BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002426
(924 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 1393 bits (3606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/917 (72%), Positives = 786/917 (85%), Gaps = 4/917 (0%)
Query: 11 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 256 SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 315
Query: 71 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
AGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE
Sbjct: 316 AGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEA 375
Query: 131 K--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
+ DG +RR+ ++ D + NN+V + + LSKN IN IRRSQVPQ+ DTLWHL+
Sbjct: 376 RFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWHLQG 434
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGL
Sbjct: 435 KNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGL 494
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
L+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+ +
Sbjct: 495 LRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNE 554
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYG
Sbjct: 555 RIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYG 614
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
MVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I
Sbjct: 615 MVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEI 674
Query: 429 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+RF A
Sbjct: 675 DNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLA 734
Query: 489 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 548
LK +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFALN
Sbjct: 735 LKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNL 794
Query: 549 LAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
+ D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE
Sbjct: 795 IEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREI 854
Query: 608 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +
Sbjct: 855 MKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDN 914
Query: 668 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
A + YKEQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+RL R+EQIE
Sbjct: 915 AAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIE 974
Query: 728 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
PSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP
Sbjct: 975 PSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPP 1034
Query: 788 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V IPCC
Sbjct: 1035 QLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMIPCC 1094
Query: 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
LD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ++A
Sbjct: 1095 LDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSA 1154
Query: 908 VDASNVMDRPPISELAG 924
A+++MDRPPISELAG
Sbjct: 1155 AAAADIMDRPPISELAG 1171
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 233/489 (47%), Gaps = 69/489 (14%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
+V+DEVH+++D RG VWEE+I++ P +V+++ LSATV+NA+E GW+ + G T ++
Sbjct: 129 VVMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTVRGDTTVVVD 188
Query: 87 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 146
RPVPL + L L D ++ N L+ + + D S RN R+
Sbjct: 189 EHRPVPLWQHVLVGKRLFDLFDYDSNVDQSPVNPNLLR-HIAHCR-EADRMSDWRNPRRR 246
Query: 147 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 206
A S + ++ R +V ++D + +LPAI F+F+R GCDA
Sbjct: 247 AGRGSG----------VRPRFYRSLARPEVIAILD------AEGLLPAITFVFSRFGCDA 290
Query: 207 AVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGLLKGVAAH 255
AVQ L E E +++ +LA +L RE GLL+G+AAH
Sbjct: 291 AVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWRE----GLLRGLAAH 346
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
HAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 347 HAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPG 406
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYE---GAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E Q+ GRAGRRGID GH V++ P E G L A PL S F SY M +N
Sbjct: 407 EYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTIN 466
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
L +H S E A L+EQSF Y ++ + + +
Sbjct: 467 L------VHWM-------------SPERAHALLEQSFAQYQADRSVVGLVRGIERCTQVL 507
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
++SE+ +A E A L+ + +R ++ + R L+R A D+
Sbjct: 508 GDISSELGG-----------PDAPILEYARLRARIAEMERAQSFVFR---LQRKQAANDV 553
Query: 493 LKDFENGHL 501
L G +
Sbjct: 554 LAALRRGDI 562
Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 112/271 (41%), Gaps = 22/271 (8%)
Query: 633 MEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGF 692
+ +L + + L+VP + + D++ ++D V + E + A+L++ +
Sbjct: 632 LASALRSAATRLSVPDIGDGVDGDKI-----GFNDGVLHDPELASLRAQLRRHRSNN--- 683
Query: 693 KEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDI 749
+DT E+ R++ + +L +++ S + F RI ++ E R
Sbjct: 684 ---APGLDTQLQQAERYLRIERYNAQLQRKVAAATNSLARTFDRIVGLLIERDFIRGPAD 740
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN 809
+ QV G A I E++L +A LR L+PA+LAAV ++++ E
Sbjct: 741 DPQVTDD-GRLLARIYSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGP 799
Query: 810 SSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREM 868
P+ + + ++ +++H + + D F G++ WA +G +
Sbjct: 800 VDAEAPTPRLRQALQHTSRLSATLRADEQRHRIALSREPDDGFVGVIYCWARTGDLAAVL 859
Query: 869 MM------DCALDDGDLARLLRRTIDLLAQI 893
L GD R R+ +DLL Q+
Sbjct: 860 AAADASGNGAPLSAGDFVRWCRQVLDLLDQL 890
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 210/428 (49%), Gaps = 70/428 (16%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMN 115
ATV+NA+E GWI + G T ++ RPVPL + + L D E +N
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVN 223
Query: 116 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175
R+L L ++ + RR + + AD + R
Sbjct: 224 REL-LRHI--------------AHRREADRMADWQPR---------RRGSGRPGFYRPPG 259
Query: 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-------- 225
P+VI L + +LPAI F+F+R GCDAAV Q L L E E + +
Sbjct: 260 RPEVIAKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRC 316
Query: 226 -ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 284
+LA +L RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATET
Sbjct: 317 GDLADSDLAVLGYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATET 372
Query: 285 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344
LA GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P
Sbjct: 373 LALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE 432
Query: 345 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404
E L PL S F SY M +NL +H ++A +L
Sbjct: 433 PSEVAGLASTRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRL 473
Query: 405 VEQSFGNY 412
+EQSF Y
Sbjct: 474 LEQSFAQY 481
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 207/382 (54%), Gaps = 33/382 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYK----- 134
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 135 ---------------DG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178
DG G R ++R A+ + + G ++ + + + P+
Sbjct: 557 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 616
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238
+++ +LR R++LP + F+F+++ C+ +LE N + E S++ + +++
Sbjct: 617 IVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 239 AVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
R+ P I + LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT + SS+ K +G +LT E QMAGRAGRRG+D+ G V+++ + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 793
Query: 354 AGVEP-LVSQFTASYGMVLNLL 374
GV L SQF +Y M+LNLL
Sbjct: 794 MGVPTRLQSQFRLTYNMILNLL 815
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 740 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
V+ +T +D N V+ G A I EL L ++ + L +P ++ A+ + V E
Sbjct: 1098 VLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYE 1156
Query: 800 G---------IKVRLWKNNSSIYEPSTTVINVINV----LDEHRSSFLELQEKHGVEIPC 846
G + RL K I E ++ V N L + + FL+ +
Sbjct: 1157 GKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRK--------- 1207
Query: 847 CLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLL 883
+F+ M V WA GL+++E+M +G + R++
Sbjct: 1208 ----RFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVI 1242
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 224/447 (50%), Gaps = 38/447 (8%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNI 445
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR-R 140
+I++ +RPVPL Y K + ++D+ G R L Y + + KP K ++
Sbjct: 446 YVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVIAKDN 501
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+NS + V + + S ++ R + + HL +++LP I F+F+
Sbjct: 502 KNSARGRGAARGRGVQT--NMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFS 559
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELA-------LKRFRILYPDAVREPAIKGLLKGVA 253
++ C+ V L + +L + E SEV + LK+ L P R + L +G+A
Sbjct: 560 KKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREM--LSRGLA 617
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K L
Sbjct: 618 VHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLL 677
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E Q +GRAGRRG+D G V+++ ++ ++ L+SQF +Y M+LN
Sbjct: 678 PGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILN 737
Query: 373 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
LL +V L E ++++SF V ++ ++++ +++
Sbjct: 738 LL---RVETLRIED-----------------MIKRSFSENVNQTLVPQHEEKIKSFEEKL 777
Query: 433 DVLTSEISDDAIDRKSRRLLSEAAYKE 459
L E+SD + LLS ++KE
Sbjct: 778 SALKKEMSDVDLKEIKSCLLSSESFKE 804
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 38/365 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A WIG++ +
Sbjct: 416 DLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQI 475
Query: 82 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
+I++ RPVPL Y T+ L LLD +G + Y
Sbjct: 476 YVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAA 521
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+++ KHA +FG Q + A R + L LR+R LP +
Sbjct: 522 VEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVV 570
Query: 196 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLK 250
F F+R CD L +L E SE+ L L+R + R+ P + + L +
Sbjct: 571 VFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNR 630
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR 690
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
L E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M
Sbjct: 691 DLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTM 750
Query: 370 VLNLL 374
+LNLL
Sbjct: 751 ILNLL 755
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 177/356 (49%), Gaps = 37/356 (10%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
+V DE+HY+ D RG VWEE II K ++ LSAT+ NA + A W+ I + ++
Sbjct: 235 VVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVY 294
Query: 86 SSRRPVPLT-WYFSTK-TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL W + + +++ KG+ K L+T+ G S
Sbjct: 295 TDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATA-------GDS----- 342
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
S N + G Q N + IR + S D L I F F+R+
Sbjct: 343 -----AGSFNKRRTGGGTQGDSNVLKIIR------------SVASNDGLNCIVFSFSRKE 385
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAAHHAG 258
C++ L+D + + E V+ + L P+ + P I +L +G+ HH+G
Sbjct: 386 CESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSG 445
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
+PI K IE LF GLVKV+FATET + G+NMPART V +S K S +TS E
Sbjct: 446 LMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYI 505
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLNL+
Sbjct: 506 QMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLM 561
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 247 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 306
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 307 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 358
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 359 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 396
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 397 CEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 455
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 456 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEY 515
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 516 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 571
Query: 374 L 374
L
Sbjct: 572 L 572
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 182/361 (50%), Gaps = 48/361 (13%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELIT 85
++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I
Sbjct: 249 VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY 308
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y + L ++DE G R+ + N + ++ +D G +
Sbjct: 309 TDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRDAGDLAKGD 360
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+K G+ +K N V + + R+ P I F F+++
Sbjct: 361 QK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVIIFSFSKKD 398
Query: 204 CDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 257
C+A A+Q + D N +E +M E E+ L + + P ++ +L +G+ HH
Sbjct: 399 CEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 457
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 317
G LPI K IE LF GL+K +FATET A GINMPART + ++ K ++S E
Sbjct: 458 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 517
Query: 318 FQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F +Y MVLNL
Sbjct: 518 IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHLTYNMVLNL 573
Query: 374 L 374
L
Sbjct: 574 L 574
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 172/356 (48%), Gaps = 28/356 (7%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH + ++
Sbjct: 259 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 318
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
++ RP PL Y + + ++DEK +S +
Sbjct: 319 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS----------------N 362
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ D NS + GQ S + + +++ +W + P I F F++R
Sbjct: 363 QIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSFSKRD 418
Query: 204 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAG 258
C+ + + + E + L P+ RE P IK +L +G+ HH+G
Sbjct: 419 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 478
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 318
LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++ E
Sbjct: 479 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 538
Query: 319 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 539 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 182/367 (49%), Gaps = 62/367 (16%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DEVHY+ D RG VWEE +I P ++ I LSAT+ NA + A WI +IH + ++
Sbjct: 235 VIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVY 294
Query: 86 SSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL + + A + L+DEK K +V D +R+ N
Sbjct: 295 TDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFK---------KVLEVLDHSTRQEN- 344
Query: 144 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 203
+ + +++ R +I+ + R P I F F+++
Sbjct: 345 --------------YSKSSKKVKKSSSLER-----IINMVLSNRYD---PIIVFCFSKKE 382
Query: 204 CDA-AVQY-------LEDCNLLDEC------EMSEVELALKRFRILYPDAVREPAIKGLL 249
C+ A Q+ E+ L+ E ++SE + L++F E LL
Sbjct: 383 CEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQF---------EEMRSLLL 433
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH+G LPI K +E LFQ GLV+++FATET + G+NMPART + + K + +
Sbjct: 434 RGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNF 493
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGH--VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 367
LTS E QM+GRAGRRGID +G V+L Q+ E A C L+ + L S F SY
Sbjct: 494 RWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC--LMNGQADVLNSAFHLSY 551
Query: 368 GMVLNLL 374
GM+LNL+
Sbjct: 552 GMILNLM 558
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 172/359 (47%), Gaps = 35/359 (9%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELIT 85
++ DE+HY+ D RG VWEE II P + + LSAT+ NA + A WI +IH + ++
Sbjct: 308 VIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVY 367
Query: 86 SSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 143
+ RP PL Y S + ++DEK +++ +R S
Sbjct: 368 TDFRPTPLQHYLFPSGSDGIHLVVDEKSN--------------------FREENFQRAMS 407
Query: 144 ---RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
K D + + T + S + +++ + ++ P I F F+
Sbjct: 408 ALMEKQGD-DPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIM---VKNYNPVIVFSFS 463
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAH 255
+R C+A + ++ D+ E V + RE P I+ +L +G+ H
Sbjct: 464 KRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIH 523
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315
H+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K ++
Sbjct: 524 HSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGG 583
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
E QM+GRAGRRG+D+RG V+L+ +L + L S F SY M+LNLL
Sbjct: 584 EYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNLL 642
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 169/364 (46%), Gaps = 70/364 (19%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L D+D VLDE HY++D RG V E + + ++ I+ LSAT+ NA ++A W+
Sbjct: 139 LKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGTILALSATIGNAKDVAKWL-----N 193
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
+++ ++ RPVPL K + Y + + Y DG + +
Sbjct: 194 ADIVATNWRPVPL-----------------------KEGVMYSEGKKGHIILYSDGTTNK 230
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+ ++ + ++ LSK + RS + + M + + F
Sbjct: 231 --------LKGDDPIIAYTLDILSKGGQVIVFRSSRK-------YAETTAMKISQYMNFV 275
Query: 201 RRGCDAAVQYLEDCNLLDECE-MSEVELALKRFR-ILYPDAVREPAIKGLLKGVAAHHAG 258
+ L+D LL+ E + EVE A + +LY VR GVA HHAG
Sbjct: 276 K---------LDDKKLLETAERIKEVEDAGSNEKEVLYNLIVR---------GVAFHHAG 317
Query: 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTSN- 315
+ IE F+ ++KV+ AT TLAAG+N+PAR V+ + + R G ++ S
Sbjct: 318 LSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTM 377
Query: 316 ELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS---YGMVL 371
E QM+GRAGR G DN G ++LV++ E + K L + +EP+ S+ A + VL
Sbjct: 378 EYRQMSGRAGRPGYDNHGEAIILVRSKVEVDKVIDKYLHSDIEPIESKLGAEGPFFSFVL 437
Query: 372 NLLA 375
+L+A
Sbjct: 438 SLIA 441
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 169/363 (46%), Gaps = 69/363 (19%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V VLDE HYL+D RG E + I K ++ LSAT++N E+A W+
Sbjct: 139 LNEVSYFVLDEFHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWL-----N 193
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
EL+ ++ RPVPL + + P ++KG V YKD SR+
Sbjct: 194 AELVATNWRPVPLK-----EGIIYP--EKKGF-----------------VVVYKDNTSRK 229
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
+ ++ + ++ +SK + RS +T +R ++ + F+
Sbjct: 230 --------VYGDDAIIAYTLDIVSKGGQVLVFRSSRKLAENT-----ARKIVQYMNFV-- 274
Query: 201 RRGCDAAVQYLEDCNLLDEC-EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 259
LED LL+ ++ EVE A +E +L+GVA HHAG
Sbjct: 275 ---------KLEDKKLLEIARKIKEVEDA--------GSNEKEDLYNLVLRGVAYHHAGL 317
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTS-NE 316
+ IE F+ ++KV+ AT TLAAG+N+PAR V+ + + R G + L +
Sbjct: 318 SKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMD 377
Query: 317 LFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQF---TASYGMVLN 372
QM+GRAGR G D G VV+V+ E + + L + VEP+ S+ +A Y +++
Sbjct: 378 YKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLIS 437
Query: 373 LLA 375
++A
Sbjct: 438 IIA 440
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 150/362 (41%), Gaps = 74/362 (20%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSATVANADELAGWIGQIHG 79
D+ +V DEVH + D RG E + ++V Q++ LSATV NA ELA W+
Sbjct: 147 DLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL----- 201
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
EL+ S RP+ L G H + L Y DG
Sbjct: 202 DAELVDSDWRPIEL---------------RTGVHYGQSLH-------------YDDGT-- 231
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWHLRSRDMLPAIWFI 198
Q +LS S SQ V+ DTL D + F+
Sbjct: 232 --------------------QAELSVGS-----GSQTAAVVADTLA-----DDGSTLVFV 261
Query: 199 FNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256
+RR +A+ + L D N L E + R + + + G A HH
Sbjct: 262 NSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHH 321
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTS 314
AG + +EE F+ LVK V AT TLAAG+N PAR V+ + TA G L
Sbjct: 322 AGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDV 381
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNL 373
E+ QM GRAGR G+D G VL+ ++ EE + ++A EP+ S+ A + ++
Sbjct: 382 LEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHV 441
Query: 374 LA 375
LA
Sbjct: 442 LA 443
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 150/362 (41%), Gaps = 74/362 (20%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSATVANADELAGWIGQIHG 79
D+ +V DEVH + D RG E + ++V Q++ LSATV NA ELA W+
Sbjct: 147 DLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL----- 201
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
EL+ S RP+ L G H + L Y DG
Sbjct: 202 DAELVDSDWRPIEL---------------RTGVHYGQSLH-------------YDDGT-- 231
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWHLRSRDMLPAIWFI 198
Q +LS S SQ V+ DTL D + F+
Sbjct: 232 --------------------QAELSVGS-----GSQTAAVVADTLA-----DDGSTLVFV 261
Query: 199 FNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256
+RR +A+ + L D N L E + R + + + G A HH
Sbjct: 262 NSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHH 321
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTS 314
AG + +EE F+ LVK V AT TLAAG+N PAR V+ + TA G L
Sbjct: 322 AGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDV 381
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNL 373
E+ QM GRAGR G+D G VL+ ++ EE + ++A EP+ S+ A + ++
Sbjct: 382 LEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHV 441
Query: 374 LA 375
LA
Sbjct: 442 LA 443
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 166/364 (45%), Gaps = 68/364 (18%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L + + VLDE+HYL+D RG V E + I K ++ LSAT++N ++A W+G
Sbjct: 136 LNEANYFVLDELHYLNDPERGPVVESVTIRA-KRRNLLALSATISNYKQIAKWLG----- 189
Query: 81 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
E + ++ RPVPL + + P E+ K Y L ++D +R+
Sbjct: 190 AEPVATNWRPVPLM-----EGVMYP---ERKKK-------EYTIL-------FRDNTARK 227
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
++ ++ + ++ LSKN + R+ T + A + F
Sbjct: 228 --------VHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-------ANYMNFV 272
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 259
A + L+ + ++E E EL +K L+ KGVA HHAG
Sbjct: 273 SLDEKAISEILKQLDDIEEGGSDEKEL-----------------LKSLISKGVAYHHAGL 315
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL---SKRTASGRIQLTSNE 316
+ IEE F++ +KV+ AT TLAAG+N+PART ++ + +++ ++ E
Sbjct: 316 SKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVME 375
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFT---ASYGMVLN 372
QM+GRAGR G D G ++V E + K + + VEP+ S+ A Y +L
Sbjct: 376 YKQMSGRAGRPGFDQIGESIIVVRDKEDVDRVFKKYILSDVEPIESKLGSERAFYTFLLG 435
Query: 373 LLAG 376
+L+
Sbjct: 436 ILSA 439
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 152/361 (42%), Gaps = 71/361 (19%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHG 79
D+D +V DEVH + D RG E + + +Q++ LSATV NA E+A W+
Sbjct: 138 DLDCVVADEVHLVDDEHRGPTLEVTLAKLRRVNPNLQVVALSATVGNAGEMAEWL----- 192
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
EL+ SS RP+ L KG H + L + T + P
Sbjct: 193 DAELVDSSWRPIEL---------------RKGVHYGQAL---HFGDGTQQELPV------ 228
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
Q ++ A+ R + + TL F+
Sbjct: 229 ----------------------QRTEKPTEAVVRETLDEGGSTLV------------FVN 254
Query: 200 NRRGCDAAVQYLEDCNL--LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257
+RR + A + L + LD E + + + R + + + +G A HHA
Sbjct: 255 SRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIRAVSDTETSDDLADCVEQGAAFHHA 314
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT--ASGRIQLTSN 315
GC +S +E+ F+ L+K + AT TLAAG+N PAR V+ + + A G L+
Sbjct: 315 GCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVL 374
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLL 374
E+ QM GRAGR G D G VL+ ++ +E + ++A EP+ S+ M +LL
Sbjct: 375 EVHQMMGRAGRPGRDPYGEAVLLADSHDELDELLDRYVWADPEPVESKLAREPSMRTHLL 434
Query: 375 A 375
A
Sbjct: 435 A 435
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 143/345 (41%), Gaps = 76/345 (22%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV ++V+DE+H + RG E II QII LSAT+ N +ELA W+ +
Sbjct: 138 DVKMLVIDEIHLIGSRDRGATLEFIITQMLGRAQIIGLSATIGNPEELAEWLN-----AK 192
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 142
LI S RPV L KG + ++DGGS R N
Sbjct: 193 LIRSDWRPVKL---------------RKGVFYQGFVF-------------WEDGGSERYN 224
Query: 143 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
S + +A+++ + A+ F+ RR
Sbjct: 225 SWEEL-------------------VYDAVKKGK-----------------GALVFVNMRR 248
Query: 203 GCDAAVQYLEDC--NLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 259
+ L N LD E+ E+ ELA L + E K LL GVA HHAG
Sbjct: 249 KAEKTALELAKKVKNYLDRKELRELRELA----ESLEENPTNEKLAKALLSGVAFHHAGL 304
Query: 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 319
+ +E+ F++GL+KVV AT TL+AGIN PA ++ + + G ++ E+ Q
Sbjct: 305 GRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQ 364
Query: 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
M GRAGR D G ++V T E + + E L SQ +
Sbjct: 365 MMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLS 409
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 154/361 (42%), Gaps = 71/361 (19%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHG 79
D+ +V DEVH + D RG E + + ++Q + LSAT+ NA+ LA W+
Sbjct: 138 DLTCVVTDEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWL----- 192
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
L+ S RP+ L +KG H + L L + GS+
Sbjct: 193 DAGLVDSDWRPIDL---------------QKGVHYGQALHL--------------EDGSQ 223
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+R S ++ + + IV DTL D + F+
Sbjct: 224 QRLSVQNNEKQTAAIVR------------------------DTL-----EDDGSTLVFVN 254
Query: 200 NRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257
+RR +AA L + L E ++ + R + + + G A HHA
Sbjct: 255 SRRNAEAAAGRLANTVRPHLSTEERDQLADIAEEIRDVSDTETSDDLADAVADGAAFHHA 314
Query: 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS--KRTASGRIQLTSN 315
G + +E+ F+ LVKVV AT TLAAG+N P+R V+ +A G L+
Sbjct: 315 GLSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVL 374
Query: 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLL 374
E+ QM GRAGR G+D G VL+ + ++ +E + ++A EP+ S+ A + ++L
Sbjct: 375 EVHQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPALRTHIL 434
Query: 375 A 375
A
Sbjct: 435 A 435
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 163/367 (44%), Gaps = 59/367 (16%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-EVQIICLSATVANADELAGWIGQIHGKT 81
D+ + V+DE+H + D RG E I+ QI+ LSATV N +E+A W+
Sbjct: 136 DLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQIVGLSATVGNPEEIANWLN-----A 190
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+L+T RPV L +KG ++ ++ NY+ S+ K +K S R
Sbjct: 191 KLVTDEWRPVEL---------------KKGIYLENEI--NYINNQDSQKKSFKAVKSISR 233
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSI-NAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
N+ ++S V G + NS NA+ S+ +
Sbjct: 234 NNLTDLIVDS---VNEKGSCLIFCNSKRNAVGESKKHNL--------------------- 269
Query: 201 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 260
+YL L D +SE L++ + P + + + KGVA HHAG
Sbjct: 270 -------TKYLSKAELNDLNSISEEILSI----LETPTETCKSLSECIKKGVAFHHAGLT 318
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 320
+ +EE F+ ++KV+ T TL+AG+N+P R A++ + + + +G I + E+ Q
Sbjct: 319 YQHRKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLEIHQC 378
Query: 321 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 380
GRAGR G+D G +++ + E+ L +E + S+ + + +++L +
Sbjct: 379 IGRAGRPGLDPYGEGIILAKNEKDVEKAFLALTGPLENIYSKLSNQKVLRVHILGLIATL 438
Query: 381 HLSNESD 387
+ + S+
Sbjct: 439 EIKSTSE 445
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 63/249 (25%)
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--------EDCNLLDECEMSEVELAL 229
++ + + L+ +D+LPA++F FNR C Q + + N+++E +++L +
Sbjct: 1146 EITNIVLELQKQDLLPALFFSFNRSLCSRLAQRVYNDITHRNTNPNIIEE--KKQLDLVI 1203
Query: 230 KRFR-------------------------------ILYPD------------AVREPAIK 246
+RF+ L P ++P
Sbjct: 1204 ERFQKSLGRALADLEPNDPEKMELERLKAKRASLDYLKPQFGNLLSSDIDEKVKKDPLAP 1263
Query: 247 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L +G+AAHH GC + +E LF+ ++VVFAT TLA G+N PA+++V S
Sbjct: 1264 ALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVFLGDSPYLN 1323
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366
LTS Q AGRAGRRG DN G+V+ V P ++ +LL + + ++ S
Sbjct: 1324 V----LTSK---QCAGRAGRRGFDNYGNVIFVGLP---KQKINRLLNSRLSNIIGNSVVS 1373
Query: 367 YGMVLNLLA 375
+ L+L++
Sbjct: 1374 PSLCLSLVS 1382
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI--HGKTELI 84
I+ DEVH ++ G +WE ++++ P + LSAT+ N + ++ +I + K LI
Sbjct: 946 IIFDEVHQIASSVDGAIWERLLVFNP--APFLALSATLGNLTDFHNFLKKIDPNRKVSLI 1003
Query: 85 TSSRRPVPLTWYFSTKT 101
R L +F +T
Sbjct: 1004 HYQSRFNDLKNFFLCQT 1020
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L +GVA HHAG ++FIE F+ +KV+ AT TLAAG+N+PAR ++ +++ +
Sbjct: 284 LPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSD 343
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFT 364
G LT+ E+ QM GRAGR G D G ++ Q+ YE A++ L EP+VS
Sbjct: 344 GISYLTNMEIKQMIGRAGRPGYDQYGIGLIYVSSQSSYEAAKDY---LSTDPEPVVSYLG 400
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMK 390
+ N LA + + SD MK
Sbjct: 401 NEAKVRFNTLAAISMGLARSPSDIMK 426
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWE---EIIIYCPKEVQIICLSATVANADELAGWIGQI 77
L DV ++VLDE+H + D SRG E I Y +V+I+ LSATV+NA ELA W+
Sbjct: 133 LNDVGLLVLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWL--- 189
Query: 78 HGKTELITSSRRPVPL 93
LI S RPVPL
Sbjct: 190 --DASLIKSDFRPVPL 203
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 237 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
P +V E + G+A HHAG P + +EE F+ G VKVV++T TLAAG+N+PAR
Sbjct: 293 PRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRV 352
Query: 297 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
V+ S + A R + E QMAGRAGR G+D G ++V
Sbjct: 353 VIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIV 394
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 8/77 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEII---IYCPKEVQIICLSATVANADELAGWIGQIHG 79
+V V+++DE+H +SD RG + E I+ + E Q++ LSATV NA E+A WIG G
Sbjct: 139 NVSVLIVDEIHSVSDPKRGPILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIG---G 195
Query: 80 KTELITSSRRPVPLTWY 96
K ++ SS RPVPL Y
Sbjct: 196 K--IVESSWRPVPLREY 210
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 239 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
AV E + L +G+ HH+G ++ +E LF+ G + VV AT TL+ GINMP RT V
Sbjct: 1212 AVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 358
S +QL + Q AGRAGRRG D GHV + P + +LL +
Sbjct: 1272 LGDS-------LQLNALNFHQAAGRAGRRGFDLLGHVGFLGVPL---HKIYRLLTTKLWD 1321
Query: 359 LVSQFTASYGMVLNL 373
+ QF + +VL L
Sbjct: 1322 IQGQFPLTTSLVLQL 1336
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 78
I+ DE+H + + G V E++++ P I+ LSATV N E W+ +
Sbjct: 861 IIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSALQ 910
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH+ K F+E LF +GL++VV ATETLA GI+MP ++ V A
Sbjct: 1243 RGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVF-------AQDS 1295
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
+ L + QM+GRAGRRG D G+V P + +LL + V L QF S +
Sbjct: 1296 VYLDALNYRQMSGRAGRRGQDLLGNVYFFDIPLPKIK---RLLASSVPELRGQFPLSITL 1352
Query: 370 VLNLLAGAKVMHLSNESDD 388
VL L M L+++ DD
Sbjct: 1353 VLRL------MLLASKGDD 1365
Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 24 VDVIVLDEVHYLSDISRGTVWE--EIIIYCPKEVQIICLSATVANADELAGWIGQI 77
+ ++ DEVHYL WE +II CP + LSAT+ N + L W+ +
Sbjct: 863 IRYVIFDEVHYLGREVGAKFWELLLVIIRCP----FLVLSATINNPNLLTKWLQSV 914
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+K +G+ HHAG + + +E LF+ G + V+F+T TL+ G+NMP +T +
Sbjct: 1275 LKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF------ 1328
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
+QLT QM+GRAGRRG D+ G+V+ + P + +LL A + L
Sbjct: 1329 -GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIP---TSKVRRLLTASLSNLQGNPP 1384
Query: 365 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
+ +L L A + NE + R+ A+ L+E SF
Sbjct: 1385 FTVLFLLRLFAYVHQQDILNEEGQKVSTMKQRAF-AAKSLLEHSF 1428
Score = 40.4 bits (93), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 81
+ +V DEVH + +WE+ ++I CP + LSAT+ NA++L W ++
Sbjct: 907 IKYVVFDEVHSIGASEESHIWEQLLLLIQCP----FLALSATIGNANKLHEW---LNSSE 959
Query: 82 ELITSSRRPVPLTWY 96
+ ++ +R V L Y
Sbjct: 960 QAKSAGKRKVELINY 974
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 215 NLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 273
N L + E+ E+ ELA L + E K L GVA HHAG + +EE F++
Sbjct: 263 NFLTKKELRELKELA----ESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKK 318
Query: 274 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333
GL+KVV AT TL+AGIN PA ++ + + G ++ E+ QM GRAGR D G
Sbjct: 319 GLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVG 378
Query: 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS---YGMVLNLLA 375
++V T E + + + E L SQ + G +L L+A
Sbjct: 379 EAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNESILRGQILALIA 423
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
+V V+V+DE+H + RG E II QII LSAT+ N +ELA W+ +
Sbjct: 138 NVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQIIGLSATIGNPEELAEWLN-----AK 192
Query: 83 LITSSRRPVPL 93
LI S RPV L
Sbjct: 193 LIKSDWRPVKL 203
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 244 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
AI+G GVA HHAG + +EE F++G++K V AT TL+AGIN PA ++ + +
Sbjct: 292 AIRG---GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR 348
Query: 304 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 363
+ G ++ E+ QM GRAGR D G ++V T + E +F E L SQ
Sbjct: 349 YSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQL 408
Query: 364 TASYGMVLNLLA 375
+ + +LA
Sbjct: 409 SNESNLRSQVLA 420
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV ++V DE+H + RG E I+ + + QII LSAT+ N +ELA W+ E
Sbjct: 138 DVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-----AE 192
Query: 83 LITSSRRPVPL 93
LI S RPV L
Sbjct: 193 LIVSDWRPVKL 203
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+ GL+K GV+ HHAG + IEE F+RG+++V+ +T TLAAG+N+PAR +++ +
Sbjct: 302 LTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRR 361
Query: 304 -RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
G I++ E QMAGRAGR G+D G +++
Sbjct: 362 YEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIII 397
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIG 75
S +++V +++DE+H+++D RG + E I+ QII LSAT+ N +ELA W+
Sbjct: 135 SWIWNVGQLIIDEIHFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWL- 193
Query: 76 QIHGKTELITSSRRPVPL 93
+L+ S RPV L
Sbjct: 194 ----NAKLVKSDWRPVSL 207
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK-RTASG 308
+GVA H+AG + +E+ F+RGL+KVV +T TLAAG+N+PAR V++ + A G
Sbjct: 302 RGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALG 361
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R ++ E QMAGRAGR G+D G VLV
Sbjct: 362 REEIPVLEYRQMAGRAGRPGLDPYGEAVLV 391
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 30 DEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
DE+HYL D RG V E I+ + + Q I LSATV NA E+A W+G L+ S
Sbjct: 143 DEIHYLGDPRRGPVLESIVAKLRHLGLKTQFIGLSATVGNAGEVAAWLG-----ARLVES 197
Query: 87 SRRPVPL 93
S RPVPL
Sbjct: 198 SWRPVPL 204
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KG A HHAG +S +EE F++ L+K + +T TLAAG+N+PAR ++ + +A
Sbjct: 297 KGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEG 356
Query: 310 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG----VEPLVSQFT 364
+Q + +E QMAGRAGR +D G VL+ E E ++ V +++ T
Sbjct: 357 MQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVPELFEVYIEAEAEDVHSRIAEPT 416
Query: 365 ASYGMVLNLLA 375
A Y VL+L+A
Sbjct: 417 ALYTHVLSLVA 427
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE---VQIICLSATVANADELAGWIGQIHG 79
D+ ++V+DE+H + RG E +I + +Q+I LSAT+ N LAGW+
Sbjct: 134 DITLVVIDEIHLIDSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWL----- 188
Query: 80 KTELITSSRRPVPL 93
EL+TSS RPV L
Sbjct: 189 DAELVTSSWRPVDL 202
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L GV+ HHAG +SFIE+ F+ +KV+ AT TLAAG+N+PAR ++ +++
Sbjct: 284 LPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDL 343
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRG 333
G L++ E+ QM GRAGR G D G
Sbjct: 344 GITYLSNMEVKQMIGRAGRPGYDQYG 369
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIHG 79
+V ++V+DE+H + D RG E +I Y E +II LSATV+NA E+A W+
Sbjct: 135 EVGLMVIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWLN---- 190
Query: 80 KTELITSSRRPVPL 93
LI SS RPVPL
Sbjct: 191 -ASLIKSSFRPVPL 203
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 309
G A HHAG + +E F+ G +K++ +T TLAAG+N+PAR ++ S + ++ SG
Sbjct: 305 GTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGM 364
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYG 368
+ E QMAGRAGR +D G VL+ YE K + AG E + S+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEFVFLFEKYIEAGAEDIWSKLGTENA 424
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC-- 426
+ ++L+ +SN R+ EE +E +F + SN L+A + C
Sbjct: 425 LRTHILS-----TISN--------GFARTREELMDFLEATFFAFQYSNFGLSAVVDECLD 471
Query: 427 ------KIQKETDVLTSEISDDAIDR 446
++K+ D L S + + R
Sbjct: 472 FLRREGMLEKDPDALVSTVFGKLVSR 497
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHG 79
++ V+V DEVH + RG E + + Q++ LSATV NADELA W+
Sbjct: 137 EISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL----- 191
Query: 80 KTELITSSRRPVPL 93
EL+ S RP L
Sbjct: 192 DAELVLSEWRPTDL 205
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 309
G A HHAG + +E F+ G VK++ +T TLAAG+N+PAR ++ S + ++ SG
Sbjct: 305 GTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGM 364
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF-------AGVEPLVSQ 362
+ E QMAGRAGR +D G VL+ YE +LLF AG E + S+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYE------ELLFLFEKYIEAGAEDIWSK 418
Query: 363 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 422
+ ++L+ +SN R+ EE +E +F Y SN L+
Sbjct: 419 LGTENALRTHVLS-----TISN--------GFARTKEELMDFLEATFFAYQYSNFGLSVV 465
Query: 423 DELC--------KIQKETDVLTSEISDDAIDR 446
+ C +++++D L S + + R
Sbjct: 466 VDECLNFLRQEGMLEQDSDALISTMFGKLVSR 497
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE---VQIICLSATVANADELAGWIGQIHG 79
++ V+V+DEVH + RG E + K QI+ LSATV NADELA W+
Sbjct: 137 EISVVVVDEVHLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL----- 191
Query: 80 KTELITSSRRPVPL 93
EL+ S RP L
Sbjct: 192 DAELVLSEWRPTDL 205
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 135/331 (40%), Gaps = 71/331 (21%)
Query: 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIG 75
S L + ++V+DE+H + + SRG + E ++Y K QII +SAT+ N ++L ++
Sbjct: 411 SRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL- 469
Query: 76 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
K E TS RPV L + + + + M L+Y
Sbjct: 470 ----KAEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSY------------- 512
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
+ S M+ + +V + V +VI +
Sbjct: 513 -----KYSEALKKMDPDRLV------------------ALVTEVIPN---------YSCL 540
Query: 196 WFIFNRRGCDAAVQYLEDCNLLD-------ECEMSEVELALKRFRILYPDAVREPAIKGL 248
F +++ C+ + L C L E E EV +K R + V P +K
Sbjct: 541 VFCPSKKNCENVAEML--CKFLSKDYLNHREKEKCEV---IKSLRNIGNGKVC-PVLKRT 594
Query: 249 LKGVAAHH-AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+ A+H +G + +EE + G++ ++ T TLAAG+N+PAR +L +
Sbjct: 595 VPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVIL----RAPYV 650
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
L N+ QM GRAGR GID G +L+
Sbjct: 651 ANTFLKRNQYKQMVGRAGRAGIDTAGESILL 681
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HH+ K +E LF++G ++VV AT TLA G+NMP ++ V A
Sbjct: 1259 RGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVF-------AQNS 1311
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
+ L + QM+GRAGRRG D G V P+ + KL+ + V L F S +
Sbjct: 1312 VYLDALNYRQMSGRAGRRGQDLMGDVYFFDIPF---PKIGKLIKSNVPELRGHFPLSITL 1368
Query: 370 VLNLLAGAKVMHLSNESDD 388
VL L M L+++ DD
Sbjct: 1369 VLRL------MLLASKGDD 1381
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 40/199 (20%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 81
+ ++ DEVH L +WE ++I CP + LSAT++N + L W+ +
Sbjct: 883 IRYVIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV---- 934
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL--NYLQLSTSEVKPYKDGGSR 139
WY+ + ++ +H+ R+ +YLQ+ S G R
Sbjct: 935 ------------KWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVKQSYKVRLVLYGER 982
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP-----------QVIDTLWHL-- 186
+ KH + + H + + + I R P Q+ D ++ +
Sbjct: 983 YNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRESIQLYDAMFQIWK 1042
Query: 187 ---RSRDMLPAIWFIFNRR 202
R++++ P + FN +
Sbjct: 1043 SWPRAQELCPENFIHFNNK 1061
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 77/325 (23%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I+ + K V+++ LS +ANA +LA W+
Sbjct: 1456 VSILIIDEIHLLGD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNI 1514
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
S RPVPL + P G+H +++
Sbjct: 1515 NQMGLFNFRPSVRPVPLEVHIQG----FP-----GQHYCPRMA----------------- 1548
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 196
+++K + AIR + + R + L ++
Sbjct: 1549 -------------------------RMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLD 1583
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAH 255
I D Q+L+ +DE EM+++ VR+ +K L G+ H
Sbjct: 1584 LIAFLATEDDPKQWLK----MDEREMNDI-----------IGTVRDSNLKLTLAFGIGMH 1628
Query: 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR--IQLT 313
HAG + +EELF ++V+ AT TLA G+N PA ++ R +
Sbjct: 1629 HAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYP 1688
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLV 338
++ QM GRAGR D++G V++
Sbjct: 1689 ITDVLQMMGRAGRPQFDDQGKAVIL 1713
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 230 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
K+ R L+PD G + HHAG L +S +E LF G +KV+ T TLA G+
Sbjct: 778 KQLRELFPD------------GFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGV 825
Query: 290 NMPARTAVLSSLSKRTA--SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 347
N+PA V+ A + L ++ Q+ GRAGR D G +++ T ++
Sbjct: 826 NLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSH 884
Query: 348 CCKLLFAGVEPLVSQFTASYGMVLN 372
LL P+ SQF S LN
Sbjct: 885 YLTLL-TQQNPIESQFLESLADNLN 908
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
KGVA HHAG + +E F++ L+KV+ +T TLAAG+N+PAR ++ S + ++
Sbjct: 304 KGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFG 363
Query: 310 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
+Q + E QMAGRAGR +D G VL+ Y+
Sbjct: 364 MQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYD 398
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHG 79
++ +V+DE+H L +RG E I + +VQ++ LSATV NA E+A W+G
Sbjct: 137 EITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG---- 192
Query: 80 KTELITSSRRPVPL 93
L+ S RP L
Sbjct: 193 -AALVLSEWRPTDL 205
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 122/326 (37%), Gaps = 88/326 (26%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIG 75
DV +I+LDE+H L RG V E I+ K+V+++ LS VANA++LA W+
Sbjct: 1254 DVSLIILDEIHLLGS-DRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLN 1312
Query: 76 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 135
G S RPV PL + Y D
Sbjct: 1313 IRDGLFNF-RHSVRPV-------------PL------------------------EIYID 1334
Query: 136 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 195
G R + MN K + AI+ Q P +
Sbjct: 1335 GFPGRAYCPRMMSMN--------------KPAFQAIKTHSPTQ--------------PVL 1366
Query: 196 WFIFNRRGCD-AAVQYLEDCNLLDECE----MSEVELALKRFRILYPDAVREPAIK-GLL 249
F+ +RR A + C L D M E EL + V + ++K L
Sbjct: 1367 IFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEM------IVSEVEDKSLKLALP 1420
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA--S 307
G+A HHAG + EELF V+++ AT TLA G+N PA ++ A
Sbjct: 1421 FGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIG 1480
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRG 333
G + ++ QM GRAGR DN G
Sbjct: 1481 GYKDMDLTDVLQMLGRAGRPQFDNSG 1506
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL--SSL 301
+K L K + H+AG L + E LF G++K++ T TLA G+N+PA ++ + L
Sbjct: 580 LKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQL 639
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
+ L ++ Q+ GRAGR ++ ++ T
Sbjct: 640 YDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITT 678
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DEVH L D RG V E ++ + V+ I+ LSAT+ N ++A ++G
Sbjct: 415 VRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGV 473
Query: 77 IHGKTEL-ITSSRRPVPLTWYF 97
K +S+ RP P+ +F
Sbjct: 474 NRYKGLFYFSSAFRPCPIEQHF 495
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G A HHAG + +E+ F+ G +K++ +T TLAAG+N+PAR ++ + + ++ +
Sbjct: 305 GTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGM 364
Query: 311 Q-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
Q + E QMAGRAGR +D G VLV Y+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKSYK 398
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHG 79
++ V+V DEVH + RG E + K QI+ LSATV NADELA W+
Sbjct: 137 EISVVVADEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADELAVWL----- 191
Query: 80 KTELITSSRRPVPL 93
+ EL+ S RP L
Sbjct: 192 EAELVVSEWRPTEL 205
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
+L++ E+ EV L+R P + K + GVA HHAG + IE F++GL
Sbjct: 381 ILEQKELLEVMDQLRRL----PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGL 436
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
++V+ AT TL++G+N+PAR ++ + G L QM GRAGR+G+D G
Sbjct: 437 IRVLAATSTLSSGVNLPARRVII----RTPIFGGRPLDILTYKQMVGRAGRKGVDTVGES 492
Query: 336 VLV 338
+L+
Sbjct: 493 ILI 495
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 23/86 (26%)
Query: 26 VIVLDEVHYLSDISRGTVWEEI---IIYCPKE---------------VQIICLSATVANA 67
++V+DE+H L D RG + E + I Y ++ VQI+ +SAT+ N
Sbjct: 212 MVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNL 271
Query: 68 DELAGWIGQIHGKTELITSSRRPVPL 93
+ +A W+ EL + RPVPL
Sbjct: 272 ELVASWLN-----AELYHTDFRPVPL 292
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 238 DAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ V+ +K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T
Sbjct: 767 EQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 826
Query: 297 VLSSLS-KRTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
++ GR ++L++ ++ QM GRAGR D +G +L+ T + + LL
Sbjct: 827 IIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILI-TNHSELQFYLSLLNQ 885
Query: 355 GVEPLVSQFTASYGMVLNL-LAGAKVMHLSN 384
+ P+ SQF + +LN + V HL +
Sbjct: 886 QL-PIESQFISKLPDMLNAEIVLGTVQHLQD 915
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
GVA HHAG + +E+ F++ ++KV+ T TLAAG+N+PAR ++ + + G
Sbjct: 310 GVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGS 369
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
+ + E QMAGRAGR +D G VL+ Y+
Sbjct: 370 VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQI 77
L + V+V DEVH + +RG E + K +QI+ LSAT+ NA LA W+
Sbjct: 140 LSGLSVVVADEVHLIDSPNRGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKWM--- 196
Query: 78 HGKTELITSSRRPVPL 93
L+ S RP L
Sbjct: 197 --DAALVQSEWRPTTL 210
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 197 FIFNRRGCDAAVQYLED---CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK--- 250
F+ RR ++ +L D + D+ S E+A K + P + P LK
Sbjct: 230 FVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEV--PKSRGSPPTSTCLKLAE 287
Query: 251 ----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
G+A HHAG + IE+ F+ G + ++ AT +L G+N+P+RT V+ ++ T+
Sbjct: 288 CLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTS 347
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 345
G ++ + QM+GRAGR D+ G+ L+ ++ A
Sbjct: 348 QGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEA 386
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVANADELAGWIGQI 77
L +VD++++DE H + + +RG V E I V+I+ LSAT++N DE+AGW+
Sbjct: 124 LREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL--- 180
Query: 78 HGKTELITSSRRPVPL 93
++ RPVPL
Sbjct: 181 --DARVVEHDYRPVPL 194
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS- 302
+K LL G A HHAG + ++ +E+LF ++V+F+T TLA G+N+PA T ++
Sbjct: 767 LKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQI 826
Query: 303 KRTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
GR +L + ++ QM GRAGR D+RG +L+
Sbjct: 827 YNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILI 863
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPK-------EVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I++ + E +++ LSAT+ N ++A ++
Sbjct: 603 VRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRV 661
Query: 77 IHGKTELITSSRRPVPL 93
+S RPVPL
Sbjct: 662 KPEHLHFFDNSYRPVPL 678
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE----------VQIICLSATVANADELAG 72
+V + + D++H + S G V+E + C + V+++ LS+++ NA +L
Sbjct: 1441 NVKLFIADDLHMIG-ASNGAVFE---VVCSRTRYISSQLESAVRVVALSSSLTNARDLGM 1496
Query: 73 WIGQIHGKTELITSSRRPVPL 93
W+G T S RPVPL
Sbjct: 1497 WLGCSASATFNFMPSTRPVPL 1517
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
V +P+++ L++ G+ HHAG +S E+LF GL++V+ T TLA G+N+PA T ++
Sbjct: 788 VLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVII 847
Query: 299 SS---LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
S S QL+ ++ QM GRAGR D G +++
Sbjct: 848 KGTDVYSPEKGSWE-QLSPQDVLQMLGRAGRPRYDTFGEGIII 889
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII---IYCP----KEVQIICLSATVANADELAGWIGQ 76
+++++ D+ H +S G V+E +I I+ K+++ +CLS +ANA + W G
Sbjct: 1468 LELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGM 1527
Query: 77 IHGKTELITSSRRPVPL 93
+ S R PL
Sbjct: 1528 TKSNIYNFSPSERIEPL 1544
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
D P + F R+G A L +D + E + L++ Y +VR+ ++ +
Sbjct: 526 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQK----YAYSVRDSKLRDI 578
Query: 249 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
LK G A HHAG + +E F G + V+F T TLA G+N+PA V+ S
Sbjct: 579 LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGG 638
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ + ++ QM GRAGR D V++
Sbjct: 639 LFEEYSETDILQMIGRAGRPQFDTTATAVIM 669
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ----------------IICLSATVANA 67
V + ++DEVH + D +RG E +++ K VQ + +SAT+ NA
Sbjct: 405 VRLFLIDEVHIVKDENRGPTLE-VVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNA 463
Query: 68 DELAGWI--GQIHGKTELITSSRRPVPL 93
+++A W+ G+ + S RPV L
Sbjct: 464 EDIAEWLSDGERPAVCLKMDESHRPVKL 491
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 238 DAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ V+ I+ L + G++ HHAG L ++ +E+ F G +KV+ T TLA G+N+PA T
Sbjct: 766 EKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTV 825
Query: 297 VLSSLSKRTA--SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
++ A G + L +++ Q+ GRAGR D G L+ +
Sbjct: 826 IIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTS 871
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR- 309
G+ HHAG ++ +E LF ++++ +T TLA G+N+PA ++ +
Sbjct: 1614 GIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKR 1673
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTP 341
+ ++ QM GRAGR D G +V+V P
Sbjct: 1674 YVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEP 1707
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +I++DE+H L + RG V E I+ ++V+ I+ LSAT+ N ++A +I
Sbjct: 611 VRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRA 669
Query: 77 IHGKTELITSSRRPVPLTWYF 97
T SS RPVPLT F
Sbjct: 670 PASGTHFFDSSYRPVPLTQNF 690
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H + ++ RG + E I+ ++++ LS +ANA +L+ W+G
Sbjct: 1447 VSLLIIDEIHLIGEL-RGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGI 1505
Query: 77 IHGKTELITSSRRPVPL 93
S RPVP+
Sbjct: 1506 DRVGLFNFRPSCRPVPI 1522
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L + +
Sbjct: 639 GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL----RAPYVAKE 694
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASY 367
L N+ QM GRAGR GID G +L+ + + E K L LV +FT
Sbjct: 695 FLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITKPLENCYSHLVQEFTKGI 754
Query: 368 GMVLNLLAGAKV 379
+ L G K+
Sbjct: 755 QTLFLSLIGLKI 766
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 18 ESGLFD-VDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G D + ++V+DE+H + + SRG E I+Y K QII +SAT+ N ++L +
Sbjct: 450 ETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKF 509
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
+ + E TS RPV L Y + + + M LNY
Sbjct: 510 L-----QAEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNY 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,896,682
Number of Sequences: 539616
Number of extensions: 13474596
Number of successful extensions: 42916
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 42581
Number of HSP's gapped (non-prelim): 330
length of query: 924
length of database: 191,569,459
effective HSP length: 127
effective length of query: 797
effective length of database: 123,038,227
effective search space: 98061466919
effective search space used: 98061466919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)