S+ G + P ++
Sbjct: 217 --KGSRPRVNPELKRHIRHRILLAEDERDSSRGRGRRGGGGQPRRRDGRGPLLSRPNLVG 274
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILYPD 238
L +LPAI FIF+R GCDAA+ Q L LL E +EV+ + +R L P
Sbjct: 275 ---RLDREGLLPAIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELSPT 331
Query: 239 AVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
++ GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR
Sbjct: 332 DADVLGVQEWREGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMPAR 391
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE L A
Sbjct: 392 SVVLERLVKYNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGA 451
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYV 413
PL S F+ Y M +NLL GR L+ AR+L+ +SF +
Sbjct: 452 RTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLHRSFAQFQ 491
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEI 439
++ +L + Q+ L E+
Sbjct: 492 ADRSVVGLARKLHESQRALRKLDGEL 517
>gi|254385035|ref|ZP_05000369.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
gi|194343914|gb|EDX24880.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
Length = 717
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 149/388 (38%), Positives = 200/388 (51%), Gaps = 35/388 (9%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V + + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LS
Sbjct: 134 VVVMTTEVLRNMLYAGSQALRGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLS 193
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T++I S RPVPL + + L +E+ H R +
Sbjct: 194 ATVSNAEEFGDWLDTVRGDTDVIVSEERPVPLWQHVMAGRRVYDLFEEESDHGGRGSA-- 251
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
EV P +R NSR + D +V + + S + I P+V
Sbjct: 252 -----RREVNPDLLRMAREENSRTYNPKDRRRGKMVRE-ADRERERRSRSRIWTPSRPEV 305
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
I L + D+LPAI FIF+R GC+AAVQ C L ++ E LK I+
Sbjct: 306 I---ARLDNDDLLPAINFIFSRAGCEAAVQ---QC-LYAGLRLNNEEARLKVRGIVEERT 358
Query: 240 VREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
P ++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA G
Sbjct: 359 ASIPTEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALG 418
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART +L L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 419 INMPARTVILEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPV 476
Query: 349 CKLLFAGVE--PLVSQFTASYGMVLNLL 374
AG PL S F SY M +NL+
Sbjct: 477 GLAGLAGTRTYPLRSSFKPSYNMAVNLV 504
>gi|359144147|ref|ZP_09178216.1| helicase [Streptomyces sp. S4]
Length = 935
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 232/492 (47%), Gaps = 58/492 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G
Sbjct: 141 LTGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T++I S RPVPL + + L +E G+ + ++ + L+++ E RR
Sbjct: 201 TDVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGAKKAVNPDLLRMARLESSRPTGPKDRR 259
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R S+ P+VI+ L + ++LPAI FIF+
Sbjct: 260 RGRNMREADRERERRQRSRTWTPSR-----------PEVIE---RLDAENLLPAITFIFS 305
Query: 201 RRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVA 253
R GC+AAVQ L D+ S V ++ PD ++GL +G+A
Sbjct: 306 RAGCEAAVQQCLYAGLRLNDDAARSAVREIVEERTAAIPDEDLHVLGYFEWLEGLERGIA 365
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 366 AHHAGMLPTFKEVVEELFLRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADIT 425
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL
Sbjct: 426 PGEYTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNL 485
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ Q GR +R+L+E SF + ++ ++ + ++ +
Sbjct: 486 VH-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRNEEGLE 526
Query: 434 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 493
+ ++ D ++E L+ ELK + TEL R+ +R + L
Sbjct: 527 GYAASMTCHLGD-----------FEEYGRLRRELKDRE---TELARQGAGQRRAEAAGAL 572
Query: 494 KDFENG---HLP 502
+ G H+P
Sbjct: 573 EKLRPGDIIHVP 584
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK +++L +RIE + + F RI N++ E L N + G + + G
Sbjct: 717 ERYHRLKRDTRQLERRIEGRTNTIARTFDRIVNLLTELGYLRGNE--VTEDGRRLSRLYG 774
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L + LR + L PA+LAA ++LV E R + PS + +
Sbjct: 775 ELDLLASECLREGVWEGLGPAELAACVSALVFE---ARQADDAVVPKLPSGAAKAALGEM 831
Query: 827 DEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
L+E+HG+ + D F+ WASG ++ + + GD R
Sbjct: 832 VRIWGRLDALEEQHGISQTEGVGQREPDLGFAWAAYMWASGKGLDAVLREAEMPAGDFVR 891
Query: 882 LLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 910
++ ID+L QI P+ V R + AVDA
Sbjct: 892 WCKQVIDVLGQIAAAAPEGSTV-ARSARKAVDA 923
>gi|120404412|ref|YP_954241.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119957230|gb|ABM14235.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 929
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 154/428 (35%), Positives = 211/428 (49%), Gaps = 67/428 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LS
Sbjct: 111 VVVMTTEVLRNMLYADSRALQGLSYVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLS 170
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSL 120
ATV+NA+E GWI + G T ++ RPVPL + LL L D + R L +
Sbjct: 171 ATVSNAEEFGGWIKTVRGDTTVVVDEHRPVPLWQHVMVGKRLLDLFDYRASGPAGRNLLV 230
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ L + RR + + D S L + A +VI
Sbjct: 231 DPELLRHI---------AHRREAERLTDWQPRGRGRSGRPSGLYRTPGRA-------EVI 274
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
+ L ++LPAI FIF+R GCDAAV+ +C S + L R D V
Sbjct: 275 NVLAQ---DNLLPAITFIFSRAGCDAAVK---------QCLRSSLRLTTDEERARIADIV 322
Query: 241 -REPA---------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
R A +GLL+G+AAHHAG LP+++ +EELF GLVK VFATET
Sbjct: 323 DRRTADLNDSDLIVLDFHEWREGLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATET 382
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 383 LALGINMPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVD 442
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F +Y M +NL+ Q G + +A +L
Sbjct: 443 PAEVAGLASTRTFPLRSSFAPTYNMTINLVH-----------------QMGPA--QAHQL 483
Query: 405 VEQSFGNY 412
+E+SF Y
Sbjct: 484 LERSFAQY 491
>gi|384566291|ref|ZP_10013395.1| superfamily II RNA helicase [Saccharomonospora glauca K62]
gi|384522145|gb|EIE99340.1| superfamily II RNA helicase [Saccharomonospora glauca K62]
Length = 929
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 151/424 (35%), Positives = 211/424 (49%), Gaps = 59/424 (13%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V + + + L D+ +V+DEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 133 QIVVMTTEVLRNMLYAGSTALDDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGL 192
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ ++ G T ++ RPVPL + +L L G+H +
Sbjct: 193 SATVSNAEEFGEWLMEVRGDTSVVVDEHRPVPLWQHMLVGGRMLDLF--AGRHAD----T 246
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+L+ ++ +D +R HA + + + R + P +
Sbjct: 247 GEARLNPQLLRRVED------TARMHAPAGLRG--------RGRRGAPYRGPRYRPPSRV 292
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
+ + L S +LPAI FIF+R GCDAAV L ++ E A + RI+
Sbjct: 293 EIVDRLDSAGLLPAIVFIFSRAGCDAAVTQCVRSGL----RLNTPEEAEEVRRIVDERTA 348
Query: 241 REP----AIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
P A+ G L +G+AAHHAG LP +K +EELF RGLVKVVFATETLA GI
Sbjct: 349 DLPQNDLAVLGYWEWREALEQGIAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGI 408
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K + LT E Q+ GRAGRRGID GH V+V P +
Sbjct: 409 NMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVA 468
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQS 408
L PL S F Y M +NL+ GR +AR+L+EQS
Sbjct: 469 GLASTRTYPLRSSFRPGYNMAVNLV--------------------GRFGAAKARELLEQS 508
Query: 409 FGNY 412
F +
Sbjct: 509 FAQF 512
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+A +++L +++ S + F RI ++ E LD + + G + +
Sbjct: 711 ERYLRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDADGDTVTEHGRLLSRLYS 770
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + ++ ST + V
Sbjct: 771 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARRDSPAESKLPSGPVSTAWQETVRVW 830
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD-----GDLAR 881
+ +E + +H ++ D+ F+ V WA G + +++ ++ GD R
Sbjct: 831 ----TDLVEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAEMNGQELSAGDFVR 886
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 887 WSRQVVDLLDQIKDVLGKEHPVGGAAGKASRLLRR 921
>gi|384193835|ref|YP_005579581.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
gi|345282694|gb|AEN76548.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
Length = 863
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 249/526 (47%), Gaps = 73/526 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S + + ++LDEVHYL+D RG +WEE+II+ P+ V+II LS
Sbjct: 136 IVVMTTEVLRNMLYEHSTTLNALGYVILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLS 195
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPL-----LDEK 110
ATV+N ++ A WI + G T+L+ S RPVPL Y T+ L L + E+
Sbjct: 196 ATVSNVEDFADWIESVRGDTKLVVSEHRPVPLDQYVLLQKDPRTEPELFDLYCRDDMGEQ 255
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
MN +L +L E + + + R+ R+ V ++Q + +
Sbjct: 256 TVKMNARLMNRLDELDRMEARRAR-ADTHGRSERRQDRGGKRKFVRKPERYQPRRWA--- 311
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDE-------- 219
V+D L L MLPAI+F+F+R GCD AV+ + L DE
Sbjct: 312 --------VVDELNFL---GMLPAIYFVFSRNGCDEAVEQCLNAGLRLTTDEEALHIRKI 360
Query: 220 -CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
EM E +L + + L+ R L +G AAHHAG + ++K +E LF+ GL+K
Sbjct: 361 VDEMIEGQLTREDLKTLHFSQFR----YALEEGFAAHHAGMIALFKQIVERLFEEGLIKC 416
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR+ V+ L K +G + LT E Q+ GRAGRRGID G+ ++V
Sbjct: 417 VFATETLALGINMPARSVVVEKLEKYNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVV 476
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL 398
E L V PL S F A++ M +NLL N SD
Sbjct: 477 DHRDFKPETAVALSSKRVYPLHSSFKATFNMAVNLL---------NSSD----------Y 517
Query: 399 EEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR----KSRRLLSE 454
E AR ++ SF + + + + K++K + +DA D + R LS+
Sbjct: 518 ETARDTLDHSFAQWEANESAWDLEARIDKLRKAIAGYEEAMGNDAGDMVELLRIRMKLSD 577
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 500
E L+ E+ F++ R +R A LK+ E H
Sbjct: 578 LQKNERRRLKHEV-----FKSNEERSRAFRRLDAQIAQLKEQEANH 618
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 770
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 644 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 703
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 825
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 704 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 758
Query: 826 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 759 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 818
Query: 885 RTIDLLAQI 893
R D+L QI
Sbjct: 819 RIADVLQQI 827
>gi|219683807|ref|YP_002470190.1| helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|384191089|ref|YP_005576837.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192234|ref|YP_005577981.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|219621457|gb|ACL29614.1| probable helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|289178581|gb|ADC85827.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|340364971|gb|AEK30262.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 875
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 249/526 (47%), Gaps = 73/526 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S + + ++LDEVHYL+D RG +WEE+II+ P+ V+II LS
Sbjct: 148 IVVMTTEVLRNMLYEHSTTLNALGYVILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLS 207
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPL-----LDEK 110
ATV+N ++ A WI + G T+L+ S RPVPL Y T+ L L + E+
Sbjct: 208 ATVSNVEDFADWIESVRGDTKLVVSEHRPVPLDQYVLLQKDPRTEPELFDLYCRDDMGEQ 267
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
MN +L +L E + + + R+ R+ V ++Q + +
Sbjct: 268 TVKMNARLMNRLDELDRMEARRAR-ADTHGRSERRQDRGGKRKFVRKPERYQPRRWA--- 323
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDE-------- 219
V+D L L MLPAI+F+F+R GCD AV+ + L DE
Sbjct: 324 --------VVDELNFL---GMLPAIYFVFSRNGCDEAVEQCLNAGLRLTTDEEALHIRKI 372
Query: 220 -CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
EM E +L + + L+ R L +G AAHHAG + ++K +E LF+ GL+K
Sbjct: 373 VDEMIEGQLTREDLKTLHFSQFR----YALEEGFAAHHAGMIALFKQIVERLFEEGLIKC 428
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR+ V+ L K +G + LT E Q+ GRAGRRGID G+ ++V
Sbjct: 429 VFATETLALGINMPARSVVVEKLEKYNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVV 488
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL 398
E L V PL S F A++ M +NLL N SD
Sbjct: 489 DHRDFKPETAVALSSKRVYPLHSSFKATFNMAVNLL---------NSSD----------Y 529
Query: 399 EEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR----KSRRLLSE 454
E AR ++ SF + + + + K++K + +DA D + R LS+
Sbjct: 530 ETARDTLDHSFAQWEANESAWDLEARIDKLRKAIAGYEEAMGNDAGDMVELLRIRMKLSD 589
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 500
E L+ E+ F++ R +R A LK+ E H
Sbjct: 590 LQKNERRRLKHEV-----FKSNEERSRAFRRLDAQIAQLKEQEANH 630
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 770
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 656 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 715
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 825
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 716 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 770
Query: 826 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 771 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 830
Query: 885 RTIDLLAQI 893
R D+L QI
Sbjct: 831 RIADVLQQI 839
>gi|427391856|ref|ZP_18886080.1| hypothetical protein HMPREF9233_01583 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425731823|gb|EKU94636.1| hypothetical protein HMPREF9233_01583 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 879
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 192/392 (48%), Gaps = 64/392 (16%)
Query: 28 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 87
VLDEVHYLSD RG VWEE I+ P+ V+++ LSAT+AN DELA W+ + G T+LI S
Sbjct: 134 VLDEVHYLSDRDRGPVWEETILSLPEHVRLVSLSATIANTDELASWMRSVRGPTDLIVSH 193
Query: 88 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 147
RPVPL + PL D+ R L E +P R+
Sbjct: 194 TRPVPLEQSVALGKKFFPLYDDAAGSAPRPHPSLVNALRQREDEP----------PRRMG 243
Query: 148 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 207
D + I+ GQ L +R+MLPAI FIF+R+GCD A
Sbjct: 244 DKDRRRII---GQ-------------------------LANREMLPAIEFIFSRKGCDRA 275
Query: 208 VQYL--EDCNLLDECEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAHHAGCL 260
V L + L + E +++ + R R D+ R E A + L +G AHHAG
Sbjct: 276 VDALLRREVVLTTDAERAQIREEIARLRDSMDDSNRRAVGFERAAQALERGYGAHHAGVY 335
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 320
P K E+L + GL+++V+AT TLA GI+MP RT VL L++ + + LT+ E Q+
Sbjct: 336 PPLKELTEKLMEHGLLRIVYATGTLALGIDMPVRTVVLEELTRWNGTSFVDLTATEYTQL 395
Query: 321 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 380
GRAGRRG D G+ V++ AE +L VEPL+S F SY V+NLL
Sbjct: 396 IGRAGRRGKDAVGYGVVMGNSQTDAEYLAELGSGKVEPLLSAFQPSYNTVINLL------ 449
Query: 381 HLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ RS AR ++ +SF Y
Sbjct: 450 -------------SDRSYRSARDVMNRSFAQY 468
>gi|291300653|ref|YP_003511931.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290569873|gb|ADD42838.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 919
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 185/356 (51%), Gaps = 38/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G TE++ S
Sbjct: 159 VVMDEVHYLADRFRGAVWEEVIIHLPASVSLVSLSATVSNAEEFADWLVSLRGHTEVVVS 218
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L +G +EV P R+ R+
Sbjct: 219 EHRPVPLWQHIMVGRRLFDLFATEGD-------------DRTEVHP-----QLMRHIREQ 260
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ +L + +RR + P D + L S +LPAI FIF+R CDA
Sbjct: 261 -------------ERRLGYDRRGRMRRPRPPYRSDVIAKLDSEALLPAIVFIFSRAACDA 307
Query: 207 AVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVRE----PAIKGLLKGVAAHHAGC 259
AV L+ L D E +E+ +A R + + P + GL +G+AAHHAG
Sbjct: 308 AVSQCLLDGLRLTDPGEEAEIARVANARVAHISTSDLNALGYYPFLDGLQRGLAAHHAGL 367
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP++K +EELF GLVKVVFATETLA GINMPART VL L K + LT E Q
Sbjct: 368 LPVFKEIVEELFAAGLVKVVFATETLALGINMPARTVVLERLVKYNGEEHVDLTPGEYTQ 427
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
+ GRAGRRGID GH V + L PL S F+ SY M +NL+A
Sbjct: 428 LTGRAGRRGIDIEGHAVTIWGADVDPRHVAGLASTRTYPLNSSFSPSYNMAINLIA 483
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 11/217 (5%)
Query: 710 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 769
+RL + +RL ++ + S + F R+ +++ + I + + G + I E++
Sbjct: 708 QRLLSDYERLQTKVNRRSGSLARTFDRVRDMLSDYGY--IASGTVTDAGRVLSRIWSESD 765
Query: 770 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L +A +R + L +LAAV + ++ E + + S P V + +
Sbjct: 766 LLVAECVREGVWDGLSAPELAAVASIVLYESRR----DADMSPALPKGNVASAVAATLRR 821
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLR 884
+ + +HG+ + D F + WA G +++ D ++ GD R R
Sbjct: 822 FDAIHADESRHGLSLTGEPDLGFVWPMYRWARGEPLAKVLAAGDGPDGSMPAGDFVRWAR 881
Query: 885 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
+TIDLL Q+ L A+ A++ + R +++
Sbjct: 882 QTIDLLGQLASAAGPSSPLYSTALAAADAVRRGVVAD 918
>gi|183601660|ref|ZP_02963030.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|241190841|ref|YP_002968235.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196247|ref|YP_002969802.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|384195399|ref|YP_005581144.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|387820708|ref|YP_006300751.1| helicase [Bifidobacterium animalis subsp. lactis B420]
gi|387822382|ref|YP_006302331.1| helicase [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423679368|ref|ZP_17654244.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|183219266|gb|EDT89907.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|240249233|gb|ACS46173.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250801|gb|ACS47740.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793830|gb|ADG33365.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|366041479|gb|EHN17974.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|386653409|gb|AFJ16539.1| putative helicase [Bifidobacterium animalis subsp. lactis B420]
gi|386654990|gb|AFJ18119.1| putative helicase [Bifidobacterium animalis subsp. lactis Bi-07]
Length = 829
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 239/501 (47%), Gaps = 70/501 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG +WEE+II+ P+ V+II LSATV+N ++ A WI + G T+L+ S
Sbjct: 127 VILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLSATVSNVEDFADWIESVRGDTKLVVS 186
Query: 87 SRRPVPLTWYF------STKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL Y T+ L L + E+ MN +L +L E + +
Sbjct: 187 EHRPVPLDQYVLLQKDPRTEPELFDLYCRDDMGEQTVKMNARLMNRLDELDRMEARRAR- 245
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+ R+ R+ V ++Q + + V+D L L MLPAI
Sbjct: 246 ADTHGRSERRQDRGGKRKFVRKPERYQPRRWA-----------VVDELNFL---GMLPAI 291
Query: 196 WFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREP 243
+F+F+R GCD AV+ + L DE EM E +L + + L+ R
Sbjct: 292 YFVFSRNGCDEAVEQCLNAGLRLTTDEEALHIRKIVDEMIEGQLTREDLKTLHFSQFR-- 349
Query: 244 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
L +G AAHHAG + ++K +E LF+ GL+K VFATETLA GINMPAR+ V+ L K
Sbjct: 350 --YALEEGFAAHHAGMIALFKQIVERLFEEGLIKCVFATETLALGINMPARSVVVEKLEK 407
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+G + LT E Q+ GRAGRRGID G+ ++V E L V PL S F
Sbjct: 408 YNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVVDHRDFKPETAVALSSKRVYPLHSSF 467
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 423
A++ M +NLL N SD E AR ++ SF + + +
Sbjct: 468 KATFNMAVNLL---------NSSD----------YETARDTLDHSFAQWEANESAWDLEA 508
Query: 424 ELCKIQKETDVLTSEISDDAIDR----KSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
+ K++K + +DA D + R LS+ E L+ E+ F++ R
Sbjct: 509 RIDKLRKAIAGYEEAMGNDAGDMVELLRIRMKLSDLQKNERRRLKHEV-----FKSNEER 563
Query: 480 RMELKRFSALKDILKDFENGH 500
+R A LK+ E H
Sbjct: 564 SRAFRRLDAQIAQLKEQEANH 584
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 770
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 610 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 669
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 825
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 670 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 724
Query: 826 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 725 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 784
Query: 885 RTIDLLAQI 893
R D+L QI
Sbjct: 785 RIADVLQQI 793
>gi|357414385|ref|YP_004926121.1| DSH domain-containing protein [Streptomyces flavogriseus ATCC
33331]
gi|320011754|gb|ADW06604.1| DSH domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 942
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/413 (36%), Positives = 210/413 (50%), Gaps = 49/413 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQALTGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G T++I S RPVPL + + L +E+ H R ++S + ++L+
Sbjct: 194 LDTVRGDTQVIVSEHRPVPLWQHVMAGRRMYDLFEEETDHGGRGTGRREVSPDLVRLARM 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + + I P+VID L +
Sbjct: 254 ENQRGYNPRERRRGK-----------MVREADRERERRQRSRIWTPSRPEVID---RLDA 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEV-ELALKRFRILYPDAVREPA- 244
+LPAI FIF+R GC AAVQ L DE + V E+ +R + P+ +
Sbjct: 300 EGLLPAITFIFSRAGCQAAVQQCLQAGLRLNDEDKRQLVREIVEERTASIPPEDLHVLGY 359
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 360 YEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKL 419
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PL 359
K +T E Q+ GRAGRRGID GH V++ G + AG PL
Sbjct: 420 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPL 477
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 478 RSSFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 511
>gi|21220127|ref|NP_625906.1| helicase [Streptomyces coelicolor A3(2)]
gi|6119673|emb|CAB59484.1| putative helicase [Streptomyces coelicolor A3(2)]
Length = 950
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 204/404 (50%), Gaps = 52/404 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E H + ++ + +++ E +P Y+D
Sbjct: 216 TQVIVSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--R 272
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR + K AD + + + P+VI+ L S +LPAI FI
Sbjct: 273 RRGRAMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFI 317
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R GC+AAVQ L DE V ++ P RE ++GL
Sbjct: 318 FSRAGCEAAVQQCLYAGLRLNDEGARERVRALVEERTSSIP---REDLHVLGYYEWLEGL 374
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 375 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 434
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 435 HADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYN 494
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
M +NL+ Q GR +R+L+E SF +
Sbjct: 495 MAVNLVD-----------------QFGR--HRSRELLETSFAQF 519
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------T 818
GE +L + LR + L PA+LAA ++LV E R + ++ PS
Sbjct: 788 GELDLLASECLREGVWEGLSPAELAACVSALVFES---RAADDATAPKVPSGRAKAALGE 844
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
+ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 845 TVRIWGRLDALEEDFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREVEMPAG 901
Query: 878 DLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 916
D R ++ ID+L QI P + KNA A + + R
Sbjct: 902 DFVRWCKQVIDVLGQISAAAPGAGSTVPKNARKAVDELLR 941
>gi|366999174|ref|XP_003684323.1| hypothetical protein TPHA_0B02170 [Tetrapisispora phaffii CBS 4417]
gi|357522619|emb|CCE61889.1| hypothetical protein TPHA_0B02170 [Tetrapisispora phaffii CBS 4417]
Length = 1270
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 204/377 (54%), Gaps = 29/377 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 426 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 485
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDGGSR 139
+I++ +RPVPL TK L+P+++ K + + N K N ++ +TS+ K K
Sbjct: 486 YVISTPKRPVPLEISIWTKNVLVPVINPKREFLESNFKKHKNLIEGTTSD-KVQKTLSHS 544
Query: 140 RRNSRKHADMNSNNIVT-----------SFGQHQLSKNSINAIRRSQVPQ-----VIDTL 183
+ NS + V+ S G + N +RS + +ID
Sbjct: 545 KENSTRGGARGGARGVSRGGTRGSMRGGSRGAGAIGSNKSQFFKRSGPNKKTWSGIID-- 602
Query: 184 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE- 242
+LR +D+LPA+ F+F+++ C+ +L+ + E S++ + +++ RE
Sbjct: 603 -YLRGKDLLPAVIFVFSKKRCEEYADWLDAVSFCSNKEKSQIHMFIEKSITRLKKEDREL 661
Query: 243 P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
P I+ LL +G+A HH G LPI K IE LF +GL+KV+FATET A G+N+P RT +
Sbjct: 662 PQILKIRSLLERGIAVHHGGLLPIVKELIEILFSKGLIKVLFATETFAMGLNLPTRTVIF 721
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-E 357
S L K +G LT E QMAGRAGRRG+D G V+++ + K + G+
Sbjct: 722 SELQKHDVNGLRSLTPGEFTQMAGRAGRRGLDKIGTVIVMAYTEPLNQSVFKEVTLGIPT 781
Query: 358 PLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 782 KLQSQFKLTYNMILNLL 798
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 740 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
V+H T +D N V G A I EL + ++ + L D +P ++ ++ ++ + E
Sbjct: 1081 VLHRTGFIDQNQNVTLK-GRVACEINTGFELVITELILDNFLGDFEPEEIVSLLSAFIYE 1139
Query: 800 G---------IKVRLWKNNSSIYEPSTTVINVIN----VLDEHRSSFLELQEKHGVEIPC 846
G + RL K I E ++++ + + S FLE++ + G+
Sbjct: 1140 GRSRDEPPPIVTPRLIKGKQKIEEIYGRMLDIFAEEQITMTKEESEFLEMK-RFGL---- 1194
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
++ WA GL+++E+M +G + R++ R ++ Q+
Sbjct: 1195 ------INVIYEWARGLSFKEIMEISIEQEGTVVRVITRLDEICRQV 1235
>gi|289772656|ref|ZP_06532034.1| helicase [Streptomyces lividans TK24]
gi|289702855|gb|EFD70284.1| helicase [Streptomyces lividans TK24]
Length = 944
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 204/404 (50%), Gaps = 52/404 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 150 LLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 209
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E H + ++ + +++ E +P Y+D
Sbjct: 210 TQVIVSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--R 266
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR + K AD + + + P+VI+ L S +LPAI FI
Sbjct: 267 RRGRAMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFI 311
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R GC+AAVQ L DE V ++ P RE ++GL
Sbjct: 312 FSRAGCEAAVQQCLYAGLRLNDEGARERVRALVEERTSSIP---REDLHVLGYYEWLEGL 368
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 369 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 428
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 429 HADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYN 488
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
M +NL+ Q GR +R+L+E SF +
Sbjct: 489 MAVNLVD-----------------QFGR--HRSRELLETSFAQF 513
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 725 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 781
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------T 818
GE +L + LR + L PA+LAA ++LV E R + ++ PS
Sbjct: 782 GELDLLASECLREGVWEGLSPAELAACVSALVFES---RAADDATAPKVPSGRAKAALGE 838
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
+ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 839 TVRIWGRLDALEEDFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREVEMPAG 895
Query: 878 DLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 916
D R ++ ID+L QI P + KNA A + + R
Sbjct: 896 DFVRWCKQVIDVLGQISAAAPGAGSTVPKNARKAVDELLR 935
>gi|118617834|ref|YP_906166.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99]
gi|118569944|gb|ABL04695.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99]
Length = 918
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 160/428 (37%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKL 118
ATV+NA+E GWI + G T ++ RPVPL + L L D +K +R+
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTAVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAGSSRQA 223
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
+N L R R+ AD S+ + R + P
Sbjct: 224 RVNPDLL-------------RHIAHRREADRMSD--WEPRRSGRGEYGRGRRPRFYRPPP 268
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRIL 235
D + L S +LPAI F+F+R GCDAAVQ L E E +++ E+ R L
Sbjct: 269 RPDVIATLDSAGLLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDL 328
Query: 236 YPDAV--------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
D + RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 329 EDDDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 384
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAE 346
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E A+
Sbjct: 385 GINMPARTVVLERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENAD 444
Query: 347 ECCKLLFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
A PL S F SY M +NL V H+ E+A +L
Sbjct: 445 PSAVAGLASTRTFPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRL 485
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 486 LEQSFAQY 493
>gi|407983934|ref|ZP_11164571.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
gi|407374511|gb|EKF23490.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
Length = 912
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 215/424 (50%), Gaps = 60/424 (14%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + ++ L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LS
Sbjct: 106 IVVMTTEVLRNMLYANSPALHGLSYVVMDEVHFLADRMRGAVWEEVILHLPEDVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLS 119
ATV+NA+E GWI + G T ++ RPVPL + L L D + + ++KL
Sbjct: 166 ATVSNAEEFGGWIQAVRGDTTVVVDEHRPVPLWQHVMVGKRLFDLFDYRAQDPRTHKKLK 225
Query: 120 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
++ L R R+ AD + ++ + + R P+V
Sbjct: 226 VHPDLL-------------RHIAFRREADR-----MAAWQPRVRGRGRPSIYRPPSRPEV 267
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL----LDECE-MSEV------ELA 228
I TL + +LPAI FIF+R GCDAAV+ +L DE E ++E+ +L
Sbjct: 268 IATL---DNAGLLPAITFIFSRAGCDAAVKQCLRSSLRLTTADERERIAEIVDRRCADLP 324
Query: 229 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
IL RE GLL+G+AAHHAG L ++ +EELF GLVK VFATETLA G
Sbjct: 325 ESDLLILDYHEWRE----GLLRGLAAHHAGMLATFRHTVEELFVAGLVKAVFATETLALG 380
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + LT E Q+ GRAGRRGID GH V++ TP E
Sbjct: 381 INMPARTVVLERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVDPIEI 440
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408
L PL S F +Y M +NL+ Q G + +A KL+E S
Sbjct: 441 AGLASTRTFPLRSSFAPTYNMTINLVH-----------------QMGPA--QAHKLLESS 481
Query: 409 FGNY 412
F Y
Sbjct: 482 FAQY 485
>gi|403737667|ref|ZP_10950395.1| putative helicase [Austwickia chelonae NBRC 105200]
gi|403191779|dbj|GAB77165.1| putative helicase [Austwickia chelonae NBRC 105200]
Length = 946
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 216/455 (47%), Gaps = 48/455 (10%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ES L + +V+DEVHYL+D RG VWEE+II+ P V +I LS
Sbjct: 117 IVVMTTEVLRNMLYVESPDLAGLGYVVMDEVHYLADRFRGAVWEEVIIHLPDHVSVISLS 176
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+G++ G TE++ RPVPL + + L E +
Sbjct: 177 ATVSNAEEFGAWLGEVRGDTEIVVEEFRPVPLWQHMMVGHTVHDLFAETDDPRTPTHRHH 236
Query: 122 YLQLSTSEVKP-YKDG--GSRRRNSRK------HADMNSNNIVTSFGQHQLSKNSINAIR 172
+ T + P D G RR R+ + H + +S A
Sbjct: 237 HGPPQTLTINPDLLDAIIGQRRSTDRRGRLEDIGGPRGRRGKIRRRPGHPRTNHSTPAET 296
Query: 173 RSQVP-------QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMS 223
+ P VID+L +LPAI FIF+R GCDAAVQ L NL+ E +
Sbjct: 297 HPRPPGRPHSRATVIDSL---DRAGLLPAITFIFSRAGCDAAVQQLLQAGTNLIPEDQAR 353
Query: 224 EVELALK-RFRILYPDAVR----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
+ ++ R L PD + + GL +G AAHHAG LP ++ +EELF GL++
Sbjct: 354 HIHRTVEERVASLAPDDLTVLGYRDFLAGLTRGFAAHHAGMLPTFREIVEELFTAGLIRA 413
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR+ +L L K + +T E Q+ GRAGRRG+D GH V++
Sbjct: 414 VFATETLALGINMPARSVILEKLVKYNGEAHVGITPAEYTQLTGRAGRRGVDIEGHAVVL 473
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL 398
P + L PL S F + M +NL+A GR
Sbjct: 474 WNPQIDPDAVGGLASTRTYPLRSSFRPNPNMAVNLVA-----------------TFGR-- 514
Query: 399 EEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ AR ++E SF Y ++ + + Q+ D
Sbjct: 515 DRARNVLETSFAQYQADRSVVGMNRTIHQHQEALD 549
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
RL+ + L +++ S + F R+ +++ E L + GE I E +L
Sbjct: 736 RLERETAALRRKVAGRTNSIARTFDRLCDILTELGYLTDGGTTVTSAGERLRRIYNERDL 795
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
+A LR+ + L L PA+LAA+ ++LV E R +NN P+ V + + +
Sbjct: 796 LVAECLRHDLWLTLSPAELAAMVSTLVHE---PRREENNPFPTMPTAAVGEAYDAMLDLW 852
Query: 831 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 890
S + G+ D+ S ++ WA+G ++ L GD R ++ +DLL
Sbjct: 853 SGLDDRLTARGLPTTAPPDAGLSAIMHRWATGSRLESVLDGSDLAPGDFVRRCKQVVDLL 912
Query: 891 AQI 893
QI
Sbjct: 913 DQI 915
>gi|329939077|ref|ZP_08288451.1| helicase [Streptomyces griseoaurantiacus M045]
gi|329301962|gb|EGG45855.1| helicase [Streptomyces griseoaurantiacus M045]
Length = 953
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 166/497 (33%), Positives = 243/497 (48%), Gaps = 69/497 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 159 LTGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 218
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +L+ +E +P Y+D
Sbjct: 219 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGQKKAVNPDLTRLARTEAARPLYRD--- 274
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R+ R + + + S + + P+VI+ L + +LPAI FI
Sbjct: 275 -RKRGRAMREADRER----------DRRSRSRVWTPGRPEVIE---RLDAAGLLPAITFI 320
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R GC++AVQ L DE EV ++ P RE ++GL
Sbjct: 321 FSRAGCESAVQQCLYAGLRLNDEDAREEVRALVEERTASIP---REDLHVLGYYEWLEGL 377
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 378 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 437
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 438 HADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFRPSYN 497
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
M +NL+ Q GR +R+L+E SF + ++ ++ +
Sbjct: 498 MAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRN 538
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
++ D + ++ D ++E A L+ ELK + TEL R+ +R +
Sbjct: 539 EEGLDGYKASMTCHLGD-----------FEEYARLRRELKDRE---TELARQGAAQRRAE 584
Query: 489 LKDILKDFENG---HLP 502
L+ G H+P
Sbjct: 585 AAVALEKLRPGDVIHVP 601
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 666 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H +VE +++QR++ +ARL+ + R D ++ E + L+ S+ L
Sbjct: 689 HISVERHRKQRSQAADDREIARLRTAL-RAHPCHGCNDREDHARWAERYYRLLRDTSQ-L 746
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L N + G A + GE +L + LR+
Sbjct: 747 ERRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTEHGRRLARLYGELDLLASECLRDG 804
Query: 780 ILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 831
+ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 805 VWEGLGPAELAACVSALVYESRSGDDAMAPKVPSGRAKAALGE----MVRIWGRLDALEE 860
Query: 832 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 890
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 861 EFRISQTEGVGQREP---DLGFAWAAHMWASGKGLDEVLREVEMPAGDFVRWCKQVIDVL 917
Query: 891 AQI 893
QI
Sbjct: 918 GQI 920
>gi|359423041|ref|ZP_09214186.1| putative helicase [Gordonia amarae NBRC 15530]
gi|358241724|dbj|GAB03768.1| putative helicase [Gordonia amarae NBRC 15530]
Length = 948
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 206/401 (51%), Gaps = 46/401 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T +I
Sbjct: 152 VVMDEVHFLADRFRGAVWEEVILHLDPAVRVVSLSATVSNAEEFGDWIKTVRGDTTVIVD 211
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR-----RR 141
RPVPL+ + + L E H P K GG +R
Sbjct: 212 DHRPVPLSQHVLVGNRIFDLY-EHAPH-----------------GPGKKGGREVNADLKR 253
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFN 200
R N + S G+ + + R+ P V+ +L RD +LPAI FIF+
Sbjct: 254 YIRHKMLTNDDRFSDSRGRGRGRGHRGGGGPRASRPDVVASL----DRDGLLPAIMFIFS 309
Query: 201 RRGCDAAVQYLEDC--NLLDECEMSEV-ELALKRFRILYPDAVREPAIK----GLLKGVA 253
R+GCD A+ + +LL+ E++ V E+ K + P ++ GL +G A
Sbjct: 310 RKGCDGALAQCQRSRLSLLEPHEVAAVDEIVDKHLTDIAPADAEILGVEQWRAGLRRGFA 369
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP ++ +EELF GLVKVVFATETLA GINMPAR+ VL L K + LT
Sbjct: 370 AHHAGLLPTFRHAVEELFAGGLVKVVFATETLALGINMPARSVVLERLVKYNGEAHVDLT 429
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH +++ TP E+ L A PL S F Y M +NL
Sbjct: 430 PGEFTQLTGRAGRRGIDTEGHAIVLWTPEVVPEQLAGLAGARTFPLRSSFVPEYNMAVNL 489
Query: 374 -----LAGAK-VMHLSNESDDMKALQAGRSLEEARKLVEQS 408
LAGA+ ++H S QA RS+ + V+Q+
Sbjct: 490 LGRMGLAGAQELLHRS-----FAQFQADRSVVGQARKVDQA 525
>gi|343927930|ref|ZP_08767396.1| putative helicase [Gordonia alkanivorans NBRC 16433]
gi|343762153|dbj|GAA14322.1| putative helicase [Gordonia alkanivorans NBRC 16433]
Length = 942
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 228/452 (50%), Gaps = 44/452 (9%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 101 IVVMTTEVVRNMIYAESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLS 160
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E WI + G T +I RPVPL+ + + L D + +
Sbjct: 161 ATVSNAEEFGEWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADR---- 216
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-- 179
+ S V P +R+ R + + +S G+ + R + P +
Sbjct: 217 --KGSRPRVNP-----ELKRHIRHRILLAEDERDSSRGRGRGGGGGQPRRRDGRGPLLSR 269
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILY 236
+ + L +LPAI FIF+R GCDAA+ Q L LL E +EV+ + +R L
Sbjct: 270 PNLVGRLDREGLLPAIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELS 329
Query: 237 PDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
P ++ GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMP
Sbjct: 330 PSDADVLGVQEWREGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMP 389
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K + LT E Q+ GRAGRRGID GH V+V TP EE L
Sbjct: 390 ARSVVLERLVKYNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLA 449
Query: 353 FAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGN 411
A PL S F+ Y M +NLL GR L+ AR+L+ +SF
Sbjct: 450 GARTFPLRSSFSPEYNMAVNLL--------------------GRLGLDGARELLHRSFAQ 489
Query: 412 YVGSNVMLAAKDELCKIQKETDVLTSEISDDA 443
+ ++ +L + Q+ L E++ A
Sbjct: 490 FQADRSVVGLARKLHESQRALRKLDGELARAA 521
>gi|326382289|ref|ZP_08203981.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199019|gb|EGD56201.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 913
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 163/500 (32%), Positives = 243/500 (48%), Gaps = 69/500 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E W
Sbjct: 122 LYADSSALRGLSHVVMDEVHFLADRFRGAVWEEVILGLDPAVRVVSLSATVSNAEEFGDW 181
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
I + G T +I RPVPL + + L D K +V P
Sbjct: 182 ITTVRGDTAVIVDEHRPVPLHQHMLVANRMFGLFDRK---------------HPGQVNPE 226
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+ + R + S++ V + + + S+ P++I L +LP
Sbjct: 227 LNRYIKHR-------LLSDDAVGGYRERLARERRRGGTGISR-PRLIRLL---EENGLLP 275
Query: 194 AIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRF---------RILYPDAVRE 242
AI FIF+R+GCD A+ Q L D NLL+ ++ V+ + R +L D RE
Sbjct: 276 AITFIFSRKGCDGALAQCLRSDLNLLEPHQVQAVDAIVDRHLEALAPGDADVLGVDEWRE 335
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
GL +G AAHHAG LP ++ +EELF GLV+VVFATETLA GINMPAR+ VL L
Sbjct: 336 ----GLRRGFAAHHAGLLPTFRQAVEELFVEGLVQVVFATETLALGINMPARSVVLERLV 391
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
K + LT E Q+ GRAGRRGID GH V+V TP + L A PL S
Sbjct: 392 KYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWTPEVVPDRLAGLAGARTFPLRSS 451
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F Y M +NL+ D + +E +R L+ +SF + ++
Sbjct: 452 FAPEYNMAMNLI------------DRL-------GVEGSRDLLRRSFAQFQTDRSVVGQA 492
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRL-LSEAAYKEMANLQEELKAEKRFRTELRRRM 481
+L + + LT D ++ + R L+ A+ E +L+E+++ ++R + RRM
Sbjct: 493 RQLDRAR-----LTLRKVDGELEHSTERHGLAPEAFLEYVSLREDIRRQERA-AKFVRRM 546
Query: 482 ELKRFSALKDILKDFENGHL 501
E A+ + L + GH+
Sbjct: 547 EAS--DAVSEDLLALKPGHV 564
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 707 EKIKRLKARSKRLTKRIEQIE-------PSGWKEFLRISNVIHETRAL---DINTQVIFP 756
+ + RL R RL + I+ +E + EF I+ V+ E L D + P
Sbjct: 682 DDLHRLAERRHRLLRDIDGLERAVDERTAALETEFDAITGVLTELSYLETDDAGELAVTP 741
Query: 757 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK------VRLWKNNS 810
G I E++L +A +R I L P LAAV +++V E + + N
Sbjct: 742 TGAVLRRIYSESDLLVAECIRAGIWDRLSPPDLAAVVSAMVYESRRDSYTGGIDSMPGNK 801
Query: 811 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM 870
++ + + V + + E+QE+HGV D+ F + AWASG + RE ++
Sbjct: 802 ALRDALVATVEVWHATN-------EVQERHGVVQTREPDTGFCVAIGAWASGRSLREALL 854
Query: 871 DCA-----LDDGDLARLLRRTIDLLAQI 893
+ L GD R R+ IDLL Q+
Sbjct: 855 AASERGQMLSPGDFVRWNRQVIDLLEQV 882
>gi|453074949|ref|ZP_21977739.1| helicase [Rhodococcus triatomae BKS 15-14]
gi|452763898|gb|EME22173.1| helicase [Rhodococcus triatomae BKS 15-14]
Length = 896
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 214/457 (46%), Gaps = 62/457 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W+ + G TE++
Sbjct: 125 VVMDEVHYLADRFRGAVWEEVILHLPDDVRLVSLSATVSNAEEFGAWMETVRGDTEVVVD 184
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RP+PL + L L D + + L + V+ K S R
Sbjct: 185 EVRPIPLWQHMMVGRRLFDLFDTTAQDAD---PAARLVIDRDLVRHLKQRQSLDRYDSWQ 241
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
S G L + P+VI L +LPAI FIF+R GCDA
Sbjct: 242 PRGRGRGSAPSSGTRPLPR-----------PEVIA---RLDEEGLLPAITFIFSRAGCDA 287
Query: 207 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI-----------KGLLKGVAAH 255
AV C L ++ E A + RI+ P +GL +G+A H
Sbjct: 288 AVA---QC-LRSRLRLTTDEQADEIARIIDKHTGELPKHDLSVLGYWEWREGLERGIAGH 343
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K +LT
Sbjct: 344 HAGMLPAFRHTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGETHAELTPG 403
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V++ P A E L PL S F SY M +NL+
Sbjct: 404 EYTQLTGRAGRRGIDVEGHAVVLWQPGVEATEVAGLASTRTFPLRSSFRPSYNMSINLI- 462
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 435
D M A EAR L+E+SF + ++ + K Q+ L
Sbjct: 463 -----------DRMGA-------TEARALLERSFAQFQADRSVVGMVRSIEKDQRALAEL 504
Query: 436 TSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
E+ + ++ Y E A L+E ++ +R
Sbjct: 505 REELGGE-----------DSEYFEYAQLRERIRTRER 530
>gi|365866685|ref|ZP_09406292.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364003874|gb|EHM25007.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 926
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 208/422 (49%), Gaps = 67/422 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 114 LYAGSQSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 173
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E H R +++ + ++L+
Sbjct: 174 LDTVRGDTEVIVSEHRPVPLWQHVMAGRKMYDLFEEATDHGGRGAGRREVNPDLVRLARQ 233
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + I P+VID L +
Sbjct: 234 ESQNVYNPRDRRRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDN 279
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 280 EGLLPAITFIFSRAGCEAAVQ---------QCLYAGLRLNDEDKRRLVREIVEERTASIP 330
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 331 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 390
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 391 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTALAG 448
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 449 LAGTRTYPLRSSFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFA 489
Query: 411 NY 412
+
Sbjct: 490 QF 491
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYE---ARQADDAVAPKLPSGPAKVAMGEM 817
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 818 VRIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGQTLDEVLREAEMPAGD 874
Query: 879 LARLLRRTIDLLAQI 893
R ++ ID+L Q+
Sbjct: 875 FVRWCKQVIDVLGQV 889
>gi|386866978|ref|YP_006279972.1| helicase [Bifidobacterium animalis subsp. animalis ATCC 25527]
gi|385701061|gb|AFI63009.1| putative helicase [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 829
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 175/526 (33%), Positives = 248/526 (47%), Gaps = 73/526 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S + + ++LDEVHYL+D RG +WEE+II+ P+ V+II LS
Sbjct: 102 IVVMTTEVLRNMLYEHSTTLNALGYVILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLS 161
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPL-----LDEK 110
ATV+N ++ A WI + G T+L+ S RPVPL Y T+ L L + E+
Sbjct: 162 ATVSNVEDFADWIESVRGDTKLVVSEHRPVPLDQYVLLQKDPRTEPELFDLYRRDDMGEQ 221
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
MN +L +L E +RR + H D + + K
Sbjct: 222 TVKMNARLMNRLDELDRME--------ARRARADTH-DRPERRRDRGGKRKFVRKPERYQ 272
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDE-------- 219
RR V +D L L MLPAI+F+F+R GCD AV + L DE
Sbjct: 273 PRRWAV---VDELNFL---GMLPAIYFVFSRNGCDEAVDQCLNAGLRLTTDEEALRIRKI 326
Query: 220 -CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
EM E +L + + L+ R L +G AAHHAG + ++K +E LF+ GL+K
Sbjct: 327 VDEMIEGQLTREDLKTLHFSQFR----YALEEGFAAHHAGMIALFKQIVERLFEEGLIKC 382
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR+ V+ L K +G + LT E Q+ GRAGRRGID G+ ++V
Sbjct: 383 VFATETLALGINMPARSVVVEKLEKYNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVV 442
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL 398
Y E L V PL S F A++ M +NLL N SD
Sbjct: 443 DHRYFKPETAVALSSKRVYPLHSSFKATFNMAVNLL---------NSSD----------Y 483
Query: 399 EEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR----KSRRLLSE 454
E AR ++ SF + + + + K++K +++DA D + R LS+
Sbjct: 484 ETARDTLDHSFAQWEANESAWDLEACIGKLRKAIAGYEEAMANDAGDMVELLRIRMKLSD 543
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 500
E L+ E+ F++ R +R A LK+ E H
Sbjct: 544 LQKNERRRLKHEV-----FKSNEERSRAFRRLDAQIARLKEQEANH 584
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%)
Query: 672 YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 731
++ ++ARLK++ A K+ +K+ ++ K +RL R E S
Sbjct: 567 FRRLDAQIARLKEQEANHPA-KQSPDFKTLMKWGHRWVRETK-ELERLEYRYESRTSSVA 624
Query: 732 KEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLK 785
++F RI + V+ D N + L E +R E +L LA + + I DL
Sbjct: 625 RQFDRICHSLEVLGYLETADENGHTDYRLTEYGQLLRRLYTERDLVLAQAITHGIFDDLN 684
Query: 786 PAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 840
+LAAV +SL+ EG + R + P V+ N L + + L E +
Sbjct: 685 APELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANALRDMDGQIIALCEAN 739
Query: 841 GVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
G+E LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 740 GLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 793
>gi|183983077|ref|YP_001851368.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M]
gi|183176403|gb|ACC41513.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M]
Length = 918
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/428 (37%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKL 118
ATV+NA+E GWI + G T ++ RPVPL + L L D +K +R+
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAVSSRQA 223
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
+N L R R+ AD S+ + R + P
Sbjct: 224 RVNPDLL-------------RHIAHRREADRMSD--WEPRRSGRGGYGRGGRPRFYRPPP 268
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRIL 235
D + L S +LPAI F+F+R GCDAAVQ L E E +++ E+ R L
Sbjct: 269 RPDVIATLDSAGLLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDL 328
Query: 236 YPDAV--------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
D + RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 329 EDDDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 384
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAE 346
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E A+
Sbjct: 385 GINMPARTVVLERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENAD 444
Query: 347 ECCKLLFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
A PL S F SY M +NL V H+ E+A +L
Sbjct: 445 PSAVAGLASTRTFPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRL 485
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 486 LEQSFAQY 493
>gi|429758766|ref|ZP_19291279.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172980|gb|EKY14517.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 900
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 231/456 (50%), Gaps = 71/456 (15%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ + L ++ +VLDEVHYL+D RG VWEE++I+ P+ ++I LSA
Sbjct: 128 IIVMTTEVLRNMIYMGADLSNLSHVVLDEVHYLADRFRGPVWEEVLIHLPQHTKVIALSA 187
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSL 120
TV+NA+E WIGQ+ G ++I S RPVPL + L + +G +++L+
Sbjct: 188 TVSNAEEFGEWIGQVRGSCDVIISETRPVPLFQHMLVDGELYDVYAPSRRGSGQSQRLNP 247
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
L + + RR + R+ RS+ VI
Sbjct: 248 ELLYACSPQ--------GRRAHQRRF--------------------------RSRPATVI 273
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPD 238
L ++LPAI FIF+R GC+ AV+ + L + + ++ + + P
Sbjct: 274 T----LDRANLLPAIVFIFSRAGCEDAVREVIASGVTLTNRSQAEQIRRIAEEATAMIPP 329
Query: 239 ---AVR--EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
AV + IK L +G+AAHHAG LP+ K +E+LF GL+++V+ATETLA GINMPA
Sbjct: 330 EDYAVLGIDSWIKALERGIAAHHAGLLPLMKETVEKLFSMGLIRLVYATETLALGINMPA 389
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
R+ V+ SL K + ++L++ E Q++GRAGRRGID GHVV+ EE L
Sbjct: 390 RSVVIESLQKWNGAEHVRLSAGEFTQLSGRAGRRGIDVEGHVVVSGRRDISPEEVAALAS 449
Query: 354 AGVEPLVSQFTASYGMVLNLLAG-----------AKVMHLSNESDDMKALQAGRSLEEAR 402
PLVS F +Y MV+NLLA + +S + Q+ R+LE R
Sbjct: 450 KRTYPLVSAFHPTYNMVVNLLAHSTRKATRKALESSFAQFQADSSVVNLAQSARALE--R 507
Query: 403 KL------VEQSFGNYVGSNVMLAAKDELCKIQKET 432
+L V+ S GN + + +D L +++KE
Sbjct: 508 ELDCLGEGVDCSRGN---AQEYFSMRDRLARLEKEA 540
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
R A ++L KRI+ S ++F R+ + R + ++ G+ I G+ +L
Sbjct: 692 RKNAEYEKLLKRIDGRTNSVAQQFDRVCEGL--DRMGFLKNDLVTDSGQLLRRIFGDRDL 749
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
+ LR + L +LAA+ ++ V + S+ EP T + + E
Sbjct: 750 IVVEALRRGVWDRLSAPELAAIVSTCVYQS-----RGEESAAVEPWTAASSALAQAWEET 804
Query: 831 SSF----LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
S + +++ GV LD + V AWA+G T + L GD R +R+
Sbjct: 805 LSLSQAVMSVEKSVGVPQSPELDPGLAQAVMAWANGATLTTAIWGTPLLAGDFVRWIRQV 864
Query: 887 IDLLAQI 893
+DLL QI
Sbjct: 865 VDLLDQI 871
>gi|315444009|ref|YP_004076888.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
gi|315262312|gb|ADT99053.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
Length = 921
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 210/428 (49%), Gaps = 65/428 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LS
Sbjct: 109 IVVMTTEVLRNMLYADSPALHGLSHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-RKLSL 120
ATV+NA+E GWI + G T ++ RPVPL + LL L D +G + R L +
Sbjct: 169 ATVSNAEEFGGWIKTVRGDTTVVVDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLV 228
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ L + RR + + D Q S R +VI
Sbjct: 229 DPELLRHI---------AHRREAERLVDWQPRGRGRDRQGRQPS-----LYRTPGRAEVI 274
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
L R +LPAI FIF+R GCDAAV+ +C S + L R + V
Sbjct: 275 GVLEQSR---LLPAITFIFSRAGCDAAVK---------QCLRSSLRLTTNEERARIAEIV 322
Query: 241 -REPA---------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
R A +GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 323 DRRTADLNGTDLVVLDFHQWREGLLRGIAAHHAGMLPTFRHTVEELFTAGLVKAVFATET 382
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 383 LALGINMPARTVVLERLVKYNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVD 442
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F +Y M +NL+ Q G + +A +L
Sbjct: 443 PAEVAGLASTRTFPLRSSFAPTYNMTINLVH-----------------QMGPA--QAHRL 483
Query: 405 VEQSFGNY 412
+E+SF Y
Sbjct: 484 LERSFAQY 491
>gi|383807297|ref|ZP_09962857.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383298651|gb|EIC91266.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 815
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 198/382 (51%), Gaps = 33/382 (8%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + ++ + L ++ +V+DEVHYL+D RG VWEE+I++ PK+V+++ LS
Sbjct: 124 IVVMTTEVLRNMIYATSTTLMELGYVVMDEVHYLADRFRGAVWEEVILHLPKDVKVVSLS 183
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ ++ G TE+I S RPVPL + LL L E G + R
Sbjct: 184 ATVSNAEEFGAWLAEVRGNTEIIVSEIRPVPLHQHVMFGDELLELF-ESGSNKTR----- 237
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
V P + R H +N+ GQ + +S V ++D
Sbjct: 238 --------VNPELLQKHQARQRAPHRGPKNNSRSNYRGQ---PDRRFPRLEKSDVVDLLD 286
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEV-ELALKRFRILYPD 238
++LPAI+FIF+R GC+A+V L E E+ ++A R + +
Sbjct: 287 RA------ELLPAIFFIFSRVGCEASVSACRRAGVRLTTSEEAKEIRKIAEARCGSIADE 340
Query: 239 AVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
+ + L +G AAHHAG LP +K +EELF R LV+VVFATETLA GINMPAR
Sbjct: 341 DLDTLGYFDWLSSLERGYAAHHAGMLPAFKEVVEELFLRKLVRVVFATETLALGINMPAR 400
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL L K R+ +T+ E Q+ GRAGRRGID GH V++ L
Sbjct: 401 TVVLERLDKFNGEARVSITAGEYTQLTGRAGRRGIDTEGHAVILWGQQLDPNMVAGLASK 460
Query: 355 GVEPLVSQFTASYGMVLNLLAG 376
PL S F +Y M +NL++
Sbjct: 461 RTYPLNSSFRPTYNMAVNLISA 482
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 13/215 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAI 764
E+ ++L++ +IE K F RI +++ + L + + I G+ A I
Sbjct: 600 ERYQKLRSEINTAVNQIESRTNQVSKVFSRICDLLQDLGYLQPEDDDLEITESGQKLAKI 659
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
GE +L +A + DL A LAA+ A+LV E + + YEP
Sbjct: 660 YGERDLLIAQCVNQGTWKDLDAASLAAMAAALVYEN------RRDDGDYEPKLPKGQFRE 713
Query: 825 VLDEH---RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
VL+ + +ELQ K+ + LD S + WA+G +++ L GD R
Sbjct: 714 VLERTELIQEELVELQTKYSLAPETELDLGLSWPIYRWATGARLDDVLKVSGLLAGDFIR 773
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
++ IDLL Q+ + D + L + A +A +++ R
Sbjct: 774 WSKQIIDLLDQLAQGADAE--LAETAYNAMDLVKR 806
>gi|145223682|ref|YP_001134360.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145216168|gb|ABP45572.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 921
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 210/428 (49%), Gaps = 65/428 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LS
Sbjct: 109 IVVMTTEVLRNMLYADSPALHGLSHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-RKLSL 120
ATV+NA+E GWI + G T ++ RPVPL + LL L D +G + R L +
Sbjct: 169 ATVSNAEEFGGWIKTVRGDTTVVVDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLV 228
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ L + RR + + D Q S R +VI
Sbjct: 229 DPELLRHI---------AHRREAERLVDWQPRGRGRDRQGRQPS-----LYRTPGRAEVI 274
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
L R +LPAI FIF+R GCDAAV+ +C S + L R + V
Sbjct: 275 GVLEQSR---LLPAITFIFSRAGCDAAVK---------QCLRSSLRLTTNEERARIAEIV 322
Query: 241 -REPA---------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
R A +GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 323 DRRTADLNDTDLVVLDFHQWREGLLRGIAAHHAGMLPTFRHTVEELFTAGLVKAVFATET 382
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 383 LALGINMPARTVVLERLVKYNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVD 442
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F +Y M +NL+ Q G + +A +L
Sbjct: 443 PAEVAGLASTRTFPLRSSFAPTYNMTINLVH-----------------QMGPA--QAHRL 483
Query: 405 VEQSFGNY 412
+E+SF Y
Sbjct: 484 LERSFAQY 491
>gi|433631214|ref|YP_007264842.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070010]
gi|432162807|emb|CCK60193.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070010]
Length = 906
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 211/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRSGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD T R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPRRRGT---------GRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVKVVFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKVVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|443291320|ref|ZP_21030414.1| Helicase [Micromonospora lupini str. Lupac 08]
gi|385885722|emb|CCH18521.1| Helicase [Micromonospora lupini str. Lupac 08]
Length = 933
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 193/417 (46%), Gaps = 70/417 (16%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W
Sbjct: 149 LYAGSSTLQGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFADW 208
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G+T ++ S RPVPL + + L + + L+ + +++
Sbjct: 209 LVTVRGETAVVVSEHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPELLRYTRDQMRRL 268
Query: 134 KDG-------GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 186
+ G GS RR R M P ++D L
Sbjct: 269 ELGEGRSAGPGSGRRGPRWRGPMR--------------------------PDIVD---RL 299
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-- 244
+LPAI FIF+R GC AAVQ L ++ E + R++ P
Sbjct: 300 DREGLLPAILFIFSRAGCAAAVQQCLAAGL----RLTSPEERAEIRRVVESRVTAIPGED 355
Query: 245 ---------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
+ GL +G+AAHHAG LP++K +EELF RGLVK VFATETLA GINMPAR
Sbjct: 356 LTVLGYWEWLDGLERGLAAHHAGMLPVFKEIVEELFVRGLVKAVFATETLALGINMPARC 415
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
VL L K + LT E Q+ GRAGRRGID GH V+V +P L
Sbjct: 416 VVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTR 475
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL+ E AR L+E SF +
Sbjct: 476 TYPLRSSFRPSYNMAVNLVGTVGA-------------------EPARALLESSFAQF 513
>gi|357018344|ref|ZP_09080620.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356481814|gb|EHI14906.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 923
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 235/487 (48%), Gaps = 59/487 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E GW+ + G T ++
Sbjct: 131 VVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWMQTVRGDTTVVVD 190
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L D + + ++ L E RR + +
Sbjct: 191 EHRPVPLWQHVMVGRRLFDLFDYRAAKSGGEPVVDRNLLRHIE---------HRREAERL 241
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
D + R P+VI TL + +LPAI F+F+R GCDA
Sbjct: 242 VDWQPRGRGRP------PRGRPGLYRPPTRPEVIATL---DAEGLLPAITFVFSRAGCDA 292
Query: 207 AV-QYLEDCNLLDECE----MSEV------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
AV Q L L E ++E+ +L+ +L RE GLL+G+AAH
Sbjct: 293 AVKQCLRSPLRLTSAEERRQIAEIVDRRCADLSDADLIVLGYHEWRE----GLLRGLAAH 348
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K LT
Sbjct: 349 HAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLEKFDGEQHKPLTPG 408
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V++ P E L PL S F+ SY M +NL
Sbjct: 409 EYTQLTGRAGRRGIDVEGHAVVLWHPDLDPVEIAGLASTRTFPLRSSFSPSYNMTINL-- 466
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 435
V ++ E+ A +L+EQSF Y ++ + + ++ +
Sbjct: 467 ---VQQMTPEA--------------AHRLLEQSFAQYQADRSVVGLVRGIERGRRMLAEI 509
Query: 436 TSEISDDAID-RKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 494
+E+ D + + K+RR E+ E A L+ ++ +R ++ R L R A + L
Sbjct: 510 AAELGDHSQNGGKNRR---ESPILEYARLRAKISERERAQSRASR---LHRRQAANEALA 563
Query: 495 DFENGHL 501
G +
Sbjct: 564 KLRRGDI 570
>gi|390936819|ref|YP_006394378.1| putative helicase [Bifidobacterium bifidum BGN4]
gi|389890432|gb|AFL04499.1| putative helicase [Bifidobacterium bifidum BGN4]
Length = 875
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 207/414 (50%), Gaps = 86/414 (20%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S + + + ++LDEVHYL+D RG VWEE+II+ P++V +I LS
Sbjct: 133 IVVMTTEVLRNMLYEHSTMLNALRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLS 192
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH 113
ATV+N ++ + WI + G T+L+ S RRPVPL + T+ LL L D +G+
Sbjct: 193 ATVSNVEDFSSWISSVRGDTKLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQ 252
Query: 114 ---MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
+N +L QL + SR R R H S+ + A
Sbjct: 253 TTKLNARLIDRLDQLDRQAARRRGTENSRSRG-RGH-----------------SRGHVPA 294
Query: 171 IRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEM 222
R + P+ V+D L +L DMLP I+FIF+R GCD AV E C L E EM
Sbjct: 295 QRHT--PKRWAVVDELNYL---DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEM 346
Query: 223 SEVE------------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK 264
+ L RFR L +G A+HHAG + +++
Sbjct: 347 RRIRAIVDEMVAGQLSQEDLKALQFSRFRF------------ALEEGFASHHAGMVALFR 394
Query: 265 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 324
+E LF+ GLVK+VFATETLA GINMPAR ++ L K SG + LT E Q+ GRA
Sbjct: 395 QIVERLFEEGLVKMVFATETLALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRA 454
Query: 325 GRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
GRRGID GH ++V P A K ++ PL S F A++ M +NLL
Sbjct: 455 GRRGIDTIGHAIVVDHRDFVPATAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAM 774
+R+ R E S ++F RI +++ + + D + G+ I E ++ LA
Sbjct: 636 ERVQHRYESRTGSVARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAE 695
Query: 775 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 890 LAQI----PKLPDVDQRLQKNAVDASNVMDR 916
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|291443514|ref|ZP_06582904.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291346461|gb|EFE73365.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 946
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 208/422 (49%), Gaps = 67/422 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E H R +++ + ++L+
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQ 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + I P+VID L +
Sbjct: 254 ESQNTYNPRDRRRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDN 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 300 EGLLPAITFIFSRAGCEAAVQ---------QCMYAGLRLNDEDNRRLVREIVEERTASIP 350
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 351 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 410
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 411 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAG 468
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 469 LAGTRTYPLRSSFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFA 509
Query: 411 NY 412
+
Sbjct: 510 QF 511
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 780
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYE---ARQADDAVAPKLPSGPAKVAMGEM 837
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 838 VRIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGD 894
Query: 879 LARLLRRTIDLLAQI 893
R ++ ID+L Q+
Sbjct: 895 FVRWCKQVIDVLGQV 909
>gi|408676942|ref|YP_006876769.1| putative helicase [Streptomyces venezuelae ATCC 10712]
gi|328881271|emb|CCA54510.1| putative helicase [Streptomyces venezuelae ATCC 10712]
Length = 942
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/494 (32%), Positives = 233/494 (47%), Gaps = 89/494 (18%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LS
Sbjct: 122 IVVMTTEVLRNMLYAGSQALSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLS 181
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR----- 116
ATV+NA+E W+ + G TE+I S RPVPL + + L +E+ H R
Sbjct: 182 ATVSNAEEFGDWLDTVRGDTEVIVSESRPVPLWQHVLAGRRMYDLFEEETDHGGRGASRR 241
Query: 117 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L+ + L+L+ +E + RRR + + + + I
Sbjct: 242 ELNPDLLRLARTENTRTYNPRDRRRGK-----------MIREADRERERRQRSRIWTPGR 290
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRF 232
P+VI+ L + +LPAI FIF+R GC+AAVQ +C + + L +R
Sbjct: 291 PEVIE---RLDAEGLLPAITFIFSRAGCEAAVQ---------QCLYAGLRLNDEDGRRRV 338
Query: 233 RILYPDAVREPAIKG--------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
R + + R AI G L +G+AAHHAG LP +K +EELF RGLVK
Sbjct: 339 REIVEE--RTAAIPGEDLHVLGYYEWLEALERGIAAHHAGMLPTFKEVVEELFVRGLVKA 396
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR+ VL L K +T E Q+ GRAGRRGID GH V++
Sbjct: 397 VFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVL 456
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL 398
E L PL S F SY M +NL+ Q GR
Sbjct: 457 WQRGLDPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVD-----------------QFGR-- 497
Query: 399 EEARKLVEQSFGNYVGSNVMLAAKDELCK----IQKETDVLTSEISDDAIDRKSRRLLSE 454
+R+L+E SF + ++ ++ K +Q + +T + D
Sbjct: 498 HRSRELLETSFAQFQADRSVVGISRQVQKNEEGLQGYREGMTCHLGD------------- 544
Query: 455 AAYKEMANLQEELK 468
++E A L+ +LK
Sbjct: 545 --FEEYARLRRDLK 556
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 17/265 (6%)
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H++ E H + ++ARL+ +I R + D ++ E + RL+ +++L
Sbjct: 678 HINPERHRKQRSAAADDRELARLRTEI-RAHPCHGCDEREDHARWAE-RYHRLQRDTQQL 735
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L N + G+ A + GE +L + LR++
Sbjct: 736 ERRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTENGKRLARLYGELDLLASECLRDR 793
Query: 780 ILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+ L PA+LAA ++LV E + +L N+ ++ + LD F
Sbjct: 794 VWEGLNPAELAACASALVFEARQSDDAVAPKLPTGNAKA--ALGEMVRIWGRLDALEEEF 851
Query: 834 -LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892
+ E G P D F+ WAS + E++ + + GD R ++ ID+L Q
Sbjct: 852 KINQAEGVGQREP---DLGFAWAAYQWASDKSLDEVLREAEMPAGDFVRWCKQVIDVLGQ 908
Query: 893 I-PKLPDVDQRLQKNAVDASNVMDR 916
I P + + KNA A + + R
Sbjct: 909 IAAAAPRENSTVAKNARKAVDSLLR 933
>gi|239986574|ref|ZP_04707238.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
11379]
Length = 926
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 208/422 (49%), Gaps = 67/422 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 114 LYAGSQSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 173
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E H R +++ + ++L+
Sbjct: 174 LDTVRGDTEVIVSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQ 233
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + I P+VID L +
Sbjct: 234 ESQNTYNPRDRRRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDN 279
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 280 EGLLPAITFIFSRAGCEAAVQ---------QCMYAGLRLNDEDNRRLVREIVEERTASIP 330
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 331 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 390
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 391 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAG 448
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 449 LAGTRTYPLRSSFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFA 489
Query: 411 NY 412
+
Sbjct: 490 QF 491
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYE---ARQADDAVAPKLPSGPAKVAMGEM 817
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 818 VRIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGD 874
Query: 879 LARLLRRTIDLLAQI 893
R ++ ID+L Q+
Sbjct: 875 FVRWCKQVIDVLGQV 889
>gi|336325573|ref|YP_004605539.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101555|gb|AEI09375.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 877
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 224/467 (47%), Gaps = 79/467 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D SRG VWEE I+ +V ++ LSATV+N +E GW+ + G+T++I +
Sbjct: 95 VVMDEVHFLADKSRGPVWEEAILNLDPDVILVSLSATVSNVEEFGGWLSTVRGRTDIILT 154
Query: 87 SRRPVPLTWYFSTKTALLPLLDE---KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
RP+PL+ + +PL + +GK + LS + + ++ G RR
Sbjct: 155 EHRPIPLSQFMMVGRQFIPLFQDQATRGKAADGSLSPAINRAVVAAAAKAEESGKRR--- 211
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+RS V HL + +MLPAI+FIF+R G
Sbjct: 212 --------------------------GPKRSAVA------LHLDAANMLPAIYFIFSRVG 239
Query: 204 CDAAVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGV 252
CDAAV+ L + + + SE+ L + +L R + + +G
Sbjct: 240 CDAAVKQLLTDRVDFTTPAQRSEILKTIDEGVEGLTQEDLNVLGFRQWR----RAVSRGF 295
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPAR+ VL L K + L
Sbjct: 296 AAHHAGMLPAFRHIVEDLFARGLLKVCFATETLALGINMPARSVVLEKLIKFNGEAHVDL 355
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
T + Q+ GRAGRRGID +G+ V++ L PL S F Y M +N
Sbjct: 356 TPGQYTQLTGRAGRRGIDTKGNAVVLWAQGIDPHAVADLASTRTYPLDSTFRPGYNMAVN 415
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
L+ + L E+ +L+++SF Y ++ A + + + +++
Sbjct: 416 LI-------------------NTKGLTESHRLLQRSFAQYQADGTIVEAAEAVERRRRQL 456
Query: 433 DVLTSEISDDAID--RKSRRLLSE-----AAYKEMANLQEELKAEKR 472
D E+ + D RK+ R S+ A + A L+ EL E+R
Sbjct: 457 DEAEDELQNVITDFRRKAARFESDLESDTKAVVDYARLRRELSQEER 503
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 814
GE A I E++L +A LR I +L PA+LAAV ++ V E K ++ E
Sbjct: 712 GERLARIHHESDLLIAQCLRRGIWDNLDPAELAAVASTCVFENRKESSAEAALPTEALKE 771
Query: 815 PSTTVINVINVL--DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 870
+ + + N L DE R + +E + F+ V W +G +
Sbjct: 772 AVSHTLRIYNELASDEQRHRVPQTREP---------ELGFATAVHQWTAGAPLEYCLQAA 822
Query: 871 ---DCALDDGDLARLLRRTIDLLAQI 893
L GD R RR IDLL QI
Sbjct: 823 EASGAVLTPGDFVRWCRRVIDLLDQI 848
>gi|295839814|ref|ZP_06826747.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
gi|295827661|gb|EDY44690.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
Length = 946
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 199/406 (49%), Gaps = 45/406 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 145 LYAGSPALTGLGYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 204
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE++ S RPVPL + + L +E G+ R ++ + L+++ E
Sbjct: 205 LDTVRGDTEVVVSEHRPVPLFQHVLAGRRMYDLFEE-GRGRKRAVNPDLLRMARMEAG-- 261
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+ + P+VID L S +LP
Sbjct: 262 -------------RTGYGGRRRGREADRERERRQRARAWTPGRPEVID---RLDSEGLLP 305
Query: 194 AIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IK 246
AI FIF+R C+AAVQ L DE E V EL +R + P+ + ++
Sbjct: 306 AITFIFSRAACEAAVQQCLFAGLRLNDESERLAVRELVEERTASIPPEDLHVLGYFEFLE 365
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 366 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 425
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 426 EQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPS 485
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Y M +NL+ Q GR +R+L+E SF +
Sbjct: 486 YNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 512
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 727 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 783
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPST 817
GE +L + LR + L PA+LAA ++LV E KV K S++ T
Sbjct: 784 GELDLLASECLRAGVWEGLGPAELAACASALVYESRSGDDAGAPKVPSGKVTSAL----T 839
Query: 818 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
++ + LD F + E G P D F+ WASG E++ + +
Sbjct: 840 EMVRIWGRLDAVEEDFGISRTEGVGQREP---DLGFAWAAYEWASGKGLDEVLREAEMPA 896
Query: 877 GDLARLLRRTIDLLAQI 893
GD R ++ ID+L QI
Sbjct: 897 GDFVRWTKQIIDVLGQI 913
>gi|411001332|ref|ZP_11377661.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 926
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 208/422 (49%), Gaps = 67/422 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 114 LYAGSQSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 173
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E H R +++ + ++L+
Sbjct: 174 LDTVRGDTEVIVSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQ 233
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + I P+VID L +
Sbjct: 234 ESQNTYNPRDRRRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDN 279
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 280 EGLLPAITFIFSRAGCEAAVQ---------QCLYAGLRLNDEDNRRLVREIVEERTASIP 330
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 331 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 390
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 391 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAG 448
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 449 LAGTRTYPLRSSFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFA 489
Query: 411 NY 412
+
Sbjct: 490 QF 491
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 820
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPAGPAKV--AMGEMV 818
Query: 821 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 879
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 819 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDF 875
Query: 880 ARLLRRTIDLLAQI 893
R ++ ID+L Q+
Sbjct: 876 VRWCKQVIDVLGQV 889
>gi|443490879|ref|YP_007369026.1| ATP-dependent DNA helicase HelY [Mycobacterium liflandii 128FXT]
gi|442583376|gb|AGC62519.1| ATP-dependent DNA helicase HelY [Mycobacterium liflandii 128FXT]
Length = 940
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 211/428 (49%), Gaps = 58/428 (13%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LS
Sbjct: 126 VVVMTTEVLRNMLYADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLS 185
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKL 118
ATV+NA+E GWI + G T ++ RPVPL + L L D +K +R+
Sbjct: 186 ATVSNAEEFGGWIQTVRGDTAVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAGSSRQA 245
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
+N L R R+ AD S+ + R + P
Sbjct: 246 RVNPDLL-------------RHIAHRREADRMSD--WEPRRSGRGEYGRGGRPRFYRPPP 290
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL---KRFRIL 235
D + L S +LPAI F+F+R GCDAAVQ L E ++A R L
Sbjct: 291 RPDVIATLDSAGLLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEGRAQIAEVIDHRCGDL 350
Query: 236 YPDAV--------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
D + RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 351 EDDDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 406
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAE 346
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E A+
Sbjct: 407 GINMPARTVVLERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENAD 466
Query: 347 ECCKLLFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
A PL S F SY M +NL V H+ E+A +L
Sbjct: 467 PSAVAGLASTRTFPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRL 507
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 508 LEQSFAQY 515
>gi|182439666|ref|YP_001827385.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780331|ref|ZP_08239596.1| DSH domain protein [Streptomyces griseus XylebKG-1]
gi|178468182|dbj|BAG22702.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326660664|gb|EGE45510.1| DSH domain protein [Streptomyces griseus XylebKG-1]
Length = 946
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 208/422 (49%), Gaps = 67/422 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSPSLSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E H R +++ + ++L+
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVMAGRKMYDLFEETTDHGGRGAGRREVNPDLVRLARQ 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + I P+VID L +
Sbjct: 254 ESQNVYNPRDRRRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDN 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 300 EGLLPAITFIFSRAGCEAAVQ---------QCLYAGLRLNDEDKRRLVREIVEERTASIP 350
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 351 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 410
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 411 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTGLAG 468
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 469 LAGTRTYPLRSSFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFA 509
Query: 411 NY 412
+
Sbjct: 510 QF 511
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 780
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYE---ARQADDAVAPKLPSGPAKVAMGEM 837
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 838 VRIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGD 894
Query: 879 LARLLRRTIDLLAQI 893
R ++ ID+L Q+
Sbjct: 895 FVRWCKQVIDVLGQV 909
>gi|345013945|ref|YP_004816299.1| DSH domain-containing protein [Streptomyces violaceusniger Tu 4113]
gi|344040294|gb|AEM86019.1| DSH domain protein [Streptomyces violaceusniger Tu 4113]
Length = 940
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 204/411 (49%), Gaps = 45/411 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQALLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG-----KHMNRKLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +EK + R+++ + ++L+
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEKSGQDGDQSGRREVNPDLVRLARM 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E G +RR N + + ++ I R++V +D S
Sbjct: 254 ESSRPTFGRDKRRGR--------NMREADRERERRQRSRIWTPGRAEVIDRLD------S 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-- 244
+LPAI FIF+R GC AAVQ L DE + V ++ PD
Sbjct: 300 EGLLPAITFIFSRAGCQAAVQQCLHAGLRLNDEAARARVRALVEERTAGIPDEDLHVLGY 359
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 360 FEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKL 419
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K +T E Q+ GRAGRRGID GH V++ L PL S
Sbjct: 420 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRTMDPAALAGLAGTRTYPLRS 479
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
F SY M +NL++ Q GR +R+L+E SF +
Sbjct: 480 SFRPSYNMAVNLVS-----------------QFGR--HRSRELLETSFAQF 511
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 17/239 (7%)
Query: 665 YHDAVENYKEQR-----TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
+HD KE+ T++ARL+ I R D ++ E + +RL +++L
Sbjct: 678 HHDVGRRRKERSAAADDTEIARLRAAI-RAHPCHGCSDREDHARWGE-RYQRLLRDTRQL 735
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI +++ E L + + +G+ A + GE +L + LR
Sbjct: 736 ERRIEGRTNTIARTFDRICSLLSELGYLRDDE--VTDVGKRLARLYGELDLLASECLREG 793
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
+ L PA+LAA ++LV E R + P + + + L+E+
Sbjct: 794 VWEGLPPAELAACASALVYE---ARTADDALPPKLPPGRAKDALGEMVRIWGRLDALEEE 850
Query: 840 HGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
H + + D F+ WASG E++ + + GD R ++ ID+L QI
Sbjct: 851 HKINQAEGVGQREPDLGFAWAAYRWASGHGLDEVLREIDMPAGDFVRWTKQLIDVLGQI 909
>gi|302546693|ref|ZP_07299035.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302464311|gb|EFL27404.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 949
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 227/467 (48%), Gaps = 55/467 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 142 LYAGSQSLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 201
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG-----KHMNRKLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +EK + R+++ + ++L+
Sbjct: 202 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEKSGRDGDQSGRREVNPDLVRLARM 261
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E G +RR NN+ + + + + I +VID L +
Sbjct: 262 ENSRPAFGRDKRRGR--------NNMREA--DRERERRQRSRIWTPGRAEVID---RLDA 308
Query: 189 RDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-- 244
+LPAI FIF+R GC++AVQ L D+ ++V ++ PD
Sbjct: 309 EGLLPAITFIFSRAGCESAVQQCLYAGLRLNDDAARAQVRAIVEERTAGIPDEDLHVLGY 368
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 369 FEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKL 428
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K +T E Q+ GRAGRRGID GH V++ L PL S
Sbjct: 429 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLRS 488
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
F SY M +NL++ Q GR +R+L+E SF + ++
Sbjct: 489 SFKPSYNMAVNLVS-----------------QFGR--HRSRELLETSFAQFQADKAVVGI 529
Query: 422 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
++ + Q+ + + ++ D + E A L+ ELK
Sbjct: 530 SRQVQRNQEGLEGYRASMTCHLGD-----------FDEYARLRRELK 565
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 51/274 (18%)
Query: 665 YHDAVENYKEQR-----TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
+HD + KE+ T++ARL+ I R D ++ E + RL +++L
Sbjct: 687 HHDVRRHRKERSRAADDTEIARLRAAI-RAHPCHGCSDREDHARWGE-RYHRLLRDTRQL 744
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L + + +G+ A + GE +L + LR+
Sbjct: 745 ERRIEGRTNTIARTFDRICALLSELEYLRGDE--VTDVGKRLARLYGELDLLASECLRDG 802
Query: 780 ILLDLKPAQLAAVCASLVSE---------------------GIKVRLWKNNSSIYEPSTT 818
+ LKPA+LAA ++LV E G VR+W ++ E
Sbjct: 803 VWEGLKPAELAACASALVYESRSADDALPPKLPTGAAKAALGEMVRIWGRLDALEE---- 858
Query: 819 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
EH+ + E G P D F+ WASG E++ + + GD
Sbjct: 859 ---------EHK---INQAEGVGQREP---DLGFAWAAYRWASGHGLDEVLREVDMPAGD 903
Query: 879 LARLLRRTIDLLAQI-PKLPDVD-QRLQKNAVDA 910
R ++ ID+L QI PD R + AVD
Sbjct: 904 FVRWCKQLIDVLGQIAAAAPDGSVARNARKAVDG 937
>gi|348173912|ref|ZP_08880806.1| putative ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL
18395]
Length = 925
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 212/429 (49%), Gaps = 64/429 (14%)
Query: 2 QLRIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 58
+ ++VV + V M+ + S D + +V+DEVHYL+D RG VWEE+I++ P+ VQ+
Sbjct: 123 EAQVVVMTTEVLRNMLYAGSRSLDQLGYVVMDEVHYLADRFRGAVWEEVILHLPEYVQVA 182
Query: 59 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 118
LSATV+NA+E W+ ++ G T ++ RPVPL + + L G+ NR+L
Sbjct: 183 SLSATVSNAEEFGEWLQEVRGDTTVVVDEHRPVPLWQHMLVGPRMFDLFG--GETQNREL 240
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR------ 172
+N N +H + + G+ + + NA R
Sbjct: 241 QINP-------------------NLVRHTQQLARVHLPYGGR----RGAPNAKRKGPRPP 277
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK 230
R P ++ L L + +LPAI FIF+R GCD AV L + E+ E+ +
Sbjct: 278 RFYPPSRVEMLTGLDAAGLLPAIVFIFSRNGCDQAVSQCMRAGLRLTTDAEIDEIREVID 337
Query: 231 RFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
P++ + A+ G L +G+AAHHAG LP +K +EELF RGLVK VFATE
Sbjct: 338 EHTANLPES--DLAVLGFWEWREALERGLAAHHAGLLPAFKETVEELFVRGLVKAVFATE 395
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA GINMPART VL L K + L+ E Q+ GRAGRRGID GH V+V P
Sbjct: 396 TLALGINMPARTVVLERLVKFNGESHVDLSPGEYTQLTGRAGRRGIDVEGHAVVVWQPGV 455
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARK 403
++ L PL S F Y M +NL V + ++ AR+
Sbjct: 456 DPKQVAGLASTRTYPLRSSFRPGYNMAVNL-----VQRVGQDA--------------ARE 496
Query: 404 LVEQSFGNY 412
L+EQSF +
Sbjct: 497 LLEQSFAQF 505
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETAAA 763
E+ +RL+ ++ L +++ S + F RI ++ E L + + + G +
Sbjct: 705 ERYERLRGENENLRRKVAATTHSLARSFDRIVALLTERDYLPVAGSSEGAVTQHGRRLSR 764
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+ E++L A LR + L PA+LAAV +SLV E + L P V
Sbjct: 765 LYSESDLLAAECLRVEAWRGLGPAELAAVVSSLVYESRREGL--------APQVPAGAVS 816
Query: 824 NVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALD 875
+ L + EL++ +H ++ D+ F+ V WA G + +++ L
Sbjct: 817 DALATTWRLWAELEDDERRHKLDRTREPDAGFAWPVFRWARGESLEKVLTAAESSGHELS 876
Query: 876 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
GD R R+ IDLL QI ++ + +A A + R
Sbjct: 877 AGDFVRWCRQVIDLLDQIREVVGAADPVGSSAAKAVTAIRR 917
>gi|118470951|ref|YP_888176.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|118172238|gb|ABK73134.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
Length = 912
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 233/509 (45%), Gaps = 90/509 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ ++ L + +V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GW
Sbjct: 119 LYANSQALHGLSYVVMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGW 178
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
I + G T ++ RPVPL+ + L L + + L ++
Sbjct: 179 IQTVRGDTTVVVDEHRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI---------- 228
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
S RR + + D + R P+VI L +LP
Sbjct: 229 ----SHRREADRLMDWQPRG--------RGRGGRPQFYRPPGRPEVITAL---DDAGLLP 273
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI-------- 245
AI F+F+R GCDAAV+ +C S + L + R + V
Sbjct: 274 AITFVFSRAGCDAAVK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLI 324
Query: 246 --------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART V
Sbjct: 325 VLDYHEWREGLLRGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVV 384
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
L L K + LT E Q+ GRAGRRGID GH V++ P + E ++ AG+
Sbjct: 385 LERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLA 442
Query: 358 -----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL V H+ ++A +L+E+SF Y
Sbjct: 443 STRTFPLRSSFAPSYNMTINL-----VQHMGP--------------QQAHELLERSFAQY 483
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + ++ L +EI ++A + A L+ ++ +R
Sbjct: 484 QADRSVVGLVRGIRRGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERER 532
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHL 501
++ R L+R A D L D G +
Sbjct: 533 AQSRASR---LQRRRAATDALADLRKGDI 558
>gi|357393593|ref|YP_004908434.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
gi|311900070|dbj|BAJ32478.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
Length = 967
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 202/409 (49%), Gaps = 44/409 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 159 LYAGSSALDGLGYVVMDEVHYLADRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 218
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL-NYLQLSTSEVKP 132
+ + G TE+I S RPVPL + + L + K SL N + E+
Sbjct: 219 LDTVRGGTEVIVSEHRPVPLWQHVMAGNRMYDLFASPDRDGRPKGSLKNPAKAVNPELV- 277
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--PQVIDTLWHLRSRD 190
R +R AD + G+ S+ A R +V P +D + L +
Sbjct: 278 --------RLARSEADRGRDRFARGRGR------SMPAGRPGRVWTPSRVDVIDRLDAEG 323
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA--- 244
+LPAI FIF+R GC+AAVQ L D + +R R + + +
Sbjct: 324 LLPAITFIFSRAGCEAAVQQCLHSGLRLNRDADRFKVRQFVEERCRDIPDEDLHVLGYYE 383
Query: 245 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+ GL +G+AAHHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ V+ L K
Sbjct: 384 WLDGLERGIAAHHAGMLPRFKEVVEELFVQGLVKAVFATETLALGINMPARSVVMEKLVK 443
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 444 WNGETHADITPGEYTQLTGRAGRRGIDIEGHAVVLWQRGLDPEALAGLAGTRTYPLKSSF 503
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL+ Q GR +R+L+E SF +
Sbjct: 504 RPSYNMAVNLVG-----------------QFGR--HRSRELLETSFAQF 533
>gi|399988198|ref|YP_006568548.1| ATP-dependent DNA helicase HelY [Mycobacterium smegmatis str. MC2
155]
gi|399232760|gb|AFP40253.1| ATP-dependent DNA helicase HelY [Mycobacterium smegmatis str. MC2
155]
Length = 914
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 233/509 (45%), Gaps = 90/509 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ ++ L + +V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GW
Sbjct: 121 LYANSQALHGLSYVVMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGW 180
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
I + G T ++ RPVPL+ + L L + + L ++
Sbjct: 181 IQTVRGDTTVVVDEHRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI---------- 230
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
S RR + + D + R P+VI L +LP
Sbjct: 231 ----SHRREADRLMDWQPRG--------RGRGGRPQFYRPPGRPEVITAL---DDAGLLP 275
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI-------- 245
AI F+F+R GCDAAV+ +C S + L + R + V
Sbjct: 276 AITFVFSRAGCDAAVK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLI 326
Query: 246 --------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART V
Sbjct: 327 VLDYHEWREGLLRGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVV 386
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
L L K + LT E Q+ GRAGRRGID GH V++ P + E ++ AG+
Sbjct: 387 LERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLA 444
Query: 358 -----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL V H+ ++A +L+E+SF Y
Sbjct: 445 STRTFPLRSSFAPSYNMTINL-----VQHMGP--------------QQAHELLERSFAQY 485
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + ++ L +EI ++A + A L+ ++ +R
Sbjct: 486 QADRSVVGLVRGIRRGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERER 534
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHL 501
++ R L+R A D L D G +
Sbjct: 535 AQSRASR---LQRRRAATDALADLRKGDI 560
>gi|441211108|ref|ZP_20974824.1| putative helicase helY [Mycobacterium smegmatis MKD8]
gi|440626355|gb|ELQ88185.1| putative helicase helY [Mycobacterium smegmatis MKD8]
Length = 912
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 233/509 (45%), Gaps = 90/509 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ ++ L + +V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GW
Sbjct: 119 LYANSQALHGLSYVVMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGW 178
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
I + G T ++ RPVPL+ + L L + + L ++
Sbjct: 179 IQTVRGDTTVVVDEHRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI---------- 228
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
S RR + + D + R P+VI L +LP
Sbjct: 229 ----SHRREADRLMDWQPRG--------RGRGGRPQFYRPPGRPEVITAL---DDAGLLP 273
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI-------- 245
AI F+F+R GCDAAV+ +C S + L + R + V
Sbjct: 274 AITFVFSRAGCDAAVK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLI 324
Query: 246 --------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART V
Sbjct: 325 VLDYHEWREGLLRGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVV 384
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
L L K + LT E Q+ GRAGRRGID GH V++ P + E ++ AG+
Sbjct: 385 LERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLA 442
Query: 358 -----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F SY M +NL V H+ ++A +L+E+SF Y
Sbjct: 443 STRTFPLRSSFAPSYNMTINL-----VQHMGP--------------QQAHELLERSFAQY 483
Query: 413 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + ++ L +EI ++A + A L+ ++ +R
Sbjct: 484 QADRSVVGLVRGIRRGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERER 532
Query: 473 FRTELRRRMELKRFSALKDILKDFENGHL 501
++ R L+R A D L D G +
Sbjct: 533 AQSRASR---LQRRRAATDALADLRKGDI 558
>gi|456738501|gb|EMF63068.1| helicase [Propionibacterium acnes FZ1/2/0]
Length = 917
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 196/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E GW+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGGWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|331697089|ref|YP_004333328.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951778|gb|AEA25475.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 924
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 157/426 (36%), Positives = 211/426 (49%), Gaps = 57/426 (13%)
Query: 4 RIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
++VV + V M+ + S D + +V+DEVHYL+D RG VWEE+I+ P+ V ++ L
Sbjct: 117 QVVVMTTEVLRNMIYAGSRHLDQLGYVVMDEVHYLADRFRGAVWEEVILQLPEHVALVSL 176
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G T ++ RPVPL + LL L + G + +
Sbjct: 177 SATVSNAEEFGDWLVTVRGDTTVVVDEHRPVPLWQHMMVGNRLLDLFVQSGAADDPTAA- 235
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH--QLSKNSINAIRRSQVPQ 178
L++ V+ ++ D S+ V G+ Q S R
Sbjct: 236 -ELRVDPDLVRQTRE-----------LDRQSSTAVWDRGRRGRQGSAPRRVGFRPPSRVT 283
Query: 179 VIDTLWHLRSRD-MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRIL 235
VID L RD +LPAI F+F+R GCDAAV L + E++E+ +++
Sbjct: 284 VIDRL----DRDGLLPAITFVFSRNGCDAAVGQCVRSGLRLTTDDEVAEIRRIVEKHTGD 339
Query: 236 YPDAV---------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
P RE GL +G+AAHHAG LP +K +EELF RGLV+ VFATETLA
Sbjct: 340 LPQGDLGVLGYWEWRE----GLERGIAAHHAGLLPAFKETVEELFVRGLVRCVFATETLA 395
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K ++LT E Q+ GRAGRRGID GH V+V P E
Sbjct: 396 LGINMPARTVVLERLVKYNGEAHVELTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPE 455
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
L PL S F Y M +NLLA L A RS R+L+E
Sbjct: 456 RVGGLASTRTYPLRSSFRPGYNMAVNLLA---------------RLGAQRS----RELLE 496
Query: 407 QSFGNY 412
SFG +
Sbjct: 497 MSFGQF 502
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 763
E+ RL +++L +++ S ++F RI ++ E RA + GE A
Sbjct: 703 ERYHRLDRDTEQLRQKVRATTHSLARQFDRIRALLDERGYVRADADGENAVTEHGERLAR 762
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+ GE++L A LR+ + L +LAAV ++LV E + N P+ V +
Sbjct: 763 LWGESDLLAAECLRHGVWERLTAPELAAVVSALVYESRR----DNGPVPRVPAGAVSEAL 818
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 878
+ + +H ++ D F+ V WA G + +++ L GD
Sbjct: 819 ADTVRLWADLESDERRHRIDRTREPDLGFAWPVHRWARGESLAQVLAAAEQNGHELSAGD 878
Query: 879 LARLLRRTIDLLAQI 893
R R+ +DLL QI
Sbjct: 879 FVRWCRQVLDLLDQI 893
>gi|15609229|ref|NP_216608.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|15841583|ref|NP_336620.1| DEAD/DEAH box helicase [Mycobacterium tuberculosis CDC1551]
gi|148661907|ref|YP_001283430.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Ra]
gi|148823306|ref|YP_001288060.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis F11]
gi|253798849|ref|YP_003031850.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
1435]
gi|254232255|ref|ZP_04925582.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis C]
gi|254364905|ref|ZP_04980951.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis str.
Haarlem]
gi|254551125|ref|ZP_05141572.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443598|ref|ZP_06433342.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T46]
gi|289447713|ref|ZP_06437457.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis CPHL_A]
gi|289745368|ref|ZP_06504746.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
02_1987]
gi|289754202|ref|ZP_06513580.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis EAS054]
gi|289758209|ref|ZP_06517587.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
T85]
gi|289762254|ref|ZP_06521632.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis GM
1503]
gi|294997036|ref|ZP_06802727.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis 210]
gi|297634673|ref|ZP_06952453.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|297731661|ref|ZP_06960779.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
R506]
gi|298525591|ref|ZP_07013000.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776333|ref|ZP_07414670.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu001]
gi|306780120|ref|ZP_07418457.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu002]
gi|306784865|ref|ZP_07423187.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu003]
gi|306789231|ref|ZP_07427553.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu004]
gi|306793561|ref|ZP_07431863.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu005]
gi|306803827|ref|ZP_07440495.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu008]
gi|306808400|ref|ZP_07445068.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu007]
gi|306972448|ref|ZP_07485109.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu010]
gi|307080157|ref|ZP_07489327.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu011]
gi|307084738|ref|ZP_07493851.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu012]
gi|313658996|ref|ZP_07815876.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
V2475]
gi|375296103|ref|YP_005100370.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|383307901|ref|YP_005360712.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
RGTB327]
gi|385991445|ref|YP_005909743.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5180]
gi|385995059|ref|YP_005913357.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5079]
gi|385998873|ref|YP_005917171.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis CTRI-2]
gi|392386743|ref|YP_005308372.1| helY [Mycobacterium tuberculosis UT205]
gi|392432315|ref|YP_006473359.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
605]
gi|397673972|ref|YP_006515507.1| ATP-dependent RNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|422813122|ref|ZP_16861497.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
CDC1551A]
gi|424804430|ref|ZP_18229861.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis W-148]
gi|424947785|ref|ZP_18363481.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|1731349|sp|Q10701.1|HELY_MYCTU RecName: Full=Probable helicase HelY
gi|13881831|gb|AAK46434.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium
tuberculosis CDC1551]
gi|124601314|gb|EAY60324.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis C]
gi|134150419|gb|EBA42464.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis str.
Haarlem]
gi|148506059|gb|ABQ73868.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Ra]
gi|148721833|gb|ABR06458.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis F11]
gi|253320352|gb|ACT24955.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
1435]
gi|289416517|gb|EFD13757.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T46]
gi|289420671|gb|EFD17872.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis CPHL_A]
gi|289685896|gb|EFD53384.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
02_1987]
gi|289694789|gb|EFD62218.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis EAS054]
gi|289709760|gb|EFD73776.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis GM
1503]
gi|289713773|gb|EFD77785.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
T85]
gi|298495385|gb|EFI30679.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215235|gb|EFO74634.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu001]
gi|308327021|gb|EFP15872.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu002]
gi|308330456|gb|EFP19307.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu003]
gi|308334289|gb|EFP23140.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu004]
gi|308338091|gb|EFP26942.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu005]
gi|308345270|gb|EFP34121.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu007]
gi|308349572|gb|EFP38423.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu008]
gi|308358104|gb|EFP46955.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu010]
gi|308362078|gb|EFP50929.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu011]
gi|308365687|gb|EFP54538.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu012]
gi|323719391|gb|EGB28530.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
CDC1551A]
gi|326903706|gb|EGE50639.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis W-148]
gi|328458608|gb|AEB04031.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|339295013|gb|AEJ47124.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5079]
gi|339298638|gb|AEJ50748.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5180]
gi|344219919|gb|AEN00550.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis CTRI-2]
gi|358232300|dbj|GAA45792.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|378545294|emb|CCE37571.1| helY [Mycobacterium tuberculosis UT205]
gi|379028370|dbj|BAL66103.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
gi|380721854|gb|AFE16963.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
RGTB327]
gi|392053724|gb|AFM49282.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
605]
gi|395138877|gb|AFN50036.1| ATP-dependent RNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|440581568|emb|CCG11971.1| putative ATP-DEPENDENT DNA HELICASE HELY [Mycobacterium
tuberculosis 7199-99]
gi|444895609|emb|CCP44867.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Rv]
Length = 906
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|289750687|ref|ZP_06510065.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92]
gi|289691274|gb|EFD58703.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92]
Length = 906
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|433642272|ref|YP_007288031.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070008]
gi|432158820|emb|CCK56120.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070008]
Length = 906
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|340627105|ref|YP_004745557.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii
CIPT 140010059]
gi|340005295|emb|CCC44451.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii
CIPT 140010059]
Length = 906
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|289574773|ref|ZP_06455000.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85]
gi|289539204|gb|EFD43782.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85]
Length = 906
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQMVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHHC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL+ H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINLV------HRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|31793275|ref|NP_855768.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis AF2122/97]
gi|121637977|ref|YP_978201.1| ATP-dependent DNA helicase helY [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990471|ref|YP_002645158.1| ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|339632127|ref|YP_004723769.1| ATP-dependent DNA helicase [Mycobacterium africanum GM041182]
gi|378771823|ref|YP_005171556.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Mexico]
gi|449064149|ref|YP_007431232.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis BCG str. Korea
1168P]
gi|31618867|emb|CAD96972.1| PROBABLE ATP-DEPENDENT DNA HELICASE HELY [Mycobacterium bovis
AF2122/97]
gi|121493625|emb|CAL72100.1| Probable ATP-dependent dna helicase helY [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224773584|dbj|BAH26390.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|339331483|emb|CCC27176.1| putative ATP-dependent DNA helicase HELY [Mycobacterium africanum
GM041182]
gi|341602015|emb|CCC64689.1| probable ATP-dependent DNA helicase helY [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|356594144|gb|AET19373.1| Putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Mexico]
gi|449032657|gb|AGE68084.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis BCG str. Korea
1168P]
Length = 906
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQMVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL+ H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINLV------HRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|398366119|ref|NP_013502.3| Ski2p [Saccharomyces cerevisiae S288c]
gi|8489004|sp|P35207.2|SKI2_YEAST RecName: Full=Antiviral helicase SKI2; AltName: Full=Superkiller
protein 2
gi|625114|gb|AAB82356.1| Ski2p: Antiviral protein [Saccharomyces cerevisiae]
gi|285813803|tpg|DAA09699.1| TPA: Ski2p [Saccharomyces cerevisiae S288c]
gi|392297900|gb|EIW08999.1| Ski2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1287
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 207/382 (54%), Gaps = 33/382 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYK----- 134
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 135 ---------------DG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
DG G R ++R A+ + + G ++ + + + P+
Sbjct: 557 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 616
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 617 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 793
Query: 354 AGVEP-LVSQFTASYGMVLNLL 374
GV L SQF +Y M+LNLL
Sbjct: 794 MGVPTRLQSQFRLTYNMILNLL 815
>gi|313140229|ref|ZP_07802422.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
gi|313132739|gb|EFR50356.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
Length = 859
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 198/391 (50%), Gaps = 87/391 (22%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T+L+ S
Sbjct: 165 VILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDTKLVVS 224
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTSEVKPY 133
RRPVPL + T+ LL L D +G+ +N +L L+ L + +
Sbjct: 225 ERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAARRRGA 284
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRD 190
+D SR R S+ + A R + P+ V+D L +L D
Sbjct: 285 EDSRSRGRGH--------------------SRGHVPAQRHT--PKRWAVVDELNYL---D 319
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------------L 227
MLP I+FIF+R GCD AV E C L E EM + L
Sbjct: 320 MLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDLKAL 376
Query: 228 ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA
Sbjct: 377 QFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLAL 424
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYE 343
GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V P
Sbjct: 425 GINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFVPAT 484
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
A K ++ PL S F A++ M +NLL
Sbjct: 485 AAALSSKRVY----PLHSSFHATFNMAVNLL 511
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAM 774
+R+ R E S ++F RI +++ + + D + G+ I E ++ LA
Sbjct: 643 ERVQHRYESRTGSVARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAE 702
Query: 775 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 703 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 757
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 758 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 817
Query: 890 LAQI----PKLPDVDQRLQKNAVDASNVMDR 916
L QI P LP L + A A +++R
Sbjct: 818 LQQISAAEPYLPQGSAHLAQVAHKAMELVNR 848
>gi|237785498|ref|YP_002906203.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758410|gb|ACR17660.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 954
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 229/489 (46%), Gaps = 83/489 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
++V + V M+ +++ D + +V+DEVHYL+D RG VWEEII+ + V I+ LS
Sbjct: 109 VIVMTTEVLRNMIYADADSLDNLSHVVMDEVHYLADPERGPVWEEIILNLDESVSIVALS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N ++ WI G T +I RPVPL Y +++PL + ++LS
Sbjct: 169 ATVSNIEQFGEWIKMTRGDTNIIVWEHRPVPLHQYMLVGNSIIPLFSQDNDDATQELSAP 228
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
E+ RR N R+ +R P VI
Sbjct: 229 I----NPELVSRCATAERRSNGRR--------------------------KRPHRPAVI- 257
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-----FRILY 236
L++ MLPAI FIF+R GC+ A L +C + V+L + I+
Sbjct: 258 --GQLQAASMLPAIIFIFSRAGCEGA---------LAQCYTARVQLTTRDEAREILSIID 306
Query: 237 PDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
D P L +G+AAHHAG LP ++ +E+LF RGL+KVVFATETL
Sbjct: 307 ADTADIPQEDLDLMGFRRWRTNLSRGIAAHHAGMLPAFRHIVEKLFVRGLLKVVFATETL 366
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPART VL SL K + LT + Q+ GRAGRRGID G+ V++ P
Sbjct: 367 ALGINMPARTVVLESLVKFNGEAHVDLTPAQYTQLTGRAGRRGIDVLGNAVVLWQPSMDP 426
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L PL+S F Y M +NLL V E++ +L+
Sbjct: 427 EAVAGLASTRTYPLISTFRPGYNMSVNLLNTLGV-------------------EKSHRLL 467
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE--AAYKEMANL 463
E+SF ++ + ++A E Q+ D E+ + + +S L E A + +++
Sbjct: 468 ERSFAQFLANEDVVARAHERRAHQRHADSQHDELL-ELLGHRSENKLPEYVAIRRNLSHE 526
Query: 464 QEELKAEKR 472
+++ +AE R
Sbjct: 527 EKKTQAENR 535
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I +++L +A LR KI DL PA+LA V ++ V E K + P+ +
Sbjct: 793 ARIHNQSDLLIAQCLRRKIWDDLDPAELAGVVSTCVFENRK----SVPGDVEVPTQPLAT 848
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
I + + +E+H + + ++++ + + W +G + A L
Sbjct: 849 AIENTERLWEEIVTDEERHHLPMTRPIETELATAMHQWTAGAPLSYCVQAAAANGTSLTP 908
Query: 877 GDLARLLRRTIDLLAQI 893
GD R R+ ID+L QI
Sbjct: 909 GDFVRSCRQVIDVLNQI 925
>gi|306968223|ref|ZP_07480884.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu009]
gi|308354201|gb|EFP43052.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu009]
Length = 906
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|239917699|ref|YP_002957257.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
gi|281413806|ref|ZP_06245548.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
gi|239838906|gb|ACS30703.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
Length = 994
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 174/554 (31%), Positives = 246/554 (44%), Gaps = 110/554 (19%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L D+ +V+DEVHYL+D RG VWEE+II+ P+ VQ+I LS
Sbjct: 133 VVVMTTEVLRNMLYAQSDALIDLGFVVMDEVHYLADRFRGPVWEEVIIHLPEHVQVISLS 192
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWY----------FSTKTA--------- 102
ATV+NA+E W+ + G T +I S RPVPL + F+ A
Sbjct: 193 ATVSNAEEFGAWLDTVRGATTVIVSEHRPVPLWQHVMAGGRLYDLFAEDIAFEDTADKDG 252
Query: 103 ---LLPLLDEKGKHMNRKLSLN-------YLQLSTSEVKPYKDGGSR------RRNSRKH 146
L P L G+ R+ + + K GG R R H
Sbjct: 253 AALLNPELKRLGEEAERQFQRSDWGRPGRHRDGRGGGPKGRAKGGRRAGRDDGRGRHSSH 312
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFNRRGCD 205
A G H + + S+ P++I L RD +LP I FIF+R GCD
Sbjct: 313 ALDRERPAAGRSGGHDGGERRGPRLSTSR-PEMIRAL----DRDGLLPCITFIFSRAGCD 367
Query: 206 AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI----------------KGLL 249
AAV+ +C + ++L R + L + V E A GL
Sbjct: 368 AAVE---------QCLRAGLDLTTAREKALVAERVEEAARLLPVEDLEILGFWAWRDGLS 418
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G AAHHAG LP +K +E+LF G +K VFATETLA GINMPAR+ V+ L K
Sbjct: 419 RGFAAHHAGMLPPFKEAVEDLFAAGALKAVFATETLALGINMPARSVVIEKLVKFNGENH 478
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
+ +T E Q+ GRAGRRGID GH V++ P L PL S F +Y M
Sbjct: 479 VDITPGEYTQLTGRAGRRGIDVEGHAVVMWRPGLDPAAVAGLASRRTYPLRSSFRPTYNM 538
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL---- 425
NLLA Q G E AR ++E SF + ++ E+
Sbjct: 539 SANLLA-----------------QVG--AERARGILESSFAQFQADRSVVGLAREVRSKQ 579
Query: 426 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 485
++K + + + D + E L++EL A ++ ++ RRR R
Sbjct: 580 ASLEKYEEAMQCHLGD---------------FAEYLTLRKELTAAEKSGSQGRRRA---R 621
Query: 486 FSALKDILKDFENG 499
+A+K+ L D G
Sbjct: 622 LAAVKESLADLAVG 635
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
GE I GE +L+ ++VL++ L P + AAV A LV +G + + P+
Sbjct: 822 GEALRRIYGERDLFTSLVLQDPATDGLTPEEWAAVAALLVYQG---KGETEPGLVPMPTP 878
Query: 818 TVINVINVLD--EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 875
+ V + E R E Q + +E D + W G T R + L
Sbjct: 879 RLARVAEAAERIEERLRTDEAQAR--LEPTPPTDPGLVAPMHRWVRGATLRRTLEGADLA 936
Query: 876 DGDLARLLRRTIDLLAQIPKLP 897
GD R R+ ID+L Q+ +P
Sbjct: 937 AGDFVRWARQVIDVLDQLANVP 958
>gi|433627210|ref|YP_007260839.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140060008]
gi|432154816|emb|CCK52058.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140060008]
Length = 906
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>gi|310287448|ref|YP_003938706.1| Helicase helY [Bifidobacterium bifidum S17]
gi|309251384|gb|ADO53132.1| Helicase helY [Bifidobacterium bifidum S17]
Length = 852
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 196/389 (50%), Gaps = 83/389 (21%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDTKLVVS 217
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSEVKPYKD 135
RRPVPL + T+ LL L D +G+ +N +L QL +
Sbjct: 218 ERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAARRRGA 277
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDML 192
SR R R H S+ + A R + P+ V+D L +L DML
Sbjct: 278 ENSRSRG-RGH-----------------SRGHVPAQRHT--PKRWAVVDELNYL---DML 314
Query: 193 PAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------------LAL 229
P I+FIF+R GCD AV E C L E EM + L
Sbjct: 315 PGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDLKALQF 371
Query: 230 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GI
Sbjct: 372 SRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLALGI 419
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGA 345
NMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V P A
Sbjct: 420 NMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFVPATAA 479
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLL 374
K ++ PL S F A++ M +NLL
Sbjct: 480 ALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAM 774
+R+ R E S ++F RI +++ + + D + G+ I E ++ LA
Sbjct: 636 ERVQHRYESRTGSVARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAE 695
Query: 775 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 890 LAQI----PKLPDVDQRLQKNAVDASNVMDR 916
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|401840058|gb|EJT42980.1| SKI2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 855
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 204/391 (52%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL---STSEVKPYKDGG- 137
+I++ +RPVPL TK L+P++++ + ++ + L ST + D G
Sbjct: 497 YVISTPKRPVPLEINIWTKKELIPVINQNSEFLDANFRKHKEILNGDSTKGIPSKSDTGK 556
Query: 138 ----------------------------SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+ R SR M SN F Q SK +
Sbjct: 557 GGSTARGGRGGGNTRGGRGGRGNSTRGNANRGGSRGAGAMGSNK-RKFFTQDGPSKKTW- 614
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
P++++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +
Sbjct: 615 -------PEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 664
Query: 230 KRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
++ R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 665 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 724
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++
Sbjct: 725 FAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQFT +Y M+LNLL
Sbjct: 785 SLATFKEVTMGVPTRLQSQFTLTYNMILNLL 815
>gi|302308119|ref|NP_984927.2| AER067Cp [Ashbya gossypii ATCC 10895]
gi|299789304|gb|AAS52751.2| AER067Cp [Ashbya gossypii ATCC 10895]
gi|374108150|gb|AEY97057.1| FAER067Cp [Ashbya gossypii FDAG1]
Length = 1282
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 199/367 (54%), Gaps = 18/367 (4%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
DV+ ++ DEVHY++D RG VWEE+II P V+ I LSATV N E A WIG+ H
Sbjct: 446 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPSHVKFILLSATVPNTFEFADWIGRTKHKNI 505
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS-EVKPYKDGGSRR 140
++++ +RPVPL K ++P+++E + + + S + L+ S K S R
Sbjct: 506 YVLSTPKRPVPLEINVWAKDTMIPVINENREFLAKNFSKHADLLANSGSSNTAKKTASTR 565
Query: 141 RNSRKHADMNSNNIVT-------SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
N +N ++T + G ++ S + + P++++ +LRSRD+LP
Sbjct: 566 GNKAPTRGDKANKVITKGSRGVGAKGSNRSSFFKRDGPNKQTWPRLVN---YLRSRDLLP 622
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLL 249
+ F+F+++ C+ +LE + E S+V E ++ R + D + ++ LL
Sbjct: 623 VVIFVFSKKRCEDYAGFLEGTDFSTAKERSQVYMFIEKSIARLKKEDRDVPQIQQVRSLL 682
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+A HH G LPI K IE LF +G VKV+FATET A G+N+P RT V S + K +G
Sbjct: 683 ERGIAIHHGGLLPIIKELIEMLFAKGFVKVLFATETFAMGLNLPTRTVVFSEIEKHDGNG 742
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASY 367
L+ E QMAGRAGRRG D G V+++ + K + GV L SQF +Y
Sbjct: 743 LRYLSPGEFTQMAGRAGRRGKDKVGTVIVMSYNHPLDVTSFKDVTLGVPTRLKSQFRLTY 802
Query: 368 GMVLNLL 374
M+LNLL
Sbjct: 803 NMILNLL 809
>gi|227833093|ref|YP_002834800.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262182417|ref|ZP_06041838.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227454109|gb|ACP32862.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 937
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 228/474 (48%), Gaps = 76/474 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
I+V + V M+ + SG D + +V+DE+H+L+D SRG VWEE+I+ + V II LS
Sbjct: 103 ILVMTTEVLRNMIYAGSGALDRLTHVVMDEIHFLADASRGAVWEEVILNLEEHVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSL 120
ATV+N++E W+ + G T++I + +RPVPL + + PL + G +N +L+
Sbjct: 163 ATVSNSEEFGRWLTTVRGDTKVIVTDKRPVPLDQWMMVGRKIYPLFEPNSGGQVNTELAR 222
Query: 121 NYLQLSTSEVKPYK-DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
+L + + D R + R A ++ ++ RRS P+
Sbjct: 223 RIQRLEAGDTDSGRADYAQNRASFRARARHKGGG-----------RSDRHSDRRSGAPRA 271
Query: 180 ID---------TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLL-DECEMSEVE-- 226
D L L++ +MLPAI FIF+R GCD A+ Q L +L + E +E++
Sbjct: 272 QDRYRPLGRPEVLKELQAMEMLPAITFIFSRAGCDGALYQCLRSRMVLTSQEEATEIKAI 331
Query: 227 ---------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271
L KR+R + L +G AAHHAG LP ++ +EELF
Sbjct: 332 VDTGVEGIPEEDLKVLDFKRWR------------EALSRGFAAHHAGMLPAFRHIVEELF 379
Query: 272 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331
+GLV+ VFATETLA GINMPART VL L K + LT + Q+ GRAGRRGID
Sbjct: 380 VKGLVRAVFATETLALGINMPARTVVLEKLVKFNGEAHVDLTPGQYTQLTGRAGRRGIDT 439
Query: 332 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
G+ V+ P L PL+S F Y M +NLL
Sbjct: 440 LGNAVVQWAPAMDPTAVAGLASTRTYPLISTFEPGYNMAINLLGML-------------- 485
Query: 392 LQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
+++ +L+E+SF + ++ E+ + + L +++ D A+D
Sbjct: 486 -----GFDDSLRLLEKSFAQFQADGSVVEETREIERAEHRVRELRAQL-DQAVD 533
Score = 46.2 bits (108), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDIN------TQVIFPLGET 760
+K+ R + +L ++E+ + + F RI +++ E ++ VI GE
Sbjct: 715 QKLARRERELHKLEAKVERATDTLGRTFERIVDLLAEMDYVEFEGYGEDREPVITDEGER 774
Query: 761 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 820
A I E++L +A L+ I DL PA+LA V + V E K ++ EP
Sbjct: 775 LAKIHSESDLLVAQCLKRGIWNDLDPAELAGVASLCVFENRK-------TTRGEPGAASD 827
Query: 821 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 872
+ + +D + EL +++H + + F+ + W +G M
Sbjct: 828 AMADAMDATWRIYTELVADEKRHNLPQTREPEPAFALAIHQWTAGAPLAYCMAAANESGA 887
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ IDLL Q+ K D+ +++NA A + + R
Sbjct: 888 ELTPGDFVRWCRQVIDLLQQVAKTGYEDE-IRRNARRAIDAIQR 930
>gi|311113613|ref|YP_003984835.1| helicase [Rothia dentocariosa ATCC 17931]
gi|310945107|gb|ADP41401.1| helicase [Rothia dentocariosa ATCC 17931]
Length = 973
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 218/449 (48%), Gaps = 69/449 (15%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES L + +++DEVHYL+D RG VWEE II+ P+ V +I LS
Sbjct: 133 IVVMTTEVLRNMLYAESTTLIGLGYVIMDEVHYLADRFRGAVWEEAIIHLPEHVTVISLS 192
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL-------DEKGKHM 114
ATV+N +E W+ + G T++I S RPVPL + ++ L E
Sbjct: 193 ATVSNVEEFGAWLDTVRGDTDVIVSEHRPVPLWQHLMVGNRIIDLFVPDETSQQEASPTK 252
Query: 115 NRKLSLNYLQLSTS---------EVKPYKDGGSRRRNSRKHA-------------DMNSN 152
RK LQ + + +++P G RR R +A D +++
Sbjct: 253 RRKNHTKSLQNAPTGLRINPLLKQLRP----GFRRHTPRHNAPKRERFRRGRNRHDKHTH 308
Query: 153 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 212
+ S +H+ N + ++P+ + L + +LPAI FIF+R CD AV
Sbjct: 309 ALERS--RHKTFTQDANVLSPHRIPRP-EMARILDKQGLLPAICFIFSRAACDDAVTQCV 365
Query: 213 DCNLLDECE---------MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 263
+ N++ E ++E L R L+ E GL++GVAAHHAG LP++
Sbjct: 366 NANIVLTTEEQQQTIRAYIAETTAHLDN-RDLHALGYYE-WRDGLIRGVAAHHAGLLPLF 423
Query: 264 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 323
K +E LF +GL+K+VFATETLA GINMPART +L L+K + +T E Q+ GR
Sbjct: 424 KEVVETLFAQGLIKLVFATETLALGINMPARTVMLEKLTKFNGETHVDITPGEYTQLTGR 483
Query: 324 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLS 383
AGRRGID GH V++ P E+ L PL S F +Y M NL+A
Sbjct: 484 AGRRGIDLEGHAVVLWRPGLVPEQVATLASTRTYPLNSSFRPTYNMAANLIAAYGA---- 539
Query: 384 NESDDMKALQAGRSLEEARKLVEQSFGNY 412
E RK++E SF +
Sbjct: 540 ---------------ERTRKILESSFAQF 553
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 765
E+ ++L A ++ L ++I + + + F RI+ ++ E + ++ L A+R
Sbjct: 757 ERWRKLNAETEGLRRQITRRTNTIAQVFNRIAKLLTEYGYVTADSHNGLKLTTKGEALRK 816
Query: 766 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTV 819
GE +L ++ L L DL PA +AA A+L +G I++ + S+ T+
Sbjct: 817 LYGEKDLLTSICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRYPHPSLQVSIATI 876
Query: 820 INVINVLDEHRSSFLELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
++ L+ H +E+H + + P C D + WA G+ + + D L GD
Sbjct: 877 NRELDHLNVH-------EERHELDQTPPC-DLGLVTPIYRWARGMHLAKALEDTGLAAGD 928
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID L QI +P + L+ + A ++ R
Sbjct: 929 FVRWAKQVIDALDQIAHIPTISPNLRASCEKAIALIRR 966
>gi|386839157|ref|YP_006244215.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|374099458|gb|AEY88342.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|451792449|gb|AGF62498.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis TL01]
Length = 950
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 207/402 (51%), Gaps = 48/402 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + ++L+ E +P Y+D
Sbjct: 216 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLVRLARMEATRPSYQD--- 271
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + + P+VI+ L S +LPAI FI
Sbjct: 272 -RRRGRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDSEGLLPAITFI 317
Query: 199 FNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRI-------LYPDAVREPAIKGLLK 250
F+R C+AAVQ L L++ E E AL R L+ E ++GL +
Sbjct: 318 FSRAACEAAVQQCLYAGLRLNDEEAREQVRALVEERTASIPTEDLHVLGYYE-WLEGLER 376
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 377 GIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHA 436
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
+T E Q+ GRAGRRGID GH V++ E L PL S F SY M
Sbjct: 437 DITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYNMA 496
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+NL+ Q GR +R+L+E SF +
Sbjct: 497 VNLVE-----------------QFGR--HRSRELLETSFAQF 519
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR ++ L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRERVWEGLAPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAVLGE 844
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDGLEEEFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 878 DLARLLRRTIDLLAQI 893
D R ++ ID+L QI
Sbjct: 902 DFVRWCKQVIDVLGQI 917
>gi|319949284|ref|ZP_08023364.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319437074|gb|EFV92114.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 886
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 167/501 (33%), Positives = 234/501 (46%), Gaps = 89/501 (17%)
Query: 5 IVVFSCSV--GMV-SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S+ S L D+D +V+DE+HYL D SRG VWEEII+ V ++ LS
Sbjct: 111 IVVMTTEVLRNMIYSASSALHDLDCVVMDEIHYLGDRSRGVVWEEIILTLDPAVLLVGLS 170
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
AT++N DEL WI +I G T ++ S RPVPL T L+P+
Sbjct: 171 ATLSNTDELGDWITEIRGDTAVVLSEHRPVPLAHMLYTDGDLVPVR-------------A 217
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
Y D R SR R+Q + D
Sbjct: 218 AADQRRRARSGYHD---ERMASRP---------------------------RAQWARRQD 247
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-LDECE-----MSEVELALKRFRIL 235
+ L +LPAI+F+F+R GCD AV + L L E S V+ A+ +
Sbjct: 248 VIERLDDEHLLPAIYFVFSRAGCDGAVAQMRRARLRLTTGEEARRIASHVDSAVAQVPQP 307
Query: 236 YPDAVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
DA+ A + GL+ G+AAHHAG LP++++ +EELF GL+KVVFATETLA GI+MPAR
Sbjct: 308 DLDALDFAAFRAGLVNGLAAHHAGMLPLFRTIVEELFSAGLIKVVFATETLALGIHMPAR 367
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
VL +K + LTS E Q+ GRAGRRGID +G V++ P + L+
Sbjct: 368 AVVLEKTTKFNGDTHMMLTSAEYSQITGRAGRRGIDTKGTAVVLDQPDLDLDALAALVDT 427
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S FT Y M +NL+ Q G +EEA L+ +SF +
Sbjct: 428 PRFPLHSAFTPDYSMAVNLVE-----------------QLG--VEEATTLIGRSFAQFQT 468
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL-----KA 469
+++ + + E D + + + + D A E L+ EL KA
Sbjct: 469 DRTLVSRSRAIERRSDERDRMRASLEEAGGD---------ADLDEYMGLRAELSRLERKA 519
Query: 470 EKRFRTELRRRMELKRFSALK 490
EK R + R++ R + LK
Sbjct: 520 EKATRDD---RLDSVRSAMLK 537
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 40/241 (16%)
Query: 678 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 737
K+ARL ++ AR + D T E + ++R + ++ + G+ E ++
Sbjct: 663 KLARLHERWARAD--------ADVAALTAEVDADADSLARRFRRIVDLLRHLGYLE--KV 712
Query: 738 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
V+ T A G A + E +L++A LR + L A LAAV A++V
Sbjct: 713 DGVLRATDA-----------GHLLAGVHTEQDLFVAECLRRGVWRGLDAAGLAAVIATIV 761
Query: 798 SEGIKVRLWKNNSSIYEPSTTVI-NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 856
+ + +S+I EPS V+ + + + + E++ H + LD+ + ++
Sbjct: 762 AHP------RTDSAIREPSDEVLRSALAETERVAADVAEVERAHRLPTTPDLDAGLAPVL 815
Query: 857 EAWASG--------LTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD-QRLQKNA 907
W SG +W+E L GD R R +D+LAQ+ ++ + D R ++A
Sbjct: 816 HHWVSGGALASILAASWQE---GVELTAGDFVRSARLVVDVLAQVGQVAEPDLARTARSA 872
Query: 908 V 908
V
Sbjct: 873 V 873
>gi|345853069|ref|ZP_08805984.1| helicase [Streptomyces zinciresistens K42]
gi|345635471|gb|EGX57063.1| helicase [Streptomyces zinciresistens K42]
Length = 935
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 165/503 (32%), Positives = 242/503 (48%), Gaps = 81/503 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 141 LLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D
Sbjct: 201 TQVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEATRPSYQD--- 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + P+VI+ L + +LPAI FI
Sbjct: 257 -RRRGRAMREADRER----------ERRQRTRVWTPGRPEVIE---RLDAEGLLPAITFI 302
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVRE-PA--------- 244
F+R C+AAVQ +C + + L A +R R L + PA
Sbjct: 303 FSRAACEAAVQ---------QCLFAGLRLNDDEARERVRALVEERTSAIPAGDLHVLGYY 353
Query: 245 --IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 354 EWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLV 413
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
K +T E Q+ GRAGRRGID GH V++ E L PL S
Sbjct: 414 KWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGSSPEHLAGLAGTRTYPLRSS 473
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 474 FKPSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGIS 514
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
++ + ++ D ++ D +++ A L+ ELK + TEL R+
Sbjct: 515 RQVQRNEEGLDGYKESMTCHLGD-----------FEDYARLRRELKDRE---TELARQGA 560
Query: 483 LKRFSALKDILKDFENG---HLP 502
+R S L+ + G H+P
Sbjct: 561 SQRRSEAAVALEKLKPGDVIHVP 583
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H+ E H + ++ARL+K I R D ++ E + RL + L
Sbjct: 671 HIPPERHRKRRSQAADDREIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSHL 728
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 778
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR
Sbjct: 729 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLYGELDLLASECLRE 785
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------TVINVINVLDEHRS 831
++ L PA+LAA ++LV E R+ + + PS + + LD
Sbjct: 786 RVWEGLGPAELAACVSALVYE---ARVGDDAMAPKLPSGRAKAALGETVRIWGRLDALEE 842
Query: 832 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 890
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 843 DFGISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVL 899
Query: 891 AQI-PKLPDVDQRLQKNAVDA 910
QI P + KNA A
Sbjct: 900 GQIAAAAPAEGSTVAKNARKA 920
>gi|350569109|ref|ZP_08937506.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
gi|348660687|gb|EGY77394.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
Length = 919
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 230/492 (46%), Gaps = 63/492 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ +V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPQVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLL-DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPLT + + L L D + +N +L + ++ E + +D R R
Sbjct: 187 ERRPVPLTQHVAVGRRLHDLFGDRRLTDVNPEL----ISIAKEESRFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQ-----------VPQVIDTLWHLRSRDMLPA 194
N SFG + S A RR + P I + L+ ++LPA
Sbjct: 243 KGKRN-----VSFGSGRFGGAS--AQRRGRGGRDKPRGPRNQPSRIQVVRSLQRANLLPA 295
Query: 195 IWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKG 247
I F+F+R GCDAAV L + +L+ + E ++ +R D R +
Sbjct: 296 IIFVFSRAGCDAAVSQLLNTDLVLTSQREARQLRRIAERHGEGLTDEERRAVGWNHFVAA 355
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 356 FERGIAAHHAGLLPVLKAIVEEGFVAGLLKVVIATETLALGINMPARTVVLEKLVKYNGQ 415
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
+T E Q+ GRAGRRGID +GH V+ L PL S F +Y
Sbjct: 416 THADITPGEYTQLTGRAGRRGIDTQGHAVVCWQAGMDPRAVAGLASRRTYPLNSAFVPTY 475
Query: 368 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 427
M +NL+ GR E+AR L+E SF + + + K
Sbjct: 476 NMAVNLVG-----------------SMGR--EKARDLLEHSFAQFQTDRRLGGSAVRSRK 516
Query: 428 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 487
Q E D + D + E A ++EE+ + + LR+ +R S
Sbjct: 517 TQSEIDAYLKAAHCEHGD-----------FAEYARMREEIGELEHEQARLRKG---ERPS 562
Query: 488 ALKDILKDFENG 499
+ D L ++G
Sbjct: 563 QVADSLSRLDSG 574
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 11/190 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL RS+R + S +F RI V+ L Q + G + I
Sbjct: 706 ERAMRLSRRSERELAKARAKATSIATQFERIVLVLEALGYLGEGGQDVTDAGRMLSGIYS 765
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTVINVI 823
E +L A +R + L QLAAV +++V E G + L + E + + + +
Sbjct: 766 ELDLVTAEAIRRGVFDKLDYPQLAAVLSTIVHESRPGDRGHLHRMPDHGSESAESQLRAV 825
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
R+ L+ H +E P LD F+ M AWA+G ++ D + GD R +
Sbjct: 826 ------RAEIGLLERDHRIERPRDLDIGFAEMAYAWAAGAGLETVLDD--MSAGDFVRRV 877
Query: 884 RRTIDLLAQI 893
R+ DL QI
Sbjct: 878 RQVCDLAGQI 887
>gi|306822741|ref|ZP_07456119.1| helicase [Bifidobacterium dentium ATCC 27679]
gi|309801006|ref|ZP_07695138.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
gi|304554286|gb|EFM42195.1| helicase [Bifidobacterium dentium ATCC 27679]
gi|308222542|gb|EFO78822.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
Length = 868
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 238/487 (48%), Gaps = 83/487 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T+LI S
Sbjct: 165 VILDEVHYLADRFRGPVWEEVIIHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVS 224
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGG 137
+RPVPL + T+ L+ L + H ++ + LN +L + + + G
Sbjct: 225 EKRPVPLEQHVLVQADDRTEPELIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQG 283
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPA 194
++R RK + + S + + R P+ V+D L L DMLP
Sbjct: 284 AQRPERRKGKGKGPWH----------DRESSHKVER-HTPKRWAVVDELNFL---DMLPG 329
Query: 195 IWFIFNRRGCDAAVQYLEDCNL--------------LDECEMSEVELALKRFRILYPDAV 240
I+FIF+R GCD AV+ + L +DE M E +L+ + + L+
Sbjct: 330 IYFIFSRNGCDQAVEQCINAGLELTSNGEVRRIRRIVDE--MIEGQLSQEDLKALHFSQF 387
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
R L +G A HHAG + +++ +E LF+ GLVKVVFATETLA GINMPAR V+
Sbjct: 388 R----FALEEGFAPHHAGMIALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEK 443
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 356
L K +G + LT E Q+ GRAGRRGID GH V+V P A K ++
Sbjct: 444 LEKYDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY--- 500
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
PL S F ++ M +NLL N SD E AR ++ SF + +
Sbjct: 501 -PLHSSFRPTFNMAVNLL---------NSSD----------YETARITLDHSFAQWEANE 540
Query: 417 V---MLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ A D L K ++ T E D A + R LSE E L+ E+
Sbjct: 541 SAWQLEAQMDTLKKALEGYEHAFTCEFGDFADFMRLRMRLSELEKNERRRLKHEV----- 595
Query: 473 FRTELRR 479
FRT+ R
Sbjct: 596 FRTQSER 602
>gi|364506256|pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 246/479 (51%), Gaps = 60/479 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 206
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYK----- 134
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 207 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 266
Query: 135 ---------------DG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
DG G R ++R A+ + + G ++ + + + P+
Sbjct: 267 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 327 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 383
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 384 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 443
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ + K +
Sbjct: 444 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 503
Query: 354 AGVEP-LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GV L SQF +Y M+LNLL ++AL+ ++++ SF
Sbjct: 504 MGVPTRLQSQFRLTYNMILNLLR-------------IEALR-------VEEMIKYSFSEN 543
Query: 413 VGSNVMLAAKDELCKIQKETDVL---TSEISDDAIDRKSRRLLSEAAYKE-MANLQEEL 467
+ + ++ +Q+E + + EI D+ I++ +L AYKE NL +E+
Sbjct: 544 AKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELML---AYKEATVNLMQEM 599
>gi|213626368|gb|AAI71377.1| Skiv2l protein [Danio rerio]
Length = 1249
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 191/365 (52%), Gaps = 37/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E + WIG+I +
Sbjct: 424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHI 483
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y STKT L LLD G + + Y
Sbjct: 484 YVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGY--------------YAA 529
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ + KHA SFG +S+++ A + V Q + L +L R P +
Sbjct: 530 VEAKKERTSKHAQ--------SFGTKNVSQHNTTASQDRAVWQTL--LNYLSQRQQTPVV 579
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK- 250
F F+R CD + L +L E SE+ L++ R+ P I + LLK
Sbjct: 580 AFTFSRTRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKR 639
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 640 GIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFR 699
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V +L + E ++ L SQF +Y M
Sbjct: 700 NLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTM 759
Query: 370 VLNLL 374
+LNLL
Sbjct: 760 ILNLL 764
>gi|152965851|ref|YP_001361635.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151360368|gb|ABS03371.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 931
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 221/446 (49%), Gaps = 51/446 (11%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S L D + +V+DEVHYL+D SRG VWEE+II+ P +V ++ LS
Sbjct: 119 VVVMTTEVLRNMLYAGSSLLDGLGYVVMDEVHYLADRSRGAVWEEVIIHLPADVLVVSLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL-DEKGKHM-NRKLS 119
ATV+NA+E W+ + G TE++ S RPVPL + + T L L D G + + S
Sbjct: 179 ATVSNAEEFGAWLDTVRGDTEVVVSEHRPVPLWQHLAVGTRLYDLFTDPDGDPLEGDEGS 238
Query: 120 LNYLQLSTSEVKPYKDGGSRR--RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
L + + V P SR+ R R R +
Sbjct: 239 L----VPGAIVNPELVAMSRQQLRTDRLAGPGGRGRRRGQQRPGPGGSRPPGIGRPASRA 294
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP 237
Q++DTL + +LPAI FIF+R GCDAAV+ L ++ E +R R +
Sbjct: 295 QILDTL---DAAGLLPAITFIFSRAGCDAAVEQCVAWGL----RLTTPEEG-RRIRAVAE 346
Query: 238 DAVRE-PA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+ E P+ ++GL +G+AAHHAG LP++K +E LF GLVK VFATETL
Sbjct: 347 ERCAEIPSSDLAVLGYWEWLEGLERGLAAHHAGLLPVFKETVEHLFAAGLVKAVFATETL 406
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A G+NMPAR+ VL L K + +T E Q+ GRAGRRGID GH V++ +
Sbjct: 407 ALGVNMPARSVVLERLVKWNGQTHVDVTPGEYTQLTGRAGRRGIDVEGHAVVLWSQQTDP 466
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L PL S F +Y M +NL+ Q GR E AR ++
Sbjct: 467 EAVAGLASRRTFPLRSSFRPTYNMAVNLVE-----------------QVGR--ERARDIL 507
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQKE 431
E SF + ++ ++ K Q+E
Sbjct: 508 ETSFAQFQADRAVVGQAQQI-KNQQE 532
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 706 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 765
EEK++R ++ L ++IE + + F R+ +++ E L + + G T I
Sbjct: 720 EEKLRR---DTQGLQRKIEGRTGTIARTFDRVCDLLAELGYLSADGLSVTDEGRTLRRIN 776
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
E +L +A LR+ L PA LAA ++LV E + + + +
Sbjct: 777 AETDLLVAQCLRHGAWSGLSPADLAAAVSTLVHESRRDEGGRPDRIPRRAEAAIATT--- 833
Query: 826 LDEHR--SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883
HR S + ++ H V D + V WASG E++ + L GD R
Sbjct: 834 ---HRLWSDLTDREDHHKVPATREPDPGLAWAVHRWASGHRLDEVLREADLAAGDFVRRC 890
Query: 884 RRTIDLLAQI 893
++ +DLL Q+
Sbjct: 891 KQLVDLLDQV 900
>gi|421734870|ref|ZP_16173919.1| helicase [Bifidobacterium bifidum LMG 13195]
gi|407077204|gb|EKE50061.1| helicase [Bifidobacterium bifidum LMG 13195]
Length = 852
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 198/392 (50%), Gaps = 89/392 (22%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDTKLVVS 217
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTSEVKPY 133
RRPVPL + T+ LL L D +G+ +N +L L+ L + +
Sbjct: 218 ERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAARRRGA 277
Query: 134 KDGGSR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
++ SR R +SR HA + P+ V+D L +L
Sbjct: 278 ENSRSRGRGHSRGHAPAQRH-----------------------TPKRWAVVDELNYL--- 311
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------------ 226
DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 312 DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDLKA 368
Query: 227 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA
Sbjct: 369 LQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLA 416
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPY 342
GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V P
Sbjct: 417 LGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFVPA 476
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
A K ++ PL S F A++ M +NLL
Sbjct: 477 TAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAM 774
+R+ R E S ++F RI +++ + + D + G+ I E ++ LA
Sbjct: 636 ERVQHRYESRTGSVARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAE 695
Query: 775 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 890 LAQI----PKLPDVDQRLQKNAVDASNVMDR 916
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|349580095|dbj|GAA25256.1| K7_Ski2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1287
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 205/382 (53%), Gaps = 33/382 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L ++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESANGAPSKTDNGR 556
Query: 136 ---------GGSRRRNSRKHADMNSN---NIVTSFGQHQLSKN-----SINAIRRSQVPQ 178
GGS R R D ++ N S G + N + + + P+
Sbjct: 557 GGSTARGGRGGSNTRGGRGGRDNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 616
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 617 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 793
Query: 354 AGVEP-LVSQFTASYGMVLNLL 374
GV L SQF +Y M+LNLL
Sbjct: 794 MGVPTRLQSQFRLTYNMILNLL 815
>gi|323447086|gb|EGB03043.1| hypothetical protein AURANDRAFT_12569 [Aureococcus anophagefferens]
Length = 387
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 173/323 (53%), Gaps = 62/323 (19%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV +V DE HY++D RGTVWEE ++ CP +I+ LSATV+NA +AGW+ IHG T+
Sbjct: 115 DVFAVVFDEFHYMNDAQRGTVWEESVVGCPATARIVALSATVSNARSVAGWMASIHGPTD 174
Query: 83 LITSSRRPVPLTWYFSTKTALL-PLLD---EKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RPVPL + F+ A+L P LD EK K + R D
Sbjct: 175 VVETDFRPVPLRYEFAGDGAVLNPALDKPREKPKRVGR------------------DKFD 216
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR M S I L +L+ RD LPAI+F+
Sbjct: 217 RRGGKFDDGAMPSREI----------------------------LKNLQKRDRLPAIFFV 248
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR--------ILYPDAVREPAIKGLLK 250
F+R+GC+ + LLD + E A KR R + D+ RE + L +
Sbjct: 249 FSRKGCENEAAHCGSLQLLD---VDEETRARKRIRAWALENEDVARLDSERE-RVDLLTR 304
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVAAHHAG LP +K+ +EELF+ GLVK FATETLAAG+N+PART V++SL KR G
Sbjct: 305 GVAAHHAGLLPQYKTLVEELFRDGLVKACFATETLAAGVNLPARTTVVTSLVKRGDDGME 364
Query: 311 QLTSNELFQMAGRAGRRGIDNRG 333
LT++ L QMAGRAGRRG D G
Sbjct: 365 PLTTSALLQMAGRAGRRGKDAAG 387
>gi|227496136|ref|ZP_03926442.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834370|gb|EEH66753.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 959
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 195/380 (51%), Gaps = 24/380 (6%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ SS L + +V+DEVHYL+D RG VWEE+II+ +VQ++ LSATV+NA+E W
Sbjct: 131 LYSSSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLDPQVQVVSLSATVSNAEEFGDW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---------EKGKHMNRKLSLNYLQ 124
+G + GKT ++ S RPVPLT + LL L ++ H + LN
Sbjct: 191 LGHVRGKTAVVVSEHRPVPLTQHMMVGRRLLDLYSVPVALEDAHQEASHAAQP-PLNPDL 249
Query: 125 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 184
L G SR A +++ H+ + +A R + P + +
Sbjct: 250 LKAVRSARRAAAGQAGGYSRG-ARGGTHDTGGWRAPHRGRDGARSA--RLRPPSRLAVVD 306
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVRE 242
L +LPAI F+F+R GC+ AV L +L + E ++ + R P A +
Sbjct: 307 ALEQAHLLPAIVFVFSRAGCEQAVSQLAAAGVDLTTQAEAEQIREVIDRRTSEIPAA--D 364
Query: 243 PAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
+ G L +G AAHHAG LP++K +EELF GLVKVV+ATETLA GINMPART
Sbjct: 365 LGVLGFHSWAHALQRGYAAHHAGLLPVFKETVEELFSAGLVKVVYATETLALGINMPART 424
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
VL SL K S + LT E Q+ GRAGRRGID GH V++ L
Sbjct: 425 VVLESLRKWNGSAHVTLTPGEYTQLTGRAGRRGIDVEGHAVVLAADDVEPAFVSSLASRR 484
Query: 356 VEPLVSQFTASYGMVLNLLA 375
PLVS F +Y M +NLL+
Sbjct: 485 TYPLVSAFRPTYNMAVNLLS 504
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 714 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ-------VIFPLGETAAAIRG 766
A+++RLT+RIE+ + + F + V+ L Q + G A +
Sbjct: 734 AQAERLTERIERRTGTIARLFDAVCQVLVALGYLRPVAQQEPDGELAVTGAGRVLARVYA 793
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + L ++LA ++ V E + + + + S ++ L
Sbjct: 794 ERDLLIAQCLRQGVWQGLGSSELAGAVSACVYE-PRANVASLSLPVAPGSALGRSLRQEL 852
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
D R +L+ +E+ + + V+AWA G + +++ D + GD R R+
Sbjct: 853 DVARR-INDLEALARLELSAGAEPAMAAGVQAWAEGASLAQVLEDSEMTAGDFVRWSRQL 911
Query: 887 IDLLAQIPKL-PDV--DQRL-------QKNAVDASNVMDR 916
+D+L Q+ L PD DQ L + A +AS +DR
Sbjct: 912 LDVLGQLATLQPDSREDQALGSQVAEVSRTAAEASLDVDR 951
>gi|300741521|ref|ZP_07071542.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
gi|300380706|gb|EFJ77268.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
Length = 973
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 213/446 (47%), Gaps = 63/446 (14%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ +ES L + +++DEVHYL+D RG VWEE II+ P+ V +I LS
Sbjct: 133 IVVMTTEVLRNMLYAESTTLIGLGYVIMDEVHYLADRFRGAVWEEAIIHLPEHVTVISLS 192
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLS 119
ATV+N +E W+ + G T++I S RPVPL + ++ L DE + ++ S
Sbjct: 193 ATVSNVEEFGAWLDTVRGDTDVILSEHRPVPLWQHLMVGNRVIDLFVPDETSQ---KEAS 249
Query: 120 LNYLQLSTSEVKPYKDGGSR------------RRNSRKHADMNSNNIVTSFGQHQLSKNS 167
+ + ++ G R RR++ +H +H ++
Sbjct: 250 PTKRRKNHTKSPQNAPAGLRINPLLKQLRPGFRRHTSRHNAPKRERFRRGRNRHDKHTHA 309
Query: 168 INAIRRSQVPQVIDTLWHLR-----------SRDMLPAIWFIFNRRGCDAAVQYLEDCNL 216
+ R Q D L R + +LPAI FIF+R CD AV + N+
Sbjct: 310 LERSRHKTFTQDTDVLRPHRISRPEMARILDKQGLLPAICFIFSRAACDDAVTQCVNANI 369
Query: 217 LDECEMSEVELALKRF----------RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 266
+ E E E ++ + R L+ E GL++GVAAHHAG LP++K
Sbjct: 370 VLTTE--EQEQTIRAYIAETTAHLDNRDLHALGYYE-WRDGLIRGVAAHHAGLLPLFKEV 426
Query: 267 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGR 326
+E LF +GL+K+VFATETLA GINMPART +L L+K + +T E Q+ GRAGR
Sbjct: 427 VETLFAQGLIKLVFATETLALGINMPARTVILEKLTKFNGETHVDITPGEYTQLTGRAGR 486
Query: 327 RGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNES 386
RGID GH V++ P E+ L PL S F +Y M NL+A
Sbjct: 487 RGIDLEGHAVVLWRPGLVPEQVATLASTRTYPLNSSFRPTYNMAANLIAAY--------- 537
Query: 387 DDMKALQAGRSLEEARKLVEQSFGNY 412
E RK++E SF +
Sbjct: 538 ----------GAERTRKILESSFAQF 553
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 765
E+ ++L A ++ L ++I + + + F RI+ ++ E + ++ L A+R
Sbjct: 757 ERWRKLNAETEGLRRQITRRTNTIAQVFNRIAKLLTEYGYVTADSHNGLKLTTKGEALRK 816
Query: 766 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTV 819
GE +L ++ L L DL PA +AA A+L +G I++ + S+ P T+
Sbjct: 817 LYGEKDLLTSICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRYPHPSLQAPIATI 876
Query: 820 INVINVLDEHRSSFLELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ L+ H +E+H + + P C D + WA G+ + + D L GD
Sbjct: 877 NRELARLNAH-------EERHKLDQTPPC-DLGLVTPIYRWARGMHLAKALEDTDLAAGD 928
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID L QI +P + L+ + A ++ R
Sbjct: 929 FVRWAKQVIDALDQIAHIPTISPNLRASCEKAIALIRR 966
>gi|452945274|gb|EME50799.1| ATP-dependent RNA helicase HelY [Amycolatopsis decaplanina DSM
44594]
Length = 925
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 215/441 (48%), Gaps = 53/441 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S + ++ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 134 LYAGSSTIGELAYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKP 132
+ ++ G T ++ RPVPL + L+ L + +H +L +N L
Sbjct: 194 LVEVRGDTTVVVDEHRPVPLWQHMLVGNRLMDLFAGQEEHAPGTELRINPSLL------- 246
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
R+ ++ + + + + R + P DT+ L + +L
Sbjct: 247 -----------RRTEEVGRGFAPAGARGQRGRRGVPSRMPRFRPPSRTDTVERLDNAGLL 295
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLL----DECEMSEVELALKRFRILYPDAVREPAIKG- 247
PAI FIF+R GCDAAV L DE E + +R + L P+ + + G
Sbjct: 296 PAIVFIFSRAGCDAAVGQCVRSGLRLNGPDEVEKVR-RIVAERTKDL-PEG--DLGVLGY 351
Query: 248 ------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
L +G+A HHAG LP +K +EELF +GLVKVVFATETLA GINMPART VL L
Sbjct: 352 WEWREALERGIAGHHAGLLPAFKETVEELFVQGLVKVVFATETLALGINMPARTVVLERL 411
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K + LT E Q+ GRAGRRGID GH V+ P ++ L PL S
Sbjct: 412 VKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGIDPKQVGGLASTRTYPLRS 471
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
F Y M +NL+A Q G E AR L+EQSF + ++
Sbjct: 472 SFRPGYNMAVNLVA-----------------QVG--AEAARDLLEQSFAQFQADRSVVGT 512
Query: 422 KDELCKIQKETDVLTSEISDD 442
+ + ++ TS I+ D
Sbjct: 513 ARRIERNKEALRGYTSAITGD 533
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV-----IFPLGETA 761
E+ +RL A + +L +++ S + F RI ++ E L + + G+
Sbjct: 702 ERYQRLTAETGQLERKVAATTHSLARAFDRILRLLGERGYLGPESNGDGENRVTEHGKRL 761
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
+ E++L A +R+ + L PA+LAAV ++LV E + EP
Sbjct: 762 TRLYSESDLLAAECIRHDVWKGLAPAELAAVVSTLVFEA-------RRDTAGEPRLPAGK 814
Query: 822 VINVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----A 873
V++ ++EL E +H ++ D+ F+ V WA G + +++
Sbjct: 815 VLDAWQATTRLWMELTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQE 874
Query: 874 LDDGDLARLLRRTIDLLAQI 893
L GD R R+ IDLL QI
Sbjct: 875 LSAGDFVRWSRQVIDLLDQI 894
>gi|311064364|ref|YP_003971089.1| helicase [Bifidobacterium bifidum PRL2010]
gi|310866683|gb|ADP36052.1| HelY Helicase [Bifidobacterium bifidum PRL2010]
Length = 852
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 198/392 (50%), Gaps = 89/392 (22%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDTKLVVS 217
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTSEVKPY 133
RRPVPL + T+ LL L D +G+ +N +L L+ L + +
Sbjct: 218 ERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAARRRGA 277
Query: 134 KDGGSR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 189
++ SR R +SR HA + P+ V+D L +L
Sbjct: 278 ENSRSRGRGHSRGHAPAQRH-----------------------TPKRWAVVDELNYL--- 311
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------------ 226
DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 312 DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDLKA 368
Query: 227 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA
Sbjct: 369 LQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLA 416
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPY 342
GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V P
Sbjct: 417 LGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFVPA 476
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
A K ++ PL S F A++ M +NLL
Sbjct: 477 TAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAM 774
+R+ R E S ++F RI +++ + + D + G+ I E ++ LA
Sbjct: 636 ERVQHRYESRTGSVARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAE 695
Query: 775 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 890 LAQI----PKLPDVDQRLQKNAVDASNVMDR 916
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|419421527|ref|ZP_13961755.1| putative helicase [Propionibacterium acnes PRP-38]
gi|422396796|ref|ZP_16476827.1| HelY [Propionibacterium acnes HL097PA1]
gi|327329991|gb|EGE71745.1| HelY [Propionibacterium acnes HL097PA1]
gi|379978018|gb|EIA11343.1| putative helicase [Propionibacterium acnes PRP-38]
Length = 917
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 193/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L + LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKVNFLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAGIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|335050744|ref|ZP_08543696.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|342212890|ref|ZP_08705615.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|422495407|ref|ZP_16571694.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313813294|gb|EFS51008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|333769017|gb|EGL46171.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|340768434|gb|EGR90959.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 917
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 193/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L + LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKVNFLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAGIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|451333252|ref|ZP_21903838.1| putative helicase [Amycolatopsis azurea DSM 43854]
gi|449424058|gb|EMD29360.1| putative helicase [Amycolatopsis azurea DSM 43854]
Length = 925
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 216/442 (48%), Gaps = 55/442 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S + ++ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 134 LYAGSSTIGELAYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKP 132
+ ++ G T ++ RPVPL + L+ L + +H +L +N L
Sbjct: 194 LVEVRGDTTVVVDEHRPVPLWQHMLVGNRLMDLFAGQEEHAPGSELRINPSLL------- 246
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
R+ ++ + + + + + R + P DT+ L + +L
Sbjct: 247 -----------RRTEEVGRGFAPAGMRGPRGRRGAPSRMPRFRPPSRTDTVERLDNAGLL 295
Query: 193 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA------- 244
PAI FIF+R GCDAAV Q + L+ E EVE K RI+ P
Sbjct: 296 PAIVFIFSRAGCDAAVGQCVRSGLRLNGPE--EVE---KVRRIVAERTKDLPEGDLGVLG 350
Query: 245 ----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
+ L +G+A HHAG LP +K +EELF +GLVKVVFATETLA GINMPART VL
Sbjct: 351 YWEWREALERGIAGHHAGLLPAFKETVEELFVQGLVKVVFATETLALGINMPARTVVLER 410
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K + LT E Q+ GRAGRRGID GH V+ P ++ L PL
Sbjct: 411 LVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGIDPKQVGGLASTRTYPLR 470
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
S F Y M +NL+A Q G E AR L+EQSF + ++
Sbjct: 471 SSFRPGYNMAVNLVA-----------------QVG--AEAARDLLEQSFAQFQADRSVVG 511
Query: 421 AKDELCKIQKETDVLTSEISDD 442
+ + ++ T+ I+ D
Sbjct: 512 TARRIERNKEALRGYTTAITGD 533
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV-----IFPLGETA 761
E+ +RL A +++L +++ S + F RI ++ E L ++ + G+
Sbjct: 702 ERYQRLSAETEQLERKVAATTHSLARAFDRILRLLGERGYLGPESKGDGEDRVTEHGKRL 761
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
+ E++L A +R+ + L PA+LAAV ++LV E + EP
Sbjct: 762 TRLYSESDLLAAECIRHDLWKGLSPAELAAVVSTLVFEA-------RRDTAGEPRLPAGK 814
Query: 822 VINVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----A 873
V++ ++EL E +H ++ D+ F+ V WA G + +++
Sbjct: 815 VVDAWQATTRLWMELTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQE 874
Query: 874 LDDGDLARLLRRTIDLLAQI 893
L GD R R+ IDLL QI
Sbjct: 875 LSAGDFVRWSRQVIDLLDQI 894
>gi|395768461|ref|ZP_10448976.1| helicase [Streptomyces acidiscabies 84-104]
Length = 934
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 168/497 (33%), Positives = 243/497 (48%), Gaps = 70/497 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 141 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +L+ E KP Y+D
Sbjct: 201 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGSKKAVNPDLARLARMEASKPSYQD--- 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R+R + AD + S + + P+VI+ L + +LPAI FI
Sbjct: 257 RKRGRMREADRER------------ERRSRSRVWTPGRPEVIE---RLDAEGLLPAITFI 301
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R C+AAVQ L D+ +EV ++ P RE ++GL
Sbjct: 302 FSRAACEAAVQQCLYAGLRLNDDESRAEVRALVEERTAAIP---REDLHVLGYFEWLEGL 358
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 359 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 418
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 419 HADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYN 478
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
M +NL+ Q GR +R+L+E SF + ++ ++ +
Sbjct: 479 MAVNLVE-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRN 519
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
++ D ++ D ++E A L+ ELK + TEL R+ +R +
Sbjct: 520 EEGLDGYKESMTCHLGD-----------FEEYARLRRELKDRE---TELARQGVAQRRAE 565
Query: 489 LKDILKDFENG---HLP 502
L+ + G H+P
Sbjct: 566 SAVSLERLKPGDVIHVP 582
Score = 45.8 bits (107), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 18/196 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G A +
Sbjct: 715 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGRRLARLY 771
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 772 GELDLLASECLRAGVWEGLSPAELAACVSALVYE---ARVGDDAMAPKVPSGAAKAALGE 828
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
+ + LD F + E G P D F+ V WASG E++ + + G
Sbjct: 829 TVRIWGRLDALEEEFKISQTEGVGQREP---DLGFAWAVFMWASGSGLDEVLREAEMPAG 885
Query: 878 DLARLLRRTIDLLAQI 893
D R ++ ID+L Q+
Sbjct: 886 DFVRWCKQVIDVLGQV 901
>gi|254392841|ref|ZP_05008011.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|197706498|gb|EDY52310.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 932
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 224/468 (47%), Gaps = 58/468 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 145 LYAGSSSLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 204
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T +I S RPVPL + + L +E+ H R EV P
Sbjct: 205 LDTVRGDTAVIVSEDRPVPLWQHVLAGRRMYDLFEEETDHGGRGTG-------RREVNPD 257
Query: 134 KDGGSRRRNSRKH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+R N R + D +V + + S I P+VI+ L + +
Sbjct: 258 LVRLARMENQRTYNPRDRRRGKMVREA-DRERERRSRGRIWTPGRPEVIE---RLDAEGL 313
Query: 192 LPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA---- 244
LPAI FIF+R GC+AAVQ L D+ + V E+ +R + + +
Sbjct: 314 LPAITFIFSRAGCEAAVQQCLYAGLRLNDDAARARVREIVEERTAAIPGEDLHVLGYYEW 373
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 374 LEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKW 433
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+T E Q+ GRAGRRGID GH V++ L PL S F
Sbjct: 434 NGEQHADITPGEYTQLTGRAGRRGIDIEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFK 493
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 424
SY M +NL+ Q GR +R+L+E SF + ++ +
Sbjct: 494 PSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQ 534
Query: 425 LCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
+ K ++ + +T + D ++E A L+ ELK
Sbjct: 535 VQKNEAGLEGYREGMTCHLGD---------------FEEYARLRRELK 567
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 28/241 (11%)
Query: 666 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H E +++QR+ ++ARL+ ++ R + D ++ E + RL+ +++L
Sbjct: 689 HIVPERHRKQRSAAADDREIARLRAEL-RAHPCHGCDEREDHARWAE-RHHRLQRDTRQL 746
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 778
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR+
Sbjct: 747 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEDGKRLARLYGELDLLASECLRD 803
Query: 779 KILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
++ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 804 RVWEGLSPAELAACVSALVYEARQADDAVPPKVPGGRVKAALGE----MVRIWGRLDALE 859
Query: 831 SSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
F + E G P D F+ V WA + E++ + + GD R ++ ID+
Sbjct: 860 EDFKINQTEGVGQREP---DLGFAWAVYQWAEDKSLDEVLREAEMPAGDFVRWTKQVIDV 916
Query: 890 L 890
L
Sbjct: 917 L 917
>gi|297198491|ref|ZP_06915888.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|297147112|gb|EDY60182.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 947
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 164/505 (32%), Positives = 242/505 (47%), Gaps = 85/505 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 150 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 209
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +L+ E + Y+D
Sbjct: 210 TQVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGNKKAVNPDLARLARMEAQRPSYQD--- 265
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + + P+VI+ L + +LPAI FI
Sbjct: 266 -RRRGRAMREADRER----------ERRQRSKVWTPSRPEVIE---RLDAEGLLPAITFI 311
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAI--------- 245
F+R C+AAVQ +C + + L A R R L + R +I
Sbjct: 312 FSRAACEAAVQ---------QCLYAGLRLNDDEARGRVRALVEE--RTASIPHEDLHVLG 360
Query: 246 -----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
+GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL
Sbjct: 361 YYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEK 420
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K +T E Q+ GRAGRRGID GH V++ E L PL
Sbjct: 421 LVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGSSPEHLAGLAGTRTYPLR 480
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
S F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 481 SSFKPSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVG 521
Query: 421 AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRR 480
++ + ++ D + ++ D ++E A L+ ELK + TEL R+
Sbjct: 522 ISRQVQRNEEGLDGYKASMTCHLGD-----------FEEYAQLRRELKDRE---TELARQ 567
Query: 481 MELKRFSALKDILKDFENG---HLP 502
+R + L+ + G H+P
Sbjct: 568 GVSQRRAEAAVALEKLKPGDVIHVP 592
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 22/223 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 725 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 782
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 818
E +L + LR + L PA+LAA ++LV E KV K +++ E
Sbjct: 783 ELDLLASECLREGVWEGLGPAELAACVSALVYESRVGDDAMAPKVPSGKAKAALGE---- 838
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 839 MVRIWGRLDALEEDFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 895
Query: 878 DLARLLRRTIDLLAQIPKLPDVD----QRLQKNAVDASNVMDR 916
D R ++ ID+L QI V + KNA A +++ R
Sbjct: 896 DFVRWCKQVIDVLGQISAAAPVSGGEGSTVAKNARKAVDLLLR 938
>gi|422537005|ref|ZP_16612893.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315080918|gb|EFT52894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
Length = 917
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E GW+ ++ G + S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGGWLDEVRGDVRGVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|294811682|ref|ZP_06770325.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326440134|ref|ZP_08214868.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|294324281|gb|EFG05924.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 942
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 224/468 (47%), Gaps = 58/468 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSSSLLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T +I S RPVPL + + L +E+ H R EV P
Sbjct: 194 LDTVRGDTAVIVSEDRPVPLWQHVLAGRRMYDLFEEETDHGGRGTG-------RREVNPD 246
Query: 134 KDGGSRRRNSRKH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+R N R + D +V + + S I P+VI+ L + +
Sbjct: 247 LVRLARMENQRTYNPRDRRRGKMVREA-DRERERRSRGRIWTPGRPEVIE---RLDAEGL 302
Query: 192 LPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA---- 244
LPAI FIF+R GC+AAVQ L D+ + V E+ +R + + +
Sbjct: 303 LPAITFIFSRAGCEAAVQQCLYAGLRLNDDAARARVREIVEERTAAIPGEDLHVLGYYEW 362
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 363 LEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKW 422
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+T E Q+ GRAGRRGID GH V++ L PL S F
Sbjct: 423 NGEQHADITPGEYTQLTGRAGRRGIDIEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFK 482
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 424
SY M +NL+ Q GR +R+L+E SF + ++ +
Sbjct: 483 PSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQ 523
Query: 425 LCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
+ K ++ + +T + D ++E A L+ ELK
Sbjct: 524 VQKNEAGLEGYREGMTCHLGD---------------FEEYARLRRELK 556
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 32/265 (12%)
Query: 666 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H E +++QR+ ++ARL+ ++ R + D ++ E + RL+ +++L
Sbjct: 678 HIVPERHRKQRSAAADDREIARLRAEL-RAHPCHGCDEREDHARWAE-RHHRLQRDTRQL 735
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 778
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR+
Sbjct: 736 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEDGKRLARLYGELDLLASECLRD 792
Query: 779 KILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
++ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 793 RVWEGLSPAELAACVSALVYEARQADDAVPPKVPGGRVKAALGE----MVRIWGRLDALE 848
Query: 831 SSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
F + E G P D F+ V WA + E++ + + GD R ++ ID+
Sbjct: 849 EDFKINQTEGVGQREP---DLGFAWAVYQWAEDKSLDEVLREAEMPAGDFVRWTKQVIDV 905
Query: 890 LAQIPKLPDVDQ----RLQKNAVDA 910
L QI + R + AVDA
Sbjct: 906 LGQIAAAAPAENITVARNARRAVDA 930
>gi|433635162|ref|YP_007268789.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070017]
gi|432166755|emb|CCK64258.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070017]
Length = 904
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 204/426 (47%), Gaps = 68/426 (15%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL + + L D
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFD------------- 210
Query: 122 YLQLSTSEVKPYKDGGSRRRNS----RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
Y D G + R + R A + + + + R P
Sbjct: 211 -----------YDDAGGQPRVNPDLLRHIAHRREADRMADWQPRRRGSGRPGFYRPPGRP 259
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEV------E 226
+VI L + +LPAI F+F+R GCDAAV L + ++EV +
Sbjct: 260 EVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSQLRLTSEEERARIAEVIDHRCGD 316
Query: 227 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 317 LADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLA 372
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPS 432
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
E L PL S F SY M +NL+ H ++A +L+E
Sbjct: 433 EVAGLASTRTFPLRSSFAPSYNMTINLV------HRMGP-------------QQAHRLLE 473
Query: 407 QSFGNY 412
QSF Y
Sbjct: 474 QSFAQY 479
>gi|357402751|ref|YP_004914676.1| helicase helY [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358824|ref|YP_006057070.1| DSH domain-containing protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769160|emb|CCB77873.1| putative helicase helY [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365809332|gb|AEW97548.1| DSH domain protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 947
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 155/448 (34%), Positives = 215/448 (47%), Gaps = 57/448 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 135 LYAGSQALSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 194
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G TE+I S RPVPL + + L +EK + + V+P
Sbjct: 195 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEKSAAPD------------AAVRPG 242
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ---------------VPQ 178
K D+N + + + Q+ L N + RR P
Sbjct: 243 K------------LDVNPDLLRLARTQNTLGYNPRDRRRRGYEADRERERRQRNRIWTPG 290
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRIL 235
+ + L + +LPAI FIF+R GC+AAVQ L DE +A +R +
Sbjct: 291 RPEVIERLDAEGLLPAITFIFSRAGCEAAVQQCLHAGLRLNDDEARAKVRAIAEERTAAI 350
Query: 236 YPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
+ + ++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINM
Sbjct: 351 ADEDLHVLGYFEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINM 410
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351
PAR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 411 PARSVVLEKLVKWNGETHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPVALA 468
Query: 352 LFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNE--SDDMKALQAGRSLEEARKLV-- 405
AG PL S F SY M +NL+ G H S E QA RS+ + V
Sbjct: 469 GLAGTRTYPLRSSFRPSYNMAVNLV-GQFGRHRSRELLETSFAQFQADRSVVGITRQVQR 527
Query: 406 -EQSFGNYV-GSNVMLAAKDELCKIQKE 431
E+ Y G L +E ++++E
Sbjct: 528 NEEGLAGYREGMTCHLGDFEEYGRLRRE 555
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ ++ L +RIE + + F RI ++ E LD +T + G A + G
Sbjct: 729 ERYWRLQRDTQALQRRIEGRTNTIARTFDRICGLLTELGYLDGDT--VTEHGRRLARLYG 786
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L + LR + L PA+LAA ++LV E ++ + P N + L
Sbjct: 787 ELDLLASECLREGVWNGLGPAELAACASALVYES------RSADDMLAPKLPGGNARHAL 840
Query: 827 --------------DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 872
DEHR ++ E G P D F+ WASG ++ D
Sbjct: 841 GEMVRIWGRLDALEDEHR---IKQSEGVGQREP---DLGFAWAAHRWASGHGLDAVLRDA 894
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
+ GD R ++ ID+L QI + D ++ NA A + + R
Sbjct: 895 DMPAGDFVRWTKQLIDVLGQIAEAAPQDSPVRANARKAVDKLLR 938
>gi|302550281|ref|ZP_07302623.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302467899|gb|EFL30992.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 946
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/406 (36%), Positives = 205/406 (50%), Gaps = 56/406 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 153 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 212
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D
Sbjct: 213 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGRKKAVNPDLTRMARMEASRPSYQD--- 268
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + I P+VI+ L + +LPAI FI
Sbjct: 269 -RRRGRSMREADRER----------ERRQRSRIWTPSRPEVIE---RLDAEGLLPAITFI 314
Query: 199 FNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPA-----------IK 246
F+R C+AAVQ L L++ E E +L R PA ++
Sbjct: 315 FSRAACEAAVQQCLYAGLRLNDEEAREQVRSLVEERT-----ASIPAEDLHVLGYYEWLE 369
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 370 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 429
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 430 EQHADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPS 489
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Y M +NL+ Q GR +R+L+E SF +
Sbjct: 490 YNMAVNLVE-----------------QFGR--HRSRELLETSFAQF 516
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 18/219 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 728 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 785
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 818
E +L + LR + L PA+LAA ++LV E K+ K +++ E
Sbjct: 786 ELDLLASECLREGVWEGLGPAELAACVSALVFESRVADDAMAPKLPSGKAKAALGE---- 841
Query: 819 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 842 MVRIWGRLDALEEEFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 898
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
D R ++ ID+L QI + KNA +++ R
Sbjct: 899 DFVRWCKQVIDVLGQIAAAAPQGSSVVKNARKGVDLLLR 937
>gi|50303465|ref|XP_451674.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640806|emb|CAH02067.1| KLLA0B03179p [Kluyveromyces lactis]
Length = 1001
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 19/364 (5%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D +RG VWEE+II P+ V+ I LSATV N E A W+G+ K
Sbjct: 424 DVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNI 483
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL K ++P++++K + + + + L+ S + G S+
Sbjct: 484 YVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTASSI-----GSSK-- 536
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-----LRSRDMLPAIW 196
NS K+ + N + G + N + T W+ LR+ D+LPA+
Sbjct: 537 NSPKNGKPSGNQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVV 596
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLL-KG 251
F+F+++ C+ +E +LL E S + E ++ R R + + I+ LL +G
Sbjct: 597 FVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRG 656
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HH G LPI K IE LF +G VK++FATET A G+N+P RT V S + K +
Sbjct: 657 IAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRY 716
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMV 370
L E QMAGRAGRRG D G V+++ E K + GV L SQF +Y M+
Sbjct: 717 LLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMI 776
Query: 371 LNLL 374
LNLL
Sbjct: 777 LNLL 780
>gi|383823432|ref|ZP_09978626.1| ATP-dependent DNA helicase HelY [Mycobacterium xenopi RIVM700367]
gi|383339007|gb|EID17360.1| ATP-dependent DNA helicase HelY [Mycobacterium xenopi RIVM700367]
Length = 920
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 164/491 (33%), Positives = 232/491 (47%), Gaps = 70/491 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I+ P EV+++ LSATV+NA+E GWI + G T ++
Sbjct: 129 VVMDEVHFLADRMRGPVWEEVILNLPDEVRLVSLSATVSNAEEFGGWIQTVRGDTTVVVD 188
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L D L++S S V+ + RR + +
Sbjct: 189 EHRPVPLWQHMLVGKRLFDLFDYDA-------DAGQLRVSPSLVRHI----AHRREATRL 237
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
AD + R P+V+ L +LPAI F+F+R GCDA
Sbjct: 238 ADWRPRRPAGRG-GPGRAGGRPGFYRPPSRPEVVAIL---DREGLLPAITFVFSRAGCDA 293
Query: 207 AV-QYLEDCNLL----DECEMSEV------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
AV Q L L D ++EV +LA + +L RE GL++G+AAH
Sbjct: 294 AVAQCLRSPLRLTTEEDRARIAEVIDHRCGDLADEDLAVLGYYEWRE----GLMRGLAAH 349
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 350 HAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHLPLTPG 409
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTASYGMV 370
E Q+ GRAGRRGID GH V++ P E E ++ AG+ PL S F SY M
Sbjct: 410 EYTQLTGRAGRRGIDVEGHAVVIWDPQEETAEPAEV--AGLASTRTFPLRSSFAPSYNMT 467
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
+NL+ + M E+A +L+E SF Y ++ + + ++
Sbjct: 468 INLV------------NRMGP-------EQAHRLLEHSFAQYQADRSVVGLVRGIERGRR 508
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
D + +E+ +A + A L+E + +R + R +R A
Sbjct: 509 LLDEIAAELGG-----------HDAPILDYARLRERISQRERAQARASR---AQRRQAAN 554
Query: 491 DILKDFENGHL 501
D L G +
Sbjct: 555 DALASLRRGDI 565
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 763
E+ R++ + L +++ S + F RI ++ E R L+ + QV G A
Sbjct: 697 ERYLRIERDNAALQQKVAAATNSLARTFDRIVGLLTERGFIRMLNGDPQVTED-GRLLAR 755
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
I E++L +A LR + L+PA+LAAV ++++ E R + T +
Sbjct: 756 IYSESDLLVAECLRTGVWTGLRPAELAAVLSAVLYES---RGSEGAGPPQRADTPTAPLR 812
Query: 824 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWAS--GLTWREMMMD---CALD 875
L R EL +++H + + D F + WAS LT + D +
Sbjct: 813 RALARTRQLSTELRADEQRHRISLSREPDEGFVPAIYRWASTGDLTAALLATDDSGTGIS 872
Query: 876 DGDLARLLRRTIDLLAQIPK 895
GD R R+ +DLL Q+ K
Sbjct: 873 AGDFVRWCRQVLDLLDQVRK 892
>gi|444314577|ref|XP_004177946.1| hypothetical protein TBLA_0A06360 [Tetrapisispora blattae CBS 6284]
gi|387510985|emb|CCH58427.1| hypothetical protein TBLA_0A06360 [Tetrapisispora blattae CBS 6284]
Length = 1297
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 204/385 (52%), Gaps = 39/385 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 446 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTFEFATWIGRTKQKNI 505
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL K L+P+++EK + + + + + L E P K+ G++
Sbjct: 506 YVISTPKRPVPLVINLWAKKELIPVINEKREFLIKNFNNHKALL---EDTPSKNNGTKND 562
Query: 142 NSRK------------------------HADMNSNNIVTSFGQH--QLSKNSINAIRRSQ 175
N +A+ + + G + Q K + +
Sbjct: 563 NKNSTRGGSRGGSRSGSRGGSRGGSSRGNANRGGSRGAGAIGSNRSQFYKRGGSMPTKKT 622
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKR 231
P++I+ +L+S D+LPA+ F+F+++ C+ +LE N E S+ +E ++ R
Sbjct: 623 WPELIN---YLKSHDLLPAVIFVFSKKRCEDYADWLEGINFCTNKEKSQIHMFIEKSITR 679
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
R + + I+ LL +G+A HH G LPI K IE LF +GL++V+FATET A G+N
Sbjct: 680 LRKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEILFAKGLIRVLFATETFAMGLN 739
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
+P RT V S + K + + LT E QMAGRAGRRG D+ G V+++ E K
Sbjct: 740 LPTRTVVFSEIKKHDGNSQRYLTPGEFTQMAGRAGRRGKDSTGTVIVMTYTEPFKEGNFK 799
Query: 351 LLFAGVEP-LVSQFTASYGMVLNLL 374
+ G+ L SQF +Y M+LNLL
Sbjct: 800 EVTLGIPTKLESQFRLTYNMILNLL 824
>gi|408533158|emb|CCK31332.1| putative helicase helY [Streptomyces davawensis JCM 4913]
Length = 951
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 242/501 (48%), Gaps = 77/501 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LIGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +L+ E + Y+D
Sbjct: 216 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGSKKAVNPDLTRLARMEAQRPSYQD--- 271
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + + P+VI+ L + +LPAI FI
Sbjct: 272 -RRRGRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFI 317
Query: 199 FNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRI-------LYPDAVREPAIKGLLK 250
F+R C+AAVQ L L++ E AL R L+ E ++GL +
Sbjct: 318 FSRAACEAAVQQCLYAGLRLNDEEARHKVRALVEERTASIPTEDLHVLGYYE-WLEGLER 376
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 377 GIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHA 436
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
+T E Q+ GRAGRRGID GH V++ E L PL S F SY M
Sbjct: 437 DITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYNMA 496
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDE 424
+NL+ Q GR +R+L+E SF + VG + + +E
Sbjct: 497 VNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEE 537
Query: 425 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK 484
+ KE+ +T + D + E A L+ ELK + TEL R+ +
Sbjct: 538 GLEGYKES--MTCHLGD---------------FDEYARLRRELKDRE---TELARQGAAQ 577
Query: 485 RFSALKDILKDFENG---HLP 502
R + L+ + G H+P
Sbjct: 578 RRAEAAVALEKLKPGDVIHVP 598
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 16/195 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R+ + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLAPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGEM 845
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEDFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGD 902
Query: 879 LARLLRRTIDLLAQI 893
R ++ ID+L QI
Sbjct: 903 FVRWCKQVIDVLGQI 917
>gi|284032976|ref|YP_003382907.1| DSH domain-containing protein [Kribbella flavida DSM 17836]
gi|283812269|gb|ADB34108.1| DSH domain protein [Kribbella flavida DSM 17836]
Length = 957
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 162/510 (31%), Positives = 236/510 (46%), Gaps = 57/510 (11%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + + L + +V+DEVHYL+D +RG VWEE+II+ P V ++ LS
Sbjct: 117 IVVMTTEVLRNMLYAGSHTLLGLSYVVMDEVHYLADRARGAVWEEVIIHLPDSVAVVSLS 176
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ +RPVPL + L L +
Sbjct: 177 ATVSNAEEFGDWLETVRGNTVVVLEEKRPVPLFQHVMVGKRLHDLFAGEAPTARAGAPAL 236
Query: 122 YLQLS--TSEVKPYKDGGSRRRNSRKHADMNSNNIVT------SFGQHQLSKNSINAIRR 173
Y S + P K G + A + ++V + +++ ++ RR
Sbjct: 237 YGNPSGKSKSGNPAKSGNPAKSGPPASAAPDLRDLVNPQLVRIAREDNRIFRDDSRKPRR 296
Query: 174 SQ------------VPQVIDTLWHLRSRDMLPAIWFIFNRRGC-DAAVQYLED-CNLLDE 219
+ P D + L + +LPAI+FIF+R+GC DA +Q L L
Sbjct: 297 RRDLPKNRPSKSHFTPYRSDVVEELDAGALLPAIYFIFSRKGCEDAMLQCLRSGLRLTKP 356
Query: 220 CEMSEVELALKRFRILYPDA-----VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 274
E E++ L PD + L +G+AAHHAG L +K +EELF RG
Sbjct: 357 SERDEIKRVLAERTADLPDEDLGVLGYHDFAEALSRGIAAHHAGMLAAFKEVVEELFARG 416
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
L+KVVFATETLA GINMPART VL LSK + +T E Q+ GRAGRRGID GH
Sbjct: 417 LIKVVFATETLALGINMPARTVVLEKLSKWNGEAHVDITPGEYTQLTGRAGRRGIDVEGH 476
Query: 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 394
V++ P L PL S F+ SY M +NL+ Q
Sbjct: 477 AVVLWQPGFDPRAVAGLASTRTYPLRSSFSPSYNMAVNLVR-----------------QV 519
Query: 395 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 454
GR AR ++E SF + ++ + +Q+ T+ L E ++ID LS
Sbjct: 520 GRG--RARDMLELSFAQFQSDQAVVGLARQ---VQRNTEAL--EGYKESIDCHLGDFLSY 572
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELK 484
A + +E +++R +L RR E +
Sbjct: 573 ADLRRRIGERESSGSKRR---KLDRRAEAQ 599
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL ++ + ++IEQ + ++F R+ V+ LD + G+ A I
Sbjct: 742 ERYFRLDRETREVQRKIEQRTNTIARQFDRVCQVLDALHYLDGDKTT--EAGDRLARIYT 799
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L A LR + DL QLAA A+LV E R +S P V + + +
Sbjct: 800 ELDLVAAECLRQGVFDDLDVPQLAACLAALVYES---RSKDEPTSPRLPQGDVRHALERM 856
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
L+ V+ +D F WASG + E++ + L GD R +++
Sbjct: 857 GSIWRDLSALERNMRVDFLRSMDLGFCWAAFRWASGASLSEVLYESDLAAGDFVRWVKQL 916
Query: 887 IDLLAQIPKLPD----------VDQRLQKNAVDASNVMDRP 917
IDL Q+ V + +++ + ++V+D P
Sbjct: 917 IDLTEQVADAAGPTPLRATARAVTEEIRRGVISYASVVDEP 957
>gi|429200671|ref|ZP_19192347.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428663653|gb|EKX63000.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 949
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 239/502 (47%), Gaps = 79/502 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LIGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
TE+I S RPVPL + + L +E H K ++N + ++ + R
Sbjct: 216 TEVIVSEHRPVPLFQHVLAGRRMYDLFEEGEGH---KKAVNPDLTRMARMEASRPSFQDR 272
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R + + + + I P+VI+ L S +LPAI FIF+
Sbjct: 273 RRGRAMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFIFS 319
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLL 249
R C+AAVQ C L +++ E LK ++ PA ++GL
Sbjct: 320 RAACEAAVQ---QC-LYAGLRLNDDEARLKVRALVEERTATIPAEDLHVLGYYEWLEGLE 375
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 376 RGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQH 435
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
+T E Q+ GRAGRRGID GH V++ + L PL S F SY M
Sbjct: 436 ADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYNM 495
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKD 423
+NL+ Q GR +R+L+E SF + VG + + +
Sbjct: 496 AVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNE 536
Query: 424 ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMEL 483
E + KE+ +T + D ++E A L+ ELK + TEL ++
Sbjct: 537 EGLEGYKES--MTCHLGD---------------FEEYARLRRELKDRE---TELAKQGAA 576
Query: 484 KRFSALKDILKDFENG---HLP 502
+R + L+ + G H+P
Sbjct: 577 QRRAEAAVALEKLKPGDVIHVP 598
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RLK + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLKRDTAQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRAGVWEGLDPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGE 844
Query: 819 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDGLEEEFRITQSEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
D R ++ ID+L Q+ + K+A A + + R
Sbjct: 902 DFVRWCKQVIDVLGQVSAAAPSGSTVAKSARKAVDGLLR 940
>gi|418463453|ref|ZP_13034462.1| superfamily II RNA helicase [Saccharomonospora azurea SZMC 14600]
gi|359733208|gb|EHK82209.1| superfamily II RNA helicase [Saccharomonospora azurea SZMC 14600]
Length = 918
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 210/425 (49%), Gaps = 61/425 (14%)
Query: 4 RIVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V M+ +ES L D+ +V+DEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 122 QIVVMTTEVLRNMLYAESSALDDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGL 181
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ ++ G T ++ RPVPL + L L +
Sbjct: 182 SATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMLVGGRLFDLF------AGEAVDS 235
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+L+ ++ +D +R HA R P+++
Sbjct: 236 GEAKLNPHLLRRVED------TARMHAPAAFRGRGRR-----GGPFRGPRYRPPARPEIV 284
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA 239
+ L S +LPAI FIF+R GCDAAV Q + L+ E EVE + RI+
Sbjct: 285 E---RLDSAGLLPAIVFIFSRAGCDAAVTQCVRSGLRLNTPE--EVE---QVRRIVDERT 336
Query: 240 VREP----AIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
P A+ G L +GVAAHHAG LP +K +EELF RGLVKVVFATETLA G
Sbjct: 337 ADLPQNDLAVLGYWEWREALEQGVAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALG 396
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + LT E Q+ GRAGRRGID GH V+V P +
Sbjct: 397 INMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQV 456
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQ 407
L PL S F Y M +NL+ GR ++AR+L+EQ
Sbjct: 457 AGLASTRTYPLRSSFRPGYNMAVNLV--------------------GRFGSDKARELLEQ 496
Query: 408 SFGNY 412
SF +
Sbjct: 497 SFAQF 501
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL+A +++L +++ S + F RI ++ E LD + + G+ A +
Sbjct: 700 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDADGDAVTEHGQLLARLYS 759
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHRLAPAELAAVVSTLVYEARR----DSAAEAKLPSGPVSEAWQET 815
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ ++ + +H ++ D+ F+ V WA G +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGEALEKVLTAAEVNGQELSAGDFVR 875
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|381161954|ref|ZP_09871184.1| superfamily II RNA helicase [Saccharomonospora azurea NA-128]
gi|379253859|gb|EHY87785.1| superfamily II RNA helicase [Saccharomonospora azurea NA-128]
Length = 918
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 206/424 (48%), Gaps = 59/424 (13%)
Query: 4 RIVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V M+ +ES L D+ +V+DEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 122 QIVVMTTEVLRNMLYAESSALDDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGL 181
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ ++ G T ++ RPVPL + L L +
Sbjct: 182 SATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMLVGGRLFDLF------AGEAVDS 235
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+L+ ++ +D +R HA R P+++
Sbjct: 236 GEAKLNPHLLRRVED------TARMHAPAAFRGRGRR-----GGPFRGPRYRPPARPEIV 284
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
+ L S +LPAI FIF+R GCDAAV L ++ E + RI+
Sbjct: 285 E---RLDSAGLLPAIVFIFSRAGCDAAVTQCVRSGL----RLNTPEEVEQVRRIVDERTA 337
Query: 241 REP----AIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
P A+ G L +GVAAHHAG LP +K +EELF RGLVKVVFATETLA GI
Sbjct: 338 DLPQNDLAVLGYWEWREALEQGVAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGI 397
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K + LT E Q+ GRAGRRGID GH V+V P +
Sbjct: 398 NMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVA 457
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQS 408
L PL S F Y M +NL+ GR ++AR+L+EQS
Sbjct: 458 GLASTRTYPLRSSFRPGYNMAVNLV--------------------GRFGSDKARELLEQS 497
Query: 409 FGNY 412
F +
Sbjct: 498 FAQF 501
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL+A +++L +++ S + F RI ++ E LD + + G+ A +
Sbjct: 700 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDSDGDAVTEHGQLLARLYS 759
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHRLAPAELAAVVSTLVYEARR----DSAAEAKLPSGPVSEAWQET 815
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ ++ + +H ++ D+ F+ V WA G +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGEALEKVLTAAEVNGQELSAGDFVR 875
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|418050320|ref|ZP_12688406.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353187944|gb|EHB53465.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 920
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 223/478 (46%), Gaps = 59/478 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E GWI + G T ++
Sbjct: 130 VVMDEVHFLADRMRGAVWEEVILHLPEDVRLVGLSATVSNAEEFGGWIQTVRGDTTVVVD 189
Query: 87 SRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
RPVPL + L L D E +H+ + ++ + RR +
Sbjct: 190 EHRPVPLWQHVLVGKRLFDLFDYDREGKQHLVDPDLIRHI--------------AHRREA 235
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ D R P VI +L +LPAI FIF+R G
Sbjct: 236 ERLTDWEPRRRGPG-----RPGGRSGLYRPPSRPDVIASL---DREGLLPAITFIFSRAG 287
Query: 204 CDAAVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGV 252
CDAAV+ L D+ E + +LA +L RE GLL+G+
Sbjct: 288 CDAAVKQCLRSPLKLTDDEERKRIAEVIDRRCGDLADSDLVVLDYYEWRE----GLLRGL 343
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K + L
Sbjct: 344 AAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLEKLVKFNGEQHMPL 403
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
T E Q+ GRAGRRGID GH V++ P E L PL S F SY M +N
Sbjct: 404 TPGEYTQLTGRAGRRGIDVEGHAVVLWHPDVEPAEVAGLASTRTFPLKSSFAPSYNMTIN 463
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
L+ Q G E+A L+E+SF Y ++ + + +K
Sbjct: 464 LVN-----------------QMG--PEQAHALLERSFAQYQADRSVVGLVRGVERGEKML 504
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 490
+ +E+ D R + A + E +A+ R RR+ + SAL+
Sbjct: 505 GEIAAELGWDRRANPDREPPILDYVRLRAKISERERAQSRASRLQRRQATAEALSALR 562
>gi|440701337|ref|ZP_20883532.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
gi|440276000|gb|ELP64332.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
Length = 908
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 203/399 (50%), Gaps = 42/399 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 111 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 170
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T++I S RPVPL + + L +E G+ + ++ + +L+ E + +R
Sbjct: 171 TQVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGSRKAVNPDLTRLARMEAQRPSFQDRKR 229
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+ + AD + S + + P+VI+ L S +LPAI FIF+
Sbjct: 230 GRAMREADRER------------ERRSRSRVWTPGRPEVIE---RLDSEGLLPAITFIFS 274
Query: 201 RRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRIL-YPDAVREPA-----IKGLLKGVA 253
R C+AAVQ L L++ E E AL R PD ++GL +G+A
Sbjct: 275 RAACEAAVQQCLYAGLRLNDDEARERVRALVEERTASIPDEDLHVLGYYEWLEGLERGIA 334
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 335 AHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADIT 394
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V++ + L PL S F SY M +NL
Sbjct: 395 PGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPDHLAGLAGTRTYPLRSSFKPSYNMAVNL 454
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ Q GR +R+L+E SF +
Sbjct: 455 VD-----------------QFGR--HRSRELLETSFAQF 474
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 28/244 (11%)
Query: 666 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H E ++QR + +ARL+ I R D ++ E + RL + +L
Sbjct: 641 HIPPERARKQRAQAADDREIARLRTAI-RAHACHGCNDREDHARWAE-RYHRLLRDTSQL 698
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 778
+RIE + + F RI ++ E LD + + + G+ A + GE +L + LR
Sbjct: 699 ERRIEGRTNTIARTFDRIVALLTE---LDYLRSDEVTEHGKRLARLYGELDLLASECLRA 755
Query: 779 KILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
+ L PA+LAA ++LV E KV K +++ E ++ + LD
Sbjct: 756 GVWEGLSPAELAACVSALVYESRVADDAMAPKVPSGKAKAALGE----MVRIWGRLDALE 811
Query: 831 SSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
F Q E G P D F+ WASG E++ + + GD R ++ ID+
Sbjct: 812 EEFRITQSEGVGQREP---DLGFAWAAYEWASGKGLDEVLREAEMPAGDFVRWCKQVIDV 868
Query: 890 LAQI 893
L QI
Sbjct: 869 LGQI 872
>gi|336320860|ref|YP_004600828.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336104441|gb|AEI12260.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 964
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/417 (35%), Positives = 206/417 (49%), Gaps = 56/417 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + + L + +V+DEVHYL+D RG VWEE+II+ P +VQ++ LSATV+NA+E W
Sbjct: 161 LYAGSATLAGLGFVVMDEVHYLADRFRGPVWEEVIIHLPDDVQLVSLSATVSNAEEFGDW 220
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ S RPVPL + LL L ++ + V P
Sbjct: 221 LATVRGDTTVVVSEHRPVPLGQHVLVNGDLL------------DLYAGHVDPTDPGVDPP 268
Query: 134 KDGGSRRRNSRKHAD-------MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 186
+ RR +R+ D +R + V+D L
Sbjct: 269 INPDLRRLLARRGEDERRGPGDRGYRGGGGRRPGAGARGAPGGGVRTTPRFAVVDLL--- 325
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALK-RFRILYPDAVREP 243
+LPAI FIF+R GC+AAVQ L E +E+ + ++ R + P+ +
Sbjct: 326 DREGLLPAIVFIFSRAGCEAAVQQCLAAGVRLTSPAEQAEIRMIVEERCAAVPPEDLDVL 385
Query: 244 A----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
L +GVA+HHAG LP++K +E+LF RGLVKVVFATETLA GINMPAR+ VL
Sbjct: 386 GYWELADALTRGVASHHAGMLPLFKETVEDLFSRGLVKVVFATETLALGINMPARSVVLE 445
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K S + +T E Q+ GRAGRRGID GH V++ P + A K L+
Sbjct: 446 KLVKWDGSRHVDVTPGEYTQLTGRAGRRGIDVEGHAVVLAHQGLDPVQLAGLASKRLY-- 503
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F +Y M +NL+A Q GR E AR+++E SF +
Sbjct: 504 --PLRSSFRPTYNMAVNLVA-----------------QVGR--ERAREVLETSFAQF 539
>gi|386387443|ref|ZP_10072459.1| DSH domain-containing protein [Streptomyces tsukubaensis NRRL18488]
gi|385665093|gb|EIF88820.1| DSH domain-containing protein [Streptomyces tsukubaensis NRRL18488]
Length = 945
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 226/472 (47%), Gaps = 66/472 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W
Sbjct: 137 LYAGSQSLRGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPDSVTLVSLSATVSNAEEFGDW 196
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G T +I S RPVPL + + L +E+ H R +++ + ++L+ +
Sbjct: 197 LDTVRGDTAVIVSEERPVPLWQHVMAGRRMYDLFEEESDHGGRGTGRREVNPDLVRLART 256
Query: 129 E-VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 187
E + Y RR + AD + S + I P+VI+ L
Sbjct: 257 ENQRSYNPRDRRRGKMVREADRER------------ERRSRSRIWTPGRPEVIE---RLD 301
Query: 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA 244
+ +LPAI FIF+R GC+AAVQ L D + E+ +R + + +
Sbjct: 302 AEGLLPAITFIFSRAGCEAAVQQCLYAGLRLNDDTARLRVREIVEERTSAIPTEDLNVLG 361
Query: 245 ----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL
Sbjct: 362 YYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEK 421
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K +T E Q+ GRAGRRGID GH V++ L PL
Sbjct: 422 LVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLR 481
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
S F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 482 SSFRPSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADRSVVG 522
Query: 421 AKDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
++ K ++ + +T + D ++E A L+ ELK
Sbjct: 523 ISRQVQKNETGLEGYREGMTCHLGD---------------FEEYARLRRELK 559
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL +++L +RIE + + F RI ++ E L + + P G A + G
Sbjct: 726 ERYHRLLRDTRQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTPHGRRLARLYG 783
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------- 818
E +L + LR+ + L PA+LAA ++LV E + + P
Sbjct: 784 ELDLLASECLRDGVWEGLTPAELAACVSALVYES------RQSDDAVAPKVPGGAAKTAL 837
Query: 819 --VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 875
++ + LD F + E G P D F+ WAS + E++ + +
Sbjct: 838 GQMVRIWGKLDALEEDFKINQAEGVGQREP---DLGFAWAAYQWASDKSLDEVLRETEMP 894
Query: 876 DGDLARLLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 910
GD R ++ ID+L QI P+ + + AVDA
Sbjct: 895 AGDFVRWTKQVIDVLGQIAAAAPREGSTVAKNARKAVDA 933
>gi|19075595|ref|NP_588095.1| Ski complex RNA helicase Ski2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676014|sp|O59801.1|SKI2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase C550.03c
gi|3136048|emb|CAA19107.1| Ski complex RNA helicase Ski2 (predicted) [Schizosaccharomyces
pombe]
Length = 1213
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 224/447 (50%), Gaps = 38/447 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNI 445
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR-R 140
+I++ +RPVPL Y K + ++D+ G R L Y + + KP K ++
Sbjct: 446 YVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVIAKDN 501
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+NS + V + + S ++ R + + HL +++LP I F+F+
Sbjct: 502 KNSARGRGAARGRGVQT--NMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFS 559
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELA-------LKRFRILYPDAVREPAIKGLLKGVA 253
++ C+ V L + +L + E SEV + LK+ L P R + L +G+A
Sbjct: 560 KKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREM--LSRGLA 617
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K L
Sbjct: 618 VHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLL 677
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E Q +GRAGRRG+D G V+++ ++ ++ L+SQF +Y M+LN
Sbjct: 678 PGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILN 737
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
LL +V L E ++++SF V ++ ++++ +++
Sbjct: 738 LL---RVETLRIED-----------------MIKRSFSENVNQTLVPQHEEKIKSFEEKL 777
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKE 459
L E+SD + LLS ++KE
Sbjct: 778 SALKKEMSDVDLKEIKSCLLSSESFKE 804
>gi|291440653|ref|ZP_06580043.1| helicase [Streptomyces ghanaensis ATCC 14672]
gi|291343548|gb|EFE70504.1| helicase [Streptomyces ghanaensis ATCC 14672]
Length = 937
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 165/503 (32%), Positives = 242/503 (48%), Gaps = 80/503 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 141 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +++ E P+ G
Sbjct: 201 TEVIVSEHRPVPLFQHVLAGRRIYDLFEE-GEGRKKAVNPDLTRMARLEASRPPW---GD 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RRR N + + ++ + R P+VI+ L + +LPAI FI
Sbjct: 257 RRRG-------RGNMREADRERERRQRSRVWTPSR---PEVIE---RLDAEGLLPAITFI 303
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVRE-PA--------- 244
F+R C+AAVQ +C + + L A R R L + PA
Sbjct: 304 FSRAACEAAVQ---------QCLYAGLRLNDEEARARVRALVEERTASIPAEDLHVLGYY 354
Query: 245 --IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 355 EWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLV 414
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
K +T E Q+ GRAGRRGID GH V++ E L PL S
Sbjct: 415 KWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSS 474
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 475 FKPSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGIS 515
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
++ + ++ + + ++ D + E A L+ ELK + TEL R+
Sbjct: 516 RQVQRNEEGLEGYKASMTCHLGD-----------FDEYARLRRELKDRE---TELARQGA 561
Query: 483 LKRFSALKDILKDFENG---HLP 502
+R + L+ + G H+P
Sbjct: 562 AQRRAESAVALERLKPGDVIHVP 584
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 24/242 (9%)
Query: 666 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H A E ++++R++ +ARL+K I R D ++ E + RL + +L
Sbjct: 672 HIAPERHRKKRSQAADDREIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSQL 729
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L + + G+ A + GE +L + LR
Sbjct: 730 ERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLREG 787
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------TVINVINVLDEHRSS 832
+ L PA+LAA ++LV E R+ + + PS ++ + LD
Sbjct: 788 VWEGLAPAELAACVSALVYE---ARVSDDAMAPKLPSGRAKAALGEMVRIWGRLDALEED 844
Query: 833 FLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
F Q E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 845 FRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLG 901
Query: 892 QI 893
QI
Sbjct: 902 QI 903
>gi|283456049|ref|YP_003360613.1| helicase [Bifidobacterium dentium Bd1]
gi|283102683|gb|ADB09789.1| Helicase [Bifidobacterium dentium Bd1]
Length = 868
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 238/487 (48%), Gaps = 83/487 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T+LI S
Sbjct: 165 VILDEVHYLADRFRGPVWEEVIIHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVS 224
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGG 137
+RPVPL + T+ L+ L + H ++ + LN +L + + + G
Sbjct: 225 EKRPVPLEQHVLVQADDRTEPELIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQG 283
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPA 194
++R RK + + S + + R P+ V+D L L DMLP
Sbjct: 284 AQRPERRKGKGKGPWH----------DRESSHKVER-HTPKRWAVVDELNFL---DMLPG 329
Query: 195 IWFIFNRRGCDAAVQYLEDCNL--------------LDECEMSEVELALKRFRILYPDAV 240
I+FIF+R GCD AV+ + L +DE M + +L+ + + L+
Sbjct: 330 IYFIFSRNGCDQAVEQCINAGLELTSNGEVRRIRRIVDE--MIDGQLSQEDLKALHFSQF 387
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
R L +G A HHAG + +++ +E LF+ GLVKVVFATETLA GINMPAR V+
Sbjct: 388 R----FALEEGFAPHHAGMIALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEK 443
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 356
L K +G + LT E Q+ GRAGRRGID GH V+V P A K ++
Sbjct: 444 LEKYDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY--- 500
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
PL S F ++ M +NLL N SD E AR ++ SF + +
Sbjct: 501 -PLHSSFRPTFNMAVNLL---------NSSD----------YETARITLDHSFAQWEANE 540
Query: 417 V---MLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ A D L K ++ T E D A + R LSE E L+ E+
Sbjct: 541 SAWQLEAQMDTLKKALEGYEHAFTCEFGDFADFMRLRMRLSELEKNERRRLKHEV----- 595
Query: 473 FRTELRR 479
FRT+ R
Sbjct: 596 FRTQSER 602
>gi|302561563|ref|ZP_07313905.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
gi|302479181|gb|EFL42274.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
Length = 946
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/501 (32%), Positives = 237/501 (47%), Gaps = 76/501 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G
Sbjct: 150 LLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGD 209
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
T++I S RPVPL + + L +E RK ++N + ++ + R
Sbjct: 210 TQVIVSEHRPVPLFQHVLAGRRIYDLFEEG---EGRKKAVNPDLTRMARLEAARPSWGDR 266
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R R NN+ + + + + + P+VI+ L + +LPAI FIF+
Sbjct: 267 RRGR-------NNMREA--DRERERRQRSRVWTPSRPEVIE---RLDAEGLLPAITFIFS 314
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA----------- 244
R C+AAVQ +C + + L + R V E PA
Sbjct: 315 RAACEAAVQ---------QCLFAGLRLNDEEAREQVRSLVEERTASIPAEDLHVLGYYEW 365
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 366 LEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKW 425
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+T E Q+ GRAGRRGID GH V++ + L PL S F
Sbjct: 426 NGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMNPDHLAGLAGTRTYPLRSSFK 485
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 424
SY M +NL+ Q GR +R+L+E SF + ++ +
Sbjct: 486 PSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQ 526
Query: 425 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK 484
+ + ++ D + ++ D ++E A L+ ELK + TEL R+
Sbjct: 527 VQRNEEGLDGYKASMTCHLGD-----------FEEYARLRRELKDRE---TELARQGAAH 572
Query: 485 RFSALKDILKDFENG---HLP 502
R + L+ + G H+P
Sbjct: 573 RRAEAAVALEKLKPGDVIHVP 593
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 20/267 (7%)
Query: 660 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H++ E H + ++ARL+K++ R + D ++ E + RL + +L
Sbjct: 681 HITPERHHKKRSQAADDREIARLRKEL-RAHPCHGCQDREDHARWAE-RYHRLLRDTSQL 738
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L + + G+ A + GE +L + LR
Sbjct: 739 ERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLREG 796
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------TVINVINVLDEHRSS 832
+ L PA+LAA ++LV E R + + PS ++ + LD
Sbjct: 797 VWEGLAPAELAACVSALVYE---ARAADDAMAPKLPSGRAKAALGEMVRIWGRLDALEED 853
Query: 833 F-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 854 FRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLG 910
Query: 892 QI-PKLPDVD-QRLQKNAVDASNVMDR 916
QI P D + KNA A + + R
Sbjct: 911 QIAAAAPSADGSTVPKNARKAVDGLLR 937
>gi|359766906|ref|ZP_09270702.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
gi|359315786|dbj|GAB23535.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
Length = 950
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 206/399 (51%), Gaps = 47/399 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T +I
Sbjct: 144 VVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGEWIQTVRGDTTVIVD 203
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPLT + + L L D +G + + +N E+K + +H
Sbjct: 204 DHRPVPLTQHMLVGSRLFDLFDSRGAAGDHRPKVN------PELKRFI----------RH 247
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ ++ + + R QV + L +LPAI FIF+R GCD
Sbjct: 248 RMLLDDDDDQRGRRGRGRPRRKPGPPRPQV------VARLEKEGLLPAIGFIFSRAGCDG 301
Query: 207 AV-QYLED-CNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
A+ Q L NLL +++ V EL+ +L D R GL +G AAH
Sbjct: 302 ALAQCLRSGLNLLTPDQVAAVDDVVDRHLTELSPADADVLGVDEWR----AGLRRGFAAH 357
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K + L+
Sbjct: 358 HAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKFNGEAHVDLSPG 417
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-- 373
E Q+ GRAGRRGID GH V+V +P E+ L A PL S F Y M +NL
Sbjct: 418 EFTQLTGRAGRRGIDVEGHAVIVWSPELIPEQVAGLAGARTFPLRSSFAPEYNMAVNLIG 477
Query: 374 ---LAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQS 408
LAG++ L N S QA RS + +ARK+ E S
Sbjct: 478 RLGLAGSR--DLLNRS--FAQFQADRSVVGQARKVDEMS 512
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813
+ P GE + I E++L + +R I L P LAAV A++V E + ++
Sbjct: 777 VTPTGEVLSRIYSESDLVVTECIRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSG 836
Query: 814 EPS--TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
P+ T + + + + S ++ +H V D+ FS V W SG + E +
Sbjct: 837 NPALRTAIADTVGIW----RSVTAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAA 892
Query: 872 CA-----LDDGDLARLLRRTIDLLAQI 893
L GD R R+ +DLL QI
Sbjct: 893 AGERGHLLSPGDFVRWNRQVVDLLEQI 919
>gi|260578709|ref|ZP_05846617.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
gi|258603206|gb|EEW16475.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
Length = 890
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 218/442 (49%), Gaps = 79/442 (17%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S + + +V+DEVH+L+D SRG VWEE I+ V ++ LS
Sbjct: 105 IVVMTTEVLRNMIYADSERLETLTHVVMDEVHFLADRSRGPVWEEAILNLDPRVILVSLS 164
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N +E GW+ + G TE+I + +RPVPLT + +LPL + +H+ ++N
Sbjct: 165 ATVSNVEEFGGWLSAVRGDTEIIVTEKRPVPLTQFMMVGRQILPLFEGSEQHLG---AIN 221
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ + ++ G RR P+ D
Sbjct: 222 --RKVVAAAAKAEETGKRRG-----------------------------------PKRGD 244
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241
+ H+ + MLPAI+FIF+R GCDAAV+ L + +D SE E L+ D
Sbjct: 245 VVQHMATAGMLPAIYFIFSRVGCDAAVRALL-IDRVDYSSPSEREEILRTIDAGVADLTE 303
Query: 242 EPA--------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
E + L +G AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPA
Sbjct: 304 EDLNVLGFRQWRRALSRGFAAHHAGMLPAFRHIVEDLFARGLLKVCFATETLALGINMPA 363
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT----PYEGAEECC 349
R+ VL L K LT + Q+ GRAGRRGID +G+ V++ + PY A+
Sbjct: 364 RSVVLEKLVKFNGETHADLTPGQYTQLTGRAGRRGIDTKGNAVVLWSQGMDPYGVADLAS 423
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
+ PL S F Y M +NL+ L+EA +L+ +SF
Sbjct: 424 TRTY----PLDSTFRPGYNMAVNLIGTM-------------------GLDEAHRLLLRSF 460
Query: 410 GNYVGSNVMLAAKDELCKIQKE 431
Y + ++ + +++ K ++E
Sbjct: 461 AQYQTNGAVVESAEQIEKRRRE 482
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 733 EFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
+F RI ++ E +++ N+ I GE + I E++L +A LR I +L PA+LA
Sbjct: 697 QFNRILALLAELDYVELVGNSARITMEGERLSKIHHESDLLVAQCLRRGIWDELDPAELA 756
Query: 791 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
AV ++ V E + K++ EP I+ + + S+ +++H + + +
Sbjct: 757 AVASTCVFENRRDSGAKDDGVPTEPLAEAISQTWRIYQELSTD---EQRHRLTVTREPEL 813
Query: 851 QFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLLAQI 893
F+ V W +G + L GD R RR IDLL QI
Sbjct: 814 GFATAVHQWTAGAPLEYCLRAAEASGATLTPGDFVRWCRRVIDLLDQI 861
>gi|68536017|ref|YP_250722.1| helicase [Corynebacterium jeikeium K411]
gi|68263616|emb|CAI37104.1| putative helicase [Corynebacterium jeikeium K411]
Length = 890
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 218/442 (49%), Gaps = 79/442 (17%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S + + +V+DEVH+L+D SRG VWEE I+ V ++ LS
Sbjct: 105 IVVMTTEVLRNMIYADSERLETLTHVVMDEVHFLADRSRGPVWEEAILNLDPRVILVSLS 164
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+N +E GW+ + G TE+I + +RPVPLT + +LPL + +H+ ++N
Sbjct: 165 ATVSNVEEFGGWLSAVRGDTEIIVTEKRPVPLTQFMMVGRQILPLFEGSEQHLG---AIN 221
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ + ++ G RR P+ D
Sbjct: 222 --RKVVAAAAKAEETGKRRG-----------------------------------PKRGD 244
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241
+ H+ + MLPAI+FIF+R GCDAAV+ L + +D SE E L+ D
Sbjct: 245 VVQHMATAGMLPAIYFIFSRVGCDAAVRALL-IDRVDYSSPSEREEILRTIDAGVADLTE 303
Query: 242 EPA--------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
E + L +G AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPA
Sbjct: 304 EDLNVLGFRQWRRALSRGFAAHHAGMLPAFRHIVEDLFARGLLKVCFATETLALGINMPA 363
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT----PYEGAEECC 349
R+ VL L K LT + Q+ GRAGRRGID +G+ V++ + PY A+
Sbjct: 364 RSVVLEKLVKFNGETHADLTPGQYTQLTGRAGRRGIDTKGNAVVLWSQGMDPYGVADLAS 423
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
+ PL S F Y M +NL+ L+EA +L+ +SF
Sbjct: 424 TRTY----PLDSTFRPGYNMAVNLIGTM-------------------GLDEAHRLLLRSF 460
Query: 410 GNYVGSNVMLAAKDELCKIQKE 431
Y + ++ + +++ K ++E
Sbjct: 461 AQYQTNGAVVESAEQIEKRRRE 482
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 747 LDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLW 806
L+ N+ I GE + I E++L +A LR I +L PA+LAAV ++ V E +
Sbjct: 713 LEGNSARITMEGERLSKIHHESDLLVAQCLRRGIWDELDPAELAAVASTCVFENRRDSGA 772
Query: 807 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWR 866
K++ EP I+ + + S+ +++H + + + F+ V W +G
Sbjct: 773 KDDGVPTEPLAEAISQTWRIYQELSTD---EQRHRLTVTREPELGFATAVHQWTAGAPLE 829
Query: 867 EMMM-----DCALDDGDLARLLRRTIDLLAQI 893
+ L GD R RR IDLL QI
Sbjct: 830 YCLRAAEASGATLTPGDFVRWCRRVIDLLDQI 861
>gi|171742931|ref|ZP_02918738.1| hypothetical protein BIFDEN_02049 [Bifidobacterium dentium ATCC
27678]
gi|171278545|gb|EDT46206.1| DEAD/DEAH box helicase [Bifidobacterium dentium ATCC 27678]
Length = 857
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 238/487 (48%), Gaps = 83/487 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T+LI S
Sbjct: 154 VILDEVHYLADRFRGPVWEEVIIHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVS 213
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGG 137
+RPVPL + T+ L+ L + H ++ + LN +L + + + G
Sbjct: 214 EKRPVPLEQHVLVQADDRTEPELIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQG 272
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPA 194
++R RK + + S + + R P+ V+D L L DMLP
Sbjct: 273 AQRPERRKGKGKGPWH----------DRESSHKVER-HTPKRWAVVDELNFL---DMLPG 318
Query: 195 IWFIFNRRGCDAAVQYLEDCNL--------------LDECEMSEVELALKRFRILYPDAV 240
I+FIF+R GCD AV+ + L +DE M + +L+ + + L+
Sbjct: 319 IYFIFSRNGCDQAVEQCINAGLELTSNGEVRRIRRIVDE--MIDGQLSQEDLKALHFSQF 376
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
R L +G A HHAG + +++ +E LF+ GLVKVVFATETLA GINMPAR V+
Sbjct: 377 R----FALEEGFAPHHAGMIALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEK 432
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 356
L K +G + LT E Q+ GRAGRRGID GH V+V P A K ++
Sbjct: 433 LEKYDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY--- 489
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
PL S F ++ M +NLL N SD E AR ++ SF + +
Sbjct: 490 -PLHSSFRPTFNMAVNLL---------NSSD----------YETARITLDHSFAQWEANE 529
Query: 417 V---MLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ A D L K ++ T E D A + R LSE E L+ E+
Sbjct: 530 SAWQLEAQMDTLKKALEGYEHAFTCEFGDFADFMRLRMRLSELEKNERRRLKHEV----- 584
Query: 473 FRTELRR 479
FRT+ R
Sbjct: 585 FRTQSER 591
>gi|378717910|ref|YP_005282799.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
gi|375752613|gb|AFA73433.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
Length = 945
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 206/399 (51%), Gaps = 47/399 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T +I
Sbjct: 140 VVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGEWIQTVRGDTTVIVD 199
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPLT + + L L D +G + + +N E+K + +H
Sbjct: 200 DHRPVPLTQHMLVGSRLFDLFDSRGAAGDHRPKVN------PELKRFI----------RH 243
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ ++ + + R QV + L +LPAI FIF+R GCD
Sbjct: 244 RMLLDDDDDQRGRRGRGRPRRKPGPPRPQV------VARLEKEGLLPAIGFIFSRAGCDG 297
Query: 207 AV-QYLED-CNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
A+ Q L NLL +++ V EL+ +L D R GL +G AAH
Sbjct: 298 ALAQCLRSGLNLLTPDQVAAVDDVVDRHLTELSPADADVLGVDEWR----AGLRRGFAAH 353
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K + L+
Sbjct: 354 HAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKFNGEAHVDLSPG 413
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-- 373
E Q+ GRAGRRGID GH V+V +P E+ L A PL S F Y M +NL
Sbjct: 414 EFTQLTGRAGRRGIDVEGHAVIVWSPELIPEQVAGLAGARTFPLRSSFAPEYNMAVNLIG 473
Query: 374 ---LAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQS 408
LAG++ L N S QA RS + +ARK+ E S
Sbjct: 474 RLGLAGSR--DLLNRS--FAQFQADRSVVGQARKVDEMS 508
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813
+ P GE + I E++L + +R I L P LAAV A++V E + ++
Sbjct: 772 VTPTGEVLSRIYSESDLVVTECIRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSG 831
Query: 814 EPS--TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
P+ T + + + + S ++ +H V D+ FS V W SG + E +
Sbjct: 832 NPALRTAIADTVGIW----RSVTAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAA 887
Query: 872 CA-----LDDGDLARLLRRTIDLLAQI 893
L GD R R+ +DLL QI
Sbjct: 888 AGERGHLLSPGDFVRWNRQVVDLLEQI 914
>gi|333919686|ref|YP_004493267.1| putative helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481907|gb|AEF40467.1| Putative helicase [Amycolicicoccus subflavus DQS3-9A1]
Length = 911
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 211/456 (46%), Gaps = 47/456 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ +V ++ LSATV+NA+E W+ + G T +I
Sbjct: 133 VVMDEVHFLADRFRGAVWEEVILHLADDVALVSLSATVSNAEEFGAWMETVRGDTTVIVD 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR---RRNS 143
RPVPL + LL L + + +LN L+ + G R R+++
Sbjct: 193 ETRPVPLWQHMLVGPRLLDLFPSRSTGKGSR-ALNPDLLAHVRKRLAAAGAERGHYRQSN 251
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
R N R + P + + L +LPAI F+F+R G
Sbjct: 252 RDRGRFRGGNGA-----------------RYRPPGRAEIIARLDGEGLLPAITFVFSRAG 294
Query: 204 CDAAVQYLEDCNL--LDECEMSEVE-LALKRFRILYPDAVREPAIKG----LLKGVAAHH 256
CDAAV L E E E+ + K L P ++ G L +G+AAHH
Sbjct: 295 CDAAVGQCVRAGLALTTEAEAKEIRAIITKHTGELPPADLQVLGFSGWCTALERGIAAHH 354
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP ++ +EELF +GLV+ VFATETLA GINMPART VL SL K LT E
Sbjct: 355 AGMLPAFRHTVEELFVKGLVRAVFATETLALGINMPARTVVLESLVKFNGDTHADLTPGE 414
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID GH V++ P E L PL S F Y M +NLL
Sbjct: 415 YTQLTGRAGRRGIDIEGHAVVLWQPGVDPEMVAGLASTRTFPLRSSFAPGYNMAINLL-- 472
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 436
R E+AR L+E+SF + ++ A + + ++E + L
Sbjct: 473 -----------------RQRPAEDARALLERSFAQFQTDRSVVGAARTVERNERELERLE 515
Query: 437 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ D L + +L+ AE+R
Sbjct: 516 GRVDCHLGDFAEYARLRRGISQREKDLERSATAERR 551
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE----TRALDINTQVIFPLGETAA 762
E+ RLKA + RL +++ S + F RI ++ E + A D + GE +
Sbjct: 693 ERYDRLKADTDRLRRQMNLASSSLARTFDRIVTLLTERGYVSEASDTADSTVTEEGEWLS 752
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
I E++L +A LR I L PA+LAA +++V E + + + ++ +
Sbjct: 753 RIYSESDLLVAEALRRGIWKGLGPAELAATVSAVVFETRREGVTAGHVPTAPLRRSLADT 812
Query: 823 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-ALDDGDLAR 881
+ + +E S L +H + D+ F WA+ E ++ + GD R
Sbjct: 813 MRIWEEIHSDEL----RHKLPTMREPDAGFVHAAYLWATEAPLVEALLAANEISAGDFVR 868
Query: 882 LLRRTIDLLAQI 893
R+ IDLL QI
Sbjct: 869 WCRQLIDLLDQI 880
>gi|443628832|ref|ZP_21113172.1| putative Helicase [Streptomyces viridochromogenes Tue57]
gi|443337703|gb|ELS52005.1| putative Helicase [Streptomyces viridochromogenes Tue57]
Length = 950
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 169/503 (33%), Positives = 241/503 (47%), Gaps = 81/503 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D
Sbjct: 216 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEATRPSYQD--- 271
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + + P+VI+ L + +LPAI FI
Sbjct: 272 -RRRGRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFI 317
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R C+AAVQ L DE +V ++ P RE ++GL
Sbjct: 318 FSRAACEAAVQQCLYAGLRLNDEEARDKVRALVEERTASIP---REDLHVLGYYEWLEGL 374
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 375 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 434
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ E L PL S F SY
Sbjct: 435 HADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYN 494
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAK 422
M +NL+ Q GR +R+L+E SF + VG + +
Sbjct: 495 MAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRN 535
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
+E KE+ +T + D ++E A L+ ELK + EL R+
Sbjct: 536 EEGLAGYKES--MTCHLGD---------------FEEYARLRRELKDRE---NELARQGA 575
Query: 483 LKRFSALKDILKDFENG---HLP 502
+R + L+ + G H+P
Sbjct: 576 AQRRAEAAVALEKLKPGDVIHVP 598
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR ++ L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRERVWEGLGPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGE 844
Query: 819 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDALEEDFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 878 DLARLLRRTIDLLAQIPKLPDVD----QRLQKNAVDA 910
D R ++ ID+L QI V+ + + AVDA
Sbjct: 902 DFVRWCKQVIDVLGQISAASPVEGSTVAKSARKAVDA 938
>gi|254569054|ref|XP_002491637.1| Putative RNA helicase [Komagataella pastoris GS115]
gi|238031434|emb|CAY69357.1| Putative RNA helicase [Komagataella pastoris GS115]
gi|328351858|emb|CCA38257.1| antiviral helicase SKI2 [Komagataella pastoris CBS 7435]
Length = 1233
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 199/371 (53%), Gaps = 24/371 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P+ V+I+ LSATV N E A W+G+ K
Sbjct: 395 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPEHVKIVMLSATVPNTMEFASWVGRTKQKDV 454
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-----G 136
+I++ +RP+PL + K+ L ++D + + N+ S VKP K+
Sbjct: 455 YVISTPKRPIPLEIFVWAKSDLFKVVDSNRNFLEK----NFQAHSDVLVKPKKEVTGSQA 510
Query: 137 GSR--RRNSR--KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV---IDTLWHLRSR 189
G+R R N+R S++ V+S G+ S N + P + + +LRS
Sbjct: 511 GNRGGRGNARGASRGGRGSSSTVSSRGRGG-SANVGTRFTKRDGPNKKTWTNLVQYLRSH 569
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI--- 245
D+LP++ F+F++ C+ L+ N E S + + + + RE P I
Sbjct: 570 DLLPSVIFVFSKARCEEYADSLQGVNFCTGSERSRIHMFIDKAVSRLKKEDRELPQIMKM 629
Query: 246 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+ L +G+A HH G LPI K IE LF + L+KV+FATET A G+N+P RT V S L K
Sbjct: 630 REMLSRGIAVHHGGLLPIMKEVIEILFAKTLIKVLFATETFAMGLNLPTRTVVFSELRKH 689
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQF 363
+G L E QM+GRAGRRG+D G V+++ + + + GV LVSQF
Sbjct: 690 DGTGFRNLLPGEFTQMSGRAGRRGLDTTGTVIVMSYNEPLESKPFQQITLGVPTKLVSQF 749
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 750 RLTYNMILNLL 760
>gi|383649789|ref|ZP_09960195.1| helicase [Streptomyces chartreusis NRRL 12338]
Length = 933
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 206/406 (50%), Gaps = 57/406 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 141 LLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGS 138
TE+I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D
Sbjct: 201 TEVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRMARMEATRPSYQD--- 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RRR + AD + + + P+VI+ L + +LPAI FI
Sbjct: 257 RRRGRLREADRER------------ERRQRSRVWTPSRPEVIE---RLDAEGLLPAITFI 301
Query: 199 FNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPA-----------IK 246
F+R C+AAVQ L L++ E E AL R PA ++
Sbjct: 302 FSRAACEAAVQQCLYAGLRLNDEEAREQVRALVEERT-----ASIPAEDLHVLGYYEWLE 356
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 357 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 416
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 417 EQHADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFKPS 476
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Y M +NL+ Q GR +R+L+E SF +
Sbjct: 477 YNMAVNLVE-----------------QFGR--HRSRELLETSFAQF 503
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 715 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYG 772
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST-------TV 819
E +L + LR + L PA+LA ++LV E R+ + + PS +
Sbjct: 773 ELDLLASECLREGVWEGLGPAELAGCVSALVYE---ARVGDDALAPKLPSGRAKAALGEM 829
Query: 820 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F + E G P D F+ WASG E++ + + GD
Sbjct: 830 VRIWGRLDALEEEFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGD 886
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID+L QI + KNA A +++ R
Sbjct: 887 FVRWCKQVIDVLGQIAAAAPQGSSVVKNARKAVDLLLR 924
>gi|344998672|ref|YP_004801526.1| DSH domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344314298|gb|AEN08986.1| DSH domain protein [Streptomyces sp. SirexAA-E]
Length = 943
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 164/519 (31%), Positives = 246/519 (47%), Gaps = 92/519 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQALVGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPASVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTS 128
+ + G T++I S RPVPL + + L +E+ H R +++ + ++L+
Sbjct: 194 LDTVRGDTQVIVSEHRPVPLWQHVMAGRRMYDLFEEETDHGGRGTGRREVNPDLVRLARM 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E + + RRR + + + + + I P+VID L +
Sbjct: 254 ENQRGYNPRERRRGK-----------MVREADRERERRARSRIWTPSRPEVID---RLDA 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----P 243
+LPAI FIF+R C+AAVQ +C + + L + R L + V E P
Sbjct: 300 EGLLPAITFIFSRAACEAAVQ---------QCLAAGLRLNDEDKRRLVREIVEERTASIP 350
Query: 244 A-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMP
Sbjct: 351 GEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMP 410
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
AR+ VL L K +T E Q+ GRAGRRGID GH V++ G +
Sbjct: 411 ARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTGLAG 468
Query: 353 FAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
AG PL S F SY M +NL+ Q GR +R+L+E SF
Sbjct: 469 LAGTRTYPLRSSFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFA 509
Query: 411 NYVGSNVMLAAKDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE 466
+ ++ ++ + ++ + +T + D ++E A L+ +
Sbjct: 510 QFQADRSVVGISRQVQRNEEGLEGYREGMTCHLGD---------------FEEYARLRRD 554
Query: 467 LKAEKRFRTELRRRMELKRFSALKDILKDFENG---HLP 502
LK + TEL ++ +R A L+ + G H+P
Sbjct: 555 LKDRE---TELAKQGAAQRRVAAASSLEKLKPGDVIHVP 590
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL+ +++L KRIE + + F RI ++ E LD + + G A +
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTGNGRRLARLY 779
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR+ + L PA+LAA ++LV E R + + PS
Sbjct: 780 GELDLLASECLRDGVWEGLNPAELAACVSALVYE---ARQADDAVAPKLPSGPAKVAMGE 836
Query: 819 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F + E G P D F+ V WASG T E++ + + G
Sbjct: 837 MVRIWGRLDALEEDFKISQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAG 893
Query: 878 DLARLLRRTIDLLAQI 893
D R ++ ID+L QI
Sbjct: 894 DFVRWCKQVIDVLGQI 909
>gi|213408937|ref|XP_002175239.1| antiviral helicase SKI2 [Schizosaccharomyces japonicus yFS275]
gi|212003286|gb|EEB08946.1| antiviral helicase SKI2 [Schizosaccharomyces japonicus yFS275]
Length = 1189
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 192/365 (52%), Gaps = 17/365 (4%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 356 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPAHVTLILLSATVPNTKEFASWVGRTKKKNI 415
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK--DGGSR 139
+I++S+RPVPL Y + ++D+ NR LS Y + S + P K +
Sbjct: 416 YVISTSKRPVPLEHYLYVNQNMYKIVDQN----NRFLSDGYKEASLALKGPEKVIPPAQK 471
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLS----KNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+N + Q++ + ++ A R V + + HL+ +++LP I
Sbjct: 472 NQNGTRGRGNPRGRGNQRGRGSQVNLMRGRGNVRAGERRDVNVWVHLVGHLQKQNLLPVI 531
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI----KGLLK 250
F+F+++ C+ V L + L + E SEV + + K L + P I L +
Sbjct: 532 VFVFSKKRCEEYVDTLANRTLNTQKEKSEVHIVIEKAIARLKKEDRNLPQIGRMRDMLSR 591
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+A HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K
Sbjct: 592 GLAVHHGGLLPIVKEIVELLFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRSFR 651
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E Q +GRAGRRG+D+ G V +LV++ ++ LVSQF +Y M
Sbjct: 652 DLLPGEYTQCSGRAGRRGLDSTGTVIILVRSDIPDTASLHHMILGTPTKLVSQFRLTYNM 711
Query: 370 VLNLL 374
VLNLL
Sbjct: 712 VLNLL 716
>gi|50842859|ref|YP_056086.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|335053752|ref|ZP_08546583.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|387503755|ref|YP_005944984.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
gi|422456974|ref|ZP_16533636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|50840461|gb|AAT83128.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|315105965|gb|EFT77941.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|333766421|gb|EGL43727.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|335277800|gb|AEH29705.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLLGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|407935789|ref|YP_006851431.1| helicase [Propionibacterium acnes C1]
gi|407904370|gb|AFU41200.1| putative helicase [Propionibacterium acnes C1]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422501935|ref|ZP_16578180.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315084841|gb|EFT56817.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSRIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|295130913|ref|YP_003581576.1| putative helicase [Propionibacterium acnes SK137]
gi|417929614|ref|ZP_12572998.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|422387607|ref|ZP_16467719.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392386|ref|ZP_16472456.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|422426215|ref|ZP_16503139.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422475485|ref|ZP_16551932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422478627|ref|ZP_16555046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422518975|ref|ZP_16595043.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422522233|ref|ZP_16598263.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527618|ref|ZP_16603608.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422530163|ref|ZP_16606127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422560613|ref|ZP_16636300.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|291375376|gb|ADD99230.1| putative helicase [Propionibacterium acnes SK137]
gi|313771905|gb|EFS37871.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313809630|gb|EFS47366.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313829950|gb|EFS67664.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313833045|gb|EFS70759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314972883|gb|EFT16980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314975694|gb|EFT19789.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|314984122|gb|EFT28214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|327330048|gb|EGE71801.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|327442720|gb|EGE89374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|328761431|gb|EGF74957.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|340773737|gb|EGR96229.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTSGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422450854|ref|ZP_16527567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|315109469|gb|EFT81445.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422431407|ref|ZP_16508285.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|422534720|ref|ZP_16610644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|314978079|gb|EFT22173.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|315088266|gb|EFT60242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
Length = 917
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 193/397 (48%), Gaps = 35/397 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDGGSRRRNSR 144
RRPVPL + + L L D + R +N ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSR-----RPTGVNPELTSIAKEEARFQRDDSRRPRGRS 241
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRR 202
+ + FG + R Q I + L ++LPAI F+F+R
Sbjct: 242 GKGKRSVSYGTGRFGGTSAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRS 301
Query: 203 GCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAH 255
GCDAAV L + +L+ + +L A +R L + R + +G+AAH
Sbjct: 302 GCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAH 361
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T
Sbjct: 362 HAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPG 421
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 422 EYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG 481
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 -----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|375095518|ref|ZP_09741783.1| superfamily II RNA helicase [Saccharomonospora marina XMU15]
gi|374656251|gb|EHR51084.1| superfamily II RNA helicase [Saccharomonospora marina XMU15]
Length = 919
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 210/426 (49%), Gaps = 61/426 (14%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V + + + L D+ +V+DE+HYL+D RG VWEE+I++ P+ V+++ L
Sbjct: 121 QIVVMTTEVLRNMLYAGSTTLRDLGYVVMDEIHYLADRFRGAVWEEVILHLPEYVRLVGL 180
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR---K 117
SATV+NA+E W+ + G T ++ RPVPL + LL L G+H + +
Sbjct: 181 SATVSNAEEFGEWLIAVRGDTTVVVDEHRPVPLWQHMMVGGRLLDLF--AGEHRDSGEPR 238
Query: 118 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177
++ N L+ + + G R G + + R + P
Sbjct: 239 INPNLLRKVEDAARMHAPAGLR-------------------GPRGPRRGQPPRLPRYRPP 279
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VE 226
I+ + L +LPAI FIF+R GCDAAV Q + L+ E +E E
Sbjct: 280 SRIEVVDRLDRAGLLPAIVFIFSRAGCDAAVAQCVRSGLRLNTPEETEQVRRIVAERTAE 339
Query: 227 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
L +L RE GL +G+AAHHAG LP +K +EELF +GLVK VFATETLA
Sbjct: 340 LPETDLAVLGYWEWRE----GLEQGIAAHHAGLLPAFKETVEELFVQGLVKAVFATETLA 395
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 396 LGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVDPR 455
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
+ L PL S F Y M +NL+ Q G + +AR+L+E
Sbjct: 456 QVAGLASTRTYPLRSSFRPGYNMAINLVG-----------------QFGAA--QARELLE 496
Query: 407 QSFGNY 412
QSF +
Sbjct: 497 QSFAQF 502
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL A + +L +++ S + F RI +++ E L + G + +
Sbjct: 701 ERYQRLSAENTQLERKVAATTHSLARAFDRIRSLLTERGYLGEGGNEVTEHGRLLSRLYS 760
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R+++ L +LAAV ++LV E K + + PS V
Sbjct: 761 ESDLLAAECIRHRVWNGLTAPELAAVVSALVYEARK----DSAAEPKLPSGAVPGAWQQT 816
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ + ++ + +H ++ D+ F+ V WA G + ++ L GD R
Sbjct: 817 VKLWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLERVLTAADANGQELSAGDFVR 876
Query: 882 LLRRTIDLLAQI 893
R+ IDLL QI
Sbjct: 877 WSRQVIDLLDQI 888
>gi|354607342|ref|ZP_09025312.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
gi|386024336|ref|YP_005942641.1| putative helicase HelY [Propionibacterium acnes 266]
gi|422385793|ref|ZP_16465918.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|422449464|ref|ZP_16526189.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422481002|ref|ZP_16557405.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422483509|ref|ZP_16559898.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422488259|ref|ZP_16564588.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422490362|ref|ZP_16566677.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498131|ref|ZP_16574403.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422505892|ref|ZP_16582115.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422507318|ref|ZP_16583522.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422513760|ref|ZP_16589883.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422551862|ref|ZP_16627653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422555896|ref|ZP_16631658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422568274|ref|ZP_16643892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313807138|gb|EFS45633.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313819334|gb|EFS57048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313819983|gb|EFS57697.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313823224|gb|EFS60938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313824987|gb|EFS62701.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314924822|gb|EFS88653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314960620|gb|EFT04722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314986240|gb|EFT30332.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314989545|gb|EFT33636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315086014|gb|EFT57990.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|327327909|gb|EGE69683.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|327443949|gb|EGE90603.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328755038|gb|EGF68654.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|332675794|gb|AEE72610.1| putative helicase HelY [Propionibacterium acnes 266]
gi|353557457|gb|EHC26826.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
Length = 917
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|383831485|ref|ZP_09986574.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
gi|383464138|gb|EID56228.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
Length = 946
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 199/394 (50%), Gaps = 45/394 (11%)
Query: 4 RIVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V M+ +ES L D+ +V+DEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 141 QIVVMTTEVLRNMLYAESSTLDDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGL 200
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL----------DEK 110
SATV+NA+E W+ ++ G T+++ RPVPL + +L L EK
Sbjct: 201 SATVSNAEEFGEWLMEVRGDTDVVVDEHRPVPLWQHMFVGGRMLDLFAGERIDTEGTGEK 260
Query: 111 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
G+ KL+ L + +D +R HA + + +
Sbjct: 261 GEKGEAKLNPQLL-------RKVED------TARMHAPAGLRG--------RGRRGAPYR 299
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELA 228
R + P + + L + +LPAI FIF+R GCDAAV L E+ +V
Sbjct: 300 GPRYRPPSRTEIVDRLDAAGLLPAIVFIFSRAGCDAAVAQCVRSRLRLNGPEEIEQVRRI 359
Query: 229 LKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
+ P + + A+ G L +G+AAHHAG LP +K +EELF RGLVKVVFA
Sbjct: 360 VDERTAELPQS--DLAVLGYWEWREALEQGIAAHHAGLLPAFKETVEELFVRGLVKVVFA 417
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPART VL L K + LT E Q+ GRAGRRGID GH V+V P
Sbjct: 418 TETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQP 477
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
+ L PL S F Y M +NL+
Sbjct: 478 GVDPRQVAGLASTRTYPLRSSFRPGYNMAVNLVG 511
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL+A +++L +++ S + F RI ++ E LD + G A +
Sbjct: 728 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGFLDTEGDAVTEHGRLLARLYS 787
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + ++ ST + V
Sbjct: 788 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARRDATTESKLPAGPVSTAWQETVRVW 847
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ +E + +H ++ D+ F+ V WA G T +++ L GD R
Sbjct: 848 ----TDLVEDERRHRLDRTREPDAGFAWPVYRWARGETLEKVLTAAEVNGQELSAGDFVR 903
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 904 WSRQVVDLLDQIKDVLGREHPVGGAAGKASRLLRR 938
>gi|145594787|ref|YP_001159084.1| DSH domain-containing protein [Salinispora tropica CNB-440]
gi|145304124|gb|ABP54706.1| DSH domain protein [Salinispora tropica CNB-440]
Length = 935
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 139/399 (34%), Positives = 186/399 (46%), Gaps = 61/399 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G+TE++ S
Sbjct: 166 VVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFADWLVTVRGETEVVVS 225
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L + + L+ + ++
Sbjct: 226 EHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRYTRDTLR--------------- 270
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ S + + +R P ++D L +LPAI FIF+R GCDA
Sbjct: 271 -RLESGEGRGAGPGGRRGPRWRGPMR----PDIVD---RLDREGLLPAILFIFSRAGCDA 322
Query: 207 AVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVA 253
AVQ L E +E+ R++ P + GL +G+A
Sbjct: 323 AVQQCLAAGLRLTGPEERAEIR------RVVESRITTIPGEDLSVLGYWDWLDGLERGLA 376
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR VL L K + LT
Sbjct: 377 AHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLT 436
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V+V +P L PL S F SY M +NL
Sbjct: 437 PGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNL 496
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ E AR L+E SF +
Sbjct: 497 VGSVGA-------------------EPARALLESSFAQF 516
>gi|422539058|ref|ZP_16614931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313764063|gb|EFS35427.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
Length = 917
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422545031|ref|ZP_16620861.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314963152|gb|EFT07252.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
Length = 917
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|289428231|ref|ZP_06429927.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|289158612|gb|EFD06819.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
Length = 917
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 193/397 (48%), Gaps = 35/397 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDGGSRRRNSR 144
RRPVPL + + L L D + R +N ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSR-----RPTGVNPELTSIAKEEARFQRDDSRRPRGRS 241
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRR 202
+ + FG + R Q I + L ++LPAI F+F+R
Sbjct: 242 GKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRS 301
Query: 203 GCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAH 255
GCDAAV L + +L+ + +L A +R L + R + +G+AAH
Sbjct: 302 GCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAH 361
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T
Sbjct: 362 HAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPG 421
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 422 EYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG 481
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 -----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|289425376|ref|ZP_06427153.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|365963071|ref|YP_004944637.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965312|ref|YP_004946877.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974245|ref|YP_004955804.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
gi|422427690|ref|ZP_16504601.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422433569|ref|ZP_16510437.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436141|ref|ZP_16512998.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438458|ref|ZP_16515302.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444448|ref|ZP_16521242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445150|ref|ZP_16521904.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422453729|ref|ZP_16530416.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422501714|ref|ZP_16577968.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422510256|ref|ZP_16586402.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422516643|ref|ZP_16592752.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422524000|ref|ZP_16600009.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422531964|ref|ZP_16607910.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422543279|ref|ZP_16619129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548203|ref|ZP_16624019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550092|ref|ZP_16625892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422558612|ref|ZP_16634352.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562665|ref|ZP_16638342.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422571695|ref|ZP_16647276.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|289154354|gb|EFD03042.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|313792458|gb|EFS40551.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313801496|gb|EFS42745.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313816413|gb|EFS54127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313827289|gb|EFS65003.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|314917850|gb|EFS81681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314919739|gb|EFS83570.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314930018|gb|EFS93849.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314956405|gb|EFT00717.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957274|gb|EFT01377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967723|gb|EFT11822.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|315078215|gb|EFT50258.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315098195|gb|EFT70171.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101650|gb|EFT73626.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|327452354|gb|EGE99008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327452770|gb|EGE99424.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453522|gb|EGF00177.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328752637|gb|EGF66253.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328753810|gb|EGF67426.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|365739752|gb|AEW83954.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741993|gb|AEW81687.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744244|gb|AEW79441.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
Length = 917
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 195/396 (49%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|433605012|ref|YP_007037381.1| putative helicase [Saccharothrix espanaensis DSM 44229]
gi|407882865|emb|CCH30508.1| putative helicase [Saccharothrix espanaensis DSM 44229]
Length = 918
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 201/411 (48%), Gaps = 58/411 (14%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 133 LYAGSSTLNSLAYVVMDEVHYLADRFRGPVWEEVILHLPESVRLVGLSATVSNAEEFGEW 192
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ ++ G T ++ RPVPL + ++ L + +L+ L+ T ++ Y
Sbjct: 193 LVEVRGDTTVVVDEHRPVPLWQHMLAGGRMMDLFAGEDAEGATRLNPQLLR-HTEDLFRY 251
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
SR +N++ S + P +D + L +LP
Sbjct: 252 HVPWSRNKNNKGRPPRGSG---------------------FKPPSRVDIVQRLDGAGLLP 290
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL---- 249
AI F+F+R GCDAAV L E +EVE+ R + R+ L+
Sbjct: 291 AIDFVFSRAGCDAAVGQCVRAGLRLTAE-AEVEV----IREIIDSKTRDLPQGDLMVLGY 345
Query: 250 --------KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+G+A+HHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L
Sbjct: 346 WEWRDALERGIASHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLEKL 405
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K + LT E Q+ GRAGRRGID GH V+V P + L PL S
Sbjct: 406 VKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGIDPKAVAGLASTRTYPLRS 465
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
F Y M +NL+ Q G + AR+++EQSF +
Sbjct: 466 SFRPGYNMAVNLVN-----------------QLGAA--AAREILEQSFAQF 497
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL----DINTQVIFPLGETAA 762
E+ RL A +++L +++ S +EF RI ++ E L + + + G+
Sbjct: 696 ERYHRLLAETEQLERKVAATTHSLAREFDRIRGLLRERGYLHEQENGPGEEVTEHGKRLT 755
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG-----IKVRLWKNNSSIYEPST 817
+ E++L A LR+ + L P +LAAV +SLV E ++ RL P
Sbjct: 756 RLYSESDLLAAECLRHGVWRGLDPGELAAVVSSLVYEARRDGPLETRL---------PPG 806
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD-----C 872
V + + + + + +H ++ D F+ V WA G + +++
Sbjct: 807 KVDDAMTATARLWAELEDDERRHKLDRTRQPDPGFAWPVYRWARGESLEKVLSSSEASGT 866
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
L GD R R+ ID L QI
Sbjct: 867 ELGAGDFVRWCRQVIDFLDQI 887
>gi|403725532|ref|ZP_10946615.1| putative helicase [Gordonia rhizosphera NBRC 16068]
gi|403204933|dbj|GAB90946.1| putative helicase [Gordonia rhizosphera NBRC 16068]
Length = 934
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 177/357 (49%), Gaps = 22/357 (6%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ EV+++ LSATV+NA+E WI + G T +I
Sbjct: 126 VVMDEVHFLADRFRGAVWEEVILHLDPEVRVVSLSATVSNAEEFGDWIQTVRGDTTVIVD 185
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL+ + + + L D +EV P +R R
Sbjct: 186 EHRPVPLSQHMLVGSRMFDLFDPA-------APPGPAGPRRAEVNP-----ELKRYIRNR 233
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+N ++ P D + L +LPAI FIF+R GCD
Sbjct: 234 ILLNDGRDDRRR-GRDGQAGRGAGRGGTRPPSRPDLVARLDREGLLPAIGFIFSRAGCDG 292
Query: 207 AVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAI------KGLLKGVAAHHAG 258
A++ +LL EM V+ + R I E + GL +G AAHHAG
Sbjct: 293 ALKQCLRSGLSLLGPEEMDAVDEVVDRH-IADLSPADEDILGVAEWRAGLRRGFAAHHAG 351
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP ++ +EELF GLVK+VFATETLA GINMPART VL L K + LT E
Sbjct: 352 LLPTFRHAVEELFTHGLVKMVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYT 411
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
Q+ GRAGRRGID GH V+V TP E+ L A PL S F Y M +NL+
Sbjct: 412 QLTGRAGRRGIDVEGHAVVVWTPEAVPEQVAGLAGARTFPLRSSFQPEYNMAVNLIG 468
Score = 39.7 bits (91), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G+ + I E++L + +R + L P +LAAV A++V E R + P
Sbjct: 764 GQLLSRIYSESDLLVTECIRGGVWDGLAPHELAAVVAAMVFE---TRRESFAGADAMPGN 820
Query: 818 TVI-NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA--- 873
+ N + E ++ +H + D+ FS V WASG + E +
Sbjct: 821 AALRNALARTVEIWRDVTVVEARHRIAPTREPDTGFSVAVSLWASGRSLTESLAAAGERG 880
Query: 874 --LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R +DLL QI D RL +A A + + R
Sbjct: 881 QLLSPGDFVRWNRMVVDLLEQIRLGVGADTRLADSARAAVSSIRR 925
>gi|383808204|ref|ZP_09963756.1| type III restriction enzyme, res subunit / helicase C-terminal
domain / DSHCT domain multi-domain protein [Rothia aeria
F0474]
gi|383449162|gb|EID52107.1| type III restriction enzyme, res subunit / helicase C-terminal
domain / DSHCT domain multi-domain protein [Rothia aeria
F0474]
Length = 966
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 197/428 (46%), Gaps = 72/428 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE II+ P+ V +I LSATV+N +E W+ + G T++I S
Sbjct: 149 VILDEVHYLADRFRGAVWEEAIIHLPEHVTVISLSATVSNVEEFGAWLDTVRGGTDVIVS 208
Query: 87 SRRPVPLTWYFSTKTALLPLL----DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR--- 139
RPVPL + ++ L EK R+ + + + P G R
Sbjct: 209 EHRPVPLWQHMLVGNQIVDLFTPDPGEKSASGARRATKRPRKDADEHTAP---AGMRLNP 265
Query: 140 ------------------------RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R +RKH + H N + R S+
Sbjct: 266 QLKQLRPGYGADRGYRGRGGKRERFRRTRKHHSTAQTFEDSRRTPHAAQDNPLRPHRISR 325
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMS--------E 224
P+++ TL +LPAI FIF+R GCD AV D +L+ DE + +
Sbjct: 326 -PEMVRTL---DKAGLLPAICFIFSRAGCDGAVTQCIDADLMLTTDEQQRTIRAYIAEAT 381
Query: 225 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
L + L RE GLL+G+AAHHAG LP++K +E LF GL+K+VFATET
Sbjct: 382 AHLDTRDLNTLGYYEWRE----GLLRGIAAHHAGMLPLFKETVETLFTTGLIKLVFATET 437
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART +L L+K + +T E Q+ GRAGRRGID GH V+ P
Sbjct: 438 LALGINMPARTVILEKLTKYNGETHVDITPGEYTQLTGRAGRRGIDIEGHAVIAWRPNTT 497
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
A L PL S F +Y M NL+A E RK+
Sbjct: 498 AAHVASLASTRTYPLNSSFRPTYNMAANLIAAYGA-------------------ERTRKI 538
Query: 405 VEQSFGNY 412
+E SF +
Sbjct: 539 LESSFAQF 546
>gi|184201024|ref|YP_001855231.1| putative helicase [Kocuria rhizophila DC2201]
gi|183581254|dbj|BAG29725.1| putative helicase [Kocuria rhizophila DC2201]
Length = 941
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 200/407 (49%), Gaps = 56/407 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ S D + +V+DEVHYL+D RG VWEE+II+ P+ VQ++ LS
Sbjct: 119 VVVMTTEVLRNMLYGGSATLDNLGFVVMDEVHYLADRFRGAVWEEVIIHLPEHVQLVSLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL-------DEKGKHM 114
ATV+NA+E W+ + G T+++ S RPVPL + L+ L + +H
Sbjct: 179 ATVSNAEEFGAWLDDVRGSTDVVVSEHRPVPLWQHVQVGPQLMDLFVDDTTVEEAAQRHS 238
Query: 115 NRK-----LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+R ++ L+L ++ G R R + Q ++S+ +
Sbjct: 239 DRHREEPAVNPELLRLFRTQHPRGGRAGGRGPGHRGRRRGGRQQEPRTARQDRISRPHL- 297
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL------------ 217
+RR L + MLPAI FIF+R GCDAAV +L
Sbjct: 298 -LRR------------LDAEAMLPAITFIFSRAGCDAAVAQCVAADLWLTTPQEQRTIKA 344
Query: 218 ----DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
MS +LA + Y GL++GV+AHHAG LP++K +E+LF
Sbjct: 345 FAAEATAHMSTADLAALNYEDWY---------HGLIRGVSAHHAGMLPVFKEVVEQLFSE 395
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GL+K VFATETLA GINMPAR+ VL L K R+ +T E Q+ GRAGRRGID G
Sbjct: 396 GLIKAVFATETLALGINMPARSVVLERLDKFNGEARVDITPGEYTQLTGRAGRRGIDVEG 455
Query: 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA--GAK 378
H V++ + L PL S F +Y M NL+A GAK
Sbjct: 456 HAVVLWRDGMNPQTVAGLASTRTYPLNSSFRPTYNMSTNLIARYGAK 502
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV------SEGIKVRLWKNNSS 811
GE + GE +L LA+ LR+ L L LA V +LV +G + RL
Sbjct: 776 GEQLRRLYGERDLLLALSLRDGFLDGLDAPGLAGVMTALVYQPRREDQGTRPRL------ 829
Query: 812 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREM 868
P+ + + L E+ S + +H +P + G+VEA WA G T
Sbjct: 830 ---PTAAMDAAVQTLLENWSVLSAREAEH--RLPLTAVPEL-GLVEAMHRWARGATLTRT 883
Query: 869 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
+ L GD R ++TID+L Q+ + +D L+ A +A + R
Sbjct: 884 LTGTDLAAGDFVRWAKQTIDVLDQLRGVHGLDPALRDTAHEAIEAVRR 931
>gi|441149236|ref|ZP_20965180.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619626|gb|ELQ82670.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 939
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 207/413 (50%), Gaps = 49/413 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSRSLAGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGAW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-----KGKHMNRKLSLNYLQLSTS 128
+ + G TE+I S RPVPL + + L +E KGK R+++ + +L+
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEREGQGKGKAGRREVNPDLERLARL 253
Query: 129 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
E G +RR N + + ++ I R++V +D
Sbjct: 254 ENSRPTFGRDKRRGR--------NQREADRERERRQRSRIWTPGRAEVIDRLD------Q 299
Query: 189 RDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-- 244
+LPAI FIF+R GC++AVQ L D+ + V ++ PD
Sbjct: 300 EGLLPAITFIFSRAGCESAVQQCLYSGLRLNDQEGRARVRAIVEERTAGIPDEDLHVLGY 359
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
++GL +G+AAHHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L
Sbjct: 360 YEWLEGLERGIAAHHAGMLPTFKEVVEELFLKGLVKAVFATETLALGINMPARSVVLEKL 419
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PL 359
K +T E Q+ GRAGRRGID GH V++ G + AG PL
Sbjct: 420 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPL 477
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F SY M +NL++ Q GR +R+L+E SF +
Sbjct: 478 RSSFKPSYNMAVNLVS-----------------QFGR--HRSRELLEMSFAQF 511
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 19/257 (7%)
Query: 666 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 719
H A E +++QR ++ARL+ +I R + D ++ E + RL +++L
Sbjct: 678 HIAPERHRKQRATAADDREIARLRTEI-RAHPCHGCDEREDHARWAE-RYHRLLRDTRQL 735
Query: 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+RIE + + F RI ++ E L+ +T + G A + GE +L + LR
Sbjct: 736 ERRIEGRTNTIARTFDRICGLLTELGYLEGDT--VTDEGRRLARLYGELDLLASECLRAG 793
Query: 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 839
+ L PA+LAA ++LV E R + + PS + ++ + L+E
Sbjct: 794 VWNGLGPAELAACASALVYES---RQADDAVAPKLPSGKARDALSEMVRIWGRLDALEED 850
Query: 840 HGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI- 893
H + + D F+ WASG E++ + + GD R ++ ID+L Q+
Sbjct: 851 HKINQAEGVGQREPDLGFAWAAYRWASGFGLDEVLREAEMPAGDFVRWCKQLIDILGQLA 910
Query: 894 PKLPDVDQRLQKNAVDA 910
P R + AVDA
Sbjct: 911 AAAPPEVARNARKAVDA 927
>gi|417970759|ref|ZP_12611690.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
gi|344045055|gb|EGV40729.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
Length = 929
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 189/368 (51%), Gaps = 41/368 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ + G T +I +
Sbjct: 133 VVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVRGDTRVIVT 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----PYKDG-GSR 139
RPVPL Y + ++PL E G +N++L +L++ + + Y+ G G R
Sbjct: 193 DHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAAYRSGEGFR 251
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ D + L + P+V+ L + +MLPAI FIF
Sbjct: 252 ARSKGDKQDSRTGKPRAQDRHRPLGR-----------PEVLSIL---KGINMLPAITFIF 297
Query: 200 NRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----------IK 246
+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 298 SRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQVLNFKQWRA 351
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL + K
Sbjct: 352 ALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLEKMVKFDG 411
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
G + LT + Q+ GRAGRRGID G+ V+ +P L PL+S F
Sbjct: 412 EGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYPLISTFQPG 471
Query: 367 YGMVLNLL 374
Y M +NLL
Sbjct: 472 YNMSVNLL 479
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 761
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSDPDNPVITDEGERL 767
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 910
GD R R+ IDLL Q+ K +D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYLDETTRNARQAIDA 919
>gi|354616745|ref|ZP_09034319.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353218902|gb|EHB83567.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 923
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 205/419 (48%), Gaps = 48/419 (11%)
Query: 4 RIVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V M+ + S D + +V+DE+HYL+D RG VWEE+I++ P V+++ L
Sbjct: 125 QIVVMTTEVLRNMLYAGSAALDNLGYVVMDEIHYLADRFRGAVWEEVILHLPAYVRVVGL 184
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ + G T ++ RPVPL + L+ L G+ + +
Sbjct: 185 SATVSNAEEFGEWLVAVRGDTTVVVDEHRPVPLWQHMLVGGRLMDLF--AGESDTGEAKI 242
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
N L E +R HA + + R++V +
Sbjct: 243 NPRLLRRVE-----------ETARMHAPAGAGKGGRNRRGGPPRMPRYRPPSRTEVIDRL 291
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELAL-KRFRILYP 237
D +LPAI FIF+R GCDAAV L E++EV + +R L P
Sbjct: 292 DRA------GLLPAIVFIFSRAGCDAAVTQCRHSRLRLNTPDEVAEVRRVVDERTADLPP 345
Query: 238 DAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
D + GL +GVAAHHAG LP +K +EELF RGLVKVVFATETLA GINMPA
Sbjct: 346 DDLAVLGYWEWRDGLEQGVAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPA 405
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K + LT+ E Q+ GRAGRRGID GH V++ P + L
Sbjct: 406 RTVVLERLVKYNGEAHVDLTAGEYTQLTGRAGRRGIDVEGHAVVLWQPGMDPRQVGGLAS 465
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F Y M +NL+ Q G + EAR ++E+SF +
Sbjct: 466 TRTYPLKSSFRPGYNMAVNLVG-----------------QLGAA--EARGMLERSFAQF 505
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL A + +L +++ S + F RI ++ E L + + G T + +
Sbjct: 705 ERHERLAAENDKLERKVAATTHSLARSFDRIRGLLAERGYLGDDGDEVTGHGWTLSRLYS 764
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R+++ L PA+LAAV ++LV E + + PS V +
Sbjct: 765 ESDLLAAECVRHRVWHGLGPAELAAVVSTLVYEARR----DATAEAKVPSGPVSDAWRET 820
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ ++ + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 821 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAETNGQELSAGDFVR 880
Query: 882 LLRRTIDLLAQI 893
R+ IDLL Q+
Sbjct: 881 WARQVIDLLDQL 892
>gi|269795155|ref|YP_003314610.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269097340|gb|ACZ21776.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 972
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 245/538 (45%), Gaps = 101/538 (18%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG+VWEE+II+ +VQ++ LS
Sbjct: 142 VVVMTTEVLRNMLYAASPTLDNLGFVVMDEVHYLADRFRGSVWEEVIIHLAADVQLVSLS 201
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA------LLPL----LDEKG 111
ATV+NA+E W+ + G T ++ S RPVPLT + + L L +D
Sbjct: 202 ATVSNAEEFGDWLEMVRGDTTVVVSEHRPVPLTQHVAAARRGAAPGGLFDLYAHTVDPTA 261
Query: 112 KHMNRKLSLNYLQL----------------STSEVKPYKDGGSRRRNSRKHADMNSNNIV 155
N ++ + L L S GG R ++R A
Sbjct: 262 PGPNPPINPDLLALMRQGDSFRGGGGRGRGYRSARGQGGPGGRSRDSARGSAGTTGRRGP 321
Query: 156 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 215
F V+D L R +LPAI+FIF+R GC+ AV
Sbjct: 322 ARF-------------------TVVDELEQAR---LLPAIYFIFSRAGCEGAVAQCVGSG 359
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVAAHHAGCLPIWK 264
L E EL ++ I+ P+ + L +G+AAHHAG LP++K
Sbjct: 360 L--RLTTPEQELTIRG--IVEARCANIPSEDLAVLGYWGWLDALTRGIAAHHAGMLPLFK 415
Query: 265 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 324
+EELF GLVK+VFATETLA GINMPAR+ VL L K S + LT E Q+ GRA
Sbjct: 416 ETVEELFSAGLVKIVFATETLALGINMPARSVVLEKLVKWDGSSHVDLTPGEYTQLTGRA 475
Query: 325 GRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSN 384
GRRGID GH V+V P L + PL S F +Y M +NL++
Sbjct: 476 GRRGIDVEGHAVVVDHPGLDPVVLAGLASKRLYPLKSSFAPTYNMAVNLVS--------- 526
Query: 385 ESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAI 444
Q GR E AR+++E SF + A + + K+ + S +A+
Sbjct: 527 --------QVGR--ERAREILETSFAQF-------QADRGVVGLAKQ-----AAASSEAL 564
Query: 445 DRKSRRLLSEAA-YKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
D + +L E ++E L++ L A + EL +R +R S + L+ G L
Sbjct: 565 DGYAEAMLCEQGDFREYMRLRKALSARE---AELSKRATNERRSEVVRALESLRRGDL 619
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 712 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAAIRGEN 768
L K L +RIE S K F RI +V+ L+ + V+ GE+ + E+
Sbjct: 758 LDKEHKALMRRIEGRTGSIAKVFDRICDVLRTLEYLERDEHGALVVTRAGESLKRLYAES 817
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 828
+L LA LR + DL PA LAA +++V R + P + LDE
Sbjct: 818 DLLLAECLRRGVWDDLDPAGLAAAVSTVV---YSARRDDREEEPHVPGGPDGRLARALDE 874
Query: 829 HR---SSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARL 882
S+ +L++ H +E LD G+VEA WASG + ++ L GD R
Sbjct: 875 TVRIWSALDDLEDAHRLEATGPLDM---GLVEAMHRWASGRSLDVVLKGTDLAAGDFVRW 931
Query: 883 LRRTIDLLAQIPK 895
++ ID+L Q+ K
Sbjct: 932 CKQVIDVLGQLTK 944
>gi|282853649|ref|ZP_06262986.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|282583102|gb|EFB88482.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
Length = 917
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 192/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L ++LPAI F+F+R G
Sbjct: 243 KGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHH 256
CDAAV L + +L+ + E ++ +R D R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +G+ V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422459132|ref|ZP_16535780.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|315103795|gb|EFT75771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
Length = 917
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 192/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L ++LPAI F+F+R G
Sbjct: 243 KGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHH 256
CDAAV L + +L+ + E ++ +R D R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +G+ V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|348519373|ref|XP_003447205.1| PREDICTED: helicase SKI2W isoform 1 [Oreochromis niloticus]
Length = 1244
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 198/378 (52%), Gaps = 45/378 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I +
Sbjct: 422 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI 481
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y STKT + LLD G + + Y
Sbjct: 482 YVISTLKRPVPLEHYLYTGNSTKTQKEMFLLLDATGNFLTKGY--------------YTA 527
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPA 194
+++ + KHA SFG S+N+ + RS V TL H L R P
Sbjct: 528 VDAKKERTSKHAQ--------SFGTKNTSQNTTASQDRS----VWLTLLHFLSQRQQTPV 575
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK 250
+ F F+R CD + L+ +L E +E+ + +L R R + ++ LLK
Sbjct: 576 VAFTFSRTRCDDNARSLDSMDLTTSIEKAEIHSFFQKSLTRLRGGDRQLPQILLMRDLLK 635
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
G+A HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 636 RGIAVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGF 695
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTAS 366
L E QMAGRAGRRG+D G V+++ G E L + L SQF +
Sbjct: 696 RNLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMLGKPTLLQSQFRLT 753
Query: 367 YGMVLNLLAGAKVMHLSN 384
Y M+LNLL + +H+++
Sbjct: 754 YTMILNLLR-VEALHVTD 770
>gi|256269132|gb|EEU04467.1| Ski2p [Saccharomyces cerevisiae JAY291]
Length = 1287
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 204/382 (53%), Gaps = 33/382 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGSRRRNSRKH-----------------ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
GGS R A+ + + G ++ + + + P+
Sbjct: 557 GGSTARGGHGGSNTRGGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 616
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 617 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 793
Query: 354 AGVEP-LVSQFTASYGMVLNLL 374
GV L SQF +Y M+LNLL
Sbjct: 794 MGVPTRLQSQFRLTYNMILNLL 815
>gi|386071112|ref|YP_005986008.1| putative helicase [Propionibacterium acnes ATCC 11828]
gi|353455478|gb|AER05997.1| putative helicase [Propionibacterium acnes ATCC 11828]
Length = 917
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 192/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L ++LPAI F+F+R G
Sbjct: 243 KGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHH 256
CDAAV L + +L+ + E ++ +R D R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +G+ V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422390285|ref|ZP_16470380.1| HelY [Propionibacterium acnes HL103PA1]
gi|422465274|ref|ZP_16541881.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422564375|ref|ZP_16640026.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314967064|gb|EFT11163.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315092732|gb|EFT64708.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327327198|gb|EGE68974.1| HelY [Propionibacterium acnes HL103PA1]
Length = 917
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 192/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG Q P I + L ++LPAI F+F+R G
Sbjct: 243 KGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHH 256
CDAAV L + +L+ + E ++ +R D R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +G+ V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|29833237|ref|NP_827871.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
gi|29610359|dbj|BAC74406.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
MA-4680]
Length = 937
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 165/500 (33%), Positives = 241/500 (48%), Gaps = 75/500 (15%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 141 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 200
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D
Sbjct: 201 TQVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEASRPSYQD--- 256
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R+ R + + + + + P+VI+ L + +LPAI FI
Sbjct: 257 -RKRGRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFI 302
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKG 251
F+R C+AAVQ L DE +V ++ P ++GL +G
Sbjct: 303 FSRAACEAAVQQCLYAGLRLNDEAARDKVRALVEERTASIPTEDLHVLGYYEWLEGLERG 362
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 363 IAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHAD 422
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
+T E Q+ GRAGRRGID GH V++ E L PL S F SY M +
Sbjct: 423 ITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGFSPEHLAGLAGTRTYPLRSSFKPSYNMAV 482
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDEL 425
NL+ Q GR +R+L+E SF + VG + + +E
Sbjct: 483 NLVD-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEG 523
Query: 426 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 485
+ KE+ +T + D ++E A L+ ELK + TEL ++ +R
Sbjct: 524 LEGYKES--MTCHLGD---------------FEEYARLRRELKDRE---TELAKQGAAQR 563
Query: 486 FSALKDILKDFENG---HLP 502
+ L+ + G H+P
Sbjct: 564 RAEAAVALEKLKPGDVIHVP 583
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 18/218 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 716 ERYYRLMRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTAHGKRLARLY 772
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 818
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 773 GELDLLASECLRAGVWEGLDPAELAACVSALVYES---RVGDDAMAPKLPSGKAKAALGE 829
Query: 819 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 877
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 830 MVRIWGRLDALEEDFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 886
Query: 878 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 915
D R ++ ID+L QI V A +A +D
Sbjct: 887 DFVRWCKQVIDVLGQISAAAPVRGEGSTVAKNARKAVD 924
>gi|408500978|ref|YP_006864897.1| helicase [Bifidobacterium asteroides PRL2011]
gi|408465802|gb|AFU71331.1| helicase [Bifidobacterium asteroides PRL2011]
Length = 854
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 162/502 (32%), Positives = 240/502 (47%), Gaps = 57/502 (11%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + S L + ++LDEVHYL+D RG VWEE+II+ P ++I+ LS
Sbjct: 133 IVVMTTEVLRNMLYEQSSTLTALKYVILDEVHYLADRFRGPVWEEVIIHLPASIRIVGLS 192
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKGK--- 112
ATV+N +E + WI + G+T L+ S RRPVPL + T+ +L L G
Sbjct: 193 ATVSNVEEFSDWISSVRGRTHLVVSERRPVPLEQHVLVQADRHTEPEILDLYRHDGSGRQ 252
Query: 113 --HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
+N +L QL + G R +R + + + +
Sbjct: 253 TPKINPRLVSRLAQLDKT--------GQERAQARDQGHHHRHGRGGR------PERRMGE 298
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDE-------- 219
R V+D L + DMLP I+FIF+R GCD AVQ L DE
Sbjct: 299 RYRPSRADVVDELDFM---DMLPGIYFIFSRTGCDQAVQQCIRAGLQLTTDEEARRIRHI 355
Query: 220 -CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
M+ +L+ + + L R L +G AAHHAG + +++ +E LF+ GL+KV
Sbjct: 356 VDSMAAGQLSKEDLKALGFSQFR----FALEQGFAAHHAGVVTLFRQIVEHLFELGLLKV 411
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
VFATETLA GINMPAR V+ L K +G + LT E Q+ GRAGRRGID+ GHVV+V
Sbjct: 412 VFATETLALGINMPARCVVVEKLEKFDGTGHVALTPGEFTQLTGRAGRRGIDDIGHVVVV 471
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL-QAGRS 397
+ L V PL S F ++ M +NLL + + D A +A RS
Sbjct: 472 DHRDFSPKTMAALSSRRVYPLHSSFRPTFNMAVNLLNSSSYGRARDTLDHSFAQWEANRS 531
Query: 398 ---LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 454
LEE + + +Y ++ +L + + L+S +D K +R SE
Sbjct: 532 ASELEERIETLTSGLEDY--RKAARCSRGDLIEFMRIRAALSSAQKNDRRRLKRQRFTSE 589
Query: 455 A----AYKEMANLQEELKAEKR 472
A++++ ++L+ ++R
Sbjct: 590 KARDRAFRDLDRHIDQLREQER 611
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 31/270 (11%)
Query: 675 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIK------------------RLKARS 716
+R K R + AR F++ + +D ++ E R+
Sbjct: 579 RRLKRQRFTSEKARDRAFRDLDRHIDQLREQERNHPCRQCPDLPKHLRWGNRWIRMDKEL 638
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVI---HETRALDINTQVIFPLGETAAAIRGENELWLA 773
+R ++ E S ++F RI ++ H TR +D + + G+ I E +L LA
Sbjct: 639 QRTREQYESKTGSVSRQFDRICQILADLHYTRPVDPDDCRLTRKGQLLRRIYSEQDLSLA 698
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 833
+L IL DL+PA+LAA + LV E R ++ +++ + +
Sbjct: 699 EILDRGILNDLEPAELAAAVSGLVYES---RRGVGEQPGERAGYRAHRLVEAMEDMKRQW 755
Query: 834 LELQEK---HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 890
++QE+ G+E+P LD + WA G + ++ D L GD R +R D+L
Sbjct: 756 SQVQERCDQAGLELPPELDFGLGPTIYDWACGDSLTAILRDSDLTAGDFVRNAKRLSDVL 815
Query: 891 AQI----PKLPDVDQRLQKNAVDASNVMDR 916
QI P L L + A A++ ++R
Sbjct: 816 TQIVQVEPYLGRGGHHLARTASIAADQVNR 845
>gi|145295622|ref|YP_001138443.1| hypothetical protein cgR_1549 [Corynebacterium glutamicum R]
gi|140845542|dbj|BAF54541.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 929
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 189/368 (51%), Gaps = 41/368 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ + G T +I +
Sbjct: 133 VVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVRGDTRVIVT 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----PYKDG-GSR 139
RPVPL Y + ++PL E G +N++L +L++ + + Y+ G G R
Sbjct: 193 DHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAAYRSGEGFR 251
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ D + L + P+V+ L + +MLPAI FIF
Sbjct: 252 ARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINMLPAITFIF 297
Query: 200 NRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----------IK 246
+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 298 SRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQVLNFKQWRA 351
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL + K
Sbjct: 352 ALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLEKMVKFDG 411
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
G + LT + Q+ GRAGRRGID G+ V+ +P L PL+S F
Sbjct: 412 EGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYPLISTFQPG 471
Query: 367 YGMVLNLL 374
Y M +NLL
Sbjct: 472 YNMSVNLL 479
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 14/216 (6%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 761
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSDPDNPVITDEGERL 767
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 910
GD R R+ IDLL Q+ K D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYFDETTRNARQAIDA 919
>gi|309813099|ref|ZP_07706823.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
gi|308432903|gb|EFP56811.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
Length = 929
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 209/423 (49%), Gaps = 41/423 (9%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE++I+ P+ VQ+I LSATV+NA+E W
Sbjct: 131 LYAGSSTLGGLGFVVMDEVHYLADRFRGAVWEEVMIHLPESVQVIALSATVSNAEEFGDW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVK 131
+ Q+ G T+++ + RPVPL + L LL DE+G +R ++ + L S
Sbjct: 191 MQQVRGDTDVVITEHRPVPLYQHMMVGARLYDLLGEDERG---DRVVNPDLLSRIASLTA 247
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
P + GG R D+ + + G+ + + R P+ + + L +
Sbjct: 248 PAR-GGHR-------FDVGAPSGRRGRGRRPVPRQPQGETFRP-APRA-EVIAALDRAGL 297
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLL----DECEMSEVELALKRFRILYPDAV---REPA 244
LPAI FIF+R GC+ AV L + DE +A + I D
Sbjct: 298 LPAITFIFSRAGCEGAVAQLLGYGMQLVTDDESATIRAYVAERVAHIPVEDLAVIGYHDF 357
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G AAHHAG LP ++ +EELF G +K VFATETLA GINMPAR+ VL L K
Sbjct: 358 VEGLARGFAAHHAGMLPTFREIVEELFVTGQIKAVFATETLALGINMPARSVVLERLVKY 417
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+ +T E Q+ GRAGRRGID GH +++ E L PL S F
Sbjct: 418 NGEAHVDVTPAEFTQLTGRAGRRGIDVEGHAIVLYNRGVEPEAVAGLASRRTYPLRSSFR 477
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 424
++ M +NL+ GR E AR+++E SF + ++ +
Sbjct: 478 PTFNMAVNLVH-----------------TVGR--ERAREVLESSFAQFQADRSVVGLSRQ 518
Query: 425 LCK 427
+ K
Sbjct: 519 IAK 521
>gi|270283967|ref|ZP_06193769.1| putative helicase [Bifidobacterium gallicum DSM 20093]
gi|270277807|gb|EFA23661.1| putative helicase [Bifidobacterium gallicum DSM 20093]
Length = 826
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 214/437 (48%), Gaps = 70/437 (16%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + S L + +VLDEVH+L+D RG VWEE+II+ P+ V+I+ LS
Sbjct: 99 IVVMTTEVLRNMLYEHSSTLNALRYVVLDEVHFLADKFRGPVWEEVIIHLPQSVRIVGLS 158
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPL--LDEKGKH 113
ATV+N ++ A WI + G+T+L+ S RPVPL + T+ L L DE G
Sbjct: 159 ATVSNVEDFAKWIASVRGETKLVVSELRPVPLEQHVMIQKDPRTEPELFDLYRFDEDGHQ 218
Query: 114 ---MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170
+N +L + + + +RR FG H+ + S A
Sbjct: 219 TTKINGRLVARLSEFDHRAEQRLEHERPKRRGR--------------FG-HRPNGRSRGA 263
Query: 171 IRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DEC--- 220
+P+ V+D L L +LPAI+FIF+R GCD AV++ + L DE
Sbjct: 264 QAERYIPKRWAVVDELNFL---GLLPAIYFIFSRNGCDEAVEHCLNAGLQLTTDDEARRI 320
Query: 221 -----EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
EM + +L + + L R L +G A HHAG + +++ +E LF+ GL
Sbjct: 321 RQIVDEMIQGQLTHEDLKTLQFSRFR----YALEEGFAPHHAGMVALFRQIVERLFEEGL 376
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
+KVVFATETLA GINMPAR+ VL L K +G + LT E Q+ GRAGRRGID GH
Sbjct: 377 IKVVFATETLALGINMPARSVVLEKLEKYDGTGIVGLTPGEYTQLTGRAGRRGIDTIGHA 436
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
V+V E L V PL S F ++ M +NLL N SD
Sbjct: 437 VVVDYRGFKPETAAALSSKRVYPLHSSFKPTFNMAVNLL---------NSSD-------- 479
Query: 396 RSLEEARKLVEQSFGNY 412
E AR ++ SF +
Sbjct: 480 --YETARTTLDHSFAQW 494
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 732 KEFLRISNVIHETRAL---DINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLK 785
++F RI ++ L D + + L E+ +R E +L LA + N +L DL
Sbjct: 622 RQFDRICTILASLGYLEPADRDGHRDYTLTESGQLLRRLYSERDLLLAEAIDNGVLEDLT 681
Query: 786 PAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR---SSFLELQEKHGV 842
A+LA V +S+V E R Y P V + + E + S L E G+
Sbjct: 682 AAELAGVLSSIVYE---ARRGAGGEPRYYPGGAHGRVADAVTELKLLDSRLNVLCEDAGM 738
Query: 843 --EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
++P LD S +V WASG + E++ D L GD R +R D+L QI
Sbjct: 739 TRDLPM-LDFGISDIVYEWASGDSLAEVLHDSELTGGDFVRNAKRLADVLQQI 790
>gi|418244352|ref|ZP_12870772.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
gi|354511589|gb|EHE84498.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
Length = 929
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 189/368 (51%), Gaps = 41/368 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ + G T +I +
Sbjct: 133 VVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVRGDTRVIVT 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----PYKDG-GSR 139
RPVPL Y + ++PL E G +N++L +L++ + + Y+ G G R
Sbjct: 193 DHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAAYRSGEGFR 251
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ D + L + P+V+ L + +MLPAI FIF
Sbjct: 252 ARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINMLPAITFIF 297
Query: 200 NRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----------IK 246
+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 298 SRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQVLNFKQWRA 351
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL + K
Sbjct: 352 ALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLEKMVKFDG 411
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
G + LT + Q+ GRAGRRGID G+ V+ +P L PL+S F
Sbjct: 412 EGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYPLISTFQPG 471
Query: 367 YGMVLNLL 374
Y M +NLL
Sbjct: 472 YNMSVNLL 479
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 761
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSNPDNPVITDEGERL 767
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 910
GD R R+ IDLL Q+ K +D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYLDETTRNARQAIDA 919
>gi|72162166|ref|YP_289823.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915898|gb|AAZ55800.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 947
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 162/506 (32%), Positives = 239/506 (47%), Gaps = 51/506 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + + L + +V+DEVHYL+D RG VWEE+II+ P+ VQI LSATV+NA+E W
Sbjct: 131 LYAGSATLSGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVQIAALSATVSNAEEFGQW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL---------DEKGKHMNRKLSLNYLQ 124
+ Q+ G T +I +RPVPL + T + L E+ K+ +
Sbjct: 191 LQQVRGDTSVIVDEKRPVPLWQHMMVGTRIHDLFVEPEGTDTGQEEEKNGRGSRKRRRSR 250
Query: 125 LSTSEVKPYKDGGSRRRNSRK---HADMNSNNIVTSFGQ-HQLSKNSINAIR---RSQVP 177
+ + GG R + K A+ ++ ++ + H ++ A R R P
Sbjct: 251 HARQRTVEIEVGGERLHVNPKLIRFAEEDARLTQLAYQRRHPQARARGGAPRPRSRFAPP 310
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRIL 235
+ L +LPAI FIF+R GCD AV+ L+ E +E+ +R
Sbjct: 311 TRAQIVEQLDREGLLPAITFIFSRAGCDEAVRQCVASGLVLTTPEEAAEIREYAERQCAE 370
Query: 236 YPDA-----VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
P A ++ L G+AAHHAG LP +K +E LF RGL++ VFATETLA GIN
Sbjct: 371 IPPADLNVLGYSEWLQALECGIAAHHAGMLPTFKEVVEVLFSRGLIRAVFATETLALGIN 430
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART V+ L K + LT E Q+ GRAGRRGID GH V+V P E
Sbjct: 431 MPARTVVIEKLDKWNGETHVALTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGTDPEMVAG 490
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F SY M +NL+A Q GR E R ++E SF
Sbjct: 491 LAGTRTYPLNSSFQPSYNMAVNLVA-----------------QVGR--ERGRAMLESSFA 531
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
+ ++ + K++ + + L + A D + + A + +++L+ A
Sbjct: 532 QFQADRSVVGL---VRKLRAQQEALEG-YAKAAYDPRGDFMEYAAMRRRLSDLE---SAA 584
Query: 471 KRFRTELRRRMELKRFSALK--DILK 494
+R R RR+ + AL+ DI++
Sbjct: 585 QRNRRTARRKEAERSLRALRTGDIIR 610
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK ++ L +RIE + F R+ V+ E L+ +T + G + I
Sbjct: 735 ERYFRLKKETEELERRIESRSHVIARTFDRVCGVLQELDYLEGDT--VTEDGRLLSRIYS 792
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYE--PSTTVINVIN 824
E +L A LR + L P +LAA ++LV E + ++ PS V +N
Sbjct: 793 ELDLLAAESLRRGVWDALGPEELAACVSALVYES------RRPDEVFARVPSGPVEEALN 846
Query: 825 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 884
+ +++ +H V D F WA G ++ + + GD R +
Sbjct: 847 AMMRLWGELSDIEHRHRVSFLREPDLGFVWPTYRWARGDQLDHILNEAGMPAGDFVRSTK 906
Query: 885 RTIDLLAQI 893
+ IDLL QI
Sbjct: 907 QLIDLLGQI 915
>gi|19552703|ref|NP_600705.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62390371|ref|YP_225773.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|21324257|dbj|BAB98882.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41325708|emb|CAF21497.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
gi|385143613|emb|CCH24652.1| putative helicase [Corynebacterium glutamicum K051]
Length = 929
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 189/368 (51%), Gaps = 41/368 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ + G T +I +
Sbjct: 133 VVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVRGDTRVIVT 192
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----PYKDG-GSR 139
RPVPL Y + ++PL E G +N++L +L++ + + Y+ G G R
Sbjct: 193 DHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAAYRSGEGFR 251
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ D + L + P+V+ L + +MLPAI FIF
Sbjct: 252 ARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINMLPAITFIF 297
Query: 200 NRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----------IK 246
+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 298 SRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQVLNFKQWRA 351
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL + K
Sbjct: 352 ALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLEKMVKFDG 411
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
G + LT + Q+ GRAGRRGID G+ V+ +P L PL+S F
Sbjct: 412 EGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYPLISTFQPG 471
Query: 367 YGMVLNLL 374
Y M +NLL
Sbjct: 472 YNMSVNLL 479
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 14/216 (6%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 761
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSNPDNPVITDEGERL 767
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 910
GD R R+ IDLL Q+ K D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYFDETTRNARQAIDA 919
>gi|333990754|ref|YP_004523368.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601]
gi|333486722|gb|AEF36114.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601]
Length = 928
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 195/403 (48%), Gaps = 57/403 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ EV+++ LSATV+NA+E GWI + G T ++
Sbjct: 135 VVMDEVHFLADRMRGAVWEEVILHLADEVRLVSLSATVSNAEEFGGWIQTVRGDTAVVVD 194
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG----GSRRRN 142
RPVPL + L L E +P DG G R +
Sbjct: 195 EHRPVPLWQHMMVGKRLFDLF---------------------ESRPDTDGQGAAGRPRVD 233
Query: 143 S---RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R A + +T + + + P D + L S +LPAI F+F
Sbjct: 234 PQLLRHIAHRREADRITDWSPRRHGGRGGPGRPSYRPPMRPDVIAVLDSAGLLPAITFVF 293
Query: 200 NRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVREPAI----KGLLKGV 252
+R GCDAAV+ L E E + + E+ R L D + +GLL+G+
Sbjct: 294 SRVGCDAAVKQCLRSPLRLTTESERARIAEVIDHRCGDLADDDLDVLGYYEWREGLLRGL 353
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K L
Sbjct: 354 AGHHAGLLPVFRHTVEELFAAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAAL 413
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA---EECCKLLFAGVEPLVSQFTASYGM 369
T E Q+ GRAGRRGID GH V++ P E E+ L PL S F SY M
Sbjct: 414 TPGEYTQLTGRAGRRGIDVEGHAVVLWHPGESTADPEQVAGLASTRTFPLRSSFAPSYNM 473
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+NL+ Q G E+A +L+EQSF Y
Sbjct: 474 TINLVQ-----------------QMG--PEQAHRLLEQSFAQY 497
>gi|397653961|ref|YP_006494644.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 0102]
gi|393402917|dbj|BAM27409.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 0102]
Length = 918
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 236/470 (50%), Gaps = 75/470 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G TE+I S
Sbjct: 133 VVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGDTEVIVS 192
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYKDGGSRR 140
RPVPL + + PL + + G +N +L + +L E +K GG R
Sbjct: 193 EHRPVPLNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRAQFKAGGFRA 252
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R+S S + + R P+V+D L +S+DMLPAI FIF+
Sbjct: 253 RSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPAITFIFS 297
Query: 201 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA----VREPAIK--------- 246
R GC+ A+ Q + +L + + +E E+A RI+ DA + E +K
Sbjct: 298 RAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIV--DAGVAGIPEEDLKVLDFRKWRS 350
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 ALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNG 410
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F+
Sbjct: 411 EAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPG 470
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS----NVMLAAK 422
Y M +NLL K + + A +L+E+SF + +V+ +
Sbjct: 471 YNMSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVVRNIE 511
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+++K L++ I ++ I++ + E +L+ EL E+R
Sbjct: 512 RSEARVKKLETQLSAHIPEEDIEK----------FVEYIDLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 764
EK+ R + + RL +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSRLRTTVETATDTLGKTFDRILGLLGELDYVEFIDGIPQVTEEGENLAKI 759
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 824
E++L +A L+ I L PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDGLDPAELAGVVSMCTFENRKETRGEPEAATEPMAVAMNNTLR 819
Query: 825 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 877
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 878 DLARLLRRTIDLLAQI 893
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|225352111|ref|ZP_03743134.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157358|gb|EEG70697.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 866
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 244/504 (48%), Gaps = 82/504 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V II LSATV+N ++ + WI + GKT L+ S
Sbjct: 164 VILDEVHYLADRFRGPVWEEVIIHLPKNVNIIGLSATVSNVEDFSEWIESVRGKTTLVMS 223
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
+RPVPL + T+ L+ L D G+ + + +L + + + G
Sbjct: 224 EQRPVPLEQHVLVQADDHTEPELIDLYRRDANGEQTVKLNAQLINRLDQLDRQAERRKGE 283
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAI 195
RR + R+ + G+ + + + R P+ V+D L L DMLP I
Sbjct: 284 RRPDKRR-----------AKGKGGRWDDRPHKVER-HTPRRWAVVDELNFL---DMLPGI 328
Query: 196 WFIFNRRGCDAAVQYLEDCNL----LDEC--------EMSEVELALKRFRILYPDAVREP 243
+FIF+R GCD AV + L DE EM E +L+ + + L+ R
Sbjct: 329 YFIFSRNGCDQAVDQCINAGLELTTSDEVQQIRRIVDEMVEGQLSQEDLKALHFSQFR-- 386
Query: 244 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
L +G A HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 387 --FALEEGFAPHHAGMVALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 444
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 359
+G + LT E Q+ GRAGRRGID GH V+V P A K ++ PL
Sbjct: 445 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFVPATAAALSSKRVY----PL 500
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV-- 417
S F ++ M +NLL N SD E AR ++ SF + +
Sbjct: 501 HSSFRPTFNMAVNLL---------NSSD----------YETARVTLDHSFAQWEANESAW 541
Query: 418 -MLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
+ A + LCK ++ E D + R LS+ E L+ E+ FRT
Sbjct: 542 QLEAQMETLCKALEGYEQAFQCEFGDFKKFMRLRMRLSDLEKNERRKLKHEV-----FRT 596
Query: 476 ELRRR---MEL-KRFSALKDILKD 495
+ R M+L KR L++ +D
Sbjct: 597 QKERSQAFMDLDKRIKKLREEDRD 620
>gi|294628464|ref|ZP_06707024.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
gi|292831797|gb|EFF90146.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
Length = 944
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 204/404 (50%), Gaps = 52/404 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 150 LRGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 209
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D
Sbjct: 210 TQVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGRKKAVNPDLTRMARMEASRPSYQD--- 265
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + I P+VI+ L + +LPAI FI
Sbjct: 266 -RRRGRAMREADRER----------ERRQRSRIWTPSRPEVIE---RLDAEGLLPAITFI 311
Query: 199 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGL 248
F+R C+AAVQ L DE EV ++ P RE ++GL
Sbjct: 312 FSRAACEAAVQQCLYAGLRLNDEEARDEVRALVEERTAAIP---REDLHVLGYYEWLEGL 368
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 369 ERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQ 428
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+T E Q+ GRAGRRGID GH V++ + L PL S F SY
Sbjct: 429 HADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYN 488
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
M +NL+ Q GR +R+L+E SF +
Sbjct: 489 MAVNLVE-----------------QFGR--HRSRELLETSFAQF 513
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL+ +++L RIE + + F RI ++ E LD + + G+ A +
Sbjct: 725 ERYHRLQRDTRQLEHRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 781
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPST 817
GE +L + LR ++ L PA+LAA ++LV E KV K +++ E
Sbjct: 782 GELDLLASECLRERVWEGLGPAELAACVSALVYEARVSDDAMAPKVPSGKAKAALGE--- 838
Query: 818 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
+ + LD F + E G P D F+ W SG E++ + +
Sbjct: 839 -TVRIWGRLDALEEEFRISQTEGVGQREP---DLGFAWAAYEWVSGKGLDEVLREAEMPA 894
Query: 877 GDLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 916
GD R ++ ID+L QI P + + KNA A + + R
Sbjct: 895 GDFVRWCKQVIDVLGQISAAAPTENSTVAKNARKAVDGLLR 935
>gi|410866605|ref|YP_006981216.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823246|gb|AFV89861.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 919
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 191/370 (51%), Gaps = 37/370 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I+ V+++CLSATV+NA+E W+ ++ G ++ S
Sbjct: 127 MVMDEVHYLADRFRGPVWEEVILGLADSVRLVCLSATVSNAEEFGEWLDEVRGDIRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 144
RRPVPLT + + ++ L D G +N L Q + S+ + R R
Sbjct: 187 ERRPVPLTQHVALAKRIVDLFAPDRPGT-VNPDLLQVARQEARSQRDDGRRPRGRSGKGR 245
Query: 145 KHADMNSNNIVTSFGQ------HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ S + Q H+ +NS + RSQV + LR +LPAI F+
Sbjct: 246 RTVSYGSGRFGGASAQRFERDDHRAPRNSPS---RSQVVRA------LRRAHLLPAIIFV 296
Query: 199 FNRRGCDAAVQYLEDCNLL----DE----CEMSEVELALKRFRILYPDAVREPA-----I 245
F+R+GCDAAV L +++ +E CE++E R DA R +
Sbjct: 297 FSRQGCDAAVSQLMSSDVVLTSTEEARRLCEIAE------RHGAALTDAERRALGWDRFV 350
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+GVAAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART V+ L K
Sbjct: 351 SAFERGVAAHHAGLLPVVKAVVEEGFVNGLLKVVVATETLALGINMPARTVVIERLVKYN 410
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+T E Q+ GRAGRRGID GH V+ P L PL S FT
Sbjct: 411 GQTHADITPGEYTQLTGRAGRRGIDVEGHAVVCWQPGMDPRAVAGLASRRTYPLRSAFTP 470
Query: 366 SYGMVLNLLA 375
+Y M +NL+
Sbjct: 471 TYNMAVNLVG 480
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 734 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 793
F RI V+ L+ + G + I E +L A + +L L PAQLAAV
Sbjct: 730 FDRICLVLEALGYLEPGGLRVSDSGRVLSRIYSELDLVTAEAIAEGVLDGLDPAQLAAVL 789
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS 853
++L+ E + ++ + P ++ L R+ L+ H +E P LD+ F+
Sbjct: 790 STLIFES-RPADRRHQYGHWLPDPACEESVSRLRAVRARVGRLERDHRLERPRDLDTGFA 848
Query: 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 905
+ WASG + +++ GD R +R+ DL QI VD+ L +
Sbjct: 849 EIAYQWASGAAL-DTVLEEGSSAGDFVRQMRQLADLAGQIAGA-GVDEELAR 898
>gi|398788653|ref|ZP_10550789.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
gi|396991972|gb|EJJ03091.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
Length = 938
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 158/444 (35%), Positives = 224/444 (50%), Gaps = 34/444 (7%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W
Sbjct: 134 LYAGSQSLVGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK-GKHMNRKLSLNYLQLSTSEVKP 132
+ + G TE+I S RPVPL + + L +E+ G+ R+ EV P
Sbjct: 194 LDTVRGDTEVIVSEHRPVPLWQHVLAGRRIYDLFEERDGQSGGRR-----------EVNP 242
Query: 133 YKDGGSRRRNSRKHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+ +R NSR + T + + + I P+VID L + +
Sbjct: 243 DLERLARMENSRPTFGRDKRRGRTMREADRERERRQRSRIWTPSRPEVID---RLDNEGL 299
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEV--ELALKRFRILYPDAVREPA---- 244
LPAI FIF+R C+AAVQ L L++ E E + R + D +
Sbjct: 300 LPAITFIFSRAACEAAVQQCLYSGLRLNDQEGREQVRRIVEARTAGIADDDLHVLGYFEW 359
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++GL +G+AAHHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L K
Sbjct: 360 LEGLERGIAAHHAGMLPTFKEVVEELFVKGLVKAVFATETLALGINMPARSVVLEKLVKW 419
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQ 362
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 420 NGEQHADITPGEYTQLTGRAGRRGIDIEGHAVVLWQ--RGMDPGAVAGLAGTRTYPLRSS 477
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMK--ALQAGRSLEEARKLV---EQSFGNYVGS-N 416
F SY M +NL++ H S E +M QA +S+ + V E+ Y GS
Sbjct: 478 FKPSYNMAVNLVSQFG-HHRSRELLEMSFAQFQADKSVVGISRQVQKNEEGLAGYRGSMT 536
Query: 417 VMLAAKDELCKIQKETDVLTSEIS 440
L +E ++++E +E++
Sbjct: 537 CHLGDFEEYSRLRRELKDRETELA 560
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 10/192 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL +++L +RIE + + F RI ++ E L+ ++ + G A + G
Sbjct: 720 ERYHRLLRDTRQLERRIEGRTNTIARTFDRICALLTELGYLEGDS--VTDEGRRLARLYG 777
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L + LR + L PA+LAA ++LV E R + + P+ + +
Sbjct: 778 ELDLLASECLREGVWEGLGPAELAACASALVYE---ARQADDAVAPKLPAGQAREALGEM 834
Query: 827 DEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
L+E H + + D F+ WASG E++ D + GD R
Sbjct: 835 VRIWGRLDALEEDHRINQAEGVGQREPDLGFAWAAYRWASGFGLDEVLRDAEMPAGDFVR 894
Query: 882 LLRRTIDLLAQI 893
++ ID+L QI
Sbjct: 895 WCKQLIDVLGQI 906
>gi|444433419|ref|ZP_21228560.1| putative helicase [Gordonia soli NBRC 108243]
gi|443885804|dbj|GAC70281.1| putative helicase [Gordonia soli NBRC 108243]
Length = 987
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/432 (35%), Positives = 215/432 (49%), Gaps = 49/432 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T +I
Sbjct: 150 VVMDEVHFLADRFRGAVWEEVILHLAPSVRVVSLSATVSNAEEFGDWIQTVRGDTAVIVD 209
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL+ + L L + R +N E+K Y R+
Sbjct: 210 EHRPVPLSQHMLVGNRLFDLFEPPTGGTGRP-GVN------PELKRYI------RHRILT 256
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
D S N + + + R ++ P D + L +LPAI FIF+R GCD
Sbjct: 257 TDDGSGNDRGRGQRGRSGGPARRGGRGNRPPSRPDVVARLDRDGLLPAIAFIFSRAGCDG 316
Query: 207 AV-QYLED-CNLLDECEMSEVELALKRF---------RILYPDAVREPAIKGLLKGVAAH 255
A+ Q L +LL E + V++ + R IL DA R GL +G+AAH
Sbjct: 317 ALTQCLRSGLSLLTPEESAAVDVVVDRHLADLSPADEDILGVDAWR----AGLRRGLAAH 372
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF GLVKVVFATETLA GINMPAR+ VL L K + LT
Sbjct: 373 HAGLLPTFRHAVEELFVNGLVKVVFATETLALGINMPARSVVLERLVKFNGEAHVDLTPG 432
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V+V TP ++ L A PL S F Y M +NL+
Sbjct: 433 EFTQLTGRAGRRGIDVEGHAVVVWTPELVPDQVAGLAGARTFPLRSSFAPEYNMAVNLI- 491
Query: 376 GAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 434
GR L +R+L+++SF + ++ ++ + ++
Sbjct: 492 -------------------GRVGLAGSRELLDRSFAQFQADRSVVGQARKVDEARRALRK 532
Query: 435 LTSEISDDAIDR 446
L E+++ AI R
Sbjct: 533 LDVELANAAIRR 544
>gi|375101143|ref|ZP_09747406.1| superfamily II RNA helicase [Saccharomonospora cyanea NA-134]
gi|374661875|gb|EHR61753.1| superfamily II RNA helicase [Saccharomonospora cyanea NA-134]
Length = 918
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 210/425 (49%), Gaps = 61/425 (14%)
Query: 4 RIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
+IVV + V + ++ + L D+ +V+DEVHYL+D RG VWEE+I++ P V+++ L
Sbjct: 122 QIVVMTTEVLRNMLYANSAALDDLGYVVMDEVHYLADRFRGAVWEEVILHLPAYVRVVGL 181
Query: 61 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 120
SATV+NA+E W+ ++ G T ++ RPVPL + +L L
Sbjct: 182 SATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMFVGGRMLDLFAADAADTGEA--- 238
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+L+ ++ +D +R HA + + + R + P
Sbjct: 239 ---KLNPQLLRRVED------TARMHAPAGLRG--------RGRRGAPYRGPRYRPPSRT 281
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDA 239
+ + L + +LPAI FIF+R GCDAAV Q + L+ E EVE + RI+
Sbjct: 282 EVVDRLDAAGLLPAIVFIFSRAGCDAAVAQCVRSGLRLNTPE--EVE---QVRRIVDERT 336
Query: 240 VREP----AIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
P A+ G L +G+AAHHAG LP +K +EELF RGLVKVVFATETLA G
Sbjct: 337 ADLPQNDLAVLGYWEWREALEQGIAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALG 396
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348
INMPART VL L K + LT E Q+ GRAGRRGID GH V+V P +
Sbjct: 397 INMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQV 456
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQ 407
L PL S F Y M +NL+ GR +AR+L+EQ
Sbjct: 457 AGLASTRTYPLRSSFRPGYNMAVNLV--------------------GRFGSAKARELLEQ 496
Query: 408 SFGNY 412
SF +
Sbjct: 497 SFAQF 501
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+A +++L +++ S + F RI ++ E LD + G A +
Sbjct: 700 ERYLRLEAETEQLKRKVAATTHSLARAFDRIRGLLSERGYLDDGGDTVTEHGRLLARLYS 759
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARR----DSPAESKLPSGPVSEAWQET 815
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 881
+ ++ + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAEVNGQELSAGDFVR 875
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIKDVLGREHPVGGAAGKASRLLRR 910
>gi|422579216|ref|ZP_16654739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314914924|gb|EFS78755.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
Length = 917
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 194/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ + G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEGRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422486206|ref|ZP_16562562.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443881|gb|EGE90535.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 917
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 194/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ + G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEGRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPVPL + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTSGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|456385877|gb|EMF51430.1| helY protein [Streptomyces bottropensis ATCC 25435]
Length = 949
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 204/401 (50%), Gaps = 46/401 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D
Sbjct: 216 TDVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGNKKAVNPDLTRMARMEASRPSYQD--- 271
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + I P+VI+ L S +LPAI FI
Sbjct: 272 -RRRGRSMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFI 317
Query: 199 FNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA----IKGLLKG 251
F+R C+AAVQ L DE + L +R + + + ++GL +G
Sbjct: 318 FSRAACEAAVQQCLYAGLRLNDDESRLKVRALVEERTASIPNEDLHVLGYYEWLEGLERG 377
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 378 IAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHAD 437
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
+T E Q+ GRAGRRGID GH V++ + L PL S F SY M +
Sbjct: 438 ITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYNMAV 497
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
NL+ Q GR +R+L+E SF +
Sbjct: 498 NLVE-----------------QFGR--HRSRELLETSFAQF 519
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYYRLKRDTAQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLGPAELAACVSALVYE---ARAADDAMAPKLPSGNAKAALGEM 845
Query: 820 INVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F Q E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEEFRITQSEGVGQREP---DLGFAWAAYMWASGSGLDEVLREVEMPAGD 902
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID+L QI + KNA A + + R
Sbjct: 903 FVRWCKQVIDVLGQISAAAPSGSSVGKNARKAVDGLLR 940
>gi|377563327|ref|ZP_09792678.1| putative helicase [Gordonia sputi NBRC 100414]
gi|377529575|dbj|GAB37843.1| putative helicase [Gordonia sputi NBRC 100414]
Length = 934
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 208/430 (48%), Gaps = 55/430 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI + G+ +I
Sbjct: 130 VVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIQTVRGEVTVIVD 189
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR-- 144
RPVPL + + L L D ++DGG + N
Sbjct: 190 EHRPVPLQQHMLVGSRLFDLFDS-----------------------HRDGGKPQVNPELK 226
Query: 145 ---KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT---LWHLRSRDMLPAIWFI 198
+H + ++ + G + S R + P + + L +LPAI FI
Sbjct: 227 RYIRHRMLLADERDSGRGHDRRSGRGRPRSTRGRGPGALSRPQLVARLDREGLLPAIGFI 286
Query: 199 FNRRGCDAAVQYL----------EDCNLLDEC-EMSEVELALKRFRILYPDAVREPAIKG 247
F+R GCDAA+ E+ + +DE + E+A +L D R G
Sbjct: 287 FSRVGCDAALAQCLRSGLSLLTPEESSAVDEVIDRHLTEIAPGDADVLGVDEWR----AG 342
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L +G AAHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 343 LQRGFAAHHAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKFNGE 402
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
+ LT E Q+ GRAGRRGID GH V+V TP E+ L A PL S F Y
Sbjct: 403 SHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTFPLRSSFAPEY 462
Query: 368 GMVLNL-----LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
M +NL LAG++ L N S QA RS+ + V+ + +V LA
Sbjct: 463 NMAVNLIGRRGLAGSR--ELLNRS--FAQFQADRSVVGQSRKVDDMYRRLRKLDVELAGA 518
Query: 423 DELCKIQKET 432
+ I+ T
Sbjct: 519 ADKRGIEPGT 528
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 753 VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNS-- 810
V+ P G+ + I E++L + +R I L P QLAAV A++V E + ++
Sbjct: 760 VVTPTGQLLSRIYSESDLLVTECIRAGIWDRLGPPQLAAVIAAMVFESRRDSHAGADAMP 819
Query: 811 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM 870
E T + +++ +++ +HGV D+ FS V WASG + E +
Sbjct: 820 GNVELRTAIAATLDIW----CQVTDVERRHGVSPTREPDTGFSVAVSLWASGRSLTESLA 875
Query: 871 DCA-----LDDGDLARLLRRTIDLLAQI 893
L GD R R+ +DLL Q+
Sbjct: 876 AAGERGTLLSPGDFVRWNRQVVDLLEQV 903
>gi|334337044|ref|YP_004542196.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107412|gb|AEG44302.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 960
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 210/443 (47%), Gaps = 73/443 (16%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG VWEE+II+ P VQ++ LS
Sbjct: 127 VVVMTTEVLRNMLYAGSSTLDGLAYVVMDEVHYLADRFRGPVWEEVIIHLPDHVQLVSLS 186
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ S RRPVPL W ++ P +
Sbjct: 187 ATVSNAEEFGDWLEMVRGDTAVVVSERRPVPL-WQHVIVSSAEP-----------RGVPR 234
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR-------- 173
L V P G + N HA ++ + + R
Sbjct: 235 LFDLYAGHVDPTDPGTNPPINPDLHAVFRTHGRSDGGARGGRGGHRGKGDRGYRGRGPGR 294
Query: 174 -----SQVPQ--------VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC 220
S VPQ V+D L +LPAI+FIF+R GC+ AV E C L
Sbjct: 295 AAGGASLVPQRRTPPRFAVVDAL---DGEGLLPAIYFIFSRAGCEGAV---EQC-LHSGL 347
Query: 221 EMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEE 269
++ E + R++ PA + L +G+AAHHAG LP++K +EE
Sbjct: 348 RLTNAEEEAEIRRVVEQRTATIPAEDLEVLGYWTWQQSLARGIAAHHAGLLPVFKETVEE 407
Query: 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329
LF RGL+KVVFATETLA GINMPAR+ VL L K + +T E Q+ GRAGRRGI
Sbjct: 408 LFARGLLKVVFATETLALGINMPARSVVLEKLVKWDGTAHQPVTPGEYTQLTGRAGRRGI 467
Query: 330 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 389
D GH V+V P L + PL S F +Y M +NL+A
Sbjct: 468 DVEGHAVVVDHPGLDPVALAGLASKRLYPLRSSFRPTYNMAVNLVA-------------- 513
Query: 390 KALQAGRSLEEARKLVEQSFGNY 412
Q GR + AR+++E SF +
Sbjct: 514 ---QVGR--DRAREVLETSFAQF 531
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 765
E+ +RLK L +R+E S + F R V+ L+ + + + +R
Sbjct: 742 ERWERLKREHDTLVRRVEGRTGSIARTFDRTCEVLVTLGYLEPAERAGLRVTDDGRWLRR 801
Query: 766 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
EN+L LA LR L PA LAA +++V G + + Y P +
Sbjct: 802 LYAENDLLLAECLRRGTWDGLGPADLAAAVSTVVYSGRR----EEPVEPYVPGGPAGRLA 857
Query: 824 NVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ LDE S +L+ +H +E+ LD V WASG ++ + GD
Sbjct: 858 HALDETVRVWSQVTDLESEHRLEVTGPLDLGLVAPVHRWASGKGLDAVLRGTDVAAGDFV 917
Query: 881 RLLRRTIDLLAQI 893
R ++ +D+L Q+
Sbjct: 918 RWCKQVVDVLDQL 930
>gi|410320|gb|AAA35049.1| antiviral protein [Saccharomyces cerevisiae]
Length = 1286
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 207/382 (54%), Gaps = 34/382 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYK----- 134
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 135 ---------------DG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
DG G R ++R A+ + + G ++ + + + P+
Sbjct: 557 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 616
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 617 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E F +AGRAGRRG+D+ G V+++ + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGE-FTLAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 792
Query: 354 AGVEP-LVSQFTASYGMVLNLL 374
GV L SQF +Y M+LNLL
Sbjct: 793 MGVPTRLQSQFRLTYNMILNLL 814
>gi|290961699|ref|YP_003492881.1| helicase [Streptomyces scabiei 87.22]
gi|260651225|emb|CBG74347.1| putative helicase [Streptomyces scabiei 87.22]
Length = 949
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 204/402 (50%), Gaps = 48/402 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 156 LLGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGD 215
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGS 138
T++I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D
Sbjct: 216 TDVIVSEHRPVPLFQHVLAGRRMYDLFEE-GEGNRKAVNPDLTRMARMEASRPSYQD--- 271
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR R + + + + I P+VI+ L S +LPAI FI
Sbjct: 272 -RRRGRAMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFI 317
Query: 199 FNRRGCDAAVQYL--------EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
F+R C+AAVQ +D N L + E A L+ E ++GL +
Sbjct: 318 FSRAACEAAVQQCLYAGLRLNDDENRLKVRALVEERTASIPHEDLHVLGYYE-WLEGLER 376
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 377 GIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHA 436
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
+T E Q+ GRAGRRGID GH V++ + L PL S F SY M
Sbjct: 437 DITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGLSPDHLAGLAGTRTYPLRSSFKPSYNMA 496
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+NL+ Q GR +R+L+E SF +
Sbjct: 497 VNLVE-----------------QFGR--HRSRELLETSFAQF 519
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYYRLKRDTAQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 819
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLGPAELAACVSALVYE---ARAADDAMAPKLPSGNAKAALGEM 845
Query: 820 INVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ + LD F Q E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEEFRITQSEGVGQREP---DLGFAWAAYMWASGSGLDEVLREVEMPAGD 902
Query: 879 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID+L QI + KNA A + + R
Sbjct: 903 FVRWCKQVIDVLGQISAAAPAGSSVGKNARKAVDELLR 940
>gi|119025836|ref|YP_909681.1| helicase [Bifidobacterium adolescentis ATCC 15703]
gi|118765420|dbj|BAF39599.1| probable helicase [Bifidobacterium adolescentis ATCC 15703]
Length = 882
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 172/534 (32%), Positives = 242/534 (45%), Gaps = 74/534 (13%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S D + ++LDEVHYL+D RG VWEE+II+ P+ V+II LS
Sbjct: 155 IVVMTTEVLRNMLYEHSMTLDALRYVILDEVHYLADRFRGPVWEEVIIHLPQSVRIIGLS 214
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH 113
ATV+N ++ + WI + G T L+ S +RPVPL + T+ L+ L D+ G
Sbjct: 215 ATVSNVEDFSKWIESVRGDTTLVVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQ 274
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
++ + +L + K K G +R + RK N H R
Sbjct: 275 TDKLNAQLVSRLDQLDRKAAKRRGEQRPDRRKGGKGGKWN------DHSRRPERHTPRRW 328
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DEC--------E 221
+ VID L L +LP I+FIF+R GCD AV+ + L DE E
Sbjct: 329 A----VIDELNFL---GILPGIYFIFSRNGCDQAVEQCINAGLELTTDDEVRRIRRIVDE 381
Query: 222 MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
M E +L+ + + L+ R L +G A HHAG + +++ +E LF+ GLVKVVFA
Sbjct: 382 MVEGQLSQEDLKALHFSQFR----FALEEGFAPHHAGMVALFRQIVERLFEEGLVKVVFA 437
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPAR V+ L K +G + LT E Q+ GRAGRRGID GH V+V
Sbjct: 438 TETLALGINMPARCVVVEKLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHH 497
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
L V PL S F ++ M +NLL N SD E A
Sbjct: 498 GFIPATAAALSSKRVYPLHSSFKPTFNMAVNLL---------NSSD----------YETA 538
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETD----VLTSEISD-----------DAIDR 446
R ++ SF + + + ++ ++K D E D +++
Sbjct: 539 RITLDHSFAQWEANESAWQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLRMRLSDLEK 598
Query: 447 KSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 500
RR L ++ E K R ELR + DI K + GH
Sbjct: 599 NERRKLKHEVFRTQKARSEAFKDLDRSIAELREKDRDHPCRKCPDIQKHLKWGH 652
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 41/320 (12%)
Query: 606 ETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN---VPVLSSLSESDEVLHMS 662
ET + LD WE + W +E ++T +L+ + E + +
Sbjct: 536 ETARITLDHSFAQWEANESA-----WQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLR 590
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI---------KRLK 713
D +E + ++ K + + AR+E FK+ + + ++ + K LK
Sbjct: 591 MRLSD-LEKNERRKLKHEVFRTQKARSEAFKDLDRSIAELREKDRDHPCRKCPDIQKHLK 649
Query: 714 -----ARS----KRLTKRIEQIEPSGWKEFLRISNVIHETRALD-----INTQVIFPLGE 759
AR +R+ R + S ++F RI NV++E LD + + L E
Sbjct: 650 WGHRWAREMRELERVQHRYDSRTGSVARQFDRICNVLNELGYLDRLDEGAKEHIDYRLTE 709
Query: 760 TAAAIR---GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
+R E +L LA + + L +LA+ SL+ E R + P
Sbjct: 710 RGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMSLIYE---PRRGSGGEPRHYPG 766
Query: 817 TTVINVINV---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
NV L +S L E + ++ P LD + +V WA G + ++
Sbjct: 767 GMQGNVAVCAAQLKGVHASIAMLCEDYALDEPRQLDFGITDVVYEWAQGESLSRVLYGTD 826
Query: 874 LDDGDLARLLRRTIDLLAQI 893
L GD R +R D+L QI
Sbjct: 827 LTGGDFVRGCKRLADVLQQI 846
>gi|23465319|ref|NP_695922.1| helicase [Bifidobacterium longum NCC2705]
gi|23325959|gb|AAN24558.1| probable helicase [Bifidobacterium longum NCC2705]
Length = 863
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 209/415 (50%), Gaps = 70/415 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGS 138
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQLDRKAARRRGE 277
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQ---VIDTLWHLRSRDMLP 193
R + RK FG+ + K + +++ P+ V+D L L MLP
Sbjct: 278 ERPDKRK-----------GFGRDRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GMLP 323
Query: 194 AIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVR 241
I+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 324 GIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKFR 383
Query: 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L
Sbjct: 384 ----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKL 439
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVE 357
K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 440 EKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY---- 495
Query: 358 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|334563714|ref|ZP_08516705.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 924
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 211/443 (47%), Gaps = 77/443 (17%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ S S D + +V+DEVH+L+D SRG VWEE I+ V ++ LS
Sbjct: 134 VVVMTTEVLRNMIYSGSPRLDSLTHVVMDEVHFLADRSRGPVWEEAILTLDPRVLLVSLS 193
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GW+ + G T+++ ++ RPVPL + T +LPL +
Sbjct: 194 ATVSNAEEFGGWLRTVRGDTDIVVTTHRPVPLHQHLMVGTRVLPLFTGDTDDLGAVNRAA 253
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+T+E K G RRR +++ D
Sbjct: 254 VAAAATAE----KQG--RRRGTKRS----------------------------------D 273
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP--DA 239
+ LR MLPAI+FIF+R GCD AV+ L L+D ++ E + R + D
Sbjct: 274 AVMRLRGDGMLPAIYFIFSRAGCDGAVRQL----LVDRIDLVTPEQREEILRTVDAGVDG 329
Query: 240 VREPAI---------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
+ + + L G AAHHAG LP ++ +E+LF RGLVKV FATETLA GIN
Sbjct: 330 IGREDLGILGFRQWRRALSHGFAAHHAGMLPAFRHIVEDLFSRGLVKVCFATETLALGIN 389
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPAR+ VL L K + LT + Q+ GRAGRRG D GH V++ +P
Sbjct: 390 MPARSVVLEKLVKYNGEAHVDLTPAQYTQLTGRAGRRGTDTVGHAVVLWSPGMDPYAVAD 449
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
L PL S F Y M +NL+ A + ++A +++E+SF
Sbjct: 450 LASTRSYPLDSTFRPGYNMAVNLI-------------------ATKGYDDAHRILERSFA 490
Query: 411 NYVGSNVMLAAKDELCKIQKETD 433
Y ++ +++ + +++ D
Sbjct: 491 QYQIDGTVVERAEQVERRRRDLD 513
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 712 LKARSKRLTKRIEQIEPSG---WKEFLRISNVIHETRALD---INTQVIFPLGETAAAIR 765
LKAR +RL + + P + F RI +++ E +D +T V G+ A +
Sbjct: 706 LKAR-RRLDHELGEAGPDADTLGRTFDRILDLLRELDYVDGRGPDTAVTVE-GQRLARVH 763
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI-N 824
E++L +A LR + L PA+LAA ++ V E I+ + + P+ + + +
Sbjct: 764 HESDLLVAQCLRRGVWDHLDPAELAAAVSTCVFE-IRREVPVAGAGPGLPTEPLTAAVED 822
Query: 825 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALDDGDL 879
V+ HR +E+H + + + F+ + W +G + + GD
Sbjct: 823 VIRIHR-ELTSDEERHRLPVTRPPEPAFAAALHQWTAGAPLDYCLRAAEAAGAPMTPGDF 881
Query: 880 ARLLRRTIDLLAQI 893
R RR DLL+QI
Sbjct: 882 VRWCRRVTDLLSQI 895
>gi|113678409|ref|NP_001038366.1| helicase SKI2W [Danio rerio]
gi|94733402|emb|CAK04564.1| novel protein similar to vertebrate superkiller viralicidic
activity 2-like 2 (S. cerevisiae) (SKIV2L2) [Danio
rerio]
Length = 1230
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 186/365 (50%), Gaps = 51/365 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E + WIG+I +
Sbjct: 424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHI 483
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y STKT L LLD G + + Y
Sbjct: 484 YVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGY--------------YAA 529
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ + KHA SFG +S+++ A +R Q P +
Sbjct: 530 VEAKKERTSKHAQ--------SFGTKNVSQHNTTASQRQQTP----------------VV 565
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK- 250
F F+R CD + L +L E SE+ L++ R+ P I + LLK
Sbjct: 566 AFTFSRTRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKR 625
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 626 GIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFR 685
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V +L + E ++ L SQF +Y M
Sbjct: 686 NLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTM 745
Query: 370 VLNLL 374
+LNLL
Sbjct: 746 ILNLL 750
>gi|154487327|ref|ZP_02028734.1| hypothetical protein BIFADO_01176 [Bifidobacterium adolescentis
L2-32]
gi|154083845|gb|EDN82890.1| DEAD/DEAH box helicase [Bifidobacterium adolescentis L2-32]
Length = 849
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 247/518 (47%), Gaps = 64/518 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ S D + ++LDEVHYL+D RG VWEE+II+ P+ V+II LS
Sbjct: 122 IVVMTTEVLRNMLYEHSMTLDALRYVILDEVHYLADRFRGPVWEEVIIHLPQSVRIIGLS 181
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH 113
ATV+N ++ + WI + G T L+ S +RPVPL + T+ L+ L D+ G
Sbjct: 182 ATVSNVEDFSKWIESVRGDTTLVVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQ 241
Query: 114 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
++ + +L + K K G +R + RK N H R
Sbjct: 242 TDKLNAQLVSRLDQLDRKAAKRRGEQRPDRRKGGKGGKWN------DHSRRPERHTPRRW 295
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DEC--------E 221
+ VID L L +LP I+FIF+R GCD AV+ + L DE E
Sbjct: 296 A----VIDELNFL---GILPGIYFIFSRNGCDQAVEQCINAGLELTTDDEVRRIRRIVDE 348
Query: 222 MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 281
M E +L+ + + L+ R L +G A HHAG + +++ +E LF+ GLVKVVFA
Sbjct: 349 MVEGQLSQEDLKALHFSQFR----FALEEGFAPHHAGMVALFRQIVERLFEEGLVKVVFA 404
Query: 282 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
TETLA GINMPAR V+ L K +G + LT E Q+ GRAGRRGID GH V+V
Sbjct: 405 TETLALGINMPARCVVVEKLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHH 464
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 401
L V PL S F ++ M +NLL N SD E A
Sbjct: 465 GFIPATAAALSSKRVYPLHSSFKPTFNMAVNLL---------NSSD----------YETA 505
Query: 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETD----VLTSEISDDAIDRKSRRLLSEAAY 457
R ++ SF + + + ++ ++K D E D + R LS+
Sbjct: 506 RITLDHSFAQWEANESAWQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLRMRLSDLEK 565
Query: 458 KEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKD 495
E L+ E+ ++ R+E + ++ +R + L++ +D
Sbjct: 566 NERRKLKHEVFRTQKARSEAFKDLD-RRIAELREKDRD 602
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 41/320 (12%)
Query: 606 ETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN---VPVLSSLSESDEVLHMS 662
ET + LD WE + W +E ++T +L+ + E + +
Sbjct: 503 ETARITLDHSFAQWEANESA-----WQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLR 557
Query: 663 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK---------IKRLK 713
D +E + ++ K + + AR+E FK+ + + ++ + K LK
Sbjct: 558 MRLSD-LEKNERRKLKHEVFRTQKARSEAFKDLDRRIAELREKDRDHPCRKCPDIQKHLK 616
Query: 714 -----ARS----KRLTKRIEQIEPSGWKEFLRISNVIHETRALD-----INTQVIFPLGE 759
AR +R+ R + S ++F RI NV++E LD + + L E
Sbjct: 617 WGHRWAREMRELERVQHRYDSRTGSVARQFDRICNVLNELGYLDRLDEGAKEHIDYRLTE 676
Query: 760 TAAAIR---GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
+R E +L LA + + L +LA+ SL+ E R + P
Sbjct: 677 RGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMSLIYE---PRRGSGGEPRHYPG 733
Query: 817 TTVINVINV---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
NV L +S L E + ++ P LD + +V WA G + ++
Sbjct: 734 GMQGNVAVCAAQLKGVHASIAMLCEDYALDEPRQLDFGITDVVYEWAQGESLSRVLYGTD 793
Query: 874 LDDGDLARLLRRTIDLLAQI 893
L GD R +R D+L QI
Sbjct: 794 LTGGDFVRGCKRLADVLQQI 813
>gi|47208140|emb|CAF92300.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1120
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 192/368 (52%), Gaps = 44/368 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I +
Sbjct: 303 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI 362
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T+ + L+D G +N+ Y
Sbjct: 363 YVISTMKRPVPLEHYLYTGNSSKTQKEMFLLVDAAGNFLNKAY--------------YAA 408
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPA 194
+++ S KH+ SFG S+N+ + R+ V TL H L +R P
Sbjct: 409 VDAKKERSSKHSQ--------SFGTKNTSQNTTASQDRA----VWLTLLHYLSARQQTPV 456
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK 250
+ F F+R CD + L+ +L E +E+ + +L R R + ++ LLK
Sbjct: 457 VAFTFSRTRCDENARSLDSMDLTTSIEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLK 516
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
G+A HH+G LPI K E LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 517 RGIAVHHSGILPILKEVTEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGF 576
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTAS 366
L E QMAGRAGRRG+D G V+++ G +E L + L SQF +
Sbjct: 577 RNLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVQEMADLHVMMMGKPTVLHSQFRLT 634
Query: 367 YGMVLNLL 374
Y M+LNLL
Sbjct: 635 YTMILNLL 642
>gi|158316630|ref|YP_001509138.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158112035|gb|ABW14232.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 990
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 210/466 (45%), Gaps = 72/466 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E A W+ + G T +I S
Sbjct: 133 VVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVS 192
Query: 87 SRRPVPLTWYFSTKTAL--------------LPLLDEKGKHMN-RKLSLNYLQLSTSEVK 131
RPVPL + L +P +G N R + + +T +
Sbjct: 193 EHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVPAFSRRGPGPNGRGAAPGSVGGATPGSR 252
Query: 132 PYKDGGSR-------------------------RRNSRKHADMNSNNIVTSFGQHQLSKN 166
P R SR + + G+
Sbjct: 253 PGARAAEARAGDIAGAGAAAGGRAVNPDLLRLAREESRAVYERGRGPRSSRPGRPGAGNG 312
Query: 167 SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSE 224
+ N RRS P D + L +LPAI F+F+R GCDAAV L E E
Sbjct: 313 AGNGRRRSGPPNRPDVIVRLDRAGLLPAILFVFSRVGCDAAVASCIQAGLRLTSPDEQRE 372
Query: 225 VELALKRFRILYPDAVREPAI-------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 277
+ ++ P A + A+ +GL +G+AAHHAG LP +K +EELF RGLV+
Sbjct: 373 IREHVRARTAGVPQA--DLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVR 430
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
VFATETLA GINMPART VL L+K R +T E Q+ GRAGRRGID GH V+
Sbjct: 431 AVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVV 490
Query: 338 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR- 396
+ P L PL S F SY M +NL+ GR
Sbjct: 491 LWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLV--------------------GRL 530
Query: 397 SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 442
E AR ++E SF + ++ + + Q + LT+ + D
Sbjct: 531 GAERARTVLESSFAQFQADKAVVGIARAVRRNQTAIEELTAALECD 576
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 764
+ E+I RL+ + L +++E + + F R+ + + E L + + G A I
Sbjct: 747 SAERIDRLRRETAGLERKVEGRTNTVARTFDRVRDTLAELGYLAVGGDSVTDAGAMLARI 806
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTVI 820
E +L +A LR + L P LAA ++LV E I ++ + +
Sbjct: 807 YTEQDLQVAECLRTGVWEGLTPPALAAAVSTLVFEPRGDDIAAPTIPGGGALRDALADMA 866
Query: 821 NVINVL----DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD- 875
V L D HR FL D F + WA G +++ D D
Sbjct: 867 GVYTRLGAAEDHHRLGFLRPP-----------DLGFVAVAHGWACGRGLEKVLEDAGADL 915
Query: 876 -DGDLARLLRRTIDLLAQIPKLPDV 899
GD R +R+ IDLL QI ++ V
Sbjct: 916 TAGDFVRWMRQLIDLLDQIAQVAPV 940
>gi|424853393|ref|ZP_18277770.1| ATP-dependent helicase [Rhodococcus opacus PD630]
gi|356665316|gb|EHI45398.1| ATP-dependent helicase [Rhodococcus opacus PD630]
Length = 911
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 232/478 (48%), Gaps = 54/478 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LS
Sbjct: 109 VVVMTTEVLRNMLYADSPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ RP+PL + L L D + + + +L
Sbjct: 169 ATVSNAEEFGAWMETVRGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALK 225
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L + V+ K +R + + AD + G + N + R P+VI
Sbjct: 226 DLVVDQDLVRHVK-----QRQALERADSWESRGRGRRGGGRGFSNDFRPLPR---PEVIS 277
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 239
L +LPAI FIF+R GCDAA+ Q L +L +++E+ + P A
Sbjct: 278 ---RLDDEGLLPAITFIFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKA 334
Query: 240 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
E K L +G+AAHHAG LP ++ +EELF +GL++ VFATETLA GINMPAR
Sbjct: 335 DLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEELFVKGLIRAVFATETLALGINMPAR 394
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 395 TVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLAST 454
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F Y M +NL+ D M A E+R L+E+SF +
Sbjct: 455 RTFPLRSSFRPGYNMTINLV------------DRMGA-------AESRALLERSFAQFQA 495
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + + L + + + Y E A L+EEL + +R
Sbjct: 496 DRSVVGLTRGIERNEAALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|432881492|ref|XP_004073809.1| PREDICTED: helicase SKI2W-like isoform 1 [Oryzias latipes]
Length = 1246
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 191/368 (51%), Gaps = 44/368 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I K
Sbjct: 424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHI 483
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + STKT + L+D G + + Y
Sbjct: 484 YVISTMKRPVPLEHHLYTGNSTKTQKEMFLLVDAAGNFLTKGY--------------YAA 529
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPA 194
+++ S KHA +FG S+N+ + RS V L H L R P
Sbjct: 530 VDAKKERSSKHAQ--------TFGAKNTSQNTTASQDRS----VWLALLHFLSQRQQTPV 577
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK 250
+ F F+R CD + LE +L E +E+ + +L R R + ++ LLK
Sbjct: 578 VAFTFSRARCDDNARSLESMDLTTSVEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLK 637
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
GVA HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 638 RGVAVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGF 697
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTAS 366
L E QMAGRAGRRG+D G V+++ G E L + L SQF +
Sbjct: 698 RNLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMMGKPTILQSQFRLT 755
Query: 367 YGMVLNLL 374
Y M+LNLL
Sbjct: 756 YTMILNLL 763
>gi|389864289|ref|YP_006366529.1| helicase helY [Modestobacter marinus]
gi|388486492|emb|CCH88044.1| putative helicase helY [Modestobacter marinus]
Length = 950
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 164/489 (33%), Positives = 221/489 (45%), Gaps = 60/489 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + L D+ +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E A W
Sbjct: 129 LYADAPALTDLGYVVMDEVHYLADRFRGAVWEEVIIHLPEHVRLVSLSATVSNAEEFADW 188
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE---- 129
+ + G T+++ S RP+PL + + L + + LST E
Sbjct: 189 LVTVRGDTKVVVSEVRPIPLWQHMLVGGRVFDLFALRPAAHAGEWEQTPRGLSTRERGRA 248
Query: 130 -VKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 184
V P Y RR +S H S + I R
Sbjct: 249 VVDPELVRYVHEQERRHDS-WHGGGGSGIRGGGNRPRYRPPSRPEVIER----------- 296
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAV-QYL-EDCNLLDECEMSEVELALKRFRILYPDAV-- 240
L +LPAI F+F+R GCDAAV Q L L DE E S + + R P+
Sbjct: 297 -LDRAGLLPAITFVFSRNGCDAAVGQCLASGMRLTDEVERSAIAEVIDRRTGSLPEEDLH 355
Query: 241 -------REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
RE GLL G AAHHAG +P +K +EE F RGLVK VFATETLA GINMPA
Sbjct: 356 VLGFWEWRE----GLLAGFAAHHAGLVPAFKETVEECFVRGLVKAVFATETLALGINMPA 411
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K +T E Q+ GRAGRRGID GH V+V P L
Sbjct: 412 RTVVLEKLVKWNGEAHADVTPGEYTQLTGRAGRRGIDIEGHAVVVWAPGVDPAVVAGLAS 471
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
PL S F SY M +NL+ GR + AR+L+ SF +
Sbjct: 472 TRTYPLRSSFRPSYNMAVNLVGA-----------------FGR--DRARELLASSFAQFQ 512
Query: 414 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 473
++ + +++ L E++D S +L A Y + E + E
Sbjct: 513 ADRSVVGLARSAARHEEDAARLAKEMNDGL----SAAVLDVAGYARLRMEVSEREKELSR 568
Query: 474 RTELRRRME 482
T+ RRR +
Sbjct: 569 DTQARRRAD 577
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 15/156 (9%)
Query: 751 TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNS 810
+ V+ G + I E +L A +R + L A+LAA ++LV E
Sbjct: 777 SPVVTDAGRRLSRIWSETDLLTAECIRAGVFRGLNAAELAACVSALVFEA-------RRE 829
Query: 811 SIYEPSTTVINVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 867
PS V L E R L+L + +H V + LD F WA G T
Sbjct: 830 GPGTPSVPAGKVSAALAEMRRVQLQLADVEREHEVPVTRELDLGFVWAAYRWADGQTLDR 889
Query: 868 MMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPD 898
++ L GD R R+ +DLL Q+ K+ D
Sbjct: 890 VLAGAEQAGTELSGGDFVRWARQLVDLLDQLAKVAD 925
>gi|420237048|ref|ZP_14741521.1| helicase [Parascardovia denticolens IPLA 20019]
gi|391879744|gb|EIT88248.1| helicase [Parascardovia denticolens IPLA 20019]
Length = 966
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 232/493 (47%), Gaps = 77/493 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI + GKT LI S
Sbjct: 221 VILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSVRGKTSLIVS 280
Query: 87 SRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLSTSEVKPYKD 135
+RPVPL + + L L + KG +N +L + QL
Sbjct: 281 EKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLERK------- 333
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQVPQ---VIDT 182
++R+ A N V ++G+ L N A P+ V+D
Sbjct: 334 --AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHTPRRWAVVDE 391
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVE-----LALKRFRIL 235
L L +LP I+FIF+R GCD AV +L E E+ +A +
Sbjct: 392 LDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSRKEAQEIRQIVDSMAYGQLTAD 448
Query: 236 YPDAVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
A+R + L +G+A HHAG + +++ +E+LF++GL+KVVFATETLA GINMPAR
Sbjct: 449 DKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETLALGINMPAR 508
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P + L
Sbjct: 509 SVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLPQTALALASK 568
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
V PL S F ++ M +NLL N D L+ AR+ ++ SF +
Sbjct: 569 RVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTLDHSFAQW-- 607
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 474
L+AK+ +IQ L D A D Y + A+ A
Sbjct: 608 -EATLSAKNLDAQIQTSRQTLEGYEKDFACD-----------YGDFADFMRIRLALTDLE 655
Query: 475 TELRRRMELKRFS 487
RR+++ +RF+
Sbjct: 656 RSGRRQLKHQRFA 668
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKN--NSSI 812
G+ I E ++ LA VL L L ++A+V ++ V E G + +N
Sbjct: 794 GQLLRRIYSEKDIVLAQVLHEGTLDSLTAEEMASVASAFVYEPRRGSSTGMPRNFPGGEK 853
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 872
+ T V+ E L E +G + +D S ++ W + ++ D
Sbjct: 854 GRLAQTAYQVLRTFQEING----LCEDYGTDSLPDIDFGLSEIMFNWVTDKPLTNILRDS 909
Query: 873 ALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 916
L GD R +RT+D+L QI + D D R + A +A+ ++++
Sbjct: 910 DLTGGDFVRNCKRTVDILTQISTVGDFLPDSRTAEVAHEAAALVNK 955
>gi|294786935|ref|ZP_06752189.1| putative ATP-dependent RNA helicase [Parascardovia denticolens
F0305]
gi|294485768|gb|EFG33402.1| putative ATP-dependent RNA helicase [Parascardovia denticolens
F0305]
Length = 866
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 235/493 (47%), Gaps = 77/493 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI + GKT LI S
Sbjct: 121 VILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSVRGKTSLIVS 180
Query: 87 SRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLSTSEVKPYKD 135
+RPVPL + + L L + KG +N +L + QL
Sbjct: 181 EKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLERK------- 233
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQVPQ---VIDT 182
++R+ A N V ++G+ L N A P+ V+D
Sbjct: 234 --AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHTPRWWAVVDE 291
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEVELALKRFRILYP 237
L L +LP I+FIF+R GCD AV L + E+ ++ ++ ++
Sbjct: 292 LDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSREEAQEIRQIVDSMAYGQLTAD 348
Query: 238 D--AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
D A+R + L +G+A HHAG + +++ +E+LF++GL+KVVFATETLA GINMPAR
Sbjct: 349 DKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETLALGINMPAR 408
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P + L
Sbjct: 409 SVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLPQTALALASK 468
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
V PL S F ++ M +NLL N D L+ AR+ ++ SF +
Sbjct: 469 RVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTLDHSFAQW-- 507
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 474
L+AK+ +IQ L D A D Y + A+ A
Sbjct: 508 -EATLSAKNLDAQIQTSRQTLEGYEKDFACD-----------YGDFADFMRIRLALTDLE 555
Query: 475 TELRRRMELKRFS 487
RR+++ +RF+
Sbjct: 556 RSGRRQLKHQRFA 568
>gi|386850164|ref|YP_006268177.1| ATP-dependent RNA helicase HelY [Actinoplanes sp. SE50/110]
gi|359837668|gb|AEV86109.1| ATP-dependent RNA helicase HelY [Actinoplanes sp. SE50/110]
Length = 918
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 205/447 (45%), Gaps = 71/447 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S S L ++ +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+N +E A W
Sbjct: 134 LYSGSSQLKNLAYVVMDEVHYLADRFRGAVWEEVIIHLPASVTLVSLSATVSNYEEFADW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL---DEKGKHMNRKLSLNYLQLSTSEV 130
+ + G+T ++ S RPVPL + + L D KH L Y T E+
Sbjct: 194 LVTVRGETSVVVSEHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRY----TREM 249
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVIDTLWHLRSR 189
+ RR G+ N R Q P + + L
Sbjct: 250 E--------RR--------------LELGERASGWNGRGGRGRRWQPPPRAEVVDRLERA 287
Query: 190 DMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA--- 244
+LPAI FIF+R GCDAAVQ L D E +E+ RI PA
Sbjct: 288 GLLPAILFIFSRAGCDAAVQQCLGAGLRLTDPDERAEIR------RIAQAKVASIPAEDL 341
Query: 245 --------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ GL +GVAAHHAG LP +K +EE F GLVK VFATETLA GINMPAR
Sbjct: 342 SVLGYWEWLDGLERGVAAHHAGMLPAFKEAVEECFVNGLVKAVFATETLALGINMPARCV 401
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
VL L K + LT E Q+ GRAGRRGID GH V++ +P L
Sbjct: 402 VLERLVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVLWSPEVDPRHVAGLASTRT 461
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
PL S F SY M +NL+ +++R+L+E SF +
Sbjct: 462 YPLRSSFRPSYNMAVNLVGTV-------------------GADKSRELLESSFAQFQADR 502
Query: 417 VMLAAKDELCKIQKETDVLTSEISDDA 443
++ + +Q+ D + + +D A
Sbjct: 503 SVVGLARQ---VQRNVDTMQTYGADAA 526
Score = 39.7 bits (91), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ + L ++ S + F ++ +V+ L + +V G T I
Sbjct: 700 ERRHRLQRDTDALRDKVAGRTGSLARTFDQVCSVLTARGYLSHDGEVT-EAGRTLGRIWS 758
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + L P +LAA + ++ E R ++ +S+ P + ++
Sbjct: 759 EADLLVAECLRQDVWAGLAPEELAAAVSMVLYE--SRREGEDRASV--PKGPISEAVDAC 814
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALDDGDLAR 881
+ + + +HG+ + D F + WA G +++ D + GD R
Sbjct: 815 AKLWTEIATEEGEHGLSLTREPDPGFVWPMFRWARGEPLAKVLASGHNYDADMPAGDFVR 874
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 924
R+ +DLL QI + +++ A A + ++R ++ AG
Sbjct: 875 WARQVLDLLGQIREAAVASPGVKETARKAISAVNRGVLAYQAG 917
>gi|259148376|emb|CAY81623.1| Ski2p [Saccharomyces cerevisiae EC1118]
gi|365764188|gb|EHN05713.1| Ski2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1287
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 204/391 (52%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGS--------------------------RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
GGS R SR + SN F Q SK +
Sbjct: 557 GGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSRGAGAIGSNK-RKFFTQDGPSKKTW- 614
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
P++++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +
Sbjct: 615 -------PEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 664
Query: 230 KRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
++ R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 665 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 724
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++
Sbjct: 725 FAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQF +Y M+LNLL
Sbjct: 785 SIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|190405440|gb|EDV08707.1| antiviral helicase SKI2 [Saccharomyces cerevisiae RM11-1a]
gi|323353725|gb|EGA85581.1| Ski2p [Saccharomyces cerevisiae VL3]
Length = 1287
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 204/391 (52%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGS--------------------------RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
GGS R SR + SN F Q SK +
Sbjct: 557 GGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSRGAGAIGSNK-RKFFTQDGPSKKTW- 614
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
P++++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +
Sbjct: 615 -------PEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 664
Query: 230 KRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
++ R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 665 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 724
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++
Sbjct: 725 FAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQF +Y M+LNLL
Sbjct: 785 SIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|151940919|gb|EDN59301.1| superkiller [Saccharomyces cerevisiae YJM789]
Length = 1287
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 204/391 (52%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGS--------------------------RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
GGS R SR + SN F Q SK +
Sbjct: 557 GGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSRGAGAIGSNK-RKFFTQDGPSKKTW- 614
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
P++++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +
Sbjct: 615 -------PEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 664
Query: 230 KRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
++ R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 665 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 724
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++
Sbjct: 725 FAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQF +Y M+LNLL
Sbjct: 785 SIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|422493681|ref|ZP_16569981.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|313838257|gb|EFS75971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
Length = 917
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 194/396 (48%), Gaps = 33/396 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVRGDVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
RRPV L + + L L D + +N +L+ ++ E + +D R R
Sbjct: 187 ERRPVALVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDSRRPRGRSG 242
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRG 203
+ + FG + R Q I + L ++LPAI F+F+R G
Sbjct: 243 KGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAIIFVFSRSG 302
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGLLKGVAAHH 256
CDAAV L + +L+ + +L A +R L + R + +G+AAHH
Sbjct: 303 CDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAFERGIAAHH 362
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T E
Sbjct: 363 AGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPGE 422
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 423 YTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYNMAVNLVG- 481
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR E+AR L+E SF +
Sbjct: 482 ----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 792
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 793 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 850 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 893
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|315226572|ref|ZP_07868360.1| helicase [Parascardovia denticolens DSM 10105 = JCM 12538]
gi|315120704|gb|EFT83836.1| helicase [Parascardovia denticolens DSM 10105 = JCM 12538]
Length = 966
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 235/493 (47%), Gaps = 77/493 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI + GKT LI S
Sbjct: 221 VILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSVRGKTSLIVS 280
Query: 87 SRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLSTSEVKPYKD 135
+RPVPL + + L L + KG +N +L + QL
Sbjct: 281 EKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLERK------- 333
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQVPQ---VIDT 182
++R+ A N V ++G+ L N A P+ V+D
Sbjct: 334 --AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHTPRWWAVVDE 391
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEVELALKRFRILYP 237
L L +LP I+FIF+R GCD AV L + E+ ++ ++ ++
Sbjct: 392 LDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSREEAQEIRQIVDSMAYGQLTAD 448
Query: 238 D--AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
D A+R + L +G+A HHAG + +++ +E+LF++GL+KVVFATETLA GINMPAR
Sbjct: 449 DKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETLALGINMPAR 508
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P + L
Sbjct: 509 SVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLPQTALALASK 568
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
V PL S F ++ M +NLL N D L+ AR+ ++ SF +
Sbjct: 569 RVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTLDHSFAQW-- 607
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 474
L+AK+ +IQ L D A D Y + A+ A
Sbjct: 608 -EATLSAKNLDAQIQTSRQTLEGYEKDFACD-----------YGDFADFMRIRLALTDLE 655
Query: 475 TELRRRMELKRFS 487
RR+++ +RF+
Sbjct: 656 RSGRRQLKHQRFA 668
>gi|363750700|ref|XP_003645567.1| hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889201|gb|AET38750.1| Hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1274
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 202/379 (53%), Gaps = 35/379 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P V+ I LSATV N E A WIG+ K
Sbjct: 432 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPHHVKFILLSATVPNTYEFATWIGRTKQKNI 491
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ--------LSTSEVKPY 133
+I++++RPVPL K L+P++D+ +RK SL + +++S+ P
Sbjct: 492 YVISTAKRPVPLEINIWAKDTLIPVIDQ-----DRKFSLKAFKKHADLLTGVASSKTIPR 546
Query: 134 KDG-GSRRRNS---RKHADMNSNNIVTSFGQHQLS---KNSINAIRRSQV-----PQVID 181
+ G+ +NS R N N + G + N + RR P++++
Sbjct: 547 RGAAGAIDKNSSGTRGGKTTNRGNKTITHGSRGVGAKGSNRSSFFRRDGPNKQTWPKLVN 606
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYP 237
+L++R++LP + F+F+++ C+ +LE + E S+V E ++ R +
Sbjct: 607 ---YLKARELLPVVIFVFSKKRCEEYADFLESTDFSTAKEKSQVYMFIEKSISRLKKEDR 663
Query: 238 DAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
D + I+ LL +G+A HH G LPI K IE LF +G VKV+FATET A G+N+P RT
Sbjct: 664 DLPQIMKIRSLLERGIAIHHGGLLPIVKELIEMLFAKGFVKVLFATETFAMGLNLPTRTV 723
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
V S + K + L E QMAGRAGRRG D G V+++ E K + GV
Sbjct: 724 VFSEIEKHDGNSLRTLNPGEFTQMAGRAGRRGKDPIGTVIIMTYNNPIDELPFKEVTLGV 783
Query: 357 EP-LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 784 PTRLKSQFRLTYNMILNLL 802
>gi|302867438|ref|YP_003836075.1| DSH domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|315506152|ref|YP_004085039.1| dsh domain-containing protein [Micromonospora sp. L5]
gi|302570297|gb|ADL46499.1| DSH domain protein [Micromonospora aurantiaca ATCC 27029]
gi|315412771|gb|ADU10888.1| DSH domain protein [Micromonospora sp. L5]
Length = 926
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 185/399 (46%), Gaps = 60/399 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P+ V ++ LSATV+NA+E A W+ + G+T ++ S
Sbjct: 155 VVMDEVHYLADRFRGGVWEEVIIHLPESVTLVSLSATVSNAEEFADWLVTVRGETAVVVS 214
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L + + L+ + R++ +
Sbjct: 215 EHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPELLRYT--------------RDTMRR 260
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
++ R P ++D L +LPAI FIF+R GCDA
Sbjct: 261 LELGEGRSAGP-----GGGRRGPRWRGPMRPDIVD---RLDREGLLPAILFIFSRAGCDA 312
Query: 207 AVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVA 253
AVQ L E +E+ R++ P + GL +G+A
Sbjct: 313 AVQQCLAAGLRLTSPDERAEIR------RVVESRVTAIPGEDLSVLGYWEWLDGLERGLA 366
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR VL L K + LT
Sbjct: 367 AHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKFNGEAHVDLT 426
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V+V +P L PL S F SY M +NL
Sbjct: 427 PGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNL 486
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ AR+L+E SF +
Sbjct: 487 VGSVGAA-------------------PARELLESSFAQF 506
>gi|324500801|gb|ADY40367.1| Helicase SKI2W [Ascaris suum]
Length = 1321
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 192/374 (51%), Gaps = 49/374 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELIT 85
++ DEVHY++D RG VWEE++I P V+I+ LSATV N E A W+G+I K ++
Sbjct: 457 VIFDEVHYINDAERGHVWEEVLIMLPGHVKIVMLSATVPNCIEFADWVGRIKNRKINVVM 516
Query: 86 SSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+SRRPVPL Y T+ L ++D G+ + R SL D S+
Sbjct: 517 TSRRPVPLEHYLYTGQDGKTRKDLFKIVDSNGEFIQRGYSL------------VADAKSK 564
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R A + N SK N I+ + HLR +++LP + F+F
Sbjct: 565 LRKISSGAKVYRPN----------SKTDKNI--------YINLIEHLRVQNLLPMVVFVF 606
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAIKGLL----KGVA 253
+RR CD L+ +L E SE+ + R+ D + P + + +G A
Sbjct: 607 SRRRCDENAALLQSVDLTTAKEKSEIHHFFSKCIDRLRGSDK-KLPQVLQMAELCKRGFA 665
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K +E LFQ+G VK++FATET A G+NMPART V S+ K L+
Sbjct: 666 VHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARTVVFDSMQKHDGREMRTLS 725
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--ECCKLLFAGVEPLVSQFTASYGMVL 371
+E QMAGRAGRRG+D+ G V+++ + E E +++ L S+F +Y M+L
Sbjct: 726 PSEYIQMAGRAGRRGLDSTGTVIVLCKGPDAPEPTELTRMMMGKPMKLESRFRVTYSMLL 785
Query: 372 NLLAGAKVMHLSNE 385
NLL +V HL E
Sbjct: 786 NLL---RVEHLRIE 796
>gi|323303729|gb|EGA57515.1| Ski2p [Saccharomyces cerevisiae FostersB]
Length = 1287
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 204/391 (52%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGS--------------------------RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
GGS R SR + SN F Q SK +
Sbjct: 557 GGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSRGAGAIGSNK-RKFFTQDGPSKKTW- 614
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
P++++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +
Sbjct: 615 -------PEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 664
Query: 230 KRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
++ R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 665 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 724
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++
Sbjct: 725 FAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQF +Y M+LNLL
Sbjct: 785 SIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|269956566|ref|YP_003326355.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305247|gb|ACZ30797.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 981
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 140/408 (34%), Positives = 196/408 (48%), Gaps = 46/408 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ VQ++ LSATV+NA+E W+ + G T ++ S
Sbjct: 159 VVMDEVHYLADRFRGPVWEEVIIHLADHVQLVSLSATVSNAEEFGDWLEMVRGDTAVVVS 218
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-------------- 132
RRPVPL W +A P +G L ++ + V P
Sbjct: 219 ERRPVPL-WQHVVVSAREP----RGTPRLYDLYAGHVDPTDPGVNPPINPELHDVFRTSG 273
Query: 133 -YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
D R N R+ + G+ + + P + L + +
Sbjct: 274 RRADDDGRSGNGRRGSGQRGPGDRGYRGRGGYRPGVAGLAPQRRTPPRFAVVDALDADAL 333
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE---LALKRFRILYPDAVREPA---- 244
LPAI+FIF+R GC+ AVQ L E E L +R + P+ +
Sbjct: 334 LPAIYFIFSRAGCEGAVQQCLTAGLRLTSPQEEAEIRRLVEQRTATIPPEDLDVLGYWSW 393
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
++ L +G+AAHHAG LP++K +E+LF RGLVKVVFATETLA GINMPAR+ VL L K
Sbjct: 394 LQALARGIAAHHAGLLPVFKETVEDLFARGLVKVVFATETLALGINMPARSVVLEKLVKW 453
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+ +T E Q+ GRAGRRGID GH V+V L PL S F
Sbjct: 454 DGTAHQPVTPGEYTQLTGRAGRRGIDVEGHAVVVDHTGLDPVALAGLASRRTYPLRSSFR 513
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+Y M +NL+ ++V H + AR+++E SF +
Sbjct: 514 PTYNMAVNLV--SQVGH-----------------DRAREVLETSFAQF 542
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 16/199 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV---------IFPL 757
E+ +L +RL +RIE S + F + V+ R LD + +
Sbjct: 757 ERHDQLAGEHRRLVQRIEGRTGSVARIFDKTCTVLETLRYLDRSDDAGSDGRGELQVTAD 816
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G + EN+L LA LR L LAA +++V G + ++ + Y P
Sbjct: 817 GAWLRRVYAENDLLLAECLRRGTWDGLDAPGLAAAVSTVVYSGRR----EDAAEPYVPGG 872
Query: 818 TVINVINVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
+ LD S +L+E HG++ LD V WA G ++ L
Sbjct: 873 PHGRLAQALDATVRVWSEVTDLEELHGLDATGPLDLGIVAPVHRWAGGKGLDAVLRGTDL 932
Query: 875 DDGDLARLLRRTIDLLAQI 893
GD R ++ +D+L Q+
Sbjct: 933 AAGDFVRWCKQVVDVLDQL 951
>gi|255714128|ref|XP_002553346.1| KLTH0D14630p [Lachancea thermotolerans]
gi|238934726|emb|CAR22908.1| KLTH0D14630p [Lachancea thermotolerans CBS 6340]
Length = 1267
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 199/376 (52%), Gaps = 32/376 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 427 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 486
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL K L+P+++EK + + + E+ K G R+
Sbjct: 487 YVISTPKRPVPLEINIWAKDRLVPVINEKREFLEANFK------AHKELVSGKSGPPDRK 540
Query: 142 NSR-------------KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI--DTLWHL 186
N + A S G + N + +RS + + + HL
Sbjct: 541 NEKPGASRGRGGSARGGGAGRGGAGRGGSRGAGAVGSNRSDFFKRSGPNKKTWTNLVNHL 600
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKRFRILYPDAVRE 242
+S+D+LPA+ F+F+++ C+ +L+ N E S+ VE ++ R + D +
Sbjct: 601 KSKDLLPAVIFVFSKKRCEDYADWLDGINFCTAKERSQIHMFVEKSVTRLKKEDRDLPQI 660
Query: 243 PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+K L+ +G+A HH G LPI K IE LF +GL++V+FATET A G+N+P RT V S +
Sbjct: 661 IKMKSLVERGIAVHHGGLLPIVKELIELLFAKGLIRVLFATETFAMGLNLPTRTVVFSEI 720
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ--TPYEGAEECCKLLFAGVEP- 358
K + L E QMAGRAGRRG+D G V+++ +P E A K + GV
Sbjct: 721 QKHDGNSLRNLNPGEFTQMAGRAGRRGLDKTGTVIVMSYTSPLEQA--SFKEVALGVPTR 778
Query: 359 LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 779 LQSQFRLTYNMILNLL 794
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 739 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 798
+V+ + +D N V+ G A I EL L ++ + L D +P ++ A+ + V
Sbjct: 1077 SVLKDAGFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFLGDFEPEEIVALLSVFVY 1135
Query: 799 EG---------IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
EG RL K + I E ++NV EKH ++P D
Sbjct: 1136 EGRTREEEPLVTTPRLTKGKARIQEIYKAMLNVY--------------EKH--QVPLTKD 1179
Query: 850 S-------QFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRR 885
+F+ M V WA GL+++E+M +G + R++ R
Sbjct: 1180 EAEFLEKKRFALMNVVYEWARGLSFKEIMEMSVESEGTIVRVITR 1224
>gi|256376380|ref|YP_003100040.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255920683|gb|ACU36194.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 996
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 217/453 (47%), Gaps = 53/453 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S L + +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 133 LYAGSSTLNSLGYVVMDEVHYLADRFRGPVWEEVILHLPESVRLVGLSATVSNAEEFGEW 192
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RPVPL + + L + + K++ L+ ++ +
Sbjct: 193 LVTVRGDTAVVVDEHRPVPLWQHMLAGPRMFDLFADDVADTHVKINPQLLR-QVEDLARF 251
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+R R ++ S + P +D + L + +LP
Sbjct: 252 HVPWTRGRGNKGGRPPRSTGF--------------------KPPSRVDVVQRLDAAGLLP 291
Query: 194 AIWFIFNRRGCDAAV----QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI---- 245
AI F+F+R GCDAAV +Y DE E+ + ++ R L D +
Sbjct: 292 AIVFVFSRAGCDAAVNQCVRYGLRLTTPDEVEVIR-RIVDEKTRDLPQDDLTVLGYWEWR 350
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+ L +G+A+HHAG LP +K +EELF RGLVK VFATETLA GINMPART VL L K
Sbjct: 351 EALERGIASHHAGLLPAFKETVEELFVRGLVKAVFATETLALGINMPARTVVLEKLVKYN 410
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ LT E Q+ GRAGRRGID GH V+V P + L PL S F
Sbjct: 411 GEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPKAVGGLASTRTYPLRSSFRP 470
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG--SNVMLAAKD 423
Y M +NL V L + AR L+EQSF + S V LA +
Sbjct: 471 GYNMAVNL-----VHRLGAPA--------------ARDLLEQSFAQFQADRSVVGLARRI 511
Query: 424 ELCK--IQKETDVLTSEISDDAIDRKSRRLLSE 454
E + + + +T + D A RR +SE
Sbjct: 512 ERNREALAGYAESMTCHLGDFAEYASLRRRVSE 544
>gi|417931509|ref|ZP_12574874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340775452|gb|EGR97505.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 917
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 191/397 (48%), Gaps = 35/397 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++ G ++ S
Sbjct: 127 VVLDEVHYLADRFRGPVWEEVILGLDSRVKIVGLSATVSNAEEFGEWLDEVRGGVRVVVS 186
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDGGSRRRNSR 144
RRPVPLT + + L L D + R +N + ++ E + +D R R
Sbjct: 187 ERRPVPLTQHVAVARHLHNLFDSR-----RPTDVNPELVSIAKEEARFQRDDSRRPRGRS 241
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
N + FG + + R P I + L +LPAI F+F+R
Sbjct: 242 GKGKRNVSYGTGRFGGASAQRRGRSDRPRGPRNQPSRIQVVRSLHKASLLPAIIFVFSRS 301
Query: 203 GCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAH 255
GCDAAV L D L ++ E ++ + D R + +G+AAH
Sbjct: 302 GCDAAVSQLLNTDVVLTNQQEARQLRRIAEHHGEGLTDEERRAVGWNHFVAAFERGIAAH 361
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K +T
Sbjct: 362 HAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQTHADITPG 421
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID +GH V+ P L PL S F +Y M +NL+
Sbjct: 422 EYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYNMAVNLVG 481
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
GR +AR L+E SF +
Sbjct: 482 -----------------SMGRG--KARDLLEHSFAQF 499
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 17/193 (8%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL RS+R + S +F RI V+ L + + G A I
Sbjct: 704 ERAMRLNRRSERELAKSRAKATSIATKFERIVLVLEALGYLGEGGETVTDAGRMLAGIYS 763
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTVINVI 823
E +L +R + L QLAAV +++V E G + L + E + + + I
Sbjct: 764 ELDLVTTEAIRRGVFDSLDCPQLAAVLSTIVHESRPGDRSHLHRMPDRDSEAAESQLRAI 823
Query: 824 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLA 880
R+ L+ H +E P LD F+ AWA+G +D LDD GD
Sbjct: 824 ------RAEIGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFV 872
Query: 881 RLLRRTIDLLAQI 893
R +R+ DL QI
Sbjct: 873 RRVRQVCDLAGQI 885
>gi|312139730|ref|YP_004007066.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311889069|emb|CBH48382.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 898
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 229/504 (45%), Gaps = 108/504 (21%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I++ P++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 129 VVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGAWMETVRGDTTIVVD 188
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKG---------------KHMNRKLSLNYLQLSTSEVK 131
RP+PL+ + L L D K +H+ ++L+L+ + + +
Sbjct: 189 ETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQRLALDRM----NSWE 244
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
P GG R N R P+VI L +
Sbjct: 245 PRGRGGYRS----------------------------NDFRPLPRPEVIA---RLDEEGL 273
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK----RFRILYPDAVRE---PA 244
LPAI FIF+R GC+AA L +C S++ L R R + + R P
Sbjct: 274 LPAITFIFSRAGCEAA---------LAQCVRSKLRLTTPEQTARIREIIDEHTRHLPRPD 324
Query: 245 IK---------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
++ L +G AAHHAG LP +K +EELF GLV+ VFATETLA GINMPAR+
Sbjct: 325 LEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVRAVFATETLALGINMPARS 384
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 385 VVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLASTR 444
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL S F Y M +NL+ D M A+ E+R L+E+SF +
Sbjct: 445 TFPLRSSFRPGYNMSINLV------------DRMGAV-------ESRALLERSFAQFQAD 485
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
++ I++ LT D + + ++ Y E ++E+L++ +R
Sbjct: 486 RSVVGLTR---SIERNEAALT--------DLRDKLGCADGGYFEYFRIREQLRSRERM-- 532
Query: 476 ELRRRMELKRFSALKDILKDFENG 499
L R+ R A L D G
Sbjct: 533 -LERQGRADRRGASVSSLVDLRRG 555
>gi|270010333|gb|EFA06781.1| hypothetical protein TcasGA2_TC009717, partial [Tribolium
castaneum]
Length = 1500
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 216/433 (49%), Gaps = 63/433 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY++D RG VWE+++I P V ++ LSATV N E A W+G+ H K
Sbjct: 366 DLEYVIFDEVHYINDRERGHVWEQVLILLPAHVCVVLLSATVPNTIEFADWLGRTHQRKV 425
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+IT+ +RPVPL + T T NR L LN + +K GG
Sbjct: 426 YVITTYKRPVPLLHFLYTGTG-------GASRDNRYLVLNS--------EGWKMGGY--- 467
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIW 196
+ A + + +++ Q + + P+ LW HL +++LP +
Sbjct: 468 -AAAVASLPKVDPKSAYPQAKSQYYNF-------TPKQEKVLWNGLVDHLNRKNLLPIVA 519
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLL 249
F F+R CD + L +L + E +++ + +LK P +R I L
Sbjct: 520 FTFSRAKCDQNAENLMSLDLTTQKEKAQIHMFFEKCVRSLKEPDRNIPQILRMRNI--LH 577
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KG+ HH+G LPI K +E LFQ+GL+K++FATET A G+NMPART V S++K R
Sbjct: 578 KGIGVHHSGVLPIIKEIVEMLFQKGLIKLLFATETFAMGVNMPARTVVFDSITKHDGQER 637
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L E QMAGRAGRRG+D+ G V +L + EE ++ L SQF +YG
Sbjct: 638 RNLKPAEYIQMAGRAGRRGLDSEGTVIILCKNKIPKVEELQAMMLGTPNVLQSQFRLTYG 697
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
MVL+LL +V LS E ++ +SF M+ ++EL ++
Sbjct: 698 MVLSLL---RVESLSVEG-----------------MMSRSFREADHQKKMVDKQNELLEV 737
Query: 429 QKET-DVLTSEIS 440
+KE D+ T E+S
Sbjct: 738 EKEIRDLCTQELS 750
>gi|363421211|ref|ZP_09309300.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359734946|gb|EHK83914.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 918
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 205/422 (48%), Gaps = 59/422 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S + L + +V+DEVH+L+D RG VWEE+I++ P++V++ LSATV+NA+E W
Sbjct: 135 IYASSTALIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLASLSATVSNAEEFGDW 194
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RP+PL + + + L D + + ++ P
Sbjct: 195 MTTVRGDTTVVVDEVRPIPLHQHMMLGSRIYDLFDRR---------------ADTDTAP- 238
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----AIRRSQVPQVIDTLWHLRSR 189
+R+ D+ N + S + + S + ++ R + P + + L
Sbjct: 239 ---------TRRRRDIVVNPELASAVRQRQSLSGMDRWGERGPRFRPPPRPEVIVRLDRD 289
Query: 190 DMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 247
+LPAI F+F+R GCDAAVQ +L DE E +E+ + P E + G
Sbjct: 290 GLLPAITFVFSRAGCDAAVQQCLRSGLHLTDETEAAEIRRIVDEHTRDLPRGDLE--VLG 347
Query: 248 -------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
L +G+AAHHAG LP ++ +EELF RGLV+ VFATETLA GINMPART VL
Sbjct: 348 YASWRTALERGIAAHHAGMLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLEK 407
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K +LT E Q+ GRAGRRGID GH V++ P L PL
Sbjct: 408 LVKFNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGIEPAAVAGLASTRTFPLR 467
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 420
S F SY M +NL+ V E +R L+E SF + ++
Sbjct: 468 SSFRPSYNMAVNLIDAVGV-------------------ERSRALLEMSFAQFQADKSVVG 508
Query: 421 AK 422
K
Sbjct: 509 LK 510
>gi|159037970|ref|YP_001537223.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157916805|gb|ABV98232.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 922
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 184/399 (46%), Gaps = 61/399 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G+T ++ S
Sbjct: 153 VVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFADWLVTVRGETAVVVS 212
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L + + L+ + ++
Sbjct: 213 EHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRHTRDTLR--------------- 257
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ + + +R P ++D L +LPAI FIF+R GCDA
Sbjct: 258 -RLEPGEGRGAGPGGRRGPRWRGPMR----PDIVD---RLDREGLLPAILFIFSRAGCDA 309
Query: 207 AVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVA 253
AVQ L E +E+ R++ P + GL +G+A
Sbjct: 310 AVQQCLAAGLRLTGPEERAEIR------RVVESRITAIPGEDLSVLGYWDWLDGLERGLA 363
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR VL L K + LT
Sbjct: 364 AHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLT 423
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E Q+ GRAGRRGID GH V+V +P L PL S F SY M +NL
Sbjct: 424 PGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNL 483
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ E AR L+E SF +
Sbjct: 484 VGSVGA-------------------EPARALLESSFAQF 503
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL+ ++ L +R+ S + F RI ++ R + G T + I
Sbjct: 705 ERRRRLEKDTEELRQRVAGRTGSLARTFDRIVALL-TARGYLAPDGAVTEAGRTLSRIWT 763
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + L PA+LAA + +V E R +S+ P V +
Sbjct: 764 EADLLVAECLRRGVWGGLSPAELAAAVSVVVFEA--RRDLDERASL--PRGAVATAV--- 816
Query: 827 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD----GDL 879
DE + E++ G+ + D F+ V WA G ++++ +D GD
Sbjct: 817 DETLKLWGEIEADEAARGLAVTREPDLGFAWPVYRWARGEPLAKVLVSGHVDGEMPAGDF 876
Query: 880 ARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R R+ +DLL Q+ L+ NA A ++R
Sbjct: 877 VRWARQVVDLLGQLADSGGASAELRSNARQAITAVNR 913
>gi|111017854|ref|YP_700826.1| ATP-dependent helicase [Rhodococcus jostii RHA1]
gi|110817384|gb|ABG92668.1| probable ATP-dependent helicase [Rhodococcus jostii RHA1]
Length = 911
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 232/478 (48%), Gaps = 54/478 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LS
Sbjct: 109 VVVMTTEVLRNMLYADSPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ RP+PL + L L D + + + +L
Sbjct: 169 ATVSNAEEFGAWMETVRGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALQ 225
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L + V+ K +R + + AD + G + + + R P+VI
Sbjct: 226 DLVVDQDLVRHVK-----QRQALERADSWESRGRGRRGGGRGFSSDFRPLPR---PEVIS 277
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 239
L +LPAI FIF+R GCDAA+ Q L +L +++E+ + P A
Sbjct: 278 ---RLDDEGLLPAITFIFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKA 334
Query: 240 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
E K L +G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPAR
Sbjct: 335 DLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPAR 394
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 395 TVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLAST 454
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F Y M +NL+ D M A E+R L+E+SF +
Sbjct: 455 RTFPLRSSFRPGYNMTINLV------------DRMGA-------AESRALLERSFAQFQA 495
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + + L + + + Y E A L+EEL + +R
Sbjct: 496 DRSVVGLTRGIERNEAALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|238059066|ref|ZP_04603775.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237880877|gb|EEP69705.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 933
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 195/425 (45%), Gaps = 56/425 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G+T ++ S
Sbjct: 162 VVMDEVHYLADRFRGGVWEEVIIHLPSSVTLVSLSATVSNAEEFADWLVTVRGETAVVVS 221
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L + + L+ + ++ + G
Sbjct: 222 EHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPELLRYTRETMRRLELG---------- 271
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
G + +R P ++D L +LPAI FIF+R GC A
Sbjct: 272 -----EGRSAGPGGGRRGPRWRGPLR----PDIVD---RLDREGLLPAILFIFSRAGCAA 319
Query: 207 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVAAH 255
AVQ L ++ E + R++ P + GL +G+AAH
Sbjct: 320 AVQQCLAAGL----RLTSPEERAEIRRVVESRVTAIPGEDLTVLGYWEWLDGLERGLAAH 375
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP++K +EELF RGLVK VFATETLA GINMPAR VL L K + LT
Sbjct: 376 HAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKFNGEAHVDLTPG 435
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V+V +P L PL S F SY M +NL+
Sbjct: 436 EYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLVG 495
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 435
E AR L+E SF + ++ ++ + + D
Sbjct: 496 TVGA-------------------EPARALLESSFAQFQADRSVVGLARQVQRNTETIDAY 536
Query: 436 TSEIS 440
+E +
Sbjct: 537 GAEAA 541
>gi|397730094|ref|ZP_10496856.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
gi|396933988|gb|EJJ01136.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
Length = 911
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 232/478 (48%), Gaps = 54/478 (11%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LS
Sbjct: 109 VVVMTTEVLRNMLYADSPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ RP+PL + L L D + + + +L
Sbjct: 169 ATVSNAEEFGAWMETVRGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALQ 225
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L + V+ K +R + + AD + G + + + R P+VI
Sbjct: 226 DLVVDQDLVRHVK-----QRQALERADSWESRGRGRRGGGRGFSSDFRPLPR---PEVIS 277
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 239
L +LPAI FIF+R GCDAA+ Q L +L +++E+ + P A
Sbjct: 278 ---RLDDEGLLPAITFIFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKA 334
Query: 240 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
E K L +G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPAR
Sbjct: 335 DLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPAR 394
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 395 TVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLAST 454
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F Y M +NL+ D M A E+R L+E+SF +
Sbjct: 455 RTFPLRSSFRPGYNMTINLV------------DRMGA-------AESRALLERSFAQFQA 495
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + + L + + + Y E A L+EEL + +R
Sbjct: 496 DRSVVGLTRGIERNEAALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|328856615|gb|EGG05735.1| hypothetical protein MELLADRAFT_36552 [Melampsora larici-populina
98AG31]
Length = 1274
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 193/378 (51%), Gaps = 28/378 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ +V DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 427 DVEFVVFDEVHYINDSERGVVWEEVIIMLPDHVTIILLSATVPNTKEFADWVGRTKKKDI 486
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--SLNYLQLSTSEVKPY------ 133
+I++ +RPVPL + L +L+ KG+ + + +L Q+ E
Sbjct: 487 YVISTPKRPVPLEHFLYANKDLYKILNAKGEFLGQGFVDALKRAQVKEREAAGMLPLTRM 546
Query: 134 --------KDGGSRRRNSRKHADMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 184
+ GG++ R SR + N N++ G ++ + + +
Sbjct: 547 GAAASNRGQRGGAQSRGSRSNTSARGNTNLMARGGGRGGGGHNSGRGNQEDRNLWVHLVG 606
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREP 243
L+ +++LP + F F++R C+ + + +L E SE+ + ++R + L + P
Sbjct: 607 LLKKQNLLPVVAFTFSKRRCEDNASSMPNTDLCSAKEKSEIHVIIERSLKRLNDSDKKLP 666
Query: 244 AI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
I L +GV HH G LPI K +E LF RGLVKV+FATET A G+NMPAR+ V S
Sbjct: 667 QILRMRDMLSRGVGVHHGGLLPIVKELVEILFTRGLVKVLFATETFAMGVNMPARSVVFS 726
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGV 356
+ K +L E QM+GRAGRRG+D+ G V++V Q P K+L
Sbjct: 727 GIKKHDGHSFRELLPGEYTQMSGRAGRRGLDSTGVVIIVCTDQPP--DTSTLHKMLLGQP 784
Query: 357 EPLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 785 TKLQSQFRLTYNMILNLL 802
>gi|297560479|ref|YP_003679453.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844927|gb|ADH66947.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 950
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 212/445 (47%), Gaps = 47/445 (10%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W
Sbjct: 131 LYEGSSTLGGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRMVALSATVSNAEEFGEW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE--------KGKHMNRKLSLNYLQL 125
+ Q+ G T +I +RPVPL + + L + G R+ S +
Sbjct: 191 LQQVRGDTTVIVDEKRPVPLWQHVMVGNRVHDLFVDMEEDTGPGSGDGEEREGSTGRAKK 250
Query: 126 STS-------EVKPYKDGGSRRR-NSRKHADMNSNNIVTSFG---QHQLSKNSINAIRRS 174
+ + + GG + R N R ++ +T +H S+ N RS
Sbjct: 251 RRRERRRQGWQPREIEVGGQKLRINPRLTRFAEEDSRITQLANRRRHPQSRARGNVRPRS 310
Query: 175 QV--PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEV-ELAL 229
+ P + L +LPAI FIF+R GCD AV+ L+ E E+ E A
Sbjct: 311 RFAPPSRPTIIEELDDDGLLPAITFIFSRAGCDDAVRQCLAAGLVLTTPEEADEIREYAE 370
Query: 230 KRFRILYPDAVR----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
R + P + E ++ L G+++HHAG LP +K +E LF RGL++ VFATETL
Sbjct: 371 TRCADIPPADLAVLGFEQWLRALEAGISSHHAGMLPTFKEIVEHLFSRGLIRAVFATETL 430
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPART V+ L K QLT E Q+ GRAGRRGID GH V+V
Sbjct: 431 ALGINMPARTVVIEKLDKWNGETHAQLTPGEYTQLTGRAGRRGIDVEGHAVVVWQAGTDP 490
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 405
E L PL S F SY M +NL+ Q GR + +R ++
Sbjct: 491 ESVASLAGTRTYPLNSSFQPSYNMAVNLVG-----------------QVGR--QRSRNML 531
Query: 406 EQSFGNYVGSNVMLAAKDELCKIQK 430
E SF + ++ +L K ++
Sbjct: 532 EASFAQFQADRAVVGLVKQLRKSEE 556
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 6/187 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ + L +R+E + F R+ V+ + L+ ++ + G A +
Sbjct: 739 ERYFRLRRETDGLRRRVEGRSHVISRTFDRVCGVLDDLGYLEEDS--VSDDGSRLAKVYS 796
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + L P +LAA ASLV E + +++ P V + +
Sbjct: 797 ELDLLVAECLRRGLWKGLTPVELAACAASLVYEARR----GDDAYPRLPGGRVDETLAEM 852
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
E++ +H V D F WA G ++ + GD R +
Sbjct: 853 VRLWGELSEVESRHRVSFLRQPDLGFVWTAHRWAGGDRLDAILRQADMPAGDFVRTAKML 912
Query: 887 IDLLAQI 893
+D+L QI
Sbjct: 913 VDMLGQI 919
>gi|330468496|ref|YP_004406239.1| dsh domain-containing protein [Verrucosispora maris AB-18-032]
gi|328811467|gb|AEB45639.1| dsh domain protein [Verrucosispora maris AB-18-032]
Length = 925
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 187/397 (47%), Gaps = 57/397 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G+T ++ S
Sbjct: 157 VVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFADWLITVRGETTVVVS 216
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L + + L+ + R + +
Sbjct: 217 EHRPVPLWQHMLVGKRMFDLFHDAAAARKHDVHPELLRYT--------------RETVRR 262
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
D+ G+ + + R + P D + L +LPAI FIF+R GC A
Sbjct: 263 LDL---------GEGRAAGWGGRRGPRWRGPSRPDIVERLDREGLLPAILFIFSRAGCAA 313
Query: 207 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVAAH 255
AVQ L ++ E + R++ P + GL +G+A+H
Sbjct: 314 AVQQCLAAGL----RLTSPEERAEIRRVVESRVTAIPGEDLSVLGYWEWLDGLERGLASH 369
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP++K +EELF RGLVK VFATETLA GINMPAR VL L K + LT
Sbjct: 370 HAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLTPG 429
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V+V +P L PL S F SY M +NL+
Sbjct: 430 EYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLVG 489
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
+ AR L+E SF +
Sbjct: 490 SVGA-------------------DPARALLESSFAQF 507
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 10/215 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ +RL+ ++ L +R+ S + F RI ++ TR + G I
Sbjct: 707 ERRRRLERDTEELRERVAGRTGSLARTFDRIVALL-TTRGYLTAEGEVTDAGRMLGRIWT 765
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + L PA+LAA + +V E R +S+ P V ++
Sbjct: 766 EADLLVAECLRRGVWDGLSPAELAAAVSVVVFEA--RRDVDERASL--PRGPVAEAVDAT 821
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALDDGDLAR 881
+ S + G+ + D F+ + WA G +++ +D + GD R
Sbjct: 822 LKLWSEIEADEAARGLTVTREPDLGFAWPIYRWARGEALAKVLASGHELDGEMPAGDFVR 881
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R+ +DLL Q+ L+ A A V++R
Sbjct: 882 WARQVVDLLGQVADSGGASAELRATARQAIGVVNR 916
>gi|407279624|ref|ZP_11108094.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 909
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 203/412 (49%), Gaps = 57/412 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S + L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E W
Sbjct: 127 LYASSTTLIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGDW 186
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RP+PL H + + L S P
Sbjct: 187 METVRGDTAVVVDEVRPIPL-------------------HQHVMVGPRIFDLFESAAHPD 227
Query: 134 KDGGSRRR----NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
G+ RR N + + S G+ + I R P+V+ L
Sbjct: 228 AADGTGRRGVVVNRELVEQVRRRAALDSAGRWGGPRGRIG-FRPLPRPEVV---ARLDRE 283
Query: 190 DMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 247
+LPAI F+F+R GCDAAV Q L +L E E++++ + P A E + G
Sbjct: 284 GLLPAITFVFSRAGCDAAVGQCLRAGLHLTSEAEIAQIRAVVDEHTGDLPRADLE--VLG 341
Query: 248 -------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
L +G+AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPART VL
Sbjct: 342 FREWRAALERGIAAHHAGMLPAFRHTVEDLFVRGLVRAVFATETLALGINMPARTVVLEK 401
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K +LT E Q+ GRAGRRGID GH V++ P + L PL
Sbjct: 402 LVKYNGETHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLEPADVAGLASTRTFPLR 461
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F SY M +NL+ D + A E +R L+E+SF +
Sbjct: 462 SSFRPSYNMAVNLI------------DAVGA-------EHSRALLERSFAQF 494
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 32/230 (13%)
Query: 707 EKIKRLKARSKRLTKRIEQIE-------PSGWKEFLRISNVIHE----TRALDINTQVIF 755
+++ RL R RL + + Q+ S + F RI ++ E T D +T
Sbjct: 684 DRLARLGERYNRLGREVAQMRRQSAATTNSLARTFERIVALLTERGYLTAGDDPSTT--- 740
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEP 815
GE A I E++L +A LR+ + L PA+LAAV +++V E + ++ Y P
Sbjct: 741 EAGERLARIYSESDLLVAECLRHGVWAGLSPAELAAVVSAVVYEARA----EEGATEYGP 796
Query: 816 ST----TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 871
+ + + + + + R+ + + E D F + W S + E ++
Sbjct: 797 TRPLRRALADTVRLCGQLRADEVRFKLPPTREP----DPGFVDAIYTWVSTQSLTEALLA 852
Query: 872 CA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ IDLL QI + VD +L K A A + R
Sbjct: 853 AGTAGRDLSAGDFVRWCRQVIDLLDQI-RTGAVDPQLAKTAARAIGAIRR 901
>gi|432335137|ref|ZP_19586752.1| ATP-dependent helicase [Rhodococcus wratislaviensis IFP 2016]
gi|430777935|gb|ELB93243.1| ATP-dependent helicase [Rhodococcus wratislaviensis IFP 2016]
Length = 911
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 219/453 (48%), Gaps = 53/453 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 136 VVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTVVVD 195
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RP+PL + L L D + + + +L L + V+ K +R + +
Sbjct: 196 ENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK-----QRQALER 247
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
AD + N S + R P+VI L +LPAI FIF+R GCDA
Sbjct: 248 AD-SWENRGRGRRGGGFSSD----FRPLPRPEVIS---RLDDEGLLPAITFIFSRAGCDA 299
Query: 207 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHAGC 259
A+ Q L +L +++E+ + P A E K L +G+AAHHAG
Sbjct: 300 ALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALERGLAAHHAGM 359
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K +LT E Q
Sbjct: 360 LPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQ 419
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ GRAGRRGID GH V++ P + L PL S F Y M +NL+
Sbjct: 420 LTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLV----- 474
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
D M A E+R L+E+SF + ++ + + + L +
Sbjct: 475 -------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEAALTTLRERL 520
Query: 440 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + Y E A L+EEL + +R
Sbjct: 521 GGE-----------DGEYFEYARLREELSSRER 542
>gi|302527220|ref|ZP_07279562.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
gi|302436115|gb|EFL07931.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
Length = 921
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 212/446 (47%), Gaps = 64/446 (14%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ + S + ++ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W
Sbjct: 134 LYAGSSAIPELGYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK-HMNRKLSLNYLQLSTSEVKP 132
+ ++ G T ++ RPVPL + LL L + + +L +N L
Sbjct: 194 LVEVRGDTTVVVDEHRPVPLWQHMLVGNQLLDLFAGQNEADPGEQLRINPTLL------- 246
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
RK D+ T G + + R + P +D + L +L
Sbjct: 247 -----------RKTDDLG-RFAPTFRGPRGGRRGAPPRGPRFRPPSRVDVVERLDHAGLL 294
Query: 193 PAIWFIFNRRGCDAAV--------------QYLEDCNLLDE--CEMSEVELALKRFRILY 236
PAI FIF+R GCDAAV Q E ++DE ++ E +L +L
Sbjct: 295 PAIVFIFSRAGCDAAVAQCVRSGLRLNGPDQVEEIRRIVDERTADLPEGDLG-----VLG 349
Query: 237 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
RE L +G A HHAG LP +K +EELF RGLVKVVFATETLA GINMPART
Sbjct: 350 YWEWRE----ALERGFAGHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTV 405
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
VL L K + LT E Q+ GRAGRRGID GH V+ P + L
Sbjct: 406 VLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDIEGHAVVAWQPGVDPKAVAGLASTRT 465
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
PL S F Y M +NL+A Q G + AR L+EQSF +
Sbjct: 466 YPLRSSFRPGYNMAVNLVA-----------------QVG--ADAARDLLEQSFAQFQADR 506
Query: 417 VMLAAKDELCKIQKETDVLTSEISDD 442
++ + + ++ T+ IS D
Sbjct: 507 SVVGTARRIERNKEALKGYTAAISGD 532
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 763
E+ +RL A +++L +++ S + F RI ++ E R D +V G
Sbjct: 701 ERYQRLSAETEQLERKVAATTHSLARAFDRILRLLGERGYVRPGDGEDRVT-EHGRRLTR 759
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+ E++L A +R+ + L PA+LAAV ++LV E + EP V
Sbjct: 760 LYSESDLLAAECIRHGVWNGLGPAELAAVVSTLVFEA-------RRDTAGEPRLPGGAVP 812
Query: 824 NVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALD 875
E ++EL E +H ++ D+ F+ V WA G + +++ L
Sbjct: 813 GAWQETSRLWVELTEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAAETNGQELS 872
Query: 876 DGDLARLLRRTIDLLAQI 893
GD R R+ IDLL QI
Sbjct: 873 AGDFVRWCRQVIDLLDQI 890
>gi|312132702|ref|YP_004000041.1| superfamily ii RNA helicase [Bifidobacterium longum subsp. longum
BBMN68]
gi|311773662|gb|ADQ03150.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum
BBMN68]
Length = 863
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 191/372 (51%), Gaps = 41/372 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGS 138
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGE 277
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R + RK D K + RR V +D L L MLP I+FI
Sbjct: 278 ERPDKRKGFDRGRGGKGAKG---HAPKAERHTPRRWAV---VDELNFL---GMLPGIYFI 328
Query: 199 FNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIK 246
F+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 329 FSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKFR----F 384
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 385 ALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDG 444
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQ 362
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL S
Sbjct: 445 TGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PLHSS 500
Query: 363 FTASYGMVLNLL 374
F ++ M +NLL
Sbjct: 501 FRPTFNMAVNLL 512
>gi|419963084|ref|ZP_14479066.1| ATP-dependent helicase [Rhodococcus opacus M213]
gi|414571485|gb|EKT82196.1| ATP-dependent helicase [Rhodococcus opacus M213]
Length = 909
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 219/453 (48%), Gaps = 53/453 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 134 VVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTVVVD 193
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RP+PL + L L D + + + +L L + V+ K +R + +
Sbjct: 194 ENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK-----QRQALER 245
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
AD + N S + R P+VI L +LPAI FIF+R GCDA
Sbjct: 246 AD-SWENRGRGRRGGGFSSD----FRPLPRPEVIS---RLDDEGLLPAITFIFSRAGCDA 297
Query: 207 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHAGC 259
A+ Q L +L +++E+ + P A E K L +G+AAHHAG
Sbjct: 298 ALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALERGLAAHHAGM 357
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K +LT E Q
Sbjct: 358 LPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQ 417
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ GRAGRRGID GH V++ P + L PL S F Y M +NL+
Sbjct: 418 LTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLV----- 472
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
D M A E+R L+E+SF + ++ + + + L +
Sbjct: 473 -------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEAALTTLRERL 518
Query: 440 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + Y E A L+EEL + +R
Sbjct: 519 GGE-----------DGEYFEYARLREELSSRER 540
>gi|91086489|ref|XP_970674.1| PREDICTED: similar to antiviral helicase SKI2 [Tribolium castaneum]
Length = 1177
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 216/433 (49%), Gaps = 63/433 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY++D RG VWE+++I P V ++ LSATV N E A W+G+ H K
Sbjct: 344 DLEYVIFDEVHYINDRERGHVWEQVLILLPAHVCVVLLSATVPNTIEFADWLGRTHQRKV 403
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+IT+ +RPVPL + T T NR L LN + +K GG
Sbjct: 404 YVITTYKRPVPLLHFLYTGTG-------GASRDNRYLVLN--------SEGWKMGGY--- 445
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIW 196
+ A + + +++ Q + + P+ LW HL +++LP +
Sbjct: 446 -AAAVASLPKVDPKSAYPQAKSQYYNF-------TPKQEKVLWNGLVDHLNRKNLLPIVA 497
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLL 249
F F+R CD + L +L + E +++ + +LK P +R I L
Sbjct: 498 FTFSRAKCDQNAENLMSLDLTTQKEKAQIHMFFEKCVRSLKEPDRNIPQILRMRNI--LH 555
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KG+ HH+G LPI K +E LFQ+GL+K++FATET A G+NMPART V S++K R
Sbjct: 556 KGIGVHHSGVLPIIKEIVEMLFQKGLIKLLFATETFAMGVNMPARTVVFDSITKHDGQER 615
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L E QMAGRAGRRG+D+ G V +L + EE ++ L SQF +YG
Sbjct: 616 RNLKPAEYIQMAGRAGRRGLDSEGTVIILCKNKIPKVEELQAMMLGTPNVLQSQFRLTYG 675
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
MVL+LL +V LS E ++ +SF M+ ++EL ++
Sbjct: 676 MVLSLL---RVESLSVEG-----------------MMSRSFREADHQKKMVDKQNELLEV 715
Query: 429 QKET-DVLTSEIS 440
+KE D+ T E+S
Sbjct: 716 EKEIRDLCTQELS 728
>gi|453052611|gb|EMF00090.1| ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 938
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 195/395 (49%), Gaps = 41/395 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I S
Sbjct: 147 VVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVIVS 206
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + L +EK ++ EV P +R NSR
Sbjct: 207 EHRPVPLWQHVLAGRRMYDLFEEKTGPDGTPVT------GRREVNPDLVRLARMENSRPM 260
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ + + R P ++ + L + +LPAI FIF+R GC++
Sbjct: 261 GGRDRRRGREA-----DRERERRQRSRIWTPSRVEVIERLDAEGLLPAITFIFSRAGCES 315
Query: 207 AVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHAGC 259
AVQ L D+ V ++ PD ++GL +G+AAHHAG
Sbjct: 316 AVQQCLYAGLRLNDDDARRRVREIVEERTASIPDEDLHVLGYFEWLEGLERGIAAHHAGM 375
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L K +T E Q
Sbjct: 376 LPTFKEVVEELFVKGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEYTQ 435
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMVLNLLAGA 377
+ GRAGRRGID GH V++ G + AG PL S F SY M +NL++
Sbjct: 436 LTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPLRSSFKPSYNMAVNLVS-- 491
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Q GR +R+L+E SF +
Sbjct: 492 ---------------QFGR--HRSRELLETSFAQF 509
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 765
E+ RL +++L +RIE + + F RI ++ + LD + + G A +
Sbjct: 720 ERYHRLLRDTRQLERRIEGRTNTIARTFDRICALLTD---LDYLRNDEVTEHGRRLARLY 776
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
GE +L + LR + L PA+LAA ++LV E R+ + + PS +
Sbjct: 777 GELDLLASECLREGVWDGLAPAELAACASALVYE---ARMSDDAVAPKLPSGAAKAALGE 833
Query: 826 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ L+E H + + D F+ WASG E++ + + GD
Sbjct: 834 MVRIWGRLDALEEAHRINQAEGVGQREPDLGFAWAAYRWASGHGLDEVLREIEMPAGDFV 893
Query: 881 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
R ++ ID+L QI + +NA A + + R
Sbjct: 894 RWTKQLIDVLGQIAAAAPHGSPVARNARKAVDGLLR 929
>gi|226359987|ref|YP_002777765.1| helicase [Rhodococcus opacus B4]
gi|226238472|dbj|BAH48820.1| putative helicase [Rhodococcus opacus B4]
Length = 911
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 229/478 (47%), Gaps = 54/478 (11%)
Query: 5 IVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LS
Sbjct: 109 VVVMTTEVLRNMLYADSAALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ RP+PL + L L D + + + + L
Sbjct: 169 ATVSNAEEFGAWMETVRGDTTVVVDENRPIPLWQHIMVGRRLFDLFDTRARSGDARNDLV 228
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
Q VK +R + + AD G + + + R P+VI
Sbjct: 229 VDQDLVRHVK--------QRQALERADSWEPRGRGRRGGGRGYSSDFRPLPR---PEVIS 277
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 239
L +LPAI FIF+R GCDAA+ Q L +L +++E+ + P A
Sbjct: 278 ---RLDDEGLLPAITFIFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIVDAHTGELPKA 334
Query: 240 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
E K L +G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPAR
Sbjct: 335 DLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPAR 394
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 395 TVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLAST 454
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414
PL S F Y M +NL+ D M A E+R L+E+SF +
Sbjct: 455 RTFPLRSSFRPGYNMTINLV------------DRMGA-------AESRALLERSFAQFQA 495
Query: 415 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
++ + + + L + + + Y E A L+EEL + +R
Sbjct: 496 DRSVVGLTRGIERNEAALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|170582192|ref|XP_001896019.1| helicase [Brugia malayi]
gi|158596865|gb|EDP35135.1| helicase, putative [Brugia malayi]
Length = 1127
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 235/499 (47%), Gaps = 77/499 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DEVHY++D RG VWEE++I P +I+ LSATV N E A W+G+I K +I
Sbjct: 252 VIFDEVHYINDAERGHVWEEVLIMLPAHAKIVMLSATVPNCVEFADWVGRIKKKRIYVIM 311
Query: 86 SSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNY-----LQLSTSEVKPYK 134
++RRPVPL + TK + ++D G+ + + SL ++ +++ V P
Sbjct: 312 TARRPVPLEHFLYTGQDGKTKKDMFKIIDSCGQFVQKGYSLASAAKANIRKASANVGPV- 370
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
G R NN + S+ ++ ++ I + HLR ++MLP
Sbjct: 371 --GYR-----------PNNKILSYLKNSYDDKNV----------YITVIDHLRMQNMLPV 407
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE----LALKRFRILYPDAVREPAIKGLLK 250
I F+F+RR CD L +L E E S + + R R + + +K L K
Sbjct: 408 IVFVFSRRRCDDNAYLLRSIDLTTEKEKSSIHHFFSRCIARLRGSDKNLPQVLQMKELCK 467
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
G A HH+G LPI K +E LFQ+GLVKV+FATET A G+NMPART + SL K
Sbjct: 468 HGFAIHHSGILPILKEVVELLFQKGLVKVLFATETFAMGVNMPARTVIFDSLQKHDGRQL 527
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPY-EGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG+D G V VL + PY + + L S+F +Y
Sbjct: 528 RLLNPGEYIQMAGRAGRRGLDATGSVIVLCKGPYVPDYLDLVNCMQGKPTKLESRFRVTY 587
Query: 368 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 427
M+LNLL +V HLS E ++ SL A + L +EL
Sbjct: 588 SMLLNLL---RVEHLSVEDVLRRSYVESASLRLA-----------LTQKARLKQTEELLL 633
Query: 428 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 487
++K+ D T ++ + + E L+ R+R EL EL RFS
Sbjct: 634 LKKDPDCTTCFPTEG---------------NSIVDYYENLRIFIRYRAELWP--ELIRFS 676
Query: 488 ALKDILKDFENGHLPFLCL 506
L +L G L +CL
Sbjct: 677 VLDKLLLP---GRLVIVCL 692
>gi|384495409|gb|EIE85900.1| hypothetical protein RO3G_10610 [Rhizopus delemar RA 99-880]
Length = 1100
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 195/370 (52%), Gaps = 33/370 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P V II LSATV N E AGW+G+ K
Sbjct: 303 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPAHVNIILLSATVPNTREFAGWVGRTKKKDI 362
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL Y K + + + N L+LST+ K +D ++R+
Sbjct: 363 YVISTLKRPVPLEHYLYA-----------NKDIYKIVGANELKLSTAGYKKAQDAMTKRK 411
Query: 142 NSRKHADMNSNNIVTSFGQHQLSK------NSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+ + N+N G+ S +A ++ + + L+++ +LP +
Sbjct: 412 EQIEKSSGNNNVRGGRGGRGGARGGGKPMGRSYHAAMQTDRNLFVHLIGMLKTKSLLPVV 471
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-------LYPDAVREPAIKGL 248
F F+++ C+ L +L E SE+ + ++R + P +R ++ L
Sbjct: 472 IFTFSKKRCEEYASGLSKTDLCTSLEKSEIHVFIERSLVRLRGSDKFLPQILR---MRDL 528
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L +G+A HH+G LPI K +E LF RGLVKV+FATET A G+NMPAR V S + K
Sbjct: 529 LSRGIAVHHSGLLPIIKEIVEILFARGLVKVLFATETFAMGVNMPARCVVFSGIRKHDGR 588
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFT 364
L E QM+GRAGRRG+D+ G VV++ T E E L + L SQF
Sbjct: 589 SFRDLLPGEYTQMSGRAGRRGLDSTG-VVIIATGGEEPPEASTLSTMILGKPTKLESQFR 647
Query: 365 ASYGMVLNLL 374
+Y M+LNLL
Sbjct: 648 LTYNMILNLL 657
>gi|325676819|ref|ZP_08156492.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
gi|325552367|gb|EGD22056.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
Length = 898
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 229/504 (45%), Gaps = 108/504 (21%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I++ P++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 129 VVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGAWMETVRGDTTIVVD 188
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKG---------------KHMNRKLSLNYLQLSTSEVK 131
RP+PL+ + L L D K +H+ ++L+L+ + + +
Sbjct: 189 ETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQRLALDRM----NSWE 244
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
P GG R N R P+VI L +
Sbjct: 245 PRGRGGYRS----------------------------NDFRPLPRPEVIA---RLDEEGL 273
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK----RFRILYPDAVRE---PA 244
LPAI FIF+R GC+AA L +C S++ L R R + + R P
Sbjct: 274 LPAITFIFSRAGCEAA---------LAQCVRSKLRLTTPEQTARIREIIDEHTRHLPRPD 324
Query: 245 IK---------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
++ L +G AAHHAG LP +K +EELF GLV+ VFATETLA GINMPAR+
Sbjct: 325 LEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVRAVFATETLALGINMPARS 384
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 385 VVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLASTR 444
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
PL S F Y M +NL+ D M A+ E+R L+E+SF +
Sbjct: 445 TFPLRSSFRPGYNMSINLV------------DRMGAV-------ESRALLERSFAQFQAD 485
Query: 416 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475
++ I++ LT D + + ++ Y E ++E+L++ +R
Sbjct: 486 RSVVGLTR---SIERNEAALT--------DLRDKLGGADGEYFEYFRIREQLRSRERM-- 532
Query: 476 ELRRRMELKRFSALKDILKDFENG 499
L R+ R A L D G
Sbjct: 533 -LERQGRADRRGASVSSLVDLRRG 555
>gi|340794380|ref|YP_004759843.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
gi|340534290|gb|AEK36770.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
Length = 874
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 228/489 (46%), Gaps = 95/489 (19%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V MV + S D + +V+DEVH+L+D SRG VWEE+I+ V ++ LS
Sbjct: 82 VVVMTTEVLRNMVYAGSDRLDNLTHVVMDEVHFLADPSRGPVWEEVILNLDPSVVLVSLS 141
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GW+ + G+T+LI ++ RPVPL + +LPL D K H
Sbjct: 142 ATVSNAEEFGGWLTTVRGETDLIITTHRPVPLDQFMMVDKQILPLNDPK--HPEEANRAV 199
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ +E + G P+ D
Sbjct: 200 IAAAARAEETGRRTG----------------------------------------PKRTD 219
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-------------- 225
+ + + MLPAI+FIF+R GCD AV+ L + L + + E+
Sbjct: 220 VVHRMGAAGMLPAIYFIFSRAGCDGAVRQLLVDRVRLTTDADRDEILRTVDEGVQDIPTD 279
Query: 226 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
+L + FR + L G AAHHAG LP ++ +E+LF RGL+KV FATETL
Sbjct: 280 DLGVLGFRQWR---------RALGNGYAAHHAGMLPAFRHIVEDLFTRGLLKVCFATETL 330
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A GINMPAR+ VL L K ++LT + Q+ GRAGRRGID +G+ V++ + G
Sbjct: 331 ALGINMPARSVVLEKLVKYNGEAHVELTPGQYTQLTGRAGRRGIDTQGNAVVLWS--RGI 388
Query: 346 EECCKLLFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARK 403
E AG PL S F Y M +NL+ A + +A++
Sbjct: 389 EPHSVAHLAGTRTYPLDSTFRPGYNMAVNLI-------------------ATKGYTDAQR 429
Query: 404 LVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANL 463
++++SF Y + ++ +L + +++ L +++ + R L+ E A L
Sbjct: 430 ILDRSFAQYQTATHVVEQATQLTRRRRDLAGLEKDLAAEL--RSQHTGLTATDVIEYAGL 487
Query: 464 QEELKAEKR 472
+ +L +R
Sbjct: 488 RRDLALAER 496
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G + I E++L +A LR I DL PA+LAA +++V E + ++ + + P+
Sbjct: 705 GHRLSRIHHESDLLVAQCLRRGIWDDLDPAELAAAVSTVVFENRRETTGRHTTEV--PTE 762
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDC 872
+ + + + +E+HG+ + + F+ + W +G +
Sbjct: 763 ALAAAVTAVGRIHGELVSDEERHGLPLTREPQTGFATALHQWTAGAPLDYCLRAAEAAGA 822
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
L GD R R IDLL QI
Sbjct: 823 QLTPGDFVRWCTRVIDLLEQI 843
>gi|452959574|gb|EME64911.1| ATP-dependent RNA helicase [Rhodococcus ruber BKS 20-38]
Length = 771
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 193/394 (48%), Gaps = 51/394 (12%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ S L D + +V+DEVHYL+D RG VWEE I+Y P V+++ LS
Sbjct: 106 VVVMTTEVLRSMLHGRSPLLDGLTHVVMDEVHYLADRERGAVWEEAILYLPAPVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+G + G T ++ RPVPL + L L ++ L +
Sbjct: 166 ATVSNAEEFGAWLGLVRGATTVVVEETRPVPLHQHVLAGGRLFDLFSPTTGAVDENL-VR 224
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
Y+ R+ D + + R P+++
Sbjct: 225 YVA------------------HRQLVDAAPAVSSRRRRRRSATPGPAGVDR----PELV- 261
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDA 239
L + +LPAIWF F+R GCD AV L + +++ + + R A
Sbjct: 262 --ARLEAESLLPAIWFRFSRSGCDEAVAECLRSSLRLTEAADVTHIRRIVDRH-----TA 314
Query: 240 VREPA----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
PA + GL +G AAHHAG +P+++ +EELF GLV++VFATETLA G+
Sbjct: 315 GVSPADLDALGFADWLDGLERGFAAHHAGMVPVFRHAVEELFGLGLVRIVFATETLAVGV 374
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPART VL L K TA+G ++LT+ E Q+ GRAGRRG+D GH V++ +P
Sbjct: 375 NMPARTVVLERLVKHTAAGPVRLTAGEYTQLTGRAGRRGVDREGHAVVLWSPEVQPATVA 434
Query: 350 KLLFAGVEPLVSQFTASYGMVLNL-----LAGAK 378
L PL S Y +NL +AGA+
Sbjct: 435 GLASTRTYPLNSSLRVGYNTAVNLVDRLGVAGAR 468
>gi|410075151|ref|XP_003955158.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
gi|372461740|emb|CCF56023.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
Length = 1276
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 193/380 (50%), Gaps = 28/380 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 424 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 483
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++++RPVPL K L+P+++ + ++ + LS P + + +
Sbjct: 484 YVISTAKRPVPLEINIWAKNQLIPVINPHREFLDANFKKHKDLLSGKPELPGQQNSNTGK 543
Query: 142 NSRKHADMNSNNIVT-------------------SFGQHQLSKNSINAIRRSQVPQVI-- 180
N R + G + N RR+ +
Sbjct: 544 NQRGGQRGGQTGGQRGGQRGGQRAGSQRGGLQRGARGAGAVGSNKSQFFRRAGPNKKTWP 603
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
D + +LRS+D+LP + F+F+++ C+ +LE N + E S++ + ++
Sbjct: 604 DLVNYLRSKDLLPMVVFVFSKKRCEEYADWLEGINFCNNKERSQIHMFIENSITRLKKED 663
Query: 241 RE-P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
RE P +K LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P RT
Sbjct: 664 RELPQVLKVKSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT 723
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V S + K +G LT E QMAGRAGRRG+D G V+++ K + G
Sbjct: 724 VVFSEIRKHDGNGVRDLTPGEFTQMAGRAGRRGLDKTGTVIVMAYNEPLPLLSFKEVTLG 783
Query: 356 VEP-LVSQFTASYGMVLNLL 374
V L SQF +Y M+LNLL
Sbjct: 784 VPTKLESQFRLTYNMILNLL 803
>gi|212715833|ref|ZP_03323961.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661200|gb|EEB21775.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 865
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 193/375 (51%), Gaps = 50/375 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N + + WI + G+T L+ S
Sbjct: 163 VILDEVHYLADRFRGPVWEEVIIHLPENVKIIGLSATVSNVEVFSEWIESVRGETTLVVS 222
Query: 87 SRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSEVKPYKD 135
+RPVPL + T+ L+ L D G+ +N +L QL D
Sbjct: 223 EKRPVPLEQHVLVQADDHTEPELIDLYRRDANGEQTVKLNAQLVNRLDQL---------D 273
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+ RR + D +L K + RR V +D L L DMLP I
Sbjct: 274 RQAARRRGEERPDRRRPKGKGGRWNERLHKAERHTPRRWAV---VDELNFL---DMLPGI 327
Query: 196 WFIFNRRGCDAAVQYLEDCNL----LDEC--------EMSEVELALKRFRILYPDAVREP 243
+FIF+R GCD AV + L DE EM E +L+ + + L+ R
Sbjct: 328 YFIFSRNGCDQAVDQCINAGLELTTSDEVRRIRRIVDEMVEGQLSQEDLKALHFSQFR-- 385
Query: 244 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
L +G A HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 386 --FALEEGFAPHHAGMVALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 443
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 359
+G + LT E Q+ GRAGRRGID GH V+V P A K ++ PL
Sbjct: 444 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFVPATAAALSSKRVY----PL 499
Query: 360 VSQFTASYGMVLNLL 374
S F ++ M +NLL
Sbjct: 500 HSSFRPTFNMAVNLL 514
>gi|359419360|ref|ZP_09211318.1| putative helicase [Gordonia araii NBRC 100433]
gi|358244767|dbj|GAB09387.1| putative helicase [Gordonia araii NBRC 100433]
Length = 942
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 199/385 (51%), Gaps = 28/385 (7%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S D + +V+DEVH+L+D RG VWEE+I++ V+++ LS
Sbjct: 108 VVVMTTEVVRNMIYADSAALDGLSFVVMDEVHFLADRFRGAVWEEVILHLDPSVRVVSLS 167
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG-----KHMNR 116
ATV+N++E WI + G T +I RPVPL + L L D + +N
Sbjct: 168 ATVSNSEEFGAWIQTVRGDTTVIVDEIRPVPLWQHMLVGNRLFDLYDPRSLADGNPRVNP 227
Query: 117 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176
+L+ Y+ + ++ D G RR + + + R
Sbjct: 228 ELT-RYI--AHRDLTAATDRGDRREDRKGPRRGHRGRGRRP-------SGDRGGTRPVSR 277
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLD-ECEMSEVELALKRFR 233
P+++ L +LPAI FIF+R GC+ A+ NLLD E ++ +E+A +
Sbjct: 278 PEMV---VRLDREGLLPAIDFIFSRAGCEGALAQCVRSGINLLDDEQRVAALEIADRYLA 334
Query: 234 ILYP-DAVREPAIK---GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
L P DA A + G+ +G AAHHAG LP ++ +EELF RGLV++VFATETLA GI
Sbjct: 335 ELSPVDADVLGADQWRLGISRGFAAHHAGLLPTFRHAVEELFVRGLVRMVFATETLALGI 394
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR+ VL L K + LT E Q+ GRAGRRGID GH V+V +P E
Sbjct: 395 NMPARSVVLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDTEGHAVVVWSPQMQVAEVA 454
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLL 374
L A L S F Y M +NL+
Sbjct: 455 GLAGARTFALRSSFAPEYNMAVNLI 479
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN- 821
+I E++L ++ LR + L P +LAAV ASLV R + P + +
Sbjct: 778 SIYSESDLLVSECLREGAWIGLSPDELAAVVASLV---YTSRRESGGGTDRMPGSAALRA 834
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 876
++ +E + +HGV D+ FS WASG + E +M L
Sbjct: 835 ALSGTARIWRDVVEAELRHGVTPTREPDTGFSVAAAMWASGRSLAESLMAAGEAGQLLSP 894
Query: 877 GDLARLLRRTIDLLAQI 893
GD R R+ IDLL QI
Sbjct: 895 GDFVRWNRQVIDLLDQI 911
>gi|452957431|gb|EME62798.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 909
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 203/412 (49%), Gaps = 57/412 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S + L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E W
Sbjct: 127 LYASSTTLIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGDW 186
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RP+PL H + + L S P
Sbjct: 187 METVRGDTTVVVDEVRPIPL-------------------HQHVMVGPRIFDLFESAAHPD 227
Query: 134 KDGGSRRR----NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
G+ RR N + + S G+ + I R P+V+ L
Sbjct: 228 AADGTGRRGVVVNRELVEQVRRRAALDSAGRWGGPRGRIG-FRPLPRPEVV---ARLDRE 283
Query: 190 DMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 247
+LPAI F+F+R GCDAAV Q L +L E E++++ + P A E + G
Sbjct: 284 GLLPAITFVFSRAGCDAAVGQCLRAGLHLTSEYEIAQIRAVVDEHTGDLPRADLE--VLG 341
Query: 248 -------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
L +G+AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPART VL
Sbjct: 342 FREWRAALERGIAAHHAGMLPAFRHTVEDLFVRGLVRAVFATETLALGINMPARTVVLEK 401
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
L K +LT E Q+ GRAGRRGID GH V++ P + L PL
Sbjct: 402 LVKYNGETHAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGLEPTDVAGLASTRTFPLR 461
Query: 361 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
S F SY M +NL+ D + A E +R L+E+SF +
Sbjct: 462 SSFRPSYNMAVNLI------------DAVGA-------EHSRALLERSFAQF 494
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
GE A I E++L +A LR+++ L PA+LAAV +++V E +V + ++ Y P+
Sbjct: 743 GERLARIYSESDLLVAECLRHRVWAGLSPAELAAVVSAVVYEA-RV---EEGATEYGPTG 798
Query: 818 ----TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+ + + + + R+ + + E D F + W S + E ++
Sbjct: 799 PLRRALADTVRLCGQLRADEVRFKLPPTREP----DPGFVDAIYTWVSTQSLTEALLAAG 854
Query: 874 -----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
L GD R R+ IDLL QI + VD ++ K A A + R
Sbjct: 855 SAGRDLSAGDFVRWCRQVIDLLDQI-RTGAVDPQIAKTAARAIGAIRR 901
>gi|365824846|ref|ZP_09366806.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
gi|365259034|gb|EHM89029.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
Length = 916
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 181/593 (30%), Positives = 270/593 (45%), Gaps = 101/593 (17%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V + + + L ++ +V+DEVHYL+D RG VWEE II+ VQ++ LS
Sbjct: 120 IVVMTTEVLRNMLYAGSADLENLAYVVMDEVHYLADRFRGPVWEESIIHLEASVQVVALS 179
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD----EKGKHMNRK 117
ATV+NA+E W+ ++ G ++I S RPVPL + L PL + G +NR
Sbjct: 180 ATVSNAEEFGQWLEEVRGHCQVIVSEHRPVPLKQFMMVGRKLFPLYSHEDTDSGAVINRD 239
Query: 118 LSLNYLQLSTSEVKPYKDGGSRR--RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
L+ S GG +R R R A S+ RRS
Sbjct: 240 LT------SALHRARRAQGGYKRPPRPGRFPA-----------------PPSLTPPRRSV 276
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL 235
V + L MLPAI F+F+R GC+ AV + + ++ E A + RI+
Sbjct: 277 VIEA------LHKAHMLPAIVFVFSRNGCEEAVSQAMNAGI----NLTTAEEAQQIRRII 326
Query: 236 YPDAVREPAI-----------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+ + L G+AAHHAG L +K +E+LF +GLVKVV+ATET
Sbjct: 327 QANTAQLSGADLAAVGFYSWASALEHGIAAHHAGMLTAFKETVEQLFAQGLVKVVYATET 386
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA G+NMPART VL SL K QLT + Q+ GRAGRRGID+ G+ V++
Sbjct: 387 LALGVNMPARTVVLESLRKWDGQAHNQLTPGQYTQLTGRAGRRGIDSIGYAVVLGAGQVE 446
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
A+ L PL S FT +Y M +NLL+ + AR +
Sbjct: 447 AQTVASLASKRSYPLKSAFTPNYNMAVNLLSRT-------------------NYNVARDI 487
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI---SDDAI------------DRKSR 449
+E SF + ++ K + + D L+S++ D I D++ +
Sbjct: 488 LESSFAQFQADRAVVELAASARKARAKADNLSSQMRCSHGDYISYAQLLLDISSGDKELK 547
Query: 450 RLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYK 509
+L+S E L +++A KR L R R + + + +D LP L + +
Sbjct: 548 QLISA---DETRYLTSQMRALKRGDVILLRVGRRSRHAVVLERRQDAAG--LPLLSIVDE 602
Query: 510 DSE-----GVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQ--SNGD 555
++ +E PAV LGK S +N +++ + A RL+Q + GD
Sbjct: 603 TAKVQVLTPLELKGPAVVLGKMQLGHSVGARNHSALKKTAA--RLSQMVAGGD 653
Score = 39.7 bits (91), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 716 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLA 773
+ R++ R+ S + F + V+ L+ + P G+ A I E +L +A
Sbjct: 709 ADRISARVHARTSSIARTFEAVCKVLEHFGYLEREADQLRPTARGKLLARIYAERDLLVA 768
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHR 830
L N + +L PAQLA V +S V E G KV TT +
Sbjct: 769 QCLVNGVWANLSPAQLAGVASSCVFEPRIGSKVAFSDGTLGKALRKTT----------DQ 818
Query: 831 SSFLELQEKHGVEIPCCLDSQ--FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888
+ + +QE VE+ D+Q + + W +G ++++ + GD R ++ +D
Sbjct: 819 AERIHVQEL-AVELARSGDAQWDLAEAINDWVNGADLKDVLALSEMGAGDFVRWCKQLLD 877
Query: 889 LLAQIPKLPDVDQRLQKNAV 908
L+ Q+ L +D +L+ AV
Sbjct: 878 LVRQMRSLA-LDGQLETIAV 896
>gi|194382646|dbj|BAG64493.1| unnamed protein product [Homo sapiens]
Length = 1053
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 223 DLERVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 282
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 283 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 328
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 329 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 377
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 378 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 437
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 438 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 497
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 498 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 557
Query: 370 VLNLL 374
+LNLL
Sbjct: 558 ILNLL 562
>gi|367014127|ref|XP_003681563.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
gi|359749224|emb|CCE92352.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
Length = 1257
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 168/568 (29%), Positives = 264/568 (46%), Gaps = 78/568 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 414 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 473
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGSR 139
+I++ +RPVPL K L+P++ + ++ S K +KD G+
Sbjct: 474 YVISTPKRPVPLEINIWAKNQLIPVISSNKEFLD------------SNFKKHKDLLAGAP 521
Query: 140 RRNSRKHAD-------------------------MNSNNIVTSFGQHQLSKNSINAIRRS 174
++ K A + + G ++ +
Sbjct: 522 PKDDTKDAKSGRGGGRGGQRGGLRGGPRGGQRGGRGGSRGAGAIGSNKSQFYKRGGPSKK 581
Query: 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI 234
P +++ +L+S+D+LPA+ F+F+++ C+ +LE N + E S++ + +++
Sbjct: 582 TWPDIVN---YLKSKDLLPAVVFVFSKKRCEEYADWLEGVNFCNGKEKSQIFMFIEKSVT 638
Query: 235 LYPDAVRE-P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
RE P I+ LL +G+A HH G LPI K IE LF +GL++V+FATET A G+
Sbjct: 639 RLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEMLFAKGLIRVLFATETFAMGL 698
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEE 347
N+P RT + S + K +G L E QMAGRAGRRG+D G V+++ P + A
Sbjct: 699 NLPTRTVIFSEIQKHDGTGLRNLAPGEFTQMAGRAGRRGLDKMGLVIVMAYNEPIQSA-- 756
Query: 348 CCKLLFAGVEP-LVSQFTASYGMVLNLL--AGAKVMHL------SNESDDMKALQAGRSL 398
K + GV L SQF +Y M+LNLL KV + N + Q +
Sbjct: 757 SFKEVTMGVPTKLQSQFRLTYNMILNLLRIEALKVEEMIKYSFSENSKQTLLPEQERKIN 816
Query: 399 EEARKLVEQSFGNYVGSNV-MLAAKDELCKIQKETDVLTSEISD-DAIDR--KSRRLLSE 454
E K+ E + GSNV M D + + +K T + E++ DAI K RL+
Sbjct: 817 ELEEKMEELQLYDKSGSNVDMDKFLDAVVRFRKATSQMMEELAKTDAIFHALKVGRLIVF 876
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC-------LQ 507
+ A L FRT ++ + + L E+ HLP++
Sbjct: 877 RDADDNARLG------FVFRTNMKDNSAVVMTFTQPNTLSSGESNHLPYIAGLAKYTVSN 930
Query: 508 YKDSEGVEHSVPAVYLGKFDSLDSSKLK 535
+K EG ++ + V L + + + LK
Sbjct: 931 FKRFEGTKYFMQEVPLTSIELITAYTLK 958
>gi|50285719|ref|XP_445288.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524592|emb|CAG58194.1| unnamed protein product [Candida glabrata]
Length = 1283
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 198/390 (50%), Gaps = 53/390 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 435 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 494
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK---DGGS 138
+I++ +RPVPL K L P+++EK + S + K +K DG S
Sbjct: 495 YVISTPKRPVPLEINIWAKNELKPVINEKR------------EFSDANFKKHKSLIDGKS 542
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI-----------------RRSQV----- 176
+ + K++ ++ + S +A +SQ
Sbjct: 543 AKELTSKNSTATNSRGGAATRGRGGSSRGNSARGGRGGRGGSRGAGAIGSNKSQFFRKGG 602
Query: 177 ------PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----E 226
P ++D +LR +++LP + F+F+++ C+ +L+ N D E S++ E
Sbjct: 603 PNKKTWPNLVD---YLRKKELLPMVVFVFSKKRCEEYADWLDGINFCDAKERSQIHMFIE 659
Query: 227 LALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
++ R + D + I+ LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 660 KSITRLKKEDRDLPQIQKIRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETF 719
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A G+N+P RT V S + K +G LT E QMAGRAGRRG+D G V+++
Sbjct: 720 AMGLNLPTRTVVFSEIQKHDGNGLRDLTPGEFTQMAGRAGRRGLDTIGTVIVMAYTDPLP 779
Query: 346 EECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
K + GV L SQF +Y M+LNLL
Sbjct: 780 VTSFKEVTLGVPTKLESQFRLTYNMILNLL 809
>gi|227547244|ref|ZP_03977293.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. longum ATCC 55813]
gi|227212203|gb|EEI80099.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. infantis ATCC 55813]
Length = 863
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 203/416 (48%), Gaps = 72/416 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL D
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQL---------D 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDML 192
+ RR + D + KN R P+ V+D L LR ML
Sbjct: 269 RKAARRRGEERPDKRKGFGRGR--GGKGVKNRAPKAER-HTPRRWAVVDELNFLR---ML 322
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 240
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLKLTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 356
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 -PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|384196943|ref|YP_005582687.1| type III restriction enzyme, res subunit [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110199|gb|AEF27215.1| type III restriction enzyme, res subunit [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 862
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 189/366 (51%), Gaps = 30/366 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGETKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
RPVPL + T+ +L L G + N+ LN +L + + RR
Sbjct: 218 EHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRKAARRR 275
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + ++ + + RR V +D L L MLP I+FIF+
Sbjct: 276 GEERPDKRRGFKGKGGKGHRDRVPRPERHTPRRWAV---VDELNFL---GMLPGIYFIFS 329
Query: 201 RRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGL 248
R GCD AV+ + L DE EM E +L + + L R L
Sbjct: 330 RNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR----FAL 385
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +G
Sbjct: 386 EEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGTG 445
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ LT E Q+ GRAGRRGID GH ++V L V PL S F ++
Sbjct: 446 HVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVYPLHSSFRPTFN 505
Query: 369 MVLNLL 374
M +NLL
Sbjct: 506 MAVNLL 511
>gi|254579014|ref|XP_002495493.1| ZYRO0B12650p [Zygosaccharomyces rouxii]
gi|238938383|emb|CAR26560.1| ZYRO0B12650p [Zygosaccharomyces rouxii]
Length = 1253
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/378 (34%), Positives = 197/378 (52%), Gaps = 38/378 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 414 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 473
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG--GSR 139
+I++ +RPVPL K ++P+++ + +L+ + + K DG GS+
Sbjct: 474 YVISTPKRPVPLEINVWAKNEMIPVINSNKQ---------FLEANFKKHKELLDGKPGSK 524
Query: 140 RRNSRKHADMNSNNIVTSF------------GQHQLSKNSINAIRRSQV-----PQVIDT 182
+ A + G + N ++S P++++
Sbjct: 525 ENGTGSSAASRGGSARGGRGGRGGSARGGFRGAGAVGSNKSKFFKKSGPNKKTWPELVN- 583
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPD 238
HLRS+D+LPA+ F+F+++ C+ +LE N + E S++ E ++ R R +
Sbjct: 584 --HLRSKDLLPAVVFVFSKKRCEEYADWLEGVNFCNGRERSQIHMFIEKSVTRLRKEDRE 641
Query: 239 AVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
+ I+ LL +G+A HH G LPI K IE +F +GL++V+FATET A G+N+P RT V
Sbjct: 642 LPQIIKIRSLLERGIAVHHGGLLPIVKELIEMVFAKGLIRVLFATETFAMGLNLPTRTVV 701
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
S + K G L E QMAGRAGRRG+D G V+++ K + GV
Sbjct: 702 FSEIEKHDGQGLRFLNPGEFTQMAGRAGRRGLDKTGTVIVMTYTDPLPVASFKEVTMGVP 761
Query: 358 P-LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 762 TKLESQFRLTYNMILNLL 779
>gi|291456805|ref|ZP_06596195.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|291382082|gb|EFE89600.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
Length = 862
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 38/370 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGETKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
RPVPL + T+ +L L G + N+ LN +L + + RR
Sbjct: 218 EHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNKTTKLN-AELINRLDQLDRKAARRR 275
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + ++ + + RR V +D L L MLP I+FIF+
Sbjct: 276 GEERPDKRRGFKGKGGKGHKDRVPRPERHTPRRWAV---VDELNFL---GMLPGIYFIFS 329
Query: 201 RRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGL 248
R GCD AV+ + L DE EM E +L + + L R L
Sbjct: 330 RNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR----FAL 385
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +G
Sbjct: 386 EEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGTG 445
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFT 364
+ LT E Q+ GRAGRRGID GH ++V P A K ++ PL S F
Sbjct: 446 HVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PLHSSFR 501
Query: 365 ASYGMVLNLL 374
++ M +NLL
Sbjct: 502 PTFNMAVNLL 511
>gi|410925190|ref|XP_003976064.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Takifugu
rubripes]
Length = 1320
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 191/368 (51%), Gaps = 44/368 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I +
Sbjct: 456 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI 515
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + T+ + LLD G +N+ Y
Sbjct: 516 YVISTMKRPVPLEHHLYTGNSNKTQKEMFLLLDAAGSFLNKGY--------------YAA 561
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPA 194
+R+ + KHA SFG S+N+ + R+ V TL H L R P
Sbjct: 562 VDARKERTSKHAQ--------SFGAKTSSQNTTASQDRA----VWLTLVHFLSQRQQTPV 609
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK 250
+ F F+R CD + L+ +L E +E+ + +L R R + ++ LLK
Sbjct: 610 VAFTFSRTRCDENARSLDSLDLTTSVEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLK 669
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
GVA HH+G LPI K E LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 670 KGVAVHHSGILPILKEVTEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGF 729
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTAS 366
L E QMAGRAGRRG+D G V+++ G +E L + L SQF +
Sbjct: 730 RNLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVQEMADLHVMMMGKPTVLHSQFRLT 787
Query: 367 YGMVLNLL 374
Y M+LNLL
Sbjct: 788 YTMILNLL 795
>gi|358447364|ref|ZP_09157889.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356606733|emb|CCE56249.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 945
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 197/392 (50%), Gaps = 24/392 (6%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IVV + V M+ ++S L + +V+DE+H+L+D SRG VWEE+I+ + V II LS
Sbjct: 103 IVVMTTEVLRNMIYADSTALHRLTHVVMDEIHFLADASRGAVWEEVILNLDESVSIIGLS 162
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSL 120
ATV+N++E W+ + G T +I S RPVPL + + P+ + G +N +L+
Sbjct: 163 ATVSNSEEFGDWLSTVRGDTRIIVSEHRPVPLDQWMLLGRKIFPMFEPGSGGQVNSELAR 222
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-- 178
+L + + +D + R A + + + PQ
Sbjct: 223 RIARLESGSSEEGRDDYKAGKGFRARARQQGRDGRDGRDDKDGRGHGHGGRSGAPRPQDR 282
Query: 179 -----VIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRF 232
+ L L+ ++MLPAI FIF+R GC+ A+ Q L L E +E A+
Sbjct: 283 YRPLGRPEVLQILQGQNMLPAITFIFSRAGCEGALYQCLRSRMSLTTPEEAEEIKAIVDA 342
Query: 233 RILYPDAVREPAIK---------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+ + + E ++ L +G AAHHAG LP ++ +E+LF +GLV+ VFATE
Sbjct: 343 GV---EGIPEEDLQVLNFRQWRQALSRGFAAHHAGMLPAFRHIVEDLFVKGLVRAVFATE 399
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
TLA GINMPART VL L K + LT + Q+ GRAGRRGID G+ V++ P
Sbjct: 400 TLALGINMPARTIVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTIGNAVVMWAPAM 459
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
+ L PL+S F Y M +NLL
Sbjct: 460 DPRQVAGLASTRTYPLISTFEPGYNMAINLLG 491
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 27/264 (10%)
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 717
VL + H E R ++A L +K+AR E ++ K++ +TV+ + + + R
Sbjct: 697 VLRDAIRLHPVHEWPATDREQLAGLAQKLARRE--RDLKRLTNTVERATDTLGKTFERIV 754
Query: 718 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 777
L +++ +E G E T VI G+ A I E +L +A L+
Sbjct: 755 DLLAQMDYVEFEGLGE---------------DRTPVITDEGQRLALIHNECDLLVAQCLK 799
Query: 778 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 837
+ DL PA+LA V + E K + + S + + +N + +
Sbjct: 800 RGVWDDLDPAELAGVVSMCSFENRK----ETSGSPEAATDRMAEAMNATLRIYTELTADE 855
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQ 892
+ H + + + FS + WA+G M A L GD R R+ +DLL Q
Sbjct: 856 QLHKLPLTRQPEPGFSLALHQWAAGAPLGYCMSAAAESGADLTPGDFVRHCRQAVDLLQQ 915
Query: 893 IPKLPDVDQRLQKNAVDASNVMDR 916
+ K D+ L+ NA A + + R
Sbjct: 916 VAKTAYTDE-LKANARRAVDAIQR 938
>gi|339479241|gb|ABE95709.1| Helicase helY [Bifidobacterium breve UCC2003]
Length = 862
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 189/366 (51%), Gaps = 30/366 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGETKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
RPVPL + T+ +L L G + N+ LN +L + + RR
Sbjct: 218 EHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRKAARRR 275
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + ++ + + RR V +D L L MLP I+FIF+
Sbjct: 276 GEERPDKRRGFKGKGGKGHRDRVPRPERHTPRRWAV---VDELNFL---GMLPGIYFIFS 329
Query: 201 RRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGL 248
R GCD AV+ + L DE EM E +L + + L R L
Sbjct: 330 RNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR----FAL 385
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +G
Sbjct: 386 EEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGTG 445
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ LT E Q+ GRAGRRGID GH ++V L V PL S F ++
Sbjct: 446 HVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVYPLHSSFRPTFN 505
Query: 369 MVLNLL 374
M +NLL
Sbjct: 506 MAVNLL 511
>gi|213692054|ref|YP_002322640.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384199214|ref|YP_005584957.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523515|gb|ACJ52262.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
gi|320458166|dbj|BAJ68787.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 863
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 149/415 (35%), Positives = 209/415 (50%), Gaps = 70/415 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGS 138
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGE 277
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQ---VIDTLWHLRSRDMLP 193
R + RK SFG+ + K N +++ P+ V+D L L MLP
Sbjct: 278 ERPDKRK-----------SFGRGRGGKGVKNRAPKAERHTPRRWAVVDELNFL---GMLP 323
Query: 194 AIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVR 241
I+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 324 GIYFIFSRNGCDQAVEQCINAGLKLTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR 383
Query: 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L
Sbjct: 384 ----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKL 439
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVE 357
K + + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 440 EKFDGTSHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY---- 495
Query: 358 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|401624563|gb|EJS42619.1| ski2p [Saccharomyces arboricola H-6]
Length = 1285
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 201/386 (52%), Gaps = 41/386 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 436 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 495
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL K L+P+++ + ++ + L+ K GG +
Sbjct: 496 YVISTPKRPVPLEINIWAKKELIPVINPNSEFLDANFRKHKEILNGDSTK----GGPSKS 551
Query: 142 N---------------------------SRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
+ +R A+ + + G ++ + + +
Sbjct: 552 DSGRGGSSARGGRGGTNTRGGRGGRGNSARGGANRGGSRGAGAIGSNKRKFFTQDGPSKK 611
Query: 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALK 230
P +I+ +LR +++LP + F+F+++ C+ +LE N + E S+ +E ++
Sbjct: 612 TWPDIIN---YLRKKELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSIT 668
Query: 231 RFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
R + D + I+ LL +G+A HH G LPI K IE LF +G +KV+FATET A G+
Sbjct: 669 RLKKEDRDLPQILKIRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGL 728
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
N+P RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ +
Sbjct: 729 NLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIGTF 788
Query: 350 KLLFAGVEP-LVSQFTASYGMVLNLL 374
K + GV L SQF +Y M+LNLL
Sbjct: 789 KEVTMGVPTRLQSQFRLTYNMILNLL 814
>gi|194386298|dbj|BAG59713.1| unnamed protein product [Homo sapiens]
Length = 1088
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 258 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 317
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 318 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 363
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 364 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 412
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 413 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 472
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 473 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 532
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 533 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 592
Query: 370 VLNLL 374
+LNLL
Sbjct: 593 ILNLL 597
>gi|417942181|ref|ZP_12585458.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
gi|376167566|gb|EHS86402.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
Length = 862
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 38/370 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGETKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
RPVPL + T+ +L L G + N+ LN +L + + RR
Sbjct: 218 EHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRKAARRR 275
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R + ++ + + RR V +D L L MLP I+FIF+
Sbjct: 276 GEERPDKRRGFKGKGGKGHKDRVPRPERHTPRRWAV---VDELNFL---GMLPGIYFIFS 329
Query: 201 RRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGL 248
R GCD AV+ + L DE EM E +L + + L R L
Sbjct: 330 RNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR----FAL 385
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +G
Sbjct: 386 EEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGTG 445
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFT 364
+ LT E Q+ GRAGRRGID GH ++V P A K ++ PL S F
Sbjct: 446 HVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PLHSSFR 501
Query: 365 ASYGMVLNLL 374
++ M +NLL
Sbjct: 502 PTFNMAVNLL 511
>gi|226185770|dbj|BAH33874.1| putative helicase [Rhodococcus erythropolis PR4]
Length = 905
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 223/469 (47%), Gaps = 84/469 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 130 VVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGSWMETVRGDTTVVVD 189
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNRKLSLNYLQLSTSEV 130
RP+PL + + L D + +H+ ++ +L V
Sbjct: 190 ETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALE-------RV 242
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
+ ++ G RR S + S N + R D + L
Sbjct: 243 ESWQPRGRGRRGSYQ------------------SSNDFRPLPRP------DVIAQLDQSG 278
Query: 191 MLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA---- 244
+LPAI FIF+R GCDAA+ Q L +L ++ E++ +++ P+ E
Sbjct: 279 LLPAITFIFSRAGCDAALAQCLRSRLDLTSPEQVREIDTIIEKHTGELPEEDLEVLGYRD 338
Query: 245 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
K L +G+A+HHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 339 WCKALRRGLASHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVK 398
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+LT E Q+ GRAGRRGID GH V++ P + L PL S F
Sbjct: 399 YNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLASTRTFPLRSSF 458
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 423
SY M +NL+ + M A ++RKL+E+SF + ++
Sbjct: 459 RPSYNMSINLV------------ERMGA-------ADSRKLLERSFAQFQADRSVVGLVR 499
Query: 424 ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + ++ L ++ ++ Y E A+L+E L A +R
Sbjct: 500 GIERNEEALKGLQEKLGG-----------ADGEYFEYASLRERLSARER 537
>gi|443673064|ref|ZP_21138136.1| putative helicase [Rhodococcus sp. AW25M09]
gi|443414378|emb|CCQ16474.1| putative helicase [Rhodococcus sp. AW25M09]
Length = 924
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 153/482 (31%), Positives = 221/482 (45%), Gaps = 61/482 (12%)
Query: 5 IVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
IV+ + V + +S L + +V+DEVHYL+D RG VWEE+I++ +V+++ LS
Sbjct: 114 IVIMTTEVLRNMLYASSDALRGLSHVVMDEVHYLADRFRGAVWEEVILHLSDDVRLVSLS 173
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ RPVPL+ + L L D + + + +
Sbjct: 174 ATVSNAEEFGAWMSTVRGDTSVVVDENRPVPLSQHIMVGRRLFDLFDTRAQSPDGSQKIV 233
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ VK + S R H+ + N R P VI
Sbjct: 234 VDRELVRHVKQRQSLDSMDRWHAPHSRGRGGRGGGGGRGGGQGGGANN--RPLARPDVI- 290
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALK 230
L +LPAI FIF+R GCD A+ Q + +L E +E EL +
Sbjct: 291 --AKLDEEGLLPAITFIFSRAGCDGALTQCMRSRLVLTTPEQAEEIRYIVEKHTSELPRE 348
Query: 231 RFRIL----YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
+L + DA L +G AAHHAG LP+++ +EELF +GLV+ VFATETLA
Sbjct: 349 DLEVLGFWEWRDA--------LERGFAAHHAGMLPVFRHTVEELFVKGLVRAVFATETLA 400
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
GINMPART VL L K +LT E Q+ GRAGRRGID GH V++ P
Sbjct: 401 LGINMPARTVVLEKLVKFNGETHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGTEPT 460
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 406
E L PL S F +Y M +NL+ Q G + ++R L+E
Sbjct: 461 EVAGLASTRTFPLRSSFAPAYNMSINLIE-----------------QFGAA--DSRLLLE 501
Query: 407 QSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE 466
+SF + ++ + K + D L + + + Y E A L+E
Sbjct: 502 RSFAQFQADRSVVGMVRGIEKNMQTLDALGARLGG-----------PDGEYFEYARLRER 550
Query: 467 LK 468
LK
Sbjct: 551 LK 552
>gi|229493571|ref|ZP_04387356.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|453069105|ref|ZP_21972373.1| helicase [Rhodococcus qingshengii BKS 20-40]
gi|229319532|gb|EEN85368.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|452764308|gb|EME22578.1| helicase [Rhodococcus qingshengii BKS 20-40]
Length = 903
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 223/469 (47%), Gaps = 84/469 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVHYL+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 128 VVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTVVVD 187
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNRKLSLNYLQLSTSEV 130
RP+PL + + L D + +H+ ++ +L V
Sbjct: 188 ETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALE-------RV 240
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
+ ++ G RR S + S N + R D + L
Sbjct: 241 ESWQPRGRGRRGSYQ------------------SSNDFRPLPRP------DVIAQLDQSG 276
Query: 191 MLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA---- 244
+LPAI FIF+R GCDAA+ Q L +L ++ E++ +++ P+ E
Sbjct: 277 LLPAITFIFSRAGCDAALAQCLRSRLDLTSPEQVREIDTIIEKHTGELPEEDLEVLGYRD 336
Query: 245 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
K L +G+A+HHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 337 WCKALRRGLASHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVK 396
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+LT E Q+ GRAGRRGID GH V++ P + L PL S F
Sbjct: 397 YNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLASTRTFPLRSSF 456
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 423
SY M +NL+ + M A ++RKL+E+SF + ++
Sbjct: 457 RPSYNMSINLV------------ERMGA-------ADSRKLLERSFAQFQADRSVVGLVR 497
Query: 424 ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + ++ L ++ ++ Y E A+L+E L A +R
Sbjct: 498 GIERNEEALKGLQEKLGG-----------ADGEYFEYASLRERLSARER 535
>gi|383780514|ref|YP_005465080.1| helY putative ATP-dependent RNA helicase [Actinoplanes
missouriensis 431]
gi|381373746|dbj|BAL90564.1| helY putative ATP-dependent RNA helicase [Actinoplanes
missouriensis 431]
Length = 918
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 189/409 (46%), Gaps = 53/409 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S L ++ +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+N +E A W
Sbjct: 134 LYSGSDQLRNLAYVVMDEVHYLADRFRGAVWEEVIIHLPASVTLVSLSATVSNYEEFADW 193
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL---DEKGKHMNRKLSLNYLQLSTSEV 130
+ + GKTE++ S RPVPL + + L D KH L Y
Sbjct: 194 LVTVRGKTEVVVSEHRPVPLWQHMLVGRRMFDLFHDADAAKKHDVHPELLRYT------- 246
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
R + D+ RR Q P + + L
Sbjct: 247 ----------REMDRRLDLTDRAGSGW-------SGRGGRSRRWQPPPRAEVVERLERAG 289
Query: 191 MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVREPA--- 244
+LPAI FIF+R CDAAVQ L E +++ E+A + + + +
Sbjct: 290 LLPAILFIFSRAACDAAVQQCLAAGLRLTGPDERAQIREIAQAKVANIPAEDLSVLGYWE 349
Query: 245 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+ GL +GVAAHHAG LP +K +EE F RGLVK VFATETLA GINMPAR VL L K
Sbjct: 350 WLDGLERGVAAHHAGMLPAFKEAVEECFVRGLVKAVFATETLALGINMPARCVVLERLVK 409
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+ LT E Q+ GRAGRRGID GH V++ +P L PL S F
Sbjct: 410 FNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVLWSPDVDPRHVAGLASTRTYPLRSSF 469
Query: 364 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
SY M +NL+ E +R L+E SF +
Sbjct: 470 RPSYNMAVNLVGTVGA-------------------ERSRALLESSFAQF 499
>gi|384104143|ref|ZP_10005096.1| ATP-dependent helicase [Rhodococcus imtechensis RKJ300]
gi|383838337|gb|EID77718.1| ATP-dependent helicase [Rhodococcus imtechensis RKJ300]
Length = 911
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 53/453 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ + G T ++
Sbjct: 136 VVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTVVVD 195
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RP+PL + L L D + + + +L L + V+ K +R + +
Sbjct: 196 ENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK-----QRQALER 247
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
AD S + + + R P+VI L +LPAI FIF+R GCDA
Sbjct: 248 AD--SWETRGRGRRGGGFSSDFRPLPR---PEVIS---RLDDEGLLPAITFIFSRAGCDA 299
Query: 207 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHAGC 259
A+ Q L +L +++E+ + P A E K L +G+AAHHAG
Sbjct: 300 ALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALERGLAAHHAGM 359
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K +LT E Q
Sbjct: 360 LPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQ 419
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ GRAGRRGID GH V++ P + L PL S F Y M +NL+
Sbjct: 420 LTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLV----- 474
Query: 380 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 439
D M A E+R L+E+SF + ++ + + + L +
Sbjct: 475 -------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEAALTTLRERL 520
Query: 440 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + Y E A L+EEL + +R
Sbjct: 521 GGE-----------DGEYFEYARLREELSSRER 542
>gi|402220073|gb|EJU00146.1| antiviral helicase [Dacryopinax sp. DJM-731 SS1]
Length = 1258
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 192/395 (48%), Gaps = 60/395 (15%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 401 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDI 460
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--R 139
+I++ +RPVPL Y + ++D KG+ + + YK+ G R
Sbjct: 461 YVISTPKRPVPLEHYLWAGREMHKIVDAKGEFLAQG---------------YKEAGEALR 505
Query: 140 RRNS--RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV------------------ 179
R+ R+ A + V + G Q N+ + PQ
Sbjct: 506 RKQDKEREAAGLPPVQRVGARGGAQRGANARGGQQGRGGPQARGGARGAAPPARGRGAMP 565
Query: 180 ------------IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-- 225
+ + HLR ++LP + F F++R C+ Q L + +L E SEV
Sbjct: 566 PRSFQQQDRNLYVHLVGHLRKINLLPVVVFTFSKRRCEENAQTLSNTDLCSAVEKSEVHV 625
Query: 226 --ELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
E AL R + + ++ LL +G+ HH G LPI K +E LF RGLVKV+FAT
Sbjct: 626 TIEKALTRLKGSDKKLPQIARMRDLLSRGIGVHHGGLLPIVKEVVEILFSRGLVKVLFAT 685
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---Q 339
ET A G+NMPAR+ V S + K +L E QM+GRAGRRG+D G V++V +
Sbjct: 686 ETFAMGVNMPARSVVFSGIKKHDGRNFRELLPGEYTQMSGRAGRRGLDPTGVVIIVSGDE 745
Query: 340 TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
P G ++ L SQF +Y M+LNLL
Sbjct: 746 LPDVGTLHI--MMLGQPNKLQSQFRLTYNMILNLL 778
>gi|156120140|ref|NP_001095287.1| helicase SKI2W [Sus scrofa]
gi|148724903|emb|CAN87691.1| superkiller viralicidic activity 2-like (S. cerevisiae) [Sus
scrofa]
Length = 1246
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R+ LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---LSLLASLRAREQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|162138264|gb|ABX82836.1| putative superkiller viralicidic activity 2 protein [Sus scrofa]
Length = 1246
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R+ LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---LSLLASLRAREQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|377558144|ref|ZP_09787758.1| putative helicase [Gordonia otitidis NBRC 100426]
gi|377524713|dbj|GAB32923.1| putative helicase [Gordonia otitidis NBRC 100426]
Length = 937
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 152/439 (34%), Positives = 212/439 (48%), Gaps = 40/439 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI + G+ +I
Sbjct: 130 VVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIQTVRGEVTVIVD 189
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + + + L D + K +N E+K Y + R+
Sbjct: 190 EHRPVPLQQHMLVGSQMFDLFDPHWQGGG-KPQVN------PELKRYIRHRMLLADEREG 242
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
A + A+ R Q+ +D +LPAI FIF+R GCDA
Sbjct: 243 ARGRDRRSGRGRTRSPARGRGPGALARPQLVARLD------REGLLPAIGFIFSRVGCDA 296
Query: 207 AVQYL----------EDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
A+ E+ + +DE + E+A +L D R GL +G AAH
Sbjct: 297 ALAQCLRSGLTLLTPEESSAVDEVVDRHITEIAPGDADVLGVDEWR----AGLRRGFAAH 352
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF +GLV++VFATETLA GINMPAR+ VL L K + LT
Sbjct: 353 HAGLLPTFRHTVEELFVKGLVRMVFATETLALGINMPARSVVLERLVKFNGESHVDLTPG 412
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-- 373
E Q+ GRAGRRGID GH V+V TP E+ L A PL S F Y M +NL
Sbjct: 413 EFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTFPLRSSFAPEYNMAVNLIG 472
Query: 374 ---LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LAG++ L N S QA RS+ + V+ + +V LA I+
Sbjct: 473 RRGLAGSR--ELLNRS--FAQFQADRSVVGQSRKVDDMYRRLRKLDVELAGAATKRGIEP 528
Query: 431 ETDVLTSEISDDAIDRKSR 449
+ + + DD+ D R
Sbjct: 529 GS---ITGLDDDSTDADPR 544
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 27/255 (10%)
Query: 677 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEK---IKRLKARSKRLTKRIEQIEPSGWKE 733
T++ARL+ ++ R + D + E++ I+ + + + + +R + +
Sbjct: 687 TELARLRHEL-RAHPAHQIANGDDLFRLAEQRNRLIREIVSAERAIDERTSTLGVT---- 741
Query: 734 FLRISNVIHETRALD-INTQV-IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791
F RI V+ E L+ + +V + P G + I E++L + +R I L PA+L+A
Sbjct: 742 FDRIVGVLMEFGYLEKVRNEVEVTPTGHLLSRIYSESDLLVTECIRAGIWDTLGPAELSA 801
Query: 792 VCASLVSEGIK-----VRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 846
V A++V E + N+++ T + +++ + +++ +HGV
Sbjct: 802 VVAAMVFESRRDSHAGADAMPGNTAL---RTAIAETVDIWHQ----VTDVERRHGVSPTR 854
Query: 847 CLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQ 901
D+ FS V WASG + E + L GD R R+ +DLL QI D
Sbjct: 855 EPDTGFSIAVSLWASGRSLTESLAAAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGDDA 914
Query: 902 RLQKNAVDASNVMDR 916
L ++A A + R
Sbjct: 915 PLARSARSAVGAIRR 929
>gi|119623959|gb|EAX03554.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_a [Homo sapiens]
Length = 1183
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|54025131|ref|YP_119373.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54016639|dbj|BAD58009.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 899
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 193/410 (47%), Gaps = 57/410 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S L + +V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W
Sbjct: 120 LYASSDALRGLSYVVMDEVHYLADRFRGAVWEEVILHLPADVRLVSLSATVSNAEEFGAW 179
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RPVPL + + L D K + + +
Sbjct: 180 METVRGDTAVVVDETRPVPLWQHVMVGRRMFDLFDTKSSDQKVIVDEDLV---------- 229
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
R R+ AD + +G + R P+V L L +LP
Sbjct: 230 -----RYIRHREQADR-----INGWGGPRGRGGPRRDFRPLPRPEV---LARLDEEGLLP 276
Query: 194 AIWFIFNRRGCDAAVQYL----------EDCNLLDEC-EMSEVELALKRFRILYPDAVRE 242
AI FIF+R GCD A+ ED + +D E EL +L RE
Sbjct: 277 AITFIFSRAGCDGALAQCLRSRLDLSRPEDADEIDAIIEKHTGELPKSDLEVLGYWEWRE 336
Query: 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
L +G+AAHHAG LP ++ +EELF RGLV+ VFATETLA GINMPART VL L
Sbjct: 337 ----ALHRGLAAHHAGMLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLERLV 392
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 362
K +LT E Q+ GRAGRRGID GH V++ P L PL S
Sbjct: 393 KFNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRSS 452
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
F Y M +NL+ D M A EAR L+E+SF +
Sbjct: 453 FRPGYNMSINLI------------DRMGA-------AEARALLERSFAQF 483
>gi|4379045|emb|CAA88733.1| helicase [Homo sapiens]
Length = 1246
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLQMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|407276971|ref|ZP_11105441.1| ATP-dependent RNA helicase [Rhodococcus sp. P14]
Length = 771
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 189/384 (49%), Gaps = 44/384 (11%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ S L D + +V+DEVH+L+D RG VWEE I+Y P V+++ LS
Sbjct: 106 VVVMTTEVLRSMLHGRSPLLDGLTHVVMDEVHFLADRERGAVWEEAILYLPAPVRLVSLS 165
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+G + G T ++ RPVPL + L L ++ L
Sbjct: 166 ATVSNAEEFGAWLGLVRGATTVVVEETRPVPLHQHVLAGGRLFDLFSPTTGAIDENLVRY 225
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
+ P RRR S + P+++
Sbjct: 226 VAHRQLVDAAPAVPSRRRRRRSATPGPAGVDR-----------------------PELVA 262
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL-YPDAV 240
L + +LPAIWF F+R GCD AV +C L ++E + RI+ A
Sbjct: 263 ---RLEAESLLPAIWFRFSRSGCDEAVA---EC-LRSSLRLTEAADVTRIRRIVDRHTAG 315
Query: 241 REPA----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
PA + GL +G AAHHAG +P+++ +EELF GLV++VFATETLA G+N
Sbjct: 316 VSPADLDALGFADWLDGLERGFAAHHAGMVPVFRHAVEELFGLGLVRIVFATETLAVGVN 375
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 350
MPART VL L K TA+G ++LT+ E Q+ GRAGRRG+D GH V++ +P
Sbjct: 376 MPARTVVLERLVKHTAAGPVRLTAGEYTQLTGRAGRRGVDREGHAVVLWSPEVQPATVAG 435
Query: 351 LLFAGVEPLVSQFTASYGMVLNLL 374
L PL S Y +NL+
Sbjct: 436 LASTRTYPLNSSLRVGYNTAVNLV 459
>gi|320583622|gb|EFW97835.1| Putative RNA helicase [Ogataea parapolymorpha DL-1]
Length = 1228
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 210/421 (49%), Gaps = 36/421 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P+ ++++ LSATV N E A W+G+ K
Sbjct: 387 DVEFVIFDEVHYVNDIERGVVWEEVIIMLPEHIKVVLLSATVPNTYEFASWVGRTRQKDI 446
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++S+RPVPL + K + L+D G + L+ +L + P D + +
Sbjct: 447 YVISTSKRPVPLEIFVWAKDDIFKLIDANGSFQQKNFRLHEDKLLKKKDVP--DTNDKGK 504
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-----LRSRDMLPAIW 196
+ G + + + P WH L+ +D++PA+
Sbjct: 505 SGAVVRGGARGGARGGRGGARGGSTMSGKMFKRDGPN--KNSWHNLVTFLQKKDLMPAVI 562
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKG 251
F+F+++ C+ L N E S++ + + + RE P I + L +G
Sbjct: 563 FVFSKKRCEEYADTLRGVNFCTAKEASQIHMFIDKAVSRLKKEDRELPQILKVREMLSRG 622
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HH G LPI K IE LF + L+KV+FATET A G+N+P RT V S L K +G
Sbjct: 623 IAVHHGGLLPIVKEIIEILFSKTLIKVLFATETFAMGLNLPTRTVVFSELRKHDGTGYRN 682
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMV 370
L E QM+GRAGRRG+D+ G V+++ E K + G L S+F +Y M+
Sbjct: 683 LLPGEFTQMSGRAGRRGLDSTGTVIVMAYNQPLEEFAFKEVTMGTATKLSSKFRLTYNMI 742
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
LNLL ++AL+ +++++SFG +++ + E+ K++K
Sbjct: 743 LNLLR-------------IEALR-------VEEMIKRSFGENTTQSLLPEHEIEIAKLEK 782
Query: 431 E 431
+
Sbjct: 783 Q 783
>gi|306818705|ref|ZP_07452427.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
gi|304648391|gb|EFM45694.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
Length = 810
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 203/419 (48%), Gaps = 67/419 (15%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ +++ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSA
Sbjct: 138 IIVMTTEVLRNMIYAKADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSA 197
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLN 121
TV+N+ + A W+ + G T+++++S RPVPL + A + PL + + N LN
Sbjct: 198 TVSNSRQFADWLETLRGPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LN 253
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L+ + K + N + RR
Sbjct: 254 RALLAEAAQLLMK--------------------RRGRFPRRQRANRVEIARR-------- 285
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYP 237
L+ +LPAI FIF+R GCDAA ++ L E +E E+ +R P
Sbjct: 286 ----LQREGLLPAIQFIFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNP 340
Query: 238 DAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + I + L G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPA
Sbjct: 341 EDLSASNIYAWEENLAAGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPA 400
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL +L+K S R LT+ E Q+ GRAGRRGID G+ + V + L
Sbjct: 401 RTVVLETLNKFNGSERANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAA 460
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F +Y M +NLL S + A++ VE+SF +
Sbjct: 461 GQSFPLHSAFAPNYNMAVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 812
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 871
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 872 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 905
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|258653124|ref|YP_003202280.1| DSH domain-containing protein [Nakamurella multipartita DSM 44233]
gi|258556349|gb|ACV79291.1| DSH domain protein [Nakamurella multipartita DSM 44233]
Length = 940
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 146/412 (35%), Positives = 194/412 (47%), Gaps = 41/412 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+VLDEVHYL+D RG VWEE+I++ +V ++ LSATV+NA+E W+ ++ G+ ++
Sbjct: 156 VVLDEVHYLADKFRGPVWEEVILHLAADVAVVGLSATVSNAEEFGAWLAEVRGELAVVVD 215
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L + + QL D R
Sbjct: 216 EVRPVPLWPHMMVGRRLFDLFSVRDQEAGPSDPPGSGQLRI-------DPALTRAIHDAE 268
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
A + S + + R + P +D + L +LPAI FIF+R GCDA
Sbjct: 269 ALADRFGGGGSRVGRRGERGRPPGGPRWRPPNRVDVIERLDMAGLLPAITFIFSRAGCDA 328
Query: 207 AVQYL--EDCNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 255
AV L E E E+ + R + DA RE GL +GVAAH
Sbjct: 329 AVAQCVRSGLRLTTEHERDEIRQIVDRRTVELLDADLGVLGYWEWRE----GLERGVAAH 384
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP++K +EELF GLVK VFATETLA GINMPART VL L K LT+
Sbjct: 385 HAGLLPVFKETVEELFVAGLVKAVFATETLALGINMPARTVVLEKLGKFNGESHADLTAG 444
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRGID GH V++ +P L PL S F SY M +NL+
Sbjct: 445 EYTQLTGRAGRRGIDVEGHAVVLWSPGMDPRVVGGLASRRTYPLRSSFRPSYNMAVNLV- 503
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 427
D QA AR L+EQSF Y + ++ ++ +
Sbjct: 504 ------------DRLGRQA------ARALIEQSFAQYQANGAVVGMARQVSR 537
>gi|119623960|gb|EAX03555.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_b [Homo sapiens]
gi|119623961|gb|EAX03556.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_b [Homo sapiens]
Length = 990
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|67782311|ref|NP_008860.4| helicase SKI2W [Homo sapiens]
gi|313104288|sp|Q15477.3|SKIV2_HUMAN RecName: Full=Helicase SKI2W; Short=Ski2; AltName:
Full=Helicase-like protein; Short=HLP
Length = 1246
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|269977354|ref|ZP_06184327.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307700945|ref|ZP_07637970.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
gi|269934657|gb|EEZ91218.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307613940|gb|EFN93184.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
Length = 810
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 203/419 (48%), Gaps = 67/419 (15%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ +++ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSA
Sbjct: 138 IIVMTTEVLRNMIYAKADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSA 197
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLN 121
TV+N+ + A W+ + G T+++++S RPVPL + A + PL + + N LN
Sbjct: 198 TVSNSRQFADWLETLRGPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LN 253
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L+ + K + N + RR
Sbjct: 254 RALLAEAAQLLMK--------------------RRGRFPRRQRANRVEIARR-------- 285
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYP 237
L+ +LPAI FIF+R GCDAA ++ L E +E E+ +R P
Sbjct: 286 ----LQREGLLPAIQFIFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNP 340
Query: 238 DAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + I + L G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPA
Sbjct: 341 EDLSASNIYAWEENLAAGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPA 400
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL +L+K S R LT+ E Q+ GRAGRRGID G+ + V + L
Sbjct: 401 RTVVLEALNKFNGSERANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAA 460
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F +Y M +NLL S + A++ VE+SF +
Sbjct: 461 GQSFPLHSAFAPNYNMAVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 812
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 871
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 872 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 905
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|7671650|emb|CAB89307.1| dJ34F7.7 (superkiller viralicidic activity 2 (S. cerevisiae
homolog)-like (SKI2W)) [Homo sapiens]
Length = 1245
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 415 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 474
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 475 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 520
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 521 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 569
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 570 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 629
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 630 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 689
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 690 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 749
Query: 370 VLNLL 374
+LNLL
Sbjct: 750 ILNLL 754
>gi|227875392|ref|ZP_03993533.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|227843946|gb|EEJ54114.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
Length = 810
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 203/419 (48%), Gaps = 67/419 (15%)
Query: 5 IVVFSCSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
I+V + V M+ +++ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSA
Sbjct: 138 IIVMTTEVLRNMIYAKADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSA 197
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLN 121
TV+N+ + A W+ + G T+++++S RPVPL + A + PL + + N LN
Sbjct: 198 TVSNSRQFADWLETLRGPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LN 253
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 181
L+ + K + N + RR
Sbjct: 254 RALLAEAAQLLMK--------------------RRGRFPRRQRANRVEIARR-------- 285
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYP 237
L+ +LPAI FIF+R GCDAA ++ L E +E E+ +R P
Sbjct: 286 ----LQREGLLPAIQFIFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNP 340
Query: 238 DAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + I + L G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPA
Sbjct: 341 EDLSASNIYAWEENLAAGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPA 400
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL +L+K S R LT+ E Q+ GRAGRRGID G+ + V + L
Sbjct: 401 RTVVLEALNKFNGSERANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAA 460
Query: 354 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F +Y M +NLL S + A++ VE+SF +
Sbjct: 461 GQSFPLHSAFAPNYNMAVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 756 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 812
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 871
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 872 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 905
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|355719538|gb|AES06634.1| superkiller viralicidic activity 2-like protein [Mustela putorius
furo]
Length = 1245
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLNSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSAFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|149027987|gb|EDL83438.1| superkiller viralicidic activity 2-like, isoform CRA_c [Rattus
norvegicus]
Length = 1083
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 252 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 311
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 312 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 357
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 358 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQLPVV 406
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 407 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 466
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 467 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 526
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 527 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 586
Query: 370 VLNLL 374
+LNLL
Sbjct: 587 ILNLL 591
>gi|444721130|gb|ELW61883.1| Helicase SKI2W [Tupaia chinensis]
Length = 1290
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 479 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 538
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I+++ RPVPL Y T+ L LLD +G + Y
Sbjct: 539 FVISTAARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGY--------------YAA 584
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 585 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLGSLRARAQLPVV 633
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 634 VFTFSRGRCDEQASSLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 693
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 694 GLGVHHSGVLPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 753
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 754 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKARVPEMADLHRMMMGKPSQLQSQFRLTYTM 813
Query: 370 VLNLL 374
+LNLL
Sbjct: 814 ILNLL 818
>gi|3395783|gb|AAC78607.1| putative RNA helicase Ski2w [Homo sapiens]
Length = 1246
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|294790907|ref|ZP_06756065.1| putative ATP-dependent RNA helicase [Scardovia inopinata F0304]
gi|294458804|gb|EFG27157.1| putative ATP-dependent RNA helicase [Scardovia inopinata F0304]
Length = 849
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 196/404 (48%), Gaps = 39/404 (9%)
Query: 2 QLRIVVFSCSV---GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 58
Q I+V + V + S L + +VLDE+HYLSD RG VWEE+II+ P V+++
Sbjct: 115 QADIIVMTTEVLRNMLYEGSSSLRALKYVVLDEIHYLSDRMRGGVWEEVIIHLPASVKVV 174
Query: 59 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 118
LSATV+N ++ A WI + GKT LI S RPVPL L ++ ++ +L
Sbjct: 175 GLSATVSNVEDFADWIESVRGKTSLIVSENRPVPL---------LQEVMVQQSARKEPRL 225
Query: 119 SLNYLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
YL + P + D + R+ D NS ++ + + S RS
Sbjct: 226 FDLYLDEGRKTINPALISFLDSMDKDALRRQRMDRNSRLFPSTSRRRGGTGRSGPGRHRS 285
Query: 175 ---QVPQVIDTLWHLRSR----DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
+V W L +LPAI+FIF+R GCD AVQ L ++ +
Sbjct: 286 HQAEVSHYTPNRWALVDEMDFLGLLPAIYFIFSRNGCDRAVQQCMQAGL----RLTTQDE 341
Query: 228 ALKRFRI--------LYPDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
A + RI L PD R L +G+ AHHAG + +++ +E LF+ GL
Sbjct: 342 AARICRIVDSMVYSQLDPDDARALGFASFRAALEQGIGAHHAGMITLYRQIVEHLFELGL 401
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
+KVVFATETLA GINMPAR+ V+ L K L+ E Q+ GRAGRRGID G+
Sbjct: 402 LKVVFATETLALGINMPARSVVVEKLEKFNGISHEPLSPGEFTQLTGRAGRRGIDTVGYA 461
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
V+ L V PL S F+ S+ M +NLL A V
Sbjct: 462 VVADHRGFSPHTLVALASKRVYPLHSSFSPSFNMAVNLLNSADV 505
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 762
+K RL A RL +R S ++F RI +++ + + D +V P G+
Sbjct: 622 QKWARLTAHMDRLQERYHSRTGSVSRKFDRICSILEVIGYVRKDPDRGYRVTAP-GQLLR 680
Query: 763 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 822
I E ++ +A VL + I L P +LA + + V E + R + + P + +
Sbjct: 681 RIYSERDILVAQVLLSGITDRLNPEELACIASGFVYEP-RSRADSSGLPRHFPGGSKGKI 739
Query: 823 INVLDEHRSSFLELQ---EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 879
+ + ++Q E +G+E D ++ W S +++ D + GD
Sbjct: 740 AQAVGHIMVAHTKIQALCEDYGLEPLPEPDFGMCQIIYDWVSDKPLTQVLDDTDMTGGDF 799
Query: 880 ARLLRRTIDLLAQIPKL 896
R +RT+D+L QI L
Sbjct: 800 VRNCKRTVDILTQISAL 816
>gi|16041755|gb|AAH15758.1| Superkiller viralicidic activity 2-like (S. cerevisiae) [Homo
sapiens]
gi|123982544|gb|ABM83013.1| superkiller viralicidic activity 2-like (S. cerevisiae) [synthetic
construct]
Length = 1246
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|2347134|gb|AAB67978.1| helicase [Homo sapiens]
Length = 1246
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|1403336|emb|CAA67024.1| SKI2W protein [Homo sapiens]
gi|119623962|gb|EAX03557.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_c [Homo sapiens]
Length = 1246
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|1754827|gb|AAB52523.1| helicase-like protein [Homo sapiens]
Length = 1245
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 415 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 474
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 475 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 520
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 521 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 569
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 570 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 629
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 630 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 689
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 690 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 749
Query: 370 VLNLL 374
+LNLL
Sbjct: 750 ILNLL 754
>gi|157928370|gb|ABW03481.1| superkiller viralicidic activity 2-like (S. cerevisiae) [synthetic
construct]
Length = 1246
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|403214546|emb|CCK69047.1| hypothetical protein KNAG_0B06170 [Kazachstania naganishii CBS
8797]
Length = 1283
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 198/391 (50%), Gaps = 47/391 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 428 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFATWIGRTKQKNI 487
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL K ++P++ + + + + LS + K + +
Sbjct: 488 YVISTPKRPVPLEVNIWAKGQMIPVISPAREFLETNFNKHKDLLSGT-----KADATPQN 542
Query: 142 NSRKHADMNSNN--------------------------------IVTSFGQHQLSKNSIN 169
NSR A N + G ++ +
Sbjct: 543 NSRGGAQAGRGNGKPGAGRGGARGGARGGARGGGRGGRGGNGSRGAGAIGSNRRQFFQRS 602
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---- 225
A + P++++ +LRS+D+LP + F+F+++ C+ +LE N + E S++
Sbjct: 603 APSKKTWPELVN---YLRSKDLLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIYMFI 659
Query: 226 ELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
E ++ R R + + I+ LL +G+A HH G LPI K IE LF +G +KV+FATET
Sbjct: 660 EKSITRLRKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEILFAKGFIKVLFATET 719
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A G+N+P RT V S + K +G LT E QMAGRAGRRG+D G V+++
Sbjct: 720 FAMGLNLPTRTVVFSEIRKHDGNGLRDLTPGEFTQMAGRAGRRGLDKTGTVIVMAYSEPL 779
Query: 345 AEECCKLLFAGVEP-LVSQFTASYGMVLNLL 374
+ K + GV L SQF +Y M+LNLL
Sbjct: 780 QKGSFKEVSLGVPTKLQSQFRLTYNMILNLL 810
>gi|148694811|gb|EDL26758.1| mCG15924, isoform CRA_g [Mus musculus]
Length = 1086
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 255 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 314
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 315 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 360
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 361 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 409
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 410 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 469
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 470 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 529
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 530 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 589
Query: 370 VLNLL 374
+LNLL
Sbjct: 590 ILNLL 594
>gi|403307800|ref|XP_003944371.1| PREDICTED: helicase SKI2W isoform 2 [Saimiri boliviensis
boliviensis]
Length = 1082
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 252 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 311
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 312 YVISTVTRPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 357
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 358 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 406
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 407 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 466
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 467 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 526
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 527 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 586
Query: 370 VLNLL 374
+LNLL
Sbjct: 587 ILNLL 591
>gi|313219204|emb|CBY16397.1| unnamed protein product [Oikopleura dioica]
Length = 605
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 188/360 (52%), Gaps = 58/360 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE++I P V +I LSATV N ++ A W+G+I +
Sbjct: 135 DLEWVIFDEVHYINDAERGVVWEEVLIMLPAHVGLILLSATVPNIEQFASWVGRIKNRKI 194
Query: 83 LITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+TS+ +RPVPL Y T G S +
Sbjct: 195 YVTSTLKRPVPLEHYLFT------------------------------------GNSTKT 218
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ + + ++ G ++L++ + VID L + RD LPA+ F +R
Sbjct: 219 SDQLYKIVDQTKRFLPTG-YKLAREA----------SVIDCL---KKRDGLPAVAFTLSR 264
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-LYPDAVREPAI---KGLL-KGVAAHH 256
+ CD L NL E +E+ L +R L P + P + +GLL +G+A HH
Sbjct: 265 KRCDKNAAMLSGVNLTSPGEKNEIALFYRRCTSKLKPIDRKLPQVVHLEGLLERGIAVHH 324
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LF RGLVK++FATET A G+NMPAR+ + S K G L +E
Sbjct: 325 SGVLPILKETIELLFARGLVKLLFATETFAMGVNMPARSVLFDSNRKHDGRGMRDLIPSE 384
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGA--EECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D+ G V+LVQ + A ++ ++ PL+S+F +YGM+L++L
Sbjct: 385 YIQMAGRAGRRGLDSFGTVILVQRQQKCADQQDLINMMLGKAAPLISKFRLTYGMLLSIL 444
>gi|156375784|ref|XP_001630259.1| predicted protein [Nematostella vectensis]
gi|156217276|gb|EDO38196.1| predicted protein [Nematostella vectensis]
Length = 950
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 188/374 (50%), Gaps = 56/374 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
DV+ ++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+ K
Sbjct: 137 DVEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNTLEFADWIGRTKRKKI 196
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++++RPVPL + S KT+ L L+D+ K + R + + K+
Sbjct: 197 YVISTAKRPVPLEHFLYTGNSNKTSNELFLLVDQHSKFLTRGYQ--------AAIDAKKE 248
Query: 136 GGSRRRNSR--KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRS 188
S+ +++ K A N N P+ ++W L
Sbjct: 249 RASKGKDAYGAKGARTNYN------------------------PKADRSVWLSLITMLEK 284
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RI-----LYPDAVR 241
+D LP + F F+RR C+ L + NL E S + + ++++ R+ P R
Sbjct: 285 KDKLPVVAFTFSRRKCEENADQLSNLNLTTSVERSRIHVEMQKYLARLKGSDKTLPQVTR 344
Query: 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+ L +G+ HH+G LPI K IE LFQ GLVK+++ATET A G+NMPART V S
Sbjct: 345 MQEL--LQRGIGVHHSGILPILKEMIEILFQEGLVKLLYATETFAMGVNMPARTVVFDST 402
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLV 360
K S L E QMAGRAGRRG D G V +L + A + K++ LV
Sbjct: 403 RKNDGSSFRDLLPGEYVQMAGRAGRRGKDTTGTVIILCKGDVPEASDLHKMMLGKPTTLV 462
Query: 361 SQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 463 SQFRLTYSMILNLL 476
>gi|148694806|gb|EDL26753.1| mCG15924, isoform CRA_b [Mus musculus]
Length = 1095
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 473 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|73972333|ref|XP_538841.2| PREDICTED: helicase SKI2W [Canis lupus familiaris]
Length = 1246
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|332823595|ref|XP_003311222.1| PREDICTED: helicase SKI2W [Pan troglodytes]
Length = 1053
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 223 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 282
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 283 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 328
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 329 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 377
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 378 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 437
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 438 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 497
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 498 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 557
Query: 370 VLNLL 374
+LNLL
Sbjct: 558 ILNLL 562
>gi|296197764|ref|XP_002746413.1| PREDICTED: helicase SKI2W isoform 2 [Callithrix jacchus]
Length = 1082
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 252 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 311
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 312 YVISTVTRPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 357
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 358 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 406
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 407 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 466
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 467 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 526
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 527 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 586
Query: 370 VLNLL 374
+LNLL
Sbjct: 587 ILNLL 591
>gi|449551357|gb|EMD42321.1| hypothetical protein CERSUDRAFT_90937 [Ceriporiopsis subvermispora
B]
Length = 1238
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 185/386 (47%), Gaps = 47/386 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 392 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 451
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKLSLNYLQLSTSEV 130
+I++ +RPVPL Y L ++D + G+ + RK V
Sbjct: 452 YVISTPKRPVPLEHYLYAGRDLHKIVDAERNFIGTGYKDAGEALRRKQDKEREAAGLPPV 511
Query: 131 K----------------PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
+ P GG R S + A + +F HQ KN
Sbjct: 512 QRMGARAAAPQRGGRGGPQARGGQRSGASARGAPVGRGGSPRTF--HQPDKNLF------ 563
Query: 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI 234
+ L +LR R +LP + F F+++ C+ L + +L E SE+ +A+++
Sbjct: 564 -----VHLLGNLRKRSLLPVVIFTFSKKRCEENAATLTNADLCTSVEKSEIHVAMEKALS 618
Query: 235 LYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
+ R+ P I+ L +G+ HH G LPI K +E LF RGLVKV+FATET A G+
Sbjct: 619 RLKGSDRQLPQIRRMRDLLSRGIGVHHGGLLPIVKEVVEILFARGLVKVLFATETFAMGV 678
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
NMPAR V S + K + E QMAGRAGRRG+D G V++V +
Sbjct: 679 NMPARCVVFSHIRKHDGKSFRDILPGEYTQMAGRAGRRGLDATGTVIIVANDELPEQSVL 738
Query: 350 KLLFAGV-EPLVSQFTASYGMVLNLL 374
+ G L SQF +Y M+LNLL
Sbjct: 739 NTMILGTPNKLQSQFRLTYNMILNLL 764
>gi|358420572|ref|XP_003584660.1| PREDICTED: helicase SKI2W-like [Bos taurus]
Length = 1246
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|354492827|ref|XP_003508546.1| PREDICTED: helicase SKI2W-like [Cricetulus griseus]
Length = 1243
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 412 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 471
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 472 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 517
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 518 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRARAQLPVV 566
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SEV L L+R + R+ P + + L +
Sbjct: 567 VFTFSRGRCDEQASGLTSLDLTTSSEKSEVHLFLQRCLARLRGSDRQLPQVLHMSELLRR 626
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 627 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 686
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 687 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 746
Query: 370 VLNLL 374
+LNLL
Sbjct: 747 ILNLL 751
>gi|348519375|ref|XP_003447206.1| PREDICTED: helicase SKI2W isoform 2 [Oreochromis niloticus]
Length = 1225
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 193/377 (51%), Gaps = 57/377 (15%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I +
Sbjct: 422 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHI 481
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y STKT + LLD G + + Y
Sbjct: 482 YVISTLKRPVPLEHYLYTGNSTKTQKEMFLLLDATGNFLTKGY--------------YTA 527
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ + KHA SFG S+N+ A +R Q P +
Sbjct: 528 VDAKKERTSKHAQ--------SFGTKNTSQNT-TASQRQQTP----------------VV 562
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK- 250
F F+R CD + L+ +L E +E+ + +L R R + ++ LLK
Sbjct: 563 AFTFSRTRCDDNARSLDSMDLTTSIEKAEIHSFFQKSLTRLRGGDRQLPQILLMRDLLKR 622
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+A HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 623 GIAVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFR 682
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASY 367
L E QMAGRAGRRG+D G V+++ G E L + L SQF +Y
Sbjct: 683 NLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMLGKPTLLQSQFRLTY 740
Query: 368 GMVLNLLAGAKVMHLSN 384
M+LNLL + +H+++
Sbjct: 741 TMILNLLR-VEALHVTD 756
>gi|358418375|ref|XP_003583920.1| PREDICTED: helicase SKI2W-like [Bos taurus]
gi|359078682|ref|XP_003587743.1| PREDICTED: helicase SKI2W-like [Bos taurus]
Length = 1246
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|426352519|ref|XP_004043759.1| PREDICTED: helicase SKI2W isoform 2 [Gorilla gorilla gorilla]
Length = 1053
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 223 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 282
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 283 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 328
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 329 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 377
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 378 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 437
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 438 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 497
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 498 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 557
Query: 370 VLNLL 374
+LNLL
Sbjct: 558 ILNLL 562
>gi|148694809|gb|EDL26756.1| mCG15924, isoform CRA_e [Mus musculus]
Length = 1239
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 408 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 467
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 468 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 513
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 514 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 562
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 563 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 622
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 623 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 682
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 683 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 742
Query: 370 VLNLL 374
+LNLL
Sbjct: 743 ILNLL 747
>gi|74199459|dbj|BAE41420.1| unnamed protein product [Mus musculus]
Length = 884
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 473 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|410958798|ref|XP_003986001.1| PREDICTED: helicase SKI2W [Felis catus]
Length = 1246
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|432881494|ref|XP_004073810.1| PREDICTED: helicase SKI2W-like isoform 2 [Oryzias latipes]
Length = 1227
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 187/367 (50%), Gaps = 56/367 (15%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I K
Sbjct: 424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHI 483
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + STKT + L+D G + + Y
Sbjct: 484 YVISTMKRPVPLEHHLYTGNSTKTQKEMFLLVDAAGNFLTKGY--------------YAA 529
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ S KHA +FG S+N+ A +R Q P +
Sbjct: 530 VDAKKERSSKHAQ--------TFGAKNTSQNT-TASQRQQTP----------------VV 564
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK- 250
F F+R CD + LE +L E +E+ + +L R R + ++ LLK
Sbjct: 565 AFTFSRARCDDNARSLESMDLTTSVEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKR 624
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G
Sbjct: 625 GVAVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFR 684
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASY 367
L E QMAGRAGRRG+D G V+++ G E L + L SQF +Y
Sbjct: 685 NLLPGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMMGKPTILQSQFRLTY 742
Query: 368 GMVLNLL 374
M+LNLL
Sbjct: 743 TMILNLL 749
>gi|149027985|gb|EDL83436.1| superkiller viralicidic activity 2-like, isoform CRA_a [Rattus
norvegicus]
Length = 1103
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 405 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 464
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 465 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 510
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 511 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQLPVV 559
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 560 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 619
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 620 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 679
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 680 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 739
Query: 370 VLNLL 374
+LNLL
Sbjct: 740 ILNLL 744
>gi|2944423|gb|AAC05282.1| hypothetical protein [Mus musculus]
gi|148694805|gb|EDL26752.1| mCG15924, isoform CRA_a [Mus musculus]
Length = 1236
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 405 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 464
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 465 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 510
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 511 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 559
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 560 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 619
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 620 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 679
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 680 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 739
Query: 370 VLNLL 374
+LNLL
Sbjct: 740 ILNLL 744
>gi|440907637|gb|ELR57758.1| Helicase SKI2W, partial [Bos grunniens mutus]
Length = 1240
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 410 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 469
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 470 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 515
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 516 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 564
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 565 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 624
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 625 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 684
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 685 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 744
Query: 370 VLNLL 374
+LNLL
Sbjct: 745 ILNLL 749
>gi|149027986|gb|EDL83437.1| superkiller viralicidic activity 2-like, isoform CRA_b [Rattus
norvegicus]
Length = 1236
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 405 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 464
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 465 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 510
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 511 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQLPVV 559
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 560 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 619
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 620 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 679
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 680 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 739
Query: 370 VLNLL 374
+LNLL
Sbjct: 740 ILNLL 744
>gi|26325700|dbj|BAC26604.1| unnamed protein product [Mus musculus]
Length = 1244
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 473 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|74204725|dbj|BAE35430.1| unnamed protein product [Mus musculus]
Length = 1244
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 473 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|403307798|ref|XP_003944370.1| PREDICTED: helicase SKI2W isoform 1 [Saimiri boliviensis
boliviensis]
Length = 1246
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|87252727|ref|NP_067312.2| superkiller viralicidic activity 2-like [Mus musculus]
gi|42406362|gb|AAH65999.1| Superkiller viralicidic activity 2-like (S. cerevisiae) [Mus
musculus]
Length = 1244
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 473 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|441508564|ref|ZP_20990488.1| putative helicase [Gordonia aichiensis NBRC 108223]
gi|441447592|dbj|GAC48449.1| putative helicase [Gordonia aichiensis NBRC 108223]
Length = 935
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 207/420 (49%), Gaps = 56/420 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI + G+ +I
Sbjct: 130 VVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIQTVRGEVTVIVD 189
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR-- 144
RPVPL + + + L D P++DGG + + +
Sbjct: 190 EHRPVPLQQHMLVGSRMFDLFD-----------------------PHRDGGGKPQVNPEL 226
Query: 145 ----KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT---LWHLRSRDMLPAIWF 197
+H + ++ + G+ + S R + P + + L +LPAI F
Sbjct: 227 KRYIRHRMLLADEHDSGRGRDRRSGRGRPRSTRGRGPGALSRPQLVSRLDREGLLPAIGF 286
Query: 198 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF---------RILYPDAVREPAIK 246
IF+R GCDAA+ Q L LL E + V+ + R +L D R
Sbjct: 287 IFSRVGCDAALAQCLRSGLTLLTPEESAAVDEVVDRHLTEISPGDADVLGVDEWR----A 342
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
GL +G AAHHAG LP ++ +EELF GLV++VFATETLA GINMPAR+ VL L K
Sbjct: 343 GLRRGFAAHHAGLLPTFRHTVEELFVLGLVRMVFATETLALGINMPARSVVLERLVKFNG 402
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+ LT E Q+ GRAGRRGID GH V+V TP E+ L A PL S F
Sbjct: 403 ESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTFPLRSSFAPE 462
Query: 367 YGMVLNL-----LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 421
Y M +NL LAG++ L N S QA RS+ + V+ + +V LAA
Sbjct: 463 YNMAVNLIGRRGLAGSR--ELLNRS--FAQFQADRSVVGQSRKVDDMYRRLRKLDVELAA 518
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 734 FLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791
F RI V+ E ++ N V+ P G+ + I E++L + +R I L P QLAA
Sbjct: 740 FDRIVGVLTELGYVEQERNEVVVTPTGQLLSRIYSESDLLVTECIRAAIWDTLGPPQLAA 799
Query: 792 VCASLVSEGIKVRLWKNNS--SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 849
V A++V E + ++ E T + +++ H+ S +++ +HGV D
Sbjct: 800 VVAAMVFESRRDSHAGADAMPGNVELRTAIAATLDIW--HQVS--DVERRHGVSPTREPD 855
Query: 850 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQI 893
+ FS V WA+G + E + L GD R R+ +DLL QI
Sbjct: 856 TGFSVAVSLWAAGRSLTESLAAAGERGTLLSPGDFVRWNRQIVDLLEQI 904
>gi|148694814|gb|EDL26761.1| mCG15924, isoform CRA_i [Mus musculus]
Length = 1256
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 425 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 484
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 485 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 530
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 531 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 579
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 580 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 639
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 640 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 699
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 700 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 759
Query: 370 VLNLL 374
+LNLL
Sbjct: 760 ILNLL 764
>gi|148694810|gb|EDL26757.1| mCG15924, isoform CRA_f [Mus musculus]
Length = 1099
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 405 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 464
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 465 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 510
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 511 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 559
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 560 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 619
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 620 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 679
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 680 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 739
Query: 370 VLNLL 374
+LNLL
Sbjct: 740 ILNLL 744
>gi|301788522|ref|XP_002929677.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Ailuropoda
melanoleuca]
Length = 1246
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRHI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|448111589|ref|XP_004201877.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
gi|359464866|emb|CCE88571.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
Length = 1225
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 196/379 (51%), Gaps = 42/379 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV+ ++ DEVHY++DI RG VWEE+II P ++ I LSATV N E A W+G+ K
Sbjct: 386 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPNHIKYILLSATVPNTFEFANWVGRTKQKDI 445
Query: 83 LITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG--GSR 139
+ S+ +RPVPL + K + +D + K S +E K +K GS
Sbjct: 446 FVISTPKRPVPLEIFIWAKNNMYKAVDSQRK------------FSETEFKKHKSALEGSN 493
Query: 140 RRNSRKHADMNS----------------NNIVTSFGQHQLSKNSINAIRRSQVPQVI--D 181
+ NSR + +++ NN+ S G+ +S+ NA R +
Sbjct: 494 K-NSRPNTVLSNGSRGGRGGTARGGNRGNNLSASRGRGNISQK--NAFMRDGPNKSTWSS 550
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYP 237
+ HLRS ++LP + F+F+++ C+ L+ + E SE+ + A+ R R
Sbjct: 551 LVQHLRSSNLLPVVIFVFSKKKCEEYADTLKGVDFCTGKEKSEIHNFIDKAVSRLRKEDR 610
Query: 238 DAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ + I+ LL +G+A HH G LPI K IE LF + LV+V+FATET A G+N+P RT
Sbjct: 611 ELPQIMKIRELLGRGIAVHHGGLLPIVKECIEILFSKSLVRVLFATETFAMGLNLPTRTV 670
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
V SS K G L E QM+GRAGRRG+D G V+++ + K + GV
Sbjct: 671 VFSSYRKHDGRGFRNLLPGEFTQMSGRAGRRGLDTTGTVIIMAYNEPLSPTDFKEITLGV 730
Query: 357 EP-LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 731 PTKLHSQFRLTYNMILNLL 749
>gi|296197760|ref|XP_002746412.1| PREDICTED: helicase SKI2W isoform 1 [Callithrix jacchus]
Length = 1246
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|148694808|gb|EDL26755.1| mCG15924, isoform CRA_d [Mus musculus]
Length = 1241
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 410 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 469
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 470 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAA 515
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 516 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 564
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 565 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 624
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 625 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 684
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 685 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 744
Query: 370 VLNLL 374
+LNLL
Sbjct: 745 ILNLL 749
>gi|355561557|gb|EHH18189.1| Helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|332245658|ref|XP_003271973.1| PREDICTED: helicase SKI2W [Nomascus leucogenys]
Length = 1218
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRREI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|47087109|ref|NP_998724.1| superkiller viralicidic activity 2-like (S. cerevisiae ) [Rattus
norvegicus]
gi|46237592|emb|CAE83970.1| superkiller viralicidic activity 2-like (S. cerevisiae) [Rattus
norvegicus]
Length = 1241
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ +
Sbjct: 410 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQI 469
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 470 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 515
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 516 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQLPVV 564
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 565 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 624
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 625 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 684
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 685 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 744
Query: 370 VLNLL 374
+LNLL
Sbjct: 745 ILNLL 749
>gi|301627725|ref|XP_002943020.1| PREDICTED: helicase SKI2W [Xenopus (Silurana) tropicalis]
Length = 1249
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 184/369 (49%), Gaps = 47/369 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+I K
Sbjct: 417 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVNIILLSATVPNTVEFADWIGRIKKKKI 476
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I+++RRPVPL Y T+ LLD G + Y
Sbjct: 477 YVISTTRRPVPLEHYLYTGNSQKTQNQFFLLLDALGGFQTKGY--------------YAA 522
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ S K++ +FG +K+ + + L+ RD LP +
Sbjct: 523 VEAKKERSSKYSQ--------TFG----AKHPHGVGPGHDKGTWLSLVQSLKIRDALPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVRE-PAIKGLL- 249
F F+R C+ L +L E SEV+ L R R A R+ P + +L
Sbjct: 571 VFTFSRTRCEQNATALSTVDLCSTAEKSEVQTYYTKCLSRLR----GADRQLPQVLHMLD 626
Query: 250 ---KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
+G+ HH+G LPI K +E LF RGLVK++FATET A G+NMPART V S+ K
Sbjct: 627 LLKRGIGIHHSGILPILKEVVEMLFSRGLVKILFATETFAMGVNMPARTVVFDSIRKHDG 686
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
S LT E QMAGRAGRRG+DN G V +L + + K++ L SQF
Sbjct: 687 SNFRDLTPGEYIQMAGRAGRRGLDNTGMVIILCKADVPEMSDLHKMMLGKPTQLQSQFRL 746
Query: 366 SYGMVLNLL 374
+Y M+LNLL
Sbjct: 747 TYSMILNLL 755
>gi|355762473|gb|EHH61971.1| Helicase SKI2W [Macaca fascicularis]
Length = 1246
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|296454181|ref|YP_003661324.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
longum subsp. longum JDM301]
gi|296183612|gb|ADH00494.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. longum JDM301]
Length = 863
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 147/410 (35%), Positives = 204/410 (49%), Gaps = 60/410 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGS 138
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGE 277
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R + RK + + K + RR V +D L L MLP I+FI
Sbjct: 278 ERPDKRK---GFGRGRGGKGAKDRAPKAERHTPRRWAV---VDELNFL---GMLPGIYFI 328
Query: 199 FNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIK 246
F+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 329 FSRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR----F 384
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 385 ALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDG 444
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQ 362
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL S
Sbjct: 445 TGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAASLSSKRVY----PLHSS 500
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
F ++ M +NLL N SD E AR ++QSF +
Sbjct: 501 FRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|344307274|ref|XP_003422307.1| PREDICTED: helicase SKI2W [Loxodonta africana]
Length = 1246
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSSKTQGELFLLLDSRGTFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHHGGPAQDRGVY---LSLLASLRARAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLQR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V ++ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDTMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|380788617|gb|AFE66184.1| helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|397523107|ref|XP_003831583.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W [Pan paniscus]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|149732068|ref|XP_001492630.1| PREDICTED: helicase SKI2W [Equus caballus]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|426352517|ref|XP_004043758.1| PREDICTED: helicase SKI2W isoform 1 [Gorilla gorilla gorilla]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|322689194|ref|YP_004208928.1| helicase [Bifidobacterium longum subsp. infantis 157F]
gi|320460530|dbj|BAJ71150.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
Length = 863
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 144/417 (34%), Positives = 203/417 (48%), Gaps = 74/417 (17%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLL-----DEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L E+ +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 --PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|384940060|gb|AFI33635.1| helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|431921548|gb|ELK18902.1| Helicase SKI2W [Pteropus alecto]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + + A R + L LR+R LP +
Sbjct: 522 VDAKKERMSKHAQ--------TFGAKQPTHHGGPAQDRGVY---LSLLAFLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ + L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHIFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMVDLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|332823591|ref|XP_001160927.2| PREDICTED: helicase SKI2W isoform 3 [Pan troglodytes]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|410213924|gb|JAA04181.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410249634|gb|JAA12784.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410290134|gb|JAA23667.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410347543|gb|JAA40743.1| superkiller viralicidic activity 2-like [Pan troglodytes]
Length = 1246
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|365991078|ref|XP_003672368.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
gi|343771143|emb|CCD27125.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
Length = 1310
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 197/388 (50%), Gaps = 39/388 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 453 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 512
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDGGSR 139
+I++ +RPVPL L+P++ + + + N K L STS +K + +
Sbjct: 513 YVISTPKRPVPLEINIWASKQLIPVISPQREFLDSNFKKHKELLSGSTSSMKAADNPKKQ 572
Query: 140 RRNSRKHAD--------MNSNNIVT-------------------SFGQHQLSKNSINAIR 172
NS++ NS + G ++ +A
Sbjct: 573 AANSKRSGQNGGGRGGSTNSRGGGQRGGNRGGNRGGLRGSRGAGAVGSNKRQFFQKSAPN 632
Query: 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF 232
+ P +++ L+++D+LP + F+F+++ C+ +LE N + E S+V + ++
Sbjct: 633 KKTWPDLVN---FLKAKDLLPMVVFVFSKKRCEEYADWLEGINFCNAKEKSQVHMFIENS 689
Query: 233 RILYPDAVRE-P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 287
RE P I+ LL +G+A HH G LPI K IE LF +G +KV+FATET A
Sbjct: 690 ITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAM 749
Query: 288 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
G+N+P RT V S + K +G LT E QMAGRAGRRG+D G V+++
Sbjct: 750 GLNLPTRTVVFSEIRKHDGTGLRDLTPGEFTQMAGRAGRRGLDKTGTVIVMSYTEPLQPA 809
Query: 348 CCKLLFAGVEP-LVSQFTASYGMVLNLL 374
K + G+ L SQF +Y M+LNLL
Sbjct: 810 SFKEVTLGIPTKLESQFRLTYNMILNLL 837
>gi|67968007|dbj|BAE00485.1| unnamed protein product [Macaca fascicularis]
Length = 1146
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 316 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 375
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 376 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 421
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 422 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 470
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 471 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 530
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 531 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 590
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 591 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 650
Query: 370 VLNLL 374
+LNLL
Sbjct: 651 ILNLL 655
>gi|348576448|ref|XP_003473999.1| PREDICTED: helicase SKI2W-like [Cavia porcellus]
Length = 1243
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV NA E A WIG++ +
Sbjct: 413 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIVLLSATVPNALEFADWIGRLKRRQI 472
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RP+PL Y T+ L LLD +G + Y
Sbjct: 473 YVISTLTRPIPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 518
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 519 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 567
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 568 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 627
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 628 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSAFR 687
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 688 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 747
Query: 370 VLNLL 374
+LNLL
Sbjct: 748 ILNLL 752
>gi|379058684|ref|ZP_09849210.1| DEAD/DEAH box helicase [Serinicoccus profundi MCCC 1A05965]
Length = 961
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 245/537 (45%), Gaps = 97/537 (18%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
M ++ L + +++DEVHYL+D RG VWEE+II+ P+ VQ+I LSATV+NA+E W
Sbjct: 131 MYAASPTLRGLGFVIMDEVHYLADRWRGAVWEEVIIHLPEAVQVISLSATVSNAEEFGDW 190
Query: 74 IGQIHGKT-----ELITSSRRPVPLTWYFSTKTALLPLL------DEKGKHMNRKLSLNY 122
+ Q+ G+ +I S RPVPL + L L G +++
Sbjct: 191 LRQVRGRGNPESLRVIVSEHRPVPLWQHMMVGQRLYDLFVTDGLRAAPGVDGTTRVNPEL 250
Query: 123 LQ-LSTSEVKPYKD-----------------------GGSRRRNSRKHADMNSNNIVTSF 158
L+ +S +E D G R +SR++ D +
Sbjct: 251 LEAISAAERSARADSGWRRDDPGGPRGRRGEPRGRGRSGQARGHSRRYDDARGSG----G 306
Query: 159 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFNRRGCDAAVQYL--EDCN 215
G S+ S+ S+ QVID L RD +LPAI FIF+R GCDAAVQ L
Sbjct: 307 GDAGFSRGSLPGGVASRA-QVIDRL----DRDALLPAITFIFSRAGCDAAVQQLLGRGTR 361
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPA----------IKGLLKGVAAHHAGCLPIWKS 265
L+ E + + AL R+ D PA ++GL +G AAHHAG LP+++
Sbjct: 362 LIPEDQGQTIR-ALVAERVAEVD----PADLGVLGYHDFVEGLSRGYAAHHAGMLPLFRE 416
Query: 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325
+EELF G V+ VFATETLA GINMPART VL L K +T E Q+ GRAG
Sbjct: 417 IVEELFTAGRVRSVFATETLALGINMPARTVVLEKLVKFNGEEHAPVTPAEYTQLTGRAG 476
Query: 326 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 385
RRGID GH V++ + L PL S F S M +NL+A
Sbjct: 477 RRGIDIEGHAVVLWRRGVDPMDVAGLASTRTYPLRSSFRPSSNMAVNLVA---------- 526
Query: 386 SDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 445
Q GR + A +L++ SF + ++ +I+ T+ L + D
Sbjct: 527 -------QYGR--DRAHELLQASFAQFQADRSVVGLT---TQIRHNTEALEGYAASMVCD 574
Query: 446 RKSRRLLSEAAYKEMANLQEEL-KAEKRFRTELRRRMELKRFSALKDILKDFENGHL 501
R ++E ++ +L + EK+ R + +R S + L+ E G +
Sbjct: 575 RGD--------FREYGRMRHQLSEVEKK----AARTRQAQRRSDIGQALESLEPGQV 619
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 717 KRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVL 776
+R+T R + + F RI +++ L + + + G+ I E +L A L
Sbjct: 763 RRVTHRTNTLAAT----FERICDLLGAMGYLSEDGREVTDQGQRLRRIYTELDLVAAESL 818
Query: 777 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
R L PA LAAV ++LV E +P T + V L E S + E+
Sbjct: 819 RRGTWRRLTPADLAAVVSTLVHE-------ARGDEPGDPPTPSVEVAEALGEMGSIWTEV 871
Query: 837 QE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
Q H + LD S MV WASG E++ L GD R ++ +DLL QI
Sbjct: 872 QAGKLAHNLTGDRELDPGISWMVHRWASGRGLEEVLRSGDLSAGDFVRRAKQVVDLLGQI 931
>gi|291395821|ref|XP_002714338.1| PREDICTED: superkiller viralicidic activity 2-like homolog
[Oryctolagus cuniculus]
Length = 1246
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 183/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPMHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|358056951|dbj|GAA97301.1| hypothetical protein E5Q_03979 [Mixia osmundae IAM 14324]
Length = 1184
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 131/372 (35%), Positives = 187/372 (50%), Gaps = 20/372 (5%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P + +I LSATV N E AGW+G+ K
Sbjct: 341 DVEWVIFDEVHYVNDLERGVVWEEVIIMLPDHIGVILLSATVPNTKEFAGWVGRTKRKDI 400
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + L ++D G + L + K + G
Sbjct: 401 YVISTLKRPVPLEHFLYAGRDLFKIVDSTGTFNGQGWKDAQQALKRKQEKEREAAGLPAP 460
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID-------TLW-----HLRSR 189
+R V + Q + +A + P+ I LW LR R
Sbjct: 461 GARGRGARGGTRGVGIVQRGQALGGASSARPAALAPRPIRPGPGADRNLWVHLVGSLRQR 520
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAIKG 247
D+LPA+ F F+++ C+ + + +L E SE+ L ++R R+ D +K
Sbjct: 521 DLLPAVIFTFSKKRCEENALSMPNTDLCTATEKSEIHLVVERSLGRLQEIDRTLPQILKV 580
Query: 248 ---LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
L KG+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR V +S K
Sbjct: 581 RSLLSKGIGVHHGGLLPIVKEIVEILFARGLVKILFATETFAMGVNMPARCVVFASTRKH 640
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--ECCKLLFAGVEPLVSQ 362
L + E QMAGRAGRRG+D G V++V E E + K++ L SQ
Sbjct: 641 DGRTFRDLLAGEYTQMAGRAGRRGLDATGCVIIVCNEAEPPETSDLHKMILGQPSKLTSQ 700
Query: 363 FTASYGMVLNLL 374
F +Y M+LNLL
Sbjct: 701 FRLTYSMILNLL 712
>gi|384201505|ref|YP_005587252.1| helicase [Bifidobacterium longum subsp. longum KACC 91563]
gi|338754512|gb|AEI97501.1| helicase [Bifidobacterium longum subsp. longum KACC 91563]
Length = 863
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 191/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLL-----DEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L E+ +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEYTEPEVLDLYRRDGNGEQATKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|298713164|emb|CBJ26920.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1408
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 145/428 (33%), Positives = 217/428 (50%), Gaps = 61/428 (14%)
Query: 16 SSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 74
S E+G L DV +V DE HY++D RGTVWEE +I CPK V ++ LSAT++N E+ W+
Sbjct: 482 SEETGELDDVFAVVFDEFHYMNDRDRGTVWEESVINCPKTVLMVALSATMSNVGEIKDWV 541
Query: 75 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN-YLQLSTSEVKPY 133
HG + L+ S RPVPL+ + + LL+ H N L+ Y Q + + +
Sbjct: 542 EHTHGASSLVVSDFRPVPLSLRINVE-----LLE---SHENDLLAAKRYSQRNDDDGR-- 591
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
GGS R + + + KN NA R+ VP + L +D+LP
Sbjct: 592 --GGSGRSSKYGRGGGGGGSRGYR---REARKNMRNAAYRA-VPSFPYLVRCLGRKDLLP 645
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL--LKG 251
AI FIF+R GCD A + + + ++ F D V + ++ L ++
Sbjct: 646 AIVFIFSRVGCDQAAKQVT------------TSVGVQFFWPCILDTVVDHFLQALDWMRP 693
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
C P L +R VVFATETLAAG+NMPAR V+++LSKR +G ++
Sbjct: 694 ARQGQRPCHPT-------LLRR---TVVFATETLAAGVNMPARATVITTLSKRIDTGIVK 743
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
L ++L QM GRAGRRG D+ G VVL+++ +E E +LL + ++ + SQF +SYGM +
Sbjct: 744 LNPSQLLQMGGRAGRRGKDSSGSVVLMRSRFEDCIEAHRLLLSPMDGIESQFKSSYGMAV 803
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 431
+L R + AR LVE+SFGN+V + A+ + Q++
Sbjct: 804 GVL-------------------RTRDMASARVLVEKSFGNFVRRKRVGPAQSRASEAQEK 844
Query: 432 TDVLTSEI 439
D L ++
Sbjct: 845 LDELKDQL 852
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 9/225 (4%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL---DINTQVIFP 756
++V ++I L+ + ++ K ++++ W EFL + V+ AL +++T F
Sbjct: 1116 ESVARLSKEIISLEEQVRQGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVSTPTAF- 1174
Query: 757 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
G +I ENELW+A+VL K +L L +LA++ ++++E + L+ ++Y PS
Sbjct: 1175 -GRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLF----TLYGPS 1229
Query: 817 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
V + L S E+Q VE P LD + G+VE WA+G W E++ +LD
Sbjct: 1230 EGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQ 1289
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 921
GDL R+LRR +++L QIP LP + L+ A A++ +DR P+S+
Sbjct: 1290 GDLCRILRRAMEMLRQIPVLPGLPAVLKDRARLAADSLDRFPVSD 1334
>gi|432089456|gb|ELK23398.1| Helicase SKI2W [Myotis davidii]
Length = 1245
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 415 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 474
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+++++ RPVPL Y T+ L LLD +G + Y
Sbjct: 475 YVVSTAARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGY--------------YAA 520
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 521 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLTSLRTRAQLPVV 569
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 570 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 629
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K +
Sbjct: 630 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGNAFR 689
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 690 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMVDLHRMMTGKPSQLQSQFRLTYTM 749
Query: 370 VLNLL 374
+LNLL
Sbjct: 750 ILNLL 754
>gi|23335111|ref|ZP_00120349.1| COG4581: Superfamily II RNA helicase [Bifidobacterium longum
DJO10A]
gi|189439330|ref|YP_001954411.1| superfamily II RNA helicase [Bifidobacterium longum DJO10A]
gi|419847674|ref|ZP_14370840.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|419854700|ref|ZP_14377481.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
gi|189427765|gb|ACD97913.1| Superfamily II RNA helicase [Bifidobacterium longum DJO10A]
gi|386410508|gb|EIJ25289.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|386417358|gb|EIJ31842.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
Length = 863
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|322691260|ref|YP_004220830.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
gi|419849901|ref|ZP_14372923.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
gi|320456116|dbj|BAJ66738.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
gi|386410855|gb|EIJ25627.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
Length = 863
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|291516885|emb|CBK70501.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum
F8]
Length = 863
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|239621488|ref|ZP_04664519.1| DSH domain-containing protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515949|gb|EEQ55816.1| DSH domain-containing protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 863
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|390604989|gb|EIN14380.1| antiviral helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 1256
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 189/385 (49%), Gaps = 46/385 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 406 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKRKDI 465
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEK-----------GKHMNRK-------LSLNYL 123
+I++++RPVPL Y + + +LD K + + RK L +
Sbjct: 466 YVISTAQRPVPLEHYLYSGREMHKVLDAKRNFLAQGYKDAAEALRRKQDKEREAAGLGPV 525
Query: 124 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ------HQLSKNSINAIRRSQVP 177
Q + P + G N+++ A S G HQ K+
Sbjct: 526 QRTGGRGAPSRGGQRGGANAQRGAPARGRGTAPSRGGPPSRTFHQADKS----------- 574
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP 237
+ L HL+ + +LP + F F+++ C+ L + +L E SEV +A+++
Sbjct: 575 LYVHLLGHLKKKGLLPVVVFTFSKKRCEENAATLTNADLCTAVEKSEVHIAIEKALSRLK 634
Query: 238 DAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
+ R+ P I L +G+ HH G LPI K +E LF RGLVK++FATET A G+NMP
Sbjct: 635 GSDRKLPQIARMRDLLSRGIGVHHGGLLPIVKEVVELLFARGLVKILFATETFAMGVNMP 694
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT---PYEGAEECC 349
AR V S + K ++ E QMAGRAGRRG+D G V++ P +G
Sbjct: 695 ARCVVFSGIRKHDGRSFREILPGEYTQMAGRAGRRGLDATGTVIVNANDDLPEQGI--LH 752
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLL 374
++ L SQF +Y M+LNLL
Sbjct: 753 HMMLGQPSKLQSQFRLTYNMILNLL 777
>gi|380024872|ref|XP_003696213.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Apis florea]
Length = 1225
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 221/436 (50%), Gaps = 53/436 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HG 79
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N A W+G+
Sbjct: 390 LRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTIVMLSATVPNPLVFADWVGRXKKK 449
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG--- 136
KT +I++ +RPVPL Y T T GK + K +L L S + DG
Sbjct: 450 KTYVISTLKRPVPLQHYLYTGT--------DGKTKDDK----FLVLGESG-QFLLDGWYK 496
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDM 191
++ NS+ + N + V HQ P+ LW HL++++M
Sbjct: 497 ATKFXNSKNQVNKNIKD-VKKLSMHQ-----------QMTPKQEQVLWSAFISHLKTQNM 544
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK-RFRILYPDAVREPAI----K 246
LP + F+ +R+ CD + L + +L E E +EL + R L + P + +
Sbjct: 545 LPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTIELFFQNNIRHLKGTDRQLPQVLMMQE 604
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART V S+ K
Sbjct: 605 LLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVVFDSIKKYDG 664
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ L +E QMAGRAGRRG D G V V+ +T E ++ + L S+F
Sbjct: 665 NNFRILYPSEYVQMAGRAGRRGHDTTGMVIVMCRTSVPHFNELKNMMCGQAQNLESKFKV 724
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
+Y MVLNL NES ++A+ RS +E+ ++ Q+ NY + ++EL
Sbjct: 725 TYSMVLNL-------RRLNESVTVEAMMR-RSFKESPVVINQN--NYKMQ--LQEVENEL 772
Query: 426 CKIQKETDVLTSEISD 441
K+ TD L ++SD
Sbjct: 773 SKLPPLTD-LQKKLSD 787
>gi|317483253|ref|ZP_07942248.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915322|gb|EFV36749.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
Length = 863
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 55/379 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 158 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 217
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 218 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 268
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 269 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 321
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 322 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 381
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 382 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 437
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAG 355
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 438 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY-- 495
Query: 356 VEPLVSQFTASYGMVLNLL 374
PL S F ++ M +NLL
Sbjct: 496 --PLHSSFRPTFNMAVNLL 512
>gi|395832055|ref|XP_003789093.1| PREDICTED: helicase SKI2W [Otolemur garnettii]
Length = 1246
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 182/365 (49%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q A R + L LR R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPMHQGGPAQDRGVY---LSLLASLRVRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|419853041|ref|ZP_14375886.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 2-2B]
gi|386409182|gb|EIJ24050.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 2-2B]
Length = 787
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 187/375 (49%), Gaps = 47/375 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 82 VILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVIS 141
Query: 87 SRRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKD 135
RPVPL + T+ +L L G +N +L QL
Sbjct: 142 EHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD--------- 192
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDM 191
R+ +R+ + + +A + P+ V+D L L M
Sbjct: 193 ----RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GM 245
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDA 239
LP I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 246 LPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSK 305
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 306 FR----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVE 361
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
L K +G + LT E Q+ GRAGRRGID GH ++V L V PL
Sbjct: 362 KLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVYPL 421
Query: 360 VSQFTASYGMVLNLL 374
S F ++ M +NLL
Sbjct: 422 HSSFRPTFNMAVNLL 436
>gi|449297011|gb|EMC93030.1| hypothetical protein BAUCODRAFT_37952 [Baudoinia compniacensis UAMH
10762]
Length = 1288
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 192/399 (48%), Gaps = 54/399 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +ICLSATV N E A W+G+ K
Sbjct: 419 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLICLSATVPNTYEFASWVGRTKKKDI 478
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLSLNYLQLSTSE----- 129
+I++ +RPVPL Y + ++D EKG K N ++ L+ +
Sbjct: 479 YVISTPKRPVPLEHYLWADKKMFKIVDANKNFIEKGWKDANDAMTGRDKVLAAEQKAKEK 538
Query: 130 -------------------------VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 164
P + GG ++R + A+ NI +
Sbjct: 539 EDAAVAAGRGGRGGRGQGGRGQQQRGGPNQRGGPQQRGRGQVANRGQGNIART------- 591
Query: 165 KNSINAIRRSQVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMS 223
+Q + + + HLR ++LP FIF+++ C+ + L + + E S
Sbjct: 592 GRGGGRTTAAQDRNIWVHLVQHLRKEELLPCCIFIFSKKRCEESADALANLDFCTASERS 651
Query: 224 EVELAL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
+ + L K L PD + P I+ L +G+A HH G LPI K +E LF + LVKV
Sbjct: 652 AIHMILEKSLARLKPDDRQLPQIRRIRELLSRGIAVHHGGLLPIVKECVEILFAKTLVKV 711
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+FATET A G+N+P RT V S K L E QMAGRAGRRG+D G+V+LV
Sbjct: 712 LFATETFAMGLNLPTRTVVFSGFRKYDNKAFRDLLPGEYTQMAGRAGRRGLDTVGYVILV 771
Query: 339 QTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNLL 374
+ A +L + L SQF +Y M+LNLL
Sbjct: 772 SPGADEAPPAARLRQMMLGDPTKLRSQFRLTYNMILNLL 810
>gi|403511534|ref|YP_006643172.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402799821|gb|AFR07231.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 947
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 209/445 (46%), Gaps = 57/445 (12%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W
Sbjct: 131 LYEGSSTLGGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRMVALSATVSNAEEFGEW 190
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPL-LDEKGKHMNRKLSLNYLQLSTSEVKP 132
+ Q+ G T +I +RPVPL + + L +D++ + + S + +
Sbjct: 191 LQQVRGDTTIIVDEKRPVPLWQHVMVGKRMHDLFVDQEAESTEEGDEGSEGGRSRRKRER 250
Query: 133 YKDGGSRRRN--------------SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV-- 176
+ R R SR + + + +H S+ N R++
Sbjct: 251 RRSHQQRPREIRVGGRTLLINPFLSRAAEEDARTTQLANRRRHPQSRARGNVRPRTRFAP 310
Query: 177 ---PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DECEMSE----- 224
P +I+ L + +LPAI FIF+R GCD AV+ L+ DE ++
Sbjct: 311 PSRPMIIE---ELDAEGLLPAITFIFSRAGCDDAVRQCVASGLVLTTPDEADVIREYAES 367
Query: 225 --VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
++ +L D+ ++ L G+A+HHAG LP +K +E LF RGL++ VFAT
Sbjct: 368 RCADIPRADLNVLGFDSW----LRALESGIASHHAGMLPTFKEVVEHLFSRGLIRAVFAT 423
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ETLA GINMPART V+ L K LT E Q+ GRAGRRGID GH V++
Sbjct: 424 ETLALGINMPARTVVIEKLDKWNGETHASLTPGEYTQLTGRAGRRGIDVEGHAVVIWQAG 483
Query: 343 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 402
E L PL S F SY M +NL+ Q GR +R
Sbjct: 484 TDPESVASLAGTRTYPLNSSFQPSYNMAVNLVG-----------------QVGR--RRSR 524
Query: 403 KLVEQSFGNYVGSNVMLAAKDELCK 427
++E SF + ++ +L K
Sbjct: 525 AMLEASFAQFQADRAVVGLVKKLRK 549
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 7/210 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ R K + L +R+E + F R+ V+ + L ++ + G A I
Sbjct: 736 ERYHRTKKDTDALRRRVEGRSHVISRTFDRVCGVLEDLEYLSGDS--VSEDGGRLAKIYS 793
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L +A LR + DL P +AAV ASLV E + ++ P V + +
Sbjct: 794 ELDLLVAECLRRGVWKDLTPVDMAAVAASLVYEARR----GDDPYPRVPEGRVEEALQEM 849
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
E++ +H V D F WA G ++ + GD R +
Sbjct: 850 LRLWGELNEVETRHRVSFLRQPDLGFVWTAHRWARGDRLDAILSRTEMTAGDFVRTAKML 909
Query: 887 IDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
+D+L QI + DQ+++ NA A++++ R
Sbjct: 910 VDMLGQI-AVAATDQQVRSNARKAADLVRR 938
>gi|448114139|ref|XP_004202502.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
gi|359383370|emb|CCE79286.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
Length = 1224
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 191/375 (50%), Gaps = 35/375 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P ++ I LSATV N E A W+G+ K
Sbjct: 386 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPNHIKYILLSATVPNTFEFANWVGRTKQKDI 445
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG-GSRR 140
+I++ +RPVPL + K + +D + K S +E K +K
Sbjct: 446 YVISTPKRPVPLEIFIWAKNNMFKAVDSQRK------------FSETEFKKHKSALEGNN 493
Query: 141 RNSRKHADMNSN---------------NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 185
+NSR + +++ N+ S G+ +S+ S + H
Sbjct: 494 KNSRPNTVLSNGSRGGRGGTARGGNRGNLSASRGRGNISQKSAFMRDGPNKGTWSSLVQH 553
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVR 241
LRS ++LP + F+F+++ C+ L+ + E SE+ + A+ R R + +
Sbjct: 554 LRSSNLLPVVIFVFSKKRCEEYADTLKGIDFCTGKEKSEIHNFIDKAVSRLRKEDRELPQ 613
Query: 242 EPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
I+ LL +G+A HH G LPI K IE LF + LV+V+FATET A G+N+P RT V SS
Sbjct: 614 IMKIRELLGRGIAVHHGGLLPIVKECIEILFSKSLVRVLFATETFAMGLNLPTRTVVFSS 673
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-L 359
K G L E QM+GRAGRRG+D G V+++ + K + GV L
Sbjct: 674 YRKHDGRGFRNLLPGEFTQMSGRAGRRGLDTTGTVIIMAYNDPLSPTDFKEITLGVPTKL 733
Query: 360 VSQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 734 HSQFRLTYNMILNLL 748
>gi|405981020|ref|ZP_11039349.1| hypothetical protein HMPREF9240_00355 [Actinomyces neuii BVS029A5]
gi|404393039|gb|EJZ88096.1| hypothetical protein HMPREF9240_00355 [Actinomyces neuii BVS029A5]
Length = 896
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 230/488 (47%), Gaps = 94/488 (19%)
Query: 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 79
L + V+VLDEVHYL+D RG VWEE+I++ P+EVQII +SATV+NA+E W+ + G
Sbjct: 154 ALTGLGVVVLDEVHYLADRFRGPVWEEVILHTPEEVQIISISATVSNAEEFGKWLEEARG 213
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ S +RP+PL + L L Y+ G +R
Sbjct: 214 DCAVVVSEQRPIPLKQHMLVGDRLYDL--------------------------YRRGSNR 247
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVI--DTLWHLRSRDMLPAI 195
N+ +T +A+ RS + P+V D + L D+LPAI
Sbjct: 248 -----------PNSALT------------DAVARSLERRPRVFPEDNMLTLAKHDLLPAI 284
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----------- 244
+FIF+R GCD AV Y C L + ++ + + +I+ R PA
Sbjct: 285 FFIFSRAGCDRAVSY---C-LRAKISITTPDQRRRLAQIVEDVEDRIPAEDHAVVGLDKW 340
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+ LL G AAHH G LP K +E F GL+ VFATETLA GINMPAR+ V++ L K
Sbjct: 341 ARALLSGYAAHHTGLLPALKEAVELAFSEGLLGAVFATETLALGINMPARSVVITQLRKW 400
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE-GAEECCKLLFAG--VEPLVS 361
S + LT + Q+ GRAGRRGID GH V+ PY+ GAE A PL+S
Sbjct: 401 NGSDHVMLTPGQYTQLTGRAGRRGIDVVGHAVV---PYQIGAEPAIVASLASKRTYPLIS 457
Query: 362 QFTASYGMVLNLL------AGAKVMH--LSNESDDMKALQ---AGRSLEEARKLVEQSFG 410
F +Y M + LL A M + D+KA + RS +E E
Sbjct: 458 AFRPTYSMAVGLLEHMDLEAAKATMERSFAQFQSDLKARKNALKARSWKEQMDAAEGDLH 517
Query: 411 NYVGSNVMLA-AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 469
G A A+ EL + QK ++ + A ++R+++ E ++A +LK
Sbjct: 518 CSRGDFKEYALARQELSRAQKS----AAKALNRARHARTRQVILELDRGDVA----QLKI 569
Query: 470 EKRFRTEL 477
KRFR L
Sbjct: 570 GKRFRAAL 577
>gi|449015367|dbj|BAM78769.1| probable viral mRNA translation inhibitor SKI2 [Cyanidioschyzon
merolae strain 10D]
Length = 1490
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 185/367 (50%), Gaps = 40/367 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV NA E A W+G+ +
Sbjct: 588 DVEWVIFDEVHYVNDEERGVVWEEVIILLPEHVNIIMLSATVPNAQEFADWVGRCKQRPV 647
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+IT+S RPVPL Y K L+ + + +G +++ YK
Sbjct: 648 YVITTSHRPVPLQHYIYAKNDLILVKNARGDFLSQG---------------YKAA----- 687
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
D+ + + L+ I P + LR R++LPA+ F F+R
Sbjct: 688 -----QDVERELVAKRGAKAHLAPAGILG-----RPAWGTLVQFLRKRELLPAVVFCFSR 737
Query: 202 RGCDAAVQYLEDCNLLDECEMSE------VELALKRFRILYPDAVREPAIKGLL-KGVAA 254
+ C+ A L NL + VE AL R + + ++ LL +G+
Sbjct: 738 KRCEEAADSLGTLNLHQQNPGEAHRIHVVVESALSRLQAADRRVPQIQRVRDLLHRGIGI 797
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LPI K E LFQRGLV+V+FATET A G+NMPART V S + K L+
Sbjct: 798 HHAGLLPIVKEMTEILFQRGLVRVLFATETFAMGVNMPARTVVFSGIRKHDGRQYRLLSP 857
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC-CKLLFAGVEP-LVSQFTASYGMVLN 372
E QM+GRAGRRG+D G V+L + E E K GV P L SQF SY M+LN
Sbjct: 858 GEYTQMSGRAGRRGLDAYGIVILFFSVGELPTELDLKRTMTGVPPRLSSQFRLSYNMILN 917
Query: 373 LLAGAKV 379
L+ +V
Sbjct: 918 LIRTERV 924
>gi|395533841|ref|XP_003768961.1| PREDICTED: helicase SKI2W [Sarcophilus harrisii]
Length = 1249
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 419 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRHL 478
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I+++ RPVPL + T+ L LLD +G + Y
Sbjct: 479 YVISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGVFHTKGY--------------YAA 524
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ + KHA +FG Q R + L LRSR LP +
Sbjct: 525 VEAKKERTSKHAQ--------TFGAKQPMHQGGPGQDRGIY---LSLLASLRSRAQLPVV 573
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 574 VFTFSRGRCDEQASGLSSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 633
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K +
Sbjct: 634 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGATFR 693
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 694 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMLGKPSQLQSQFRLTYTM 753
Query: 370 VLNLL 374
+LNLL
Sbjct: 754 ILNLL 758
>gi|126309591|ref|XP_001369051.1| PREDICTED: helicase SKI2W [Monodelphis domestica]
Length = 1249
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 184/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 419 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRHL 478
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I+++ RPVPL + T+ L LLD +G + Y
Sbjct: 479 YVISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGIFHTKGY--------------YAA 524
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ + KHA +FG Q R + L LRSR LP +
Sbjct: 525 VEAKKERTSKHAQ--------TFGAKQPMHQGGPGQDRGIY---LSLLASLRSRAQLPVV 573
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 574 VFTFSRGRCDEQASGLSSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRR 633
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K +
Sbjct: 634 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGATFR 693
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 694 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMLGKPSQLQSQFRLTYTM 753
Query: 370 VLNLL 374
+LNLL
Sbjct: 754 ILNLL 758
>gi|426250501|ref|XP_004018974.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W [Ovis aries]
Length = 1245
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 182/365 (49%), Gaps = 39/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R ++ +L R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVYLSLLASL----RRPRLPVV 569
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----IKGLL-K 250
F F+R CD L +L E SE+ L L+R + R P + LL +
Sbjct: 570 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRRPPQVLHMSELLHR 629
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 630 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 689
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 690 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 749
Query: 370 VLNLL 374
+LNLL
Sbjct: 750 ILNLL 754
>gi|407646515|ref|YP_006810274.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407309399|gb|AFU03300.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 900
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 196/406 (48%), Gaps = 48/406 (11%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S L + +V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W
Sbjct: 120 LYASSDALRGLSYVVMDEVHYLADRFRGAVWEEVILHLPPDVRLVSLSATVSNAEEFGAW 179
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RPVPL + + L D ST +
Sbjct: 180 METVRGDTAVVVDETRPVPLWQHVMVGRRMFDLFDTD---------------STDQKVLV 224
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 193
+ R R+ AD +N+ + + R +V L L +LP
Sbjct: 225 DEDLVRFIKQRELAD-RANSWGGPRNGRGGPRRDFRPLPRPEV------LAKLDEEGLLP 277
Query: 194 AIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IK 246
AI FIF+R GCD A+ Q L +L + + +EV+ + + P A E +
Sbjct: 278 AITFIFSRAGCDGALAQCLRSRLDLGRDEDRAEVDAIVDKHTGDLPKADLEVLGYWEWRE 337
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L +G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART VL L K
Sbjct: 338 ALHRGLAAHHAGMLPAFRHTVEELFVNGLVRAVFATETLALGINMPARTVVLERLVKFNG 397
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
+LT E Q+ GRAGRRGID GH V++ P L PL S F
Sbjct: 398 ESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRSSFRPG 457
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Y M +NL+ D M A E+R L+E+SF +
Sbjct: 458 YNMSINLI------------DRMGA-------AESRALLERSFAQF 484
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL ++ + +++ S + F RI ++ E R +++V G A I
Sbjct: 684 ERYNRLLRETETMRQKVAATTNSLARTFDRILGLLQE-RGFVHDSEVTAD-GRRLARIYS 741
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEP-STTVINVINV 825
E++L +A LR + L PA+LA V + LV E + + S P V I V
Sbjct: 742 ESDLLVAECLRQGLWRGLGPAELAGVVSILVFESRQDGGYLGVSGPTAPIRRAVGETIRV 801
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLA 880
E RS + +H + D F V WA G E ++ L GD
Sbjct: 802 WSELRSD----EARHKLPPTREPDLGFVTGVHKWARGDGLAESLLASGDQAAPLSAGDFV 857
Query: 881 RLLRRTIDLLAQI 893
R R+ IDLL QI
Sbjct: 858 RWCRQVIDLLDQI 870
>gi|395737037|ref|XP_003776851.1| PREDICTED: helicase SKI2W isoform 2 [Pongo abelii]
Length = 1144
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 184/365 (50%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 316 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 375
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G K Y
Sbjct: 376 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAF---------------HTKGYYA 420
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
++N +HA +FG Q + A R + L LR+R LP +
Sbjct: 421 AVEAKKNE-QHAQ--------TFGAKQPTHPVGPAQDRGVY---LSLLASLRTRAQLPVV 468
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 469 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 528
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 529 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 588
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 589 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 648
Query: 370 VLNLL 374
+LNLL
Sbjct: 649 ILNLL 653
>gi|328784274|ref|XP_397131.4| PREDICTED: helicase SKI2W [Apis mellifera]
Length = 1225
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 226/446 (50%), Gaps = 73/446 (16%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N A W+G+ K
Sbjct: 390 LRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTIVMLSATVPNPLVFADWVGRTKKK 449
Query: 81 -TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
T +I++ +RPVPL Y T T GK + K +L L S + DG +
Sbjct: 450 KTYVISTLKRPVPLQHYLYTGT--------DGKTKDDK----FLVLGESG-QFLLDGWYK 496
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSIN----AIRRSQVPQVIDTLW-----HLRSRD 190
NS+ NS N Q++KN + +I + P+ LW HL++++
Sbjct: 497 ATNSK-----NSKN--------QVNKNIKDVKKISIHQQMTPKQEQVLWSAFISHLKTQN 543
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG--- 247
MLP + F+ +R+ CD + L + +L E E + R + + +R +KG
Sbjct: 544 MLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTI-------RAFFQNNIRH--LKGTDR 594
Query: 248 -----------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART
Sbjct: 595 QLPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTV 654
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAG 355
V S+ K + L +E QMAGRAGRRG D G V+++ +T E ++
Sbjct: 655 VFDSIKKYDGNNFRILYPSEYVQMAGRAGRRGHDTTGMVIIMCRTSVPHFNELKNMMCGQ 714
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
+ L S+F +Y MVLNL NES ++A+ RS +E+ ++ Q+ NY
Sbjct: 715 AQNLESKFKVTYSMVLNL-------RRLNESVTVEAMMR-RSFKESPVVINQN--NYKMQ 764
Query: 416 NVMLAAKDELCKIQKETDVLTSEISD 441
+ ++EL K+ TD L ++SD
Sbjct: 765 --LQEVENELSKLPPLTD-LQKKLSD 787
>gi|221484584|gb|EEE22878.1| DEAD/DEAH box helicase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1329
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 194/378 (51%), Gaps = 25/378 (6%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQREVF 623
Query: 84 -ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYKDG 136
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 624 TLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPSSA 683
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDMLP 193
R R + A S+ HQ SK + A ++++ ++ + L + LP
Sbjct: 684 AQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNELP 735
Query: 194 AIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK---GL 248
+ F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+ GL
Sbjct: 736 VVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVCGL 795
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 796 IHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDGQ 855
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F +
Sbjct: 856 RSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFRLT 915
Query: 367 YGMVLNLLAGAKVMHLSN 384
Y +L L A + M +++
Sbjct: 916 YQTLLLLAARSHSMSMTS 933
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 739 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 798
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 853
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPVE------QVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 907
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|237839813|ref|XP_002369204.1| DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii
ME49]
gi|211966868|gb|EEB02064.1| DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii
ME49]
Length = 1329
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 194/378 (51%), Gaps = 25/378 (6%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQREVF 623
Query: 84 -ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYKDG 136
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 624 TLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPSSA 683
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDMLP 193
R R + A S+ HQ SK + A ++++ ++ + L + LP
Sbjct: 684 AQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNELP 735
Query: 194 AIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK---GL 248
+ F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+ GL
Sbjct: 736 VVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVCGL 795
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 796 IHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDGQ 855
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F +
Sbjct: 856 RSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFRLT 915
Query: 367 YGMVLNLLAGAKVMHLSN 384
Y +L L A + M +++
Sbjct: 916 YQTLLLLAARSHSMSMTS 933
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 739 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 798
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 853
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPVE------QVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 907
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|297677763|ref|XP_002816718.1| PREDICTED: helicase SKI2W isoform 1 [Pongo abelii]
Length = 1244
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 184/365 (50%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G K Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAF---------------HTKGYYA 520
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
++N +HA +FG Q + A R + L LR+R LP +
Sbjct: 521 AVEAKKNE-QHAQ--------TFGAKQPTHPVGPAQDRGVY---LSLLASLRTRAQLPVV 568
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 569 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 628
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 629 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 688
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 689 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 748
Query: 370 VLNLL 374
+LNLL
Sbjct: 749 ILNLL 753
>gi|221504778|gb|EEE30443.1| DEAD/DEAH box helicase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1329
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 194/378 (51%), Gaps = 25/378 (6%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQREVF 623
Query: 84 -ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYKDG 136
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 624 TLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPSSA 683
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDMLP 193
R R + A S+ HQ SK + A ++++ ++ + L + LP
Sbjct: 684 AQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNELP 735
Query: 194 AIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK---GL 248
+ F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+ GL
Sbjct: 736 VVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVCGL 795
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 796 IHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDGQ 855
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F +
Sbjct: 856 RSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFRLT 915
Query: 367 YGMVLNLLAGAKVMHLSN 384
Y +L L A + M +++
Sbjct: 916 YQTLLLLAARSHSMSMTS 933
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 739 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 798
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 853
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPVE------QVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 907
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|170590328|ref|XP_001899924.1| symbol [Brugia malayi]
gi|158592556|gb|EDP31154.1| symbol, putative [Brugia malayi]
Length = 1052
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 180/356 (50%), Gaps = 37/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H + +I
Sbjct: 259 VIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPVHVIY 318
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + L +++ +G K +
Sbjct: 319 TDYRPVPLQHFIYPXGGSGLYEVVNMQGIFREDKFT------------------------ 354
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
MN + V GQ +++ S P V++ + L+ RDM+P I F F+R+
Sbjct: 355 ---EAMNVLSQVGDAGQGGINRGKKGGT--SGTPHVVNIIRTLKERDMIPVIIFSFSRKE 409
Query: 204 CDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAG 258
C+A + + E E ++V E+ + +L + + P I LL+G+ HH+G
Sbjct: 410 CEAYATQMTSLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGVHHSG 469
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS E
Sbjct: 470 LLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEYI 529
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNLL
Sbjct: 530 QMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNLL 585
>gi|156084552|ref|XP_001609759.1| helicase with zinc finger motif protein [Babesia bovis T2Bo]
gi|154797011|gb|EDO06191.1| helicase with zinc finger motif protein, putative [Babesia bovis]
Length = 1113
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 185/357 (51%), Gaps = 44/357 (12%)
Query: 26 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 85
V++ DEVHY++D RG VWEE+ I PK +Q++ LSATV N E A WIG I + E+IT
Sbjct: 319 VVIFDEVHYINDFQRGVVWEEVFIMLPKSIQLVMLSATVPNYAEFADWIGAIMER-EVIT 377
Query: 86 --SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
++RRPVPL + + LLD KG N+ N ++S+ G S +R
Sbjct: 378 IVTTRRPVPLVHFMYIYNRIFLLLDNKGV-FNKDAYHNMYKISSQ-----NKGSSIKR-- 429
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
T+F + QV ++ + HL LP + F F+R
Sbjct: 430 ------------TTF--------------KGQVQKLQRLIRHLEMTQKLPVVLFCFSRAK 463
Query: 204 CDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-----PAIKGLLKGVAAHHA 257
C++ + + + NL + + S++ + LK + R+ IK L +G+ HH+
Sbjct: 464 CESYAREMPNLNLNSNHVQRSKIHIFLKESLSSISEDDRDLMQVKSIIKLLYRGIGVHHS 523
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP+ K +E LF RGL+KV+FATET A G+NMPAR+ + +S+ K LT++E
Sbjct: 524 GLLPLMKEIVEILFSRGLIKVLFATETFAMGVNMPARSVIFTSIHKHDGQKTRHLTASEY 583
Query: 318 FQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QMAGRAGRRG+D+ G V + ++ ++F L S+F +Y M+L +
Sbjct: 584 TQMAGRAGRRGLDSFGSVYIFCPDDPPDLQDLTTMMFEKSTKLESKFRITYNMLLQV 640
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 27/225 (12%)
Query: 706 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 765
+E+++ + +R+T +++ S + E + V+ + LD N + G A +
Sbjct: 891 QERVESCRNELERITSLLKEESLSSYDEMVAKVEVLKQLDFLDENGKPTVK-GRIATYLT 949
Query: 766 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 825
+E+ L + +L DL+P + AA+ ++ V N+ S P V +
Sbjct: 950 TGDEITLTETITQNVLNDLEPEECAAILSAFV---------HNDRS---PEKEVPSPTAA 997
Query: 826 LDEHRSSFLELQEKHGV------------EIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+ + R L+L K V + + S ++ WA G + E+M
Sbjct: 998 IQKARDMVLDLHSKVDVVQRALNVVVSREDHSALCNFSLSYVIYQWAIGTPFSEIMQYTD 1057
Query: 874 LDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 916
L +G + R + R +L +I ++ ++ DQ LQ SN + R
Sbjct: 1058 LQEGHIVRAITRLDELCRKIGQVANINGDQALQSKIEKVSNSIKR 1102
>gi|290977274|ref|XP_002671363.1| predicted protein [Naegleria gruberi]
gi|284084931|gb|EFC38619.1| predicted protein [Naegleria gruberi]
Length = 1130
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 34/366 (9%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DEVHY+ D RG VWEE +I P V+ + LSAT+ NA E AGWI ++ G+
Sbjct: 278 LNEVQWVIFDEVHYMRDKERGVVWEETLILLPNSVKYVFLSATMPNATEFAGWIAKLKGQ 337
Query: 81 -TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y + P + +G H+ + T + +K
Sbjct: 338 PVHVVYTDYRPTPLQHY------IYP-VGGQGIHL-------VVDKHTFKQDNWKKAVEE 383
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT-----LWHLRSRDMLPA 194
N+ K+ VTS G + NS + + +DT + + R+ P
Sbjct: 384 LNNASKN--------VTSGGSGSGNVNSSGKVSGGDRKKRVDTSLVKLVNMIMKRNFQPV 435
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL---- 249
I F F+R+ C+ L N DE EMS V E+ L + + P ++ +L
Sbjct: 436 IVFSFSRKECETRAVSLSKSNFNDEEEMSLVAEVFNNAIDSLSDEDRKLPQVETMLPLLQ 495
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KG+ HH+G LPI K IE LFQ GL+KV+FATET A G+NMPA+T + + + K
Sbjct: 496 KGIGVHHSGLLPIMKEVIEILFQEGLIKVLFATETFAMGLNMPAKTVLFTGIEKYDGQIT 555
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYG 368
+LTS E QM+GRAGRRG+D++G V+L+ + EE K L G+ + L S F SY
Sbjct: 556 RRLTSGEYIQMSGRAGRRGLDDKGIVILIMDDPDLREEDAKQLMNGIADCLNSSFHLSYY 615
Query: 369 MVLNLL 374
MVLNLL
Sbjct: 616 MVLNLL 621
>gi|297819300|ref|XP_002877533.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp.
lyrata]
gi|297323371|gb|EFH53792.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp.
lyrata]
Length = 1369
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 30/378 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+ K
Sbjct: 478 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEI 537
Query: 83 LIT-SSRRPVPL--TWYFSTK-------TALLPLLDEKGKHMNRKLSLNYLQLSTSEV-- 130
+T +++RPVPL ++S + +P + K +K + N + ++ +
Sbjct: 538 RVTGTTKRPVPLEHCLFYSGELYKVCENEVFIPKGIKDAKDSQKKKTSNAVSVAPKQYTG 597
Query: 131 -KPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHL 186
++DG S++ + N ++ G+ S NS N A RRS + + L
Sbjct: 598 SSAHQDGNKSQKHEAHSRGKQNKHSSAKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKL 657
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPDA 239
+ +LP + F F++ CD L +L E SE+ L K F L P
Sbjct: 658 SKKSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQV 717
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 718 LRVQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFD 775
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGV 356
+L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 776 ALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVIVGSA 833
Query: 357 EPLVSQFTASYGMVLNLL 374
L SQF +Y M+L+LL
Sbjct: 834 TRLESQFRLTYIMILHLL 851
>gi|229820554|ref|YP_002882080.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
gi|229566467|gb|ACQ80318.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
12333]
Length = 933
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 209/437 (47%), Gaps = 75/437 (17%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S D + +V+DEVHYL+D RG+VWEE+II +V+++ LS
Sbjct: 119 VVVMTTEVLRNMIYAGSPTLDGLRYVVMDEVHYLADRFRGSVWEEVIILLAADVRLVSLS 178
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E W+ + G T ++ S RPVPL W +HM + +
Sbjct: 179 ATVSNAEEFGQWLETVRGDTAVVVSEHRPVPL-W----------------QHM--MVRND 219
Query: 122 YLQLSTSEVKPYKDGG--------------SRRRNSRKHADMNSNNIVTSFGQHQLSKNS 167
L L +S+V P G + R S A + +
Sbjct: 220 VLDLYSSKVDPTDPGAHPPINPDILEAVRRAERTGSGSGAPHRARRGRGGRSTRDARRTG 279
Query: 168 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
+R ++ P V+D L +LPAI F+F+R GC+ AV + + E +
Sbjct: 280 HQQVRPARRPVVVD---RLDREGLLPAIVFVFSRAGCEDAVAAVVGSGITLTTEEEQ--- 333
Query: 228 ALKRFR-ILYPDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
+R R I+ PA + L +GVAAHHAG LP++K +E LF GL
Sbjct: 334 --RRIREIVEVRCAALPAEDLDVLGFWQFARALERGVAAHHAGLLPVFKETVEALFSAGL 391
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
VKVVFATETLA GINMPAR+ VL L K + +++ E Q+ GRAGRRGID GH
Sbjct: 392 VKVVFATETLALGINMPARSVVLERLVKWDGREHVAVSAGEYTQLTGRAGRRGIDVEGHA 451
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
V++ L PL S F +Y M +NL+ L++G
Sbjct: 452 VVLYASGTDPVAVAGLASRRTYPLRSSFRPTYNMAVNLV-----------------LRSG 494
Query: 396 RSLEEARKLVEQSFGNY 412
R++ AR+++E SF +
Sbjct: 495 RAM--AREVLETSFAQF 509
>gi|345569679|gb|EGX52544.1| hypothetical protein AOL_s00043g38 [Arthrobotrys oligospora ATCC
24927]
Length = 1244
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 187/383 (48%), Gaps = 36/383 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 394 DVEFVIFDEVHYVNDQERGVVWEEVIIMLPDHVNLILLSATVPNTQEFASWVGRTKKKDI 453
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL-SLNYLQLSTSEVKPYKD----- 135
+I++ +RPVPL Y + ++D+ K + L N + +P +
Sbjct: 454 YVISTPKRPVPLEHYLWAGKKMHKIVDQNKKFLETGLRDANEAMSGKKDERPNQSVPTRG 513
Query: 136 ---------GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-- 184
GG R S+ N++ S N R+ Q LW
Sbjct: 514 NISQRGGQRGGPNHRGSQSARGGRGGNVMRG-ASGAASFNRGGRGGRTTANQ-DKNLWVH 571
Query: 185 ---HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE-------VELALKRFRI 234
HL+ D+LP F+F+++ C+ L + LD C +E VE ++ R RI
Sbjct: 572 LVQHLKKEDLLPGCIFVFSKKRCEENADALSN---LDYCTANEKSAIHMIVEKSIARLRI 628
Query: 235 LYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ ++ LL +G+A HH G LPI K +E LF + LVKV+FATET A G+N+P
Sbjct: 629 EDRQLPQIRRLRDLLSRGIAVHHGGLLPIVKEMVEILFAKSLVKVLFATETFAMGLNLPT 688
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG--AEECCKL 351
RT V S + K L S E QMAGRAGRRG+D+ G V++V E A +
Sbjct: 689 RTVVFSGIRKHDGRSFRDLLSGEYIQMAGRAGRRGLDSSGTVIIVGNGDEAPPAGTLKTM 748
Query: 352 LFAGVEPLVSQFTASYGMVLNLL 374
+ L SQF +Y M+LNLL
Sbjct: 749 ILGQPTKLQSQFRLTYNMILNLL 771
>gi|392578706|gb|EIW71834.1| hypothetical protein TREMEDRAFT_27449 [Tremella mesenterica DSM
1558]
Length = 1283
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 198/401 (49%), Gaps = 52/401 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 399 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 458
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--------PY 133
+I++ RPVPL Y L +++ K ++ + L + K P
Sbjct: 459 YVISTPMRPVPLEHYLYAGKELHKIVNSKSLFLSSGYTSASESLKRKQDKERELAGLPPL 518
Query: 134 KDGGSRRRNSRKHADMNS-------------NNIVTSFGQHQLSKNSIN-AIRRSQVP-- 177
R +++ K D+ + ++ G + S +++N ++ S P
Sbjct: 519 SKTNGRGQSTTKPKDLPTGKSAPFTKIGAGRTHLNRGGGPNGSSIHTVNPTVKHSNAPLG 578
Query: 178 ----------QVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 222
Q+ +W HL+ ++LP + F+F+++ C+ L +L ++ E
Sbjct: 579 KGGGFGRSKGQLDQNVWTHLVNHLKKGNLLPVVNFVFSKKKCEEYAGSLSALDLCNQKEK 638
Query: 223 SEVEL----ALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRG 274
SEV L AL R + + P +R ++ L+ +G+ HH G LP+ K +E LF RG
Sbjct: 639 SEVHLTWEKALNRLKGTDKVLPQILR---MRDLMSRGIGVHHGGLLPLVKEIVEILFSRG 695
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
LVKV+FATET A G+NMPA++ V S + K L E QMAGRAGRRG+D G
Sbjct: 696 LVKVLFATETFAMGVNMPAKSVVFSGIRKHDGQSFRNLLPGEYTQMAGRAGRRGLDTTGT 755
Query: 335 V-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
V +LV E +++ L SQF +Y M+LNLL
Sbjct: 756 VIILVGDELPTQHELQEMMLGVPNRLTSQFRLTYNMILNLL 796
>gi|344239160|gb|EGV95263.1| Helicase SKI2W [Cricetulus griseus]
Length = 1316
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 194/391 (49%), Gaps = 50/391 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 342 DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 401
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKH---------------------M 114
+I++ RPVPL Y T+ L LLD +G
Sbjct: 402 YVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYCAGPHAPSLCAQVLCWA 461
Query: 115 NRKLSL---NYLQLST--SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169
+R L+L L L+ S ++ Y +++ KHA +FG Q +
Sbjct: 462 SRPLTLCSGTVLGLTPPHSVLRYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGP 513
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
A R + L LR+R LP + F F+R CD L +L E SEV L L
Sbjct: 514 AQDRGVY---LSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEVHLFL 570
Query: 230 KRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+R + R+ P + + L +G+ HH+G LPI K +E LF RGLVKV+FATET
Sbjct: 571 QRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATET 630
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYE 343
A G+NMPART V S+ K S L E QMAGRAGRRG+D G V+L+ +
Sbjct: 631 FAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP 690
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ +++ L SQF +Y M+LNLL
Sbjct: 691 EMADLHRMMMGKPSQLQSQFRLTYTMILNLL 721
>gi|402590817|gb|EJW84747.1| hypothetical protein WUBG_04342, partial [Wuchereria bancrofti]
Length = 743
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 170/329 (51%), Gaps = 32/329 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DEVHY++D RG VWEE++I P +I+ LSATV N E A W+G+I K +IT
Sbjct: 422 VIFDEVHYINDAERGHVWEEVLIMLPAHAKIVMLSATVPNCVEFADWVGRIKKKRIYVIT 481
Query: 86 SSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++RRPVPL + TK + ++D G+ + + SL +T G
Sbjct: 482 TARRPVPLEHFLYTGQDGKTKKDMFKIIDSSGQFVQKGYSLASAAKATIRKAIANVGPVG 541
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R NN + S+ ++ ++ I + HLR ++MLP I F+F
Sbjct: 542 YR---------PNNKILSYLKNSYDDKNV----------YITVIDHLRMQNMLPVIVFVF 582
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVE----LALKRFRILYPDAVREPAIKGLLK-GVAA 254
+RR CD L +L E E S + + R R + + +K L K G A
Sbjct: 583 SRRRCDDNAYLLRSVDLTTEKEKSSIHHFFLRCIARLRGSDKNLPQVLQMKELCKHGFAI 642
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K +E LFQ+GLVKV+FATET A G+NMPART + SL K L
Sbjct: 643 HHSGILPILKEVVELLFQKGLVKVLFATETFAMGVNMPARTVIFDSLQKHDGRQLRLLNP 702
Query: 315 NELFQMAGRAGRRGIDNRGHV-VLVQTPY 342
E QMAGRAGRRG+D G V VL + PY
Sbjct: 703 GEYIQMAGRAGRRGLDATGSVIVLCKGPY 731
>gi|150866632|ref|XP_001386296.2| hypothetical protein PICST_85287 [Scheffersomyces stipitis CBS
6054]
gi|149387888|gb|ABN68267.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 1239
Score = 199 bits (505), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 192/382 (50%), Gaps = 42/382 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P ++ I LSATV N E A W+G+ K
Sbjct: 394 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHIKYILLSATVPNTFEFANWVGRTKEKDI 453
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ +RPVPL + S K + ++D + + L S+ KP S
Sbjct: 454 YVISTPKRPVPLEIFISAKDNMFKVVDSHRVFSEDEFKKHKEHLENSKKKPGLPKASMGS 513
Query: 139 --------------RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 184
R + A+ N+VT G +++ N ++ +
Sbjct: 514 GTRGGPGGSARGGNRGGRGGQSANRGRGNLVTRAGGRFFAQDGPNK------GTWLNLVQ 567
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR--FRILYPDAVRE 242
+L+ ++LP + F+F+++ C+ L +L E SE+ + + + FR+ D RE
Sbjct: 568 YLKKSNLLPCVAFVFSKKKCEEYADSLTSVDLCTAREKSEIHMFIDKSLFRLKKED--RE 625
Query: 243 -PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
P I + L +G+A HH G LPI K IE LF + LVKV+FATET A G+N+P RT V
Sbjct: 626 LPQILKIREMLSRGIAVHHGGLLPIVKECIEILFAKTLVKVLFATETFAMGLNLPTRTVV 685
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLL 352
SSL K L E QM+GRAGRRGID G V+++ +P + E +
Sbjct: 686 FSSLRKNDGRSFRNLLPGEFTQMSGRAGRRGIDATGTVIVMAYNDPLSPVDFKE----IT 741
Query: 353 FAGVEPLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 742 LGTPTKLQSQFRLTYNMILNLL 763
>gi|241959260|ref|XP_002422349.1| RNA helicase, putative; antiviral helicase ski2 homologue,
putative; superkiller protein 2 homologue, putative
[Candida dubliniensis CD36]
gi|223645694|emb|CAX40355.1| RNA helicase, putative [Candida dubliniensis CD36]
Length = 1233
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 194/394 (49%), Gaps = 70/394 (17%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 391 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 450
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGSR 139
+I++ +RPVPL + S K L ++D NRK S N E + +KD G
Sbjct: 451 YVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRKFSEN-------EFRKHKDFLEGGG 498
Query: 140 RRNSRKHADM-----------------------------NSNNIVTSFGQHQLSKNSINA 170
++N M NS+ FG+ KN+
Sbjct: 499 KKNELPSTTMGSGSRGGPGGTARGGNRGGRGSRGGQGRGNSSG-PKRFGRDGPKKNTW-- 555
Query: 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 230
ID + +++S ++LPA+ F+F+++ C+ L + + E SE+ + +
Sbjct: 556 ---------IDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFID 606
Query: 231 RFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
R RE P I + L +G+A HH G LPI K IE LF + LVKV+FATET
Sbjct: 607 RAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETF 666
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-----T 340
A G+N+P RT V SS+ K L E QM+GRAGRRG+D G V+++ +
Sbjct: 667 AMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAYNDPLS 726
Query: 341 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
P + E ++ L SQF +Y M+LNLL
Sbjct: 727 PTDFKE----VVLGTPTKLSSQFRLTYSMILNLL 756
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG---------IKVRLWKN 808
G A + EL + ++ N L D +PA++ A+ + V EG I RL K
Sbjct: 1061 GRVACEVNSGWELIITELVLNNFLADFEPAEIVALLSCFVYEGRTQEEEPPLITPRLEKG 1120
Query: 809 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ---FSGMVEAWASGLTW 865
+ I E + ++ V ++E Q E ++S+ + +V WA+GL++
Sbjct: 1121 KAKILEIAEKLLKV----------YVEKQVSLTSEEEDFVESKRFALANVVYEWANGLSF 1170
Query: 866 REMMMDCALDDGDLARLLRR 885
E+M +G + R++ R
Sbjct: 1171 NEIMQISVEAEGTIVRVITR 1190
>gi|402589575|gb|EJW83507.1| ATP-dependent RNA helicase DOB1 [Wuchereria bancrofti]
Length = 924
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 183/357 (51%), Gaps = 38/357 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H + +I
Sbjct: 130 VIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPVHVIY 189
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + + L +++ +G K +
Sbjct: 190 TDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT------------------------ 225
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
MN + V GQ +++ S P V++ + L+ RDM+P I F F+R+
Sbjct: 226 ---EAMNVLSQVGDAGQGGINRGKKGGT--SGTPHVVNIIRTLKERDMIPVIIFSFSRKE 280
Query: 204 CDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAG 258
C+A + + + E E ++V E+ + +L + + P I LL+G+ HH+G
Sbjct: 281 CEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGVHHSG 340
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS E
Sbjct: 341 LLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEYI 400
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG V+L+ G + +++ G +PL SQF +Y MVLNLL
Sbjct: 401 QMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGGAPDPLNSQFRLTYNMVLNLL 457
>gi|84496432|ref|ZP_00995286.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84383200|gb|EAP99081.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 956
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 209/456 (45%), Gaps = 72/456 (15%)
Query: 5 IVVFSCSV--GMV-SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V MV + S L + +V+DEVHYL+D RG VWEE+II+ P+ VQ+I LS
Sbjct: 109 VVVMTTEVLRNMVYAGSSTLQGLGFVVMDEVHYLADRFRGAVWEEVIIHLPESVQVISLS 168
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE-----KGKHMNR 116
ATV+NA+E W+ ++ G ++ S RPVPL + ++ L E +
Sbjct: 169 ATVSNAEEFGDWLAEVRGNHAVVVSEHRPVPLWQHMLVGNSMFDLFVEGTSEPDADGASA 228
Query: 117 KLSLNYLQLSTSEVKPYKDG---GSRRRN----------------------SRKHA---D 148
++S + +Q + DG GS R SR H
Sbjct: 229 RVSPDLIQAIRGAEQQRADGWVRGSTRDKGRGPERPRDQGRDGGRGGGRGVSRDHGRGPG 288
Query: 149 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 208
+ V+ + + R + + L +LPAI FIF+R GC+ AV
Sbjct: 289 RGGSVAVSGASAGRADRGFTRGARPGGGATRAEVIAQLDRDGLLPAITFIFSRMGCEGAV 348
Query: 209 QYL--EDCNLLDECEMSEVE---------LALKRFRIL-YPDAVREPAIKGLLKGVAAHH 256
L D L+ + E ++ LA + IL Y D V +GL +G A HH
Sbjct: 349 GQLLSSDTRLIPQREGEQIRRHVEERMGSLAEEDLGILGYYDFV-----EGLSRGFACHH 403
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LP+++ +EELF G ++ VFATETLA GINMPART VL L K +T E
Sbjct: 404 AGMLPLFREIVEELFTGGRIRAVFATETLALGINMPARTVVLEKLVKFNGETHADITPAE 463
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
Q+ GRAGRRGID GH V+ + L PL S F +Y M +NL+A
Sbjct: 464 YTQLTGRAGRRGIDIEGHAVVQWSRGLDPLAVGGLASTRTYPLRSSFKPTYNMAVNLVA- 522
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
Q GR + AR ++E SF +
Sbjct: 523 ----------------QVGRQV--ARDILETSFAQF 540
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 7/206 (3%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RLK + L +++E S + F RI V+ + L+ + V+ GE +
Sbjct: 744 ERWHRLKRETSGLKRKVEGRTNSVARTFDRICVVLTQLGYLEDD--VVTERGERLRRLYT 801
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
E +L A LR+ + + L LAA ++LV E R + + S P+ V I +
Sbjct: 802 ERDLLAAECLRHDVWMRLDAPGLAACVSTLVHE---PRHEQADPSPRMPNEDVAAAITEM 858
Query: 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886
S +L+ HG+E+ D + MV WASG ++ + GD R ++
Sbjct: 859 QRRWSELDDLEGDHGLEVTAVPDGGMAWMVHRWASGERLDAVLRGQEMAAGDFVRRCKQI 918
Query: 887 IDLLAQIP-KLPDVD-QRLQKNAVDA 910
+DLL QI PD + +R + A+D
Sbjct: 919 VDLLGQIADAAPDTELRRTARKAIDG 944
>gi|413935661|gb|AFW70212.1| hypothetical protein ZEAMMB73_307219 [Zea mays]
Length = 1373
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 209/415 (50%), Gaps = 39/415 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV N E A WIG+ K
Sbjct: 490 DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTKQKKI 549
Query: 83 LITSS-RRPVPL---------TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+TS+ +RPVPL + + L ++ K +K +LN VKP
Sbjct: 550 RVTSTNKRPVPLEHCLFYSGEVYKICERDMFLAQGFKEAKDAFKKKNLNKFG-----VKP 604
Query: 133 YKDGGS---RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV-PQVIDTLW---- 184
G+ R K+ D ++ + +H+ S + + +++S P+ ++L+
Sbjct: 605 GSKSGTPAVRAGTQGKNPDTSNKGRDQKYPKHRNSNSGVATVQQSSSGPKRFESLFWMPL 664
Query: 185 --HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVR 241
+L + ++P + F F++ CD + + +L E SE+ + K F L
Sbjct: 665 VNNLLKKSLVPVVIFCFSKNRCDKSADSMFGTDLTSSSEKSEIRVFCDKAFSRLKGSDRN 724
Query: 242 EPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297
P + G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 725 LPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV 784
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
SL K +L E QMAGRAGRRG+DN G V+++ E K L G +
Sbjct: 785 FDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIIMCRDEIPEESDLKNLIVG-K 843
Query: 358 P--LVSQFTASYGMVLNLLAGAKVMHLSNES---DDMKALQAGRSLEEARKLVEQ 407
P L SQF +Y M+L+LL +V L E A ++L E KL+ Q
Sbjct: 844 PTRLESQFRLTYTMILHLL---RVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQ 895
>gi|402866529|ref|XP_003897432.1| PREDICTED: helicase SKI2W isoform 1 [Papio anubis]
Length = 1246
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 181/365 (49%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYTWSAQRGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>gi|379709524|ref|YP_005264729.1| putative ATP-DEPENDENT DNA HELICASE HELY [Nocardia cyriacigeorgica
GUH-2]
gi|374847023|emb|CCF64093.1| putative ATP-DEPENDENT DNA HELICASE HELY [Nocardia cyriacigeorgica
GUH-2]
Length = 899
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 196/411 (47%), Gaps = 59/411 (14%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ +S L + +V+DEVHYL+D RG VWEE I++ EV+++ LSATV+NA+E W
Sbjct: 120 LYASSDALHALSYVVMDEVHYLADRFRGAVWEEAILHLSPEVRLVSLSATVSNAEEFGAW 179
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+ + G T ++ RPVPL + + L D ++SE K
Sbjct: 180 METVRGDTAVVVDETRPVPLWQHVMVGRRMFDLFDS----------------NSSEQKVL 223
Query: 134 KDGG-SRRRNSRKHAD-MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
D R R+ AD MN S+G + R P+V L L +
Sbjct: 224 VDEDLVRYIRHRESADRMN------SWGGPRGRGGGRRDFRPLPRPEV---LAKLDEEGL 274
Query: 192 LPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVELALKRFRILYPDAVREPA-- 244
LPAI FIF+R GCD A L C +L + +V+ +++ P A E
Sbjct: 275 LPAITFIFSRAGCDGA---LAQCLRSGLDLGRGQDQEQVDAIIEKHTGELPKADLEVLGY 331
Query: 245 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+ L +G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART VL L
Sbjct: 332 WEWREALHRGLAAHHAGMLPAFRHTVEELFVNGLVRAVFATETLALGINMPARTVVLERL 391
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
K +LT E Q+ GRAGRRGID GH V++ P L PL S
Sbjct: 392 VKYNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRS 451
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412
F Y M +NL+ D M A EAR L+E+SF +
Sbjct: 452 SFRPGYNMSINLI------------DRMGA-------AEARALLERSFAQF 483
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 12/198 (6%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL + + +++ S + F RI ++ E R ++ + G A I
Sbjct: 683 ERYARLSRETDTMRQKVAATTNSLARTFDRILGLLEE-RGF-VHEGEVTQDGRRLARIYA 740
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN-VINV 825
E++L +A LR + L PA+LAAV + LV E + + S EP + + V
Sbjct: 741 ESDLLVAECLRQGLWRGLGPAELAAVVSILVYESRQEGGYLGASGPTEPVRRAVGATVAV 800
Query: 826 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLA 880
+ R+ + +H + D + WA G E ++ L GD
Sbjct: 801 WSQLRTD----EARHKLAPTREPDLGIVTGIHTWARGDGLAESLLASGDQGAPLSAGDFV 856
Query: 881 RLLRRTIDLLAQIPKLPD 898
R R+ IDLL QI D
Sbjct: 857 RWCRQVIDLLDQIHSTAD 874
>gi|402866531|ref|XP_003897433.1| PREDICTED: helicase SKI2W isoform 2 [Papio anubis]
Length = 1146
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 181/365 (49%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 316 DLEWVIFDEVHYTWSAQRGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 375
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 376 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 421
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 422 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 470
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 471 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 530
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 531 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 590
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 591 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 650
Query: 370 VLNLL 374
+LNLL
Sbjct: 651 ILNLL 655
>gi|340713859|ref|XP_003395452.1| PREDICTED: helicase SKI2W-like [Bombus terrestris]
Length = 1232
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 219/451 (48%), Gaps = 83/451 (18%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HG 79
L D++ ++ DEVHY+++ RG VWEE +I P+ V ++ LSATV N A W+G+
Sbjct: 395 LRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTLVMLSATVPNPLIFADWVGRTKKK 454
Query: 80 KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
KT +I++ +RPVPL Y TK +LDE G +
Sbjct: 455 KTYVISTLKRPVPLQHYLYTGTDGKTKDNKFLVLDESGHFL------------------- 495
Query: 134 KDG---GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----H 185
DG + +N + ++ N+ ++ Q Q++ P+ LW H
Sbjct: 496 LDGWYKATTTQNPKNQSNKNAKDVKRKPMQRQMT------------PKQEQVLWNAFISH 543
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245
LR+++MLP + F+ +R+ CD + L + +L E E + R + + +R +
Sbjct: 544 LRTQNMLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTI-------RTFFQNNIRH--L 594
Query: 246 KG--------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
KG L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NM
Sbjct: 595 KGTDRQLPQVLMMRELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNM 654
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCK 350
PART V S+ K + L +E QMAGRAGRRG D G V V+ QT E
Sbjct: 655 PARTVVFDSIKKYDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCQTLVPHFNELQN 714
Query: 351 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410
++ + L S+F +Y MVLNL NES ++A+ RS +E+ ++ Q+
Sbjct: 715 MMCGQAQNLESKFKVTYSMVLNL-------RRLNESVTVEAMMR-RSFKESPVVINQN-- 764
Query: 411 NYVGSNVMLAAKDELCKIQKETDVLTSEISD 441
NY + ++EL K+ TD L +SD
Sbjct: 765 NYKIQ--LQRLENELSKLPPLTD-LQKNLSD 792
>gi|405972024|gb|EKC36821.1| Helicase SKI2W [Crassostrea gigas]
Length = 1367
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 181/359 (50%), Gaps = 28/359 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ +V DEVHY++D RG VWEE++I P+ V II LSATV N E A WIG+ K
Sbjct: 385 DLEWVVFDEVHYINDAERGVVWEEVLIMLPQHVHIILLSATVPNTLEFADWIGRTKKKKI 444
Query: 83 LITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ S+ +RPVPL + T T GK + N L L K + G +
Sbjct: 445 FVISTLKRPVPLEHHLYTGTT--------GK------TSNELFLIVDGKKNFLTSGYNKA 490
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
K S+ FG N + + VID L + +D LPA+ F F++
Sbjct: 491 LEAKKEKSKSSQ---GFGPKGTRGGHPNKDKNIWI-SVIDML---KKKDKLPAVAFTFSK 543
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI---KGLLK-GVAAHH 256
+ D Q L +L E SE+ + + L P + P + + LLK G+ HH
Sbjct: 544 KKIDENAQNLLSKDLTTASEKSEIHIFFHSAIKKLKPPDQKLPQVLQMESLLKNGIGVHH 603
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K +E LFQR LVK++F+TET A G+NMPART V S+ K + L E
Sbjct: 604 SGILPILKEVVEMLFQRALVKILFSTETFAMGVNMPARTVVFDSIRKNDGTCFRDLLPGE 663
Query: 317 LFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D G V +L + + K++ L SQF +Y M+LNLL
Sbjct: 664 YIQMAGRAGRRGLDTTGTVIILCKGDVPEMSDLHKMMLGKPTKLESQFRLTYSMILNLL 722
>gi|353236742|emb|CCA68730.1| probable SKI2-antiviral protein and putative helicase
[Piriformospora indica DSM 11827]
Length = 1236
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 182/373 (48%), Gaps = 23/373 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 367 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 426
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG---S 138
+I++ +RPVPL + ++D KG ++ L + K + G
Sbjct: 427 YVISTPKRPVPLEHFLYAGKETFKIVDAKGSFLSSGYKEAGEALRRKQDKEREAAGLPPV 486
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSI---------NAIRRSQVPQVIDTLWHLRSR 189
+R +R A + + + L HLR +
Sbjct: 487 QRLGARAAAPQRGQRGGGPGRGAATRGGGVVKTGPMGGARTFHSADKNLYVHLLNHLRKK 546
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAI 245
++LP + F F+++ C+ L + +L E SEV E AL R + + +
Sbjct: 547 ELLPVVVFTFSKKRCEENAATLTNADLCTSVEKSEVHVAVEKALSRLKGTDKQLPQIGRM 606
Query: 246 KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+ LL +G+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR V S + K
Sbjct: 607 RDLLSRGIGVHHGGLLPIVKEVVEILFARGLVKILFATETFAMGVNMPARCVVFSGIRKH 666
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVS 361
+L + E QM+GRAGRRG+D+ G VV+V + P K++ L S
Sbjct: 667 DGKSFRELLAGEYTQMSGRAGRRGLDSTGVVVIVAGDELPEMAT--LNKMMLGTPSRLQS 724
Query: 362 QFTASYGMVLNLL 374
QF +Y M+LNLL
Sbjct: 725 QFRLTYNMILNLL 737
>gi|393911807|gb|EFO22056.2| hypothetical protein LOAG_06429 [Loa loa]
Length = 1008
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 180/357 (50%), Gaps = 39/357 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H + +I
Sbjct: 265 VIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPVHVIY 324
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + + L +++ +G K +
Sbjct: 325 TDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT------------------------ 360
Query: 144 RKHADMNSNNIVTSFGQ-HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+ N+++ G N S P V++ + L+ RDM+P I F F+R+
Sbjct: 361 ------EAMNVLSQVGDAGHGGINKGKKGGTSGTPHVVNIIRTLKERDMIPVIIFSFSRK 414
Query: 203 GCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHA 257
C+A + + + E E ++V E+ + +L + + P I LL+G+ HH+
Sbjct: 415 ECEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGVHHS 474
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS E
Sbjct: 475 GLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEY 534
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNLL
Sbjct: 535 IQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNLL 591
>gi|157137573|ref|XP_001664014.1| helicase [Aedes aegypti]
gi|108869679|gb|EAT33904.1| AAEL013825-PA [Aedes aegypti]
Length = 947
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 185/376 (49%), Gaps = 65/376 (17%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHYL+D RG VWEE++I P V I+ LSATV N E A W+G+ K
Sbjct: 114 DLEYVIFDEVHYLTDADRGHVWEEVLILLPDHVCIVMLSATVPNTLEFANWVGKTKKKRV 173
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
++++ +RPVPL Y TK L ++DEK N+L D
Sbjct: 174 YVVSTPKRPVPLEHYLYTGCGGKTKDDLFLVVDEKS---------NFLM----------D 214
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI-NAIRRSQVPQVID-TLW-----HLRS 188
G + + ++ L+KN+ NA+R+ Q Q + TLW HL
Sbjct: 215 GYRKAKEAK------------------LAKNTTKNAVRQGQFNQKQEQTLWVGLIHHLEK 256
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM----SEVELALKRFRILYPDAVREPA 244
+P + F +R CD L C+L E S +L L++ + PD +
Sbjct: 257 NKKMPVVAFTLSRNRCDNNANALMSCDLTTPSEKYFINSFFQLCLQKLKP--PDRILPQV 314
Query: 245 IK---GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
I+ L +G+ HH+G LPI K +E LF RGLVK++FATET A G+NMPA+T + S
Sbjct: 315 IQVQNCLQRGIGIHHSGILPILKEIVEMLFARGLVKILFATETFAMGVNMPAKTVIFDST 374
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL---VQTPYEGAEECCKLLFAGVEP 358
K L E QMAGRAGRRG+D G V++ V P E + ++
Sbjct: 375 KKFDGQTSRLLQPAEYTQMAGRAGRRGLDKNGTVIIICKVDVPSES--DLRNMILGKPMR 432
Query: 359 LVSQFTASYGMVLNLL 374
L SQF +Y M+L LL
Sbjct: 433 LESQFRLTYAMILYLL 448
Score = 39.3 bits (90), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 18/195 (9%)
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA-MVLRNKILLDLKPA 787
S + ++ V+ E + +D QV G A + G+NEL + +VLRN IL DL+PA
Sbjct: 742 SLYPDYCNKLKVLQELKYIDDMQQVAMK-GRVACEM-GQNELMITELVLRN-ILTDLQPA 798
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK-HGVEIPC 846
++AA+ +SLV ++ + + T + VL E + + EK + V
Sbjct: 799 EIAALLSSLV--------FQAKTEVEPKMTETLKKAKVLFEEVENDIRYVEKMYNVTDIL 850
Query: 847 CLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQ 901
D G++E WA + E+M + +G + R +++ + L + + D
Sbjct: 851 EKDELNFGLIEVVYEWARNKPFAEIMELTDIKEGIIVRCIQQLNETLCNVKDAARIIGDP 910
Query: 902 RLQKNAVDASNVMDR 916
L +ASN + R
Sbjct: 911 VLHSKMEEASNAIKR 925
>gi|423348986|ref|ZP_17326642.1| hypothetical protein HMPREF9156_00180 [Scardovia wiggsiae F0424]
gi|393703215|gb|EJD65416.1| hypothetical protein HMPREF9156_00180 [Scardovia wiggsiae F0424]
Length = 890
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 201/402 (50%), Gaps = 46/402 (11%)
Query: 2 QLRIVVFSCSV--GMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 58
Q I+V + V M+ +S L + ++LDE+HYL+D RG VWEE+II+ P+ V+I+
Sbjct: 158 QADIIVMTTEVLRNMLYEDSATLTALRYVILDEIHYLADRMRGQVWEEVIIHLPRTVKIV 217
Query: 59 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 118
LSATV+N ++ A WI + G+T L+ S +RPVPL LL K R +
Sbjct: 218 GLSATVSNVEDFARWIESVRGETSLVVSEKRPVPLIQEV--------LLQHDQKKEPRLV 269
Query: 119 SLNYLQLSTSEVKPYKDG-----------GSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 167
SL YL TS V P S + + TS Q L K+S
Sbjct: 270 SL-YLNGDTSAVNPELTALIKQWDHEAVRSSAGAGGKPYRRGRGGGAGTSSRQGSL-KDS 327
Query: 168 INAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDE 219
N P+ V+D L L DMLP I+FIF+R GCD AV E C L +
Sbjct: 328 RNRPAARYAPKRWAVVDELDFL---DMLPGIYFIFSRNGCDKAV---EQCMRAGLQLTGD 381
Query: 220 CEMSEVEL---ALKRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQ 272
E + ++ RI DA R L +G+A HHAG + +++ +E+LF+
Sbjct: 382 SEARRIRRIVDSMAEGRISRDDA-RALGFANFRNALEQGIAPHHAGMVALYREIVEKLFE 440
Query: 273 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332
+GL+K+VFATETLA GINMPAR V+ L K L+ E Q+ GRAGRRGID+
Sbjct: 441 QGLLKIVFATETLALGINMPARCVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDSV 500
Query: 333 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
G+ ++V L V PL S F ++ M +NLL
Sbjct: 501 GYAIVVDHRDFEPSTAAALSSKRVYPLHSSFRPTFNMAVNLL 542
>gi|452821286|gb|EME28318.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1062
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 168/534 (31%), Positives = 245/534 (45%), Gaps = 81/534 (15%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DEVHY+ D RG VWEE II P+ V+ + LSAT+ NA E A WI Q+ + I
Sbjct: 250 VIFDEVHYMRDKERGVVWEETIIMVPENVRFVFLSATIPNAREFAEWIVQLKNQPCHTIY 309
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + L ++DEKG+ + T E K G + +++
Sbjct: 310 TDSRPVPLQHYLFPAGGDGLYLVVDEKGQFRD----------DTFEKALSKIGENSIKDT 359
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K A+MN N + G S V ++I + R+ P I F F+RR
Sbjct: 360 SKGAEMNKKNKKAAKGA-------------SDVYRIIKLIME---REYDPVIVFAFSRRE 403
Query: 204 CDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A L L + + S VE + + L D + P I L +G+ HH+G
Sbjct: 404 CEALALQLSKLELNTDEQKSLVEQVFVNAMDSLSEDDKKLPQITAALPLLKRGIGIHHSG 463
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K E LFQ GL+KV+FATET A G+NMPA+T V +++ K ++ E
Sbjct: 464 LLPILKEVTEILFQEGLIKVLFATETFAMGLNMPAKTVVFTAVRKFDGEAFRFISGGEYI 523
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QM+GRAGRRG+D RG +L E +L +PL S F Y M+LNLL +
Sbjct: 524 QMSGRAGRRGLDERGISILTVDERIQPETARAILKGNADPLRSSFHLEYNMLLNLLRSEE 583
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
S + QA R+L + N N +L KDEL KI E DV
Sbjct: 584 ANPEYVISRSLAQFQADRALPD----------NEAKLNELLRQKDEL-KISMEDDV---- 628
Query: 439 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 498
KE A +++L +R R+++R + F A K++L +
Sbjct: 629 -------------------KEFAAYKDQL---ERLRSKVRNIV----FQA-KNVLPFLQV 661
Query: 499 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 552
G L C+Q K+ V + F +++S++K + D F ++ L S
Sbjct: 662 GRLARFCVQDKEVRDFGWGV----VVNFTKMNTSQVKEQG-LRDKFLIDALVFS 710
>gi|323507909|emb|CBQ67780.1| probable SKI2-antiviral protein and putative helicase [Sporisorium
reilianum SRZ2]
Length = 1288
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 194/393 (49%), Gaps = 54/393 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II CP+ + +I LSATV N E A W+G+ K
Sbjct: 433 DVEFVIFDEVHYVNDQERGVVWEEVIILCPQHINLILLSATVPNTKEFADWVGRTKKKDI 492
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + + ++D + + + + +K + R++
Sbjct: 493 YVISTPKRPVPLEHFLYAGKEMFKIVDARAQFLG------------TGIKAAGEALKRKQ 540
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP------------------------ 177
+ A+ + G+ + S + R P
Sbjct: 541 EKEREANAAAGGGAARGGRGGGAAGSNSRGRGGMTPARGAAPRGRGGAVGGRGGGYTGTT 600
Query: 178 ----QVIDTLW-HL----RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA 228
+ LW HL R ++LP + F+F+++ C+ + + +L + SEV +
Sbjct: 601 TVRTGLDKNLWIHLVGNLRKNNLLPCVVFVFSKKRCEEYATSMPNTDLNTAKDKSEVHIL 660
Query: 229 LKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+++ + +E P IK L +G+ HH G LPI K +E LFQRGLVKV+FATE
Sbjct: 661 IEKSLTRLKGSDKELPQIKRMRDLLGRGIGVHHGGLLPIVKEIVELLFQRGLVKVLFATE 720
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
T A G+NMPAR+ V SS+ K G +L E QM+GRAGRRG+D G VV++ +
Sbjct: 721 TFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLDATG-VVIINAADQ 779
Query: 344 GAEECC--KLLFAGVEPLVSQFTASYGMVLNLL 374
E K+L L SQF +Y M+LNLL
Sbjct: 780 LPETAVLHKMLLGQPTKLQSQFRLTYNMILNLL 812
>gi|312079065|ref|XP_003142013.1| hypothetical protein LOAG_06429 [Loa loa]
Length = 1043
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 180/357 (50%), Gaps = 39/357 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H + +I
Sbjct: 265 VIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPVHVIY 324
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + + L +++ +G K +
Sbjct: 325 TDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT------------------------ 360
Query: 144 RKHADMNSNNIVTSFGQ-HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+ N+++ G N S P V++ + L+ RDM+P I F F+R+
Sbjct: 361 ------EAMNVLSQVGDAGHGGINKGKKGGTSGTPHVVNIIRTLKERDMIPVIIFSFSRK 414
Query: 203 GCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHA 257
C+A + + + E E ++V E+ + +L + + P I LL+G+ HH+
Sbjct: 415 ECEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGVHHS 474
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS E
Sbjct: 475 GLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEY 534
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNLL
Sbjct: 535 IQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNLL 591
>gi|298245680|ref|ZP_06969486.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297553161|gb|EFH87026.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
Length = 882
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 200/419 (47%), Gaps = 55/419 (13%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 78
S L DV +V DE+HYLSD RG VWEE II PK VQ++ LSATV+NA++LA WI ++H
Sbjct: 132 SELRDVGFVVFDELHYLSDFDRGPVWEEAIICSPKHVQLVGLSATVSNAEDLASWISRVH 191
Query: 79 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNRKLSLNY 122
L+ +R VPL Y+ + + D +G + MNR+ Y
Sbjct: 192 RPISLVFHEQRAVPLEHYYYYGDKIHLVQDAEGNRVNRFPRVGGEAKIAQMMNRRRIYVY 251
Query: 123 LQLSTSEV------KPYKDGGSRRRNSR-------KHADMNSNNIVTSFGQHQLSKNSIN 169
EV + + D RR R + A+ + QH + ++ +
Sbjct: 252 DNDEEGEVDEEAVTEEFWDKQENRRKGRVPNREQRRRAERRGKSSTARAQQHSSAPSTAS 311
Query: 170 A----------------IRRSQ-----VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 208
A +R Q P+ +TL LR+ DMLP ++F+ RR + A
Sbjct: 312 AHAAPNTEEGSEAEERPVRPRQRQFFKAPEPGETLTALRNADMLPCLYFLPGRRVVEEAA 371
Query: 209 QY--LEDCNLLDECEMSEVELALKRFRILYPDAVREPAI---KGLLKGVAAHHAGCLPIW 263
L +E E+ + R+ D + + L +G+A HHAG LP
Sbjct: 372 TSASLHSFTTPEEEAFIREEIGIWLDRLPPEDRNLQQVLSLTNMLPRGIAFHHAGLLPGL 431
Query: 264 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 323
K +E LF +G ++ VFAT+TLA G+NMPART V+ SLSK LT NE Q+ GR
Sbjct: 432 KVLVETLFAQGHLRAVFATDTLALGVNMPARTVVVGSLSKFDGQEMRLLTPNEYRQLTGR 491
Query: 324 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 382
AGRRG+D RG V+ +P+E E+ + + + P+ S F Y VLNL V HL
Sbjct: 492 AGRRGMDVRGSAVIPYSPWEPFEDAFQRITGEMLPVTSSFVIRYNSVLNLWRPGDVQHL 550
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 770 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
+ + M++R + + P ++A +C+ K RL N + ++ VL
Sbjct: 656 MLVEMIMRG-VFDGMSPNEVAEICSWFTFSNDK-RLHNRNVLASRLARVRRDLYQVLQHV 713
Query: 830 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 889
++E+ G+ + +F G+ AW+ G++ ++ L +GD+ LL +TIDL
Sbjct: 714 HG----IEERAGINFSPSIQPEFHGVAFAWSRGMSLNALLNRIELAEGDILMLLNQTIDL 769
Query: 890 LAQI 893
L Q+
Sbjct: 770 LQQV 773
>gi|302344032|ref|YP_003808561.1| DEAD/DEAH box helicase [Desulfarculus baarsii DSM 2075]
gi|301640645|gb|ADK85967.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
2075]
Length = 911
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 233/478 (48%), Gaps = 57/478 (11%)
Query: 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-K 80
D ++VLDE HYL D RG VWEE+IIY P V+++ LSATV NA++LA W+ + G +
Sbjct: 162 IDSSLVVLDEAHYLGDPDRGVVWEEVIIYLPPRVRLLLLSATVENAEQLARWLMFVRGNQ 221
Query: 81 TELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+ S +RPVPL F L PL +G + K+S ++L+ + K G R
Sbjct: 222 CRTVRSDQRPVPLFPVFMFPDGELAPLKTRRG--LLGKIS-HFLEQEARQPK-----GGR 273
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ NS PQ + L L MLPAI+F+
Sbjct: 274 QINS--------------------------------TPQFANILSALDHAAMLPAIFFLK 301
Query: 200 NRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHA 257
+R CD A+ + L +D+ + + + F YP P ++ L + VAAHHA
Sbjct: 302 SRADCDNALAHAAGARLAVDQAQGQRLNRFVDDFLAEYPFLADHPQLEPLRRLRVAAHHA 361
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LP WK +E L Q GL++ +F+T T+AAG+N PART V++ + + L + +L
Sbjct: 362 GHLPHWKLLVERLMQTGLLRAIFSTSTVAAGVNFPARTVVVTQSDRFNGREFVDLRATDL 421
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QM GRAGRRG+DN G ++V PY+ LL A EP+ SQ ++ M LNLL
Sbjct: 422 LQMTGRAGRRGMDNIGFALIVPGPYQNVPLLAGLLNANPEPIESQLHINFSMALNLL--- 478
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
LS ++K L G SL ++L E+ G M +L + ++
Sbjct: 479 ----LSQRPAEIKQL-LGCSLATFQRL-ERRGAKAAGEGGMAELMRQLAPLLAGSNCHGP 532
Query: 438 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR-RMELKRFSALKDILK 494
E +A+ R+ RR + + +A+ E ++ E+ L R R+ + F A+ +L+
Sbjct: 533 E---EAVVRRKRRRQLDGLRRRLAHELESMEQEQGLWAALTRGRVFIDMFGAMAAVLR 587
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 833 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892
LE + G P S M AWA G + +++ +GDLA L+ RT D L Q
Sbjct: 822 LLERLRQWGFHTPALPMPAASAMF-AWALGQEFADVVALYGGAEGDLAALIYRTADNLRQ 880
Query: 893 IPKLPDVDQRLQKNAVDASNVMDRPPI 919
I L D L +A +A ++ RPP+
Sbjct: 881 IASLHDTHPALSASAREAVELLLRPPV 907
>gi|345491941|ref|XP_001599855.2| PREDICTED: helicase SKI2W-like [Nasonia vitripennis]
Length = 1153
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 196/386 (50%), Gaps = 38/386 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
DV+ ++ DEVHY+++ RG VWE++II P V I+ LSATV N E A W+GQI K
Sbjct: 320 DVEYVIFDEVHYINNEDRGHVWEQVIILLPPTVNIVMLSATVPNPLEFAHWVGQIKRRKM 379
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T K L L+D+ GK + + K
Sbjct: 380 YVISTVKRPVPLQHYLYTGCDKKSKDQLFLLVDKDGKFIRSSIKEAIAIKKEQSANQKKS 439
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSK----NSINAIRRS------QVPQVIDT--- 182
++ ++ R+ A + ++ LS +S+ A + QV Q + T
Sbjct: 440 QQTKYQHQREQAKQKPSLTMSPSVLKNLSAAETLDSVAAAKEEEDKLEDQVRQQMITAKD 499
Query: 183 --LW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRI 234
+W HL+S D LP + FI +R CD + +LL+ E V E K R
Sbjct: 500 KRMWVAFLDHLQSTDKLPVVIFILSRNRCDKTANAFSE-SLLNHAEQRYVGEFFDKSIRH 558
Query: 235 LYPDAVREPAIKG---LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
L + P ++ LLK G+ HH+G LPI K +E LFQ+G+VKV+FATET A G+N
Sbjct: 559 LKGTDSQLPQVRKMQRLLKLGIGVHHSGILPILKEIVEMLFQKGIVKVLFATETFAMGVN 618
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEE 347
MPA+T V S K + L E QMAGRAGRRG D G V+++ + P E ++
Sbjct: 619 MPAKTVVFDSWEKYDGNSSRNLLPTEYIQMAGRAGRRGHDETGTVIILCKKKVPEE--KD 676
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLNL 373
++ + L S+F +Y M+L+L
Sbjct: 677 LRDMVLGAPQNLESKFKVTYSMILHL 702
>gi|133930973|ref|NP_502084.2| Protein SKIH-2 [Caenorhabditis elegans]
gi|115530064|emb|CAA92767.2| Protein SKIH-2 [Caenorhabditis elegans]
Length = 1266
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 27/367 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I K
Sbjct: 398 DLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKI 457
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY-K 134
+I++ RRPVPL + T+ L ++D G+ + + Y S+ K Y K
Sbjct: 458 NVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILK----GYNDAKDSKAKIYEK 513
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
+ G++ KN N ++ + +++ D LP
Sbjct: 514 EKAGGAGGRGTQRGGGRGGGGNGGGRNWPGKNDKNI--------YLNLINYMKCSDQLPM 565
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGL----L 249
+ F+F+R+ CD Q L NL E E V L + + +E P + + L
Sbjct: 566 VVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDLCL 625
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S+ K + R
Sbjct: 626 RGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTER 685
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAG-VEPLVSQFTASY 367
L E QMAGRAGRRG+D G V+++ + + K L +G L S+F +Y
Sbjct: 686 RMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKFRVTY 745
Query: 368 GMVLNLL 374
M+LNLL
Sbjct: 746 SMILNLL 752
>gi|317124910|ref|YP_004099022.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588998|gb|ADU48295.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 959
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 210/447 (46%), Gaps = 77/447 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
M + S L + +V+DEVHYL+D RG VWEE+II+ P +V ++ LSATV+NA+E W
Sbjct: 127 MYAGSSTLEGLGWVVMDEVHYLADRFRGAVWEEVIIHLPPDVSVVSLSATVSNAEEFGAW 186
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPL-----LDEKGKHMNR----KLSLN--- 121
+ ++ G T +I S RPVPL + +L L ++ +G+ + ++S+N
Sbjct: 187 LDEVRGDTAVIVSEHRPVPLWQHMMVGQSLYDLFVEETVERRGRGADEPVRAEVSVNPDL 246
Query: 122 YLQLSTSEVKPYKD-----------------------------GGSRRRNSRKHADMNSN 152
+ +E + D GG RR S +
Sbjct: 247 VHAIRGTEGRGAWDSHWSTNGRGRSRGGRGGPGGRGATRGDDWGGRGRRGSEQRGPGGGE 306
Query: 153 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 212
+ G + + A R +VI+ L +LPAI FIF+R GC+AAV L
Sbjct: 307 ---AARGFSRGGRPGGGATR----AEVIE---RLDREGLLPAITFIFSRAGCEAAVGQLL 356
Query: 213 DCNL---LDECEMSEVELALKRFRILYPDAVREPA----IKGLLKGVAAHHAGCLPIWKS 265
+ D + L +R + L + + ++G+ +G AAHHAG LP ++
Sbjct: 357 ASGMRLVTDAQGAANRRLVEERVQGLAEEDLAVLGYWDFVEGITRGFAAHHAGMLPTFRE 416
Query: 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325
+EELF +G V+ VFATETLA GINMPART VL L K + +T E Q+ GRAG
Sbjct: 417 IVEELFTQGRVRAVFATETLALGINMPARTVVLEKLVKFNGESHVDITPAEYTQLTGRAG 476
Query: 326 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 385
RRGID GH V++ E L PL S F +Y M +NL+
Sbjct: 477 RRGIDIEGHAVVLWNRGLDPESVAGLASTRTYPLRSSFRPTYNMAVNLV----------- 525
Query: 386 SDDMKALQAGRSLEEARKLVEQSFGNY 412
Q GR + AR+++E SF +
Sbjct: 526 ------RQFGR--DSAREILETSFAQF 544
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 16/211 (7%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 766
E+ RL+ ++ L ++IE S + F +I ++ L + I GE +
Sbjct: 746 ERWWRLQRETEGLQRKIEGRTNSVARTFDKICELLVAMGYLGEGGEQITEHGERLRQLYT 805
Query: 767 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTTVI 820
E +L A LR + L P LAAV + L+ E G+ R W N+ + E ++
Sbjct: 806 EKDLLAAECLREGVWRQLDPPSLAAVVSMLIHEPRREDGGLAPR-WPNDD-VREAHDRML 863
Query: 821 NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 880
+ + L++ + + + D + V WASG E++ L GD
Sbjct: 864 AIWSDLEDAEGAL-------ALPMTGAPDPGIAWAVHRWASGRPLEEVLRGTELAAGDFV 916
Query: 881 RLLRRTIDLLAQIPKLPDVD-QRLQKNAVDA 910
R ++ IDLL Q+ D + QR+ + A DA
Sbjct: 917 RRCKQIIDLLGQLTDAGDRELQRVARKASDA 947
>gi|68076467|ref|XP_680153.1| helicase [Plasmodium berghei strain ANKA]
gi|56501043|emb|CAH95426.1| helicase with Zn-finger motif, putative [Plasmodium berghei]
Length = 1346
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 206/416 (49%), Gaps = 47/416 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
++ ++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K
Sbjct: 398 NIHCVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEV 457
Query: 83 L-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST-------------- 127
+ I++ +RPVPL Y +L ++DEK K + Y+++
Sbjct: 458 IAISTKKRPVPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEESGKKGKELMGS 517
Query: 128 ----------SEVKPYKDGGSRRRNSRKHADMN---SNNIVTSFGQH-------QLSKNS 167
S+ K KD ++N A+ + NN V + Q+ ++ +N
Sbjct: 518 SHGGKKKIYYSDAKNNKDNQMEKQNKTGTANNSGDKQNNTVKGYYQYCKQKQKQRMFQNE 577
Query: 168 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
N ++++ ++ + L + LP + F F+R C+ + + N LD + S+V L
Sbjct: 578 ANM--KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHL 635
Query: 228 ALKRFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+K D RE IK L K G+ HH+G LPI K +E LF +GL+KV+FAT
Sbjct: 636 FIKESASKLCDQDRELNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFAT 695
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTP 341
ET A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D+ G+V +
Sbjct: 696 ETFAMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDSYGYVYIYCSDN 755
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV----MHLSNESDDMKALQ 393
+ +++ L S+F +Y M+L LL ++ M S+ + +ALQ
Sbjct: 756 IPDQVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQINIEKMLFSSFLESCRALQ 811
>gi|326471239|gb|EGD95248.1| DEAD/DEAH box RNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1292
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 196/387 (50%), Gaps = 35/387 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPY 133
+I++ +RPVPL Y + ++D EKG K + LS + ++ +
Sbjct: 490 YVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVKAQKAAEAQA 549
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSF-------GQHQLSKNSINAIRRS----------QV 176
GG + R S T G+ Q S I I R+ Q
Sbjct: 550 ARGGHQSERGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQD 609
Query: 177 PQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSEV-ELALKR 231
V + + +LR R+MLPA F+F+++ C L + C D+ + V E +L R
Sbjct: 610 RNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTR 669
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
R+ D + ++ LL +GV HH G LPI K +E LF +GLVKV+FATET A G+N
Sbjct: 670 LRVEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKVLFATETFAMGLN 729
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K G L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 730 LPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITA 789
Query: 350 --KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 790 LRKMILGDPTKLRSQFRLTYNMMLNLL 816
>gi|240255527|ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
gi|332644703|gb|AEE78224.1| antiviral helicase SKI2 [Arabidopsis thaliana]
Length = 1347
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 193/378 (51%), Gaps = 30/378 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+ K
Sbjct: 465 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEI 524
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEK---------GKHMNRKLSLNYLQLSTSE--- 129
+T +++RPVPL L + + + K +K + N + ++ +
Sbjct: 525 RVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPKQQMG 584
Query: 130 VKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHL 186
++DG S++ + N ++ V G+ S NS N A RRS + + L
Sbjct: 585 SSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKL 644
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPDA 239
+LP + F F++ CD L +L E SE+ + K F L P
Sbjct: 645 SKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQV 704
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 705 LRLQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFD 762
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGV 356
+L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 763 ALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVIVGSA 820
Query: 357 EPLVSQFTASYGMVLNLL 374
L SQF +Y M+L+LL
Sbjct: 821 TRLESQFRLTYIMILHLL 838
>gi|340377094|ref|XP_003387065.1| PREDICTED: helicase SKI2W [Amphimedon queenslandica]
Length = 1177
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 188/359 (52%), Gaps = 27/359 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
DV+ +V DEVHY++D RG VWEE++I P V++I LSATV N E A W+G+ K
Sbjct: 363 DVEWVVFDEVHYINDTERGVVWEEVLIMLPDHVRLILLSATVPNTMEFADWVGRTKQRKI 422
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++++ +RPVPL Y T + KH +L + + V YK +R
Sbjct: 423 HVVSTLQRPVPLQHYLYTGNS---------KHTQEELFMIVGEDKKFIVPGYKQALEAKR 473
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
S D S + G+ QL+ + +S V L+ +D LP + F F++
Sbjct: 474 KS----DEKSGPKGGAKGRGQLTTAQERNVWQSLVNL-------LKKKDNLPLVAFTFSK 522
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-GVAAHH 256
+ CD L + +L + +++ K+ + + RE P + K LLK G+ HH
Sbjct: 523 KRCDDNANSLTNLDLTTREDKHKIDSFFKKSVSILKGSDRELPQVVWMKDLLKRGIGVHH 582
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LF +GLVK++FATET A G+NMPART ++ K + +L E
Sbjct: 583 SGILPIIKEIIEMLFGQGLVKLLFATETFAMGVNMPARTVAFDAIRKHDGNRNRELYPGE 642
Query: 317 LFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D G V +L +T + + K++ L SQF +Y M++N+L
Sbjct: 643 YVQMAGRAGRRGLDTTGTVIILCKTDVPESGDLVKMILGSPGVLESQFRLTYSMLMNIL 701
>gi|326479334|gb|EGE03344.1| DEAD/DEAH box RNA helicase Ski2 [Trichophyton equinum CBS 127.97]
Length = 1222
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 196/387 (50%), Gaps = 35/387 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 360 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDI 419
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPY 133
+I++ +RPVPL Y + ++D EKG K + LS + ++ +
Sbjct: 420 YVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVKAQKAAEAQA 479
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSF-------GQHQLSKNSINAIRRS----------QV 176
GG + R S T G+ Q S I I R+ Q
Sbjct: 480 ARGGHQSERGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQD 539
Query: 177 PQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSEV-ELALKR 231
V + + +LR R+MLPA F+F+++ C L + C D+ + V E +L R
Sbjct: 540 RNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTR 599
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
R+ D + ++ LL +GV HH G LPI K +E LF +GLVKV+FATET A G+N
Sbjct: 600 LRVEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKVLFATETFAMGLN 659
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K G L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 660 LPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITA 719
Query: 350 --KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 720 LRKMILGDPTKLRSQFRLTYNMMLNLL 746
>gi|302652619|ref|XP_003018156.1| hypothetical protein TRV_07852 [Trichophyton verrucosum HKI 0517]
gi|291181768|gb|EFE37511.1| hypothetical protein TRV_07852 [Trichophyton verrucosum HKI 0517]
Length = 1295
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 194/387 (50%), Gaps = 35/387 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKRKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLSLNYLQLSTSEVKPYK 134
+I++ +RPVPL Y + ++D EKG K + LS + +
Sbjct: 490 YVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKAKAQKAAEAQA 549
Query: 135 DGGSRRRNSRKHADMNSNNIVTSF--------GQHQLSKNSINAIRRS----------QV 176
G + + + + + G+ Q S I I R+ Q
Sbjct: 550 ARGGHQSDRGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQD 609
Query: 177 PQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSEV-ELALKR 231
V + + +LR R+MLPA F+F+++ C L + C D+ + V E +L R
Sbjct: 610 RNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTR 669
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
RI D + ++ LL +GV HH G LPI K +E LF +GLVK++FATET A G+N
Sbjct: 670 LRIEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLN 729
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K G L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 730 LPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITT 789
Query: 350 --KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 790 LRKMILGDPTKLRSQFRLTYNMMLNLL 816
>gi|388582489|gb|EIM22794.1| antiviral helicase [Wallemia sebi CBS 633.66]
Length = 1264
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 190/379 (50%), Gaps = 28/379 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ +V DEVHY++D RG VWEE+II P+ + II LSATV NA E A W+G+ K
Sbjct: 404 DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHINIILLSATVPNAKEFADWVGRTKRKNI 463
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSE---VKPY 133
+I++ +RPVPL + + ++D GK H + +L Q E + P
Sbjct: 464 YVISTPKRPVPLEHHLFAGKEIHKIVDAGGKFLSSGHRDATDALRRKQDKEREAAGLPPV 523
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ------------VPQVID 181
+ R + + G + +IN+ +SQ Q
Sbjct: 524 QKASGGPRGGGRGGGRGGGRTPANMGATGAHR-AINSYNKSQGANRGGGNASSGGNQNHH 582
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAV 240
+ +L+ +D+LP + F F++R C+ L +LL E SEV + ++R L
Sbjct: 583 LVQYLKKKDLLPVVIFTFSKRKCEEHASGLGGMDLLSAAEKSEVHITVERSISRLRGSDK 642
Query: 241 REPAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ P I + LL +G+A HH G LPI K +E LF RGLVKV+FATET A G+NMPAR+
Sbjct: 643 QLPQISRMRDLLGRGLAVHHGGLLPIVKEIVELLFGRGLVKVLFATETFAMGVNMPARSV 702
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
S + K L E QM+GRAGRRG+D G V+++ + + G+
Sbjct: 703 AFSGIRKHDGKSFRDLLPGEYTQMSGRAGRRGLDATGVVIIMTNDNIPETTTLQQMILGI 762
Query: 357 E-PLVSQFTASYGMVLNLL 374
L SQF ++ ++LNLL
Sbjct: 763 PGKLNSQFRLTFNLILNLL 781
>gi|403166078|ref|XP_003325991.2| hypothetical protein PGTG_07821 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166060|gb|EFP81572.2| hypothetical protein PGTG_07821 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1289
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 192/394 (48%), Gaps = 55/394 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ +V DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 417 DVEFVVFDEVHYINDSERGVVWEEVIIMLPAHVTIILLSATVPNTKEFADWVGRTKRKDI 476
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL-----SLNYLQLSTSEVK---PY 133
+I++ +RPVPL + + ++D KG+ +++ S+ LQ+ E P
Sbjct: 477 YVISTPKRPVPLEHFLYANKEIHKIVDAKGEFLSQGWKDAIESMKRLQVKEREASGQAPL 536
Query: 134 K-------DGGSRRRNSRKHADMNSNN------------------IVTSFGQHQLSKNSI 168
G +R R AD S HQ +N
Sbjct: 537 TRLGHNAAKQGPQRGQQRGRADKRGGRGSQSSSHFSSAMSRGGGGGPNSGRGHQEDQN-- 594
Query: 169 NAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA 228
+ + + L+ +++LP + F F+++ C+ + + +L E SE+ +
Sbjct: 595 ---------RWVHLVGMLKKKELLPVVAFTFSKKRCEENATSMPNTDLCSAKEKSEIHIV 645
Query: 229 LKR--FRILYPDAVREPAIKG---LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
++R R+ D I+ L +G+A HH G LPI K +E LF RGLVK++FATE
Sbjct: 646 IERSLTRLNGTDKKLPQIIRMRDLLARGIAVHHGGLLPIVKEVVEILFARGLVKILFATE 705
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QT 340
T A G+NMPAR V S + K +L S E QM+GRAGRRG+D+ G V+++ +
Sbjct: 706 TFAMGVNMPARCVVFSGIQKHDGRSFRELLSGEYTQMSGRAGRRGLDSTGVVIIICGNEV 765
Query: 341 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
P K++ L SQF +Y MVLNLL
Sbjct: 766 P--DTVGLHKMILGPATKLQSQFRLTYNMVLNLL 797
>gi|387016320|gb|AFJ50279.1| Helicase SKI2W-like [Crotalus adamanteus]
Length = 1274
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 186/374 (49%), Gaps = 51/374 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HG 79
L D++ ++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+I
Sbjct: 436 LRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRK 495
Query: 80 KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
K +I++ +RPVPL Y T+ L L+D +G + + Y
Sbjct: 496 KIYVISTLKRPVPLEHYLYTGNSQKTQKELFLLVDARGTFLTKGY--------------Y 541
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRS 188
+++ S KH+ +FG Q + P +W LR
Sbjct: 542 DAVEAKKERSSKHSQ--------TFGAKQ-------PMHAGAGPGQDKNIWLSLIDMLRK 586
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG 247
+D LP + F F+R CD L +L E SE+ + ++ R+ P +
Sbjct: 587 KDQLPVVAFTFSRNRCDENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLH 646
Query: 248 LL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
++ +G+ HH+G LPI K +E LF +GLVK++FATET A G+NMPART V +S+ K
Sbjct: 647 MVDLLKRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRK 706
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLV 360
+ L E QMAGRAGRRG+D G V+++ Q P + +++ L
Sbjct: 707 HDGANFRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPE--MSDLHRMMLGKPTRLQ 764
Query: 361 SQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 765 SQFRLTYTMILNLL 778
>gi|327266504|ref|XP_003218045.1| PREDICTED: helicase SKI2W-like [Anolis carolinensis]
Length = 1273
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 185/374 (49%), Gaps = 51/374 (13%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HG 79
L D++ ++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+I
Sbjct: 435 LRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRK 494
Query: 80 KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
K +I++ +RPVPL Y T+ L L+D +G + + Y
Sbjct: 495 KIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGY--------------Y 540
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRS 188
+++ + KH+ +FG Q + P +W LR
Sbjct: 541 DAVEAKKERASKHSQ--------TFGAKQ-------PMHAGAGPGQDKNIWLSLIDMLRK 585
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG 247
+D LP + F F+R CD L +L E SE+ + ++ R+ P +
Sbjct: 586 KDQLPVVAFTFSRNRCDENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLH 645
Query: 248 LL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
++ +G+ HH+G LPI K +E LF +GLVK++FATET A G+NMPART V S+ K
Sbjct: 646 MVDLLKRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDSIRK 705
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLV 360
+ L E QMAGRAGRRG+D G V+++ Q P + +++ L
Sbjct: 706 HDGTNFRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPEMA--DLHRMMLGKPTQLQ 763
Query: 361 SQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 764 SQFRLTYTMILNLL 777
>gi|6522577|emb|CAB61942.1| putative helicase [Arabidopsis thaliana]
Length = 1347
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 193/378 (51%), Gaps = 30/378 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+ K
Sbjct: 456 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEI 515
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEK---------GKHMNRKLSLNYLQLSTSE--- 129
+T +++RPVPL L + + + K +K + N + ++ +
Sbjct: 516 RVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPKQQMG 575
Query: 130 VKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHL 186
++DG S++ + N ++ V G+ S NS N A RRS + + L
Sbjct: 576 SSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKL 635
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPDA 239
+LP + F F++ CD L +L E SE+ + K F L P
Sbjct: 636 SKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQV 695
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 696 LRLQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFD 753
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGV 356
+L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 754 ALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVIVGSA 811
Query: 357 EPLVSQFTASYGMVLNLL 374
L SQF +Y M+L+LL
Sbjct: 812 TRLESQFRLTYIMILHLL 829
>gi|308491074|ref|XP_003107728.1| hypothetical protein CRE_12774 [Caenorhabditis remanei]
gi|308249675|gb|EFO93627.1| hypothetical protein CRE_12774 [Caenorhabditis remanei]
Length = 1297
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 190/371 (51%), Gaps = 23/371 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I +
Sbjct: 402 DLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRRI 461
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RRPVPL + T+ L ++D G+ + + Y S+ K Y+
Sbjct: 462 NVISTERRPVPLEHFLYTGQDGKTQKDLFKIIDRNGQFLLK----GYNDSKDSKAKIYEK 517
Query: 136 G-----GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
G + + Q S N ++ ++ + +R D
Sbjct: 518 DKVVGPGGAAGRGNQRGGARGGGASSRSNQGGNSGGVKNWPGKNDKNIYLNLINFMRCSD 577
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIK 246
LP + F+F+R+ CD Q L NL E E V ++R + + + +K
Sbjct: 578 QLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRTFFSQCIQRLKGSDKELPQVLTMK 637
Query: 247 GL-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
L L+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S++K
Sbjct: 638 ELCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSVTKHD 697
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAG-VEPLVSQF 363
S R L E QMAGRAGRRG+D+ G VV++ + + K L +G L S+F
Sbjct: 698 GSERRLLNPGEYTQMAGRAGRRGLDSTGTVVIICKDQTIPLPDVLKNLISGQALRLESKF 757
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 758 RVTYSMILNLL 768
>gi|68479463|ref|XP_716263.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
gi|68479634|ref|XP_716180.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437839|gb|EAK97179.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437927|gb|EAK97266.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
Length = 1245
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 194/399 (48%), Gaps = 74/399 (18%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 397 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 456
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGSR 139
+I++ +RPVPL + S K L ++D NR+ N E + +KD G
Sbjct: 457 YVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRRFQEN-------EFRKHKDLLEGGG 504
Query: 140 RRNSRKHADM------------------------------NSNNIVTS----FGQHQLSK 165
++N M N+N S FG+ K
Sbjct: 505 KKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQGRGGNANRGNFSGPKRFGRDGPKK 564
Query: 166 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 225
N+ ID + +++S ++LPA+ F+F+++ C+ L + + E SE+
Sbjct: 565 NTW-----------IDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEI 613
Query: 226 ELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
+ + R RE P I + L +G+A HH G LPI K IE LF + LVKV+F
Sbjct: 614 HMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLF 673
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ- 339
ATET A G+N+P RT + SS+ K L E QM+GRAGRRG+D G V+++
Sbjct: 674 ATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAY 733
Query: 340 ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+P + E ++ L SQF +Y M+LNLL
Sbjct: 734 DDPLSPTDFKE----VVLGTPTKLSSQFRLTYSMILNLL 768
>gi|222622217|gb|EEE56349.1| hypothetical protein OsJ_05464 [Oryza sativa Japonica Group]
Length = 1452
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 192/375 (51%), Gaps = 25/375 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV N E A WIG+ K
Sbjct: 568 DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTKQKKI 627
Query: 83 LITSS-RRPVPL---------TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+TS+ +RPVPL + K A L + K + +K + + L + KP
Sbjct: 628 HVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSSKLGMKPGS-KP 686
Query: 133 YKDG---GSRRRN---SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 186
G++ RN S + D + + + S + RRS+ + + +L
Sbjct: 687 GTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSESSFWMPLINNL 746
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI 245
+ ++P + F F++ CD + + + +L E SE+ L K F L P +
Sbjct: 747 LKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRLKGSDRNLPQV 806
Query: 246 KG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V SL
Sbjct: 807 VGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDSL 866
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--L 359
K +L E QMAGRAGRRG+DN G V+++ E K L G +P L
Sbjct: 867 RKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLIVG-KPTRL 925
Query: 360 VSQFTASYGMVLNLL 374
SQF +Y M+L+LL
Sbjct: 926 ESQFRLTYTMILHLL 940
>gi|356569566|ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 195/379 (51%), Gaps = 32/379 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 457 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKEI 516
Query: 83 LIT-SSRRPVPLT---------WYFSTKTALLPL-LDEKGKHMNRKLSLNYLQLSTSE-- 129
+T +++RPVPL + LP L K +RK +L S +
Sbjct: 517 RVTGTTKRPVPLEHCLFYSGELYKICESEKFLPQGLKAAKKEASRKKNLTAGGGSGPKPG 576
Query: 130 VKPYKDGGS-RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHL 186
+ P D ++R + H + N + +Q + N + +RR+ ++ + L
Sbjct: 577 ISPGHDKARVQKRENTSHTKHHGANFYGTGRGYQNNGNGQSNWELRRADASMLLMLINKL 636
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPDA 239
+ +LP + F F++ CD + L +L E SE+ L K F L P
Sbjct: 637 SKKSLLPVVIFCFSKNRCDKSADSLTGTDLTSSSEKSEIRLFCDKAFSRLKGSDKNLPQV 696
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
VR ++ LL+ G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 697 VR---VQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVF 753
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAG 355
+L K QL + E QMAGRAGRRG+D G V+L+ + P E E ++
Sbjct: 754 DTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLDKIGTVILMCRDELPEESDLE--PVIVGS 811
Query: 356 VEPLVSQFTASYGMVLNLL 374
L SQF +Y M+L+LL
Sbjct: 812 ATRLESQFRLTYIMILHLL 830
>gi|389580181|ref|ZP_10170208.1| superfamily II RNA helicase [Desulfobacter postgatei 2ac9]
gi|389401816|gb|EIM64038.1| superfamily II RNA helicase [Desulfobacter postgatei 2ac9]
Length = 731
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 240/512 (46%), Gaps = 85/512 (16%)
Query: 25 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-EL 83
D+I+LDE H+L D RG VWEEI+IY P + ++ LSAT+ N D++AGW+ I K ++
Sbjct: 176 DLIILDEAHFLGDAERGVVWEEIMIYLPVRIPLLLLSATIGNPDQIAGWLSSIRDKACKV 235
Query: 84 ITSSRRPVPL-TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ ++ RPVPL +F L PLL++ K+ G+R R
Sbjct: 236 VENTNRPVPLFPLFFHPSGTLYPLLEKIEKN-----------------------GNRTRL 272
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+K V F Q S + ++P+ D L L D+LPAI+F+ +R
Sbjct: 273 YKK---------VYKFNQ---SSKPLLLAPPGRLPKFSDILKVLSHFDLLPAIFFLKSRV 320
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILY--PDAVREPAIKGLLK-GVAAHHAGC 259
CD A++ L D +LL + L + + P P L + G AAHH+G
Sbjct: 321 ECDRAIK-LCDGSLLKHAPERKQALMERLVELTADNPHLSAHPQRPYLEETGTAAHHSGH 379
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +E L GL+ +FAT T+AAG+N PAR+ V+ + + + LT++E Q
Sbjct: 380 LPAWKVVVETLMAEGLLDAMFATSTVAAGVNFPARSVVILNSDRFNGRDFLSLTTSEFQQ 439
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
MAGRAGRRG+DN G ++ Y KL+ A + SQ + MVLNLL
Sbjct: 440 MAGRAGRRGMDNIGFATILPGKYMDVSLVAKLINAPPLNVDSQIKIDFSMVLNLL----- 494
Query: 380 MHLSNESDDMKAL--------------QAGRSLEEARK-------------------LVE 406
LSN + ++ L +AG+S +ARK L++
Sbjct: 495 --LSNTPEQVRTLLEKSFASYLIAIGAKAGKSGRKARKKFGNDMEFLWLDFTEHMDFLIQ 552
Query: 407 QSFGNYVGSNVMLAAKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 464
+ F G+N +D + K++ ++ +L ++ D + + L A N +
Sbjct: 553 EGFVTPEGANPCTLTEDGIWASKLRIDSPLLVAQTLRDKLLPERDPALLAAMMATFVN-E 611
Query: 465 EELKAEKRFRTELRRRMELKRFSALKDILKDF 496
+E K + F T L ++++ F L+ LK F
Sbjct: 612 KEFKDDMLFNTALSKQLK-DAFLLLRRGLKPF 642
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG-IKVRLWKNNSSIYEPS 816
G A+ +R ++ L +A LR+K+L + PA LAA+ A+ V+E K + N + S
Sbjct: 570 GIWASKLRIDSPLLVAQTLRDKLLPERDPALLAAMMATFVNEKEFKDDMLFNTAL----S 625
Query: 817 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 876
+ + +L F + G P L Q + +V AWA W E+M +
Sbjct: 626 KQLKDAFLLLRRGLKPFAMKMLQSGFPAPN-LFIQPAALVYAWAHDTPWDELMRKSDFAE 684
Query: 877 GDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
GD ARL+ RT + L Q+ L K A + +++ + P+
Sbjct: 685 GDFARLVLRTSENLRQMTHLHQDFPVFAKTAAQSIDMILKTPV 727
>gi|123399499|ref|XP_001301484.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121882670|gb|EAX88554.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 963
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 185/360 (51%), Gaps = 34/360 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA E + WI IH + ++
Sbjct: 166 VIYDEIHYMKDPERGVVWEESIIMLPDSVHFVFLSATIPNAREFSEWISSIHHQPCHVVY 225
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
++ RP PL +Y S+ + P L ++G+ L + + S+VKP +D
Sbjct: 226 TNHRPTPLKFYISSNGSEAPALIKEGEG---PLDTVAVHTAYSKVKPEED---------- 272
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWHLRSRDMLPAIWFIFNRRGC 204
+I +L+ + R ++ +T L + D P I F F R+ C
Sbjct: 273 ------KSIYKGISVTKLNSGESKPVSRQTTDKLCAETAAWLVTHDQAPLIVFAFGRKLC 326
Query: 205 DAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVRE-PAIKG----LLKGVAAH 255
D L + + + E ++ ++A+++ D+ +E P I+ L++G+ H
Sbjct: 327 DDLPTNLNGKSFVTQEESEQINQMIDVAIEKLE----DSEKELPQIQTMRNLLVRGIGVH 382
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H G +P+ K IE LFQ GL+K++FATET A G+NMPAR+ + SL K R LTS+
Sbjct: 383 HGGLIPLLKELIELLFQYGLLKILFATETFAMGLNMPARSVLFHSLFKFDGDKRRLLTSS 442
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E QM+GRAGRR D G+V+L T C LL +PL S+F +Y M+L+LL
Sbjct: 443 EFIQMSGRAGRRNNDRFGNVILTCTGEPQERPFCDLLTGIAQPLNSEFHVTYHMLLSLLT 502
>gi|321468891|gb|EFX79874.1| hypothetical protein DAPPUDRAFT_304359 [Daphnia pulex]
Length = 1192
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 198/400 (49%), Gaps = 37/400 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV N E A W+G+ G K
Sbjct: 365 DLEWVIFDEVHYINDSERGVVWEEVLILLPSHVNIVMLSATVPNTSEFATWVGRTKGRKM 424
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL Y T L K K R L +N + P +
Sbjct: 425 YVISTLKRPVPLEHYLYTG------LTGKSKD-ERFLIVN----AEGAFVPKGYMAAMEA 473
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
K D+ + G+ + + + +I L HL+ ++ LP + F F+R
Sbjct: 474 KKSKEKDVKPGGAAAAAGRGRGGQAQEKNL-------LIALLDHLKKQEQLPVVAFTFSR 526
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAIKG----LLKGVAAH 255
CD L +L+ E + ++ R+ D + P + L +G+ H
Sbjct: 527 NRCDQNSSLLTSVDLVTAEERGRIHQFFQKCVSRLKGSDQ-KLPQVTNMQTLLKRGIGVH 585
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K +E LFQ GLVK++FATET A G+NMPART V ++ K +G L
Sbjct: 586 HSGILPILKEVVEMLFQEGLVKLLFATETFAMGVNMPARTVVFDTIRKHDGTGFRNLLPA 645
Query: 316 ELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QMAGRAGRRG+D G V +L + + E ++ L SQF +Y M+LNLL
Sbjct: 646 EYIQMAGRAGRRGLDTTGTVIILCKNDVPESSELHAMMLGQPMKLSSQFRVTYSMILNLL 705
Query: 375 AGAKVMHLSNE-------SDDMKALQAGRSLEEARKLVEQ 407
+V HL E +D + + G+ E+ +KL +Q
Sbjct: 706 ---RVEHLRVEDMMKRSFGEDHQQSKLGKVKEQLQKLYDQ 742
>gi|301063825|ref|ZP_07204315.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
gi|300442074|gb|EFK06349.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
Length = 637
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 193/392 (49%), Gaps = 51/392 (13%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
D+++LDE HYLSD RG VWEE++IY P V+++ LSAT++N +E+ W+ Q+ G +
Sbjct: 143 TDMVILDEAHYLSDPDRGVVWEEVLIYLPSRVRLLLLSATISNPEEVCAWLKQVRGVSNR 202
Query: 84 ITSSR-RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ SR RPVPL F L+ +L K + LS +VK + + RR
Sbjct: 203 VVLSRERPVPLKTLFLFPDGLVTVLGSK-----KGLS--------PKVKKFLNSKEGRRG 249
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
RRS+ + L LR D+LPAI+F+ +R
Sbjct: 250 -----------------------------RRSEKIEYGRILACLRKLDLLPAIFFLKSRA 280
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELA--LKRFRILYPDAVREPAIKGLLKG-VAAHHAGC 259
CD Q L C ++ + E + +K F YP IK LL V +HH G
Sbjct: 281 DCD---QALVTCPVVKKPPGIERRMKGLVKAFVREYPHLEGHRQIKPLLNSQVGSHHGGQ 337
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK IE++ +GL++ +F+T T+AAG+N PAR+ VL + LT L Q
Sbjct: 338 LPYWKVLIEQMMNKGLLEAIFSTSTVAAGVNFPARSVVLFQSDRYNGREFADLTPTALHQ 397
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M GRAGRRG+DN G ++V Y+ +LL + +PL+SQ ++ M LNLL
Sbjct: 398 MVGRAGRRGMDNIGFALVVPGYYQKPALIYELLSSPADPLLSQIHINFSMTLNLLLSHTP 457
Query: 380 MHLSN--ESDDMKALQAGRSLEEARKLVEQSF 409
+ + + E + GR ++ R L EQ+
Sbjct: 458 LEVKDLLERSFAAFQEKGRGGDDGRWLKEQTL 489
>gi|238880251|gb|EEQ43889.1| antiviral helicase SKI2 [Candida albicans WO-1]
Length = 1246
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 194/399 (48%), Gaps = 74/399 (18%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 398 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 457
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGSR 139
+I++ +RPVPL + S K L ++D NR+ N E + +KD G
Sbjct: 458 YVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRRFQEN-------EFRKHKDLLEGGG 505
Query: 140 RRNSRKHADM------------------------------NSNNIVTS----FGQHQLSK 165
++N M N+N S FG+ K
Sbjct: 506 KKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQGRGGNANRGNFSGPKRFGRDGPKK 565
Query: 166 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 225
N+ ID + +++S ++LPA+ F+F+++ C+ L + + E SE+
Sbjct: 566 NTW-----------IDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEI 614
Query: 226 ELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 280
+ + R RE P I + L +G+A HH G LPI K IE LF + LVKV+F
Sbjct: 615 HMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLF 674
Query: 281 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ- 339
ATET A G+N+P RT + SS+ K L E QM+GRAGRRG+D G V+++
Sbjct: 675 ATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAY 734
Query: 340 ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+P + E ++ L SQF +Y M+LNLL
Sbjct: 735 DDPLSPTDFKE----VVLGTPTKLSSQFRLTYSMILNLL 769
>gi|350409639|ref|XP_003488801.1| PREDICTED: helicase SKI2W-like [Bombus impatiens]
Length = 1232
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 188/383 (49%), Gaps = 70/383 (18%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HG 79
L D++ ++ DEVHY+++ RG VWEE +I P+ V ++ LSATV N A W+G+
Sbjct: 395 LRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTLVMLSATVPNPLIFADWVGRTKKK 454
Query: 80 KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
KT +I++ +RPVPL Y TK +LDE G +
Sbjct: 455 KTYVISTLKRPVPLQHYLYTGTDGKTKDNKFLVLDESGHFL------------------- 495
Query: 134 KDG---GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----H 185
DG + +N + ++ N+ ++ Q Q++ P+ LW H
Sbjct: 496 LDGWYKATTAQNPKNQSNKNAKDVKRIPTQRQMT------------PKQEQVLWNAFISH 543
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245
LR+++MLP + F+ +R+ CD + L + +L E E + R + + +R +
Sbjct: 544 LRTQNMLPVVVFMLSRKRCDMSAILLRNVDLTTETEKHTI-------RTFFQNNIRH--L 594
Query: 246 KG--------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
KG L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NM
Sbjct: 595 KGTDRQLPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNM 654
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCK 350
PART V S+ K + L +E QMAGRAGRRG D G V V+ +T E
Sbjct: 655 PARTVVFDSIKKYDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCRTLVPHFNELQN 714
Query: 351 LLFAGVEPLVSQFTASYGMVLNL 373
++ + L S+F +Y MVLNL
Sbjct: 715 MMCGQAQNLESKFKVTYSMVLNL 737
>gi|389584791|dbj|GAB67523.1| ATP dependent RNA helicase [Plasmodium cynomolgi strain B]
Length = 1401
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 176/356 (49%), Gaps = 32/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I + ++
Sbjct: 361 VIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVY 420
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 421 TDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIK------------ 463
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
N ++ GQHQ + N + V + + SR+ P I F F+++
Sbjct: 464 -------EKNNMSEDGQHQNGNSKHNRRAKKNVYDIEKIVQMCHSRNYTPLIIFAFSKKE 516
Query: 204 CDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAG 258
C+ + +L D+ E + EL +IL D P ++ LL+G+ HH G
Sbjct: 517 CEINATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGG 576
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS E
Sbjct: 577 LLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGVEKRLITSGEYI 636
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D+RG V+++ E KL LVSQF Y M+LNLL
Sbjct: 637 QMAGRAGRRGLDDRGIVIIMLDSPLHWREAEKLFVGEANRLVSQFHLGYNMILNLL 692
>gi|328774102|gb|EGF84139.1| hypothetical protein BATDEDRAFT_9076, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 868
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 189/364 (51%), Gaps = 22/364 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 136 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPSHVSLILLSATVPNTKEFADWVGRTKQKDI 195
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL Y + ++D + Y ++ + + K R R
Sbjct: 196 YVISTLKRPVPLEHYLYFEKDCYKIVDSTKTFIPAGYKKAYDAVNPPKKEVVKSDSGRGR 255
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL----RSRDMLPAIWF 197
+ + +S Q+++ S ++ + P + HL + R +LPAI F
Sbjct: 256 GAGRGGGQSS----------QVARPSQSSGKSYGGPSDKNLYTHLIGMLKKRVLLPAIIF 305
Query: 198 IFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKG 251
F++R C+ L + +L L E SE+ + ++R + + RE P + + L +G
Sbjct: 306 TFSKRKCEEYANTLSNTDLTLGSSEKSEIHVFIERSLVCLKGSDRELPQVMRMRELLGRG 365
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HH+G LPI K +E LF RGLVKV+FATET A G+N PA+ V S + K G
Sbjct: 366 IAVHHSGLLPILKEMVEILFTRGLVKVLFATETFAMGVNAPAKCVVFSMIRKHDGVGFRN 425
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMV 370
L E QM+GRAGRRG+D+ G V++ + + + G L SQF +Y M+
Sbjct: 426 LLPGEYTQMSGRAGRRGLDDTGMVIIANSNDIPDQTTLNQMILGTPTKLASQFRVTYNMI 485
Query: 371 LNLL 374
LNLL
Sbjct: 486 LNLL 489
>gi|409051951|gb|EKM61427.1| hypothetical protein PHACADRAFT_156677 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1253
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 188/379 (49%), Gaps = 30/379 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 395 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 454
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEK-----------GKHMNRKLSLNYLQLSTSEV 130
+I++++RPVPL + ++D + G+ + RK + + +
Sbjct: 455 YVISTAKRPVPLEHFLYAGRDFHKIVDAERHFVGEGYKAAGEALRRKQDK---EREAAGL 511
Query: 131 KPYKDGGSR----RRNSR--KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VID 181
P + G+R +R R + G ++ + R P +
Sbjct: 512 PPVQRLGARAAAPQRGGRGAPTGRGGQRGGTPARGATPAARGPTGSGRTFHQPDKNLYVH 571
Query: 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241
+ +L+ + +LP + F F+++ C+ L + +L E SEV + +++ DA R
Sbjct: 572 LIGNLKKKSLLPVVVFTFSKKRCEENAGTLTNLDLSTSVEKSEVHVMIEKALSRLKDADR 631
Query: 242 E-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
P I+ L +G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA++
Sbjct: 632 RLPQIRRMRDLLSRGIGVHHGGLLPIVKEAVEMLFARGLVKVLFATETFAMGVNMPAKSV 691
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
V S K ++ E QMAGRAGRRG+D G VVLV + + + G
Sbjct: 692 VFSHTRKHDGKSFREVLPGEYTQMAGRAGRRGLDATGTVVLVANDELPEQTTLQTMILGT 751
Query: 357 E-PLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 752 PLKLQSQFRLTYNMILNLL 770
>gi|336376932|gb|EGO05267.1| hypothetical protein SERLA73DRAFT_68899 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1291
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 186/380 (48%), Gaps = 32/380 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 440 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 499
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKL----------SL 120
+I++++RPVPL Y ++D + G+ + RK +
Sbjct: 500 YVISTAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAGLPPV 559
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ + + + GG+ R ++ A NN G+ I+ + +
Sbjct: 560 QRVGARGAAPRGGQRGGTPTRGGQRGA--TPNNRGAPPGRGGGPSRIIHTGADKNL--YV 615
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDA 239
L HL+ + +LP + F F+++ C+ L + +L E SE+ +A+ K L
Sbjct: 616 HLLNHLQKKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRLKGTD 675
Query: 240 VREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
+ P I L +G+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR
Sbjct: 676 KKLPQISRMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNMPARC 735
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V S + K + E QMAGRAGRRG+D G V++V + + + G
Sbjct: 736 VVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQHMMLG 795
Query: 356 VEP-LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 796 TPAKLQSQFRLTYNMILNLL 815
>gi|351713165|gb|EHB16084.1| Helicase SKI2W [Heterocephalus glaber]
Length = 1238
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 182/380 (47%), Gaps = 53/380 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG--- 79
D++ ++ DEVHY++D RG VWEE+ I P V +I LSATV NA E A WIG
Sbjct: 428 DLEWVIFDEVHYINDAERGVVWEEVFIMLPDHVSVILLSATVPNALEFADWIGCCRSSGP 487
Query: 80 -------------KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSL 120
+ +I++ RPVPL + T+ L LLD +G +
Sbjct: 488 CLWTSPPRRLKRRQIYVISTLTRPVPLEHHLFTGNSPKTQGELFLLLDSRGAFHTKGY-- 545
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
Y +++ KHA +FG Q + + A R +
Sbjct: 546 ------------YAAVEAKKERMSKHAQ--------TFGAKQPGRQAGPAQDRGVY---L 582
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240
L LR+R LP + F F+R CD L +L E SE+ L L+R +
Sbjct: 583 SLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 642
Query: 241 RE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
R+ P + + L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART
Sbjct: 643 RQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 702
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFA 354
V S+ K S L E QMAGRAGRRG+D G VVL+ + + +++
Sbjct: 703 VVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVVLLCKARVPEMADLHRMMMG 762
Query: 355 GVEPLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 763 KPSQLQSQFRLTYTMILNLL 782
>gi|427783323|gb|JAA57113.1| Putative nuclear exosomal rna helicase mtr4 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 1142
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 188/370 (50%), Gaps = 60/370 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DE HY++D RG VWEE++I P V ++ LSATV NA LA WIG+I K
Sbjct: 359 DLEWVIFDECHYINDPDRGVVWEEVLIMLPSHVGLVLLSATVPNALSLANWIGRIKERKL 418
Query: 82 ELITSSRRPVPLT--WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+I +++RPVPL YF+ +T L+ LD K + Y +R
Sbjct: 419 YVICTTQRPVPLEHHLYFNQETFLI--LDATNKF---------------QTASYMKACAR 461
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ + K + + + R Q + HLR D LPAI F
Sbjct: 462 RKETMK------------------ATRTYDDKTRYQ-----GLIQHLRKADRLPAICFTL 498
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-------RILYPDAVREP---AIKGLL 249
+RR CD Q L+ +L +E + A++RF R+ D R P +++GLL
Sbjct: 499 SRRRCDENAQLLQSLDL----TTAEEKGAVRRFLQNNVIARLSRADQ-RLPQLRSLRGLL 553
Query: 250 K-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+ G HH+G LPI K +E LFQRGLVKV+FATET A G+NMPART V S+ K
Sbjct: 554 EAGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGIS 613
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG D G V+L+ + + + ++ L S+F +Y
Sbjct: 614 NRDLLPAEYIQMAGRAGRRGKDATGTVLLLCKGDVPESSQLQAMMLGRPTELQSRFRVTY 673
Query: 368 GMVLNLLAGA 377
M+LNL A A
Sbjct: 674 SMILNLKAQA 683
>gi|393218249|gb|EJD03737.1| antiviral helicase [Fomitiporia mediterranea MF3/22]
Length = 1052
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 185/401 (46%), Gaps = 75/401 (18%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 206 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVSIILLSATVPNTKEFADWVGRTKKKDI 265
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG-SRR 140
+I++ RPVPL Y + ++D KG+ LST YKD G + R
Sbjct: 266 YVISTPSRPVPLEHYLYAGRDIHKIVDSKGQF-----------LSTG----YKDAGEALR 310
Query: 141 RNSRKHADMNSNNIVTSFGQ---------------------------------HQLSKNS 167
R K + V G HQ KN
Sbjct: 311 RKQDKEREAAGLPPVQRLGARAAAPQRGQRGVTRGRGGGARGGGGAPGGPRTFHQPDKN- 369
Query: 168 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-- 225
+ + LR ++LP + F F++R C+ L + +L E SEV
Sbjct: 370 ----------LYVHLVGFLRKSNLLPVVVFTFSKRRCEENAATLTNVDLSSASERSEVHV 419
Query: 226 --ELALKRFR-----ILYPDAVREPAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRG 274
E AL R + IL + P I + LL +G+ HH G LPI K +E LF RG
Sbjct: 420 TIEKALARLKGRQTFILCCTDKKLPQIGRMRDLLSRGIGVHHGGLLPIVKEVVEILFARG 479
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
LVKV+FATET A G+NMPA+ V S + K L + E QMAGRAGRRG+D G
Sbjct: 480 LVKVLFATETFAMGVNMPAKCVVFSGIRKHDGKSFRTLEAGEYTQMAGRAGRRGLDTTGT 539
Query: 335 VVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 374
V++ + + + G L SQF +Y M+LNLL
Sbjct: 540 VIITASDEVPEITTLQTMMLGTPMRLQSQFRLTYNMILNLL 580
>gi|336389976|gb|EGO31119.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 1209
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 186/380 (48%), Gaps = 32/380 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 358 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 417
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKL----------SL 120
+I++++RPVPL Y ++D + G+ + RK +
Sbjct: 418 YVISTAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAGLPPV 477
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
+ + + + GG+ R ++ A NN G+ I+ + +
Sbjct: 478 QRVGARGAAPRGGQRGGTPTRGGQRGA--TPNNRGAPPGRGGGPSRIIHTGADKNL--YV 533
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDA 239
L HL+ + +LP + F F+++ C+ L + +L E SE+ +A+ K L
Sbjct: 534 HLLNHLQKKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRLKGTD 593
Query: 240 VREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
+ P I L +G+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR
Sbjct: 594 KKLPQISRMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNMPARC 653
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V S + K + E QMAGRAGRRG+D G V++V + + + G
Sbjct: 654 VVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQHMMLG 713
Query: 356 VEP-LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 714 TPAKLQSQFRLTYNMILNLL 733
>gi|170034314|ref|XP_001845019.1| antiviral helicase SKI2 [Culex quinquefasciatus]
gi|167875652|gb|EDS39035.1| antiviral helicase SKI2 [Culex quinquefasciatus]
Length = 1216
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 180/366 (49%), Gaps = 42/366 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV N E A W+G+ K
Sbjct: 373 DLEYVIFDEVHYITDADRGHVWEEVLILLPDHVCIVMLSATVPNTLEFANWVGKTKKKRV 432
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++++ +RPVPL Y T GK S + + L E + G R+
Sbjct: 433 HVVSTPKRPVPLKHYLYTGCG--------GK------SKDDMFLVVDEQSKFLIDGFRKA 478
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIW 196
A M+ N +KNS + +Q + TLW L+ D LP +
Sbjct: 479 KEAITARMSKN----------ANKNSGRPAQFNQKQE--QTLWVGLIDQLQKNDKLPVVA 526
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECE----MSEVELALKRFRILYPDAVREPAIK---GLL 249
F +R CD L C+L E S +L L++ + PD + I+ L
Sbjct: 527 FTLSRNRCDNNANALMSCDLTTGREKYLITSFFQLCLQKLK--PPDRMLPQVIQVQNCLQ 584
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH+G LPI K +E LF RGLVK++FATET A G+NMPART + S K
Sbjct: 585 RGIGIHHSGILPILKEIVEMLFARGLVKILFATETFAMGVNMPARTVIFDSTKKFDGQTS 644
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L E QMAGRAGRRG+D G V+++ + G E ++ L SQF +Y
Sbjct: 645 RMLQPAEYTQMAGRAGRRGLDKNGTVIIICKMGVAGESELQNMILGKPMRLESQFRLTYA 704
Query: 369 MVLNLL 374
M+L LL
Sbjct: 705 MILYLL 710
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%)
Query: 710 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 769
K+L+ + + L ++ S + ++ V+ E + +D QV G A + G+NE
Sbjct: 992 KQLETKLEDLKYQVSYKSMSLYPDYCNKLKVLQELKYIDDMQQVAMK-GRVACEM-GQNE 1049
Query: 770 LWLA-MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 828
L + +VLRN IL DL+PA++AA+ +SLV + + + EP +I L +
Sbjct: 1050 LMITELVLRN-ILTDLQPAEIAALLSSLVFQ---------SKTEVEPK-----MIETLKK 1094
Query: 829 HRSSFLE-------LQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGD 878
R+ F E +++ +GV D G+VE WA + E+M + +G
Sbjct: 1095 ARALFEEVERDIRSVEQMYGVTDLLERDKLNFGLVEVVYEWAQNKPFSEIMDLTDIKEGI 1154
Query: 879 LARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 916
+ R +++ + L + + D L +ASN + R
Sbjct: 1155 IVRCIQQLNETLCNVKDAARIIGDPVLHSKMEEASNAIKR 1194
>gi|68076863|ref|XP_680351.1| ATP dependent RNA helicase [Plasmodium berghei strain ANKA]
gi|56501272|emb|CAH98487.1| ATP dependent RNA helicase, putative [Plasmodium berghei]
Length = 1299
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 177/355 (49%), Gaps = 31/355 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I + ++
Sbjct: 322 VIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKNQACHIVY 381
Query: 86 SSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 144
+ RP PL Y + T + + L+ ++ K+ + N+++ V KD N++
Sbjct: 382 TDYRPTPLQHYIYPTSSESVFLICDENKNFKKD---NFIK----AVNALKDKSMLDENNQ 434
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204
+ N N R + + SR+ P I F F+++ C
Sbjct: 435 SGGN-----------------NKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFSKKEC 477
Query: 205 DAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAGC 259
+ L NL D+ E + EL +IL D P ++ LL+G+ HH G
Sbjct: 478 EVNATTLHKVNLTDDSEKEIIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGL 537
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS E Q
Sbjct: 538 LPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGLEKRLITSGEYIQ 597
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
MAGRAGRRG+D+RG V+++ ++ KL LVSQF Y M+LNLL
Sbjct: 598 MAGRAGRRGLDDRGIVIIMLDSPLHWKDAEKLFVGEANRLVSQFHLGYNMILNLL 652
>gi|427793717|gb|JAA62310.1| Putative nuclear exosomal rna helicase mtr4 dead-box superfamily,
partial [Rhipicephalus pulchellus]
Length = 1160
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 188/370 (50%), Gaps = 60/370 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DE HY++D RG VWEE++I P V ++ LSATV NA LA WIG+I K
Sbjct: 377 DLEWVIFDECHYINDPDRGVVWEEVLIMLPSHVGLVLLSATVPNALSLANWIGRIKERKL 436
Query: 82 ELITSSRRPVPLT--WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+I +++RPVPL YF+ +T L+ LD K + Y +R
Sbjct: 437 YVICTTQRPVPLEHHLYFNQETFLI--LDATNKF---------------QTASYMKACAR 479
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ + K + + + R Q + HLR D LPAI F
Sbjct: 480 RKETMK------------------ATRTYDDKTRYQ-----GLIQHLRKADRLPAICFTL 516
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-------RILYPDAVREP---AIKGLL 249
+RR CD Q L+ +L +E + A++RF R+ D R P +++GLL
Sbjct: 517 SRRRCDENAQLLQSLDL----TTAEEKGAVRRFLQNNVIARLSRADQ-RLPQLRSLRGLL 571
Query: 250 K-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+ G HH+G LPI K +E LFQRGLVKV+FATET A G+NMPART V S+ K
Sbjct: 572 EAGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGIS 631
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG D G V+L+ + + + ++ L S+F +Y
Sbjct: 632 NRDLLPAEYIQMAGRAGRRGKDATGTVLLLCKGDVPESSQLQAMMLGRPTELQSRFRVTY 691
Query: 368 GMVLNLLAGA 377
M+LNL A A
Sbjct: 692 SMILNLKAQA 701
>gi|426201331|gb|EKV51254.1| hypothetical protein AGABI2DRAFT_182217 [Agaricus bisporus var.
bisporus H97]
Length = 1231
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 384 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 443
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG---- 137
+I++ +RPVPL Y ++D K ++ S L + K + G
Sbjct: 444 YVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGYSDARDALRRKQDKEREAAGLAPV 503
Query: 138 -SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRDMLPA 194
+ R +N+ ++ R + + L HL+ ++LP
Sbjct: 504 QATRGRGASARGGGANSRGSTLATRGRGGRGGGPARTIHADKNVYVHLLGHLKKENLLPV 563
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI---KGLL- 249
+ F F+++ C+ + L + +L E SEV +A+ K L + P I + LL
Sbjct: 564 VIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEKALSRLKGSDKKLPQIARMRDLLS 623
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA+ V S++ K
Sbjct: 624 RGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSNIRKHDGRNF 683
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ E QMAGRAGRRG+D G V +LV +L L+SQF +Y
Sbjct: 684 RDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSLPEQNTLHTMLLGTPGKLMSQFRLTYN 743
Query: 369 MVLNLL 374
M+LNLL
Sbjct: 744 MILNLL 749
>gi|195999190|ref|XP_002109463.1| hypothetical protein TRIADDRAFT_21387 [Trichoplax adhaerens]
gi|190587587|gb|EDV27629.1| hypothetical protein TRIADDRAFT_21387, partial [Trichoplax
adhaerens]
Length = 937
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 190/369 (51%), Gaps = 47/369 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V +I LSATV+N+DELA W+G+ K
Sbjct: 136 DIEWVIFDEVHYINDDERGVVWEEVVILLPDHVGLILLSATVSNSDELADWVGRTKRKQI 195
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEV 130
+I++++RPVPL + T L+ + D K M + SL +
Sbjct: 196 HVISTTKRPVPLEHFLYRSPNQKTDKDLIKIFDIYYKLMGVIFRYQSNSLREAFKRPTST 255
Query: 131 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 190
KP GG + + K A Q+ ++ I + + P
Sbjct: 256 KPTPKGG---KPTTKEA--------------QIYQSLIKNLIKKDPP------------- 285
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL 249
M+PA+ F+F+R+ CD L NL + E S+++ +K+ IL + P + L
Sbjct: 286 MVPAVVFVFSRKKCDNLAGSLSTANLTTKDEKSKIKRFIKKSISILSDKDQKLPQVVWLC 345
Query: 250 K----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+ GVA HH+G LP+ K +E ++Q GLVK +FATET A G+NMPA+ + ++SK
Sbjct: 346 EMLQLGVAVHHSGILPVLKEIVEMVYQEGLVKCLFATETFAMGVNMPAKCVIFDTISKHD 405
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ R +L E QMAGRAGRRG D G V+++ + +++ + L S+F
Sbjct: 406 GNSRRRLHPGEYIQMAGRAGRRGKDKTGTVIMLLKEEINEIDLRQMITGKPQKLQSKFRL 465
Query: 366 SYGMVLNLL 374
+YGM L +L
Sbjct: 466 TYGMALKVL 474
>gi|383859905|ref|XP_003705432.1| PREDICTED: helicase SKI2W [Megachile rotundata]
Length = 1223
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 180/375 (48%), Gaps = 56/375 (14%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N+ A W+G K
Sbjct: 388 LRDLEFVIFDEVHYINNDERGHVWEESVILLPETVTIVMLSATVPNSIIFADWVGHTKKK 447
Query: 81 TELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK-DGGS 138
+ S+ +RPVPL Y T T GK N K L E + DG
Sbjct: 448 KMYVISTLKRPVPLQHYLYTGT--------DGKTQNDKF------LVVDERGLFLLDGWY 493
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLP 193
R N++ N+N + + P+ LW HL+S ++LP
Sbjct: 494 RAVNAKDAKSQNTNKDIKK-----------KRLPPQMTPKQEQVLWSAFINHLKSNNLLP 542
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG------ 247
+ F+ +R+ CD + L + L E E + R + + +R +KG
Sbjct: 543 VVVFMLSRKRCDMSAVILRNVELTTETEKHAI-------RTFFQNNIRH--LKGSDRELP 593
Query: 248 --------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART V
Sbjct: 594 QVLMMQELLQNGIGIHHSGILPILKEIVEMLFQNGVVKLLFATETFAMGVNMPARTVVFD 653
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEP 358
S+ K + L E QMAGRAGRRG D G V+++ +T E ++ +
Sbjct: 654 SIKKYDGTNFRILHPTEYIQMAGRAGRRGHDTAGMVIIMCRTAVPHFNELKTMMCGQAQN 713
Query: 359 LVSQFTASYGMVLNL 373
L S+F +Y MVLNL
Sbjct: 714 LESKFKVTYSMVLNL 728
>gi|154415228|ref|XP_001580639.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121914859|gb|EAY19653.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 1069
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 204/424 (48%), Gaps = 46/424 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L DVDV++ DE HY+SD RG VWEE II P + ++ LSAT+ N E+A WIG+ +
Sbjct: 310 LRDVDVVIFDECHYISDEERGVVWEESIILMPPHINMVFLSATIPNDTEIAAWIGRTKNR 369
Query: 81 TELIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
T + + RPVPL L +L + GK + S + +L + K G R
Sbjct: 370 TVYVERHTERPVPLVHCLYAANDL-AVLKQPGKTFD---SQKFKRLENKFKEKQKKGPKR 425
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ Q + K +NA D+LP + F F
Sbjct: 426 EL------------FTPQYWQKAIDK-FVNA-------------------DLLPVLMFSF 453
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKG----LLKGVAA 254
+++ C+ ++ + L+D+ + + VE + L P+ P I+ L+ G+
Sbjct: 454 SQKNCEKFAEFAKQKCLIDDKQKAHVERFFTQSISRLKPNDRCLPQIEQVRSLLVNGIGL 513
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K +E L G VKV+F T T A GIN+PAR+ +SL K + LT
Sbjct: 514 HHGGMLPILKECVEILLADGYVKVLFCTSTFAMGINVPARSCAFTSLEKFNGQEFVNLTP 573
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNL 373
E QM+GRAGRRG+D++GH +L+ T E + +F G VE L SQF + M+LNL
Sbjct: 574 TEYVQMSGRAGRRGLDSQGHAILMVTKEFPEEAFIQKMFDGKVEKLNSQFYIRFNMILNL 633
Query: 374 L--AGAKVMHLSNESDDMKALQAG-RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
+ G ++ L S +Q+ +EA VE+ NY ++ L AK E ++
Sbjct: 634 IRTQGMEMTDLMKRSLSSNTVQSAIPKKKEALAKVEEEIKNYKRADCALNAKLEPNFLEF 693
Query: 431 ETDV 434
TD+
Sbjct: 694 NTDI 697
>gi|315041214|ref|XP_003169984.1| hypothetical protein MGYG_08161 [Arthroderma gypseum CBS 118893]
gi|311345946|gb|EFR05149.1| hypothetical protein MGYG_08161 [Arthroderma gypseum CBS 118893]
Length = 1292
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 196/387 (50%), Gaps = 35/387 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPY 133
+I++ +RPVPL Y + ++D EKG K + LS + ++ +
Sbjct: 490 YVISTPKRPVPLEHYLWAGKEIHKIVDAEKRFIEKGWKDTDDILSGRDKIKAQKAAEAQA 549
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSF-------GQHQLSKNSINAIRRS----------QV 176
GG + R S T G+ Q S I I R+ Q
Sbjct: 550 ARGGKQPERGRGQGQRGSGQRGTGQRGGAQQRGRGQPSARGIGNIARTGRGGGRTSAAQD 609
Query: 177 PQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSEV-ELALKR 231
V + + +LR+R+MLPA F+F+++ C L + C D+ + V E +L R
Sbjct: 610 RNVWVHLVQYLRNREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTR 669
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
R+ D + ++ LL +GV HH G LPI K +E LF +GLVK++FATET A G+N
Sbjct: 670 LRVEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLN 729
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 730 LPTRTVVFSGYRKHDGRAFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPIAA 789
Query: 350 --KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 790 LRKMILGDPTKLRSQFRLTYNMMLNLL 816
>gi|409083626|gb|EKM83983.1| hypothetical protein AGABI1DRAFT_96933 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1103
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 317 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 376
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG---- 137
+I++ +RPVPL Y ++D K ++ S L + K + G
Sbjct: 377 YVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGYSDARDALRRKQDKEREAAGLAPV 436
Query: 138 -SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRDMLPA 194
+ R +N+ ++ R + + L HL+ ++LP
Sbjct: 437 QATRGRGASARGGGANSRGSTLATRGRGGRGGGPARTIHADKNVYVHLLGHLKKENLLPV 496
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI---KGLL- 249
+ F F+++ C+ + L + +L E SEV +A+ K L + P I + LL
Sbjct: 497 VIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEKALSRLKGSDKKLPQIARMRDLLS 556
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA+ V S++ K
Sbjct: 557 RGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSNIRKHDGRNF 616
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ E QMAGRAGRRG+D G V +LV +L L+SQF +Y
Sbjct: 617 RDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSIPEQNTLHTMLLGTPGKLMSQFRLTYN 676
Query: 369 MVLNLL 374
M+LNLL
Sbjct: 677 MILNLL 682
>gi|156100705|ref|XP_001616046.1| ATP dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148804920|gb|EDL46319.1| ATP dependent RNA helicase, putative [Plasmodium vivax]
Length = 1387
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 181/361 (50%), Gaps = 34/361 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 369 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 428
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 429 HIVYTDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIK-------- 475
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
MN ++ GQHQ N + + + + SR+ P I F F
Sbjct: 476 -------EKMN----LSEDGQHQNGNNKHQRRGKKNIHDIEKIVQMCHSRNYTPLIIFAF 524
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAA 254
+++ C+ + +L D+ E + EL +IL D P ++ LL+G+
Sbjct: 525 SKKECEINATSMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGI 584
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL+K + +TS
Sbjct: 585 HHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGVEKRLITS 644
Query: 315 NELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E QMAGRAGRRG+D+RG V +++ TP E KL LVSQF Y M+LNL
Sbjct: 645 GEYIQMAGRAGRRGLDDRGIVIIMLDTPLH-WREAEKLFVGEANRLVSQFHLGYNMILNL 703
Query: 374 L 374
L
Sbjct: 704 L 704
>gi|115395946|ref|XP_001213612.1| hypothetical protein ATEG_04434 [Aspergillus terreus NIH2624]
gi|114193181|gb|EAU34881.1| hypothetical protein ATEG_04434 [Aspergillus terreus NIH2624]
Length = 1298
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 186/395 (47%), Gaps = 43/395 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 428 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDI 487
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR--KLSLNYLQ--------------- 124
+I++++RPVPL Y ++D + + K + N +
Sbjct: 488 YVISTAKRPVPLEHYLWAGKDKFKIVDSNKRFLENGWKEADNVISGRDKIKAQKAAEAQA 547
Query: 125 ------LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
+ G + R A NS G+ Q S I R+
Sbjct: 548 QSQAQRGGPQGRGRGQAAGRGQAPGRGGARGNSQRGGAPRGRGQPSNRGTGNIARTGRGG 607
Query: 179 VI------DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
T+W HLR ++LP F+F+++ C+ L + + + E S + +
Sbjct: 608 GRTTAAQDKTIWVQLVQHLRKENLLPGCIFVFSKKRCEENADSLSNQDFCNASEKSLIHM 667
Query: 228 AL-KRFRILYPDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+ K L P+ P I+ L +G+A HH G LPI K +E LF + LVKV+FAT
Sbjct: 668 FIEKSLTRLKPEDRDLPQIRRLRDLLSRGIAVHHGGLLPIMKEIVEILFAKSLVKVLFAT 727
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ET A G+N+P RT V S K G L E QMAGRAGRRG+D G+V++V
Sbjct: 728 ETFAMGLNLPTRTVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDTVGYVIIVSVGK 787
Query: 343 EGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 374
+ A +++ L SQF +Y M+LNLL
Sbjct: 788 DEAPPAAALRRMILGDPTKLRSQFRLTYNMILNLL 822
>gi|83282250|ref|XP_729688.1| Homo sapiens KIAA0052 protein [Plasmodium yoelii yoelii 17XNL]
gi|23488188|gb|EAA21253.1| Homo sapiens KIAA0052 protein-related [Plasmodium yoelii yoelii]
Length = 1309
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 177/355 (49%), Gaps = 31/355 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I + ++
Sbjct: 322 VIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKNQACHIVY 381
Query: 86 SSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 144
+ RP PL Y + T + + L+ ++ K+ + N+++ V KD N++
Sbjct: 382 TDYRPTPLQHYIYPTSSESVFLICDENKNFKKD---NFIK----AVNALKDRSMLDENNQ 434
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204
+ N N R + + SR+ P I F F+++ C
Sbjct: 435 SGGN-----------------NKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFSKKEC 477
Query: 205 DAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAGC 259
+ L NL D+ E + EL +IL D P ++ LL+G+ HH G
Sbjct: 478 EVNATTLHKVNLTDDSEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGL 537
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS E Q
Sbjct: 538 LPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGLEKRLITSGEYIQ 597
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
MAGRAGRRG+D+RG V+++ ++ KL LVSQF Y M+LNLL
Sbjct: 598 MAGRAGRRGLDDRGIVIIMLDSPLHWKDAEKLFVGEANRLVSQFHLGYNMILNLL 652
>gi|84996619|ref|XP_953031.1| DEAD-family helicase [Theileria annulata strain Ankara]
gi|65304027|emb|CAI76406.1| DEAD-family helicase, putative [Theileria annulata]
Length = 1069
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 190/360 (52%), Gaps = 48/360 (13%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
+ V++ DE+HY++D+SRG VWEE+II P+ +Q++ LSATV N E A WIG + K L
Sbjct: 291 ISVVIFDEIHYINDLSRGVVWEEVIILLPRNIQLVMLSATVPNYLEFAEWIGNVMQKEVL 350
Query: 84 IT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
I ++ RPVPL Y + KG + K + + + YK + + N
Sbjct: 351 IIMTNHRPVPLKHYLYIYDRFFLIHGAKGFN---KEAYHIM---------YKYTSTLKIN 398
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+K ++F + QV ++ L L S D +P + F F+R+
Sbjct: 399 DKK----------STF--------------KGQVQKLQRLLKQLESEDKMPVVLFCFSRQ 434
Query: 203 GCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
C+ + + + NL+ ++ + S++ L LK ++ R P ++ ++ +G+ HH
Sbjct: 435 KCEQYAKDMPNLNLVYNKVQASKIHLFLKESLDGLSESDRNLPQLRKMVNLLTRGIGVHH 494
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K +E LF RGL+KV+FATET A G+NMPAR+ V +S+ K LTS+E
Sbjct: 495 SGLLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGINYRYLTSSE 554
Query: 317 LFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QMAGRAGRRG+D G+V + + P ++ ++ L S+F +Y M+L +
Sbjct: 555 YTQMAGRAGRRGLDTFGNVYIFCCDEPP--DVQDLTNMMIERSTRLESRFRITYNMLLQI 612
>gi|294654755|ref|XP_456821.2| DEHA2A11242p [Debaryomyces hansenii CBS767]
gi|199429124|emb|CAG84796.2| DEHA2A11242p [Debaryomyces hansenii CBS767]
Length = 1243
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 189/376 (50%), Gaps = 35/376 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 403 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTYEFANWVGRTKQKDI 462
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + K L +D NRK S + + K + G+++
Sbjct: 463 YVISTPKRPVPLEIFIWAKDHLFKAID-----ANRKFS----DIEFKKHKEILEKGNKKE 513
Query: 142 NSRKHADMNSNNI----------------VTSFGQHQLSKNSINAIRRSQVPQV-IDTLW 184
H M + + V + G+ S R + +
Sbjct: 514 PP--HVTMGAGSRGGRGGTARGGNRGGGQVANRGRGNFSGGRGGLTRDGPNKNTWVSLVQ 571
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-P 243
+++ ++LPA+ F+F+++ C+ L + + + E SEV + + R RE P
Sbjct: 572 YMKQHNLLPAVIFVFSKKKCEEFADTLSNVDFCNAREKSEVHMFIDRAVSRLKKEDRELP 631
Query: 244 AI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
I + LL +G+A HH G LPI K IE LF R LVKV+FATET A G+N+P RT V +
Sbjct: 632 QIIKIRDLLSRGIAVHHGGLLPIVKECIEILFARSLVKVLFATETFAMGLNLPTRTVVFN 691
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP- 358
+ K G L E QM+GRAGRRG+D+ G V+++ + K + G
Sbjct: 692 TYRKHDGRGFRNLLPGEFTQMSGRAGRRGLDDTGTVIVMSFNEPLSPTDFKDVTLGTPTK 751
Query: 359 LVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 752 LSSQFRLTYNMILNLL 767
>gi|269218493|ref|ZP_06162347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211604|gb|EEZ77944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 866
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 183/360 (50%), Gaps = 49/360 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV +VLDEVHYL+D RG VWEE+I+ P+ ++I LSATV N ELAGW+ + GKTE
Sbjct: 129 DVGYVVLDEVHYLADRERGPVWEEVILTLPEHCRLIGLSATVPNTGELAGWLRSVRGKTE 188
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
L+ S+ RP +PL E + RK+ + KDGG
Sbjct: 189 LVHSTVRP-------------VPLRQEVA--VGRKVFRLF----------GKDGGP---- 219
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+V++ ++K + R + L RDMLPAI FIF+R+
Sbjct: 220 --------LGALVSA-----IAKLPPDGRGRISDRDRRRIIDLLAERDMLPAIEFIFSRK 266
Query: 203 GCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAH 255
GCD AV+ L D L E +E + R ++ R + A + L++G AH
Sbjct: 267 GCDKAVEALLQRDIALTGRKERAEAAARIAEVRATLSESDRRAVGFDAAARALVRGYGAH 326
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG P K E+L + GL+++V+AT TLA GI+MP RT V+ SL + G I L++
Sbjct: 327 HAGVYPAIKELTEKLMEDGLLRIVYATGTLALGIDMPVRTVVVESLQRWDGEGFIDLSAT 386
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E Q+ GRAGRRG D GH V++ P L VE L+S F SY V+NLLA
Sbjct: 387 EYTQLIGRAGRRGKDAVGHAVVLAGPDLDPYILADLGSGRVEALLSAFVPSYNTVVNLLA 446
>gi|354546203|emb|CCE42932.1| hypothetical protein CPAR2_205750 [Candida parapsilosis]
Length = 1251
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 192/388 (49%), Gaps = 43/388 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 395 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 454
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR--KLSLNYLQLSTSEVK-PYKDGGS 138
+I++ +RPVPL + S K L ++D + + K N L+ S+ + P GS
Sbjct: 455 YVISTPKRPVPLEIFISAKNKLFKVVDSSRRFLENEFKAHKNLLEAGNSKKELPSTTMGS 514
Query: 139 RRRNSRKHADMNSNNIVT---------------------SFGQHQLSKN-SINAIRRSQV 176
R N VT ++G K + ++
Sbjct: 515 GSRGGPGGTARGGNRAVTRGRGGARGGGRGGGGRGGAANNYGNFSGPKRFGTDGPNKNTW 574
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 236
P+++ +++S ++LPA+ F+F+++ C+ L + E SE+ + + R
Sbjct: 575 PELVH---YMKSNNLLPAVIFVFSKKKCEMYADSLHGVDFCTAKEKSEIHMFIDRAVGRL 631
Query: 237 PDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
RE P I + L +G+A HH G LPI K IE LF + LVKV+FATET A G+N+
Sbjct: 632 KKEDRELPQIIKIREMLSRGIAVHHGGLLPIVKECIEILFAKTLVKVLFATETFAMGLNL 691
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAE 346
P RT V SS K G L E QM+GRAGRRG+D G V+++ +P + E
Sbjct: 692 PTRTVVFSSTRKHDGRGFRNLLPGEFTQMSGRAGRRGLDATGTVIVMAYNEALSPTDFKE 751
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ L SQF +Y M+LNLL
Sbjct: 752 ----VALGTPTKLQSQFRLTYNMILNLL 775
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG---------IKVRLWKN 808
G A I EL L ++ + L D +PA++ A+ + V EG I RL +
Sbjct: 1079 GRVACEINSGWELILTELILDNFLGDFEPAEIVALLSCFVYEGRTQEEEPPLITPRLERG 1138
Query: 809 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS--GMVEAWASGLTWR 866
+ I+E + ++ V E R S L +E+ VE +F+ +V WA+GL++
Sbjct: 1139 KARIHEIAD---KLLRVYIEKRVS-LTSEEEEFVE-----SKRFALVNVVYEWANGLSFN 1189
Query: 867 EMMMDCALDDGDLARLLRRTIDLLAQI 893
E+M +G + R++ R ++ ++
Sbjct: 1190 EIMGISVESEGTIVRVITRLDEICREV 1216
>gi|312385895|gb|EFR30287.1| hypothetical protein AND_00228 [Anopheles darlingi]
Length = 1749
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 182/372 (48%), Gaps = 48/372 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV N E A W+G+ K
Sbjct: 856 DLEYVIFDEVHYITDSERGHVWEEVLILLPDHVCIVMLSATVPNTLEFANWVGKTKKKRV 915
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
++++++RPVPL Y T K+ +++E + + K
Sbjct: 916 YVVSTAKRPVPLEHYLYTGFGGKSKSDCFLIVNEHSAFTQEGYRKAKECMEVKQAKASGG 975
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRD 190
GG RN ++ + Q Q TLW HL+S+D
Sbjct: 976 GGPVMRNQKRTG---------PYSQKQEQ-----------------TLWVGLIHHLKSQD 1009
Query: 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR--FRILYPDAVREPAIKG- 247
LP + F +R CD+ L C+L E + ++ R++ PD P ++
Sbjct: 1010 KLPVVAFTLSRNRCDSNADALLSCDLTTAREKYVINSFFQQCLHRLIPPDRAL-PQVRQM 1068
Query: 248 ---LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
L +G+ HH+G LPI K +E LF RGLVK++FATET A G+NMPART + S K
Sbjct: 1069 QSCLERGIGIHHSGILPILKEIVEMLFARGLVKILFATETFAMGVNMPARTVIFDSTRKF 1128
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--LVSQ 362
L +E QMAGRAGRRG+D G V+++ AE K + G +P L SQ
Sbjct: 1129 DGQCVRPLQPSEYTQMAGRAGRRGLDKTGTVIIICKNEVPAESELKTMIMG-KPVRLESQ 1187
Query: 363 FTASYGMVLNLL 374
F +Y M+L LL
Sbjct: 1188 FRLTYAMMLYLL 1199
>gi|302509728|ref|XP_003016824.1| hypothetical protein ARB_05117 [Arthroderma benhamiae CBS 112371]
gi|291180394|gb|EFE36179.1| hypothetical protein ARB_05117 [Arthroderma benhamiae CBS 112371]
Length = 1292
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 189/387 (48%), Gaps = 35/387 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR--KLSLNYLQLSTSEVKPYKDGGSR 139
+I++ +RPVPL Y + ++D + + + + K + + L
Sbjct: 490 YVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVKAQKAAEAQA 549
Query: 140 RRNSRKHADMNSNNIVTSF-------------GQHQLSKNSINAIR-------RSQVPQV 179
R+ + S G+ Q S I I R+ Q
Sbjct: 550 ARSGHQSERGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQD 609
Query: 180 IDTLWHL----RSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSE-VELALKR 231
+ HL R R+MLPA F+F+++ C L + C D+ + VE +L R
Sbjct: 610 RNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTR 669
Query: 232 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
RI D + ++ LL +GV HH G LPI K +E LF +GLVK++FATET A G+N
Sbjct: 670 LRIEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLN 729
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K G L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 730 LPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITT 789
Query: 350 --KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 790 LRKMILGDPTKLRSQFRLTYNMMLNLL 816
>gi|380302552|ref|ZP_09852245.1| superfamily II RNA helicase [Brachybacterium squillarum M-6-3]
Length = 954
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 206/398 (51%), Gaps = 33/398 (8%)
Query: 5 IVVFSCSV--GMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ + S L + + +V+DEVHYL+D RG VWEE+I++ VQ++ LS
Sbjct: 123 VVVMTTEVLRNMLYAGSPLLEGLGFVVMDEVHYLADRLRGPVWEEVILHLDDAVQLVSLS 182
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL-LDEKGKHM------ 114
ATV+NA+E W+ ++ G TE++ S RPVPL + +L L +DE G+ +
Sbjct: 183 ATVSNAEEFGAWLQEVRGDTEVVVSETRPVPLWQHVVVGGDMLDLFVDEDGEPVVSHGPG 242
Query: 115 -NRKLSLN-YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV--TSFGQHQLSKNSINA 170
K ++N ++ S P +D G R + G+H+ +N
Sbjct: 243 ARGKPAVNPEIERLASHTPPVEDRGGRGGRGGHGGRGGRGGRGRGNTQGRHR-PRNPGRD 301
Query: 171 IRRSQVPQVI---DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL--LDECEMSEV 225
R +P+ + + L + +LPAI FIF+R GC+AAV+ + L D+ E +
Sbjct: 302 GGRGGMPRPARRSEVIALLDAAALLPAIIFIFSRAGCEAAVRQVTQSRLRLTDDEERRRI 361
Query: 226 E---------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 276
+ ++ ++L +A R A L GVAAHHAG LP+ K+ +EELF GL+
Sbjct: 362 RAVLDERLAAIGVEDEQVLGIEAFRRAA----LDGVAAHHAGMLPLLKTVVEELFAAGLI 417
Query: 277 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336
KVVFATETLA GINMPAR+ VL L K LT E Q+ GRAGRRGID GH V
Sbjct: 418 KVVFATETLALGINMPARSVVLEKLVKFNGVEHAALTPGEYTQLTGRAGRRGIDTEGHAV 477
Query: 337 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
++ L PL S F + M +NLL
Sbjct: 478 VIAGQGFDPAAVGSLASRRTYPLRSAFRPTANMAVNLL 515
>gi|358339260|dbj|GAA47356.1| helicase SKI2W, partial [Clonorchis sinensis]
Length = 1142
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 197/384 (51%), Gaps = 70/384 (18%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ ++ + D++V+++DEVHYL+D RG VWE+I+I PK V ++ LSATV N E A W
Sbjct: 93 LCNAADAIRDLEVVIMDEVHYLNDAERGHVWEQIMIMLPKHVLLVMLSATVPNTMEFADW 152
Query: 74 IGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+G+I G + ++ ++RRPVPL Y T LD G+ ++L L
Sbjct: 153 LGRIRGSEIHVVATNRRPVPLEHYLFTG------LD--GQTPEKQLHLVV---------- 194
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-----LR 187
KH+ N G H+ + I +W L+
Sbjct: 195 -----------DKHSQFNLP-APGGLGVHE---------------KRIKNMWLGVVRLLQ 227
Query: 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK---RFRILYPDAVREPA 244
R+++PAI F F+R + + L +LL + E +EV+ L+ + R+ PD R P+
Sbjct: 228 ERELMPAIAFGFSRNSLETLAENLSSVDLLSKDEKNEVQQFLRYSIKNRLKGPDK-RLPS 286
Query: 245 IKGL----LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
+ + +G+A HHAG LP+ K +E LFQRGL++++FATET A G+NMPAR + S+
Sbjct: 287 VLFITDLACRGLAVHHAGMLPLLKETVEMLFQRGLIRLLFATETFAMGVNMPARCVLFST 346
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL--------VQTPYEG--AEECCK 350
L K R L E QMAGRAGRRG+D G V++ V +P G AE
Sbjct: 347 LEKYDGRRRRPLNPGEYTQMAGRAGRRGLDASGTVIIMVEGVGASVASPKLGVPAEATLT 406
Query: 351 LLFAGVEP-LVSQFTASYGMVLNL 373
+ G LVSQF +Y M+L+L
Sbjct: 407 SMILGTPTQLVSQFKITYSMILHL 430
>gi|328700737|ref|XP_001948018.2| PREDICTED: helicase SKI2W-like [Acyrthosiphon pisum]
Length = 1181
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 199/389 (51%), Gaps = 46/389 (11%)
Query: 2 QLRIVVFSCSVGMVSSESG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60
Q IV M+ S+S + + + ++LDEVHY++D RG +WE+I+I PK V+++ L
Sbjct: 328 QCLIVTTEILCSMLYSDSDKIKETEFVILDEVHYVNDRDRGHIWEQILIMLPKRVKLVML 387
Query: 61 SATVANADELAGWIGQIH-GKTELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKL 118
SATV N + A WIG+ K ++ + RPVPL Y + + + D H+ RK
Sbjct: 388 SATVTNVIDFANWIGRTRDSKIYVVFTLYRPVPLEHYLYIGSNTSMEMKD--NMHLIRK- 444
Query: 119 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
D G + RK AD+ N ++Q SKN + Q P+
Sbjct: 445 ---------------ADSGFLIQGYRKAADLLKKN--KEVKKYQESKNF-----KDQKPK 482
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLL---DECEMSEVEL--ALKRF 232
++ L L ++ P + FI +R+ CD + L++ N L E + +E A+K+
Sbjct: 483 WVNFLRFLDKNNLFPVVVFILSRKKCDMMAESLKNSVNFLLNNKESQANEYFFNDAIKKL 542
Query: 233 RILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
+ P+ P + + L +G+A HH+G LPI K +E FQ+ LVK +FATET A G
Sbjct: 543 K---PEDRALPQVVLMKELLCQGIAVHHSGILPILKEIVEMQFQKSLVKCLFATETFAIG 599
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGA 345
INMPART V +++K + L E QMAGRAGRRG D+ G V+++ Q P +
Sbjct: 600 INMPARTVVFEAINKFDGIEKRNLAPAEYTQMAGRAGRRGHDDSGTVIIMANDQLPND-- 657
Query: 346 EECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E ++ L SQF SY ++LN+
Sbjct: 658 RELTNMMLGKSAKLESQFKVSYSIILNMF 686
>gi|401404381|ref|XP_003881710.1| putative DEAD/DEAH box helicase domain-containing protein [Neospora
caninum Liverpool]
gi|325116123|emb|CBZ51677.1| putative DEAD/DEAH box helicase domain-containing protein [Neospora
caninum Liverpool]
Length = 1366
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 174/329 (52%), Gaps = 17/329 (5%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
VD ++ DE HY++DI RG VWEE II PKEV +I LSAT+ N + A WIG + +
Sbjct: 580 VDSVIFDEAHYINDIERGVVWEEAIILLPKEVNMILLSATLPNYRQFADWIGAVKQREVF 639
Query: 84 -ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL-----STSEVKPYKDGG 137
+++ RRP PL + L+D KG+ + + + + KP +
Sbjct: 640 TLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVRDKGNPPAARKPPLNNA 699
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDMLPA 194
+R + ++ G HQ SK + A ++++ ++ + L + LP
Sbjct: 700 PQRGRGGARGGARATSVQD--GAHQSSKGVYQTAEAKLKTEIHRLQGMIAKLEKDNELPV 757
Query: 195 IWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLL--- 249
+ F F+RR C+ Q + N+ L + S++ L +K + A RE P I+ +
Sbjct: 758 VVFCFSRRKCETYAQAMRKLNVVLSHNDRSKIHLFVKDCLMALSPADRELPQIRFVCSLV 817
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 818 QRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDGQR 877
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
L ++E QMAGRAGRRGID GHV +
Sbjct: 878 SRMLLASEYTQMAGRAGRRGIDTFGHVYI 906
Score = 39.3 bits (90), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 24/212 (11%)
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRIS-------NVIHETRALDINTQVIFPLGETAAA 763
+L +R + L I +I +E L + V+ + + +D ++ + G A
Sbjct: 1142 QLTSRKRELMDEIAEISSQLHEESLDLYPEMQARLTVLKKLKLIDEDSGTLTVKGRVACQ 1201
Query: 764 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 823
+ +EL L + L +L+P ++AAV ++ V+ V + P+ +
Sbjct: 1202 VMSGDELTLTEFIFQGGLENLEPEEIAAVLSAFVAPDGPVE------QVPAPTAGIQRAR 1255
Query: 824 NVLDEHRSSFLELQEKHGVEIPC-----CLDSQFSGMVEAWASGLTWREMMMDCALDDGD 878
+ +E + L+LQ GV + + S + WA+G+++ ++M +G
Sbjct: 1256 DQAEEIHVAILKLQANSGVRVNAEDWWKLCNFSLSLVAYDWANGVSFGDIMQKTNAQEGS 1315
Query: 879 LARLLRRTIDLLAQIPKL------PDVDQRLQ 904
+ R + R +LL +I + PD+ +LQ
Sbjct: 1316 IVRAILRLDELLRKIRQAAVLIGDPDLGAKLQ 1347
>gi|389751297|gb|EIM92370.1| antiviral helicase [Stereum hirsutum FP-91666 SS1]
Length = 1240
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 190/399 (47%), Gaps = 67/399 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV NA E A W+G+ K
Sbjct: 390 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNAKEFADWVGRTKKKDI 449
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL--NYLQLSTSEVKPYKDGGS- 138
+I +++RPVPL Y G+ M++ + N+L L YK+ G
Sbjct: 450 YVIYTAKRPVPLEHYLWA-----------GREMHKIVDADRNFLGLG------YKEAGEA 492
Query: 139 -RRRNS--RKHADMNSNNIVTSFGQHQLS------------------------------- 164
RR+ R+ A M V + G
Sbjct: 493 LRRKQDKEREAAGMPPVQRVGARGAAPQRGGGQRGGGRGAPTGRGGPARGGPREGGGGGG 552
Query: 165 ---KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 221
+ NA+ +S + L HLR + +LP + F +++ C+ L + +L E
Sbjct: 553 GGFTRTFNAVDKSLY---VHLLGHLRKKSLLPVVVFTLSKKRCEENAGTLSNVDLSTAVE 609
Query: 222 MSEVELALKRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLV 276
SEV +A+++ + R+ P I + LL +G+ HH G LPI K +E LF RGLV
Sbjct: 610 RSEVHVAIEKAVSRLKGSDRKLPQIGRMRDLLSRGIGVHHGGLLPIVKEVVEILFARGLV 669
Query: 277 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336
KV+FATET A G+NMPA+ V S + K + E QMAGRAGRRG+D G V+
Sbjct: 670 KVLFATETFAMGVNMPAKCVVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVI 729
Query: 337 LVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 374
+V + + G L SQF +Y M+LNLL
Sbjct: 730 IVTNDNLPEQTTLNTMILGTPGKLNSQFRLTYNMILNLL 768
>gi|296813017|ref|XP_002846846.1| antiviral helicase SKI2 [Arthroderma otae CBS 113480]
gi|238842102|gb|EEQ31764.1| antiviral helicase SKI2 [Arthroderma otae CBS 113480]
Length = 1288
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 192/385 (49%), Gaps = 34/385 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 429 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDI 488
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR--KLSLNYLQLSTSEVKPYK----D 135
+I++ +RPVPL Y + ++D + + + K + + L +VK K
Sbjct: 489 YVISTPKRPVPLEHYLWAGKEIHKVVDADKRFIEKGWKDADDILS-GRDKVKAQKAAEAQ 547
Query: 136 GGSRRRNSRKHADMNSNNIVTSF-------GQHQLSKNSINAIRRS----------QVPQ 178
GG + R T G+ Q S I R+ Q
Sbjct: 548 GGKQPERGRGQNQRGGGQRGTGQRGGPQQRGRGQPSTRGTGNIARTGRGGGRTSAAQDRN 607
Query: 179 V-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKRFR 233
V + + +LR R+MLPA F+F+++ C L + + + S VE +L R R
Sbjct: 608 VWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTASDKSAIHMIVEKSLTRLR 667
Query: 234 ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
D + ++ LL +GV HH G LPI K +E LF +GLVK++FATET A G+N+P
Sbjct: 668 AEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLNLP 727
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC--- 349
RT V S K G L + E QMAGRAGRRG+D G V++V + + A
Sbjct: 728 TRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITTLR 787
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLL 374
K++ L SQF +Y M+LNLL
Sbjct: 788 KMILGDPTKLRSQFRLTYNMMLNLL 812
>gi|359772313|ref|ZP_09275745.1| putative helicase, partial [Gordonia effusa NBRC 100432]
gi|359310546|dbj|GAB18523.1| putative helicase, partial [Gordonia effusa NBRC 100432]
Length = 432
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 168/321 (52%), Gaps = 21/321 (6%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+L+D RG VWEE+I++ V ++ LSATV+NA+E W+ + G T +I
Sbjct: 126 VVMDEVHFLADRFRGAVWEEVILHLDPSVSVVALSATVSNAEEFGDWMQTVRGDTTVIVD 185
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + T L L D + K + ++ ++ K R
Sbjct: 186 DHRPVPLQQHMMVGTRLFDLFDPREKRSGKGGKAKNPGVNPELIRFIK--------HRAL 237
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
+ + G+ + + + R + + +D +LPAI FIF+R GCD
Sbjct: 238 MADDYDERSRGRGRGRPNNRRGTVVPRPNLVRQLD------REGLLPAIGFIFSRAGCDG 291
Query: 207 AVQYL--EDCNLLDECEMSEVELALKRFRI-LYPDAVREPAI----KGLLKGVAAHHAGC 259
A+ NLLD + ++V+ + R+ L P + + GL +G AAHHAG
Sbjct: 292 ALHQCLRSGINLLDGQQSAQVDDVVDRYVAELSPADIDILGVAEWRTGLRRGFAAHHAGL 351
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP ++ +EELF GLV++VFATETLA GINMPAR+ VL L K + LT E Q
Sbjct: 352 LPTFRHCVEELFTLGLVRMVFATETLALGINMPARSVVLERLVKYNGEAHVDLTPGEFTQ 411
Query: 320 MAGRAGRRGIDNRGHVVLVQT 340
+ GRAGRRGID GH V++ T
Sbjct: 412 LTGRAGRRGIDVEGHAVVLWT 432
>gi|68531943|ref|XP_723656.1| antiviral protein ski2 [Plasmodium yoelii yoelii 17XNL]
gi|23478020|gb|EAA15221.1| antiviral protein ski2 [Plasmodium yoelii yoelii]
Length = 1358
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 200/398 (50%), Gaps = 43/398 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
++ ++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K
Sbjct: 410 NIHCVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEV 469
Query: 83 L-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK------- 134
+ I++ +RPVPL Y +L ++DEK K + Y+++ E K
Sbjct: 470 IAISTKKRPVPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEEAGKKGKELMGS 529
Query: 135 -DGGSRR------RNSR--------KHADMNS-----NNIVTSFGQH-------QLSKNS 167
GG ++ +N++ K N+ N+ V + Q+ ++ +N
Sbjct: 530 SHGGKKKMYYSDPKNNKDNQMEKQNKTGTTNNLGDKQNDTVKGYYQYCKQKQKQRMFQNE 589
Query: 168 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
N ++++ ++ + L + LP + F F+R C+ + + N LD + S+V L
Sbjct: 590 ANM--KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHL 647
Query: 228 ALKRFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+K D RE IK L K G+ HH+G LPI K +E LF +GL+KV+FAT
Sbjct: 648 FIKESASKLCDQDRELNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFAT 707
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTP 341
ET A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D+ G+V +
Sbjct: 708 ETFAMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDSYGYVYIYCSDN 767
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ +++ L S+F +Y M+L LL ++
Sbjct: 768 IPDQVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQI 805
>gi|357617976|gb|EHJ71092.1| hypothetical protein KGM_14675 [Danaus plexippus]
Length = 1252
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 182/371 (49%), Gaps = 40/371 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE++I P V I+ LSATV N + A W+G+ K
Sbjct: 412 DLEFVIFDEVHYINNTERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRKV 471
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++++ +RPVPL Y T + GK N + L Q +++ Y +
Sbjct: 472 YVVSTPKRPVPLCHYLYTGSG--------GKSKNERF-LVVDQEGAFQLRGYNE------ 516
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIW 196
+ N SFG ++ P+ T+W HLRS D LP +
Sbjct: 517 -AAAAKKARENEYKKSFGP--------KGGKQFGNPKAEQTMWVAFIDHLRSCDKLPVVA 567
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAIK---GLLKG 251
F +R CD + L +L E S ++ R R+ PD I+ L G
Sbjct: 568 FTLSRNRCDQNAENLMSVDLTTAKEKSHIKSFFMRCLQRLKEPDRKLPQVIRLQRVLENG 627
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH+G LP+ K +E LFQ G VK++FATET A G+NMPART V ++K
Sbjct: 628 IGVHHSGILPLLKEIVEMLFQSGHVKILFATETFAMGVNMPARTVVFDDITKFDGIQSRS 687
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYG 368
L E QMAGRAGRRG+D+ G V+++ EG + L + + L SQF +Y
Sbjct: 688 LAPAEYIQMAGRAGRRGLDDTGTVIILCK--EGVPDQVTLKGMMLGTPQKLSSQFRLTYA 745
Query: 369 MVLNLLAGAKV 379
M+L+LL A V
Sbjct: 746 MILSLLRVATV 756
>gi|198433188|ref|XP_002130768.1| PREDICTED: similar to superkiller viralicidic activity 2-like
[Ciona intestinalis]
Length = 1235
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 189/362 (52%), Gaps = 34/362 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DEVHY++D RG VWEE++I P ++ LSATV N E A WIG+ K
Sbjct: 414 DLEWVIFDEVHYINDSERGVVWEEVLIMLPVHCNVVLLSATVPNTMEFANWIGRTKQKKI 473
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPLT Y T + N+ +L + ++ + + G ++
Sbjct: 474 YVISTQKRPVPLTHYLYTGNS------------NKTNDQMFLIVDSN--RKFDTAGYQKA 519
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ + N + Q + S I S +++ L L + LP + F F+R
Sbjct: 520 LTARTERSNKQQKTGAKVQRITNPASDKGIWLS----LLNRLCKL---NQLPVVAFTFSR 572
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKG----LLKGVAAHH 256
+ CD L +L E SE+ + + + + L P ++ L G+ HH
Sbjct: 573 KRCDENAALLSSLDLTSTQEKSEIHIFVNKCVKKLKGSDQNLPQVQQMSEQLQHGIGVHH 632
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K +E LF RGLVK++FATET A G+NMPART V SL K + L + E
Sbjct: 633 SGILPILKEVVEMLFARGLVKLLFATETFAMGVNMPARTVVFDSLRKHDGTKMRNLLAGE 692
Query: 317 LFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 372
QMAGRAGRRG+D+ G+V+++ Q P E AE +++ G L SQF +YGM+LN
Sbjct: 693 YIQMAGRAGRRGLDDVGNVIILCKGQVP-EMAE--LQIMMLGRPTKLESQFRLTYGMILN 749
Query: 373 LL 374
LL
Sbjct: 750 LL 751
>gi|221058304|ref|XP_002261660.1| ATP-dependant RNA helicase [Plasmodium knowlesi strain H]
gi|194247665|emb|CAQ41065.1| ATP-dependant RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 1332
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 179/357 (50%), Gaps = 34/357 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I + ++
Sbjct: 340 VIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVY 399
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 400 TDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIKE----------- 443
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPAIWFIFNRR 202
NN+ S HQ + NS + R + I+ + + SR+ P I F F+++
Sbjct: 444 -------KNNM--SEDTHQQNGNSRHNRRTKKNVHDIEKIVQMCHSRNYTPLIIFAFSKK 494
Query: 203 GCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHA 257
C+ + +L D+ E + EL +IL D P ++ LL+G+ HH
Sbjct: 495 ECEVNATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHG 554
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS E
Sbjct: 555 GLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLRKFDGVEKRLITSGEY 614
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D+RG V+++ E KL LVSQF Y M+LNLL
Sbjct: 615 IQMAGRAGRRGLDDRGIVIIMLDSPLHWREAEKLFVGEANRLVSQFHLGYNMILNLL 671
>gi|307201503|gb|EFN81266.1| Helicase SKI2W [Harpegnathos saltator]
Length = 1209
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 43/365 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG- 79
L D++ ++ DEVHY+++ RG VWEEI+I P+ + I+ LSATV N A W+G+I
Sbjct: 387 LRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQTINIVMLSATVPNPVVFADWVGRIKKR 446
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
K +I++ +RP+PL Y T T GK + K +L L DG +
Sbjct: 447 KMYVISTLKRPIPLLHYLYTGT--------DGKTKDDK----FLVL---------DGNGQ 485
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPA 194
N++N + SKN+ + R P+ + LW HL S DMLP
Sbjct: 486 FLLDGWFKATNASN--------KKSKNAKDC--RRMTPKQEEVLWRAFISHLNSNDMLPV 535
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLL 249
+ F +R+ CD L + +L E +V + + + RE P + + L
Sbjct: 536 VVFTLSRKRCDVNAATLRNLDLTTAREKHQVHVFFQNNIKNLKGSDRELPQVLMMQELLQ 595
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KGV HH+G LPI + +E LFQ G+VK++FATET A G+NMPART V S+ K +
Sbjct: 596 KGVGIHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKFDGNQF 655
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L E QMAGRAGRRG D G V V+ + + ++ G + L S+F +Y
Sbjct: 656 RTLFPTEYIQMAGRAGRRGHDTTGTVMVMCRNEVPHFNDLKPMMCGGAQTLESKFKVTYS 715
Query: 369 MVLNL 373
M+LNL
Sbjct: 716 MLLNL 720
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 711 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770
+L+++ ++L ++ + + +++ + ++ R +D + +V L A G NEL
Sbjct: 999 QLESKMRQLQLKLSDEGMTLYPDYMNMLTLLKHLRYIDSDERVA--LKGRVALQMGSNEL 1056
Query: 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV--INVINVLDE 828
+ ++ +L L+PA++AA+ ++L+ + + I EP T+ IN NV+ E
Sbjct: 1057 LITELILKNVLTVLQPAEIAALLSALI--------FHQRTDI-EPQLTLNLINGRNVMKE 1107
Query: 829 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 885
+ L++ H + L+ +V WA ++ E+M + +G + R +++
Sbjct: 1108 VHAELEALEQSHELSTLSPLNCGLMEVVYEWAQAKSFAEIMKKTDVQEGIIVRCIQQ 1164
>gi|70952427|ref|XP_745382.1| helicase [Plasmodium chabaudi chabaudi]
gi|56525688|emb|CAH74731.1| helicase with Zn-finger motif, putative [Plasmodium chabaudi
chabaudi]
Length = 889
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 196/398 (49%), Gaps = 43/398 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
++ ++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K
Sbjct: 400 NIHCVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEV 459
Query: 83 L-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST-------------- 127
+ I++ +RP+PL Y +L ++DEK K + Y+++
Sbjct: 460 IAISTKKRPIPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEEAGKKGKELSGS 519
Query: 128 ----------SEVKPYKDGGSRRRN---SRKHADMNSNNIVTSFGQH-------QLSKNS 167
S+ K KD ++N + + N+ V + Q+ ++ +N
Sbjct: 520 SHGGKKKIYYSDAKNNKDNQMEKQNKTGTTNNTGDKQNDTVKGYYQYCKQKQKQRMFQNE 579
Query: 168 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
N ++++ ++ + L + LP + F F+R C+ + + N LD + S+V L
Sbjct: 580 ANM--KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHL 637
Query: 228 ALKRFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+K D R+ IK L K G+ HH+G LPI K +E LF +GL+KV+FAT
Sbjct: 638 FIKESASKLCDQDRDLNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFAT 697
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTP 341
ET A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D G+V +
Sbjct: 698 ETFAMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDTHGYVYIYCSDN 757
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ +++ L S+F +Y M+L LL ++
Sbjct: 758 IPDQVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQI 795
>gi|429329445|gb|AFZ81204.1| DEAD/DEAH box helicase domain-containing protein [Babesia equi]
Length = 1116
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 180/366 (49%), Gaps = 47/366 (12%)
Query: 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 77
+S + + V++ DE+HY+SD+SRG VWEE+II PK +Q++ LSATV N E A WIG I
Sbjct: 319 DSVISQLGVVIFDEIHYISDLSRGVVWEEVIIMLPKTIQLVMLSATVPNYSEFADWIGNI 378
Query: 78 HGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K ++ ++ RP PL Y L++ KG
Sbjct: 379 MQKEVVIVVTNHRPTPLVHYLYIYNRFFLLVNPKG------------------------- 413
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHLRSRDMLPA 194
N + T + ++ K +IN + V ++ + L S LP
Sbjct: 414 ------------FNKDAYHTMYRYSKMIKTTINKKPTFKGHVQKLQKLVKILESEKKLPV 461
Query: 195 IWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK-- 250
+ F FNR C+ + + + NL E S++ L LK + + P ++ ++K
Sbjct: 462 VLFCFNRAKCEVYAKEMPNLNLAYTRAERSKIHLFLKESLSNISEGDKNIPQLRSIIKLL 521
Query: 251 --GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
G+ HH+G LPI K +E LF +GL+KV+FATET A G+NMPAR+ V +S+ K
Sbjct: 522 HRGIGIHHSGLLPIIKEIVEILFSKGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGQK 581
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
LT++E QMAGRAGRRG+D+ G V + ++ ++ L S+F +Y
Sbjct: 582 GRYLTASEYTQMAGRAGRRGLDSFGSVYIFCSDDPPDLQDLTAMMIEKSTRLESRFRITY 641
Query: 368 GMVLNL 373
M+L +
Sbjct: 642 NMLLQI 647
>gi|255950278|ref|XP_002565906.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592923|emb|CAP99292.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1265
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 184/372 (49%), Gaps = 33/372 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 428 DVEFVIFDEVHYVNDQERGVVWEEVIIMLPEHVTLILLSATVPNTREFASWVGRTKKKDI 487
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL Y L K KH + +L+ G + +
Sbjct: 488 YVISTHKRPVPLEHY---------LWAGKSKHKIVDSNKRFLETGWKAADDILSGRDKLK 538
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIR---RSQVPQVIDT----LWHLRSRDMLPA 194
++ + + +N R R+ Q +T + HLR D+LP
Sbjct: 539 AMKEAEAQAQSAQARAPAPQGRGRNIARTGRGGGRTSAAQDKNTWVHLVSHLRKEDLLPG 598
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMS----EVELALKRFRILYPDAVREPAI----K 246
F+F+++ C+ L + + E S +E AL R L P+ P I +
Sbjct: 599 CVFVFSKKRCEENADSLSSQDFSNSTEKSLTHMFIEKALTR---LKPEDRTLPQILRLRE 655
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L +G+A HH G LPI K +E LF + LVKV+FATET A G+N+P RT V S K
Sbjct: 656 LLSRGIAVHHGGLLPIVKEVVEILFAKSLVKVLFATETFAMGLNLPTRTVVFSGFRKHDG 715
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL--LFAGVEP--LVSQ 362
L E QMAGRAGRRG+DN G+V++ + + A L + G EP L SQ
Sbjct: 716 KAFRDLLPGEYTQMAGRAGRRGLDNVGYVIVTSSGRDEAPSAASLKQMILG-EPTKLRSQ 774
Query: 363 FTASYGMVLNLL 374
F +Y M+LNLL
Sbjct: 775 FRLTYHMILNLL 786
>gi|448527708|ref|XP_003869560.1| Ski2 protein [Candida orthopsilosis Co 90-125]
gi|380353913|emb|CCG23425.1| Ski2 protein [Candida orthopsilosis]
Length = 1243
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 191/381 (50%), Gaps = 36/381 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 394 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 453
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL---STSEVKPYKDGGS 138
+I++ +RPVPL + STK L ++D + + + + L ++++ P GS
Sbjct: 454 YVISTPKRPVPLEIFISTKNKLFKVVDSNRRFLESEFKAHKSLLEAGNSNKQLPSTTMGS 513
Query: 139 RRRNSRKHADMNSNNIVT--------------SFGQHQLSKN-SINAIRRSQVPQVIDTL 183
R N VT + G K + ++ P+++
Sbjct: 514 GSRGGPGGTARGGNRGVTRGRGSGRGGRGGSSNHGNFSGPKRFGTDGPNKNTWPELV--- 570
Query: 184 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE- 242
+++S ++LPA+ F+F+++ C+ L + E SE+ + + R RE
Sbjct: 571 HYMKSNNLLPAVIFVFSKKKCETYADSLHGVDFCTAKEKSEIHMFIDRAVGRLKKEDREL 630
Query: 243 PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
P I + L +G+A HH G LPI K IE LF + LVKV+FATET A G+N+P RT V
Sbjct: 631 PQIIKIREMLSRGIAVHHGGLLPIVKECIEILFAKTLVKVLFATETFAMGLNLPTRTVVF 690
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLF 353
SS K L E QM+GRAGRRG+D G V+++ +P + E +
Sbjct: 691 SSTRKHDGRAFRNLLPGEFTQMSGRAGRRGLDATGTVIVMAYNEALSPTDFKE----VAL 746
Query: 354 AGVEPLVSQFTASYGMVLNLL 374
L SQF +Y M+LNLL
Sbjct: 747 GTPTKLQSQFRLTYNMILNLL 767
Score = 40.0 bits (92), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 695 YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNV-----------IHE 743
+ KI D FT K+ A +++ R+ Q+E G + + N+ + E
Sbjct: 999 FSKINDLKAFTCPNFKQHYAEYRKM--RLLQMELEGLERLISDENLDLLPDYEQRLEVLE 1056
Query: 744 TRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG--- 800
T + G A I EL L ++ + L D +P+++ A+ + V EG
Sbjct: 1057 TLGFIDEKHNVVLKGRVACEINSGWELILTELVLDNFLGDFEPSEIVALLSCFVYEGRTQ 1116
Query: 801 ------IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS- 853
I RL K + I E + ++ V E R S L +E+ VE +F+
Sbjct: 1117 EEEPPLITPRLEKGKAKILEIAD---KLLRVFIEKRVS-LTSEEEDFVE-----SKRFAL 1167
Query: 854 -GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
+V WA+GL++ E+M +G + R++ R ++ ++
Sbjct: 1168 VNVVYEWANGLSFNEIMEISVESEGTIVRVITRLDEICREV 1208
>gi|164660939|ref|XP_001731592.1| hypothetical protein MGL_0860 [Malassezia globosa CBS 7966]
gi|159105493|gb|EDP44378.1| hypothetical protein MGL_0860 [Malassezia globosa CBS 7966]
Length = 1224
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 187/367 (50%), Gaps = 16/367 (4%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V + LSATV N E A W+G+ +
Sbjct: 377 DVEFVIFDEVHYVNDQERGVVWEEVIILLPAYVNTVLLSATVPNTQEFADWVGRTRRRDV 436
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--SLNYLQLSTSEVKPYKDGGSR 139
+I++ +RPVPL + L ++D G+ +++ + + + L Y G S
Sbjct: 437 YVISTPKRPVPLEHFLYAGKQLHKIVDANGRFLSKGVNEAADALLSKKEREAAYTTGSSA 496
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID--TLW-----HLRSRDML 192
+R R +S P + +LW L+ + +L
Sbjct: 497 QRGHRGGRGGGPAGRSGGSSGRGGGNSSAGGGVGRPRPSMASDRSLWVNIVGLLKKQSLL 556
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGL 248
P + F+F+++ C+ L + +L E SEV + ++R + + R+ P I + L
Sbjct: 557 PVVVFVFSKKKCEEYADSLPNTDLSTAKEKSEVHVLIERSLMRLKEEDRQVPQIARMRDL 616
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L +G+ HH+G LPI K +E LFQR LVKV+FATET A G+NMPAR+ V S + K +
Sbjct: 617 LSRGIGVHHSGLLPIVKELVELLFQRTLVKVLFATETFAMGVNMPARSVVFSGVRKNDGN 676
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG+D G VV++ + +++ L SQF +Y
Sbjct: 677 KFRNLLPGEYTQMAGRAGRRGLDKTG-VVIILSDNPELNPLNRMILGESTKLKSQFRITY 735
Query: 368 GMVLNLL 374
M+LNLL
Sbjct: 736 CMILNLL 742
>gi|86170414|ref|XP_966011.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|46362253|emb|CAG25191.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
Length = 1350
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 177/360 (49%), Gaps = 32/360 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 360 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 419
Query: 82 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
++ + RP PL Y + T + + L+ ++ K KD +
Sbjct: 420 HIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFK------------------KDNFIKA 461
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
N K MN+ + HQ N R + + SR+ P I F F+
Sbjct: 462 VNVIKEK-MNT----SEENHHQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFS 516
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAH 255
++ C+ + +L + E + EL RIL D P ++ LL+G+ H
Sbjct: 517 KKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIH 576
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL+K + +TS
Sbjct: 577 HGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSG 636
Query: 316 ELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QMAGRAGRRG+D+RG V +++ TP E KL LVSQF Y M+LNLL
Sbjct: 637 EYIQMAGRAGRRGLDDRGIVIIMLDTPLHW-REAHKLFVGEANRLVSQFHLGYNMILNLL 695
>gi|340057335|emb|CCC51680.1| putative ATP-dependent DEAD/H RNA helicae [Trypanosoma vivax Y486]
Length = 948
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 183/363 (50%), Gaps = 30/363 (8%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA+E A W+ IH
Sbjct: 133 LREVGCVIFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNANEFANWVESIHPG 192
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I ++ RPVPL Y A + ++DE GK N+ Q + + V G
Sbjct: 193 TKVHVIHTNYRPVPLHHYLYPCGADGIFLIVDEHGKFRED----NFRQ-AMASVGATSAG 247
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
+S+ A L++ A R+ P +++ + + +R+M P I
Sbjct: 248 EGNGESSKSGA---------------LARGKQKASRKGAEP-IMEIIKLVMNRNMYPIIV 291
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N E + V E+ L + R PAI+ LL +G
Sbjct: 292 FSFAKAECERNALALSKLNFNSTEEDALVTEVFNNAMECLAEEDRRLPAIEHLLPLLRRG 351
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 352 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRY 411
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVL
Sbjct: 412 LTGGEYIQMSGRAGRRGLDRVGVVIAMVNEAVEPETLRQITGGGADVLNSSFHLTYNMVL 471
Query: 372 NLL 374
NLL
Sbjct: 472 NLL 474
>gi|340517763|gb|EGR48006.1| nuclear exosomal RNA helicase [Trichoderma reesei QM6a]
Length = 1098
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 209/426 (49%), Gaps = 51/426 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 274 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 333
Query: 86 SSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ RP PL YF K A + ++DE+G +L +EV+ K N
Sbjct: 334 TDFRPTPLQNYFYPMGGKGARM-VVDERGTFNEENFNL-----VMAEVEEKKGSDPADFN 387
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
++ + + IN I R V ++ P I F F++R
Sbjct: 388 AKMKGKGKNKKTNKGGADE---GSDINKIIRMTV-----------RKNFNPVIVFNFSKR 433
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 257
C+ + + N D+ E + V + +A RE P I+ LL KGV HH+
Sbjct: 434 ECENMALKISNLNFNDDSEKAMVNKVFQSAIESLSEADRELPQIQNLLPLLQKGVGVHHS 493
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R +TS+E
Sbjct: 494 GLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVQRRPITSSEY 553
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D RG V+++ E +++ + L S F Y M+LNLL
Sbjct: 554 VQMAGRAGRRGLDARGVVIMMIDDKLEPEVAKQIVTGQQDRLNSAFYLGYNMILNLL--- 610
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
++ +S E ++E+ F + + + A + +L +Q+E D LT
Sbjct: 611 RIEAISPEF-----------------MLERCFHQFQNAASVPALEKDLMALQQEKDALT- 652
Query: 438 EISDDA 443
I D+A
Sbjct: 653 -IPDEA 657
>gi|403224053|dbj|BAM42183.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 1071
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 178/356 (50%), Gaps = 44/356 (12%)
Query: 26 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 84
V++ DE+HY++D+SRG VWEE+II PKEVQ++ LSATV N E A WIG I K +I
Sbjct: 295 VVIFDEIHYINDLSRGVVWEEVIIMLPKEVQLVMLSATVPNYVEFAEWIGSIMQKEVVII 354
Query: 85 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 144
++ R VPL Y LL G + + +ST +V K
Sbjct: 355 LTNFRSVPLKHYLYAHDRFF-LLVGSGGFNKEAYHIMHKYVSTLKVAEKK---------- 403
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204
A + +V ++ L L + D LP + F FNR+ C
Sbjct: 404 -------------------------ATFKGEVQKLQKLLKTLETEDKLPVVLFCFNRQKC 438
Query: 205 DAAVQYLEDCNL-LDECEMSEVELALKR-FRILYPDAVREPAIKGLLK----GVAAHHAG 258
+ + + + NL + + S++ L LK L + P ++ ++K G+ HH+G
Sbjct: 439 EQYAKDMPNLNLAYTKTQRSKIHLFLKESLEGLTEEDRNLPQLRKMIKLLARGIGVHHSG 498
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K +E LF RGL+KV+FATET A G+NMPAR+ V +S+ K LTS+E
Sbjct: 499 LLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGIKYRYLTSSEYT 558
Query: 319 QMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QMAGRAGRRG+D G+V + ++ ++ L S+F +Y M+L +
Sbjct: 559 QMAGRAGRRGLDTFGNVYIFCSDEAPDVQDLTNMIIERSTRLESRFRITYNMLLQI 614
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV--SEGIKVRLWKNNSSIYEP 815
G A I +EL L L IL DL P + AA+ ++ + + + ++ +
Sbjct: 900 GRIATFITTSDELTLTEALAQNILADLTPPECAAILSAFIYNDKAPEKEAPSPTLALQQA 959
Query: 816 STTVINVINVLDE-HRSSFLEL-QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+ VIN+ +D R+ + + QE H + S +V WASG+ + E+M
Sbjct: 960 KSQVINIHKKIDVVQRALGVRVSQEYHN----SLCNFTLSYLVYQWASGVPFNEIMELTD 1015
Query: 874 LDDGDLARLLRRTIDL 889
L DG + R++ R +L
Sbjct: 1016 LQDGHIVRVILRLDEL 1031
>gi|342184386|emb|CCC93868.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 951
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 180/363 (49%), Gaps = 28/363 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 134 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPG 193
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DE GK + + +G
Sbjct: 194 TKVHVIHTDYRPVPLHHYVYPCGADGIFLIVDEHGKFREDNFKRAMASVGAANGGSEANG 253
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G R++ L + A+R+S P +++ + + +R+M P I
Sbjct: 254 GESGRSA------------------PLVRGKQKAMRKSTEP-IMEIIKLVMNRNMYPIIV 294
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V+ + L + + PAI+ LL +G
Sbjct: 295 FSFAKAECERNALALSKLNFNNTEEDTLVKDVFNNAMQCLAVEDRKLPAIEHLLPLLRRG 354
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 355 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 414
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVL
Sbjct: 415 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVL 474
Query: 372 NLL 374
NLL
Sbjct: 475 NLL 477
>gi|71028712|ref|XP_763999.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350953|gb|EAN31716.1| hypothetical protein TP04_0364 [Theileria parva]
Length = 1069
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 190/364 (52%), Gaps = 44/364 (12%)
Query: 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 77
+S + + V++ DE+HY++D++RG VWEE+II P+ +Q++ LSATV N E WIG +
Sbjct: 285 DSVIGQISVVIFDEIHYINDLTRGVVWEEVIILLPRNIQLVMLSATVPNYLEFGEWIGNV 344
Query: 78 HGKTELIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K LI ++ RPVPL Y + KG + K + + + YK
Sbjct: 345 MQKEVLIIMTNHRPVPLKHYLYIYDRFFLIHGAKGFN---KEAYHIM---------YKYT 392
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
+ + N +K ++F + QV ++ L L S D +P +
Sbjct: 393 STLKINDKK----------STF--------------KGQVQKLQRLLKQLESEDKMPVVL 428
Query: 197 FIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 250
F F+R+ C+ + + + NL+ ++ + S++ L LK ++ R P ++ ++ +
Sbjct: 429 FCFSRQKCEQYAKDMPNLNLVYNKVQASKIHLFLKESLDGLSESDRNLPQLRKMVNLLTR 488
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGL+KV+FATET A G+NMPAR+ V +S+ K
Sbjct: 489 GIGVHHSGLLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGITYR 548
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
LTS+E QMAGRAGRRG+D G+V + ++ ++ L S+F +Y M
Sbjct: 549 YLTSSEYTQMAGRAGRRGLDTFGNVYIFCSDEPPDVQDLTNMMIERSTRLESRFRITYNM 608
Query: 370 VLNL 373
+L +
Sbjct: 609 LLQI 612
>gi|408395128|gb|EKJ74315.1| hypothetical protein FPSE_05612 [Fusarium pseudograminearum CS3096]
Length = 1267
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 183/390 (46%), Gaps = 40/390 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 404 DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTKQKDI 463
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS------TSEVKPYKD 135
+I++ +RPVPL Y + ++D + K + + + + +E
Sbjct: 464 YVISTPKRPVPLEHYLWAGKDIHKIVDSEKKFIEKGWKDAHFAIQGRDKQKPAETTVATR 523
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI--------------- 180
GG+ R N R + R S P +
Sbjct: 524 GGNPRGNQRGGTQRGGRGGGQQQRGGNQQRGRGGPPRASHAPGHMGRGGRAGGFTSVAQD 583
Query: 181 DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRI 234
LW +L+ + +LPA F+F+++ C+ L + + E S + + + K
Sbjct: 584 KNLWVHLVQYLKKQTLLPACIFVFSKKRCEENADALSNQDFCTASEKSHIHMIIEKSVAR 643
Query: 235 LYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 290
L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FATET A G+N
Sbjct: 644 LKPDDRQLPQIVRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFAMGLN 703
Query: 291 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC- 349
+P RT V S K L E QMAGRAGRRG+D G V++V P G ++
Sbjct: 704 LPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGLDDAPP 761
Query: 350 -----KLLFAGVEPLVSQFTASYGMVLNLL 374
++ L SQF +Y M+LNLL
Sbjct: 762 VADLRNMILGEPSKLRSQFRLTYNMILNLL 791
>gi|50251266|dbj|BAD28046.1| putative Helicase SKI2W [Oryza sativa Japonica Group]
Length = 1281
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 192/379 (50%), Gaps = 29/379 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV N E A WIG+ K
Sbjct: 393 DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTKQKKI 452
Query: 83 LITSS-RRPVPL---------TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+TS+ +RPVPL + K A L + K + +K + + L + KP
Sbjct: 453 HVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSSKLGMKPGS-KP 511
Query: 133 YKD---GGSRRRN---SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 186
G++ RN S + D + + + S + RRS+ + + +L
Sbjct: 512 GTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSESSFWMPLINNL 571
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI 245
+ ++P + F F++ CD + + + +L E SE+ L K F L P +
Sbjct: 572 LKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRLKGSDRNLPQV 631
Query: 246 KG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART----AV 297
G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 632 VGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTLKDLVV 691
Query: 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
SL K +L E QMAGRAGRRG+DN G V+++ E K L G +
Sbjct: 692 FDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLIVG-K 750
Query: 358 P--LVSQFTASYGMVLNLL 374
P L SQF +Y M+L+LL
Sbjct: 751 PTRLESQFRLTYTMILHLL 769
>gi|268536308|ref|XP_002633289.1| Hypothetical protein CBG06018 [Caenorhabditis briggsae]
Length = 1266
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 36/373 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I K
Sbjct: 395 DLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKI 454
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + T+ L ++D G+ + +K Y D
Sbjct: 455 NVISTDKRPVPLEHFLYTGQDGKTQRDLFKIIDRDGQFI---------------LKGYND 499
Query: 136 G-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ------VIDTLWHLRS 188
S+ +++ K S S G + + N+ P ++ + ++
Sbjct: 500 AKDSKTKSNEKEKAGGSGGRGGSRGGGGMKRGGGNSGGGKNWPGKNDKNIYLNLINFMKC 559
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPA 244
D LP + F+F+R+ CD Q L NL E E V ++R + + +
Sbjct: 560 ADQLPMVIFVFSRKRCDDNAQMLSSMNLTTEVEKQHVRTFFSQCIQRLKGSDKELPQVLT 619
Query: 245 IKGL-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
++ L L+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S++K
Sbjct: 620 MRELCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSITK 679
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVE-PLVS 361
+ R L E QMAGRAGRRG+D+ G VV++ + + K + +G L S
Sbjct: 680 HDGTERRLLNPGEYTQMAGRAGRRGLDSTGTVVIICKDSSIPLPDVLKNVISGQALRLES 739
Query: 362 QFTASYGMVLNLL 374
+F +Y M+LNLL
Sbjct: 740 KFRVTYSMILNLL 752
>gi|405122095|gb|AFR96862.1| translation repressor [Cryptococcus neoformans var. grubii H99]
Length = 1255
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 193/402 (48%), Gaps = 56/402 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 388 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDI 447
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ RPVPL + ++ + K + S L + K + G
Sbjct: 448 YVISTPMRPVPLEHFLWAGRETHRIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPL 507
Query: 139 RRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ---------------- 178
+R R A M + ++ T F + +N N + PQ
Sbjct: 508 QRTGGRGGASMRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAFGGGRGGRGGGRGG 567
Query: 179 ---------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--- 220
V+D +W +L+ +LP + F+F+++ C+ Q L LD C
Sbjct: 568 FGGSSRPSHVLDQNIWTHLISYLKKNTLLPVVNFVFSKKRCEEYAQTLS----LDLCTAK 623
Query: 221 EMSEV----ELALKRFR---ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
E SEV E AL R + P +R + G +G+ HH G LP+ K +E LF R
Sbjct: 624 EKSEVHITWERALTRLKGEDKTLPQILRMRELLG--RGIGVHHGGLLPLVKEVVEILFAR 681
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GLVKV+FATET A G+NMPA++ V S + K + L E QMAGRAGRRG+D G
Sbjct: 682 GLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTG 741
Query: 334 HVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 742 TVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 783
>gi|357110946|ref|XP_003557276.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Brachypodium distachyon]
Length = 993
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 174/354 (49%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 185 VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVY 244
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DE GK + Q S + + P G +R N
Sbjct: 245 TDYRPTPLQHYVFPSGGDGLYLVVDENGKFRE-----DSFQKSLNVLAPASGGDKKRENG 299
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ + I+A + + + + + R P I F F++R
Sbjct: 300 KR-------------------QKGISAGKPGEESDIFKMVKMIIQRQYDPVILFSFSKRE 340
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L ++ E +E +L D + P + +L +G+ HH+G
Sbjct: 341 CEFLAMQMAKMDLNEDDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSG 400
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 401 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYI 460
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID+RG +L+ +L G + L S F SY M+LN
Sbjct: 461 QMSGRAGRRGIDDRGICILMVDDKMEPSTAKMMLKGGADSLNSAFHLSYNMLLN 514
>gi|399216377|emb|CCF73065.1| unnamed protein product [Babesia microti strain RI]
Length = 988
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 171/356 (48%), Gaps = 42/356 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT++N E A WI +I H +I
Sbjct: 183 VIFDEIHYMRDRERGVVWEETIIMLPDTVTFVFLSATLSNTTEFAEWICRIKHQPCHVIY 242
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + +LDE H N K Y L+T ++P G R++
Sbjct: 243 TDFRPTPLQHYIFPANGDGIFMILDE---HKNFKQQAFYQALAT--LRPSSSGIDRKQ-- 295
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+R P + + +R P I F F++
Sbjct: 296 ---------------------------MRSRANPDIAKIVTMCENRKYTPIIIFCFSKNE 328
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A +L+ ++ E E S +E + L D + P +L +G+ HH G
Sbjct: 329 CEANATFLKQLDITSESEKSMIEEIFQNAMATLADDDRKLPQAVSILPMLKRGIGIHHGG 388
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L++V+F+TET + GINMPA+T V + L K +TS E
Sbjct: 389 LLPIIKEVIEILFQESLIRVLFSTETFSMGINMPAKTVVFTGLKKWDGQTHRIITSGEYI 448
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D+RG V+++ EE KL L S+F Y M+LNL+
Sbjct: 449 QMAGRAGRRGLDDRGLVIVMIDESMKIEEMKKLFLGDACRLDSKFYLGYNMLLNLI 504
>gi|395334752|gb|EJF67128.1| antiviral helicase [Dichomitus squalens LYAD-421 SS1]
Length = 1261
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 188/397 (47%), Gaps = 62/397 (15%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 393 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 452
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++++RPVPL Y L ++D N++ ++ K +D R++
Sbjct: 453 YVISTAKRPVPLEHYLYAGRDLHKIVDA---------DRNFI---SAGYKDAQDALRRKQ 500
Query: 142 NSRKHAD-------MNSNNIVTSFGQHQLSKNSI----------NAIRRSQVPQ------ 178
+ + A M + GQ + A R P
Sbjct: 501 DKEREAQGLPPVQRMGARAAAPQRGQRGGPQARGGGQRGGPPLRGAPARGATPSRGGGSG 560
Query: 179 ----------VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA 228
+ L +L+ R +LP + F F+++ C+ L + +L E SE+ +A
Sbjct: 561 RTFHQPDKNLYVHLLGNLKKRALLPVVVFTFSKKRCEENAGTLTNLDLSTSVEKSEIHVA 620
Query: 229 LKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 283
+++ + R+ P I+ L +G+ HH G LPI K +E LF RGLVKV+FATE
Sbjct: 621 VEKALSRLKGSDRQLPQIRRMRELLSRGIGVHHGGLLPIVKEVVEILFARGLVKVLFATE 680
Query: 284 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
T A G+NMPA+ V S + K + E QMAGRAGRRG+D G V++V
Sbjct: 681 TFAMGVNMPAKCVVFSHIRKHDGRSFRDILPGEYTQMAGRAGRRGLDATGTVIIVAN--- 737
Query: 344 GAEEC------CKLLFAGVEPLVSQFTASYGMVLNLL 374
+EC ++ L SQF +Y M+LNLL
Sbjct: 738 --DECPEQTTLSHMILGTPSKLQSQFRLTYNMILNLL 772
>gi|341880403|gb|EGT36338.1| hypothetical protein CAEBREN_19438 [Caenorhabditis brenneri]
Length = 1187
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 121/366 (33%), Positives = 185/366 (50%), Gaps = 20/366 (5%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I +
Sbjct: 314 DLEWVVFDEVHYINNEERGHVWEEVLIMLPTHVKIVMLSATVPNCVEFADWVGRIKNRRI 373
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RRPVPL + T+ L ++D G+ + + Y S+ K Y+
Sbjct: 374 NVISTDRRPVPLEHFLYTGQDGKTQRDLFKIIDRNGQFILK----GYNDAKESKAKIYEK 429
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
S + N ++ ++ + ++ D LP +
Sbjct: 430 ENSGAGGRGMVRGGGRGGGRGN--GGGGGGGGRNWPGKNDKNIYLNLINFMKCSDQLPMV 487
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE----LALKRFRILYPDAVREPAIKGL-LK 250
F+F+R+ CD Q L NL E E V ++R + + + ++ L L+
Sbjct: 488 VFVFSRKRCDDNAQMLSSMNLTTEVEKQHVRSFFAQCIQRLKGSDKELPQVLTMRELCLR 547
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S+ K + +
Sbjct: 548 GFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTEKR 607
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE-ECCKLLFAGVE-PLVSQFTASYG 368
L E QMAGRAGRRG+D+ G VV++ + + K + G L S+F +Y
Sbjct: 608 LLNPGEYTQMAGRAGRRGLDSTGTVVIICKDQSVPQPDILKNVICGQALRLESKFRVTYA 667
Query: 369 MVLNLL 374
M+LNLL
Sbjct: 668 MILNLL 673
>gi|367034876|ref|XP_003666720.1| hypothetical protein MYCTH_2311660 [Myceliophthora thermophila ATCC
42464]
gi|347013993|gb|AEO61475.1| hypothetical protein MYCTH_2311660 [Myceliophthora thermophila ATCC
42464]
Length = 1081
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 218/449 (48%), Gaps = 59/449 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 257 VIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 316
Query: 86 SSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ RP PL YF TK L ++DEKG + + + + D ++++
Sbjct: 317 TDFRPTPLQNYFFPAGTKGIYL-IVDEKGNFKEHNFNEAMAAIESKKGSDPADWSAKQKG 375
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
K+ N K +S + +VI + R P I F F +R
Sbjct: 376 RGKNKKTN--------------KGGEAPDEKSDIERVIKMII---KRSFQPVIVFNFAKR 418
Query: 203 GCDAAVQYLEDC--NLLDECEMSE--VELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
C+ + N DE +M E E AL++ D R P I +L KG+
Sbjct: 419 ECEQLALKTSNMKFNAPDEEQMVEKVFENALQQLS----DEDRSLPQISNILPLLRKGIG 474
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R LT
Sbjct: 475 VHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVQRRPLT 534
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S+E QMAGRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL
Sbjct: 535 SSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPDVARSVVVGQQDRLNSAFHLGYNMILNL 594
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
L ++ +S E ++E+ F + ++ + + EL +Q+E D
Sbjct: 595 L---RIEAISPEF-----------------MLERCFFQFQTASSVPQLERELANLQQERD 634
Query: 434 VLTSEISDDAI--DRKSRRLLSEAAYKEM 460
+ I D+A D +S R E K+M
Sbjct: 635 SMI--IPDEAAIKDYRSIRQQLEGYQKDM 661
>gi|359478571|ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
Length = 1379
Score = 188 bits (478), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 191/386 (49%), Gaps = 38/386 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 485 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKQI 544
Query: 83 LIT-SSRRPVPLT---------WYFSTKTALLP--LLDEKGKHMNRKLSLNYLQLSTSEV 130
+T +++RPVPL + LP L K H + LS T
Sbjct: 545 RVTGTTKRPVPLEHCIFYSGELYKICESETFLPQGLKTAKDVHKKKNLSTGGGGSGTYSG 604
Query: 131 KP--YKDGG-SRRRNSRKHADMNS-------NNIVTSFGQHQLSKNSIN--AIRRSQVPQ 178
P DG ++RR + N N + G +Q S S + RRS+
Sbjct: 605 PPSAAHDGARAQRRENPGRGKQNKYSGSQKVGNFYGTGGGNQNSSGSQSNWGSRRSEASL 664
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRIL-- 235
+ + L + +LP + F F++ CD + + +L E E+ + +R F L
Sbjct: 665 WLLLINKLSKKSLLPVVIFCFSKNRCDISADKMTGIDLTSSSEKHEIHVFCERAFSRLKG 724
Query: 236 ----YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
P +R ++ L +G+ HHAG LPI K +E LF RG+VKV+F+TET A G+N
Sbjct: 725 SDRNLPQVIRVQSL--LRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNA 782
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEEC 348
PART V SL K QL E QMAGRAGRRG+D G VV++ + P E +
Sbjct: 783 PARTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPDE--RDL 840
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
++ L SQF +Y M+L+LL
Sbjct: 841 KHVIVGSATRLASQFRLTYIMILHLL 866
>gi|321262386|ref|XP_003195912.1| RNA helicase; Ski2p [Cryptococcus gattii WM276]
gi|317462386|gb|ADV24125.1| RNA helicase, putative; Ski2p [Cryptococcus gattii WM276]
Length = 1202
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 193/402 (48%), Gaps = 56/402 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 414 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDI 473
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ RPVPL + ++ + K + S L + K + G
Sbjct: 474 YVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPL 533
Query: 139 RRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ---------------- 178
+R R A + S ++ T F + +N N + PQ
Sbjct: 534 QRTGGRGGAPVKSKDLPTGKNAPFTRVGAGRNHTNRGGGNGPPQAAFGGGRGGRGGSRGG 593
Query: 179 ---------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--- 220
V+D +W +L+ +LP + F+F+++ C+ Q L LD C
Sbjct: 594 FGGSSRPSHVLDQNIWTHLISYLKKNTLLPVVNFVFSKKRCEEYAQTLS----LDLCTAK 649
Query: 221 EMSEV----ELALKRFR---ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
E SEV E AL R + P +R + G +G+ HH G LP+ K +E LF R
Sbjct: 650 EKSEVHITWERALTRLKGEDKNLPQILRMRELLG--RGIGVHHGGLLPLVKEVVEILFAR 707
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GLVKV+FATET A G+NMPA++ V S + K + L E QMAGRAGRRG+D G
Sbjct: 708 GLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTG 767
Query: 334 HVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 768 TVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 809
>gi|412993030|emb|CCO16563.1| ATP-dependent RNA helicase DOB1 [Bathycoccus prasinos]
Length = 1124
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 180/358 (50%), Gaps = 30/358 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELIT 85
++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA E + W+ ++H ++
Sbjct: 219 VIYDEIHYMRDKERGVVWEESIVLLPDTVKYVFLSATIPNAREFSEWVCKVHDIPCHIVY 278
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S + ++D+ N+L+ + + + R +
Sbjct: 279 TDFRPTPLEHYIYPSGGDGIFLIVDKTSAFKED----NFLKAISIANEKGAEVAQARTAA 334
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
RK ++MN + Q +L++N+ V + + R+ P I F FN+
Sbjct: 335 RKASEMNGGDGT----QAKLAQNT----------DVFKIIKMIVDRNYDPVIVFAFNKGE 380
Query: 204 CDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLKGVAAHH 256
C++ L +L DE E ++ AL P P + L +G+ HH
Sbjct: 381 CESFANALHKVDLCDENEKEMIDAIYWNAMDALSESDKKLPQVASMPNL--LRRGLGVHH 438
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LFQ GL+KV+FATET++ G+NMPART V +S K +G +TS E
Sbjct: 439 SGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTCVFASPRKFDGTGFRWITSGE 498
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG VVL+ A +L +PL S F SY +LNL+
Sbjct: 499 YTQMSGRAGRRGKDDRGLVVLMVDEKMDAPTAKDMLRGRSDPLDSAFHVSYATLLNLM 556
>gi|242017221|ref|XP_002429090.1| Helicase, putative [Pediculus humanus corporis]
gi|212513954|gb|EEB16352.1| Helicase, putative [Pediculus humanus corporis]
Length = 1184
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 178/359 (49%), Gaps = 31/359 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV N + A W+G+ K
Sbjct: 344 DLEYVIFDEVHYINDFKRGHVWEEVVILLPSHVSIVMLSATVPNTLQFADWVGRTKQQKM 403
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++++RPVPL + T G N K + +T+E + K G
Sbjct: 404 YVISTTQRPVPLEHFLYT-----------GSGGNSKDERFLILSATNEFQ--KKGYLEAV 450
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
++K + N+V Q R+ + + HL+ D LP + FI ++
Sbjct: 451 EAKKKRESKQKNVVKERPQ---------TGRKQDTTMWVALIEHLQKHDKLPIVAFILSQ 501
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAI----KGLLKGVAAH 255
+ CD L +L E S V ++ ++ PD P I K L G+ H
Sbjct: 502 KRCDENASSLMSVDLTTAKEKSHVRHFFQQSIQKLKEPDQTL-PQILKMQKLLENGIGIH 560
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H G LPI K +E LFQ VK++FATET A G+NMPA+T V S+ K S + L +
Sbjct: 561 HKGILPILKEIVEMLFQERCVKILFATETFAMGVNMPAKTVVFDSIHKYDGSEKRMLLPS 620
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNL 373
E QMAGRAGRRG+D G V+++ E L G+ + + SQF +Y ++L L
Sbjct: 621 EYIQMAGRAGRRGLDKTGTVIIICREDMPTENNLIQLMKGIPKKIESQFRLTYSVILKL 679
>gi|195503022|ref|XP_002098478.1| GE23923 [Drosophila yakuba]
gi|194184579|gb|EDW98190.1| GE23923 [Drosophila yakuba]
Length = 1197
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 181/365 (49%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFSTKTA------LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + L+D +GK YLQ + Y+
Sbjct: 428 YVISTLKRPVPLTHFLYTGAGGKSRDDMFLLVDAQGK---------YLQGN------YEK 472
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R++ + A G SKN INA + + I + L+ + +P +
Sbjct: 473 AVERKKEMQGKAK----------GGPTGSKNHINA--KQEQYTWIGLIDFLKRNNKMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLILKDALQR 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|387593908|gb|EIJ88932.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm3]
gi|387595891|gb|EIJ93514.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm1]
Length = 976
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 179/371 (48%), Gaps = 46/371 (12%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V DEVHY+ D RG VWEE II P ++ I LSAT+ NA+E A WI IH +
Sbjct: 178 LRETHFVVFDEVHYMRDRERGVVWEETIILLPSTIRFIFLSATIPNAEEFARWIVSIHKQ 237
Query: 81 -TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+I + +RP PL Y ++ GK S +KP GG
Sbjct: 238 PCHVIYTEKRPTPLEHYV--------YVNAPGK--------------ASVIKP---GGQL 272
Query: 140 RRNSR-------KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+ S K S NI Q S RR ++ V+D L L+S + L
Sbjct: 273 KSISDQLFVMVDKDGAFQSKNIARI---QQRPAGSTGYTRRREMINVVDILRILKSTNNL 329
Query: 193 PAIWFIFNRRGCDAAVQYLE---DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL- 248
P I F F R+ C+ E D N ++ EM + + L + + P I GL
Sbjct: 330 PTIIFSFRRKECEVYAMVAEKEFDFNTEEDKEMIDT-IFTNALTTLREEDRKLPQILGLK 388
Query: 249 ---LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
L+G+ HH+G +PI K IE LFQ L+KV+FATET + G+NMPA++ + +S+ K
Sbjct: 389 ALLLRGIGVHHSGLMPIVKEIIEILFQENLLKVLFATETFSIGLNMPAKSVIFTSIKKFD 448
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQF 363
+TS E QM+GRAGRRG D G+V+L T +E K+L L S F
Sbjct: 449 GVQTRFITSGEYIQMSGRAGRRGTDKIGNVILALESTLTLSEKEIKKVLHGPSNTLDSAF 508
Query: 364 TASYGMVLNLL 374
SY +LN+L
Sbjct: 509 KLSYNTILNIL 519
>gi|302775370|ref|XP_002971102.1| hypothetical protein SELMODRAFT_441420 [Selaginella moellendorffii]
gi|300161084|gb|EFJ27700.1| hypothetical protein SELMODRAFT_441420 [Selaginella moellendorffii]
Length = 1311
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 182/374 (48%), Gaps = 36/374 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ +V DEVHY++D RG VWEE+II P+ V ++ LSATV N E A W+G+ K
Sbjct: 441 DIEWVVFDEVHYVNDAERGVVWEEVIIMLPQHVNLVLLSATVPNIREFADWVGRTKQKKI 500
Query: 83 LIT-SSRRPVPL--TWYFS-------TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+T +++RPVPL ++S LPL G + L + V P
Sbjct: 501 YVTGTTKRPVPLEHCLFYSGELHRICANETFLPL----GVKAAKDAHLAKTAVKKGPVAP 556
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
+ G G+ + N V KNS RS+ Q + L +++
Sbjct: 557 TQGGRGNVQGRGGPGGRGGRGNKVIP-----EEKNSRGGPWRSETSQWYGLINVLSKKNL 611
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRIL---YPDAVREPA 244
LP + F F++ CD + L +L E + + A R + P +R
Sbjct: 612 LPVVVFCFSKSRCDQSADSLTGSDLTTSTEKGVIRVFCNKAFSRLKGTDRQLPQVLR--- 668
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
I+ LLK G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART K
Sbjct: 669 IEELLKRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFHGFRK 728
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLV 360
QL E QMAGRAGRRG+D G V+++ P EG + +LL L
Sbjct: 729 HDGKSFRQLYPGEYTQMAGRAGRRGLDTVGTVIVMCWDDIPDEG--DLRRLLTGKATKLE 786
Query: 361 SQFTASYGMVLNLL 374
SQF +Y M+LNLL
Sbjct: 787 SQFRLTYTMILNLL 800
>gi|58271052|ref|XP_572682.1| translation repressor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228941|gb|AAW45375.1| translation repressor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1185
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 195/403 (48%), Gaps = 58/403 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ +V DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 408 DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDI 467
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG---S 138
+I++ RPVPL + ++ + K + S L + K + G
Sbjct: 468 YVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPV 527
Query: 139 RRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ---------------- 178
+R R A + + ++ T F + +N N + PQ
Sbjct: 528 QRTGGRGGAAIRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAFGGGRGGRGGGRGG 587
Query: 179 ---------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--- 220
V+D +W +L+ +LP + F+F+++ C+ Q L LD C
Sbjct: 588 FGGSSRPSHVLDQNIWTHLISYLKKNMLLPVVNFVFSKKRCEEYAQTLS----LDLCTAK 643
Query: 221 EMSEV----ELALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 272
E SEV E AL R + P +R ++ LL +G+ HH G LP+ K +E LF
Sbjct: 644 EKSEVHITWERALTRLKGEDKTLPQILR---MRELLSRGIGVHHGGLLPLVKEVVEILFA 700
Query: 273 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332
RGLVKV+FATET A G+NMPA++ V S + K + L E QMAGRAGRRG+D
Sbjct: 701 RGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTT 760
Query: 333 GHVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
G V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 761 GTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 803
>gi|407849043|gb|EKG03906.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 948
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 180/366 (49%), Gaps = 33/366 (9%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 129 LREVGCVIFDEVHYMRDKSRGVVWEETITLLPEGCQYVFLSATIPNAREFADWVESIHPG 188
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DE+GK + +S+ + G
Sbjct: 189 TKVHVIHTDYRPVPLQHYLYPCGADGIFLIVDEQGKFRDDNFRR---AMSSMGAMDAEAG 245
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G+ + K A ++ G+ + + I ++ + +M P I
Sbjct: 246 GANGADVSKAA-------TSTRGKRKPPRKGTQPI--------MEIIKLAMDHNMYPIIV 290
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL--- 249
F F+R C+ L N + M E L + F L D + PAI+ LL
Sbjct: 291 FSFSRAECERNALALSKLNFNN---MEEDALVTEVFSNAMECLAEDDRQLPAIEHLLPLL 347
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+GV HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 348 KRGVGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEK 407
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
LT E QM+GRAGRRG+D G V+ + E +L G + L S F +Y
Sbjct: 408 NRYLTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPETLKQLTGGGADVLNSSFHLTYN 467
Query: 369 MVLNLL 374
MVLNLL
Sbjct: 468 MVLNLL 473
>gi|336268634|ref|XP_003349081.1| hypothetical protein SMAC_06856 [Sordaria macrospora k-hell]
gi|380093707|emb|CCC08671.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1294
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 184/391 (47%), Gaps = 42/391 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKQKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK------- 134
+I++ +RPVPL Y + ++D + K + L + + P
Sbjct: 490 YVISTPKRPVPLEHYLWAGKKIHKIVDAEKKFLETGWKEANLSIQGKDKPPKAIEAPTGP 549
Query: 135 -DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI------------- 180
GG+ +R R A +N + R S P +
Sbjct: 550 ARGGANQRG-RGGAQRGANQQRGGARGGGQQRGRGGPPRASHAPGHMGRTGRQGGFTSAA 608
Query: 181 --DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-F 232
LW L+ ++LPA F+F+++ C+ L + + E S + + ++R
Sbjct: 609 QDKNLWVHLVQFLKKENLLPACIFVFSKKRCEENADALSNQDFCTAQEKSHIHMIIERSI 668
Query: 233 RILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
L P+ P I + L +G+A HH G LPI K +E LF LVKV+FATET A G
Sbjct: 669 ARLKPEDRVLPQIIRLRELLSRGIAVHHGGLLPIVKEMVEILFAETLVKVLFATETFAMG 728
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE-- 346
+N+P RT V S K L E QMAGRAGRRG+D G V++V P G E
Sbjct: 729 LNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGCVIIV--PPGGDEAP 786
Query: 347 ---ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ +++ L SQF +Y M+LNLL
Sbjct: 787 PVTDLRQMMLGEPSKLRSQFRLTYNMILNLL 817
>gi|156085204|ref|XP_001610085.1| DSHCT (NUC185) domain containing DEAD/DEAH box helicase family
protein [Babesia bovis]
gi|154797337|gb|EDO06517.1| DSHCT (NUC185) domain containing DEAD/DEAH box helicase family
protein [Babesia bovis]
Length = 986
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 198/413 (47%), Gaps = 61/413 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELIT 85
++ DEVHY+ D RG VWEE II P++V ++ LSAT+ N+ E A WI +I +I
Sbjct: 193 VIFDEVHYMRDAERGVVWEETIILIPQKVNLVFLSATIPNSIEFAEWICRIKNMPCNVIA 252
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
+ RP PL Y T+ LN + L D G R+++
Sbjct: 253 TDYRPTPLQHYIYTQ------------------KLNGINLVLD------DSGRFRQDAFN 288
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 205
+A +NI G+ + +N+ ++ +VI T+ H + PAI F F++ C+
Sbjct: 289 NAMKTIDNI--EEGRRKRVRNT------KEIEEVI-TMCH--EKKFTPAIVFAFSKSECE 337
Query: 206 AAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAAHHAGCL 260
A L+ ++ DE E + + E+ L D + P +L +G+ HH G L
Sbjct: 338 ANATVLKSLDMTDEAEKTLITEIYQNAMATLADDDRKLPQTVFMLPLLRRGIGIHHGGLL 397
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 320
PI K IE LFQ GL+KV+F+TET + G+NMPAR V ++LSK +TS E QM
Sbjct: 398 PIIKEIIEILFQEGLIKVLFSTETFSMGVNMPARCVVFTNLSKWDGQTNRLITSGEYIQM 457
Query: 321 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 380
AGRAGRRG+D G V+++ EE + L S F Y M+LNL M
Sbjct: 458 AGRAGRRGLDEHGLVIIMMDRGIKPEEAKAIFMGKANRLDSSFHLGYNMLLNL------M 511
Query: 381 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ N + + L+E+SF + +++L ++++E D
Sbjct: 512 RIENTTPEF--------------LIERSFLQFQRDKHSRKFQEQLIEVRREID 550
>gi|392408495|ref|YP_006445102.1| superfamily II RNA helicase [Desulfomonile tiedjei DSM 6799]
gi|390621631|gb|AFM22838.1| superfamily II RNA helicase [Desulfomonile tiedjei DSM 6799]
Length = 696
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 183/355 (51%), Gaps = 49/355 (13%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-E 82
VD+++LDE HYL DI RG VWEE++IY P+ V+++ LSAT++NA++++ W+ + T
Sbjct: 168 VDIVILDEAHYLGDIDRGVVWEEVLIYLPERVRVLLLSATISNAEDVSRWLMHVRKTTCS 227
Query: 83 LITSSRRPVPLTWYFSTKTALL-PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++ ++ RPVPL F T LL P +G + K+ +YL+ + G RR
Sbjct: 228 VVQATERPVPLHVMFLTPQNLLTPFF--RGSRLFPKVQ-SYLK---------TEKGHRRF 275
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ DMN V LR +LPAI F+ +R
Sbjct: 276 GASPFPDMNRIMSV------------------------------LREFQLLPAIIFLKSR 305
Query: 202 RGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 259
CD A++ L L +E SE ++ + +P+ + LL + +HHAG
Sbjct: 306 ADCDKALESLNPSPLDPEEGGFSEAVMSESKN---FPELSAQRQFDQLLTRRAGSHHAGQ 362
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP W+ IE + G ++V+F+T T+AAG+N PART VL + + +TS +L Q
Sbjct: 363 LPGWRLLIERMMVAGHLEVIFSTSTVAAGVNFPARTVVLLQSDRFNGRTFVDMTSTDLHQ 422
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
M GRAGRRG+DN G +++ Y +LL + EPL S+ ++ MVLNLL
Sbjct: 423 MTGRAGRRGMDNAGFTLIIPGRYMDLPLVRELLLSEPEPLQSRIGVNFSMVLNLL 477
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG-----IKVRLWKNNSSI 812
G AA +R ++ L +A ++R + DL QLAA+ A V + I LW+ + +
Sbjct: 537 GRWAARLRLDHPLLIAQLIREREFSDLNSKQLAALMAPFVMDKDKEIVISRELWQRTNPL 596
Query: 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 872
++ +++ + L E L G ++P + + V WA + W E++ +
Sbjct: 597 WKRFRSMLQKLKPLAE-------LLINRGFDVPNIMFWP-AAAVFLWAEEVEWGELIENV 648
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
D+GDLA L+ RT D L Q+
Sbjct: 649 DADEGDLAMLILRTADHLRQL 669
>gi|134115014|ref|XP_773805.1| hypothetical protein CNBH2570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256433|gb|EAL19158.1| hypothetical protein CNBH2570 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1275
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 195/403 (48%), Gaps = 58/403 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ +V DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K
Sbjct: 408 DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDI 467
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG---S 138
+I++ RPVPL + ++ + K + S L + K + G
Sbjct: 468 YVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRKQDKEREANGLPPV 527
Query: 139 RRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ---------------- 178
+R R A + + ++ T F + +N N + PQ
Sbjct: 528 QRTGGRGGAAIRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAFGGGRGGRGGGRGG 587
Query: 179 ---------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--- 220
V+D +W +L+ +LP + F+F+++ C+ Q L LD C
Sbjct: 588 FGGSSRPSHVLDQNIWTHLISYLKKNMLLPVVNFVFSKKRCEEYAQTLS----LDLCTAK 643
Query: 221 EMSEV----ELALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 272
E SEV E AL R + P +R ++ LL +G+ HH G LP+ K +E LF
Sbjct: 644 EKSEVHITWERALTRLKGEDKTLPQILR---MRELLSRGIGVHHGGLLPLVKEVVEILFA 700
Query: 273 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332
RGLVKV+FATET A G+NMPA++ V S + K + L E QMAGRAGRRG+D
Sbjct: 701 RGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTT 760
Query: 333 GHVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
G V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 761 GTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 803
>gi|452822987|gb|EME30001.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1258
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 186/365 (50%), Gaps = 53/365 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ +V DEVHY++D RG VWEE+II P ++II LSATV NA + A W+G+ K
Sbjct: 444 DIEFVVFDEVHYINDEERGVVWEEVIIMLPPRIKIIMLSATVPNALDFAKWVGRTRQSKV 503
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ RPVPL K ++ L+D KG R L +Y ++S + K+ + R
Sbjct: 504 FVISTQYRPVPLQHSAFWKGDMITLVDAKG----RFLEESYRRIS----QIVKEEKANRL 555
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
S +T+F LR + + P + F F++
Sbjct: 556 GGSFGGKKGSWTKLTNF---------------------------LRKQQLTPTVVFCFSK 588
Query: 202 RGCDAAVQYLEDCNLLDEC-------EMSEVELA-LKRFRILYPDAVREPAIKGLLK-GV 252
R C+ A L+ + + + E +A LKR P R +K +LK G+
Sbjct: 589 RRCEEAADSLQAVDFTEGASEKSNIHQFVEHSIARLKREDRQLPQIER---LKEMLKRGI 645
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HHAG LPI K +E LFQ+GLV+++FATET A G+NMPART V SSL K +
Sbjct: 646 AVHHAGILPIMKECVEILFQKGLVRILFATETFAMGVNMPARTVVFSSLRKHDGRSFRFV 705
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP---LVSQFTASYGM 369
E QMAGRAGRRG+D G+V++ + E + L + P L S+F +Y M
Sbjct: 706 EPGEYIQMAGRAGRRGLDAVGNVLIYLS--EDIPDAATLKYILTGPPIRLSSRFRLTYNM 763
Query: 370 VLNLL 374
+LNLL
Sbjct: 764 ILNLL 768
>gi|300121453|emb|CBK21972.2| unnamed protein product [Blastocystis hominis]
Length = 865
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 179/359 (49%), Gaps = 44/359 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELIT 85
++ DE+HY+ D RG VWEE II P V+ + LSAT+ NA + AGWI QIH K ++
Sbjct: 73 VIYDEIHYMRDKERGVVWEESIILLPDSVRFVFLSATIPNARDFAGWIAQIHNQKVNVVY 132
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RPVPL Y + L ++D+KG + N +L LST E + +D + +
Sbjct: 133 TEYRPVPLQHYLYPTGGDGLFLVIDDKGQFREQNFAKALAGQGLSTLESQVLEDKKKKTK 192
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ ++ +++ T+ R++ P I F F++
Sbjct: 193 KPTE-----------------------------ELQRIVSTVME---RNLDPLIVFSFSK 220
Query: 202 RGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAH 255
+ C+ L D DE ++ + E+ L D P +K +L +GV H
Sbjct: 221 KDCETYALLLAKLDFTSADEKKLIQ-EIYKNAISSLSVDDRNLPQVKSVLPLLTRGVGIH 279
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H G LPI K IE LFQ GL+K++FATET A GINMPA+T + +SL K +T
Sbjct: 280 HGGLLPIIKETIEILFQEGLLKILFATETFAMGINMPAKTCIFTSLRKFDGETYRMITPG 339
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRR DN+G V+ + A+E +L +PL S F Y M+LNLL
Sbjct: 340 EYIQMSGRAGRRNKDNKGIVIQIVDEAGKADEIKHILTGKADPLFSSFHLGYNMLLNLL 398
>gi|357138765|ref|XP_003570958.1| PREDICTED: uncharacterized helicase C550.03c-like [Brachypodium
distachyon]
Length = 1274
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 192/374 (51%), Gaps = 23/374 (6%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV NA E A WIG+ K
Sbjct: 389 DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNAVEFAEWIGRTKQKKI 448
Query: 83 LITSS-RRPVPL--TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE--VKPYKDGG 137
+TS+ +RPVPL ++S +T + D R+ + ++++ VKP G
Sbjct: 449 RVTSTNKRPVPLEHCLFYSGETYKVCEKDMFLTQGFREAKDTFKMKNSNKLGVKPGSKSG 508
Query: 138 S---RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT--LW-----HLR 187
+ R ++ D +S +H + + AI++S W +L
Sbjct: 509 TPATRPGTQGRNPDTSSRGKDQKHPKHHHTNSGAAAIQQSSSGSKRSESSFWMPLINNLL 568
Query: 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIK 246
+ ++P + F F++ CD + + +L + SE+ + K F L P +
Sbjct: 569 KKSLVPVVIFCFSKNRCDRSADSMFGADLTSNSDKSEIRVFCDKAFSRLKGSDRNLPQVV 628
Query: 247 G----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 302
G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V SL
Sbjct: 629 GIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDSLR 688
Query: 303 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--LV 360
K +L E QMAGRAGRRG+D G V+++ E K L G +P L
Sbjct: 689 KFDGKEHRKLLPGEYIQMAGRAGRRGLDTIGTVMIMCRDEIPEESDLKNLIVG-KPTRLE 747
Query: 361 SQFTASYGMVLNLL 374
SQF +Y M+L+LL
Sbjct: 748 SQFRLTYTMILHLL 761
>gi|389603290|ref|XP_001568941.2| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505796|emb|CAM44074.2| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 954
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 183/363 (50%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 131 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPT 190
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I ++ RPVPL Y A + ++DEKGK N+ + TS
Sbjct: 191 TKVHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM------- 239
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G+ + A + N+ + ++ SQ +++ + + R+M P I
Sbjct: 240 GAEGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIV 297
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ LL +G
Sbjct: 298 FSFAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRG 357
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 358 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 417
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 418 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVL 477
Query: 372 NLL 374
NLL
Sbjct: 478 NLL 480
>gi|46111799|ref|XP_382957.1| hypothetical protein FG02781.1 [Gibberella zeae PH-1]
Length = 1271
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 185/394 (46%), Gaps = 44/394 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 404 DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTKQKDI 463
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS------TSEVKPYKD 135
+I++ +RPVPL Y + ++D + K + + + + +E
Sbjct: 464 YVISTPKRPVPLEHYLWAGKDIHKIVDSEKKFIEKGWKDAHFAIQGRDKQKPAETTVATR 523
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI----RRSQVPQVI----------- 180
GG+ R N R G Q N R S P +
Sbjct: 524 GGNPRGNQRGGTQRGGPQRGGRGGGQQRGGNQQRGRGGPPRASHAPGHMGRGGRAGGFTS 583
Query: 181 ----DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-K 230
LW +L+ + +LPA F+F+++ C+ L + + E S + + + K
Sbjct: 584 VAQDKNLWVHLVQYLKKQTLLPACIFVFSKKRCEENADALSNQDFCTASEKSHIHMIIEK 643
Query: 231 RFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 286
L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FATET A
Sbjct: 644 SVARLKPDDRQLPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFA 703
Query: 287 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
G+N+P RT V S K L E QMAGRAGRRG+D G V++V P G +
Sbjct: 704 MGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGLD 761
Query: 347 ECC------KLLFAGVEPLVSQFTASYGMVLNLL 374
+ ++ L SQF +Y M+LNLL
Sbjct: 762 DAPPVADLRNMILGEPSKLRSQFRLTYNMILNLL 795
>gi|407407933|gb|EKF31542.1| RNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 948
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 181/366 (49%), Gaps = 33/366 (9%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 129 LREVGCVIFDEVHYMRDKSRGVVWEETITLLPEGCQYVFLSATIPNAREFADWVESIHPG 188
Query: 81 T--ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
T +I + RPVPL Y A + ++DE+GK + +S+ + G
Sbjct: 189 TNVHVIHTDYRPVPLQHYLYPCGADGIFLIVDEQGKFRDDNFRR---AMSSMGAMDAEAG 245
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G+ + K A TS ++ R+ P +++ + +M P I
Sbjct: 246 GANGADVSKAA--------TS------TRGKRKPFRKGTQP-IMEIIKLTMDHNMYPIIV 290
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL--- 249
F F++ C+ L N + M E L + F L D + PAI+ LL
Sbjct: 291 FSFSKAECERNALALSKLNFNN---MEEDALVTEVFSNAMECLAEDDRQLPAIEHLLPLL 347
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+GV HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 348 KRGVGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEK 407
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
LT E QM+GRAGRRG+D G V+ + E +L G + L S F +Y
Sbjct: 408 NRYLTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPETLKQLTGGGADVLNSSFHLTYN 467
Query: 369 MVLNLL 374
MVLNLL
Sbjct: 468 MVLNLL 473
>gi|401420326|ref|XP_003874652.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490888|emb|CBZ26152.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 954
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 174/363 (47%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 131 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPT 190
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DEKGK + + T V
Sbjct: 191 TKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGTEGVANGVGA 250
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
S K G H+ + + +++ + R+M P I
Sbjct: 251 AGPANGSSKDPR----------GNHKGGGGRSHGGSSQSMMEIVKLVM---DRNMYPVIV 297
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ L +G
Sbjct: 298 FSFAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLHPLLKRG 357
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 358 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 417
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 418 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVL 477
Query: 372 NLL 374
NLL
Sbjct: 478 NLL 480
>gi|449310626|gb|AGE92540.1| ATP-dependent RNA helicase [Leishmania braziliensis]
Length = 954
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 183/363 (50%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 131 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPT 190
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I ++ RPVPL Y A + ++DEKGK N+ + TS
Sbjct: 191 TKVHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM------- 239
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G+ + A + N+ + ++ SQ +++ + + R+M P I
Sbjct: 240 GAEGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIV 297
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ LL +G
Sbjct: 298 FSFAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRG 357
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 358 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 417
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 418 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVL 477
Query: 372 NLL 374
NLL
Sbjct: 478 NLL 480
>gi|449310650|gb|AGE92552.1| ATP-dependent RNA helicase, partial [Leishmania braziliensis]
Length = 949
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 183/363 (50%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 126 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPT 185
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I ++ RPVPL Y A + ++DEKGK N+ + TS
Sbjct: 186 TKVHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM------- 234
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G+ + A + N+ + ++ SQ +++ + + R+M P I
Sbjct: 235 GAEGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIV 292
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ LL +G
Sbjct: 293 FSFAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRG 352
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 353 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 412
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 413 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVL 472
Query: 372 NLL 374
NLL
Sbjct: 473 NLL 475
>gi|391343562|ref|XP_003746078.1| PREDICTED: helicase SKI2W [Metaseiulus occidentalis]
Length = 1137
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 181/370 (48%), Gaps = 55/370 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DE HY++D RG VWEE++I P V ++ LSATV NA LA WIG+I K
Sbjct: 350 DLEWVIFDECHYINDAERGVVWEEVLIMLPSHVNLVLLSATVPNALNLADWIGRIKQKRI 409
Query: 82 ELITSSRRPVPLTWYF---------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
+I +++RPVPL Y K ALL +LD G+ S NYL++ +
Sbjct: 410 HVIATTKRPVPLEHYLYVGRIGASSEQKQALL-ILDSAGQFK----SQNYLKVCAA---- 460
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+ S N RS+ + L +L+ +D
Sbjct: 461 ---------------------------KKSTSNNWRGPDERSRY---LTLLQYLQKKDAC 490
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-LYPDAVREPAI---KGL 248
PAI F +R+ CD L + ++ E S++ + + L + R P + K L
Sbjct: 491 PAILFTLSRKRCDDNAASLANVDMTTATEKSQIHRFIAQCTARLSSEDRRLPQVETLKLL 550
Query: 249 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
LK G+ HH+G LPI K +E LFQRGL+K++FATET A G+NMPART V + K
Sbjct: 551 LKNGIGVHHSGILPIMKEVVEMLFQRGLIKILFATETFAMGVNMPARTVVFDRIRKYDGC 610
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L E QMAGRAGRRG D G V +++ + + ++ L S+F +
Sbjct: 611 QFRDLLPAEYIQMAGRAGRRGKDTVGTVLIMIHSDVPDSGSLQTMMMGKPHSLQSKFKVT 670
Query: 367 YGMVLNLLAG 376
M+LNL AG
Sbjct: 671 TAMILNLKAG 680
>gi|347969420|ref|XP_312880.4| AGAP003182-PA [Anopheles gambiae str. PEST]
gi|333468516|gb|EAA08476.4| AGAP003182-PA [Anopheles gambiae str. PEST]
Length = 1223
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 44/366 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D RG VWEE++I P V I+ LSATV N E A W+G+ K
Sbjct: 385 DLEYVIFDEVHYITDSDRGHVWEEVLILLPDHVCIVMLSATVPNTIEFANWVGKTKKKRV 444
Query: 83 -LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++++++RPVPL Y T GK + + + ++ + +DG R +
Sbjct: 445 WVVSTAKRPVPLEHYLYTGFG--------GKSKD-----DSFLIVNAQSQFVQDGYRRAK 491
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIW 196
S + S T N + R+ Q TLW HL+ ++ LP +
Sbjct: 492 ESYEAKQAKSTGRRT---------NGPYSQRQEQ------TLWVGLIDHLQKKEKLPVVA 536
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKG----LLKG 251
F +R CD + L C+L E + ++ + L P P ++ L +G
Sbjct: 537 FTLSRNRCDNNAEALMSCDLTTAREKYAITSFFQQCLQRLVPADRVLPQVQQIQSCLERG 596
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH+G LPI K +E LF RGLVK++FATET A G+NMPART + S K
Sbjct: 597 IGIHHSGILPILKEIVEMLFARGLVKILFATETFAMGVNMPARTVIFDSTRKFDGQAFRP 656
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L +E QMAGRAGRRG+D G V+++ P +G E ++ L SQF +Y
Sbjct: 657 LQPSEYTQMAGRAGRRGLDKTGTVIILCKQNLPLDG--ELKTMILGKPVRLESQFRLTYA 714
Query: 369 MVLNLL 374
M+L LL
Sbjct: 715 MMLYLL 720
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 729 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 788
S + ++ R V+ E + +D QV G A + G+NEL + ++ IL DL+PA+
Sbjct: 1020 SLYPDYCRKLQVLQELKYIDDMQQVAMK-GRVACEM-GQNELMITELVMRNILTDLQPAE 1077
Query: 789 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE-------KHG 841
+AA+ +SLV + S + L + + F E++ ++G
Sbjct: 1078 IAALLSSLVFQA--------------KSDVTPKLTETLQKAEAQFREVENDIRLVERQYG 1123
Query: 842 VEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898
V C + G+ E WA + E+M+ + +G + R +++ + L +
Sbjct: 1124 VTDVCKKEELNFGLTEVVYEWARNKPFAEIMLLTDIKEGIIVRCIQQLNETLCNVKDAAR 1183
Query: 899 V--DQRLQKNAVDASNVMDR 916
+ D L +ASN + R
Sbjct: 1184 IIGDPVLHSKMEEASNAIKR 1203
>gi|255949946|ref|XP_002565740.1| Pc22g18350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592757|emb|CAP99123.1| Pc22g18350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1078
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 186/361 (51%), Gaps = 29/361 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DE+HY+ D++RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 262 EVQWVVFDEIHYMRDVNRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWIVKMHDQPC 321
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ ++ RP PL YF + + ++DEKG ++ + D ++
Sbjct: 322 HVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFREENFQKAMSAIADKKGDDPADALAK 381
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ K +N I + I I R + ++ P I F F
Sbjct: 382 RKGKGKDKQINKGGI--------KGPSDIYKIVR-----------MIMLKNYNPVIVFSF 422
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 254
++R C+A + D+ E + V + +L P+ + P I+ +L +G+
Sbjct: 423 SKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQQGIGV 482
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + + +T
Sbjct: 483 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQRWVTP 542
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 373
+E QM+GRAGRRG+D+RG +V++ E K + G + L S F Y M+LNL
Sbjct: 543 SEFIQMSGRAGRRGLDDRG-IVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 601
Query: 374 L 374
+
Sbjct: 602 M 602
>gi|225435997|ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis
vinifera]
Length = 994
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ P+ + + LSATV NA E A W+ ++H + ++
Sbjct: 182 VIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY 241
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKGK + Q + + + P +G +R N
Sbjct: 242 TDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPAGEGDKKRENG 296
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ + +V G+ + + + R P I F F++R
Sbjct: 297 KRQKGL----VVGRAGEES---------------DIFKMVKMIIQRQYDPVILFSFSKRD 337
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L D+ E +E +L D + P + +L +G+ HH+G
Sbjct: 338 CEFLAMQMARMDLNDDNEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 397
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K ++S E
Sbjct: 398 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEFI 457
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 458 QMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLN 511
>gi|328865535|gb|EGG13921.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1279
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 180/361 (49%), Gaps = 32/361 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHYL+D RG VWEE+II P V+II LSATVAN E A WIG+
Sbjct: 477 DIEWVIFDEVHYLNDYERGVVWEEVIIMLPAHVKIILLSATVANPLEFADWIGRTKKMPI 536
Query: 82 ELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
+I + +RPVPL + T + L ++D NR N+L +G S
Sbjct: 537 YVIGTLKRPVPLEHFIHTPSNDLFKIVDS-----NR----NFLM----------EGYSNA 577
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
NS D N++ + GQH ++ S ++ ++ ++I L + + LP I F F+
Sbjct: 578 YNSLYKVDKNNDKNKKTTGQHG-NQASFASVSKTGWTRLIGLL---KEKQQLPVIVFSFS 633
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEV-----ELALKRFRILYPDAVREPAIKGLL-KGVAA 254
+ C Q L +L + E +L R R D + IK L +G+
Sbjct: 634 KNKCQEYAQSLGGHLVLTSNSEKNIIKIFIEESLARLRPEDKDLPQIHQIKDFLERGIGI 693
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K +E LF + LVKV+FATET A G+NMPA+T V S K L
Sbjct: 694 HHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSHTRKHDGINFRDLLP 753
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E QM+GRAGRRG+D G V++ + ++ L SQF +Y M+LNL
Sbjct: 754 GEYTQMSGRAGRRGLDKVGTVIITAWKDMPDSSSYSSMILGQPSKLNSQFRLTYNMILNL 813
Query: 374 L 374
L
Sbjct: 814 L 814
>gi|391335944|ref|XP_003742345.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Metaseiulus occidentalis]
Length = 1020
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 171/358 (47%), Gaps = 40/358 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + ++
Sbjct: 222 VIFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVY 281
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RPVPL Y + L ++DEKG K N L + LQ + K D G R +
Sbjct: 282 TEYRPVPLQHYIFPAGGDGLHLVVDEKGVFKEDNFNLVMTTLQSAAGNAK--GDAGLRGK 339
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+D N IV + RD P I F F++
Sbjct: 340 KGGFRSDTNCYKIVK----------------------------MIMERDYSPVIIFSFSK 371
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHH 256
R C+A + +L E V D RE P ++ L++G+A HH
Sbjct: 372 RECEAYATQMSKLDLNSAEEKKLVNEVFNNAMEALSDEDRELPQVQNVLPLLMRGIAIHH 431
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
G LPI K IE LF GL+K +FATET A G+NMPART + ++ K +TS E
Sbjct: 432 GGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTNARKYDGQSFRWVTSGE 491
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+L+ ++ ++ + + S F +Y MVLNLL
Sbjct: 492 YIQMSGRAGRRGLDDRGIVILMIDEKMSSQSAKDIVKGAPDAINSAFHLTYNMVLNLL 549
>gi|297837559|ref|XP_002886661.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp.
lyrata]
gi|297332502|gb|EFH62920.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 172/356 (48%), Gaps = 32/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 177 IIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY 236
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DEK K + Q S + + P +G +R N
Sbjct: 237 TDYRPTPLQHYVFPAGGNGLYLVVDEKAKFHE-----DSFQKSLNALVPTNEGDKKRDNG 291
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + ++ G+ + + + R P I F F+++
Sbjct: 292 KSQKGL----VMGKLGEES---------------DIFKLVKMIIQRQYDPVILFSFSKKE 332
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A + +L + E VE +L D + P + +L +G+ HH+G
Sbjct: 333 CEALAMQMSKMDLNSDDEKDAVETIFTSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSG 392
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 393 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYI 452
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN L
Sbjct: 453 QMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQL 508
>gi|301111187|ref|XP_002904673.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095990|gb|EEY54042.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 1374
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 183/364 (50%), Gaps = 32/364 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DE+HY++D RG VWEE+II P+ + ++ LSAT N E + WIG+ K
Sbjct: 471 DIEWVIFDEIHYINDSERGVVWEEVIIMLPEHIGMVFLSATTPNHLEFSDWIGRTKKQKI 530
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + L + D +TS P G ++ +
Sbjct: 531 HVISTYKRPVPLQHFLYAGKELFKIYD-----------------ATSGYLPNAHGAAKSK 573
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-----VIDTLWHLRSRDMLPAIW 196
+ + + S ++ +IR S Q +I+TL + + +LP +
Sbjct: 574 LFPMSDKSKAGRGGGAVARGGGSSANVRSIRTSGGDQGEWTKLINTL---KDKALLPVVV 630
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-G 251
F F++R C+ + L +L E SE+ L L+ + RE P + K +LK G
Sbjct: 631 FAFSKRLCEESASKLAKLDLSTPSERSEIHLFLETSVQRLQGSDRELPQVLTMKEMLKRG 690
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH G LPI K +E LF RGLVKV+F+TET A G+NMPART V + + K
Sbjct: 691 IGVHHGGLLPIIKEMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDGKNFRD 750
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMV 370
L E QMAGRAGRRG+D+ G V++ + + AG L SQF +Y M+
Sbjct: 751 LVPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEATSLRTMLAGKATSLSSQFRLTYNMM 810
Query: 371 LNLL 374
LNLL
Sbjct: 811 LNLL 814
>gi|308799155|ref|XP_003074358.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri]
gi|116000529|emb|CAL50209.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri]
Length = 1701
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 186/384 (48%), Gaps = 40/384 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 794 DVEWVIFDEVHYVNDAERGVVWEEVIIMLPAHVGLILLSATVPNVFEFADWVGRTKRKKI 853
Query: 83 LITSSR-RPVPLTW--YFSTKT-----------ALLP----LLDE--KGKHMNRKLSLNY 122
+TS++ RPVPL YF A LP + E K K + K +
Sbjct: 854 FVTSTKKRPVPLEHCIYFGGDKEKDFYKVGEHEAFLPSGYKIASEAFKKKQLGTKAATGT 913
Query: 123 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 182
+ + + GG + + + + S + NA R + ++
Sbjct: 914 PANAQAAKQVAGRGGRGVTQPGRGGRAGGRSGTPNVSAGRGSSSGPNAGRDKNM--WVEL 971
Query: 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDA- 239
+ +L RD+LP + F F+++ CD V L +L E E+ + +R R+ PD
Sbjct: 972 IRNLERRDLLPMVIFAFSKKRCDTLVDSLTSMDLTSSSEKHEIHIFCERALSRLSAPDRK 1031
Query: 240 ------VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
VRE L +G+ HHAG LPI K +E LF RGL+KV++ TET A G+N PA
Sbjct: 1032 LPQVLRVREL----LRRGLGVHHAGLLPIVKEIVEMLFCRGLLKVLYCTETFAMGVNAPA 1087
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCK 350
R SL K L + E QMAGRAGRRG+D G V+L P E E +
Sbjct: 1088 RCVCFQSLRKHDGQDFRGLLTGEYTQMAGRAGRRGLDTVGTVILAAWDNFPQE--LELRQ 1145
Query: 351 LLFAGVEPLVSQFTASYGMVLNLL 374
LL L SQF +YGM+LNL+
Sbjct: 1146 LLSGQATKLQSQFRLTYGMILNLM 1169
>gi|452822286|gb|EME29307.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1249
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 188/362 (51%), Gaps = 48/362 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKT 81
D++ ++ DEVHY++D RG VWEE+II P +++I LSATV NA + A W+G I K
Sbjct: 458 DIEFVIFDEVHYINDEERGVVWEEVIIMLPSYIKLIMLSATVPNAMDFAKWVGAIRKSKV 517
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++ + RPVPL + L L+ +GK M TS K K+
Sbjct: 518 FVVGTHLRPVPLQHCIFFRKHLYTLVTAEGKFM------------TSVYKQLKELA---- 561
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
K+ + S++I TS G H + +++L +++PA+ F F +
Sbjct: 562 ---KYKMIPSSDIRTS-GAHPWR----------------ELVYYLNESNLVPAVIFCFAK 601
Query: 202 RGCDAAVQYLEDCNL-LDECE----MSEVELALKRFRI---LYPDAVREPAIKGLLKGVA 253
+ CD L + +L +D E +S ++ ++ R + + P R + L +G+
Sbjct: 602 KRCDELANLLSNVDLTIDSSEKFHIISFIDKSISRLQAEDRIIPQIERLREM--LSRGIG 659
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HHAG +P+ K +E LFQ+G V+V+FATET A G+NMPA+T + SS+ K +
Sbjct: 660 IHHAGIIPLMKEVVEILFQKGFVRVLFATETFAMGVNMPAKTVIFSSIRKHDGRKFRWMQ 719
Query: 314 SNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E QMAGRAGRRGID+ G V+L ++ K++ L+SQF +Y M+LN
Sbjct: 720 PGEYIQMAGRAGRRGIDSVGTVLLFLEEDLPEMNILRKVMIGQPVNLLSQFRLTYNMILN 779
Query: 373 LL 374
LL
Sbjct: 780 LL 781
>gi|342887095|gb|EGU86725.1| hypothetical protein FOXB_02734 [Fusarium oxysporum Fo5176]
Length = 1275
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 186/395 (47%), Gaps = 45/395 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 407 DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTKQKDI 466
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKPYKD----- 135
+I++ +RPVPL Y + ++D + K + + + + + KP +
Sbjct: 467 YVISTPKRPVPLEHYLWAGKNIHKIVDSEKKFIEKGWKDAHFAIQGKDKPKPAETTVATR 526
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI-----RRSQVPQVI---------- 180
GG+ R N R G Q + R S P +
Sbjct: 527 GGNPRGNQRGGTQRGGPQRGGRGGGQQQRGGNQQRGRGGPPRASHAPGHMGRGGRAGGFT 586
Query: 181 -----DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL- 229
LW +L+ +LPA F+F+++ C+ L + + E S + + +
Sbjct: 587 SVAQDKNLWVHLVQYLKKSTLLPACIFVFSKKRCEENADALSNQDFCTAAEKSHIHMIIE 646
Query: 230 KRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
K L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FATET
Sbjct: 647 KSVARLKPDDRQLPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETF 706
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
A G+N+P RT V S K L E QMAGRAGRRG+D G V++V P G
Sbjct: 707 AMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGL 764
Query: 346 EECC------KLLFAGVEPLVSQFTASYGMVLNLL 374
++ ++ L SQF +Y M+LNLL
Sbjct: 765 DDAPPVADLRNMILGEPSKLRSQFRLTYNMILNLL 799
>gi|123439993|ref|XP_001310762.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121892545|gb|EAX97832.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 965
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 181/360 (50%), Gaps = 29/360 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V+ + LSAT+ NA E + WI H + ++
Sbjct: 173 VVYDEVHYMKDRSRGVVWEESIIMLPDDVRFVFLSATIPNAREFSEWIATTHKQVCHVVY 232
Query: 86 SSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RRPVPL +Y S P + + +G+ +++ +L + ++ G + ++S
Sbjct: 233 TERRPVPLHFYLSPLGQPKPYMVRNAEGEINDQQFALACASVKSNAGASKTFGSVQVKSS 292
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
S + GQH ++I+ L++ ++ P I F+F+R+
Sbjct: 293 ETTKSKVSKK---ALGQHTC--------------KIIENLYN---SNLYPMIVFVFSRKE 332
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE--PAIKGLLK----GVAAHHA 257
CD + L + L E V + P+ P IK + + G+ HH
Sbjct: 333 CDNIHESLGERTFLKPEEKYYVTEVFQNAIQRIPNEADRNLPQIKHMKRLVERGIGVHHG 392
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G +PI K +E LFQ L+KV+FATET + G+NMPA+T V +SL K + + ++E
Sbjct: 393 GLMPILKEVVELLFQYHLIKVLFATETFSMGLNMPAKTVVFNSLQKFDGNELRTIHTSEF 452
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRR D G VV+ + L+ +G +PL S+F +Y M+LN L A
Sbjct: 453 IQMAGRAGRRNKDQFGAVVINYGGEPSPADLKALMTSGAQPLNSEFRVTYNMILNSLTSA 512
>gi|346319011|gb|EGX88613.1| DEAD/DEAH box RNA helicase Ski2, putative [Cordyceps militaris
CM01]
Length = 1207
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 176/362 (48%), Gaps = 41/362 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ + +I LSATV N E A W+G+ K
Sbjct: 401 DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHISLILLSATVPNTHEFASWVGRTKQKDI 460
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++++RPVPL Y + ++D K + K +KD
Sbjct: 461 YVISTAKRPVPLEHYVWAGKDIHKIVDSDKKFIE---------------KGWKDA----- 500
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-IDTLWHLRSRDMLPAIWFIFN 200
HA S + + A R +Q + + + +L+ +LPA F+F+
Sbjct: 501 ----HATFQSKD-------KPKGAETTVATRGAQDKNLWVHLVQYLKRNTLLPACIFVFS 549
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI----KGLLKGVAAH 255
++ C+ L + + E S + + + K L P+ P I + L +G+A H
Sbjct: 550 KKRCEENADALSNQDFCTASEKSHIHMIIEKSIARLKPEDRLLPQIIRLRELLGRGIAVH 609
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H G LPI K +E LF LVKV+FATET A G+N+P RT V S K L
Sbjct: 610 HGGLLPIVKELVEILFAETLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPG 669
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLN 372
E QMAGRAGRRG+D G V++V + A L + L SQF +Y M+LN
Sbjct: 670 EYTQMAGRAGRRGLDKVGSVIIVPPGGDDAPPVTDLRNMILGEPSKLRSQFRLTYNMILN 729
Query: 373 LL 374
LL
Sbjct: 730 LL 731
>gi|326509011|dbj|BAJ86898.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 995
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 187/396 (47%), Gaps = 45/396 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 187 VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVY 246
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE GK + Q S + + P +R N
Sbjct: 247 TDYRPTPLQHYVFPAGGDGLYLVVDENGKFRE-----DSFQKSLNVLAPASGNDKKRENG 301
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ K ++A + ++ + + + R P I F F++R
Sbjct: 302 KRQ------------------KGVVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRE 343
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L + E +E +L D + P + +L +G+ HH+G
Sbjct: 344 CEFLAMQMAKMDLNGDDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSG 403
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 404 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYI 463
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QM+GRAGRRGID RG +L+ +L G + L S F SY M+LN L
Sbjct: 464 QMSGRAGRRGIDQRGVCILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLR--- 520
Query: 379 VMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 407
S + D K L QA R+L + K V +
Sbjct: 521 ----SEDGDPEKLLRHSFYQFQADRALPDLEKQVRE 552
>gi|448107036|ref|XP_004200892.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|448110044|ref|XP_004201523.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|359382314|emb|CCE81151.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|359383079|emb|CCE80386.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
Length = 1070
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 176/356 (49%), Gaps = 30/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 259 VIFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHKQPCHVVY 318
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG +S + SR +
Sbjct: 319 TDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASISDNMGDDPSSADSRGKKG 378
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ N + +S + +++ ++ R P I F F++R
Sbjct: 379 QTFKGGNKDG-------------------KSDIYKIVKMIYMKRYN---PVIVFSFSKRD 416
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+A + + ++ E + L PDA +E P IK +L +G+ HH+G
Sbjct: 417 CEALALKMSKLDFNNDDEREALTKVFNNAINLLPDADKELPQIKNILPLLRRGIGIHHSG 476
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 477 LLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYI 536
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 537 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 592
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 745 RALDINTQ--VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK 802
R L TQ +I G A I +EL L ++ N DL P Q AA+C+ V +
Sbjct: 887 RRLGFTTQEDIIELKGRVACEISTGDELLLTELIFNGTFSDLTPEQCAALCSCFVFQERA 946
Query: 803 VRLWKNNSSIYEPSTTVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWAS 861
+ K + EP ++ ++ + + R +E+ EK VE + + AW+
Sbjct: 947 KEVPKLKPELAEPLKSMQDMATRIAKISRECKIEMVEKEYVE---SFRPELMEVTYAWSK 1003
Query: 862 GLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
G ++ ++ + +G L R+ +R ++L Q+
Sbjct: 1004 GASFTQICKMTDVYEGSLIRMFKRLEEMLRQM 1035
>gi|380494794|emb|CCF32889.1| DSHCT domain-containing protein [Colletotrichum higginsianum]
Length = 1282
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 189/391 (48%), Gaps = 43/391 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 420 DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKQKDI 479
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKL-SLNYLQLSTSEVKPY 133
+I++ +RP+PL Y + ++D EKG K N+ + + +++ S P
Sbjct: 480 YVISTPKRPIPLEHYLWAGKNIHKIVDSDKKFIEKGWKEANQAIQGKDKMKIPESSNAPR 539
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI------------- 180
GG +R + + G + A R S P +
Sbjct: 540 --GGGGQRGAPRGGIQRGGQRGGQRGGGSQQRGRGGAPRASHNPGHMGRIGRQGGFTSAA 597
Query: 181 --DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRF 232
LW L+ ++LP+ F+F+++ C+ L + + E S + + + K
Sbjct: 598 QDKNLWVHLVQFLKKDNLLPSCIFVFSKKRCEENADALSNQDFCTANEKSAIHMTIEKSI 657
Query: 233 RILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 288
L P+ P I + L +G+A HH G LPI K +E LF + LVKV+FATET A G
Sbjct: 658 ARLKPEDRTLPQIIRLRELLSRGIAVHHGGLLPIVKEIVEILFAQTLVKVLFATETFAMG 717
Query: 289 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE-- 346
+N+P RT V S K L E QMAGRAGRRG+D G V++V P G E
Sbjct: 718 LNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAP 775
Query: 347 ---ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ K++ L SQF +Y M+LNLL
Sbjct: 776 PVADLQKMILGEPSKLRSQFRLTYNMILNLL 806
>gi|324502364|gb|ADY41041.1| Superkiller viralicidic activity 2-like protein 2 [Ascaris suum]
Length = 866
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 173/356 (48%), Gaps = 37/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H + ++
Sbjct: 73 VIFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFADWVVFLHKQPVHVVC 132
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L +++ +GK R +
Sbjct: 133 TDYRPTPLQHFVYPAGGAGLYEVVNVQGKF--------------------------REDK 166
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K A ++ S+V ++I T ++ RDM+P I F F+R+
Sbjct: 167 FKEAMSVLRSVGDEGRGGIRRGKRGGTSGASEVMKIIRT---IKERDMVPCIIFSFSRKE 223
Query: 204 CDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHHAG 258
C+A L+D + D+ + E+ +L + + P I LL+G+ HH+G
Sbjct: 224 CEAYATQLKDVDFNDDKAKKMIKEIYTNAISLLSDEDRKLPQIGQVLPYLLRGIGIHHSG 283
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LF GL+ +FATET A G+NMPART + +S K +TS E
Sbjct: 284 LLPIVKELIEILFGEGLITTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEYI 343
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D RG V+L+ G + +++ +PL SQF +Y MVLNLL
Sbjct: 344 QMSGRAGRRGKDERGLVILMVDQQMGQDVAKQIIKGAADPLNSQFRLTYNMVLNLL 399
>gi|124506747|ref|XP_001351971.1| helicase with Zn-finger motif, putative [Plasmodium falciparum 3D7]
gi|23504999|emb|CAD51782.1| helicase with Zn-finger motif, putative [Plasmodium falciparum 3D7]
Length = 1373
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/430 (30%), Positives = 203/430 (47%), Gaps = 68/430 (15%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
++ ++ DEVHY++D RG +WEE II P VQI+ LSATV N E A W+G K
Sbjct: 407 NIHCVIFDEVHYVNDEDRGVIWEESIIMLPHHVQILLLSATVPNYLEFADWVGFTKQKEV 466
Query: 83 L-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-----G 136
+ I++ +RPVPL Y ++ ++DEK K + Y+++ + K+
Sbjct: 467 ISISTKKRPVPLLHYIYVYDSVYLVMDEKNKFYSSAFKEIYVKIREKQEANNKNTKQITS 526
Query: 137 GSRRRNSRKHADMN----SNNIVTS-----------------------FGQHQLSKN--- 166
GS +S + N N +T+ G ++ K
Sbjct: 527 GSNNTSSNLKKNNNYYDSKNKYLTTTNNKENDNTQNNINNNNNNNNNVIGYYEYCKQKRK 586
Query: 167 ----SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 222
+ A ++++ ++ + L + LP + F F+R C+ + + N LD +
Sbjct: 587 QKLFANEASMKTEIQKLQTLIKKLDQDNKLPVVLFCFSRIKCETYAKCMPHLNFLDTNKK 646
Query: 223 SEVELALKRFRILYPDAVRE----PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVK 277
S+V L +K P RE ++ LL KG+ HH+G LPI K +E LF +GL+K
Sbjct: 647 SKVHLFIKESISKLPKQDRELNQIQSLSKLLEKGIGVHHSGLLPILKEIVEILFSKGLIK 706
Query: 278 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
V+FATET A GINMP ++ V +S+ K + LTS+E QM+GRAGRR D G+V +
Sbjct: 707 VLFATETFAMGINMPTKSVVFTSIYKHDHLRKRILTSSEYTQMSGRAGRRSSDKYGYVYI 766
Query: 338 VQTPYEGAEECC----------KLLFAGVEPLVSQFTASYGMVLNLLAGAKV----MHLS 383
CC +++ L S+F +Y M+L LL ++ M S
Sbjct: 767 C---------CCDNIPDQVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQINIEKMLFS 817
Query: 384 NESDDMKALQ 393
+ + +ALQ
Sbjct: 818 SFLESCRALQ 827
>gi|402084399|gb|EJT79417.1| FRQ-interacting RNA helicase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1113
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 184/356 (51%), Gaps = 28/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 294 VIFDEIHYMRDAIRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 353
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DE G + R+ + N S + +D S+ N
Sbjct: 354 TDFRPTPLQNYFFPAGGEGIYLVVDENG--VFREKNFN------SAIAAIEDNKSKDAN- 404
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ N T G+++ + +S + +++ + + P I F F++R
Sbjct: 405 ------DPNARQTGKGKNKKPRKDTGPDAKSDITKIVKMIM---KKAFHPVIVFNFSKRE 455
Query: 204 CDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + N E E V+ + L + P I+ L+ KG+ HH G
Sbjct: 456 CENLALKVSSMNFNHETEQQLVDDIFHNAIMSLSEEDQNLPQIQHLIPLLKKGIGVHHGG 515
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPART V S ++K LTS+E
Sbjct: 516 LLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFSQVTKFDGVKERPLTSSEYI 575
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 373
QMAGRAGRRG+D+RG +V++ + E K + AG + L S F Y M+LNL
Sbjct: 576 QMAGRAGRRGLDDRG-IVIMMIGEQLEPEVAKGIVAGQQDRLNSAFHLGYNMILNL 630
>gi|425781760|gb|EKV19706.1| ATP dependent RNA helicase (Dob1), putative [Penicillium digitatum
PHI26]
gi|425782939|gb|EKV20818.1| ATP dependent RNA helicase (Dob1), putative [Penicillium digitatum
Pd1]
Length = 1081
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/361 (31%), Positives = 187/361 (51%), Gaps = 29/361 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DE+HY+ D++RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 265 EVQWVVFDEIHYMRDLNRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWIVKMHNQPC 324
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ ++ RP PL YF + + ++DEKG ++ + D ++
Sbjct: 325 HVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFREENFQKAMSAIADKKGDDPADALAK 384
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ K +N G ++ + +R + ++ P I F F
Sbjct: 385 RKGKGKDKQINK-------GGNKGPSDIFKIVR------------MIMLKNYNPVIVFSF 425
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 254
++R C+A + D+ E + V + +L P+ + P I+ +L +G+
Sbjct: 426 SKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQQGIGV 485
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + + +T
Sbjct: 486 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQRWVTP 545
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 373
+E QM+GRAGRRG+D+RG +V++ E K + G + L S F Y M+LNL
Sbjct: 546 SEFIQMSGRAGRRGLDDRG-IVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 604
Query: 374 L 374
+
Sbjct: 605 M 605
>gi|290984980|ref|XP_002675204.1| predicted protein [Naegleria gruberi]
gi|284088799|gb|EFC42460.1| predicted protein [Naegleria gruberi]
Length = 843
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 51/363 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II PK + +I LSAT+ N + A W+G+ K
Sbjct: 114 DVEWVIFDEVHYVNDPERGVVWEEVIIMLPKHINLILLSATIPNTYDFADWVGRTKKKKI 173
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I + +RPVPL + + ++D K + G R
Sbjct: 174 HVIQTFKRPVPLEHHLYYNGNIYKIVDSNSKFLA--------------------AGYRSA 213
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
S + N S +++ ++I+TL +++LPA+ F+F+R
Sbjct: 214 LSAEEEKEEKNK-------------SRGGFKKTPYSKLIETL---NKKNLLPAVTFVFSR 257
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLK-GVA 253
+ C+ L++ +L + E +E+ LK P VR I LLK G+
Sbjct: 258 KQCEDIAISLQNTDLNEAGEKNEIHRFINQSVSRLKGSDKELPQIVR---ISDLLKRGIG 314
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K +E LF +GL+KV+FATET A G+N P +T V ++L K + L
Sbjct: 315 IHHSGLLPIVKEIVEILFSKGLIKVLFATETFAMGVNSPTKTVVFNTLWKFDGRDKRDLL 374
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC--KLLFAGVEPLVSQFTASYGMVL 371
S E QM+GRAGRRG+D G+V+ + E EE +L+ L S+F SY M+L
Sbjct: 375 SGEYIQMSGRAGRRGLDTVGNVI-INCASEIPEEPLLQRLILGKATHLESKFKLSYNMIL 433
Query: 372 NLL 374
NL+
Sbjct: 434 NLM 436
>gi|241745437|ref|XP_002414260.1| helicase, putative [Ixodes scapularis]
gi|215508114|gb|EEC17568.1| helicase, putative [Ixodes scapularis]
Length = 819
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 185/375 (49%), Gaps = 54/375 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
D++ ++ DE HY++D RG VWEE++I P+ V ++ LSATV NA LA WIG+I +
Sbjct: 14 DLEWVIFDECHYINDPDRGVVWEEVLIMLPRHVGLVLLSATVPNALNLANWIGRIKERML 73
Query: 82 ELITSSRRPVPLT--WYFSTKTALLPLLDEKGKHMNRK-----LSLNYLQLSTSEVKPYK 134
+I +++RPVPL YF+ +T L+ LD K + L Y+ P+
Sbjct: 74 YVICTTKRPVPLEHHLYFNQETFLI--LDASNKFQTSRCGCPDFKLFYITHVMLYPHPF- 130
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 194
N H+ V+SF Q RS+ +I HLR D LP
Sbjct: 131 -------NCVMHS-------VSSFNFEQ---------DRSRYQGLIQ---HLRKADRLPV 164
Query: 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-------RILYPDAVREPAIKG 247
I F +R+ CD L +L E S A++RF R+ D R P ++
Sbjct: 165 ICFTLSRKRCDENALSLRSLDLTTAEEKS----AIRRFIQSTVTSRLGRADQ-RLPQLRT 219
Query: 248 LLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
L G HH+G LPI K +E LFQRGLVKV+FATET A G+NMPART V S+ K
Sbjct: 220 LRSLLESGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPARTVVFDSIRK 279
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQ 362
L E QMAGRAGRRG D G V ++ + + + ++ L S+
Sbjct: 280 HDGVSNRDLLPAEYIQMAGRAGRRGKDKTGTVLIMCKAEVPESSQLQAMMLGRPTELQSR 339
Query: 363 FTASYGMVLNLLAGA 377
F +Y M+LNL A A
Sbjct: 340 FRITYSMILNLKAQA 354
>gi|195331409|ref|XP_002032395.1| GM23539 [Drosophila sechellia]
gi|194121338|gb|EDW43381.1| GM23539 [Drosophila sechellia]
Length = 1197
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 182/365 (49%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + + L+D +GK YLQ + Y+
Sbjct: 428 YVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGK---------YLQSN------YEK 472
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R++ + A + +N +NA + + I + LR +M+P +
Sbjct: 473 AVERKKEMQGKAKGGA----------GGPRNHLNA--KQEQNTWIGLIDFLRRGNMMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLILKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKYDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|238883476|gb|EEQ47114.1| ATP-dependent RNA helicase DOB1 [Candida albicans WO-1]
Length = 1062
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 177/356 (49%), Gaps = 27/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 250 VVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVY 309
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG +S + S R N
Sbjct: 310 TDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSGRGNK 369
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + N HQ K I I + + +++ + P I F F++R
Sbjct: 370 KGKTNKGRN--------HQDGKGDIYKIVK---------MIYMKKYN--PVIVFSFSKRD 410
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + + E + + L P+A RE P IK +L +G+ HH+G
Sbjct: 411 CESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHHSG 470
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 471 LLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYI 530
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 531 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 894 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 953
Query: 818 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 872
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 954 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1006
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
+ +G + R LRR I+L+ Q+
Sbjct: 1007 DIYEGSIIRALRREIELIKQL 1027
>gi|400600826|gb|EJP68494.1| DSHCT domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1098
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 224/469 (47%), Gaps = 64/469 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 274 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 333
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEKG + + + EV+
Sbjct: 334 TDFRPTPLQNYFYPAGGSGARIVVDEKGN-----FNEDNFNIVMKEVE-----------D 377
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K AD N N T+ + A S + ++I + P I F F++R
Sbjct: 378 KKGADSNDINAKTTGKGKNKKTHKGGADEGSDMSKIIRMTIR---KSFNPVIVFNFSKRE 434
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + +L D+ E + V + + R+ P IK LL +G+ HH+G
Sbjct: 435 CENMAISISKLSLNDDSEKAMVNKVFQSAIESLSEQDRDLPQIKNLLPLLVRGIGVHHSG 494
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 495 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVQRRPLTSSEYV 554
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 555 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKQIVTGQQDRLNSAFYLGYNMILNLL---R 611
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + EL IQ+E D T
Sbjct: 612 IEAISPEF-----------------MLERCFHQFQNAASVPTLERELMAIQQERDGAT-- 652
Query: 439 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 487
+ EA K+ ++++L A + ++R ++L +S
Sbjct: 653 ------------IPDEATIKDYYQIRQQLNA---YTKDMRSVIQLPNYS 686
>gi|327349799|gb|EGE78656.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ATCC 18188]
Length = 1317
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 188/395 (47%), Gaps = 43/395 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 447 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDI 506
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-----------------------K 112
+I++ +RPVPL Y ++ ++D EKG
Sbjct: 507 YVISTPKRPVPLEHYLWADKSMHKIVDSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQS 566
Query: 113 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINA 170
+ N + + + GG++R + R A S G +++
Sbjct: 567 NTNNRGGHGDRGRGGQPQRGNQRGGAQRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGG 626
Query: 171 IRR--SQVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
R +Q + + + HLR ++LPA F+F++R C+ L + + E S + +
Sbjct: 627 GRTTVAQDRNIWVHLVQHLRKENLLPACIFVFSKRRCEENADSLSNQDFCTASEKSTIHM 686
Query: 228 AL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+ K L + P I+ L +G+ HH G LPI K +E LF + LVKV+FAT
Sbjct: 687 IIEKSLARLKTEDRGLPQIRRVRELLSRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFAT 746
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ET A G+N+P RT V S K L E QMAGRAGRRG+D G V++V +
Sbjct: 747 ETFAMGLNLPTRTVVFSGFRKHDGRSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGK 806
Query: 343 EGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 374
+ A +++ L SQF +Y M+LNLL
Sbjct: 807 DEAPPAGTLRRMILGDPTKLRSQFRLTYNMILNLL 841
>gi|17933658|ref|NP_524465.1| twister, isoform A [Drosophila melanogaster]
gi|442620708|ref|NP_001262884.1| twister, isoform B [Drosophila melanogaster]
gi|16769288|gb|AAL28863.1| LD23303p [Drosophila melanogaster]
gi|23172083|gb|AAF56187.2| twister, isoform A [Drosophila melanogaster]
gi|220947190|gb|ACL86138.1| CG10210-PA [synthetic construct]
gi|220956718|gb|ACL90902.1| tst-PA [synthetic construct]
gi|440217804|gb|AGB96264.1| twister, isoform B [Drosophila melanogaster]
Length = 1197
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + + L+D +GK YLQ
Sbjct: 428 YVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGK---------YLQ----------- 467
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M +N +NA + + I + LR +M+P +
Sbjct: 468 -GNYEKAVERKKEMQGKAKGGG----GGPRNHLNA--KQEQYTWIGLIDFLRRSNMMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|402573154|ref|YP_006622497.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254351|gb|AFQ44626.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
Length = 749
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 182/371 (49%), Gaps = 60/371 (16%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L W
Sbjct: 109 VITEDPSLEFVSHIVFDEIHWLNDEERGTVWEESIILAPPKMKILGLSATIANAKHLVDW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I H + LI R VPL +++ TK L D+ ++ RKL
Sbjct: 169 IESIRHEEVALIEEHNRVVPLEYFYYTKDTGLVDYDQLWRYYRRKLK------------- 215
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+ N FG ++ IR Q R L
Sbjct: 216 -----------------DRTNDENPFG----PTTHLDLIRTIQ-------------RHHL 241
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY------PDAVREPAIK 246
PA++F+F+RR C A++ +E N+ + + +E ++ RF L+ + R+ +K
Sbjct: 242 PALFFVFSRRQC--AIKAMELANISNYLKPAERKIVEDRFIHLFGSEFDWSSSTRQ--LK 297
Query: 247 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
L KG+A HHAG LP K +EELF L+KV++ TET + GIN P + SL+K
Sbjct: 298 RLCSKGIAYHHAGLLPSQKVIVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYD 357
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D +G+ LV Y K +EPL SQF
Sbjct: 358 GRNFRPLANHEFFQMSGRAGRRGLDEKGYSFALVDLGYMEKSPPPKFQLNRLEPLTSQFR 417
Query: 365 ASYGMVLNLLA 375
+Y VLNL A
Sbjct: 418 LTYNTVLNLTA 428
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813
+ P G A+ I + EL + ++ + I L QL A+ +S+ E K +++ +S++
Sbjct: 594 LLPRGTCASRIYVQ-ELLVTELIYSDIFTQLDDDQLNALLSSVDFEARKNDMFQK-TSVF 651
Query: 814 EPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+ N + + E+ +Q G + D + +G+ AW+ G T+ E+ C
Sbjct: 652 DA-----NPVKEIAEY------IQSICGQD-SIRFDPRVAGITHAWSQGSTFIEVQAMCN 699
Query: 874 LDDGDLARLLRRTIDLLAQI 893
LD+GD+ + RRTIDL+ Q+
Sbjct: 700 LDEGDIISVFRRTIDLMRQM 719
>gi|62088790|dbj|BAD92842.1| DJ34F7.7 (Superkiller viralicidic activity 2 -like variant [Homo
sapiens]
Length = 607
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 171/348 (49%), Gaps = 38/348 (10%)
Query: 40 RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF- 97
RG VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 9 RGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLF 68
Query: 98 -----STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 152
T+ L LLD +G + Y +++ KHA
Sbjct: 69 TGNSSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ---- 110
Query: 153 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 212
+FG Q + A R + L LR+R LP + F F+R CD L
Sbjct: 111 ----TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLT 163
Query: 213 DCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFI 267
+L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +
Sbjct: 164 SLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIV 223
Query: 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327
E LF RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRR
Sbjct: 224 EMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRR 283
Query: 328 GIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
G+D G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 284 GLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 331
>gi|378729065|gb|EHY55524.1| hypothetical protein HMPREF1120_03657 [Exophiala dermatitidis
NIH/UT8656]
Length = 1075
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 179/356 (50%), Gaps = 27/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HYL D +RG VWEE II P +V+ + LSAT+ NA + A WI + H + ++
Sbjct: 265 VIFDEIHYLRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQPCHVVY 324
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF A + ++DEKG ++ + + +RR+
Sbjct: 325 TDFRPTPLQHYFFPAGADGIHLIVDEKGVFREDNFQKAMSTIAAKQGDDPANAMARRKGR 384
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K +N G ++ + +R + +++ P I F F++R
Sbjct: 385 GKDKKLNK-------GGNKGPSDIYKIVR------------MIMTKNYNPVIVFSFSKRD 425
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A + + DE E + V +L P+ P I+ LL +G+ HH+G
Sbjct: 426 CEAYAIQMSTMSFNDESEKAMVSKVFDSALEMLSPEDKNLPQIQHLLPLLRRGIGIHHSG 485
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T +E
Sbjct: 486 LLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGISQRWVTPSEFI 545
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D RG V+++ +++ + L S F Y M+LNLL
Sbjct: 546 QMSGRAGRRGLDERGIVIMMIDEQMEPTVAKEIVRGEQDKLNSAFYLGYNMILNLL 601
>gi|13446608|emb|CAC35050.1| putative helicase Ski2 [Drosophila melanogaster]
Length = 1197
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + + L+D +GK YLQ
Sbjct: 428 YVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGK---------YLQ----------- 467
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M +N +NA + + I + LR +M+P +
Sbjct: 468 -GNYEKAVERKKEMQGKAKGGG----GGPRNHLNA--KQEQYTWIGLIDFLRRSNMMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|195573242|ref|XP_002104604.1| GD18353 [Drosophila simulans]
gi|194200531|gb|EDX14107.1| GD18353 [Drosophila simulans]
Length = 1197
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 181/365 (49%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + + L+D +GK YLQ + Y+
Sbjct: 428 YVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGK---------YLQSN------YEK 472
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R++ + A +N +NA + + I + LR +M+P +
Sbjct: 473 AVERKKEMQGKAKGGG----------GGPRNHLNA--KQEQNTWIGLIDFLRRGNMMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLILKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKYDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|239615085|gb|EEQ92072.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ER-3]
Length = 1295
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 188/395 (47%), Gaps = 43/395 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 447 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDI 506
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-----------------------K 112
+I++ +RPVPL Y ++ ++D EKG
Sbjct: 507 YVISTPKRPVPLEHYLWADKSMHKIVDSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQS 566
Query: 113 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINA 170
+ N + + + GG++R + R A S G +++
Sbjct: 567 NTNNRGGHGDRGRGGQPQRGNQRGGAQRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGG 626
Query: 171 IRR--SQVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
R +Q + + + HLR ++LPA F+F++R C+ L + + E S + +
Sbjct: 627 GRTTVAQDRNIWVHLVQHLRKENLLPACIFVFSKRRCEENADSLSNQDFCTASEKSTIHM 686
Query: 228 AL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+ K L + P I+ L +G+ HH G LPI K +E LF + LVKV+FAT
Sbjct: 687 IIEKSLARLKTEDRGLPQIRRVRELLSRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFAT 746
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ET A G+N+P RT V S K L E QMAGRAGRRG+D G V++V +
Sbjct: 747 ETFAMGLNLPTRTVVFSGFRKHDGRSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGK 806
Query: 343 EGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 374
+ A +++ L SQF +Y M+LNLL
Sbjct: 807 DEAPPAGTLRRMILGDPTKLRSQFRLTYNMILNLL 841
>gi|348669763|gb|EGZ09585.1| hypothetical protein PHYSODRAFT_318253 [Phytophthora sojae]
Length = 1421
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 184/365 (50%), Gaps = 33/365 (9%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DE+HY++D RG VWEE+II P+ + ++ LSAT N E + WIG+ K
Sbjct: 515 DIEWVIFDEIHYINDSERGVVWEEVIIMLPEHIGMVFLSATTPNHLEFSDWIGRTKKQKI 574
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + L L D ++ N + +++ P D
Sbjct: 575 HVISTYKRPVPLQHFLYAGKELFKLYDATTGYLP-----NAHGAAKAKIFPASDKSKAGG 629
Query: 142 NSRKH------ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+ + N+ + TS G + + ++I+TL + + +LP +
Sbjct: 630 RGGRAVARGGGSSANARTLRTSGGD------------QGEWTKLINTL---KDKSLLPVV 674
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK- 250
F F++R C+ + L +L E SE+ L L+ + RE P + K +LK
Sbjct: 675 VFAFSKRLCEESANKLAKLDLSTPSERSEIHLFLETSVQRLQGSDRELPQVLMMKEMLKR 734
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH G LPI K +E LF RGLVKV+F+TET A G+NMPART V + + K
Sbjct: 735 GIGVHHGGLLPIIKEMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDGKNFR 794
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGM 369
L E QMAGRAGRRG+D+ G V++ + + AG L SQF +Y M
Sbjct: 795 DLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLRTMLAGKATSLSSQFRLTYNM 854
Query: 370 VLNLL 374
+LNLL
Sbjct: 855 ILNLL 859
>gi|357507885|ref|XP_003624231.1| Helicase, putative [Medicago truncatula]
gi|355499246|gb|AES80449.1| Helicase, putative [Medicago truncatula]
Length = 983
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 176/354 (49%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 170 IIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY 229
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKGK + Q + + + P DG ++ N+
Sbjct: 230 TDYRPTPLQHYIFPSGSEGLYLVVDEKGKFRE-----DSFQKALNALIPAADGDRKKENA 284
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + G+ A S + +++ + R P I F F++R
Sbjct: 285 KWQKGL-------VLGK---------AAEESDIFKMVKMIIQ---RQYDPVILFSFSKRE 325
Query: 204 CDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L + E +E + +L D + P + +L +G+ HH+G
Sbjct: 326 CEFLAMQMAKMDLNGDIEKDNIEKIFWCAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 385
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K +TS E
Sbjct: 386 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYI 445
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID+RG +L+ ++ + L S F SY M+LN
Sbjct: 446 QMSGRAGRRGIDDRGVCILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILN 499
>gi|320169748|gb|EFW46647.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1332
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 193/379 (50%), Gaps = 34/379 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P V II LSATV N E AGW+G+ K
Sbjct: 476 DVEWVIFDEVHYVNDVDRGVVWEEVIIMLPPHVNIIMLSATVPNTMEFAGWVGRTKRKRI 535
Query: 82 ELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNR--KLSLNYLQLSTSEVKPY 133
+I++ +RPVPL + STKT+ L ++D + K ++ + ++ +
Sbjct: 536 HVISTLKRPVPLEHFLYTGNSTKTSNELFKIVDANKNFLQAGYKQAVETIAQRKAQAQDN 595
Query: 134 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRS 188
+ GG ++ N+ R + PQ +W L+
Sbjct: 596 QQGGGSGGRGGGARGGAAHRGGGGGRGGGGGHFGGNSYRGN--PQQDRNIWMSLIEMLQK 653
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKRFR---ILYPDAVR 241
+ +LP + F F+++ C++ + +L E S +E ++ R R P +R
Sbjct: 654 KSLLPMVAFTFSKKRCESNADGILTLDLTTGDEKSAIHVFIENSVSRLRGNDRNLPQVLR 713
Query: 242 EPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
++ +L +GVA HH G LPI K +E LFQRGLVKV++ATET A G+NMP RT V S
Sbjct: 714 ---MRDMLRRGVAVHHGGLLPIIKEMVELLFQRGLVKVLYATETFAMGVNMPTRTVVFDS 770
Query: 301 LSKRTA-SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAG 355
K +G L E QMAGRAGRRG+D+ G V+L+ + P G +L
Sbjct: 771 TRKPDGQAGFRDLLPGEYVQMAGRAGRRGLDDTGTVILLVKGDEVPDAGG--LINMLLGK 828
Query: 356 VEPLVSQFTASYGMVLNLL 374
L S+F +Y M+LNLL
Sbjct: 829 ATTLESRFRLTYNMILNLL 847
>gi|261192172|ref|XP_002622493.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
gi|239589368|gb|EEQ72011.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
Length = 1298
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 188/395 (47%), Gaps = 43/395 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 447 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDI 506
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD------EKG-----------------------K 112
+I++ +RPVPL Y ++ ++D EKG
Sbjct: 507 YVISTPKRPVPLEHYLWADKSMHKIVDSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQS 566
Query: 113 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINA 170
+ N + + + GG++R + R A S G +++
Sbjct: 567 NTNNRGGHGDRGRGGQPQRGNQRGGAQRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGG 626
Query: 171 IRR--SQVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
R +Q + + + HLR ++LPA F+F++R C+ L + + E S + +
Sbjct: 627 GRTTVAQDRNIWVHLVQHLRKENLLPACIFVFSKRRCEENADSLSNQDFCTASEKSTIHM 686
Query: 228 AL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 282
+ K L + P I+ L +G+ HH G LPI K +E LF + LVKV+FAT
Sbjct: 687 IIEKSLARLKTEDRGLPQIRRVRELLSRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFAT 746
Query: 283 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342
ET A G+N+P RT V S K L E QMAGRAGRRG+D G V++V +
Sbjct: 747 ETFAMGLNLPTRTVVFSGFRKHDGRSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGK 806
Query: 343 EGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 374
+ A +++ L SQF +Y M+LNLL
Sbjct: 807 DEAPPAGTLRRMILGDPTKLRSQFRLTYNMILNLL 841
>gi|68488964|ref|XP_711675.1| hypothetical protein CaO19.1335 [Candida albicans SC5314]
gi|68489001|ref|XP_711657.1| hypothetical protein CaO19.8915 [Candida albicans SC5314]
gi|77023008|ref|XP_888948.1| hypothetical protein CaO19_1335 [Candida albicans SC5314]
gi|46432976|gb|EAK92435.1| hypothetical protein CaO19.8915 [Candida albicans SC5314]
gi|46432995|gb|EAK92453.1| hypothetical protein CaO19.1335 [Candida albicans SC5314]
gi|76573761|dbj|BAE44845.1| hypothetical protein [Candida albicans]
Length = 1106
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 177/356 (49%), Gaps = 27/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 294 VVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVY 353
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG +S + S R N
Sbjct: 354 TDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSGRGNK 413
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + N HQ K I I + + +++ + P I F F++R
Sbjct: 414 KGKTNKGRN--------HQDGKGDIYKIVK---------MIYMKKYN--PVIVFSFSKRD 454
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + + E + + L P+A RE P IK +L +G+ HH+G
Sbjct: 455 CESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHHSG 514
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 515 LLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYI 574
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 575 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 630
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 938 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 997
Query: 818 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 872
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 998 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1050
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
+ +G + R LRR I+L+ Q+
Sbjct: 1051 DIYEGSIIRALRREIELIKQL 1071
>gi|422293920|gb|EKU21220.1| type iii restriction res subunit [Nannochloropsis gaditana CCMP526]
Length = 369
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 149/257 (57%), Gaps = 31/257 (12%)
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL----EDCNLLDECEMSEVELALKRFRILY 236
D + L RD+LPAI FIF+R GCD A + LL E +++ L FR+
Sbjct: 25 DLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLAN 84
Query: 237 PDA-VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
P + + ++ LL G+A HHAG LP++K+ +EELF L++VVFATETLAAG+NMPAR
Sbjct: 85 PQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARA 144
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355
V+S+LSK+ I L ++L QMAGRAGRRG D GHVVL+++ E A + LL A
Sbjct: 145 TVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAP 204
Query: 356 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 415
V+ + S F +SY MV+N+L R LE + LVE+SFGNY+ +
Sbjct: 205 VDSIRSHFRSSYAMVVNIL-------------------RTRDLESCKLLVERSFGNYLKA 245
Query: 416 -------NVMLAAKDEL 425
V +A +DEL
Sbjct: 246 YSLGEEQEVDIANRDEL 262
>gi|399215847|emb|CCF72535.1| unnamed protein product [Babesia microti strain RI]
Length = 1024
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 191/367 (52%), Gaps = 68/367 (18%)
Query: 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ- 76
+S + ++DV++ DEVHY+SD+SRG VWEE+II PK ++++ LSATV N E + WIG+
Sbjct: 266 DSLIGELDVVIFDEVHYISDLSRGVVWEEVIIMLPKVLRLLMLSATVPNYMEFSDWIGRT 325
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
+ + I + +RP PL Y H++ K N+L ++ DG
Sbjct: 326 MQREVVAIVTKKRPTPLVHYL---------------HIHSK---NFLLFNS-------DG 360
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
N N G+ Q + A+ +S L D LP I
Sbjct: 361 ------------FNQN------GEIQ----KLQALIKS-----------LEQNDKLPVIL 387
Query: 197 FIFNRRGCDAAVQYLEDCNLLD-ECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 250
F F+R C+ + + +L + E S++ L +K D R P +K ++ +
Sbjct: 388 FSFSRAKCETYAKCMPKLDLSKTQSERSKIHLFIKESLETLSDTDRNIPQLKFIISLLER 447
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GV HH+G LPI K +E LF RGLVKV+FATET A G+NMPAR+ V +S+ K
Sbjct: 448 GVGVHHSGLLPIIKEIVEILFSRGLVKVLFATETFAMGVNMPARSVVFTSIRKHDGLKNR 507
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVL--VQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
LTS+E QMAGRAGRRG+D+ G+V + V +P + ++ +L PL S+F +Y
Sbjct: 508 ILTSSEYTQMAGRAGRRGLDSVGNVFIFCVDSPPD-LQDLTMMLIEKSTPLKSRFRITYS 566
Query: 369 MVLNLLA 375
M+L +++
Sbjct: 567 MLLQVMS 573
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 730 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789
+ E + NV+ + LD + V G A I +E+ L VL IL +L P +
Sbjct: 828 AYPEMMARVNVLKQMGFLD-SENVPTIKGRVATYITTTDEITLTQVLFQNILKELDPPEC 886
Query: 790 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV-INVLDEHRSSFLELQEKHGVEIPC-- 846
AA+ ++ +S + N P+ + N N+ + HR ++ LQ G+ P
Sbjct: 887 AAILSAFISTD------RCNDEAPIPTLKLQNARDNIFEIHRKIYI-LQNSLGIHTPIED 939
Query: 847 -CLDSQFS-GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
L FS + WA G + E+M L +G++ R + R +L ++
Sbjct: 940 FDLLCNFSLQICYQWACGSPFPEIMEMTTLQEGNIVRAIIRLEELCKKV 988
>gi|367054316|ref|XP_003657536.1| hypothetical protein THITE_2123361 [Thielavia terrestris NRRL 8126]
gi|347004802|gb|AEO71200.1| hypothetical protein THITE_2123361 [Thielavia terrestris NRRL 8126]
Length = 1090
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 213/434 (49%), Gaps = 49/434 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 272 VIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 331
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEKG + ++ + + D ++++
Sbjct: 332 TDFRPTPLQNYFFPAGSNGIYLIVDEKGNFKENNFNEAMAKIESKKGSDPADWSAKQKGR 391
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K+ N G+ ++ I + + +I +H P I F F++
Sbjct: 392 GKNKKTNKG------GEAPAEQSDIAKV----IKMIIRKKFH-------PVIVFNFSKHE 434
Query: 204 CD--AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+ A + N DE M V++ L D P I +L KG+ HH+
Sbjct: 435 CEQMALNTSVMKFNAPDEEAMV-VQVFENAINQLSEDDKNLPQISNILPLLRKGIGVHHS 493
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R LTS+E
Sbjct: 494 GLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVQRRPLTSSEY 553
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D+RG V+++ + ++ + L S F Y M+LNLL
Sbjct: 554 IQMAGRAGRRGLDDRGIVIMMVDDKLEPDVARSVVVGHQDRLNSAFHLGYNMILNLL--- 610
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
++ +S E ++E+ F + ++ + + EL +Q+E D +
Sbjct: 611 RIEAISPEF-----------------MLERCFFQFQNAHGVPQLERELASLQQERDSMM- 652
Query: 438 EISDDAIDRKSRRL 451
I D++ ++ R +
Sbjct: 653 -IPDESTVKEYRTI 665
>gi|358378415|gb|EHK16097.1| hypothetical protein TRIVIDRAFT_39829 [Trichoderma virens Gv29-8]
Length = 1037
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 206/426 (48%), Gaps = 51/426 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 214 VVFDEVHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 273
Query: 86 SSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ RP PL YF K A + ++DEKG + + +EV+
Sbjct: 274 TDFRPTPLQNYFYPAGGKGARM-VVDEKGN-----FNAENFNIVMAEVE----------- 316
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+K AD N A S + ++I ++ P I F F++R
Sbjct: 317 EKKGADPADPTAKMKGKGKNKKTNKGGADEGSDINKIIRMTI---KKNYNPVIVFNFSKR 373
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 257
C+ + + N D+ E + V + + RE P I LL KGV HH+
Sbjct: 374 ECENMALKISNLNFNDDSEKAMVNKVFRSAIDSLSEQDRELPQIMNLLPLLEKGVGVHHS 433
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R +TS+E
Sbjct: 434 GLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGIKRRPITSSEY 493
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D RG V+++ E ++ + L S F Y M+LNLL
Sbjct: 494 IQMAGRAGRRGLDARGIVIMMIDDKLEPEVAKDIVTGHQDKLNSAFYLGYNMILNLL--- 550
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
++ +S E ++E+ F + + + + + +L +Q+E D LT
Sbjct: 551 RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKDLMALQQEKDALT- 592
Query: 438 EISDDA 443
I D+A
Sbjct: 593 -IPDEA 597
>gi|261332826|emb|CBH15821.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 950
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 181/363 (49%), Gaps = 28/363 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 133 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFAEWVESIHPG 192
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DE GK + + + + V G
Sbjct: 193 TKVHVIHTDYRPVPLHHYVYPCGADGIFLIVDELGKFRE-----DNFRRAMASVGAGNKG 247
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G N S S+ ++R+S P +++ + + +R+M P I
Sbjct: 248 GD-------------ANGAESTEVAAASRGKQRSMRKSTEP-IMEIIKLVMNRNMYPIIV 293
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ LL +G
Sbjct: 294 FSFAKAECERNALALSKLNFNNTEEDALVTEVFNNAMECLATEDRKLPAIEHLLPLLKRG 353
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 354 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRY 413
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVL
Sbjct: 414 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVL 473
Query: 372 NLL 374
NLL
Sbjct: 474 NLL 476
>gi|398024538|ref|XP_003865430.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322503667|emb|CBZ38753.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 954
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 175/363 (48%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 131 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVENIHPT 190
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DEKGK + +
Sbjct: 191 TKVHVIHTEYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGA 250
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
S K D N+ + H S+ I V V+D R+M P I
Sbjct: 251 AGPGNGSSK--DPRGNHKGSGGRSHGGFSQSMMEI----VKLVMD-------RNMYPVIV 297
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ L +G
Sbjct: 298 FSFAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLQPLLKRG 357
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 358 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 417
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 418 LTGGEYIQMSGRAGRRGLDRVGVVITMVDEAVEPDTLKQLTSGGADVLLSSFHLTYNMVL 477
Query: 372 NLL 374
NLL
Sbjct: 478 NLL 480
>gi|71747848|ref|XP_822979.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832647|gb|EAN78151.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 950
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 181/363 (49%), Gaps = 28/363 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 133 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFAEWVESIHPG 192
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DE GK + + + + V G
Sbjct: 193 TKVHVIHTDYRPVPLHHYVYPCGADGIFLIVDELGKFRE-----DNFRRAMASVGAGNKG 247
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
G N S S+ ++R+S P +++ + + +R+M P I
Sbjct: 248 GD-------------ANGAESTEVAAASRGKQRSMRKSTEP-IMEIIKLVMNRNMYPIIV 293
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ LL +G
Sbjct: 294 FSFAKAECERNALALSKLNFNNTEEDALVTEVFNNAMECLATEDRKLPAIEHLLPLLKRG 353
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 354 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRY 413
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVL
Sbjct: 414 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVL 473
Query: 372 NLL 374
NLL
Sbjct: 474 NLL 476
>gi|146104011|ref|XP_001469707.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134074077|emb|CAM72819.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 954
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 175/363 (48%), Gaps = 22/363 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 131 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVENIHPT 190
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DEKGK + +
Sbjct: 191 TKVHVIHTEYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGA 250
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
S K D N+ + H S+ I V V+D R+M P I
Sbjct: 251 AGPGNGSSK--DPRGNHKGSGGRSHGGFSQSMMEI----VKLVMD-------RNMYPVIV 297
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ L +G
Sbjct: 298 FSFAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLQPLLKRG 357
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 358 VGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 417
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVL
Sbjct: 418 LTGGEYIQMSGRAGRRGLDRVGVVITMVDEAVEPDTLKQLTSGGADVLLSSFHLTYNMVL 477
Query: 372 NLL 374
NLL
Sbjct: 478 NLL 480
>gi|449445443|ref|XP_004140482.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis
sativus]
Length = 994
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 172/354 (48%), Gaps = 31/354 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 181 IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQPCHIVY 240
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKG H + Q + + + P DG ++ N+
Sbjct: 241 TDYRPTPLQHYIFPSGSEGLYLVVDEKG-HFRE----DSFQKALNALVPVSDGDKKKENN 295
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K + S+ + + + + + R P I F F++R
Sbjct: 296 GKW------------------QKSLTLGKTGEDSDIFKMVKMIIQRQYDPVILFSFSKRE 337
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L + E +E +L D + P + +L +G+ HH+G
Sbjct: 338 CEFLAMQMAKLDLNGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 397
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L+S E
Sbjct: 398 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYI 457
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 458 QMSGRAGRRGIDKRGICILMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMLLN 511
>gi|344234464|gb|EGV66332.1| hypothetical protein CANTEDRAFT_100985 [Candida tenuis ATCC 10573]
Length = 1212
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 178/364 (48%), Gaps = 13/364 (3%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++DI RG VWEE+II P+ ++ I LSATV N E A W+G+ K
Sbjct: 375 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPEHIKYILLSATVPNTFEFANWVGRTKQKDI 434
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP----YKDGG 137
+I++ +RPVPL K L +D K + + L L S+ K + G
Sbjct: 435 YVISTPKRPVPLEISVWAKENLYKAIDASRKFSETEFKKHKLALEGSDKKKAPSVVEGYG 494
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
R N + G N R + +L+ +LPA+ F
Sbjct: 495 QRGGPGGSARGGNRSVARGGRGGRGGGANGRPGRDRPNKNTWSQLVSYLKKNTLLPAVIF 554
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGV 252
+F++ C+ + L + E SE+ + + R RE P I + L +G+
Sbjct: 555 VFSKVRCEEYAETLSGVDFCTAKEKSEIHMFIDRSVSRLKKEDRELPQILKIRELLGRGI 614
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HH G LPI K FIE LF + LVKV+FATET A G+N+P RT V S L K L
Sbjct: 615 AVHHGGLLPIVKEFIEILFAKTLVKVLFATETFAMGLNLPTRTVVFSELRKHDGVNFRNL 674
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
E QM+GRAGRRG+D G V+++ P + ++ L+SQF +Y M+
Sbjct: 675 LPGEFTQMSGRAGRRGLDPTGTVIVMAYNQPLTMG-DFKEVTLGTPTKLISQFRLTYNMI 733
Query: 371 LNLL 374
LNLL
Sbjct: 734 LNLL 737
>gi|413953571|gb|AFW86220.1| hypothetical protein ZEAMMB73_184778 [Zea mays]
Length = 1000
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 190/396 (47%), Gaps = 46/396 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 192 VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVY 251
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKGK + Q + + + P D ++ N
Sbjct: 252 TDYRPTPLQHYVFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPASDSAKKKENG 306
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ + ++ S S+ + + + R P I F F++R
Sbjct: 307 KRQ-------------KFTMAGTS------SEESDIFKMVKMIIQRQYDPVILFSFSKRE 347
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L ++ E + +E +L D + P + +L +G+ HH+G
Sbjct: 348 CEFLAMQMAKMDLNEDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 407
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 408 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYI 467
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN +
Sbjct: 468 QMSGRAGRRGIDLRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMR--- 524
Query: 379 VMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 407
S + D K L QA RSL + K +++
Sbjct: 525 ----SEDGDPEKLLRHSFYQFQADRSLPDLEKQIKE 556
>gi|255573838|ref|XP_002527838.1| helicase, putative [Ricinus communis]
gi|223532762|gb|EEF34541.1| helicase, putative [Ricinus communis]
Length = 991
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 172/354 (48%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 180 VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY 239
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y A L ++DEKGK + Q + + + P +G +R N
Sbjct: 240 TDYRPTPLQHYIFPAGADGLYLVVDEKGKFRE-----DSFQKAVNALVPKSEGEKKRENG 294
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + ++ G+ + + + R P I F F++R
Sbjct: 295 KWQKGL----VMGKLGEES---------------DIFKMVKMIIERQYDPVILFSFSKRE 335
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L ++ E +E +L D + P + +L +G+ HH+G
Sbjct: 336 CEFLAMQMAKMDLNEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 395
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L+S E
Sbjct: 396 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYI 455
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 456 QMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLN 509
>gi|345862325|ref|ZP_08814554.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
gi|344324612|gb|EGW36161.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
Length = 749
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 151/496 (30%), Positives = 228/496 (45%), Gaps = 78/496 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L + IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L W
Sbjct: 109 VITEDPNLEFISHIVFDEIHWLNDEERGTVWEESIILAPAKMKILGLSATIANAQHLVDW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I H LI ++R VPL +++ TK L +NY QL +
Sbjct: 169 IKSIRHEDVALIEEAKRVVPLEYFYYTKDTGL---------------VNYDQLWHYYRQK 213
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
KD +N N + ++ IR Q RD L
Sbjct: 214 LKDR------------INDENPFSP-------TTHLDLIRTIQ-------------RDHL 241
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-- 249
PA++F+F+R+ C A++ N L E VE K F+ P+A + + L
Sbjct: 242 PALFFVFSRKQCALKAMELATLANYLKSPERRTVEE--KFFQQFGPEADWSSSTRQLKRL 299
Query: 250 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
KG+A HHAG LP K +EELF L+KV++ TET + GIN P + SL+K
Sbjct: 300 CSKGIAYHHAGLLPSQKVIVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYDGR 359
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L ++E FQM+GRAGRRG+D +G LV Y K +EPL SQF +
Sbjct: 360 NFRPLANHEFFQMSGRAGRRGLDKKGFSFALVDLAYMEKSPPPKFQLNRLEPLTSQFRLT 419
Query: 367 YGMVLNLLA---------------GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
Y VLNL A A LS++ + +Q + LE A+ + ++ G+
Sbjct: 420 YNTVLNLTATLTQEQIEIYFQKSFAAYSYRLSSDHLHNELIQIQQQLEGAQHQLCEAVGS 479
Query: 412 YVGSNVMLAAKDELCKIQKETDVL----TSEISDDAIDRKSR---RLLSEAAYKEMANLQ 464
+ + EL +++K L S + + RK R +LLS++ ++ Q
Sbjct: 480 FNCPLKHHPKRKELERLRKTYKALGPRKQSRVYGREMARKIRSWEKLLSQSPKSCLSGRQ 539
Query: 465 EELKAEKRFRTELRRR 480
E K + + +++R
Sbjct: 540 ESCKDQSKAYLAIQQR 555
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
D + +G+ AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 675 DPRVAGITYAWSQGQTFVEVQALCNLDEGDIISVFRRTIDLMRQM 719
>gi|403340622|gb|EJY69602.1| Superfamily II RNA helicase [Oxytricha trifallax]
Length = 1110
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 177/356 (49%), Gaps = 32/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DEVHY+ D RG VWEE +I P V+ + LSAT+ NA E A WI +I + ++
Sbjct: 289 VIFDEVHYMRDKERGVVWEETMILLPTTVKYVFLSATIPNAREFAEWIVKIKKQPCSVVY 348
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL + + ++D+ G+ +K+ + S
Sbjct: 349 TDYRPTPLQHFIYPMGGEGIYCVVDQNGQ--------------------FKEQNFTKAIS 388
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
DMN + I+ + ++N + +Q ++ + + + + P I F F++R
Sbjct: 389 VLENDMNLDKILDD----KKNRNKTTQQKTTQNSEMKKIITLIVDKGLDPCIVFSFSKRD 444
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A L+ C+ + E +++L L + + P I+ +L +G+ HH G
Sbjct: 445 CEAYAMALKGCDFNKDEEKDQIKLIFNNAMSSLAEEDAQLPTIQSMLPLLQRGIGIHHGG 504
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K++F TET + GINMPART V +S+ K +T E
Sbjct: 505 LLPIVKEVIELLFQEGLLKILFTTETFSMGINMPARTVVFTSIEKFDGDEYRWITGGEFI 564
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG +++ + +L +PL S F Y M+LN++
Sbjct: 565 QMSGRAGRRGLDDRGVTIMIANKKLEPDVAKNILKGQSDPLYSAFHLGYNMLLNMM 620
>gi|449505096|ref|XP_004162375.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity
2-like 2-like [Cucumis sativus]
Length = 993
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 171/354 (48%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 181 IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQPCHIVY 240
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKG H + Q + + + P DG ++ N
Sbjct: 241 TDYRPTPLQHYIFPSGSEGLYLVVDEKG-HFRE----DSFQKALNALVPVSDGDKKKENG 295
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + L K ++ V +I R P I F F++R
Sbjct: 296 KWQKSLT------------LGKTGEDSDIFKMVKMII-------QRQYDPVILFSFSKRE 336
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L + E +E +L D + P + +L +G+ HH+G
Sbjct: 337 CEFLAMQMAKLDLNGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 396
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L+S E
Sbjct: 397 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYI 456
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 457 QMSGRAGRRGIDKRGICILMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMLLN 510
>gi|156097206|ref|XP_001614636.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148803510|gb|EDL44909.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 1393
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 188/396 (47%), Gaps = 45/396 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-IT 85
++ DEVHY++D RG +WEE II P VQI+ LSATV N E A W+G K + I+
Sbjct: 419 VIFDEVHYVNDNDRGFIWEESIIMLPPHVQILLLSATVPNYLEFADWVGFTKKKEIISIS 478
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY------------ 133
+ +RPVPL Y + ++DEK K + Y+++ E
Sbjct: 479 TKKRPVPLLHYIYAYDTIFQIMDEKNKIYSSAFKEIYVKVREKEQGGAHGGGGHGSGGHA 538
Query: 134 ---------KDGGSRRRNSRKH--------ADMNSNNIVTSFGQH-------QLSKNSIN 169
K S +RNS A SNN ++ ++ +L N N
Sbjct: 539 GHANHGGQAKHAPSAKRNSHDGKNKQPGGGAGAPSNNQPMAYNEYCKQKRRQKLFANEAN 598
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
++++ ++ + L + LP + F F+R C+ + + N LD S+V L +
Sbjct: 599 M--KTEIQKLQALIKKLEQDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKHKSKVHLFI 656
Query: 230 KRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
K RE K L KG+ HH+G LPI K +E LF +GL+K++FATET
Sbjct: 657 KESIAKLCTQDRELNQIKILTKLLEKGIGIHHSGLLPILKEIVEILFSKGLIKILFATET 716
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYE 343
A GINMPA++ V +S+ K + LTS+E QM+GRAGRR D G+V +
Sbjct: 717 FAMGINMPAKSVVFTSIYKHDQLKKRILTSSEYTQMSGRAGRRSSDKYGYVYIYCADKIP 776
Query: 344 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
+ ++L L S+F +Y M+L LL ++
Sbjct: 777 DQVQLTEMLMQKAVSLKSKFKVTYNMILKLLINKQI 812
>gi|150866387|ref|XP_001385966.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
gi|149387643|gb|ABN67937.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
Length = 1068
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 179/356 (50%), Gaps = 29/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 258 VIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEWIVKIHAQPCHVVY 317
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG +S + GG +
Sbjct: 318 TDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASISDA-------GGDDPASG 370
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K S G+ + N +S + +++ ++ R P I F F++R
Sbjct: 371 DK-----------SKGKKGQTYKGGNKDGKSDIYKIVKMIYMKRYN---PVIVFSFSKRD 416
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + ++ E + L P+A +E P IK +L +G+ HH+G
Sbjct: 417 CESLALKMSKLDFNNDDERDALTKIFNNAINLLPEADKELPQIKNILPLLKRGIGIHHSG 476
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 477 LLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYI 536
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 537 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 592
>gi|302757121|ref|XP_002961984.1| hypothetical protein SELMODRAFT_403447 [Selaginella moellendorffii]
gi|300170643|gb|EFJ37244.1| hypothetical protein SELMODRAFT_403447 [Selaginella moellendorffii]
Length = 1310
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 179/370 (48%), Gaps = 28/370 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ +V DEVHY++D RG VWEE+II P+ V ++ LSATV N E A W+G+ K
Sbjct: 440 DIEWVVFDEVHYVNDAERGVVWEEVIIMLPQHVNLVLLSATVPNIREFADWVGRTKQKKI 499
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEK-----GKHMNRKLSLNYLQLSTSEVKPYKDG 136
+T +++RPVPL L + + G + L + V P + G
Sbjct: 500 YVTGTTKRPVPLEHCLFYSGELHRICANETFLSLGVKAAKDAHLAKTTVKKGPVAPTQGG 559
Query: 137 -GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + N V KNS RS+ Q + L +++LP +
Sbjct: 560 RGNVQGRGGPGGRGGRGNKVIP-----EEKNSRGGPWRSETSQWYGLINVLSKKNLLPVV 614
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRIL---YPDAVREPAIKGL 248
F F++ CD + L +L E + + A R + P +R I+ L
Sbjct: 615 VFCFSKSRCDQSADSLTGSDLTTSTEKGVIRVFCNKAFSRLKGTDRQLPQVLR---IEEL 671
Query: 249 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
LK G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART K
Sbjct: 672 LKRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFHGFRKHDGK 731
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFT 364
QL E QMAGRAGRRG+D G V+++ P EG + +LL L SQF
Sbjct: 732 SFRQLYPGEYTQMAGRAGRRGLDTVGTVIVMCWDDIPDEG--DLRRLLTGKATKLESQFR 789
Query: 365 ASYGMVLNLL 374
+Y M+LNLL
Sbjct: 790 LTYTMILNLL 799
>gi|195054683|ref|XP_001994254.1| GH11203 [Drosophila grimshawi]
gi|193896124|gb|EDV94990.1| GH11203 [Drosophila grimshawi]
Length = 1194
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 175/362 (48%), Gaps = 42/362 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 367 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 426
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T + + L+D +GK YLQ + Y+
Sbjct: 427 YVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGK---------YLQGN------YEK 471
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R++ + + S Q Q + I + L+ + +P +
Sbjct: 472 AVERKKEMQGKSKGGGPKNYVSGKQDQST--------------WIGMIDFLKRNNKMPVV 517
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CDA V L+ +L E E V+ L+ L P P + L +
Sbjct: 518 AFTLSRNRCDANVAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVMTLKDALER 577
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART + S K
Sbjct: 578 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVIFDSYKKFDGIEMR 637
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G V+L+ + + E ++ E L SQF Y +
Sbjct: 638 ILKPGEYIQMAGRAGRRGHDENGTVILMCKASVPPSMELRPMILGLPEKLQSQFILRYAV 697
Query: 370 VL 371
+L
Sbjct: 698 IL 699
>gi|157877094|ref|XP_001686879.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68129954|emb|CAJ09262.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 968
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/439 (32%), Positives = 200/439 (45%), Gaps = 37/439 (8%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-- 78
L +V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH
Sbjct: 145 LREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPT 204
Query: 79 GKTELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
K +I + RPVPL Y A + ++DEKGK + +
Sbjct: 205 TKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGA 264
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
S K G H+ + + +++ + R+M P I
Sbjct: 265 AGPGNGSSKDPR----------GNHKGGGGRSHGGSSQSMMEIVKLVM---DRNMYPVIV 311
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KG 251
F F + C+ L N + E + V E+ L + + PAI+ L +G
Sbjct: 312 FSFAKAECERNALALSRLNFNNAEEDALVMEVFNNAMESLAEEDRKLPAIEHLHPLLKRG 371
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
V HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 372 VGIHHSGLLPILKEIVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRY 431
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LT E QM+GRAGRRG+D G V+ + +L G + L+S F +Y MVL
Sbjct: 432 LTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPNTLKQLTGGGADVLLSSFHLTYNMVL 491
Query: 372 NLL----AGAKVMHLSNESD-----DMKALQAG-----RSLEEARKLVEQSFGNYVGSNV 417
NLL + M + S D AL+ RS+EE E +F Y
Sbjct: 492 NLLRVEDVDPEFMMKRSFSQFQRLRDKPALEEKGAALRRSIEEINVAHESAFRQYTICED 551
Query: 418 MLA-AKDELCKIQKETDVL 435
M+A K+E+ I ++ +L
Sbjct: 552 MIAKKKNEVSHILRQPKLL 570
>gi|194745835|ref|XP_001955390.1| GF18738 [Drosophila ananassae]
gi|190628427|gb|EDV43951.1| GF18738 [Drosophila ananassae]
Length = 1195
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 177/367 (48%), Gaps = 42/367 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 364 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 423
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T + + L+D +G+ YLQ
Sbjct: 424 YVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGR---------YLQ----------- 463
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLP 193
G + RK + G KN+ ++ Q I + LR + +P
Sbjct: 464 GNYEKAVERKKEMQGKAKGGSGGGGFNGPKNA-------KLDQYTWIGLIDFLRRNNKMP 516
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGL 248
+ F +R CD V L+ +L E E V+ L+ L P P + L
Sbjct: 517 VVAFTLSRNRCDTNVAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDAL 576
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 577 ERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSHRKFDGLE 636
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG D G V+L+ +T + E ++ E L SQF Y
Sbjct: 637 VRNLKPGEYIQMAGRAGRRGHDETGTVILLCKTNVPPSMELRPMILGLPEKLQSQFILRY 696
Query: 368 GMVLNLL 374
++L L
Sbjct: 697 AVILTCL 703
>gi|195392329|ref|XP_002054810.1| GJ24644 [Drosophila virilis]
gi|194152896|gb|EDW68330.1| GJ24644 [Drosophila virilis]
Length = 1192
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 175/365 (47%), Gaps = 42/365 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 365 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 424
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T + + L+D +GK +LQ + Y+
Sbjct: 425 YVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGK---------FLQGN------YEK 469
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
R++ + + S Q Q + I + L+ + +P +
Sbjct: 470 AVERKKEMQSKSKAGGPKNYVSSKQDQCT--------------WIGLIDFLKRNNKMPVV 515
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CDA V L+ +L E V+ L+ L P P + L +
Sbjct: 516 AFTLSRNRCDANVASLQSVDLNTAVEKGAVQKFFLQCLAKLKPPDRTIPQVLALKDALER 575
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART + S K
Sbjct: 576 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVIFDSHMKFDGMEMR 635
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G V+L+ + + E ++ E L SQF Y +
Sbjct: 636 NLKPGEYIQMAGRAGRRGHDENGTVILMCKASVPPSMELRPMILGLPEKLQSQFILRYAV 695
Query: 370 VLNLL 374
+L L
Sbjct: 696 ILTCL 700
>gi|147792354|emb|CAN65767.1| hypothetical protein VITISV_043093 [Vitis vinifera]
Length = 836
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 184/365 (50%), Gaps = 28/365 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 219 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 278
Query: 81 -TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RP PL Y F + L L+ ++ + N+++L S K + GS
Sbjct: 279 PCHVVYTDFRPTPLQHYVFPIXGSGLYLVVDENEQFRED---NFVKLQDSFTKQKQGVGS 335
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ NS+ + NA S + +++ + R P I F
Sbjct: 336 KSVNSKTSGRIAKGG---------------NASGGSDIFKIVKMIME---RKFQPVIIFS 377
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F+RR C+ + + + E VE + + + R PAI+ +L +G+A
Sbjct: 378 FSRRECEQHAMSMSKLDFNTKEEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIA 437
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 438 VHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIG 497
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL
Sbjct: 498 SGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNL 557
Query: 374 LAGAK 378
++ A+
Sbjct: 558 MSRAE 562
>gi|449455162|ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
Length = 1352
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 195/386 (50%), Gaps = 39/386 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++DI RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 466 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKRI 525
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPY------ 133
+T +++RPVPL L + + + H + + ++S V
Sbjct: 526 HVTGTAKRPVPLEHCIFYSGELYKICESEIFLSHGLKAAKDASKKKNSSVVGGAGGSHAG 585
Query: 134 ----KDGGSRRR-----NSRKHADMNSNNIV----TSFGQHQLSKNSIN-AIRRSQVPQV 179
DG R+ S+++ S N+ TS+G + N RRS
Sbjct: 586 ASVANDGTKNRKVESFNRSKQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLW 645
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFR-- 233
+ + L + +LP + F F++ CD + + +L E SE+ + A R +
Sbjct: 646 LLLINRLSKKSLLPVVIFCFSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLKGS 705
Query: 234 -ILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
P VR ++GLL+ G+ HHAG LPI K +E LF RG++KV+F+TET A G+N
Sbjct: 706 DRSLPQIVR---VQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA 762
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEEC 348
PART V +L K QL E QMAGRAGRRG+D G V+++ + P E ++
Sbjct: 763 PARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCREEIPEE--KDL 820
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
+++ L SQF +Y M+L+LL
Sbjct: 821 KRVIVGTATKLESQFRLTYIMILHLL 846
>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis
vinifera]
Length = 995
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 184/365 (50%), Gaps = 28/365 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 181 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 240
Query: 81 T-ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RP PL Y F + L L+ ++ + N+++L S K + GS
Sbjct: 241 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFRED---NFVKLQDSFTKQKQGVGS 297
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ NS+ + NA S + +++ + R P I F
Sbjct: 298 KSVNSKTSGRIAKGG---------------NASGGSDIFKIVKMIME---RKFQPVIIFS 339
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F+RR C+ + + + E VE + + + R PAI+ +L +G+A
Sbjct: 340 FSRRECEQHAMSMSKLDFNTKEEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIA 399
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 400 VHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIG 459
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL
Sbjct: 460 SGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNL 519
Query: 374 LAGAK 378
++ A+
Sbjct: 520 MSRAE 524
>gi|255558832|ref|XP_002520439.1| helicase, putative [Ricinus communis]
gi|223540281|gb|EEF41852.1| helicase, putative [Ricinus communis]
Length = 1335
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 188/386 (48%), Gaps = 45/386 (11%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DEVHY++D RG VWEE+II P+ V I+ LSATV N E A WIG+ K
Sbjct: 453 DIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHVNIVLLSATVPNTVEFADWIGRTKQKKI 512
Query: 82 ELITSSRRPVPLT---------WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
++ +++RPVPL + +P K ++K + + + +S
Sbjct: 513 QVTGTTKRPVPLEHCLFYSGELYKICENETFIPQGLRVAKDAHKKKNTSAV---SSGSLA 569
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI--------------RRSQVPQ 178
+DG + +K +N N FG S + RRS+
Sbjct: 570 LRDGA----HGKKREYLNRNKQNKHFGSQNAGSFSGTSWGNQNNGNGQNNWGSRRSEASL 625
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL-- 235
+ + L + +LP + F F++ CD + + +L E SE+ + K F L
Sbjct: 626 WLQLVNKLSKKSLLPVVIFCFSKNRCDKSADGMSGTDLTSSSEKSEIRVFCDKAFSRLKG 685
Query: 236 ----YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
P VR ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N
Sbjct: 686 SDRNLPQIVRVQSL--LRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA 743
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEEC 348
PART V +L K QL E QMAGRAGRRG+D G V+++ + P E +
Sbjct: 744 PARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCRDEIPDE--RDL 801
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
++ L SQF +Y M+L+LL
Sbjct: 802 KHVIVGSATRLESQFRLTYIMILHLL 827
>gi|374995961|ref|YP_004971460.1| superfamily II RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214327|gb|AET68945.1| superfamily II RNA helicase [Desulfosporosinus orientis DSM 765]
Length = 749
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 182/371 (49%), Gaps = 60/371 (16%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L W
Sbjct: 109 VITEDPNLEYVSYIVFDEIHWLNDEERGTVWEESIILAPPKMKILGLSATIANARHLVDW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I H + LI R VPL +++ TK L D+ ++ RKL
Sbjct: 169 IESIRHEEVVLIEEHNRVVPLEYFYYTKDTGLVSYDQLWRYYRRKLK------------- 215
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
R N FG + + ++ IR Q RD L
Sbjct: 216 ------ERINDE-----------APFG----TTSHLDLIRTIQ-------------RDHL 241
Query: 193 PAIWFIFNRRGCDAAVQYLE---DCNLLDECEMSEVELALKRF---RILYPDAVREPAIK 246
PA++F+F+R+ C A++ +E N L E VE K F + + R+ +K
Sbjct: 242 PALFFVFSRKQC--AIKAMELAIMANYLKPNERKIVEDKFKHFFGQETDWSSSTRQ--LK 297
Query: 247 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
L KG+A HHAG LP K +EELF L+KV++ TET + GIN P ++ SL+K
Sbjct: 298 RLCSKGIAYHHAGLLPSQKVIVEELFLERLIKVLYCTETFSVGINYPVKSVCFDSLNKYD 357
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D +G +V Y K +EPL+SQF
Sbjct: 358 GRNFRPLANHEFFQMSGRAGRRGLDEKGFSFAIVDLGYMEKSPPPKFQLNKLEPLISQFR 417
Query: 365 ASYGMVLNLLA 375
+Y VLNL A
Sbjct: 418 LTYNTVLNLTA 428
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 893
D + + AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 674 FDPRVGVITHAWSQGSTFSEVQTLCNLDEGDIISVFRRTIDLMRQM 719
>gi|224104331|ref|XP_002313400.1| predicted protein [Populus trichocarpa]
gi|222849808|gb|EEE87355.1| predicted protein [Populus trichocarpa]
Length = 943
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 185/366 (50%), Gaps = 50/366 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ V I+ LSATV N E A WI + KT
Sbjct: 113 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHVNIVLLSATVPNTVEFADWISRTKQKTI 172
Query: 83 LIT-SSRRPVPL--TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+T +++RPVPL ++S + L + E M + L
Sbjct: 173 RVTGTTKRPVPLEHCLFYSGE---LHRICEGEIFMPQGL--------------------- 208
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ K+A +N+ G + S+ +Q + + L +LP + F F
Sbjct: 209 --KTAKYAFKKNNSTTVGGGPGAYTGPSV-----TQASLWLQLVSKLLKNSLLPVVIFCF 261
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPDAVREPAIKGLL-KG 251
++ CD + L +L E SE+ + K F L P VR ++ LL +G
Sbjct: 262 SKNRCDKSADSLSGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR---VRSLLSRG 318
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HHAG LPI K +E LF RG++KV+F+TET A G+N PART V +L K Q
Sbjct: 319 IAVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQ 378
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L E QMAGRAGRRGID G VV++ + P E + +++ L SQF +Y
Sbjct: 379 LLPGEYTQMAGRAGRRGIDKIGTVVVLCRDEIPEES--DLKRVIVGSATRLESQFRLTYI 436
Query: 369 MVLNLL 374
M+L+LL
Sbjct: 437 MILHLL 442
>gi|320593806|gb|EFX06209.1| ATP-dependent RNA helicase dob1 [Grosmannia clavigera kw1407]
Length = 1133
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 183/358 (51%), Gaps = 29/358 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HYL D SRG VWEE II P +V + LSAT+ NA + A WI +IH + ++
Sbjct: 277 VVFDEIHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNAFQFAEWIAKIHRQACHVVY 336
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL Y + +L ++DE+G K N +++ ++ +
Sbjct: 337 TDFRPTPLQNYCFPAGGNGILLVVDERGVFKEKNFNMAMALVE---------------QN 381
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
AD+N+ + G+++ + + + + + ++ P I F F++
Sbjct: 382 KGADPADINAK--MKGHGKNKKTNKGGGSGGNESSSDIYKIIRMIMKKNFHPVIVFNFSK 439
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
R C+ + N +E E + V + +A RE I LL KG+ HH
Sbjct: 440 RECEMLALKISGMNFNNESEQALVTRVFENAIDTLSEADRELSQITHLLPLLRKGIGVHH 499
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K +E LFQ L+KV+FATET + G+NMPART V +++ K LTS+E
Sbjct: 500 SGLLPILKEIVEILFQENLIKVLFATETFSIGLNMPARTVVFTTVRKFDGVSMRPLTSSE 559
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG +V++ + E K + AG + L S F Y M+LNL
Sbjct: 560 YVQMSGRAGRRGLDDRG-IVIMMLDDKLEPETAKAIVAGKQDRLNSAFHLGYNMILNL 616
>gi|255581147|ref|XP_002531387.1| helicase, putative [Ricinus communis]
gi|223529017|gb|EEF31007.1| helicase, putative [Ricinus communis]
Length = 962
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 220/457 (48%), Gaps = 53/457 (11%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P E++++ LSAT++NA E A WI +H +
Sbjct: 177 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICHLHKQ 236
Query: 81 T-ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RP PL Y F L L+ ++ + N+++L + K
Sbjct: 237 PCHVVYTDFRPTPLQHYVFPMGGVGLYLVVDENEQFRED---NFVKLQDTFTK------- 286
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+K D N ++ G +++K NA S + +++ + R P I F
Sbjct: 287 -----QKVGDWNKSS--NGKGSGRIAKAG-NASAGSDIYKIVKMIM---ERKFQPVIVFS 335
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F+RR C+ + + + E VE K + + R+ PAI+ +L +G+A
Sbjct: 336 FSRRECEQHAMSMSKLDFNTQEEKDVVEQVFKNAILCLNEEDRDLPAIELMLPLLQRGIA 395
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 396 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 455
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL
Sbjct: 456 SGEYIQMSGRAGRRGKDDRGICIIMIDERMEMNTIKDMILGKPAPLVSTFRLSYYSILNL 515
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ A+ A +++ SF + + ++ K+++E
Sbjct: 516 MRRAEGQFT------------------AEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAA 557
Query: 434 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
VL + + + + +L EMA L++++ AE
Sbjct: 558 VLDASGEAEVAEYHNLKL-------EMAQLEKKMMAE 587
>gi|374581749|ref|ZP_09654843.1| superfamily II RNA helicase [Desulfosporosinus youngiae DSM 17734]
gi|374417831|gb|EHQ90266.1| superfamily II RNA helicase [Desulfosporosinus youngiae DSM 17734]
Length = 748
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 139/418 (33%), Positives = 198/418 (47%), Gaps = 75/418 (17%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L W
Sbjct: 109 VITEDPNLEYVSHIVFDEIHWLNDEERGTVWEESIILAPPKMKILGLSATIANARHLVDW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I H + LI R VPL +++ TK L +NY QL
Sbjct: 169 IESIRHEEVALIEEHNRVVPLEYFYYTKDTGL---------------VNYDQLW------ 207
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
R RK D N + FG ++ IR Q R L
Sbjct: 208 -------RYYRRKIKDRNYDE--NPFG----PTTHLDLIRTIQ-------------RSHL 241
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF------RILYPDAVREPAIK 246
PA++F+F+R+ C A++ LE ++ + E ++ ++F I + + R+ +K
Sbjct: 242 PALFFVFSRKQC--ALKALELASIANYLRPHERKIVEEKFIHIFGQEIDWSSSTRQ--LK 297
Query: 247 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
L KG+A HHAG LP K +EELF L+KV++ TET + GIN P + SL+K
Sbjct: 298 RLCSKGIAYHHAGLLPSQKVVVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYD 357
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D +G +V Y K +EPL SQF
Sbjct: 358 GRNFRPLANHEFFQMSGRAGRRGLDEKGFSFAIVDLAYMEKSPPPKFQLNRLEPLTSQFR 417
Query: 365 ASYGMVLNLLA---------------GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
+Y VLNL A A HLS+E + Q + LEE + L E+
Sbjct: 418 LTYNTVLNLTATLTQTQIETYFQKSFSAYSYHLSSERLHSELAQIQQRLEETQYLCEE 475
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813
+ P G A+ I + EL + ++ + + L QL A+ +S+ E K ++ + ++++
Sbjct: 593 LLPRGTCASRIYVQ-ELLVTELIYSDVFQQLDDDQLNALISSIDFEARKNDMF-HRTTVF 650
Query: 814 EPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
+P+ + + E+ S + D + +G+ AW+ G T+ E+ C
Sbjct: 651 DPTP-----VKEIAEYIQSICG-------QDAVRYDPRVAGITHAWSQGSTFAEVQALCN 698
Query: 874 LDDGDLARLLRRTIDLLAQI 893
LD+GD+ + RR IDL+ Q+
Sbjct: 699 LDEGDIISVFRRAIDLMRQM 718
>gi|195145412|ref|XP_002013687.1| GL24270 [Drosophila persimilis]
gi|194102630|gb|EDW24673.1| GL24270 [Drosophila persimilis]
Length = 1197
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 176/365 (48%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 366 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 425
Query: 82 ELITSSRRPVPLTWYFSTKTA------LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + T + L+D G+ YLQ
Sbjct: 426 YVISTLKRPVPLQHFLYTGAGGKSRDDIFLLVDANGR---------YLQ----------- 465
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M + S SKN +NA + + I + L+ + +P +
Sbjct: 466 -GNYEKAVERKKEMQGKS--KSGAGASGSKNYVNA--KQEQYTWIGLIDFLKRNNKMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD V L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDTNVAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRSIPQVMVLKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET + G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFSMGVNMPARTVVFDSHKKFDGLEVR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G V VL + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTVIVLCKGNVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|392426422|ref|YP_006467416.1| superfamily II RNA helicase [Desulfosporosinus acidiphilus SJ4]
gi|391356385|gb|AFM42084.1| superfamily II RNA helicase [Desulfosporosinus acidiphilus SJ4]
Length = 749
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 181/369 (49%), Gaps = 56/369 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA +L W
Sbjct: 109 VITEDPNLEFVSHIVFDEIHWLNDEERGTVWEESIILAPAKMKILGLSATIANARQLVDW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I H + LI +R VPL +++ TK L + K +KL N +E P
Sbjct: 169 IESIRHEEVALIEEPKRIVPLEYFYFTKDTGLVDYNHLWKFYRQKLKQN-----KNEENP 223
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+ + H D+ IR Q RD L
Sbjct: 224 F--------SPTTHLDL---------------------IRTIQ-------------RDHL 241
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-RILYPDAVREPAIKGLL-- 249
PA++F+F+R+ C A++ +E + + + E + ++F + P+ + + L
Sbjct: 242 PALFFVFSRKQC--AIKAMELAAIANYLKSPERRMVEEKFLQYFGPENDWSSSTRQLKRL 299
Query: 250 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
KG+A HHAG LP K +EELF L+KV++ TET + GIN P + SL+K
Sbjct: 300 CSKGIAYHHAGLLPSQKMVVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYDGR 359
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
L ++E FQM+GRAGRRGID +G +V Y K +EPL SQF S
Sbjct: 360 NFRPLANHEFFQMSGRAGRRGIDKKGFSFAIVDLAYMEKSPPPKFQLNKLEPLTSQFRLS 419
Query: 367 YGMVLNLLA 375
Y VLNL A
Sbjct: 420 YNSVLNLTA 428
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 25/163 (15%)
Query: 754 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813
+ P G A+ I + EL + ++ + +L L Q+ A+ +S+ E K +++ +++
Sbjct: 594 LLPRGLCASRIYVQ-ELLVTELIYSDVLTQLDDDQMNALLSSIDFEARKNDIFQRSAAF- 651
Query: 814 EPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 873
ST V +++ + Q G E D + SG+ AW+ G ++ E+ C
Sbjct: 652 -DSTPVKDILTYI----------QSICGPE-SVRFDPRVSGITYAWSQGQSFSEVQKMCN 699
Query: 874 LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 916
LD+GD+ + RRTIDLL Q+ ++AV+ SN+ R
Sbjct: 700 LDEGDIISVFRRTIDLLRQM-----------RDAVNDSNLRSR 731
>gi|219669097|ref|YP_002459532.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539357|gb|ACL21096.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 762
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 185/371 (49%), Gaps = 59/371 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++++ L V I+ DE+H+L+D RGTVWEE II P ++++ LSAT+ANA +L W
Sbjct: 121 VITNDPSLESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATIANAQQLVDW 180
Query: 74 IGQIHGK-TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 131
IG I + LI +RR VPL +Y FS T L+ NY +L
Sbjct: 181 IGTIRQEDVALIQENRRIVPLEYYYFSRDTGLV----------------NYEKLW----- 219
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
K+ + + G N ++ I+ Q +
Sbjct: 220 -------------KYYRQQIQSAPPTEGSLFAPTNHLDLIKVIQ-------------KQY 253
Query: 192 LPAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL- 248
LPA++F+F+R+ C D A + N L+ E +VE A L+ F P++ P+ + L
Sbjct: 254 LPALYFVFSRKQCADKASELAYLTNYLNPQEKRQVEDAFLEHFG---PESDWSPSTRLLR 310
Query: 249 ---LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+KG+A HHAG +P K +EELF + LV V++ TET + GIN P R+ +L+K
Sbjct: 311 RLAVKGIAFHHAGLMPSQKVLVEELFLKRLVHVLYCTETFSVGINYPVRSVCFDTLNKFD 370
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 371 GRNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFK 430
Query: 365 ASYGMVLNLLA 375
SY VLNL A
Sbjct: 431 LSYNTVLNLQA 441
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 904
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|336263716|ref|XP_003346637.1| hypothetical protein SMAC_04070 [Sordaria macrospora k-hell]
gi|380091343|emb|CCC10839.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1079
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 183/363 (50%), Gaps = 39/363 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 281 VVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 340
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 341 TDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------------- 383
Query: 142 NSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+K D N S + +K A ++ + ++I + ++ P I F F
Sbjct: 384 -EKKGTDSNDWSAKQKGKGKNKKTNKGGEAANEKADIAKIIKMIL---KKNFQPVIVFNF 439
Query: 200 NRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL----KG 251
++R C+ A N DE M E AL + L D P I +L KG
Sbjct: 440 SKRECEQMALASSTMKFNAPDEENMVNKVFENALAQ---LSEDDKNLPQIANILPLLRKG 496
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 497 IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGQQRRP 556
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F Y MVL
Sbjct: 557 LTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHLGYNMVL 616
Query: 372 NLL 374
NLL
Sbjct: 617 NLL 619
>gi|356527455|ref|XP_003532326.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine
max]
Length = 981
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 171/354 (48%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
IV DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 168 IVFDEVHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHVVY 227
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKGK + Q S + + P +G ++ N
Sbjct: 228 TDYRPTPLQHYLFPSGGDGLYLVVDEKGKFRE-----DSFQKSLNALIPATEGDKKKENG 282
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + G R + + + + R P I F F++R
Sbjct: 283 KWQKGL-------VLG------------RSGEESDIFKMVKMIIQRQYDPVILFSFSKRE 323
Query: 204 CDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L + E +E + +L D + P + +L +G+ HH+G
Sbjct: 324 CEFLAMQMAKMDLNGDNEKDNIEQIFCSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSG 383
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K ++S E
Sbjct: 384 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 443
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ ++ + L S F SY M+LN
Sbjct: 444 QMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILN 497
>gi|194910220|ref|XP_001982093.1| GG12404 [Drosophila erecta]
gi|190656731|gb|EDV53963.1| GG12404 [Drosophila erecta]
Length = 1197
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 177/365 (48%), Gaps = 40/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFSTKTA------LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPLT + T T + L+D +GK +LQ
Sbjct: 428 YVISTLKRPVPLTHFLYTGTGEKSRDDIFLLVDAQGK---------FLQ----------- 467
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M S N NA + + I + LR + +P +
Sbjct: 468 -GNYEKAVERKKEMQGKAKGGG----AGSNNHFNA--KQEQYTWIGLIDFLRRNNKMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD+ + L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDSNLAALQSVDLNTEREKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALQR 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G +++ + + E ++ + L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPDKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|224003637|ref|XP_002291490.1| helicase [Thalassiosira pseudonana CCMP1335]
gi|220973266|gb|EED91597.1| helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 947
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 181/358 (50%), Gaps = 24/358 (6%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA + WI +IH + ++
Sbjct: 117 VIYDEVHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNAKQFVNWIAKIHHQPCHVVY 176
Query: 86 SSRRPVPLTWYFSTK--TALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++ RP PL Y + L ++DEKGK N + +++ LQ GG
Sbjct: 177 TNYRPTPLQHYIFPQGGDGLHLVVDEKGKFREANFQKAMSTLQ-----------GGGGTD 225
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ A M+S GQ + S + +++ + +R++ P I F F++
Sbjct: 226 GAIADAMMDSGGGKGGRGQKRKRGGPAGKGPNSDLHRIVKLVM---TRNLNPVIVFSFSK 282
Query: 202 RGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAAHH 256
+ C+ L+ + DE E + ++ L D P ++ LL +G+ HH
Sbjct: 283 KDCEKYALELKREDYTDEVEKDLITQVYSNAIESLSEDDRTLPQVEALLPLLKRGIGIHH 342
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
G LPI K +E LF GL+K +FATET A GINMPA+T V ++ K +TS E
Sbjct: 343 GGLLPILKEIVEILFSEGLIKALFATETFAIGINMPAKTVVFTNTRKFDGKEIRWVTSGE 402
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG D+RG V+ + C +L+ +PL S + SY M+LN++
Sbjct: 403 YIQMSGRAGRRGKDDRGVVIQMMDEKMEPTVCKGILYGDPDPLNSSYKISYNMLLNMM 460
>gi|50419435|ref|XP_458244.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
gi|49653910|emb|CAG86320.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
Length = 1062
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 178/356 (50%), Gaps = 29/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D +RG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 250 VIFDEVHYMRDKARGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHAQPCHVVY 309
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG N+ + S D S S
Sbjct: 310 TDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREE----NFQKAMASISDNVGDDPSSADKS 365
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ G+ + N +S + +++ ++ R P I F F++R
Sbjct: 366 K--------------GKKGQTYKGGNKDGKSDIYKIVKMIYMKRYN---PVIVFSFSKRD 408
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + + E + L PDA +E P IK +L +G+ HH+G
Sbjct: 409 CESLALKMSKLDFNTDDEREALTKIFNNAIELLPDADKELPQIKNILPLLRRGIGIHHSG 468
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 469 LLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYI 528
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 529 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 584
>gi|195451047|ref|XP_002072745.1| GK13521 [Drosophila willistoni]
gi|194168830|gb|EDW83731.1| GK13521 [Drosophila willistoni]
Length = 1227
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 181/371 (48%), Gaps = 22/371 (5%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 369 DLEYVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTMELANWVGSTKKRKV 428
Query: 82 ELITSSRRPVPLTWYFSTKTA------LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T + L+D +GK++ + + K +
Sbjct: 429 YVISTLKRPVPLMHYLYTGAGGRSRDDIFLLVDAQGKYLQENYEKAVARKKEMQSKS-EG 487
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLS------KNSINAIRRSQVPQVIDTLWHLRSR 189
GG + S K N + + + + KN ++ + Q+ I + L+
Sbjct: 488 GGPKTHASGKPEQGNPGDRKKEAPKAKSTPFISGPKNYVSGKQDRQI--WIGLIDFLKRS 545
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI--- 245
+ +P + F +R CD V L+ +L E E V ++ L P P +
Sbjct: 546 NKMPVVAFTLSRNRCDQNVAALQCVDLNTEQEKKGVRKFFQQCLAKLKPPDRTIPQVMVL 605
Query: 246 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
L +G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART + S K
Sbjct: 606 RDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVIFDSHRKF 665
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQF 363
L E QMAGRAGRRG D G V+L+ + E ++ E L SQF
Sbjct: 666 DGLEVRNLKPGEYIQMAGRAGRRGHDENGTVILLCKGNVPPTMELRPMILGLPEKLQSQF 725
Query: 364 TASYGMVLNLL 374
Y ++L L
Sbjct: 726 ILRYAVILTCL 736
>gi|449473300|ref|XP_004153842.1| PREDICTED: helicase SKI2W-like, partial [Cucumis sativus]
Length = 520
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 195/386 (50%), Gaps = 39/386 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++DI RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 98 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKRI 157
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPY------ 133
+T +++RPVPL L + + + H + + ++S V
Sbjct: 158 HVTGTAKRPVPLEHCIFYSGELYKICESEIFLSHGLKAAKDASKKKNSSVVGGAGGSHAG 217
Query: 134 ----KDGGSRRR-----NSRKHADMNSNNIV----TSFGQHQLSKNSIN-AIRRSQVPQV 179
DG R+ S+++ S N+ TS+G + N RRS
Sbjct: 218 ASVANDGTKNRKVESFNRSKQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLW 277
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL--- 235
+ + L + +LP + F F++ CD + + +L E SE+ + K F L
Sbjct: 278 LLLINRLSKKSLLPVVIFCFSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLKGS 337
Query: 236 ---YPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 291
P VR ++GLL+ G+ HHAG LPI K +E LF RG++KV+F+TET A G+N
Sbjct: 338 DRSLPQIVR---VQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA 394
Query: 292 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEEC 348
PART V +L K QL E QMAGRAGRRG+D G V+++ + P E ++
Sbjct: 395 PARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCREEIPEE--KDL 452
Query: 349 CKLLFAGVEPLVSQFTASYGMVLNLL 374
+++ L SQF +Y M+L+LL
Sbjct: 453 KRVIVGTATKLESQFRLTYIMILHLL 478
>gi|125774775|ref|XP_001358639.1| GA10159 [Drosophila pseudoobscura pseudoobscura]
gi|54638378|gb|EAL27780.1| GA10159 [Drosophila pseudoobscura pseudoobscura]
Length = 1197
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 176/365 (48%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 366 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 425
Query: 82 ELITSSRRPVPLTWYFSTKTA------LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL + T + L+D G+ YLQ
Sbjct: 426 YVISTLKRPVPLQHFLYTGAGGKSRDDIFLLVDANGR---------YLQ----------- 465
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M + S SKN +NA + + I + L+ + +P +
Sbjct: 466 -GNYEKAVERKKEMQGKS--KSGAGASGSKNYVNA--KQEQYTWIGLIDFLKRNNKMPVV 520
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD V L+ +L E E V+ L+ L P P + L +
Sbjct: 521 AFTLSRNRCDTNVAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRSIPQVMVLKDALER 580
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET + G+NMPART V S K
Sbjct: 581 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFSMGVNMPARTVVFDSHKKFDGLEVR 640
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG D G V VL + + E ++ E L SQF Y +
Sbjct: 641 NLKPGEYIQMAGRAGRRGHDETGTVIVLCKGNVPPSMELRPMILGLPEKLQSQFILRYAV 700
Query: 370 VLNLL 374
+L L
Sbjct: 701 ILTCL 705
>gi|17542826|ref|NP_501757.1| Protein MTR-4 [Caenorhabditis elegans]
gi|2495152|sp|Q23223.1|MTR4_CAEEL RecName: Full=mRNA transport homolog 4; AltName:
Full=Uncharacterized helicase W08D2.7
gi|3880559|emb|CAA94235.1| Protein MTR-4 [Caenorhabditis elegans]
Length = 1026
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 177/356 (49%), Gaps = 37/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II K ++ LSAT+ NA + A W+ I + ++
Sbjct: 235 VVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVY 294
Query: 86 SSRRPVPLT-WYFSTK-TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL W + + +++ KG+ K L+T+ G S
Sbjct: 295 TDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATA-------GDS----- 342
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
S N + G Q N + IR + S D L I F F+R+
Sbjct: 343 -----AGSFNKRRTGGGTQGDSNVLKIIR------------SVASNDGLNCIVFSFSRKE 385
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C++ L+D + + E V+ + L P+ + P I +L +G+ HH+G
Sbjct: 386 CESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSG 445
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
+PI K IE LF GLVKV+FATET + G+NMPART V +S K S +TS E
Sbjct: 446 LMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYI 505
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLNL+
Sbjct: 506 QMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLM 561
>gi|241957593|ref|XP_002421516.1| DEAD-box ATP-dependent RNA helicase, putative; mRNA export/exosome
component, putative [Candida dubliniensis CD36]
gi|223644860|emb|CAX40855.1| DEAD-box ATP-dependent RNA helicase, putative [Candida dubliniensis
CD36]
Length = 1068
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 184/358 (51%), Gaps = 32/358 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 257 VVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVY 316
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL Y + + ++DEKG + N + ++ + ++ + D G +
Sbjct: 317 TDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPAANDSGRGNK 376
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ T+ G++ K I I + + +++ + P I F F++
Sbjct: 377 KGK-----------TNKGRNHDGKGDIYKIVK---------MIYMKKYN--PVIVFSFSK 414
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
R C++ + + + E + + L P+A RE P IK +L +G+ HH
Sbjct: 415 RDCESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHH 474
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 475 SGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGE 534
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 YIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 592
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 900 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 959
Query: 818 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 872
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 960 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1012
Query: 873 ALDDGDLARLLRRTIDLLAQI 893
+ +G + R LRR I+L+ Q+
Sbjct: 1013 DIYEGSIIRALRREIELIKQL 1033
>gi|354557751|ref|ZP_08977009.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550545|gb|EHC19982.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 750
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 177/367 (48%), Gaps = 51/367 (13%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V I+ DE+H+L+D RGTVWEE II P ++I+ LSAT+ANA +L W
Sbjct: 109 VITEDPALQRVTHIIFDEIHWLNDEERGTVWEESIILAPAHMKILGLSATIANAKQLVQW 168
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I K LI R VPL ++F TK L ++ ++ +K+ K
Sbjct: 169 IESIREEKVSLIEEQHRIVPLDYFFYTKDTGLVTYEQLWRYYRQKM------------KE 216
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
K+ S + H D+ I I R L
Sbjct: 217 RKNPASSPFSPTTHLDL------------------IRTIHRK----------------YL 242
Query: 193 PAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGLL- 249
P ++F+F+R+ C D A + N L E ++VE + L +F + +K L
Sbjct: 243 PTLYFVFSRKQCADKARELAAIANYLKPSESAQVEASFLHQFGPEEEWSASTRQLKRLCS 302
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KG+A HHAG LP K+ +EELF + L+ V++ TET + GIN P + SL+K
Sbjct: 303 KGIAFHHAGLLPAQKAIVEELFLKRLIHVLYCTETFSVGINYPVKAVCFDSLNKFDGRNF 362
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
L ++E FQM+GRAGRRGID RG+ LV Y + +EPL SQF SY
Sbjct: 363 RALANHEFFQMSGRAGRRGIDERGYSFALVDLNYMEKSPPPRFNIKRLEPLTSQFKLSYN 422
Query: 369 MVLNLLA 375
VLNL A
Sbjct: 423 TVLNLQA 429
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 749 INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN 808
I + + P GE A I + EL + ++ + I L QL A+ +++ E K ++
Sbjct: 590 IRGEELLPRGECARHIYVQ-ELLVTELIYSDIFDTLDDNQLNALLSAIDFESRKNDFFQK 648
Query: 809 NSSIYEPSTTVINVINVLDEHRSSFLELQE-KHGVEIPCCLDS-----QFSGMVEAWASG 862
+ +LD + +QE +H ++ C +D+ + S + +W+ G
Sbjct: 649 --------------LPILD-----WTPIQELEHYIQSVCGVDTVRYDPRVSIITYSWSKG 689
Query: 863 LTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL---PDVDQRLQ 904
L++ E+ C LD+GD+ + RRTIDLL Q+ P ++QRL+
Sbjct: 690 LSFIEIQQLCNLDEGDIISVFRRTIDLLRQMRDAVTEPRLNQRLK 734
>gi|336468765|gb|EGO56928.1| hypothetical protein NEUTE1DRAFT_84510 [Neurospora tetrasperma FGSC
2508]
gi|350288944|gb|EGZ70169.1| putative ATP dependent RNA helicase [Neurospora tetrasperma FGSC
2509]
Length = 1066
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 209/433 (48%), Gaps = 61/433 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 250 VVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 309
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 310 TDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------------- 352
Query: 142 NSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+K D N S + +K A ++ + ++I + ++ P I F F
Sbjct: 353 -EKKGTDSNDWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMIL---KKNFQPVIVFNF 408
Query: 200 NRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL----KG 251
++R C+ A N DE M E AL L D P I +L KG
Sbjct: 409 SKRECEQMALASSSMKFNAPDEENMVNKVFENALAS---LSEDDKNLPQISNILPLLRKG 465
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 466 IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGQQRRP 525
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F Y MVL
Sbjct: 526 LTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHLGYNMVL 585
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 431
NLL ++ +S E ++E+ F + + + + EL +Q+E
Sbjct: 586 NLL---RIEAISPEY-----------------MLERCFFQFQNAASVPQLERELISLQQE 625
Query: 432 TDVLTSEISDDAI 444
D + I D++I
Sbjct: 626 RDAII--IPDESI 636
>gi|378756169|gb|EHY66194.1| ATP-dependent DEAD/H RNA helicase [Nematocida sp. 1 ERTm2]
Length = 970
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 176/364 (48%), Gaps = 32/364 (8%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + +V DEVHY+ D RG +WEE II P ++ I LSAT+ NA+E A WI IH +
Sbjct: 176 LRETHFVVFDEVHYMRDRERGVIWEETIILLPPSIRFIFLSATIPNAEEFARWIVSIHKQ 235
Query: 81 -TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
+I + +RP PL Y T K H N T ++K D
Sbjct: 236 PCHVIYTEKRPTPLEHYIYVNTP-----GNKITHRN-----------TDQLKTVSDQLFV 279
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ K + NI + ++S+ RR + V+D L LR + LP I F F
Sbjct: 280 IVD--KEGTFQTKNIPRIQRRPEISQG---YNRRRETINVVDILRILRQTNNLPTIIFSF 334
Query: 200 NRRGCDAAVQYLE---DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL----LKGV 252
R+ C++ E D N E +M + L + P I GL L+G+
Sbjct: 335 RRKECESYAMLTEKEFDFNTDKEKDMISTIFS-NALNTLREEDRTLPQIVGLKALLLRGI 393
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HH+G +PI K IE LFQ L+KV+FATET + G+NMPA++ + +S+ K +
Sbjct: 394 GVHHSGLMPIVKEIIEILFQENLLKVLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFI 453
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
TS E QM+GRAGRRG D G+V+L T +E K+L L S F SY +
Sbjct: 454 TSGEYIQMSGRAGRRGTDRIGNVILALESTMTLTEKEIRKVLHGPSNTLDSAFKLSYNTI 513
Query: 371 LNLL 374
LN+L
Sbjct: 514 LNIL 517
>gi|209877104|ref|XP_002139994.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209555600|gb|EEA05645.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 1447
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 195/401 (48%), Gaps = 46/401 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELIT 85
++ DE+HY+ D RG VWEE II P V+++ LSAT+ N E A WI + H ++
Sbjct: 294 VIFDEIHYMRDKERGVVWEESIILLPDTVRLVFLSATIPNHLEFAEWICRTKHQPCHVVY 353
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RPVPL + + T + ++DE + N +L+ L+L+T E + + G +++
Sbjct: 354 TDYRPVPLQHFVFPAGGTGVYLVMDENKIFREDNYSKALSSLKLTTEE-RSNRVGEFKKK 412
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
N+R ++ NIV + R+ LP I F F++
Sbjct: 413 NTRSQLRIDLENIVN----------------------------MCQERNYLPIIVFSFSK 444
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
+ C+ YL +L + E ++ + + R P + G+L +G+ HH
Sbjct: 445 KDCETNAMYLGSTDLTNSEEKESIDFIFQSALATLAEEDRNIPQVVGMLPLLRRGIGIHH 504
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
G LP+ K +E LF +KV+F+TET + GINMPA+T + +SL K + S E
Sbjct: 505 GGLLPVVKEIVEILFGESFIKVLFSTETFSMGINMPAKTVIFTSLRKFDGKESRLINSGE 564
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV--SQFTASYGMVLNL- 373
QM+GRAGRRG+D+RG + ++ + K +F G +PL SQF Y M+LNL
Sbjct: 565 FIQMSGRAGRRGLDDRG-LTIIMLDEQADPWAVKAIFTG-DPLRIDSQFYIGYNMLLNLL 622
Query: 374 -LAGAKVMHLSNES-DDMKALQAGRSLEEARKLVEQSFGNY 412
L GA ++ S + SL E +K +E+ Y
Sbjct: 623 RLEGADPEYMIQRSFSQFLKRRKTVSLNEEKKRIEKIISKY 663
>gi|402468581|gb|EJW03718.1| hypothetical protein EDEG_01987 [Edhazardia aedis USNM 41457]
Length = 970
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 184/391 (47%), Gaps = 51/391 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V+ ++ DE+HYL D RG VWEE II P + + LSAT+ NADE A W+ I
Sbjct: 187 EVNYVIFDEIHYLKDAERGVVWEEAIILSPSHFRFVFLSATIPNADEFAKWVVSISKVCC 246
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I + +RP PL + T ++ EK + ++K+ L+ + K+ +R+R
Sbjct: 247 HVIGTDKRPTPLEHFLWNSTKMVS--PEKTTYFDKKVFLSAI----------KNVSNRKR 294
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
++ V + + H+ S+ +LP I F F+R
Sbjct: 295 --------------------------------TEENDVKNLIMHVSSQGLLPCIVFSFSR 322
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAHH 256
+ C+ L+D D+ + ++ L D + + + L +GV HH
Sbjct: 323 KECERYALTLQD-GFTDDNQKEKITLIFNAAIANLRDEEKNLDLIQSILPMLQRGVGIHH 381
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
AG LPI K +E LFQ L+ V+FATET A G+NMPA+ V +SL K + ++S E
Sbjct: 382 AGLLPIIKEIVEILFQENLLFVLFATETFAIGLNMPAKCVVFTSLKKFDGESKRLVSSGE 441
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM+GRAGRR +D +G V + Y ++ KL + L S F SY M+LNL+
Sbjct: 442 YIQMSGRAGRRNLDTKGIVFSLMNEYITLKKAVKLFSGQADKLSSAFKLSYNMILNLMRI 501
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
V + Q+ +LEE +E+
Sbjct: 502 VDVDPVFLIKRSFFYFQSQNNLEETYYKIEK 532
>gi|85079176|ref|XP_956298.1| ATP-dependent RNA helicase DOB1 [Neurospora crassa OR74A]
gi|28881140|emb|CAD70310.1| probable ATP dependent RNA helicase [Neurospora crassa]
gi|28917356|gb|EAA27062.1| ATP-dependent RNA helicase DOB1 [Neurospora crassa OR74A]
gi|57019005|gb|AAW32908.1| FRQ-interacting RNA helicase [Neurospora crassa]
Length = 1106
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 209/433 (48%), Gaps = 61/433 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 290 VVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVY 349
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 350 TDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------------- 392
Query: 142 NSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+K D N S + +K A ++ + ++I + ++ P I F F
Sbjct: 393 -EKKGTDSNDWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMIL---KKNFQPVIVFNF 448
Query: 200 NRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL----KG 251
++R C+ A N DE M E AL L D P I +L KG
Sbjct: 449 SKRECEQMALASSSMKFNAPDEENMVNKVFENALAS---LSEDDKNLPQISNILPLLRKG 505
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 506 IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGQQRRP 565
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F Y MVL
Sbjct: 566 LTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHLGYNMVL 625
Query: 372 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 431
NLL ++ +S E ++E+ F + + + + EL +Q+E
Sbjct: 626 NLL---RIEAISPEY-----------------MLERCFFQFQNAASVPQLERELISLQQE 665
Query: 432 TDVLTSEISDDAI 444
D + I D++I
Sbjct: 666 RDAII--IPDESI 676
>gi|389582939|dbj|GAB65675.1| DEAD/DEAH box helicase [Plasmodium cynomolgi strain B]
Length = 1366
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 186/397 (46%), Gaps = 47/397 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-IT 85
++ DEVHY++D RG +WEE II P VQI+ LSATV N E A W+G K + I+
Sbjct: 420 VIFDEVHYVNDNDRGFIWEESIIMLPPHVQILLLSATVPNYLEFADWVGFTKKKEIISIS 479
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE---------------- 129
+ +RPVPL Y ++ ++DEK K + Y+++ E
Sbjct: 480 TKKRPVPLLHYIYAYDSIFQIMDEKNKIYSSAFKEIYIKVREKEQASAATHGGHGSGSHG 539
Query: 130 ---VKPYKDGGSRRRNSRKHA-----------------DMNSNNIVTSFGQHQLSKNSIN 169
K +RNS M N + +L N N
Sbjct: 540 GHGGGQAKQAPGAKRNSHDGKNKQQGGGGPGTTPNNNQPMAYNEYCKQKRRQKLFANEAN 599
Query: 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 229
++++ ++ + L + LP + F F+R C+ + + N LD S+V L +
Sbjct: 600 M--KTEIQKLQALIKKLEQDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKHKSKVHLFI 657
Query: 230 KRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
K RE K L KG+ HH+G LPI K +E LF +GL+K++FATET
Sbjct: 658 KESIAKLCTQDRELNQIKILTKLLEKGIGIHHSGLLPILKEIVEILFSKGLIKILFATET 717
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
A GINMPA++ V +S+ K + LTS+E QM+GRAGRR D G+ V + P +
Sbjct: 718 FAMGINMPAKSVVFTSIYKHDQLKKRILTSSEYTQMSGRAGRRSSDKYGY-VYIYCPDKI 776
Query: 345 AEEC--CKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
++ ++L L S+F +Y M+L LL ++
Sbjct: 777 PDQVQLTEMLMQKAVSLKSKFKVTYNMILKLLINKQI 813
>gi|307102833|gb|EFN51100.1| hypothetical protein CHLNCDRAFT_141429 [Chlorella variabilis]
Length = 1049
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 171/357 (47%), Gaps = 27/357 (7%)
Query: 26 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELI 84
+IV DE+HYL D RG VWEE II PK + LSAT+ N+ E A W+ + HG ++
Sbjct: 178 LIVYDEIHYLRDKERGVVWEESIILAPKTARFAFLSATIPNSREFADWVAKTHGSPCHVV 237
Query: 85 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ RP PL Y + L ++D KG QL +EVK +R
Sbjct: 238 YTDYRPTPLEHYIFPAGGDGLFLVVDNKGTFREDNFQKAVAQLQEAEVK-------AKRP 290
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
+ V G + + +R + R P I F F+++
Sbjct: 291 AGGGGGKGKKGGVQEAGAPKEESDIFKIVR------------MIAERRFDPVIVFSFSKK 338
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 257
C+A + ++ +L +E E V+ + DA R P I G L +GV HH+
Sbjct: 339 ECEALAKQMQGLDLNEEAEKKLVDGIFSSAIDVLSDADRRLPQIAGALPMLRRGVGVHHS 398
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K +E LFQ GL+KV+FATET + G+NMPA+T V + + K G + S E
Sbjct: 399 GLLPILKEVVEILFQEGLLKVLFATETFSTGLNMPAKTVVFTHVRKFDGGGFRWVRSGEY 458
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D++G +L+ ++ + L S+F Y M+LNLL
Sbjct: 459 IQMSGRAGRRGLDDKGVAILMMDEKLEPAVAKDMIKGAPDTLHSEFHLEYSMLLNLL 515
>gi|296083960|emb|CBI24348.3| unnamed protein product [Vitis vinifera]
Length = 968
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 173/357 (48%), Gaps = 35/357 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE I+ P+ + + LSATV NA E A W+ ++H + ++
Sbjct: 182 VIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY 241
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKGK + Q + + + P +G +R N
Sbjct: 242 TDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPAGEGDKKRENG 296
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ + +V G+ + + + R P I F F++R
Sbjct: 297 KRQKGL----VVGRAGEES---------------DIFKMVKMIIQRQYDPVILFSFSKRD 337
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIK------GLLK-GVAAH 255
C+ + +L D+ E +E +L D + P + LLK G+ H
Sbjct: 338 CEFLAMQMARMDLNDDNEKVNIETIFWSAMDMLSDDDKKLPQARIVSNMLPLLKRGIGVH 397
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K ++S
Sbjct: 398 HSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG 457
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 458 EFIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLN 514
>gi|322696407|gb|EFY88200.1| ATP-dependent RNA helicase DOB1 [Metarhizium acridum CQMa 102]
Length = 1098
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 208/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 271 VIFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 330
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF S ++DEKG + +L ++ + D +++R
Sbjct: 331 TDFRPTPLQNYFFPSGGKGARIVVDEKGNFNEQNFNLVMKEVEDKKGADSNDINAKQRGK 390
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K+ +N + H++ + +I + P I F F++
Sbjct: 391 GKNKKINKGGVDEGSDIHKIIRMTIK-------------------KKFNPVIVFNFSKAE 431
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + + D+ E + V+ + RE P I+ LL +GV HH+G
Sbjct: 432 CENMALRISNLSFNDDSEKAMVKKVFHSAIESLTEQDRELPQIQHLLPLLERGVGVHHSG 491
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 492 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTSSEYI 551
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + ++ + L S F Y M+LNLL +
Sbjct: 552 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKDIVTGHQDKLNSAFYLGYNMILNLL---R 608
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D L+
Sbjct: 609 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQERDGLS-- 649
Query: 439 ISDDA 443
I D+A
Sbjct: 650 IPDEA 654
>gi|195109725|ref|XP_001999432.1| GI24507 [Drosophila mojavensis]
gi|193916026|gb|EDW14893.1| GI24507 [Drosophila mojavensis]
Length = 1194
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 179/367 (48%), Gaps = 46/367 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P V II LSATV N ELA W+G K
Sbjct: 367 DLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKV 426
Query: 82 ELITSSRRPVPLTWYFST------KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ +RPVPL Y T + + L+D +G+ +LQ
Sbjct: 427 YVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGR---------FLQ----------- 466
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G+ + + +M S + KN + + ++ Q I + L+ + +P +
Sbjct: 467 -GNYEKAVERKKEMQSKSKTGG------PKNYVGS-KQDQCTW-IGLIDFLKRNNKMPVV 517
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI----KGLLK 250
F +R CD V L+ +L E V+ L+ L P P + L +
Sbjct: 518 AFTLSRNRCDTNVAALQSVDLNTAVEKGSVQKFFLQCLAKLKPPDRTIPQVLALKDSLER 577
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART + S K +
Sbjct: 578 GIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVIFDSHKKFDGTEMR 637
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L E QMAGRAGRRG D G V+L+ Q P + E ++ E L SQF Y
Sbjct: 638 NLKPGEYIQMAGRAGRRGHDENGTVILLCKGQVP--PSMELRPMILGLPEKLQSQFILRY 695
Query: 368 GMVLNLL 374
++L L
Sbjct: 696 AVILTCL 702
>gi|89894658|ref|YP_518145.1| hypothetical protein DSY1912 [Desulfitobacterium hafniense Y51]
gi|89334106|dbj|BAE83701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 750
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 59/371 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++++ L V I+ DE+H+L+D RGTVWEE II P ++++ LSAT+ANA +L W
Sbjct: 109 VITNDPSLESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATIANAQQLVDW 168
Query: 74 IGQIHGK-TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 131
IG I + LI +RR VPL +Y FS T L+ NY +L
Sbjct: 169 IGTIRQEDVALIQENRRIVPLEYYYFSRDTGLV----------------NYEKLW----- 207
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
K+ + + G N ++ I+ Q +
Sbjct: 208 -------------KYYRQQIQSAPPTEGSLFAPTNHLDLIKVIQ-------------KQY 241
Query: 192 LPAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL- 248
LPA++F+F+R+ C D A + N L+ E +VE A L+ F P++ P+ + L
Sbjct: 242 LPALYFVFSRKQCADKASELAYLTNYLNPQEKRQVEDAFLEHFG---PESDWYPSTRLLR 298
Query: 249 ---LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+KG+A HHAG +P K +EELF + L+ V++ TET + GIN P R+ +L+K
Sbjct: 299 RLAVKGIAFHHAGLMPSQKVLVEELFLKRLIHVLYCTETFSVGINYPVRSVCFDTLNKFD 358
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 359 GRNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFK 418
Query: 365 ASYGMVLNLLA 375
SY VLNL A
Sbjct: 419 LSYNTVLNLQA 429
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 904
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 676 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 734
>gi|222616907|gb|EEE53039.1| hypothetical protein OsJ_35761 [Oryza sativa Japonica Group]
Length = 991
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 170/354 (48%), Gaps = 32/354 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 193 IIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVY 252
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEK K + Q + + P + +R N
Sbjct: 253 TDYRPTPLQHYVFPSGGDGLYLVVDEKSKFRE-----DSFQKGLNALVPASENDKKRENG 307
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + + + S+ + + + R P I F F++R
Sbjct: 308 KWQKGLLTG-------------------KPSEDSDIFKMVKMIIQRQYDPVILFSFSKRE 348
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + +L D+ E + +E +L D + P + +L +G+ HH+G
Sbjct: 349 CEFLAMQMAKMDLNDDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSG 408
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 409 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYI 468
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 469 QMSGRAGRRGIDQRGICILMVDEKMEPSTAKMILKGSADSLNSAFHLSYNMLLN 522
>gi|15218905|ref|NP_176185.1| RNA helicase [Arabidopsis thaliana]
gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana]
gi|51971869|dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana]
gi|332195495|gb|AEE33616.1| RNA helicase [Arabidopsis thaliana]
Length = 988
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 32/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 177 IIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY 236
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DEK K + Q S + + P + +R N
Sbjct: 237 TDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHE-----DSFQKSLNALVPTNESDKKRDNG 291
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + ++ G+ + + + R P I F F+++
Sbjct: 292 KFQKGL----VIGKLGEES---------------DIFKLVKMIIQRQYDPVILFSFSKKE 332
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A + L + E VE +L D + P + +L +G+ HH+G
Sbjct: 333 CEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSG 392
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 393 LLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYI 452
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRGID RG +L+ +L + L S F SY M+LN L
Sbjct: 453 QMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQL 508
>gi|296412548|ref|XP_002835986.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629783|emb|CAZ80143.1| unnamed protein product [Tuber melanosporum]
Length = 1195
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 174/361 (48%), Gaps = 69/361 (19%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY+++ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 404 DVEFVIFDEVHYVNNQERGVVWEEVIIMLPEHVNLILLSATVPNPYEFASWVGRTKKKDI 463
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL + A+ +++ + K+GG +
Sbjct: 464 YVISTPKRPVPLEHFIWANKAMYKIVNSEK----------------------KEGGHK-- 499
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
NI H L K ++ LPA+ F+F++
Sbjct: 500 -----------NIWVHL-VHHLKKETL-----------------------LPAVIFVFSK 524
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI----KGLLKGVAAHH 256
+ C+ V L + ++ E S + + + K L P+ P I + L +G+A HH
Sbjct: 525 KRCEENVDALSAVDFSNQTEKSAIHMIIEKSVARLKPEDRLLPQILRMRELLGRGLAVHH 584
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
G LPI K +E LF + LVKV+FATET A G+N+P RT V S K L +E
Sbjct: 585 GGLLPIVKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGKSFRDLHPDE 644
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNL 373
QMAGRAGRRG+D RG +V++ +P + A L L L SQF +Y M+LNL
Sbjct: 645 YIQMAGRAGRRGLDERG-IVIIISPMDEAPPAATLKHMLLGQPTRLQSQFRLTYNMILNL 703
Query: 374 L 374
Sbjct: 704 F 704
>gi|363754569|ref|XP_003647500.1| hypothetical protein Ecym_6303 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891137|gb|AET40683.1| hypothetical protein Ecym_6303 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1075
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 173/356 (48%), Gaps = 28/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH + ++
Sbjct: 261 VVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 320
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEKG +S S
Sbjct: 321 TDFRPTPLQHYLFPAHGDGIHLVVDEKGAFREENFQKAMASIS----------------S 364
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ D NS N GQ + + + +++ +W + P I F F++R
Sbjct: 365 QTGDDPNSVNSKGGKGQ-TFKGGAAKGDSKGDIYKIVKMIWKKKYN---PVIVFSFSKRD 420
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + + E + K L P+ RE P IK LL +G+ HH+G
Sbjct: 421 CEELALKMSKLDFNSDDEKDSLAKIFKNAIDLLPETDRELPQIKHLLPLLKRGIGIHHSG 480
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++ E
Sbjct: 481 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGEYI 540
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 541 QMSGRAGRRGLDDRGVVIMMLDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 596
>gi|260946459|ref|XP_002617527.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
gi|238849381|gb|EEQ38845.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
Length = 1066
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 182/362 (50%), Gaps = 41/362 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 254 VIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEWIVKIHNQPCHVVY 313
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
+ RP PL Y L P + G H L E+ G R N +K
Sbjct: 314 TDFRPTPLQHY------LFPAAGD-GIH-----------LVVDEM-----GTFREENFQK 350
Query: 146 HADMNSNNI------VTSFGQH--QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
SNNI S G+ Q K N +S + +++ ++ R P I F
Sbjct: 351 AMSSISNNIGDDPAATESRGKKNGQTFKGG-NKDGKSDIYKIVKMIYMKRYN---PVIVF 406
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 252
F++R C++ + + ++ E S + L P+ RE P IK +L +G+
Sbjct: 407 SFSKRDCESLALKMSKLDFNNDDERSALTKIFDNAISLLPEGDRELPQIKNILPLLRRGI 466
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G +
Sbjct: 467 GIHHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWV 526
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
+ E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LN
Sbjct: 527 SGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 586
Query: 373 LL 374
L+
Sbjct: 587 LM 588
>gi|346324289|gb|EGX93886.1| ATP-dependent RNA helicase DOB1 [Cordyceps militaris CM01]
Length = 1093
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 207/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 269 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 328
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEKG + + + EV+ K N+
Sbjct: 329 TDFRPTPLQNYFYPAGGSGARIVVDEKGN-----FNEDNFNIVMKEVEEKKGADPNDINA 383
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ N T G + IR + +R + P I F F++R
Sbjct: 384 KQTG--KGKNKKTHKGGSDDGSDMSKIIRMT-----------IR-KSFNPVIVFNFSKRE 429
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + +L D+ E + V + R+ P IK LL +G+ HH+G
Sbjct: 430 CENMAISISKLSLNDDSEKAMVNKVFHSAIESLSEQDRDLPQIKNLLPLLVRGIGVHHSG 489
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V S ++K R LTS+E
Sbjct: 490 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFSQITKWDGVKRRPLTSSEYV 549
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 550 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGQQDRLNSAFYLGYNMILNLL---R 606
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D T
Sbjct: 607 IEAISPEF-----------------MLERCFHQFQNAASVPSLERELMALQQERDGAT-- 647
Query: 439 ISDDA 443
I D+A
Sbjct: 648 IPDEA 652
>gi|402219586|gb|EJT99659.1| antiviral helicase [Dacryopinax sp. DJM-731 SS1]
Length = 1000
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 180/362 (49%), Gaps = 37/362 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V + LSAT+ NA E A WI ++H + ++
Sbjct: 180 VIFDEIHYMRDKERGVVWEETIILLPHKVHFVFLSATIPNALEFAQWISKLHNQPCHVVY 239
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD---GGSRR 140
+ RP PL Y + + +++EK + ++ ++ D G R+
Sbjct: 240 TDFRPTPLQHYLYPAGSNGIFLVVNEKSEFKEDNFQRAMAAIADAKGDDPSDPNAGSGRK 299
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
S+K D G S++ I+ + + + + P I F FN
Sbjct: 300 GKSKKGVDR---------GMCYSSQSDIHKLVK-----------MISQKGYGPVIVFSFN 339
Query: 201 RRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAA 254
+R C+A + D N DE M E E+ K L + + P I+ LL +G+
Sbjct: 340 KRECEALAMAISKLDFNTDDEANMVE-EVYKKAINALTEEDRKLPQIQHLLPLLKRGIGV 398
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K +E LFQ L+KV+FATET + G+NMPART V +++ K L+S
Sbjct: 399 HHGGLLPILKEVVEVLFQEALIKVLFATETFSIGLNMPARTVVFTTVRKYDGREFRSLSS 458
Query: 315 NELFQMAGRAGRRGIDNRGHVV-LVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 372
E QM+GRAGRRG+D+RG VV +V E A K + G + L S F Y MVLN
Sbjct: 459 GEYIQMSGRAGRRGLDDRGIVVMMVDEKLEPA--VAKNMVKGEADRLNSAFHLGYNMVLN 516
Query: 373 LL 374
L+
Sbjct: 517 LM 518
>gi|403416970|emb|CCM03670.1| predicted protein [Fibroporia radiculosa]
Length = 1137
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 173/383 (45%), Gaps = 76/383 (19%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+ K
Sbjct: 332 DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDI 391
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKLSLNYLQLSTSEV 130
+I++++RPVPL Y L ++D + + + RK V
Sbjct: 392 YVISTAKRPVPLEHYLYAGRDLHKVVDANRSFLTQGYKDAAEALRRKQDKEREAAGLPPV 451
Query: 131 K----------------PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174
+ P GG R + A + +F HQ KN
Sbjct: 452 QRLGARAAAPQRGQRGGPAGRGGQRGSAPARGAPVARGGSARTF--HQPDKN-------- 501
Query: 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI 234
+ L +LR + +LP + F +++ C+ L + +L E KR
Sbjct: 502 ---LYVHLLGNLRKKSLLPVVVFTLSKKRCEENASTLTNADLCTSVE--------KRI-- 548
Query: 235 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
HH G LPI K +E LF RGLVKV+FATET A G+NMPA+
Sbjct: 549 --------------------HHGGLLPIVKEVVEILFARGLVKVLFATETFAMGVNMPAK 588
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKL 351
V S + K + + E QMAGRAGRRG+D+ G VV+V P +GA + +
Sbjct: 589 CVVFSGIRKHDGRSFRDILAGEYTQMAGRAGRRGLDSTGTVVIVANDDVPEQGALQ--NM 646
Query: 352 LFAGVEPLVSQFTASYGMVLNLL 374
+ L SQF +Y M+LNLL
Sbjct: 647 ILGTPSKLQSQFRLTYNMILNLL 669
>gi|256371712|ref|YP_003109536.1| DEAD/DEAH box helicase domain-containing protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008296|gb|ACU53863.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
DSM 10331]
Length = 815
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 173/360 (48%), Gaps = 62/360 (17%)
Query: 33 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 92
HYL + RG+VWEE+II+ P+ V+++ LSATV+N E AGW+ + G T ++ ++ RPVP
Sbjct: 118 HYLQNPYRGSVWEEVIIHLPRRVRLVSLSATVSNVAEFAGWLAAVRGTTRVVEATHRPVP 177
Query: 93 LT--WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMN 150
L + ++ + + P+ P GG R + + A ++
Sbjct: 178 LEHRYLYTPRRSETPV-----------------------AIPVLVGG---RENPQGAQLD 211
Query: 151 SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY 210
+ S + L +++ I ++++ L H LPAI FIF+R GC+ A
Sbjct: 212 PPWLARSRYRDGLRARTVHRI------ELVEFLAH---EGDLPAIVFIFSRAGCERA--- 259
Query: 211 LEDCNLLDECEMSEVELALKRFRILYPDAVRE----------------PAIKGLLKGVAA 254
DE S + L R+ V E P + GL G+A
Sbjct: 260 ------RDEVVASGIRLTTAAERVAIRRIVDERLDGLAERDLAAVGFAPFLAGLEAGIAP 313
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG +P ++ +E F+R LVKVVFATETL+ GINMPAR+ V+ L K L
Sbjct: 314 HHAGMIPPFREVVEACFERALVKVVFATETLSLGINMPARSVVIERLVKFDGESHQLLKP 373
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E Q AGRAGRRGID RG +V P + ++ A P+ S F +Y M NL+
Sbjct: 374 GEYTQFAGRAGRRGIDERGTSYVVWGPQVAFSDVAHVVRADFYPITSSFRPTYNMAANLV 433
>gi|320162936|gb|EFW39835.1| SKIV2L2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 997
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 174/357 (48%), Gaps = 25/357 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DEVHY+ D RG VWEE +I P V + LSAT+ NA E A WI +H + ++
Sbjct: 187 VIFDEVHYMRDKERGVVWEETMILLPDNVHYVFLSATIPNAREFAQWICHLHRQPCHVVY 246
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRRRN 142
+S RP PL Y L ++DEKG+ + + L+ T E GS +N
Sbjct: 247 TSFRPTPLQHYIFPGGGEGLYLVVDEKGEFRDDNFAKAMAILADTPEANALAASGSSNKN 306
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
S+ + G + K V ++D R P I F F++R
Sbjct: 307 SKGGPGGKRKGAGGTGGPSDIFK---------IVKMIMD-------RSYQPVIVFSFSKR 350
Query: 203 GCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+ + + ++ E V E+ L D + P + +L +G+ HH+
Sbjct: 351 ECEEYALQMSKLDFNNDAEKKLVDEVFSNAIDSLSEDDRKLPQVDNILPLLRRGIGIHHS 410
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +S+ K ++S E
Sbjct: 411 GLLPILKEVIEILFQEGLLKALFATETFSMGLNMPAKTVVFTSVRKFDGKDFRWVSSGEY 470
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+L+ LL +PL S F SY M+LNLL
Sbjct: 471 IQMSGRAGRRGLDDRGIVILMVDEKMEPAVAKNLLKGEADPLNSAFYLSYNMILNLL 527
>gi|301107962|ref|XP_002903063.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098181|gb|EEY56233.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 1049
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 181/387 (46%), Gaps = 31/387 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH + ++
Sbjct: 238 VIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPCHVVY 297
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + L ++DEKGK LS S + S N+
Sbjct: 298 TDYRPTPLQHYLFPAGGSGLHLVVDEKGKFREDNFQKAIATLSASTDDAAAELASYGSNT 357
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ SN K + V + + R P I F F++R
Sbjct: 358 KRRKAQKSN-----------PKKKVGT-------DVFRIVKLIMERQYDPVIIFSFSKRE 399
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+A + + E E V+ K D R P + +L +G+ HH G
Sbjct: 400 CEAYALLMSKLDFNTEEEKQSVDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGIHHGG 459
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LF GL+K +FATET + G+NMPA+T V ++ K +T+ E
Sbjct: 460 LLPILKEVIEILFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITAGEYI 519
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL---- 374
QM+GRAGRR +D RG V+ + + + +L+ +PL S F Y M+LNL+
Sbjct: 520 QMSGRAGRRSLDARGIVIQMLSEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLMRVED 579
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEA 401
A + M + + QA +LEEA
Sbjct: 580 ADPEYM-IKQSFHQFQNEQAAPALEEA 605
>gi|392394063|ref|YP_006430665.1| superfamily II RNA helicase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525141|gb|AFM00872.1| superfamily II RNA helicase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 750
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 59/371 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++++ L V I+ DE+H+L+D RGTVWEE II P ++++ LSAT+ANA +L W
Sbjct: 109 VITNDPALESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATIANAQQLVDW 168
Query: 74 IGQIHGK-TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 131
IG I + LI +RR VPL +Y FS T L+ NY +L
Sbjct: 169 IGTIRQEDVALIQENRRIVPLEYYYFSRDTGLV----------------NYEKLW----- 207
Query: 132 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
K+ + ++ G N ++ I+ Q +
Sbjct: 208 -------------KYYRQRIQSTQSTEGSLFTPTNHLDLIKVIQ-------------KQY 241
Query: 192 LPAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL- 248
LPA++F+F+R+ C D A + N L+ E +VE A L+ F ++ P+ + L
Sbjct: 242 LPALYFVFSRKQCADKASELALITNYLNPQEKKQVEDAFLEHFG---EESEWSPSTRLLR 298
Query: 249 ---LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
+KG+A HHAG LP K +EELF + L+ V++ TET + GIN P R+ +L+K
Sbjct: 299 RLTVKGIAFHHAGLLPSQKVLVEELFLKRLIHVLYCTETFSVGINYPVRSVCFDTLNKFD 358
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 359 GRNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFK 418
Query: 365 ASYGMVLNLLA 375
SY VLNL A
Sbjct: 419 LSYNTVLNLQA 429
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI---PKLPDVDQRLQ 904
D + + +V +W+ GL++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 676 DPRVTVIVYSWSQGLSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 734
>gi|328353048|emb|CCA39446.1| ATP-dependent RNA helicase DOB1 [Komagataella pastoris CBS 7435]
Length = 1064
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 182/358 (50%), Gaps = 34/358 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D +RG VWEE II P +V + LSAT+ NA E A WI IH + ++
Sbjct: 253 VIFDEVHYMRDKARGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICTIHSQPCHVVY 312
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL Y + + ++DEK + N + +++ + + E +G ++
Sbjct: 313 TDFRPTPLQHYLFPAGGDGIHLVVDEKSNFREENFQKAMSTISDKSGEDSGAVNGKGKKG 372
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
S K NS +S + +++ +W + P I F F++
Sbjct: 373 ESFKGGPNNS---------------------KSDIYKIVKMIW---IKKYNPVIVFSFSK 408
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
R C++ + + + E + + + L PDA ++ P IK +L +G+ HH
Sbjct: 409 RDCESLALKMSKLDFNTDEERTALTKIFENAIGLLPDADKDLPQIKHILPLLRRGIGIHH 468
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 469 SGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGE 528
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 529 YIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
>gi|224090560|ref|XP_002186759.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Taeniopygia
guttata]
Length = 1035
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 184/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + ++
Sbjct: 242 VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVY 301
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G + +
Sbjct: 302 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGN 353
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 354 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 391
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 392 CEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 450
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + +S SK ++S E
Sbjct: 451 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEY 510
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 511 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 566
Query: 374 L 374
L
Sbjct: 567 L 567
>gi|361127209|gb|EHK99185.1| putative Uncharacterized helicase C6F12.16c [Glarea lozoyensis
74030]
Length = 1078
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 208/426 (48%), Gaps = 49/426 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D SRG VWEE II P +V+ + LSAT+ NA + A WI + H + ++
Sbjct: 266 VVFDEIHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHQQPCHIVY 325
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF A + ++DEKG + Q + + ++ K N+
Sbjct: 326 TDFRPTPLQHYFFPAGADGIHLIVDEKGNFRE-----DNFQKAMATIEEKKGSDPSDINA 380
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
R+ N T+ G ++ + + +R + L H P I F F++R
Sbjct: 381 RQKG--RGKNKKTNTGGNKDTSDIYKIVR-------MIMLKHYN-----PVIVFSFSKRE 426
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+A + D+ E + V + L + P I+ +L +G+ HH+G
Sbjct: 427 CEAYALQMSTMAFNDDSEKAMVSKVFESAIESLSEEDKTLPQIQHILPLLRRGIGVHHSG 486
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K + + LT +E
Sbjct: 487 LLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVQKFDGTSQRYLTPSEFV 546
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL+ +
Sbjct: 547 QMSGRAGRRGLDDRGIVIMMINDKMDPPTAKEIVRGEQDKLNSAFYLGYNMILNLM---R 603
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
V +S E ++E F + ++ + + +L +Q E D + E
Sbjct: 604 VEGISPEF-----------------MLEHCFYQFQNTSGVSGLEKDLHDLQIERD--SVE 644
Query: 439 ISDDAI 444
I D+AI
Sbjct: 645 IPDEAI 650
>gi|341038500|gb|EGS23492.1| ATP dependent RNA helicase (dob1)-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 1097
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 210/429 (48%), Gaps = 54/429 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 272 VIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAYQFAEWIAKIHRQACHVVY 331
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEKG N+ Q + S ++ K S N+
Sbjct: 332 TDFRPTPLQNYFFPAGGKGIYLIVDEKGNFKEH----NFNQ-AMSAIEQSKGADSADPNA 386
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
R + I T G+ K+ I I + + ++ P I F F++R
Sbjct: 387 RMKGRGKNKRIHT--GEATDGKSDIAKIIKLII-----------KKNFQPVIVFNFSKRE 433
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL----KGVAAH 255
C+ Q + L E EL F L D + P I +L KG+ H
Sbjct: 434 CE---QLALATSSLKFNSPQEEELVNSVFGNAIGQLSEDDRQLPQISNILPLLRKGIGVH 490
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ GL+KV+FATET + G+NMPART V S ++K R LT +
Sbjct: 491 HSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFSQVTKWDGKTRRPLTPS 550
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
E QMAGRAGRRG+D+RG V+++ E ++ + L S F Y M+LNLL
Sbjct: 551 EYIQMAGRAGRRGLDDRGIVIMMVDEKLEPEVARSVVVGQQDRLNSAFHLGYNMILNLL- 609
Query: 376 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 435
++ +S E ++E+ F + ++ + + EL +Q+E D +
Sbjct: 610 --RIEAISPEY-----------------MLERCFFQFQTAHSIPQLERELAALQQERDSM 650
Query: 436 TSEISDDAI 444
I D+A+
Sbjct: 651 I--IPDEAL 657
>gi|224129500|ref|XP_002328732.1| predicted protein [Populus trichocarpa]
gi|222839030|gb|EEE77381.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 190/407 (46%), Gaps = 44/407 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 192 IIFDEVHYMRDRERGVVWEESILMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY 251
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEK K + Q + + + P +G +R N
Sbjct: 252 TDYRPTPLQHYIFPSGGEGLYLVVDEKAKFRE-----DSFQKAVNALVPKAEGEKKRENG 306
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ +N V+ G+ + I R Q P I F F++R
Sbjct: 307 KWQKGLN----VSRLGEESDIFKMVKMIIRRQYD---------------PVILFSFSKRE 347
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPA-------------IKGLL 249
C+ + +L + E + +E +L D + P + L
Sbjct: 348 CEFLAMQMAKMDLNQDDEKANIETIFWSAMDMLSDDDKKLPQASCPPLLLCVSNMLPLLK 407
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K
Sbjct: 408 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF 467
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L+S E QM+GRAGRRGID+RG +L+ +L + L S F SY M
Sbjct: 468 RWLSSGEYIQMSGRAGRRGIDDRGVCILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNM 527
Query: 370 VLNLLA---GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
+LN + G L N +A +A LE+ K++E+ + V
Sbjct: 528 LLNQMRCEDGDLENLLRNSFFQFQADRALPDLEKQAKVLEEERNSMV 574
>gi|190348463|gb|EDK40919.2| hypothetical protein PGUG_05017 [Meyerozyma guilliermondii ATCC
6260]
Length = 1060
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 177/357 (49%), Gaps = 32/357 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V + LSAT+ NA + A WI IH + ++
Sbjct: 249 VVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMQFAEWIVDIHAQPCHVVY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRRRN 142
+ RP PL Y ++ + ++DEKG +S S P D
Sbjct: 309 TDFRPTPLQHYLFPASGDGIHLVVDEKGTFREENFQKAMASISDNSGDDPASD------- 361
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
TS G+ + +S + +++ ++ R P I F F++R
Sbjct: 362 -------------TSRGKKGQTYKGGQKDGKSDIYKIVKMIYMKRYN---PVIVFSFSKR 405
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 257
C++ + + ++ E + L P++ +E P IK +L +G+ HH+
Sbjct: 406 DCESLALKMSKLDFNNDEERDALTQIFNNAISLLPESDKELPQIKNILPLLKRGIGIHHS 465
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 466 GLLPILKEIIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEY 525
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 526 IQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 582
>gi|325182407|emb|CCA16860.1| mCG15924 putative [Albugo laibachii Nc14]
Length = 1436
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 27/365 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 81
D++ ++ DE+HY++D RG VWEE+II P V ++ LSAT N E + WIG+I K
Sbjct: 539 DIEWVIFDEIHYINDSERGAVWEEVIIMLPYHVGMVFLSATTPNHLEFSDWIGRIKQKKI 598
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
++++ RP+PL + T +LD G+H +L + + ++ G +
Sbjct: 599 HVVSTLHRPIPLQHHIYTNKKFFKILD--GEHAKEGFNLKEYKAAQGLLR----GETPND 652
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
N +K A ++ S H +S ++ ++ V L+++ +LPA+ F F++
Sbjct: 653 NKQKDAKRSNRGGQPSRSVHSSRASSGDSSDWTKFINV------LQTKSLLPAVVFAFSK 706
Query: 202 RGCDAAVQYLEDCNLL-DECEMSEVELALK---RFRILYPDAVRE-P---AIKGLL-KGV 252
R C + + L + + + E S++ + L+ + R+ D RE P +IK +L +G+
Sbjct: 707 RVCQESAEKLRNFDFCANSTERSQIHVFLEHSIKQRLQGSD--RELPQVLSIKSMLQRGI 764
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HH G LPI K +E LF RGLV+V+FATET A G+NMPART V + + K +L
Sbjct: 765 GIHHGGLLPILKELVEILFARGLVRVLFATETFAMGVNMPARTVVFNGIHKHDGKVYREL 824
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
E QMAGRAGRRG+D G VV+ + +L L SQF + M
Sbjct: 825 LPGEYTQMAGRAGRRGLDTVGTVVIPCWQEANLPDLSLLQSMLTGSALRLTSQFRLTSNM 884
Query: 370 VLNLL 374
+L+LL
Sbjct: 885 ILSLL 889
>gi|413953570|gb|AFW86219.1| hypothetical protein ZEAMMB73_184778 [Zea mays]
Length = 1004
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 190/400 (47%), Gaps = 50/400 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG----QIHGKT- 81
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ Q+H +
Sbjct: 192 VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVCSQVHKQPC 251
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y S L ++DEKGK + Q + + + P D +
Sbjct: 252 HIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPASDSAKK 306
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ N ++ + ++ S S+ + + + R P I F F
Sbjct: 307 KENGKRQ-------------KFTMAGTS------SEESDIFKMVKMIIQRQYDPVILFSF 347
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAA 254
++R C+ + +L ++ E + +E +L D + P + +L +G+
Sbjct: 348 SKRECEFLAMQMAKMDLNEDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGV 407
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S
Sbjct: 408 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSS 467
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN +
Sbjct: 468 GEYIQMSGRAGRRGIDLRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQM 527
Query: 375 AGAKVMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 407
S + D K L QA RSL + K +++
Sbjct: 528 R-------SEDGDPEKLLRHSFYQFQADRSLPDLEKQIKE 560
>gi|405973895|gb|EKC38584.1| Superkiller viralicidic activity 2-like 2 [Crassostrea gigas]
Length = 1025
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 175/358 (48%), Gaps = 41/358 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + ++
Sbjct: 230 VIFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHHQPCHVVY 289
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL Y + + ++DE G + N +++ L+ + K + G RR
Sbjct: 290 TDYRPTPLQHYIFPAGSNGIYMVVDENGEFREENFSTAMSVLRDAGGAAKGDQRG---RR 346
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
K A+ N NIV + R+ P I F F++
Sbjct: 347 GGFKAAESNCFNIVKM----------------------------IMERNFAPVIVFSFSK 378
Query: 202 RGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAAHH 256
+ C+A + N E E + V E+ L D + P ++ +L KG+ HH
Sbjct: 379 KDCEAYALQMSKLNFNSEEEKALVDEVFNNAIDNLSDDDKKLPQVEHVLPLLRKGIGVHH 438
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LP+ K IE LF GL+K +FATET + G+NMPART + ++ K +TS E
Sbjct: 439 SGLLPLLKETIEILFSEGLIKALFATETFSMGLNMPARTVLFTAARKFDGKDFRWVTSGE 498
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRGID+RG V+L+ +++ +PL S F +Y MVLNLL
Sbjct: 499 YIQMSGRAGRRGIDDRGIVILMVDEKISPSVGKQIVKGQADPLNSAFHLTYNMVLNLL 556
>gi|156392405|ref|XP_001636039.1| predicted protein [Nematostella vectensis]
gi|156223138|gb|EDO43976.1| predicted protein [Nematostella vectensis]
Length = 1031
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 175/359 (48%), Gaps = 45/359 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + ++
Sbjct: 239 VVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIVHLHKQPCHVVY 298
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL Y + L ++DEKG + N + ++ +++ + G R R
Sbjct: 299 TDFRPTPLQHYIYPAGGDGLFLVVDEKGDFREENFQKAMGVIRVGGGD-----PGAQRGR 353
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
N+ IV + R+ P I F F++
Sbjct: 354 KGGTKGPSNTFKIVK----------------------------MIMERNFQPVIIFSFSK 385
Query: 202 RGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAH 255
+ C+A A+Q + D N E + E E+ L + + P ++ +L +G+ H
Sbjct: 386 KECEAYALQMSKLDFNTAQEKTLVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIH 444
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LF GL+K +FATET A G+NMPART V S+ K +TS
Sbjct: 445 HSGLLPILKETIEILFSEGLIKALFATETFALGLNMPARTVVFSNARKFDGKDFRFITSG 504
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG+D RG V+L+ G + LL +PL S F +Y MVLNLL
Sbjct: 505 EYIQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLL 563
>gi|326502430|dbj|BAJ95278.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1004
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 181/364 (49%), Gaps = 29/364 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
+V ++ DE+HY+ D RG VWEE I++ P ++++ LSAT++NA E A WI +H +
Sbjct: 190 EVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPC 249
Query: 82 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y + L ++DE G+ N+L+L + K
Sbjct: 250 HVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFRED----NFLKLQDTFAK-----QPS 300
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ + +K ++ + G NA S + +++ + R P I F F
Sbjct: 301 QLDGKKSGGPKASGRIAKGG---------NASGTSDIYRIVKMIME---RKFQPVIIFSF 348
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 254
+RR C+ + + E E +E + + R PAI+ +L +G+A
Sbjct: 349 SRRECEHHAMSMSKLDFNTEEEKDSIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAV 408
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K + S
Sbjct: 409 HHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRFIGS 468
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG D RG V++ ++ PL+S F SY +LNLL
Sbjct: 469 GEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLL 528
Query: 375 AGAK 378
+ A+
Sbjct: 529 SRAE 532
>gi|327262837|ref|XP_003216230.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Anolis
carolinensis]
Length = 1039
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 179/357 (50%), Gaps = 40/357 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 246 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 305
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 306 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 357
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 358 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 395
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 396 CEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 454
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + +S K +TS E
Sbjct: 455 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEY 514
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+L+ +LL +PL S F +Y MVLNLL
Sbjct: 515 IQMSGRAGRRGMDDRGIVILMVDEKMSPSVGKQLLKGSADPLNSAFHLTYNMVLNLL 571
>gi|145341527|ref|XP_001415858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576081|gb|ABO94150.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1175
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 185/390 (47%), Gaps = 50/390 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 319 DVEWVIFDEVHYVNDAERGVVWEEVIIMLPAHVGLILLSATVPNVFEFADWVGRTKRKKI 378
Query: 83 LITSSR-RPVPL--TWYFST-----------KTALLPLLDEKGKHMNRKLSLNYLQLSTS 128
+T ++ RPVPL YF A LP + ++K L T+
Sbjct: 379 FVTGTKKRPVPLEHCIYFGGDKEKDFYKVGEHEAFLPTGYKVASDAHKK---KLLGNKTT 435
Query: 129 EVKPYKDGGSRR---------------RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
P +++ R R + N+ G S NA R
Sbjct: 436 TATPANAQAAKQTALAGRGGRGGAQQGRGGRVGGRGGTQNVTGGRG----SSFGPNAGRD 491
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELAL 229
+ ++ + +L R++LP + F F+++ CD V L +L E E+ E AL
Sbjct: 492 KNM--WVELIRNLERRELLPMVVFAFSKKRCDTLVDSLTSMDLTSSSEKHEIHVFCERAL 549
Query: 230 KRFRIL---YPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 285
R + P +R ++ LL+ G+ HHAG LPI K +E LF RGL+KV++ TET
Sbjct: 550 SRLSVTDRKLPQVLR---VRELLRRGLGVHHAGLLPIVKEIVEMLFCRGLLKVLYCTETF 606
Query: 286 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-TPYEG 344
A G+N PAR SL K L S E QMAGRAGRRG+D G V+L +
Sbjct: 607 AMGVNAPARCVCFQSLRKHDGQDFRGLLSGEYTQMAGRAGRRGLDTVGTVILAAWENFPP 666
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E +LL L SQF +YGM+LNL+
Sbjct: 667 ELELRQLLSGQATKLQSQFRLTYGMILNLM 696
>gi|61098430|ref|NP_001012962.1| superkiller viralicidic activity 2-like 2 [Gallus gallus]
gi|53126871|emb|CAG30992.1| hypothetical protein RCJMB04_1h14 [Gallus gallus]
Length = 1029
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 183/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 236 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 295
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 296 TDYRPTPLQHYIFPAGGDGLRLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 347
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 348 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 385
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 386 CEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 444
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + +S SK ++S E
Sbjct: 445 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEY 504
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 505 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 560
Query: 374 L 374
L
Sbjct: 561 L 561
>gi|357157387|ref|XP_003577781.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Brachypodium distachyon]
Length = 1005
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 178/365 (48%), Gaps = 31/365 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE I++ P ++++ LSAT++NA E A WI +H +
Sbjct: 191 EVGWVIFDEIHYMKDRERGVVWEESIVFLPTAIKMVFLSATMSNATEFAEWICNLHKQPC 250
Query: 82 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK-PYKDGGS 138
++ + RP PL Y + L ++DE G+ N+L+L + K P + G
Sbjct: 251 HVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFRED----NFLKLQDTFAKQPSQQDG- 305
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RN G + S + S + + + R P I F
Sbjct: 306 --RNG---------------GGPKASGRIAKGGKASGTSDIYRIVKMIMERKFQPVIIFS 348
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F+RR C+ + + E E +E + + R PAI+ +L +G+A
Sbjct: 349 FSRRECEHHAMSMSKLDFNTEEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIA 408
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K +
Sbjct: 409 VHHSGLLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIA 468
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D RG V++ ++ PL+S F SY +LNL
Sbjct: 469 SGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNL 528
Query: 374 LAGAK 378
L+ A+
Sbjct: 529 LSRAE 533
>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis
sativus]
Length = 1014
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 184/366 (50%), Gaps = 30/366 (8%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI IH +
Sbjct: 204 LKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYIHKQ 263
Query: 81 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 137
++ + RP PL Y + L ++DE + N+L+L + K + G
Sbjct: 264 PCHVVYTDFRPTPLQHYVFPAGGNGLYLVVDENEQFRED----NFLKLQDTFAKQKQIVG 319
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
R N + S+ + G +A S + +++ + R+ P I F
Sbjct: 320 HRTANGK------SSGRIAKGG---------SASGGSDIYKIVKMIM---ERNFQPVIVF 361
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 252
F+RR C+ + + + E VE + + + RE PAI+ +L +G+
Sbjct: 362 SFSRRECEQHAMSMSKLDFNTQEEKDMVEHIFRNAILCLNEEDRELPAIELMLPLLQRGI 421
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V ++ K +
Sbjct: 422 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRFI 481
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
S E QM+GRAGRRG D RG +++ ++ PLVS F SY +LN
Sbjct: 482 GSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMGTIKDMILGKPAPLVSTFRLSYYSILN 541
Query: 373 LLAGAK 378
L++ A+
Sbjct: 542 LMSRAE 547
>gi|366988167|ref|XP_003673850.1| hypothetical protein NCAS_0A09110 [Naumovozyma castellii CBS 4309]
gi|342299713|emb|CCC67469.1| hypothetical protein NCAS_0A09110 [Naumovozyma castellii CBS 4309]
Length = 1064
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 172/356 (48%), Gaps = 28/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH + ++
Sbjct: 251 VVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHTQPCHIVY 310
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
++ RP PL Y + + ++DEK +ST E
Sbjct: 311 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISTQE-------------- 356
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
D NS N GQ + + + +++ +W + P I F F++R
Sbjct: 357 --GDDPNSINSRGKKGQ-TFKGGAAKGDAKGDIYKIVKMIWKKKYN---PVIVFSFSKRD 410
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + E E + L P+ RE P IK +L +G+ HH+G
Sbjct: 411 CEELALKMSKLDFNSEDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 470
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++ E
Sbjct: 471 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 530
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 531 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
>gi|320580337|gb|EFW94560.1| Dead-box family helicase [Ogataea parapolymorpha DL-1]
Length = 1045
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 184/360 (51%), Gaps = 40/360 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D SRG VWEE II P V + LSAT+ NA E A WI ++H + ++
Sbjct: 237 VIFDEVHYMRDKSRGVVWEETIILLPDNVHHVFLSATIPNAMEFAEWICKVHNQPCHVVY 296
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
+ RP PL Y L P D +G H L E G R N +K
Sbjct: 297 TDFRPTPLQHY------LFPA-DGEGIH-----------LVVDE-----KGTFREENFQK 333
Query: 146 HADMNSNNIVTSFG--QHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
SN + G + + K+ ++ +S + +++ +W + P I F F++
Sbjct: 334 AMASISNKMGDDPGAIETKNGKSWKGGVKEGKSDIYKIVKMIWMKKYN---PVIVFSFSK 390
Query: 202 RGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAH 255
R C+A + D N +E EM ++ IL D P IK +L +G+ H
Sbjct: 391 RDCEALAMKMSKLDFNTDEEREML-TKIFNNAISILSDDDKELPQIKHILPLLRRGIGIH 449
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K +G ++
Sbjct: 450 HSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGNGFRWVSGG 509
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG+D+RG +V++ + + K + GV + L S F Y M+LNL+
Sbjct: 510 EYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGVADRLDSAFHLGYNMILNLM 568
>gi|325290288|ref|YP_004266469.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324965689|gb|ADY56468.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 749
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 182/370 (49%), Gaps = 56/370 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L DV ++ DE+H+L+D RGTVWEE II P ++I+ LSAT+ANA EL W
Sbjct: 107 VITEDPELNDVSYVIFDEIHWLNDEDRGTVWEESIILTPMHIKILGLSATIANAAELTQW 166
Query: 74 IGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I G+ L+ +R VPL +Y+ TK + G S+ Y QL
Sbjct: 167 IESIRGEEVFLVEEQKRIVPLAYYYYTK--------DTG-------SVTYEQLIEFYTSK 211
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+ G ++ + I Q +D + ++++ L
Sbjct: 212 IRSGSNQ-----------------------------DGISLFQPTSHLDLIENIKN-GYL 241
Query: 193 PAIWFIFNRRGCDAAVQYLEDCN-LLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL- 249
PA++F+F+R+ C L + N L + S+V + L++F P+ + + L
Sbjct: 242 PALYFVFSRKQCAEKAHELANTNHFLTPLQSSKVKDFFLEQFG---PEEGWSSSTRRLFR 298
Query: 250 ---KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
KG+ HHAG LP KS +E+LF + + V++ TET + GIN P + SL K
Sbjct: 299 VCRKGIGYHHAGLLPAQKSIVEDLFLQKYIYVLYCTETFSVGINYPVKAVCFDSLRKFDG 358
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+L ++E FQM+GRAGRRGID +G+ +V Y K +EPL SQF
Sbjct: 359 RDFRELKNHEFFQMSGRAGRRGIDEKGYSFAVVDLNYLYKNTLPKFNINKLEPLSSQFKL 418
Query: 366 SYGMVLNLLA 375
SY VLNL+A
Sbjct: 419 SYNTVLNLMA 428
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
+S+ +G+ AW+ G + ++ C LD+GD+ + RRTIDLL QI K D QK
Sbjct: 674 FESRVAGITYAWSKGAEFSQIHHLCNLDEGDIIAVYRRTIDLLRQI-KEASTDPLFQKRI 732
Query: 908 VDASNVMDRPPISEL 922
+DR S L
Sbjct: 733 SGCMKKLDRDEASIL 747
>gi|408388817|gb|EKJ68496.1| hypothetical protein FPSE_11504 [Fusarium pseudograminearum CS3096]
Length = 1094
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 205/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 269 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 328
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEK + N + + N + E
Sbjct: 329 TDFRPTPLQNYFFPAGGSGARLIVDEKS-NFNEQ-NFNKVMQEVEE-------------- 372
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K AD N N N A S + ++I + P I F F++R
Sbjct: 373 KKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTI---KKKFNPVIVFNFSKRE 429
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + D+ E + V + RE P I LL +G+ HH+G
Sbjct: 430 CENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLERGIGVHHSG 489
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 490 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTSSEYI 549
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 550 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMILNLL---R 606
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D T
Sbjct: 607 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQERDSTT-- 647
Query: 439 ISDDA 443
I+D++
Sbjct: 648 IADES 652
>gi|449527177|ref|XP_004170589.1| PREDICTED: superkiller viralicidic activity 2-like 2-like, partial
[Cucumis sativus]
Length = 865
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 184/366 (50%), Gaps = 30/366 (8%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI IH +
Sbjct: 204 LKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYIHKQ 263
Query: 81 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 137
++ + RP PL Y + L ++DE + N+L+L + K + G
Sbjct: 264 PCHVVYTDFRPTPLQHYVFPAGGNGLYLVVDENEQFRED----NFLKLQDTFAKQKQIVG 319
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
R N + S+ + G +A S + +++ + R+ P I F
Sbjct: 320 HRTANGK------SSGRIAKGG---------SASGGSDIYKIVKMIM---ERNFQPVIVF 361
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 252
F+RR C+ + + + E VE + + + RE PAI+ +L +G+
Sbjct: 362 SFSRRECEQHAMSMSKLDFNTQEEKDMVEHIFRNAILCLNEEDRELPAIELMLPLLQRGI 421
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V ++ K +
Sbjct: 422 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRFI 481
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
S E QM+GRAGRRG D RG +++ ++ PLVS F SY +LN
Sbjct: 482 GSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMGTIKDMILGKPAPLVSTFRLSYYSILN 541
Query: 373 LLAGAK 378
L++ A+
Sbjct: 542 LMSRAE 547
>gi|302760191|ref|XP_002963518.1| hypothetical protein SELMODRAFT_79650 [Selaginella moellendorffii]
gi|302799609|ref|XP_002981563.1| hypothetical protein SELMODRAFT_268485 [Selaginella moellendorffii]
gi|300150729|gb|EFJ17378.1| hypothetical protein SELMODRAFT_268485 [Selaginella moellendorffii]
gi|300168786|gb|EFJ35389.1| hypothetical protein SELMODRAFT_79650 [Selaginella moellendorffii]
Length = 970
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 23/366 (6%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V +V DE+HY+ D RG VWEE II P ++++ LSAT++NA E A WI +H +
Sbjct: 148 LREVAWVVFDEIHYMRDRERGVVWEESIILLPPAIKMVFLSATMSNATEFAQWICHLHKQ 207
Query: 81 -TELITSSRRPVPLTWY-FSTK-TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 137
++ + RP PL Y F+ + L ++D+KG R + LQ S+ P
Sbjct: 208 PCHVVYTDFRPTPLQHYAFAMGGSGLYLMVDDKGHF--RDDNFAKLQQSSRNAGP----- 260
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
+S G +K S + + +++ + R M P I F
Sbjct: 261 ---DDSLAPPGRRRGGGGRRGGGRGGAKASAGV--STDIYKIVKMIM---ERSMQPVIVF 312
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 252
F+RR C+ + + + E +VE + L + P I LL +GV
Sbjct: 313 SFSRRECEQYALSVSKLDFNSDQEKMDVEHVFSNAIQCLSEEDRSLPPIHQLLPLLKRGV 372
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
A HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V ++L K +
Sbjct: 373 AFHHSGLLPILKEIVEILFQEGLVKALFATETFAMGLNMPAKTVVFTALRKWDGDAHRYM 432
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
+S E QM+GRAGRRG D RG +++ C +++ PLVS F SY +LN
Sbjct: 433 SSGEYIQMSGRAGRRGKDERGICIIMIDDQMDVSTCREMILGKPAPLVSTFRLSYYSLLN 492
Query: 373 LLAGAK 378
L++ A+
Sbjct: 493 LMSRAE 498
>gi|342886340|gb|EGU86207.1| hypothetical protein FOXB_03286 [Fusarium oxysporum Fo5176]
Length = 1094
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 204/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 267 VVFDEIHYMRDKIRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 326
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF S T ++DEK + N + + N + E
Sbjct: 327 TDFRPTPLQNYFFPSGGTGARLIVDEKS-NFNEQ-NFNKVMQEVEE-------------- 370
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K AD N N N A S + ++I + P I F F++R
Sbjct: 371 KKGADPNDPNARQKGKGKNKKTNKGGADSGSDISKIIRMTI---KKKFNPVIVFNFSKRE 427
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + D+ E + V + RE P I LL +G+ HH+G
Sbjct: 428 CENLAMNISSLSFNDDSEKAMVRKVFNSAIESLSEGDRELPQIINLLPLLERGIGVHHSG 487
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 488 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTSSEYI 547
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 548 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMILNLL---R 604
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D +
Sbjct: 605 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQERD--NTS 645
Query: 439 ISDDA 443
I+D++
Sbjct: 646 IADES 650
>gi|46109548|ref|XP_381832.1| hypothetical protein FG01656.1 [Gibberella zeae PH-1]
Length = 1094
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 206/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 269 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 328
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEK + N + + N + E
Sbjct: 329 TDFRPTPLQNYFFPAGGSGARLIVDEKS-NFNEQ-NFNKVMQEVEE-------------- 372
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K AD N N N A S + ++I + P I F F++R
Sbjct: 373 KKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTI---KKKFNPVIVFNFSKRE 429
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + D+ E + V + RE P I LL +G+ HH+G
Sbjct: 430 CENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLERGIGVHHSG 489
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 490 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTSSEYI 549
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 550 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMILNLL---R 606
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D ++
Sbjct: 607 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQERD--STS 647
Query: 439 ISDDA 443
I+D++
Sbjct: 648 IADES 652
>gi|297745957|emb|CBI16013.3| unnamed protein product [Vitis vinifera]
Length = 1082
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 180/363 (49%), Gaps = 51/363 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 247 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKQI 306
Query: 83 LIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+T +++RPVPL L + + + T + ++ G ++
Sbjct: 307 RVTGTTKRPVPLEHCIFYSGELYKICESE----------------TFLPQGRENPGRGKQ 350
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
N+ ++ S RRS+ + + L + +LP + F F++
Sbjct: 351 NNGSQSNWGS--------------------RRSEASLWLLLINKLSKKSLLPVVIFCFSK 390
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKR-FRIL------YPDAVREPAIKGLLKGVAA 254
CD + + +L E E+ + +R F L P +R ++ L +G+
Sbjct: 391 NRCDISADKMTGIDLTSSSEKHEIHVFCERAFSRLKGSDRNLPQVIRVQSL--LRRGIGV 448
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LPI K +E LF RG+VKV+F+TET A G+N PART V SL K QL
Sbjct: 449 HHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDSLRKFDGREFRQLLP 508
Query: 315 NELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
E QMAGRAGRRG+D G VV++ + P E + ++ L SQF +Y M+L
Sbjct: 509 GEYTQMAGRAGRRGLDKIGTVVVMCRDEIPDE--RDLKHVIVGSATRLASQFRLTYIMIL 566
Query: 372 NLL 374
+LL
Sbjct: 567 HLL 569
>gi|429961689|gb|ELA41234.1| hypothetical protein VICG_01723 [Vittaforma corneae ATCC 50505]
Length = 900
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 195/414 (47%), Gaps = 75/414 (18%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
I+ DEVHY+ D RG VWEE II P V+++ LSAT+ NA E A WI I + ++
Sbjct: 178 IIFDEVHYMRDRERGVVWEETIILLPGHVRMVFLSATIPNALEFAEWISYIQQQIVHVVY 237
Query: 86 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 145
+ +R +PL YF T L L+ +K H+ K +N K
Sbjct: 238 TEKRVIPLIHYFQTDD--LYLIKDKKFHL-------------------KQFMRSMQNVPK 276
Query: 146 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 205
DM+ K AI R+ P V+ F F+R+ C+
Sbjct: 277 RKDMD--------------KILQEAIERANTPAVV----------------FSFSRKECE 306
Query: 206 A-AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE--------PAIKGLL----KGV 252
AV+ +D LLDE E V + ++ +A+ P I+ +L +G+
Sbjct: 307 GYAVKIRKD--LLDEEEKDLV-------KTIFDNAIASLRQEDRNIPIIEKMLPLLQRGI 357
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HH+G LPI + +E LFQ L+KV+FATET + G+NMPA+T + +SL K + R L
Sbjct: 358 GIHHSGLLPIIREIVEILFQESLLKVLFATETFSIGLNMPAKTVIFTSLRKFDGTNRRLL 417
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
TS E QM+GRAGRRG+D G + + T + + + + L S F +Y M+LN
Sbjct: 418 TSGEFIQMSGRAGRRGLDEMGAAICILTEELTVAQVKTIFSSSADKLFSAFRLTYNMILN 477
Query: 373 LLAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQSFGNYVGSNVMLAAKDEL 425
LL + S QA +S LE+ K+V+ F + +L ++EL
Sbjct: 478 LLRVEGLDPTYVLSRSFFHFQAYKSALEQENKIVDVPFAEETELSQLLLRREEL 531
>gi|413947563|gb|AFW80212.1| hypothetical protein ZEAMMB73_030566 [Zea mays]
Length = 979
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 177/357 (49%), Gaps = 29/357 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H + ++
Sbjct: 194 VIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICSLHKQPCHVVY 253
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G+ N+ +L S KP + + +
Sbjct: 254 TDFRPTPLQHYMFPIGGSGLYLVVDENGQFRED----NFAKLQDSFAKP-----NNQLDG 304
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
RK ++ + G +A S + +++ + R P I F F+RR
Sbjct: 305 RKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIFSFSRRE 352
Query: 204 CDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHAG 258
C+ + + E E +E L + PAI+ +L +G+A HH+G
Sbjct: 353 CEHHAMSMSKLDFSTEEEKECIEQVFCNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSG 412
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K + S E
Sbjct: 413 LLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIGSGEYI 472
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
QM+GRAGRRG D RG V++ ++ PLVS F SY +LNL++
Sbjct: 473 QMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMS 529
>gi|406601717|emb|CCH46678.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 1066
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 180/356 (50%), Gaps = 29/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 254 VIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICKIHSQPCHVVY 313
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEK R+ + S S+
Sbjct: 314 TDFRPTPLQHYLFPANGDGIHLVVDEKSTF--REENFQKAMASISD-------------- 357
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
K D + + + S G+ + N +S + +++ +W + P I F F++R
Sbjct: 358 -KQGD-DPSAVDKSKGKKGQTFKGGNKDGKSDIYKIVKMIW---IKKYNPVIVFSFSKRD 412
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + E E + + P++ RE P IK +L +G+ HH+G
Sbjct: 413 CESLALKMSKLDFNTEEERDTLTKIFNNAVDVLPESDRELPQIKHILPLLRRGIGIHHSG 472
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 473 LLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYI 532
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 533 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGEADRLDSAFHLGYNMILNLM 588
>gi|194388308|dbj|BAG65538.1| unnamed protein product [Homo sapiens]
Length = 941
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 183/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 148 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 207
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 208 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 259
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++G
Sbjct: 260 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKG 297
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 298 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 356
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 357 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 416
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 417 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 472
Query: 374 L 374
L
Sbjct: 473 L 473
>gi|148907669|gb|ABR16963.1| unknown [Picea sitchensis]
Length = 884
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 178/356 (50%), Gaps = 37/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + +I
Sbjct: 73 IIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHIIY 132
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DEKG + Q + + + D G++R
Sbjct: 133 TDYRPTPLQHYLFPSGGDGLFLVVDEKGTFRE-----DSFQKAVNALGAASDNGNKRN-- 185
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
G+ Q + A + + + + R P I F F++R
Sbjct: 186 ---------------GKWQ---KGLQAGKSGEESDIFKIAKMIMQRQYDPVIVFSFSKRD 227
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+ A+Q + D N+ DE ++ + + L D + P + +L +G+ HH+
Sbjct: 228 CEILAMQMAKLDLNVEDEKKLVDT-IFWSAMDSLSDDDKKLPQVSHILPLLQRGIGVHHS 286
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K ++S E
Sbjct: 287 GLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEY 346
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 372
QM+GRAGRRG+D RG +L+ + KL+ G +PL S F SY M+LN
Sbjct: 347 IQMSGRAGRRGLDARGICILM-VDEKMEPSTAKLMVKGSADPLNSAFHLSYNMLLN 401
>gi|158521045|ref|YP_001528915.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158509871|gb|ABW66838.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 709
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 187/404 (46%), Gaps = 60/404 (14%)
Query: 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 81
D D ++LDE H+L D RG VWEE +IY P+ + I+ LSAT+ N D++A W+ I +
Sbjct: 174 LDTDFVILDEAHFLGDEDRGVVWEETMIYLPRRIPILMLSATIGNPDQIAAWLSTIRQRP 233
Query: 82 -ELITSSRRPVPL-TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RPV L + L PLL E R L YK
Sbjct: 234 CRVVKETNRPVQLYPLFLHPSGTLFPLLRESSGTGPRGL--------------YK----- 274
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
N+ + K + ++P V + L LR ++LPAI+F+
Sbjct: 275 ----------RMNDFI---------KARVQLAPAHRLPPVNEILNVLRKYNLLPAIFFMK 315
Query: 200 NRRGCDAAVQYLEDCN-LLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAA 254
+R CD A+ +D N +D +E + R P K LL + VAA
Sbjct: 316 SRADCDKALDLCDDQNRAVDPERWRWLEERIDRMVAATPYLAGH---KQLLLIRDRAVAA 372
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LP+WK +E GL+ VFAT T+AAG+N PAR+ V+ + + + L+S
Sbjct: 373 HHSGHLPVWKKAVETFMNEGLLDAVFATSTVAAGVNFPARSVVILNSDRFNGKDFLPLSS 432
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM GRAGRRG DN G V+V + + ++ A + SQ ++ MVLNLL
Sbjct: 433 IEFHQMTGRAGRRGKDNIGFAVMVPGKFMDLKHVAQVADAPASDIYSQIKINFSMVLNLL 492
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 418
LS+ D +K L L ++ L +++ NV+
Sbjct: 493 -------LSHTPDQVKTL-----LNQSFALFQRTQRGMAADNVL 524
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 705 TEEKIKRLKARSKRLTKRIEQIEPSG---WKEFLRISNVIHETRALDINTQVIFPLGETA 761
T +++K L +S L +R ++ + W +F+R + + +T D ++ G A
Sbjct: 496 TPDQVKTLLNQSFALFQRTQRGMAADNVLWDDFIRHLDFLKDTGFADEAGRLT-DDGIWA 554
Query: 762 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 821
+ +R ++ L +A R + + PA LAAV A+ V+E V + + + ++
Sbjct: 555 SNLRVDHPLMIAEGFRLSLFPEDDPALLAAVVAAFVNERQVV---DSPAVEHAAPKSLRR 611
Query: 822 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 881
V N L + F +K G E P L + + WA+ + W +++ ++GDLA
Sbjct: 612 VFNSLKHAMTPFTRHMKKRGFE-PTDLFLAPAVTMHQWATDMDWEDVVFRTGSEEGDLAN 670
Query: 882 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
L+ R D L I L D+ R ++A + +++ R P+
Sbjct: 671 LVFRAADNLRHIATLTDIFPRAAQSAREGVDLIVREPL 708
>gi|387219033|gb|AFJ69225.1| ATP-dependent RNA helicase DOB1 [Nannochloropsis gaditana CCMP526]
Length = 1061
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 176/360 (48%), Gaps = 46/360 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH + ++
Sbjct: 240 VIYDEIHYMRDKDRGVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPCHVVY 299
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y S L ++DEK SR R
Sbjct: 300 TDYRPVPLQHYIFPSGGEGLYLVVDEK---------------------------SRFRED 332
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
M + K + ++S++ +++ + RS D P I F F++R
Sbjct: 333 NFQKAMAVLQGEGGEEESGKKKKNGGKGQQSELGKIVRLIME-RSYD--PVIIFSFSKRE 389
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PAIKGLL----KGVAA 254
C+A Y + LD E E EL + F D++ E P + LL +GV
Sbjct: 390 CEA---YALKMSKLDFNEEGEKELVEQVFTNAI-DSLSEEDKTLPQVVSLLPLLKRGVGI 445
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K IE LFQ GL+K +FATET + GINMPA+T V + +K +T
Sbjct: 446 HHGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFRWVTP 505
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG D+RG V+++ + C +L+ + L S + SY M+LN+L
Sbjct: 506 GEYIQMSGRAGRRGKDDRGIVIMMMDSKMEPDVCKAILYGEPDKLYSSYHVSYNMLLNML 565
>gi|358399456|gb|EHK48799.1| hypothetical protein TRIATDRAFT_53649 [Trichoderma atroviride IMI
206040]
Length = 1037
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 209/426 (49%), Gaps = 51/426 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 214 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 273
Query: 86 SSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
+ RP PL YF K A + ++DEKG + N + N+ L +EV+ K
Sbjct: 274 TDFRPTPLQNYFYPAGGKGARM-VVDEKG-YFNEE---NF-NLVMAEVEEKKGSDPADFT 327
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
++ + + IN I R + R+ P I F F++R
Sbjct: 328 AKMKGKGKNKKTNKGGADE---GSDINKIIRMTI-----------KRNFNPVIVFNFSKR 373
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 257
+ + + N D+ E + V + + RE P I+ LL KGV HH+
Sbjct: 374 EVENMAVKISNLNFNDDSEKAMVNKVFQSAIESLSEQDRELPQIQNLLPLLQKGVGVHHS 433
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K +TS+E
Sbjct: 434 GLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVNIRPITSSEY 493
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 377
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL
Sbjct: 494 VQMAGRAGRRGLDARGVVIMMIDDKLEPDTAKQIVTGQQDRLNSAFYLGYNMILNLL--- 550
Query: 378 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
++ +S E ++E+ F + + + + + +L +Q+E D LT
Sbjct: 551 RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKDLMALQQEKDALT- 592
Query: 438 EISDDA 443
I D+A
Sbjct: 593 -IPDEA 597
>gi|308805252|ref|XP_003079938.1| ATP-dependent RNA helicase, putative (ISS) [Ostreococcus tauri]
gi|116058395|emb|CAL53584.1| ATP-dependent RNA helicase, putative (ISS) [Ostreococcus tauri]
Length = 1018
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 194/431 (45%), Gaps = 62/431 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA E A W+ + H + ++
Sbjct: 191 VIYDEIHYMRDSERGVVWEESIVLLPDMVKYVFLSATIPNAREFAEWVCKTHNQPCHIVY 250
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR--RR 141
+ RP PL Y + + ++D + + +S S GG+ R
Sbjct: 251 TDFRPTPLEHYIFPANGEGIFLVMDRQSNFRDSNFEQAVTVISDS-------GGTAAARV 303
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+R D N V + + + R+ P I F FN+
Sbjct: 304 ANRGRGDDGKNEAVNQ--------------------DIFKIIRMVVERNYDPVIVFAFNK 343
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLKGVAA 254
C+ L +L D+ E ++ AL P P + L +G+
Sbjct: 344 HECEKMANSLHKVDLCDDDEKKLIDTIYWNAMDALSEEDKRLPQVANLPNL--LRRGLGV 401
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ GL+KV+FATET++ G+NMPART V S K +G +TS
Sbjct: 402 HHSGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTVVFCSPRKFDGAGFRWITS 461
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG D+RG V+L+ +L + L S F +Y M+LNL+
Sbjct: 462 GEYIQMSGRAGRRGKDDRGLVILMMDERMDPPVAKNMLHGQSDTLDSAFRLNYAMILNLM 521
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 434
+V ES L++ SF + + + ++ +I+KE D
Sbjct: 522 ---RVEGADPES-----------------LIQSSFAQFQNDRALPGIEAKIVEIEKERDA 561
Query: 435 LTSEISDDAID 445
+ E ++A+D
Sbjct: 562 VHIE-DENAVD 571
>gi|302907162|ref|XP_003049585.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730521|gb|EEU43872.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1090
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 203/425 (47%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 265 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 324
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF + + ++DEK + +L ++
Sbjct: 325 TDFRPTPLQNYFFPAGGSGARLIVDEKSNFNEQNFNLVMQEV----------------EE 368
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K AD N N A S + ++I + P I F F++R
Sbjct: 369 KKGADPNDPTARQKGKGKNKKTNKGGADSGSDIAKIIRMTI---KKKFNPVIVFNFSKRE 425
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + D+ E + V+ + RE P I LL +G+ HH+G
Sbjct: 426 CENMAMNISSLSFNDDSEKAMVKKVFHSAIESLSEQDRELPQIVNLLPLLERGIGVHHSG 485
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R LTS+E
Sbjct: 486 LLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTSSEYI 545
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LNLL +
Sbjct: 546 QMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMILNLL---R 602
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + +L +Q+E D ++
Sbjct: 603 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKDLMSLQQERDTMS-- 643
Query: 439 ISDDA 443
I D+A
Sbjct: 644 IPDEA 648
>gi|427785387|gb|JAA58145.1| Putative cytoplasmic exosomal rna helicase ski2 dead-box
superfamily [Rhipicephalus pulchellus]
Length = 1031
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 176/364 (48%), Gaps = 52/364 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P V+ + LSAT+ NA + A WI +H + ++
Sbjct: 234 VIFDEIHYMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVY 293
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + + L ++DE G K + L + D + R
Sbjct: 294 TEYRPVPLQHYIFPAGGSGLYLVVDESGNFKEDKFNEAMALLQNAGDAAKGDSALKGRKG 353
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ N IV + RD P I F F+++
Sbjct: 354 GFKGESNCYKIVKM----------------------------IMERDYAPVIVFSFSKKE 385
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL----KGVAAH 255
C+A Y LD E +L ++ F+ L + + P ++ +L +G+A H
Sbjct: 386 CEA---YATQIARLDLTTFKEKKLVMEVFQNAMDSLSEEDQKLPQVEQVLPLLKRGIAVH 442
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LF GLVK +FATET A G+NMPART + ++ K +TS
Sbjct: 443 HSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPARTVLFTNARKFDGKDFRWVTSG 502
Query: 316 ELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGV-EPLVSQFTASYGMV 370
E QM+GRAGRRG+D+RG V+L+ +P G K + G+ +P+ S F +Y MV
Sbjct: 503 EYIQMSGRAGRRGLDDRGIVILMVDEKMSPAAG-----KDIVKGLPDPINSAFHLTYNMV 557
Query: 371 LNLL 374
LNL+
Sbjct: 558 LNLM 561
>gi|412988295|emb|CCO17631.1| predicted protein [Bathycoccus prasinos]
Length = 1503
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 184/392 (46%), Gaps = 55/392 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV+ +V DEVHY++D RG VWEE+II PK V I+ LSATV N E AGW+G+ K
Sbjct: 529 DVEWVVFDEVHYVNDRERGVVWEEVIIMLPKHVGIVMLSATVPNVREFAGWVGKTKRKKV 588
Query: 83 LITSSR-RPVPLT--WYFS------------TKTALLPLLDEKG------KHMNRKLSLN 121
IT ++ RPVPL YF K LPL +K K M K +L
Sbjct: 589 FITGTKKRPVPLEHELYFGGDDPDKDFHLVGEKEQFLPLGYQKALKAKERKDMGVKAALL 648
Query: 122 YLQ-LSTSEVKP-------YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173
Q L+ EVK GSR R ++ + + T GQ + N
Sbjct: 649 KDQGLNKQEVKKPNAGRGGGSGAGSRNRTQQREGFVKQSVKTTGSGQSTKTNTGKN---- 704
Query: 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELAL 229
Q ++ + L + LP + F F++R CD + +L E E E AL
Sbjct: 705 ----QWVELIRTLEKKLFLPMVVFAFSKRKCDLLADGITGVDLTTSKEKHETHIFCEKAL 760
Query: 230 KRF----RILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
R R L P R ++ LL +G+ HHAG LPI K +E LF RG VKV+F+TET
Sbjct: 761 SRLSPADRTL-PQVTR---VRELLSRGLGVHHAGLLPIVKEIVEMLFCRGNVKVLFSTET 816
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTP 341
A G+N PAR SL K L E QMAGRAGRRG D G V+L P
Sbjct: 817 FAMGVNAPARCVCFESLRKHDGQEFRFLLPGEYTQMAGRAGRRGKDTVGTVILSCWDNFP 876
Query: 342 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E KLL L SQF ++ M+LN+
Sbjct: 877 TENT--LRKLLVGTATKLESQFRLTFAMILNV 906
>gi|410656991|ref|YP_006909362.1| putative DNA helicase [Dehalobacter sp. DCA]
gi|410660029|ref|YP_006912400.1| putative DNA helicase [Dehalobacter sp. CF]
gi|409019346|gb|AFV01377.1| putative DNA helicase [Dehalobacter sp. DCA]
gi|409022385|gb|AFV04415.1| putative DNA helicase [Dehalobacter sp. CF]
Length = 751
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 198/425 (46%), Gaps = 67/425 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++++ L V I+ DE+H+L+D RGTVWEE II P ++I+ LSAT+ANA EL GW
Sbjct: 108 VITNDPELEHVSYIIFDEIHWLNDEDRGTVWEESIILAPPNIKILGLSATIANAAELKGW 167
Query: 74 IGQIHGKTE-LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
I I T LI +R VPL +Y+ + + D+ + +KL
Sbjct: 168 IEAIRKDTVVLIEEQQRIVPLEYYYFCQDTGIIGYDDLIRFYYQKL-------------- 213
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
K D N+ + H +I T+ + L
Sbjct: 214 ------------KSTDRTDNSPLFKPTSHL---------------DLIKTV----DKQYL 242
Query: 193 PAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVE-LALKRF--RILYPDAVREPAIKGL 248
P ++F+F+R+ C D A + N L + EV+ + L+ F + + R+ +
Sbjct: 243 PTLYFVFSRKQCADKAHELANIKNYLSSEQSKEVKNIFLEHFGAEDTWSSSTRK-LFRVC 301
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
KG+A HHAG LP+ KS +E+LF + V++ TET + GIN P + SL+K
Sbjct: 302 RKGIAYHHAGLLPLQKSVVEDLFLAKTISVLYCTETFSVGINYPVKAVCFDSLNKYDGRS 361
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L ++E FQM+GRAGRRGID G+ +V Y E K A +EPL SQF SY
Sbjct: 362 FRALANHEFFQMSGRAGRRGIDEIGYSFAIVDLNYFEKEPPVKFDIAKLEPLTSQFRLSY 421
Query: 368 GMVLNLLAGAKVMHLSNESDDMKA-----LQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
VLNLLA + A L A ++ EE R L EQS AK
Sbjct: 422 NTVLNLLATLSPEQIETYFKKSFAAHSYILTAQKTEEEIRLLSEQS----------AQAK 471
Query: 423 DELCK 427
+ LC+
Sbjct: 472 ENLCE 476
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 749 INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN 808
I + P GE A I + E+ + ++ + I+ L QL A+ + + E + ++
Sbjct: 590 IGNDKLLPRGELARYIYVQ-EILVTELIYSGIIEQLDDDQLTALISCIDYESKRNEYFQK 648
Query: 809 NSSI-YEPSTTVINVINVL---DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 864
I ++P ++N I + D R +S+ + + W+ G
Sbjct: 649 FDQIDFKPVREILNYIQSICGPDAVR-----------------FESKAAVLAYYWSKGAA 691
Query: 865 WREMMMDCALDDGDLARLLRRTIDLLAQI 893
E+ + C LD+GD+ +LRRTIDLL Q+
Sbjct: 692 LIELQLLCTLDEGDIIAVLRRTIDLLRQM 720
>gi|242056171|ref|XP_002457231.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
gi|241929206|gb|EES02351.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
Length = 1004
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 182/362 (50%), Gaps = 39/362 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H + ++
Sbjct: 194 VIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICSLHKQPCHVVY 253
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G+ R+ + + LQ S ++ DG
Sbjct: 254 TDFRPTPLQHYVFPIGGSGLYLVVDENGQF--REDNFSKLQDSFAKQNNQLDG------- 304
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
RK ++ + G +A S + +++ + R P I F F+RR
Sbjct: 305 RKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIFSFSRRE 352
Query: 204 CDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL----KGVA 253
C+ + D N DE E E + FR V E PAI+ +L +G+A
Sbjct: 353 CEHHAMSMSKLDFNTEDEKECIE-----QVFRNAIGCLVEEDRSLPAIELMLPLLKRGIA 407
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K +
Sbjct: 408 VHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIG 467
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D RG V++ ++ PLVS F SY +LNL
Sbjct: 468 SGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNL 527
Query: 374 LA 375
++
Sbjct: 528 MS 529
>gi|294945500|ref|XP_002784711.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239897896|gb|EER16507.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1086
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 191/410 (46%), Gaps = 47/410 (11%)
Query: 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 77
+ L ++ ++ DEVH+++D RG VWEE II P +V ++ LSATV N E A W+G+
Sbjct: 214 DESLANIKTVIFDEVHFVNDPDRGVVWEECIILMPADVPMVMLSATVPNYREFADWVGRT 273
Query: 78 HGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
+T ++++ RP PL Y K L+D KG Y ++ SE
Sbjct: 274 KQRTVYTVSTAYRPTPLCHYLWWKEKPYLLMDNKGVFNTATYRKIYDEMRASEAPA---- 329
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT-------------- 182
N+ V K + R+ P+ T
Sbjct: 330 ------------PNTKQTVGKGKGKGKGKGKGKGVHRAPAPKQPLTGESKIRLETQKLQG 377
Query: 183 -LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD-ECEMSEVELALKRFRILYPDAV 240
+ L + D LPA F+F+R C+ + +LL E S+V + LK ++
Sbjct: 378 MIKALETEDKLPATVFVFSRVRCERYAMGMPHLDLLSGSAERSKVHVFLKESFSKLDESD 437
Query: 241 RE-PAIKGL----LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
R+ P I+ + L+G+ HH G LPI K +E LF RG +KV+FATET A G+NMPAR+
Sbjct: 438 RDLPQIQAVTDLALRGIGVHHGGLLPIVKEAVEILFSRGHIKVLFATETFAMGVNMPARS 497
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFA 354
+ SS+ K S L E QM+GRAGRRG+D+ G+V VL + + +
Sbjct: 498 VIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLDSVGNVYVLAAEELPDLKALTTTMTS 557
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
PL SQF ++ M+L + AK+ H E L + LE AR +
Sbjct: 558 KHTPLQSQFKLTFQMLLQM---AKLTHWKAED-----LMSRSYLENARAM 599
>gi|341894795|gb|EGT50730.1| hypothetical protein CAEBREN_32645 [Caenorhabditis brenneri]
Length = 1023
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 172/359 (47%), Gaps = 43/359 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II + ++ LSAT+ NA E A W+ I + ++
Sbjct: 229 VVYDEIHYMRDKERGVVWEETIILMSQHIKQAFLSATIPNAREFAQWVCFIKNQPVNVVY 288
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS---RR 140
+ RP PL + + +++ KG+ K LST+ GS RR
Sbjct: 289 TDYRPTPLQHFIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLSTAG----DSAGSFQKRR 344
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
D N I+ S S D L I F F+
Sbjct: 345 TGGGTQGDSNVLKIIRSVA----------------------------SNDGLNCIVFSFS 376
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAH 255
R+ C++ L+D + E + V+ + L P+ P I +L +G+ H
Sbjct: 377 RKECESYAISLKDMDFNQPNEKTMVKSVYESAISQLSPEDQNLPQIMNILPLLKRGIGVH 436
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G +PI K IE LF GLVKV+FATET + G+NMPART V +S K + ++S
Sbjct: 437 HSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGTDNRYISSG 496
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLNLL
Sbjct: 497 EYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLL 555
>gi|350297103|gb|EGZ78080.1| antiviral helicase [Neurospora tetrasperma FGSC 2509]
Length = 1294
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 181/390 (46%), Gaps = 40/390 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKQKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ +RPVPL Y + ++D + K + L + + P S
Sbjct: 490 YVISTPKRPVPLEHYLWAGKKIHKIVDSEKKFIETGWKEANLAIQGKDKPPKAIEASTGP 549
Query: 139 ----RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-------------- 180
+ R A +N + R S P +
Sbjct: 550 ARGGGNQRGRGGAQRGANQPRGGARGGGQQRGRGGPPRASHTPGHMGRTGRPGGFTSAAQ 609
Query: 181 -DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FR 233
LW L+ ++LPA F+F+++ C+ L + + E S + + ++R
Sbjct: 610 DKNLWVHLVQFLKKDNLLPACIFVFSKKRCEENADALSNQDFCTAQEKSHIHMIIERSIA 669
Query: 234 ILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
L P+ P I + L +G+A HH G LPI K +E LF LVKV+FATET A G+
Sbjct: 670 RLKPEDRVLPQIIRLRELLSRGIAVHHGGLLPIVKEMVEILFAETLVKVLFATETFAMGL 729
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--- 346
N+P RT V S K L E QMAGRAGRRG+D G V++V P G E
Sbjct: 730 NLPTRTVVFSGYRKHDGHQFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAPP 787
Query: 347 --ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ +++ L SQF +Y M+LNLL
Sbjct: 788 VTDLRQMILGEPSKLRSQFRLTYNMILNLL 817
>gi|347842134|emb|CCD56706.1| similar to ATP-dependent RNA helicase DOB1 [Botryotinia fuckeliana]
Length = 951
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 180/359 (50%), Gaps = 33/359 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D SRG VWEE II P +V+ + LSAT+ NA + A WI + H + ++
Sbjct: 271 VVFDEIHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQPCHIVY 330
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF A + ++DEKG S ++T E K D
Sbjct: 331 TDFRPTPLQHYFFPAGADGIHLIVDEKGNFREDNFSK---AMATIEDKKGSDP------- 380
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
AD+N+ G+ + K + A + I + L+ + P I F F++R
Sbjct: 381 ---ADINAKQK----GRGKDKKTNKGANKEGSDIYKIVRMIMLKHYN--PVIVFSFSKRE 431
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL----KGVAAH 255
C+A + D+ SE ++ K F E P I+ +L +G+ H
Sbjct: 432 CEAYALQMSSMAFNDQ---SEKDMVSKVFESAIESLSEEDRTLPQIQHILPLLRRGIGVH 488
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K LT +
Sbjct: 489 HSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGEKMRYLTPS 548
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG+D+RG V+++ E ++ + L S F Y M+LNL+
Sbjct: 549 EFVQMSGRAGRRGLDDRGIVIMMINDKMEPESAKTIVRGEQDKLNSAFYLGYNMILNLM 607
>gi|336464994|gb|EGO53234.1| hypothetical protein NEUTE1DRAFT_73666 [Neurospora tetrasperma FGSC
2508]
Length = 1294
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 181/390 (46%), Gaps = 40/390 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKQKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ +RPVPL Y + ++D + K + L + + P S
Sbjct: 490 YVISTPKRPVPLEHYLWAGKKIHKIVDSEKKFIETGWKEANLAIQGKDKPPKAIEASTGP 549
Query: 139 ----RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-------------- 180
+ R A +N + R S P +
Sbjct: 550 ARGGGNQRGRGGAQRGANQPRGGARGGGQQRGRGGPPRASHTPGHMGRTGRPGGFTSAAQ 609
Query: 181 -DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FR 233
LW L+ ++LPA F+F+++ C+ L + + E S + + ++R
Sbjct: 610 DKNLWVHLVQFLKKDNLLPACIFVFSKKRCEENADALSNQDFCTAQEKSHIHMIIERSIA 669
Query: 234 ILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
L P+ P I + L +G+A HH G LPI K +E LF LVKV+FATET A G+
Sbjct: 670 RLKPEDRVLPQIIRLRELLSRGIAVHHGGLLPIVKEMVEILFAETLVKVLFATETFAMGL 729
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--- 346
N+P RT V S K L E QMAGRAGRRG+D G V++V P G E
Sbjct: 730 NLPTRTVVFSGYRKHDGHQFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAPP 787
Query: 347 --ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ +++ L SQF +Y M+LNLL
Sbjct: 788 VTDLRQMILGEPSKLRSQFRLTYNMILNLL 817
>gi|330794782|ref|XP_003285456.1| hypothetical protein DICPUDRAFT_53548 [Dictyostelium purpureum]
gi|325084631|gb|EGC38055.1| hypothetical protein DICPUDRAFT_53548 [Dictyostelium purpureum]
Length = 1118
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 180/364 (49%), Gaps = 48/364 (13%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HYL D RG VWEE II P ++ + LSAT+ NA E A WI +IH +
Sbjct: 319 EVSWVIFDEIHYLRDKERGVVWEETIILLPDSIKFVFLSATIPNAREFAAWIAKIHKQPC 378
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 137
++ + RP+PL Y S L ++DE G + N SL+ LQ + + GG
Sbjct: 379 HVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQTEDTGR----GG 434
Query: 138 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 197
+R +R +D +++ K + R+ P I F
Sbjct: 435 RGKRQNRGPSDC-----------YKIVK-------------------MIMERNYQPVIVF 464
Query: 198 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 252
F+++ C+ + + +E E + VE L + + PA+ +L +G+
Sbjct: 465 SFSKKECELYALQMSKLDFNNEEEKNAVETIFNNAIDSLSEEDKKLPAVINILPLLKRGI 524
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +S+ K G +
Sbjct: 525 GIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGTRWV 584
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMV 370
T E QM+GRAGRRG+D RG V+L V E A K + G + L S F Y M+
Sbjct: 585 TGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPA--VAKGMVKGQADRLTSSFWIGYSML 642
Query: 371 LNLL 374
LN++
Sbjct: 643 LNMI 646
>gi|440798984|gb|ELR20045.1| hypothetical protein ACA1_113910 [Acanthamoeba castellanii str.
Neff]
Length = 1345
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 179/363 (49%), Gaps = 51/363 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++DI RG VWEE+II P V +I LSATV N E A WIG+ K
Sbjct: 507 DVEWVIFDEVHYVNDIERGVVWEEVIIMLPDHVNLILLSATVPNTLEFADWIGRTKKKNI 566
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+IT+++RPVPL Y ++D + N+L + Y+ +
Sbjct: 567 FVITTNKRPVPLEHYLWVSNERYKIVDNRS---------NFL------MGGYQSAMQAAK 611
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ + + + G Q +R++ ++ID LR + +LP + F F++
Sbjct: 612 QKQTKSAGATAKAARASGVKQ---------QRTKWVKMID---QLRVKGLLPVVVFAFSK 659
Query: 202 RGCDAAVQYLEDCNLLDECEMSEV----ELALKRFR---ILYPDAVREPAIKGLLK-GVA 253
+ C+ L +L E E+ E AL R + P +R IK LLK G+
Sbjct: 660 KKCEDVAHGLTSTDLTTSVEKHEIHVFMEAALDRLKGPDRKLPQVLR---IKDLLKRGIG 716
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH G LPI K +E LF RG +KV+FATET A G+NMPART V ++ K +L
Sbjct: 717 VHHGGLLPIIKEMVEILFGRGKIKVLFATETFAMGVNMPARTVVFENVQKHDGRAFREL- 775
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
AGRRG+D G V+++ + + + ++ + L SQF +Y M+L
Sbjct: 776 ---------HAGRRGLDTVGTVIIMTKEDKFPPSAGLQTMILGKPQKLESQFRLTYNMIL 826
Query: 372 NLL 374
NLL
Sbjct: 827 NLL 829
>gi|85118702|ref|XP_965488.1| hypothetical protein NCU01857 [Neurospora crassa OR74A]
gi|28927298|gb|EAA36252.1| hypothetical protein NCU01857 [Neurospora crassa OR74A]
Length = 1294
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 181/390 (46%), Gaps = 40/390 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 430 DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKQKDI 489
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--- 138
+I++ +RPVPL Y + ++D + K + L + + P S
Sbjct: 490 YVISTPKRPVPLEHYLWAGKKIHKIVDSEKKFIETGWKEANLAIQGKDKPPKAIEASTGP 549
Query: 139 ----RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-------------- 180
+ R A +N + R S P +
Sbjct: 550 ARGGGNQRGRGGAQRGANQPRGGARGGGQQRGRGGPPRASHTPGHMGRTGRPGGFTSAAQ 609
Query: 181 -DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FR 233
LW L+ ++LPA F+F+++ C+ L + + E S + + ++R
Sbjct: 610 DKNLWVHLVQFLKKDNLLPACIFVFSKKRCEENADALSNQDFCTAQEKSHIHMIIERSIA 669
Query: 234 ILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
L P+ P I + L +G+A HH G LPI K +E LF LVKV+FATET A G+
Sbjct: 670 RLKPEDRVLPQIIRLRELLSRGIAVHHGGLLPIVKEMVEILFAETLVKVLFATETFAMGL 729
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--- 346
N+P RT V S K L E QMAGRAGRRG+D G V++V P G E
Sbjct: 730 NLPTRTVVFSGYRKHDGHQFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAPP 787
Query: 347 --ECCKLLFAGVEPLVSQFTASYGMVLNLL 374
+ +++ L SQF +Y M+LNLL
Sbjct: 788 VTDLRQMILGEPSKLRSQFRLTYNMILNLL 817
>gi|260811728|ref|XP_002600574.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
gi|229285861|gb|EEN56586.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
Length = 961
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 180/357 (50%), Gaps = 40/357 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + ++
Sbjct: 165 VVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICWLHKQPCHVVY 224
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RPVPL Y + L ++DE G R+ + N + + +DGG +
Sbjct: 225 TDYRPVPLQHYIFPAGGDGLHLVVDETGSF--REDNFN------TAMAVLRDGGDNSKGD 276
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
R + + +K NA + ++ + R+ P I F F+++
Sbjct: 277 R-------------WSKKGFTKGPSNAFKIVKM---------IMERNFAPVIAFSFSKKE 314
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E ++ E E+ L + + P ++ +L +G+ HH
Sbjct: 315 CEAYALQMSKLDFNTDEEKKLVE-EVFFNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 373
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET + G+NMPART + +S K ++S E
Sbjct: 374 GLLPILKETIEILFSEGLIKALFATETFSMGLNMPARTVLFTSARKFDGKDFRWVSSGEY 433
Query: 318 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D RG V+L+ G LL +PL S F +Y MVLNLL
Sbjct: 434 IQMSGRAGRRGLDERGIVILMIDEKMGPSVGKNLLKGAPDPLNSAFHLTYNMVLNLL 490
>gi|213405633|ref|XP_002173588.1| ATP-dependent RNA helicase DOB1 [Schizosaccharomyces japonicus
yFS275]
gi|212001635|gb|EEB07295.1| ATP-dependent RNA helicase DOB1 [Schizosaccharomyces japonicus
yFS275]
Length = 1002
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 179/362 (49%), Gaps = 45/362 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DEVHY+ D RG VWEE II P V+ I LSAT+ NA E A WI +IH +
Sbjct: 203 EVSWVIFDEVHYMRDKDRGVVWEETIILLPDAVRYIFLSATLPNAKEFADWICKIHNQPC 262
Query: 82 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ +S RP PL + + A + ++DE GK M Q + S + + SR
Sbjct: 263 HVVYTSYRPTPLQHFLFPRGANGIYMIVDEHGKLME-----GNFQKAMSILNEQDETSSR 317
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
++ + + VP++ + + + D P I F F
Sbjct: 318 KKQKQNKS----------------------------VPELFRLVKMITANDYDPLIIFCF 349
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR-EPAIKGLL----KGVAA 254
+++ C+A + ++D+ + V+ + R P I +L +G+
Sbjct: 350 SKKECEAGAVSISSLEVIDDKKKELVDQVFNSAMNQLSETDRCIPQITNMLPLLRRGIGI 409
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI + +E LFQ GL+ ++FATET + G+NMPART + + + K + + S
Sbjct: 410 HHSGMLPILREVVEILFQEGLITILFATETFSIGLNMPARTVLFTEMQKFSGESFRWINS 469
Query: 315 NELFQMAGRAGRRGIDNRG-HVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLN 372
+E QM+GRAGRRG+D RG +V+ ++ A K +F G L S F SY M+LN
Sbjct: 470 SEYTQMSGRAGRRGLDERGLSIVMANKNFDLA--TAKAIFTGPPAALNSAFRISYNMILN 527
Query: 373 LL 374
LL
Sbjct: 528 LL 529
>gi|156059878|ref|XP_001595862.1| hypothetical protein SS1G_03952 [Sclerotinia sclerotiorum 1980]
gi|154701738|gb|EDO01477.1| hypothetical protein SS1G_03952 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1082
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 180/359 (50%), Gaps = 33/359 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI + H + ++
Sbjct: 269 VVFDEIHYMRDKARGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQPCHIVY 328
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF A + ++DEKG S ++T E K D
Sbjct: 329 TDFRPTPLQHYFFPAGADGIHLIVDEKGNFREDNFSK---AMATIEEKKGSDP------- 378
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
AD+N+ G+ + K + A + I + L+ + P I F F++R
Sbjct: 379 ---ADINAKQK----GRGKDKKTNKGANKEGSDIYKIVRMIMLKHYN--PVIVFSFSKRE 429
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL----KGVAAH 255
C+A + D+ SE ++ K F E P I+ +L +G+ H
Sbjct: 430 CEAYALQMSSMAFNDQ---SEKDMVSKVFESAIESLSEEDRTLPQIQHILPLLRRGIGVH 486
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K LT +
Sbjct: 487 HSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGEKMRYLTPS 546
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG+D+RG V+++ E ++ + L S F Y M+LNL+
Sbjct: 547 EFVQMSGRAGRRGLDDRGIVIMMINDKMEPESAKTIVRGEQDKLNSAFYLGYNMILNLM 605
>gi|294899270|ref|XP_002776564.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239883606|gb|EER08380.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1069
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 191/410 (46%), Gaps = 47/410 (11%)
Query: 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 77
+ L ++ ++ DEVH+++D RG VWEE II P +V ++ LSATV N E A W+G+
Sbjct: 196 DENLANIKTVIFDEVHFVNDPDRGVVWEECIILMPADVPMVMLSATVPNYREFADWVGRT 255
Query: 78 HGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
+T ++++ RP PL Y K L+D KG Y ++ SE
Sbjct: 256 KQRTVYTVSTAYRPTPLCHYLWWKDKPYLLMDNKGVFNTATYRKIYDEMRASEAPA---- 311
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT-------------- 182
N+ V K + R+ P+ T
Sbjct: 312 ------------PNTKQTVGKGKGKGKGKGKGKGVHRAPAPKQPLTGESKIRLETQKLQG 359
Query: 183 -LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD-ECEMSEVELALKRFRILYPDAV 240
+ L + D LPA F+F+R C+ + +LL E S+V + LK ++
Sbjct: 360 MIKALETEDKLPATVFVFSRVRCERYAMGMPHLDLLSGSAERSKVHVFLKESFSKLDESD 419
Query: 241 RE-PAIKGL----LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
R+ P I+ + L+G+ HH G LPI K +E LF RG +KV+FATET A G+NMPAR+
Sbjct: 420 RDLPQIQAVTDLALRGIGVHHGGLLPIVKEAVEILFSRGHIKVLFATETFAMGVNMPARS 479
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFA 354
+ SS+ K S L E QM+GRAGRRG+D+ G+V VL + + +
Sbjct: 480 VIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLDSVGNVYVLAAEELPDLKALTTTMTS 539
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
PL SQF ++ M+L + AK+ H E L + LE AR +
Sbjct: 540 KHTPLQSQFKLTFQMLLQM---AKLTHWKAED-----LMSRSYLENARAM 581
>gi|224087335|ref|XP_002308126.1| predicted protein [Populus trichocarpa]
gi|222854102|gb|EEE91649.1| predicted protein [Populus trichocarpa]
Length = 985
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 184/365 (50%), Gaps = 28/365 (7%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V I+ DE+HY+ D RG VWEE II+ P+ ++++ LSAT++NA E A WI +H +
Sbjct: 175 LKEVAWIIFDEIHYMKDRERGVVWEESIIFMPQVIKMVFLSATMSNATEFAEWICHLHKQ 234
Query: 81 -TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RP PL Y F A L L+ ++ + N+++L + K G+
Sbjct: 235 PCHVVYTDFRPTPLQHYVFPVGGAGLYLVVDESEQFRED---NFMKLQDTFSKQKAGEGN 291
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
+ N++ ++SK NA S + +++ + R P I F
Sbjct: 292 KSANAKASG--------------RISKGG-NASGGSDIYKIVKMIM---ERKFQPVIVFS 333
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F+RR + + + + E VE + + R PAI+ +L +G+A
Sbjct: 334 FSRREVEQHAMSMSKLDFNTQEEKDIVEQVFNNAILCLNEEDRNLPAIELMLPLLKRGIA 393
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 394 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 453
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRRG D RG +++ ++ PLVS F SY +LNL
Sbjct: 454 SGEYIQMSGRAGRRGKDERGICIIMIDERMEMNTLKDMVLGKPAPLVSTFRLSYYSILNL 513
Query: 374 LAGAK 378
++ A+
Sbjct: 514 MSRAE 518
>gi|348667405|gb|EGZ07230.1| hypothetical protein PHYSODRAFT_528925 [Phytophthora sojae]
Length = 1056
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 180/387 (46%), Gaps = 31/387 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH + ++
Sbjct: 243 VIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPCHVVY 302
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DEKGK LS S + S N+
Sbjct: 303 TDYRPTPLQHYIFPAGGNGLHLVVDEKGKFREDNFQKAIATLSASVDDAAAELASYGSNT 362
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ SN K + V + + R P I F F++R
Sbjct: 363 KRRKAQKSN-----------PKKKVGT-------DVFRIVKLIMERQYDPVIIFSFSKRE 404
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + E E V+ K D R P + +L +G+ HH G
Sbjct: 405 CESYALLMSKLDFNTEEEKQSVDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGIHHGG 464
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LF GL+K +FATET + G+NMPA+T V ++ K +T+ E
Sbjct: 465 LLPILKEVIEILFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITAGEYI 524
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL---- 374
QM+GRAGRR +D RG V+ + + + +L+ +PL S F Y M+LNL+
Sbjct: 525 QMSGRAGRRSLDARGIVIQMLSEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLMRVED 584
Query: 375 AGAKVMHLSNESDDMKALQAGRSLEEA 401
A + M + + QA +LEEA
Sbjct: 585 ADPEYM-IKQSFHQFQNEQAAPALEEA 610
>gi|429850926|gb|ELA26154.1| ATP-dependent RNA helicase dob1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 1083
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 219/452 (48%), Gaps = 63/452 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 252 VVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 311
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RP PL YF S + ++DEKG + N + ++ ++ + + + +
Sbjct: 312 TDFRPTPLQNYFFPSGGNGIFLVVDEKGVFREGNFQKTMALVEQGKGQDPSNANANWKGK 371
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
++K+ GQ K+ I+ I R ++ +H P I F F++
Sbjct: 372 GAKKNTQKG--------GQAADMKSDISKIVR----MIMQKSFH-------PVIIFNFSK 412
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
+ + + ++ E + V+ +A RE P I+ LL KG+ HH
Sbjct: 413 KEVENLALNISHFQFNNDSEQAMVKTVFNNAIQSLSEADRELPQIQNLLPLLQKGIGVHH 472
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LFQ L+KV+ ATET + G+NMPA+T V + ++K R LT +E
Sbjct: 473 SGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLTPSE 532
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNLL
Sbjct: 533 YIQMSGRAGRRGLDSRGIVIMMIDDKMEPDTARAIVVGEQDRLNSAFYLGYNMILNLL-- 590
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 436
++ +S E ++E+ F + + A + +L +Q+E D ++
Sbjct: 591 -RIEAISPEF-----------------MLERCFHQFQTGASVPALERDLMALQQERDAMS 632
Query: 437 SEISDDAIDRKSRRLLSEAAYKEMANLQEELK 468
I+D EA KE NL+ +L+
Sbjct: 633 --IAD------------EATVKEYYNLRNQLE 650
>gi|423074707|ref|ZP_17063432.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854396|gb|EHL06467.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 762
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 185/370 (50%), Gaps = 57/370 (15%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+++ + L V I+ DE+H+L+D RGTVWEE II P ++++ LSATVANA +L W
Sbjct: 121 VITGDPALESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATVANARQLVDW 180
Query: 74 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG I + LI + R VPL +Y+ K L +NY +L
Sbjct: 181 IGSIRQEEVALIQENHRIVPLEYYYFAKDTGL---------------VNYEKL------- 218
Query: 133 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+K R +++ Q ++ SI A P L + + L
Sbjct: 219 WKYYRQRIQSA------------------QPTEGSIFA------PTHHLDLIKVIQKHYL 254
Query: 193 PAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL-- 248
PA++F+F+R+ C D A + N L E +VE A L+ F P++ P+ + L
Sbjct: 255 PALYFVFSRKQCADKASELALIANYLKPQEKRQVEDAFLEHFG---PESDWYPSTRLLRR 311
Query: 249 --LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
+KG+A HHAG +P K +EELF + L+ V++ TET + GIN P R+ +L+K
Sbjct: 312 LAVKGIAFHHAGLMPSQKVLVEELFLKRLIHVLYCTETFSVGINYPVRSVCFDTLNKFDG 371
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 372 RNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKNPPPRFNINRLEPLTSQFKL 431
Query: 366 SYGMVLNLLA 375
SY VLNL A
Sbjct: 432 SYNTVLNLQA 441
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 849 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 904
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|268537292|ref|XP_002633782.1| C. briggsae CBR-MTR-4 protein [Caenorhabditis briggsae]
Length = 1024
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 181/373 (48%), Gaps = 45/373 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II V+ LSAT+ NA E A W+ + + ++
Sbjct: 234 VVYDEIHYMRDKERGVVWEETIILMSNHVKQAFLSATIPNAREFAQWVCSLKQQPVNVVY 293
Query: 86 SSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + +++ KG+ K L+T+ G S
Sbjct: 294 TDYRPTPLQHFIYPVNGEGMYEVVNVKGEFREDKFRDAMSGLATA-------GDS----- 341
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
SF Q + K + S V+ + + + D L I F F+R+
Sbjct: 342 -----------AGSFNQRRSGKGT------SGDSNVLKIIRSVAANDGLNCIVFSFSRKE 384
Query: 204 CDAAVQYLEDCNLLDECEM----SEVELALKRFRILYPDAVREPAIKGLL----KGVAAH 255
C+A L+D + E S E A+ + L P+ P I +L +G+ H
Sbjct: 385 CEAYALSLKDMDFNQPQEKLMVKSVYESAISQ---LSPEDQNLPQITNILPILKRGIGVH 441
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G +PI K IE LF GLVKV+FATET + G+NMPART V +S K + ++S
Sbjct: 442 HSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKYDGTENRYISSG 501
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL- 374
E QMAGRAGRRG D+RG V+L+ A + +++ +PL SQF +Y MVLNL+
Sbjct: 502 EYIQMAGRAGRRGKDDRGTVILMVDSAMSAVDAKQIIKGATDPLNSQFRLTYNMVLNLMR 561
Query: 375 -AGAKVMHLSNES 386
G V H+ + S
Sbjct: 562 VEGMAVSHIISSS 574
>gi|298711426|emb|CBJ32567.1| Superkiller viralicidic activity 2-like 2 (ATP-dependent helicase
SKIV2L2) conserved hypothetical pr [Ectocarpus
siliculosus]
Length = 1034
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 201/426 (47%), Gaps = 55/426 (12%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ N+ E GWI + H + ++
Sbjct: 222 VIYDEIHYMRDKNRGVVWEESIILLPHKVRFVFLSATIPNSKEFCGWIAKTHHQPCHVVY 281
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+ RPVPL Y L ++D KG+ N + ++ LQ +T E + +G
Sbjct: 282 TDYRPVPLEHYIFPFGGEGLHLVVDNKGRFRENNFQKAMAKLQ-ATPEEQAVAEGKK--- 337
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+FG + +K ++ + + + + R + PAI F F +
Sbjct: 338 ---------------TFGAKKQAK------KQGEGSDLYKIVRLVMDRSLDPAIVFSFAK 376
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 256
+ C+ + + D+ E VE D R+ P ++ +L +GV HH
Sbjct: 377 KECEGNALQMSKLDFNDDSEKLLVEQVFGNAMESLADEDRQLPQVEAILPLLKRGVGIHH 436
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
G LPI K IE LFQ GL+K++FATET + G+NMPART V ++ K +TS E
Sbjct: 437 GGLLPILKEVIEILFQEGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGE 496
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM+GRAGRRG D+RG V+ + + +L+ + L S + SY M+LN+L
Sbjct: 497 YIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNML-- 554
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 436
+ + D LV+ SF + A ++E + E VL
Sbjct: 555 ----RVEDADPDF--------------LVKSSFNQFQQEASAPALEEEASDLDSEKKVLA 596
Query: 437 SEISDD 442
+ ++D+
Sbjct: 597 AGLNDE 602
>gi|146414183|ref|XP_001483062.1| hypothetical protein PGUG_05017 [Meyerozyma guilliermondii ATCC
6260]
Length = 1060
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 175/356 (49%), Gaps = 30/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DEVHY+ D SRG VWEE II P +V + LSAT+ NA + A WI IH + ++
Sbjct: 249 VVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMQFAEWIVDIHAQPCHVVY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y ++ + ++DEKG +S + SR +
Sbjct: 309 TDFRPTPLQHYLFPASGDGIHLVVDEKGTFREENFQKAMASISDNSGDDPASDTSRGKKG 368
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + + + + +++ ++ R P I F F++R
Sbjct: 369 QTYKGGQKDG-------------------KLDIYKIVKMIYMKRYN---PVIVFSFSKRD 406
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C++ + + ++ E + L P++ +E P IK +L +G+ HH+G
Sbjct: 407 CESLALKMSKLDFNNDEERDALTQIFNNAISLLPESDKELPQIKNILPLLKRGIGIHHSG 466
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 467 LLPILKEIIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYI 526
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 527 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 582
>gi|385302494|gb|EIF46623.1| dead-box family helicase required for mrna export from nucleus
[Dekkera bruxellensis AWRI1499]
Length = 991
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 173/356 (48%), Gaps = 31/356 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 181 VIFDEVHYMRDKIRGVVWEETIIMLPDKVHYVFLSATIPNAMEFAQWICKIHNQPCHIVY 240
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + + ++DEK ++ E D GS NS
Sbjct: 241 TDFRPTPLQHYLFPANGDGIYLVVDEKSNFREENFQRAMACITNHE---GDDPGSI--NS 295
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
RK + S +S + +++ +W + P I F F++R
Sbjct: 296 RKGGKSWKGGVHDS---------------KSDIYKIVKMIWMKKYN---PVIVFSFSKRD 337
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+A + + E E + L D +E P IK +L +G+ HH+G
Sbjct: 338 CEALAMKMSKLDFNTEDEKKMLTKIFHNAIDLLSDEDKELPQIKNILPLLKRGIGIHHSG 397
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K + ++ E
Sbjct: 398 LLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGTEFRWVSGGEYI 457
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + +L + L S F Y M+LNLL
Sbjct: 458 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMLKGQADRLDSAFHLGYNMILNLL 513
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%)
Query: 658 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEG---------FKEYKKIVDTVKFTEEK 708
+L+ + H +++ + K++ LKKK++ T +Y K V +
Sbjct: 725 ILNAINKMHINDKDFLQLEKKISILKKKVSSTSIANSPDLEXLVXQYSKFVSX----KNN 780
Query: 709 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768
IK L+ + K + I+ + K LR I + + + G A I +
Sbjct: 781 IKILETKXKEVQSIIQLDDLKHRKRVLRRLGFISQDDVVQMK-------GRVACEISTGD 833
Query: 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV-INVLD 827
EL L ++ N +LKP Q AA+ + V E + + + EP T+ + +
Sbjct: 834 ELLLTELIFNGXFNELKPEQCAALLSCFVFEERSNEVPRLTPELAEPLKTLREMATKIAK 893
Query: 828 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 887
R +++ EK VE + +V +W G T+ ++ + +G L R+ RR
Sbjct: 894 VSRECKIDMIEKDYVE---SFRYELMEVVLSWCKGATFTQICKMTDVYEGSLIRMFRRLE 950
Query: 888 DLLAQI 893
+++ Q+
Sbjct: 951 EMIKQL 956
>gi|427780069|gb|JAA55486.1| Putative cytoplasmic exosomal rna helicase ski2 dead-box
superfamily [Rhipicephalus pulchellus]
Length = 931
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 178/368 (48%), Gaps = 52/368 (14%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
+V ++ DE+HY+ D RG VWEE II P V+ + LSAT+ NA + A WI +H +
Sbjct: 130 EVGWVIFDEIHYMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPC 189
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RPVPL Y + + L ++DE G K + L + D +
Sbjct: 190 HVVYTEYRPVPLQHYIFPAGGSGLYLVVDESGNFKEDKFNEAMALLQNAGDAAKGDSALK 249
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R + N IV + RD P I F F
Sbjct: 250 GRKGGFKGESNCYKIVK----------------------------MIMERDYAPVIVFSF 281
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL----KG 251
+++ C+A Y LD E +L ++ F+ L + + P ++ +L +G
Sbjct: 282 SKKECEA---YATQIARLDLTTFKEKKLVMEVFQNAMDSLSEEDQKLPQVEQVLPLLKRG 338
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HH+G LPI K IE LF GLVK +FATET A G+NMPART + ++ K
Sbjct: 339 IAVHHSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPARTVLFTNARKFDGKDFRW 398
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGV-EPLVSQFTAS 366
+TS E QM+GRAGRRG+D+RG V+L+ +P G K + G+ +P+ S F +
Sbjct: 399 VTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPAAG-----KDIVKGLPDPINSAFHLT 453
Query: 367 YGMVLNLL 374
Y MVLNL+
Sbjct: 454 YNMVLNLM 461
>gi|426246501|ref|XP_004017032.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Ovis aries]
Length = 1042
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 249 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 309 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 360
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 361 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 398
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 399 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHG 457
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 458 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 517
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 518 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 573
Query: 374 L 374
L
Sbjct: 574 L 574
>gi|291395365|ref|XP_002714082.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Oryctolagus
cuniculus]
Length = 1040
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 247 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 306
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 307 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 358
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 359 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 396
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 397 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 455
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 456 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 515
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 516 IQMSGRAGRRGMDDRGIVILMVDEKMSPTVGKQ----LLKGSADPLNSAFHLTYNMVLNL 571
Query: 374 L 374
L
Sbjct: 572 L 572
>gi|301623717|ref|XP_002941157.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Xenopus
(Silurana) tropicalis]
Length = 1031
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 181/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 238 VIFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 297
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S L ++DE G R+ + N + ++ +D G +
Sbjct: 298 TDYRPTPLQHYIFPSGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 349
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 350 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 387
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 388 CEAYALQMSKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 446
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + +S K ++S E
Sbjct: 447 GLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEY 506
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 507 IQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQ----LLKGSADPLNSAFHLTYNMVLNL 562
Query: 374 L 374
L
Sbjct: 563 L 563
>gi|148878031|gb|AAI46078.1| SKIV2L2 protein [Bos taurus]
Length = 1040
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 247 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 306
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 307 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 358
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 359 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 396
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 397 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHG 455
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 456 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 515
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 516 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 571
Query: 374 L 374
L
Sbjct: 572 L 572
>gi|328865723|gb|EGG14109.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1058
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/454 (28%), Positives = 209/454 (46%), Gaps = 82/454 (18%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HYL D RG VWEE II P V+ + LSAT+ NA E A WI +IH + ++
Sbjct: 265 VIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAKEFAAWIAKIHSQPCHVVY 324
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP+PL Y S L ++DEKG + L+ E+ GG+ R+
Sbjct: 325 TDYRPIPLQHYIFPSGGDGLHLVVDEKGVFREENFIKSLSGLNQPEL-----GGNNRKKG 379
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+A N+ +++ K + R+ P I F F+++
Sbjct: 380 PNNAKKGPNDC------YKIVK-------------------MIMERNYQPVIIFSFSKKD 414
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-----AIKGLL----KGVAA 254
C+ + + +E E VE D++ E A+ +L +G+
Sbjct: 415 CETYALQMSKLDFNNEEERKAVETIFNN----AIDSLSESDKSLTAVVNILPLLKRGIGI 470
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +++ K ++
Sbjct: 471 HHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTNVRKFDGDQLRWVSG 530
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNL 373
E QM+GRAGRRG+D RG +V++ + + K + GV + L S F Y M+LN+
Sbjct: 531 GEYIQMSGRAGRRGLDERG-IVIMMVDEKMEPDVAKGMVKGVADRLTSSFWIGYSMLLNM 589
Query: 374 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 433
+ + + KL+++SF Y +++ D++ KI+ E D
Sbjct: 590 MRVEDI--------------------DPEKLLKRSFHQYQQESIIPQLTDKVQKIEAEKD 629
Query: 434 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL 467
+ ++ +E A +E L+++L
Sbjct: 630 QI--------------QIKNETAVQEFFGLKQQL 649
>gi|322704335|gb|EFY95931.1| ATP-dependent RNA helicase DOB1 [Metarhizium anisopliae ARSEF 23]
Length = 1098
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 205/425 (48%), Gaps = 49/425 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
+V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH + ++
Sbjct: 271 VVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVY 330
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL YF S ++DEKG + + L E++ K GS N+
Sbjct: 331 TDFRPTPLQNYFYPSGGKGARIVVDEKGN-----FNEHNFNLVMKEIEDKKGAGSNDINA 385
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
++ + I + I+ I R + + + P I F F++
Sbjct: 386 KQRGKGKNKKINKGGVDE---GSDIHKIIRMTIKKKFN-----------PVIVFNFSKAE 431
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + D+ E + V + RE P IK LL +GV HH+G
Sbjct: 432 CENMALNISSLSFNDDSEKAMVRKVFHSAIESLSEQDRELPQIKNLLPLLERGVGVHHSG 491
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ L+KV+ ATET + G+NMPA+T V + ++K R +TS+E
Sbjct: 492 LLPILKETIEILFQESLLKVLVATETFSIGLNMPAKTVVFTQVTKWDGVKRRPITSSEYI 551
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 378
QMAGRAGRRG+D RG V+++ + ++ + L S F Y M+LNLL +
Sbjct: 552 QMAGRAGRRGLDARGVVIMMIDDKLEPDTAKGIVTGHQDKLNSAFYLGYNMILNLL---R 608
Query: 379 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
+ +S E ++E+ F + + + + + EL +Q+E D L+
Sbjct: 609 IEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQERDGLS-- 649
Query: 439 ISDDA 443
I D+A
Sbjct: 650 IPDEA 654
>gi|440912988|gb|ELR62502.1| Superkiller viralicidic activity 2-like 2, partial [Bos grunniens
mutus]
Length = 1041
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 248 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 307
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 308 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 359
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 360 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 397
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 398 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHG 456
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 457 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 516
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 517 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 572
Query: 374 L 374
L
Sbjct: 573 L 573
>gi|408419914|ref|YP_006761328.1| DNA/RNA helicase HelY [Desulfobacula toluolica Tol2]
gi|405107127|emb|CCK80624.1| HelY: DNA/RNA helicase [Desulfobacula toluolica Tol2]
Length = 707
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 186/373 (49%), Gaps = 49/373 (13%)
Query: 25 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-EL 83
D+I+LDE H+L D RG VWEEI+IY P + ++ LSAT+ N ++A W+ I GK +
Sbjct: 159 DLIILDEAHFLGDEQRGVVWEEIMIYLPVRIPLLLLSATIGNPFQIAQWLESIRGKKCHV 218
Query: 84 ITSSRRPVPL-TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
I ++ RPVPL + L PL+ +KL + ++++ KP
Sbjct: 219 IKNNDRPVPLFPLFLHPSGTLFPLMTSPVPGQKQKLHKKVFKFNSTKNKP---------- 268
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
V ++G++ +P D L L +LPAI+F+ +R
Sbjct: 269 ------------VMAYGRN--------------LPPFGDILNILDRYHLLPAIFFLKSRA 302
Query: 203 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA-VREPAIKGLLK--GVAAHHAGC 259
CD A++ L D LLD+ + L K ++ +A + + L+ AAHH+G
Sbjct: 303 ECDQAIK-LCDSTLLDKDPKRKAALLDKINELVSGNAHLANHNHRQYLEQTATAAHHSGH 361
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
LP WK +E L GL+ +FAT T+AAG+N PAR+ V+ + + + L +E Q
Sbjct: 362 LPAWKVVVETLMAEGLLDAMFATSTVAAGVNFPARSVVVLNSDRFNGVEFMPLNPSEFQQ 421
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 379
M+GRAGRRG+DN G +++ + KLL + + SQ T ++ MVLNLL
Sbjct: 422 MSGRAGRRGMDNIGFCIVLPGKFMDLNYVAKLLSSPSTDIESQITINFSMVLNLL----- 476
Query: 380 MHLSNESDDMKAL 392
LS+ D +K L
Sbjct: 477 --LSHTPDQIKML 487
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYE--- 814
G A+ +R + L +A +R +L PA LA++ S V+E ++ +Y
Sbjct: 545 GLWASKLRIDAPLMVAQSIRENLLPQNDPALLASIIGSFVNEK-----EFSDDPLYNQAL 599
Query: 815 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 874
P +++ E + L+L +K G + P L Q S M+ WA W E++
Sbjct: 600 PKRLKEAFLDIRQELKPFALKLLKK-GFDAPN-LFIQPSLMLYLWAHDKPWEELITQSDF 657
Query: 875 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 919
+GD ARL+ RT + L QI KL + ++ K A +A++++ + P+
Sbjct: 658 AEGDFARLVLRTSENLRQISKLKETFPQIAKTAREATDLILKEPV 702
>gi|348569044|ref|XP_003470308.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cavia
porcellus]
Length = 1042
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 249 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 309 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 360
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 361 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 398
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 399 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 457
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 458 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 517
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 518 IQMSGRAGRRGMDDRGIVILMVDEKMSPTVGKQ----LLKGSADPLNSAFHLTYNMVLNL 573
Query: 374 L 374
L
Sbjct: 574 L 574
>gi|255088573|ref|XP_002506209.1| predicted protein [Micromonas sp. RCC299]
gi|226521480|gb|ACO67467.1| predicted protein [Micromonas sp. RCC299]
Length = 1047
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 203/445 (45%), Gaps = 55/445 (12%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
+V I+ DEVHY+ D RG VWEE II+ P + + LSAT+ NA E A WI +H
Sbjct: 188 EVKWIIFDEVHYMRDRERGVVWEESIIFAPAGCKFVFLSATLPNAHEFAEWITHLHNHPC 247
Query: 82 ELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y K ++ +++E+ + L NY +L + R
Sbjct: 248 HVVYTDYRPTPLQHYGFPKGGNGMVMIVNERKEF----LEANYAELEAKIDALTQSAKKR 303
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSK----------NSINAIRRSQVPQVIDTLWHLRSR 189
+R+ R AD G +S + +++ T+ R+R
Sbjct: 304 KRDERVKADGGRGRGGGGRGGGGRGGRWGRGGGRGGDSGEDASEVDIKKIMKTI---RAR 360
Query: 190 DMLPAIWFIFNRRGCDA-AVQYLEDCNLLDECEMSEVELALKRFRILYPDAV-------R 241
D+ P I F F+RR C+ A + LD + EL R +Y +A+ R
Sbjct: 361 DLYPVIVFSFSRRACETHANDLMTGKTQLDFTTQEQKEL----IRQIYDNALLCMAEEDR 416
Query: 242 EPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
E A L +G+ HH G LPI K +E LF LVK +FATET A G+NMPART
Sbjct: 417 ELACVQKIFPMLERGIGIHHGGLLPIIKELVEILFGESLVKCLFATETFAMGLNMPARTC 476
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356
V + + K L E QMAGRAGRRG D+RG +L+ EE +
Sbjct: 477 VFTEVEKFDGKEMRVLQPGEYTQMAGRAGRRGKDDRGTCILMLDKKLDKEELVHMTCGTG 536
Query: 357 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 416
L+S+F +Y +LNLL A S E E+A ++++SF + +
Sbjct: 537 SALMSEFKLTYYSILNLLRRA-----SGE-------------EDAEYVIQRSFHQFQHTR 578
Query: 417 VMLAAKDELCKIQKETDVLTSEISD 441
+ K EL +I E D + ++SD
Sbjct: 579 EVPRKKLELQEITAEADGIQLDMSD 603
>gi|115484445|ref|NP_001065884.1| Os11g0176200 [Oryza sativa Japonica Group]
gi|62733691|gb|AAX95802.1| HUA enhancer 2 [Oryza sativa Japonica Group]
gi|77548918|gb|ABA91715.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113644588|dbj|BAF27729.1| Os11g0176200 [Oryza sativa Japonica Group]
gi|218185351|gb|EEC67778.1| hypothetical protein OsI_35316 [Oryza sativa Indica Group]
gi|222615614|gb|EEE51746.1| hypothetical protein OsJ_33162 [Oryza sativa Japonica Group]
Length = 1003
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 178/357 (49%), Gaps = 29/357 (8%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H + ++
Sbjct: 193 VIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVY 252
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G+ N+L+L + K S + +
Sbjct: 253 TDFRPTPLQHYVFPIGGSGLYLVVDEDGQFRED----NFLKLQDTFTK-----QSNQVDG 303
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
RK ++ + G +A S + +++ + R P I F F+RR
Sbjct: 304 RKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIFSFSRRE 351
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + + E +E + + R PAI+ +L +G+A HH+G
Sbjct: 352 CEHHAMSMSKLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSG 411
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K + S E
Sbjct: 412 LLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYI 471
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
QM+GRAGRRG D RG V++ ++ PLVS F SY +LNL++
Sbjct: 472 QMSGRAGRRGKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMS 528
>gi|403216027|emb|CCK70525.1| hypothetical protein KNAG_0E02660 [Kazachstania naganishii CBS
8797]
Length = 1054
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 171/356 (48%), Gaps = 28/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH + ++
Sbjct: 240 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 299
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
++ RP PL Y S + ++DEK +S E
Sbjct: 300 TNFRPTPLQHYLFPSHGDGIYLVVDEKSTFREENFQKAMASISNQE-------------- 345
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
D NS N GQ + + + +++ +W + P I F F++R
Sbjct: 346 --GDDPNSVNARGKKGQ-TFKGGAAKGDSKGDIYKIVKMIWKKKYN---PVIVFSFSKRD 399
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + + E + L P+ RE P IK +L +G+ HH+G
Sbjct: 400 CEELALKMSKLDFNSDDEKDALTKIFTNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 459
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++ E
Sbjct: 460 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGEYI 519
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 520 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 575
>gi|395818820|ref|XP_003782813.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 3
[Otolemur garnettii]
Length = 1031
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 238 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 297
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 298 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 349
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 350 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 387
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 388 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 446
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 447 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 506
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 507 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 562
Query: 374 L 374
L
Sbjct: 563 L 563
>gi|296475815|tpg|DAA17930.1| TPA: superkiller viralicidic activity 2-like 2 [Bos taurus]
Length = 935
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 247 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 306
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 307 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 358
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 359 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 396
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 397 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHG 455
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 456 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 515
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 516 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 571
Query: 374 L 374
L
Sbjct: 572 L 572
>gi|341881947|gb|EGT37882.1| CBN-MTR-4 protein [Caenorhabditis brenneri]
Length = 1020
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 171/359 (47%), Gaps = 43/359 (11%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II + ++ LSAT+ NA E A W+ I ++
Sbjct: 229 VVYDEIHYMRDKERGVVWEETIILMSQHIKQAFLSATIPNAREFAQWVCFIKNHPVNVVY 288
Query: 86 SSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS---RR 140
+ RP PL + + +++ KG+ K LST+ GS RR
Sbjct: 289 TDYRPTPLQHFIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLSTAG----DSAGSFQKRR 344
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
D N I+ S S D L I F F+
Sbjct: 345 TGGGTQGDSNVLKIIRSVA----------------------------SNDGLNCIVFSFS 376
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAH 255
R+ C++ L+D + E + V+ + L P+ P I +L +G+ H
Sbjct: 377 RKECESYAISLKDMDFNQPNEKTMVKSVYESAISQLSPEDQNLPQIMNILPLLKRGIGVH 436
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G +PI K IE LF GLVKV+FATET + G+NMPART V +S K + ++S
Sbjct: 437 HSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGTDNRYISSG 496
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLNLL
Sbjct: 497 EYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLL 555
>gi|395818816|ref|XP_003782811.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Otolemur garnettii]
Length = 1042
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 249 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 309 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 360
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 361 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 398
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 399 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 457
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 458 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 517
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 518 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 573
Query: 374 L 374
L
Sbjct: 574 L 574
>gi|325193485|emb|CCA27801.1| AGAP009600PA putative [Albugo laibachii Nc14]
Length = 1100
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 180/392 (45%), Gaps = 38/392 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E A WI IH + ++
Sbjct: 272 VIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAAWICYIHHQPCHVVY 331
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLST-----SEVKPYKDGGS 138
+ RP PL Y + L ++DEKGK L+ +E G
Sbjct: 332 TDYRPTPLQHYVFPAGGNGLHLVVDEKGKFREDNFQKAIATLTNCVSQDTESSDMTTSGG 391
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
RR K M++ V S V + + R P I F
Sbjct: 392 PRRKRGKTGGMSAKKKVGS--------------------DVYRIVKLIMERQYDPVIVFS 431
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVA 253
F++R C+A + + E E V+ + L D P + +L +G+
Sbjct: 432 FSKRECEAYALLMAKLDFNSEAEKEMVDQVFRNAMDSLSDDDKTLPQVDAILPLLRRGIG 491
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH G LPI K IE +F GL+K +FATET + G+NMPA+T V ++ K +T
Sbjct: 492 IHHGGLLPILKEVIEIMFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWIT 551
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
S E QM+GRAGRR +D+RG V+ + + +L+ +PL S F Y M+LNL
Sbjct: 552 SGEYIQMSGRAGRRSVDSRGIVIQMLSEQMEPHVAKGILYGQADPLYSAFHLGYNMLLNL 611
Query: 374 L----AGAKVMHLSNESDDMKALQAGRSLEEA 401
L A + M + ++ QA +L+EA
Sbjct: 612 LRVEDANPEYM-IKQSFHQFQSEQAAPALQEA 642
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,642,762,039
Number of Sequences: 23463169
Number of extensions: 561097227
Number of successful extensions: 1669198
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4474
Number of HSP's successfully gapped in prelim test: 775
Number of HSP's that attempted gapping in prelim test: 1650207
Number of HSP's gapped (non-prelim): 13632
length of query: 924
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 772
effective length of database: 8,792,793,679
effective search space: 6788036720188
effective search space used: 6788036720188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)