Query 002426
Match_columns 924
No_of_seqs 416 out of 2738
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948 Nuclear exosomal RNA h 100.0 9E-149 2E-153 1247.4 45.5 777 3-921 221-1036(1041)
2 KOG0947 Cytoplasmic exosomal R 100.0 2E-127 4E-132 1099.2 55.8 827 3-924 389-1246(1248)
3 COG4581 Superfamily II RNA hel 100.0 8E-105 2E-109 952.7 54.6 793 3-921 215-1036(1041)
4 PF08148 DSHCT: DSHCT (NUC185) 100.0 2.3E-42 5.1E-47 351.5 11.7 170 747-922 1-176 (180)
5 PRK02362 ski2-like helicase; P 100.0 1.2E-39 2.6E-44 400.7 34.1 320 18-415 132-458 (737)
6 COG1204 Superfamily II helicas 100.0 4E-39 8.6E-44 388.6 18.7 321 17-414 140-468 (766)
7 PRK00254 ski2-like helicase; P 100.0 1.2E-36 2.5E-41 373.3 30.6 310 18-414 133-447 (720)
8 PRK01172 ski2-like helicase; P 100.0 1.7E-36 3.7E-41 370.1 30.3 305 18-414 130-437 (674)
9 KOG0952 DNA/RNA helicase MER3/ 100.0 1.4E-36 3.1E-41 355.0 21.2 296 18-393 233-538 (1230)
10 KOG0951 RNA helicase BRR2, DEA 100.0 2.7E-35 5.8E-40 347.1 17.5 375 19-468 433-850 (1674)
11 KOG0950 DNA polymerase theta/e 100.0 3.8E-33 8.1E-38 325.9 16.6 289 18-366 336-634 (1008)
12 COG1202 Superfamily II helicas 100.0 8E-33 1.7E-37 305.9 17.3 234 18-363 333-583 (830)
13 KOG0949 Predicted helicase, DE 100.0 8.1E-29 1.8E-33 287.1 23.6 341 18-373 627-1076(1330)
14 PRK09751 putative ATP-dependen 100.0 2.9E-27 6.2E-32 298.4 24.2 277 18-361 119-408 (1490)
15 TIGR03817 DECH_helic helicase/ 99.9 5.3E-26 1.1E-30 277.7 24.8 225 20-341 154-385 (742)
16 PRK13767 ATP-dependent helicas 99.9 1.2E-25 2.7E-30 279.6 27.4 273 20-410 169-456 (876)
17 PRK11776 ATP-dependent RNA hel 99.9 2.7E-25 5.8E-30 260.4 20.6 205 18-342 142-349 (460)
18 PRK10590 ATP-dependent RNA hel 99.9 3.7E-25 8.1E-30 258.6 21.0 206 18-341 144-351 (456)
19 KOG0331 ATP-dependent RNA heli 99.9 2.7E-25 5.8E-30 252.6 18.7 213 17-341 233-447 (519)
20 PLN00206 DEAD-box ATP-dependen 99.9 3.6E-25 7.9E-30 262.1 20.0 207 18-342 265-475 (518)
21 COG0513 SrmB Superfamily II DN 99.9 7.4E-25 1.6E-29 258.1 21.2 210 18-346 169-384 (513)
22 PTZ00424 helicase 45; Provisio 99.9 3.4E-25 7.4E-30 255.2 17.2 206 18-342 165-374 (401)
23 PRK11192 ATP-dependent RNA hel 99.9 1.6E-24 3.6E-29 252.1 21.2 203 20-341 144-351 (434)
24 KOG0330 ATP-dependent RNA heli 99.9 3.8E-25 8.1E-30 236.5 14.1 206 19-343 200-408 (476)
25 KOG0326 ATP-dependent RNA heli 99.9 6E-25 1.3E-29 228.9 15.0 228 19-366 223-455 (459)
26 PRK11634 ATP-dependent RNA hel 99.9 1.8E-24 3.9E-29 259.6 20.3 206 18-342 144-352 (629)
27 PRK04537 ATP-dependent RNA hel 99.9 2.6E-24 5.5E-29 256.7 20.8 202 20-341 156-363 (572)
28 PTZ00110 helicase; Provisional 99.9 2.4E-24 5.2E-29 256.0 20.3 210 18-343 272-485 (545)
29 KOG0333 U5 snRNP-like RNA heli 99.9 8.1E-24 1.8E-28 233.2 20.7 204 20-343 393-625 (673)
30 KOG0328 Predicted ATP-dependen 99.9 2.2E-24 4.8E-29 221.5 14.6 208 18-341 164-372 (400)
31 PRK04837 ATP-dependent RNA hel 99.9 6E-24 1.3E-28 246.5 18.7 204 18-342 152-362 (423)
32 TIGR00614 recQ_fam ATP-depende 99.9 2.9E-23 6.3E-28 243.4 24.4 121 190-355 225-345 (470)
33 PRK01297 ATP-dependent RNA hel 99.9 1.8E-23 3.9E-28 245.8 21.3 205 18-342 232-442 (475)
34 KOG0338 ATP-dependent RNA heli 99.9 5.9E-23 1.3E-27 225.5 20.4 222 18-354 322-544 (691)
35 PLN03137 ATP-dependent DNA hel 99.9 5.4E-23 1.2E-27 250.2 21.7 130 192-367 681-810 (1195)
36 COG1201 Lhr Lhr-like helicases 99.9 2.6E-22 5.7E-27 240.0 24.4 216 18-343 144-363 (814)
37 PRK11057 ATP-dependent DNA hel 99.9 3.2E-22 7E-27 240.9 24.1 125 185-354 230-354 (607)
38 TIGR01389 recQ ATP-dependent D 99.9 2.7E-21 5.9E-26 233.2 24.4 109 190-342 223-331 (591)
39 KOG0332 ATP-dependent RNA heli 99.9 5E-21 1.1E-25 203.9 18.1 213 21-346 230-447 (477)
40 KOG0345 ATP-dependent RNA heli 99.9 7.7E-21 1.7E-25 207.9 19.9 224 21-363 155-384 (567)
41 KOG0342 ATP-dependent RNA heli 99.9 3E-21 6.4E-26 212.6 16.7 218 20-353 227-446 (543)
42 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.4E-21 1.6E-25 232.7 22.1 216 18-341 108-335 (819)
43 KOG0343 RNA Helicase [RNA proc 99.9 1.2E-20 2.6E-25 209.1 20.1 220 21-359 213-438 (758)
44 KOG0340 ATP-dependent RNA heli 99.9 6.6E-21 1.4E-25 202.0 15.8 212 18-342 148-361 (442)
45 KOG0336 ATP-dependent RNA heli 99.8 1.8E-20 3.8E-25 201.0 17.6 203 18-341 362-571 (629)
46 PRK11664 ATP-dependent RNA hel 99.8 6.9E-20 1.5E-24 224.7 20.0 216 18-341 111-338 (812)
47 KOG0335 ATP-dependent RNA heli 99.8 3.8E-20 8.1E-25 207.4 15.5 209 18-340 221-442 (482)
48 PHA02653 RNA helicase NPH-II; 99.8 1.5E-19 3.3E-24 216.4 21.8 220 19-342 287-514 (675)
49 TIGR00580 mfd transcription-re 99.8 2.1E-19 4.4E-24 222.3 22.3 201 18-342 568-770 (926)
50 COG0514 RecQ Superfamily II DN 99.8 4.7E-19 1E-23 205.4 19.7 112 188-343 227-338 (590)
51 KOG0341 DEAD-box protein abstr 99.8 1.2E-19 2.6E-24 193.5 13.6 206 20-342 323-528 (610)
52 PRK10689 transcription-repair 99.8 8E-19 1.7E-23 221.4 21.8 109 192-341 810-918 (1147)
53 KOG0347 RNA helicase [RNA proc 99.8 1.1E-19 2.4E-24 201.6 11.2 178 190-436 462-643 (731)
54 PRK11131 ATP-dependent RNA hel 99.8 1.5E-18 3.2E-23 216.5 21.8 218 18-341 181-410 (1294)
55 TIGR01587 cas3_core CRISPR-ass 99.8 1.6E-18 3.5E-23 196.8 20.2 108 191-341 222-335 (358)
56 PRK10917 ATP-dependent DNA hel 99.8 3.6E-18 7.9E-23 208.1 24.5 82 250-341 506-588 (681)
57 KOG0348 ATP-dependent RNA heli 99.8 6E-19 1.3E-23 195.2 15.5 141 190-355 424-565 (708)
58 KOG0344 ATP-dependent RNA heli 99.8 5.8E-19 1.3E-23 198.9 15.5 206 19-341 284-494 (593)
59 KOG0327 Translation initiation 99.8 1.1E-18 2.4E-23 188.0 16.4 203 18-341 164-369 (397)
60 TIGR00643 recG ATP-dependent D 99.8 3.3E-18 7.1E-23 207.2 21.0 82 250-341 483-565 (630)
61 TIGR01967 DEAH_box_HrpA ATP-de 99.8 3.6E-18 7.8E-23 213.8 18.5 218 18-341 174-403 (1283)
62 KOG4284 DEAD box protein [Tran 99.8 2.5E-18 5.4E-23 193.4 15.0 213 20-345 164-382 (980)
63 KOG0346 RNA helicase [RNA proc 99.8 7.9E-18 1.7E-22 182.9 18.3 207 19-343 166-411 (569)
64 KOG0339 ATP-dependent RNA heli 99.8 4.1E-18 8.8E-23 187.4 16.0 207 18-343 365-576 (731)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.1E-17 2.5E-22 201.5 20.7 103 189-338 270-388 (844)
66 KOG0334 RNA helicase [RNA proc 99.7 5E-17 1.1E-21 194.0 15.3 205 19-341 511-719 (997)
67 KOG0951 RNA helicase BRR2, DEA 99.7 7.4E-17 1.6E-21 192.5 14.6 282 20-392 1250-1540(1674)
68 KOG0922 DEAH-box RNA helicase 99.7 3.4E-16 7.4E-21 179.4 18.9 252 6-375 149-417 (674)
69 KOG0350 DEAD-box ATP-dependent 99.7 7E-17 1.5E-21 178.1 12.8 128 184-353 422-550 (620)
70 TIGR03158 cas3_cyano CRISPR-as 99.7 1E-15 2.2E-20 173.4 18.1 88 189-325 270-357 (357)
71 COG1205 Distinct helicase fami 99.7 1.2E-15 2.5E-20 188.0 18.0 221 19-340 191-420 (851)
72 COG1643 HrpA HrpA-like helicas 99.6 1.5E-15 3.4E-20 183.6 16.4 213 18-341 157-386 (845)
73 KOG0953 Mitochondrial RNA heli 99.6 1.7E-15 3.7E-20 169.0 14.2 138 195-367 360-501 (700)
74 PHA02558 uvsW UvsW helicase; P 99.6 3E-15 6.4E-20 177.0 17.2 105 182-329 336-441 (501)
75 KOG0337 ATP-dependent RNA heli 99.6 1.1E-15 2.3E-20 165.8 11.6 210 19-345 160-371 (529)
76 TIGR00631 uvrb excinuclease AB 99.6 1.5E-14 3.3E-19 174.2 20.0 112 190-342 441-553 (655)
77 KOG0351 ATP-dependent DNA heli 99.6 1.2E-14 2.6E-19 178.1 18.5 121 190-355 484-604 (941)
78 COG0556 UvrB Helicase subunit 99.6 3.8E-14 8.2E-19 158.2 20.0 220 175-472 431-657 (663)
79 PRK05298 excinuclease ABC subu 99.6 5.6E-14 1.2E-18 170.4 23.1 121 179-341 435-556 (652)
80 PF13234 rRNA_proc-arch: rRNA- 99.6 1.1E-14 2.5E-19 158.4 10.6 257 402-725 1-267 (268)
81 KOG0923 mRNA splicing factor A 99.5 1E-13 2.2E-18 157.4 16.6 257 6-375 364-634 (902)
82 KOG0349 Putative DEAD-box RNA 99.5 4.3E-14 9.3E-19 153.1 11.7 116 184-340 498-613 (725)
83 PRK13766 Hef nuclease; Provisi 99.5 6.5E-13 1.4E-17 165.8 21.5 116 189-341 363-478 (773)
84 COG1111 MPH1 ERCC4-like helica 99.5 4.8E-13 1E-17 149.5 17.3 129 178-342 352-481 (542)
85 COG1197 Mfd Transcription-repa 99.5 1E-12 2.3E-17 160.3 18.6 204 16-343 709-914 (1139)
86 TIGR00603 rad25 DNA repair hel 99.5 2.3E-12 5E-17 154.6 20.3 106 190-342 495-607 (732)
87 PF00271 Helicase_C: Helicase 99.4 2.5E-13 5.4E-18 119.1 8.8 73 248-328 6-78 (78)
88 cd00079 HELICc Helicase superf 99.4 5.2E-13 1.1E-17 128.1 11.5 104 190-337 27-130 (131)
89 PRK09401 reverse gyrase; Revie 99.4 6.7E-13 1.4E-17 168.6 15.4 87 192-325 329-429 (1176)
90 KOG0352 ATP-dependent DNA heli 99.4 8.9E-13 1.9E-17 143.1 13.9 106 193-342 257-362 (641)
91 COG1200 RecG RecG-like helicas 99.4 6.7E-12 1.4E-16 146.0 21.4 84 250-343 508-592 (677)
92 KOG0353 ATP-dependent DNA heli 99.4 1.5E-12 3.2E-17 139.1 14.1 107 190-340 316-465 (695)
93 PRK12898 secA preprotein trans 99.4 1.2E-12 2.5E-17 155.4 13.6 107 191-343 473-587 (656)
94 KOG0924 mRNA splicing factor A 99.4 2.6E-12 5.7E-17 146.1 14.8 249 18-375 463-725 (1042)
95 COG4098 comFA Superfamily II D 99.4 2.1E-11 4.5E-16 130.1 20.1 111 189-340 303-414 (441)
96 PRK14701 reverse gyrase; Provi 99.4 5.2E-12 1.1E-16 163.9 17.7 100 191-329 330-445 (1638)
97 KOG0920 ATP-dependent RNA heli 99.4 3.7E-12 8.1E-17 154.0 14.6 251 17-341 281-543 (924)
98 PRK09694 helicase Cas3; Provis 99.4 1.6E-11 3.5E-16 151.2 19.7 98 190-329 559-664 (878)
99 PRK04914 ATP-dependent helicas 99.3 6.2E-11 1.3E-15 147.0 22.5 111 183-337 485-598 (956)
100 TIGR00595 priA primosomal prot 99.3 4E-11 8.7E-16 141.3 17.9 90 250-341 285-380 (505)
101 KOG0354 DEAD-box like helicase 99.3 4.1E-11 9E-16 141.4 17.0 118 189-341 411-528 (746)
102 PRK09200 preprotein translocas 99.3 1.7E-11 3.7E-16 148.5 13.9 108 190-343 427-542 (790)
103 PRK05580 primosome assembly pr 99.3 1.1E-10 2.3E-15 142.6 18.9 89 251-341 454-548 (679)
104 KOG4150 Predicted ATP-dependen 99.2 1.7E-10 3.8E-15 129.0 16.9 224 20-341 409-641 (1034)
105 TIGR01054 rgy reverse gyrase. 99.2 9.8E-11 2.1E-15 149.3 16.3 70 192-299 327-404 (1171)
106 TIGR03714 secA2 accessory Sec 99.2 7.8E-11 1.7E-15 141.6 14.2 108 189-343 422-538 (762)
107 smart00490 HELICc helicase sup 99.2 6.3E-11 1.4E-15 103.8 8.1 72 249-328 11-82 (82)
108 KOG0329 ATP-dependent RNA heli 99.1 5.1E-11 1.1E-15 122.0 4.7 56 279-344 302-357 (387)
109 TIGR00963 secA preprotein tran 99.1 6.7E-10 1.4E-14 132.9 14.2 109 189-343 403-518 (745)
110 PRK12906 secA preprotein trans 99.0 9.8E-10 2.1E-14 132.6 12.9 108 190-343 439-554 (796)
111 PRK12900 secA preprotein trans 99.0 8.7E-09 1.9E-13 125.3 20.6 108 190-343 597-712 (1025)
112 COG1061 SSL2 DNA or RNA helica 99.0 3.5E-09 7.5E-14 123.4 16.7 95 190-327 282-376 (442)
113 COG1203 CRISPR-associated heli 99.0 2.5E-09 5.5E-14 131.8 14.9 109 189-342 438-550 (733)
114 KOG0926 DEAH-box RNA helicase 98.9 4.6E-09 1E-13 122.1 10.3 87 252-341 607-703 (1172)
115 KOG0925 mRNA splicing factor A 98.9 2.9E-08 6.3E-13 110.2 16.1 223 6-341 145-386 (699)
116 PRK11448 hsdR type I restricti 98.8 6E-08 1.3E-12 123.4 18.1 106 189-329 696-802 (1123)
117 KOG0952 DNA/RNA helicase MER3/ 98.6 5.1E-09 1.1E-13 125.4 -1.1 82 18-102 1041-1129(1230)
118 PRK13104 secA preprotein trans 98.4 1.8E-06 3.9E-11 105.4 13.0 117 179-342 433-587 (896)
119 PRK12904 preprotein translocas 98.3 3.7E-06 8E-11 102.6 13.7 108 189-342 428-573 (830)
120 PRK13107 preprotein translocas 98.3 4.2E-06 9.1E-11 102.0 13.3 118 178-342 437-591 (908)
121 TIGR01407 dinG_rel DnaQ family 98.3 1.8E-05 4E-10 99.8 18.5 143 178-355 661-827 (850)
122 PLN03142 Probable chromatin-re 98.0 6.1E-05 1.3E-09 94.9 14.7 110 190-341 486-598 (1033)
123 TIGR00348 hsdR type I site-spe 97.9 0.00015 3.3E-09 89.0 15.0 80 264-352 579-661 (667)
124 COG1198 PriA Primosomal protei 97.7 0.00073 1.6E-08 82.2 17.5 89 251-341 508-602 (730)
125 COG4096 HsdR Type I site-speci 97.6 0.0007 1.5E-08 81.3 14.8 147 178-366 408-565 (875)
126 PRK08074 bifunctional ATP-depe 97.6 0.00099 2.2E-08 84.9 16.9 144 178-355 739-906 (928)
127 TIGR02562 cas3_yersinia CRISPR 97.5 0.00045 9.8E-09 85.6 11.6 72 251-333 788-885 (1110)
128 KOG0921 Dosage compensation co 97.5 0.00012 2.6E-09 87.3 5.1 89 250-341 675-773 (1282)
129 cd00268 DEADc DEAD-box helicas 97.3 0.00035 7.5E-09 72.6 5.8 55 18-74 138-192 (203)
130 PRK11747 dinG ATP-dependent DN 97.2 0.0091 2E-07 73.9 18.4 139 178-356 522-688 (697)
131 PRK07246 bifunctional ATP-depe 97.2 0.0077 1.7E-07 75.7 17.2 137 179-355 636-796 (820)
132 COG1199 DinG Rad3-related DNA 97.1 0.0046 1E-07 76.3 14.4 130 178-344 466-620 (654)
133 PF00270 DEAD: DEAD/DEAH box h 97.0 0.00047 1E-08 69.1 3.2 46 20-65 116-163 (169)
134 KOG1123 RNA polymerase II tran 96.9 0.0076 1.7E-07 68.4 12.0 70 251-327 564-634 (776)
135 PF13307 Helicase_C_2: Helicas 96.8 0.0046 1E-07 62.6 8.2 123 187-344 5-153 (167)
136 PRK12903 secA preprotein trans 96.6 0.015 3.3E-07 71.2 12.4 115 179-341 415-538 (925)
137 TIGR00604 rad3 DNA repair heli 96.5 0.054 1.2E-06 67.4 17.0 137 178-343 509-676 (705)
138 KOG1000 Chromatin remodeling p 96.4 0.022 4.7E-07 64.9 10.8 129 189-360 490-621 (689)
139 PRK12326 preprotein translocas 96.4 0.042 9E-07 66.6 13.8 116 179-341 416-546 (764)
140 PF02399 Herpes_ori_bp: Origin 96.2 0.064 1.4E-06 65.5 14.5 104 191-341 282-387 (824)
141 smart00487 DEXDc DEAD-like hel 96.1 0.0095 2.1E-07 60.3 6.3 55 20-74 126-181 (201)
142 PRK12899 secA preprotein trans 95.5 0.1 2.2E-06 64.9 12.3 117 179-342 557-681 (970)
143 PRK12901 secA preprotein trans 95.3 0.14 3.1E-06 64.0 12.7 118 178-342 616-741 (1112)
144 cd00046 DEXDc DEAD-like helica 94.4 0.037 8E-07 52.4 3.6 45 20-64 100-144 (144)
145 PF06862 DUF1253: Protein of u 94.4 2.2 4.7E-05 49.7 18.4 113 188-343 297-416 (442)
146 PRK13103 secA preprotein trans 94.3 0.32 6.9E-06 60.6 12.1 119 178-343 437-592 (913)
147 PRK14873 primosome assembly pr 93.1 0.76 1.6E-05 56.5 12.4 67 265-339 462-536 (665)
148 smart00492 HELICc3 helicase su 92.8 0.36 7.9E-06 47.4 7.5 89 251-340 23-137 (141)
149 PF04851 ResIII: Type III rest 92.6 0.12 2.7E-06 52.0 4.1 39 21-65 144-183 (184)
150 COG1110 Reverse gyrase [DNA re 91.2 0.62 1.3E-05 58.0 8.3 73 193-304 337-418 (1187)
151 smart00491 HELICc2 helicase su 90.3 0.7 1.5E-05 45.4 6.6 81 259-340 28-138 (142)
152 TIGR03117 cas_csf4 CRISPR-asso 90.0 3.2 7E-05 50.7 13.1 127 179-341 458-616 (636)
153 KOG0384 Chromodomain-helicase 89.5 2 4.3E-05 54.6 10.8 117 183-342 692-811 (1373)
154 PF07652 Flavi_DEAD: Flaviviru 89.4 0.28 6E-06 48.1 2.8 46 18-66 90-138 (148)
155 COG0553 HepA Superfamily II DN 89.1 3.5 7.7E-05 52.5 13.4 106 193-340 713-820 (866)
156 KOG0392 SNF2 family DNA-depend 87.6 3.3 7.2E-05 52.7 10.9 108 192-341 1341-1453(1549)
157 KOG0385 Chromatin remodeling c 87.6 4.8 0.0001 49.0 11.8 117 182-341 479-598 (971)
158 CHL00122 secA preprotein trans 85.4 7.6 0.00016 48.7 12.5 76 179-291 413-490 (870)
159 TIGR00596 rad1 DNA repair prot 83.9 9.6 0.00021 48.1 12.7 49 17-65 25-73 (814)
160 PF13871 Helicase_C_4: Helicas 82.0 2.1 4.6E-05 46.7 5.3 62 268-329 54-115 (278)
161 KOG0390 DNA repair protein, SN 80.6 20 0.00043 44.6 13.3 83 249-339 619-704 (776)
162 PF13872 AAA_34: P-loop contai 80.6 1.9 4E-05 47.5 4.2 40 25-65 174-221 (303)
163 PF04408 HA2: Helicase associa 80.5 1.9 4.1E-05 39.8 3.7 59 738-800 3-61 (102)
164 KOG0388 SNF2 family DNA-depend 78.4 19 0.00042 43.6 11.7 115 183-340 1037-1152(1185)
165 COG1202 Superfamily II helicas 78.4 3.6 7.8E-05 48.5 5.8 181 729-911 612-823 (830)
166 COG4889 Predicted helicase [Ge 75.6 4.4 9.5E-05 49.9 5.6 80 251-338 499-584 (1518)
167 KOG0389 SNF2 family DNA-depend 75.1 20 0.00044 44.0 10.9 106 251-365 803-910 (941)
168 KOG2340 Uncharacterized conser 74.9 5.8 0.00012 46.4 6.1 68 268-343 595-669 (698)
169 PRK10917 ATP-dependent DNA hel 74.9 8.9 0.00019 47.8 8.5 79 191-299 310-389 (681)
170 PRK12902 secA preprotein trans 73.9 26 0.00056 44.2 11.8 38 178-216 427-464 (939)
171 TIGR00595 priA primosomal prot 72.3 56 0.0012 39.2 14.0 74 191-298 25-98 (505)
172 PF00176 SNF2_N: SNF2 family N 67.2 6.5 0.00014 42.9 4.4 50 23-75 134-185 (299)
173 smart00847 HA2 Helicase associ 66.5 15 0.00032 32.8 5.9 60 738-800 3-62 (92)
174 PF12029 DUF3516: Domain of un 66.2 6.7 0.00014 45.0 4.2 30 346-375 40-69 (461)
175 PRK05580 primosome assembly pr 65.5 30 0.00066 43.0 10.2 74 192-299 191-265 (679)
176 PRK04914 ATP-dependent helicas 64.1 6.5 0.00014 50.4 4.1 52 23-75 272-328 (956)
177 COG0513 SrmB Superfamily II DN 63.0 26 0.00057 42.1 8.8 72 194-299 102-180 (513)
178 PRK14873 primosome assembly pr 62.1 31 0.00067 42.8 9.2 63 191-286 188-251 (665)
179 KOG0391 SNF2 family DNA-depend 60.1 79 0.0017 40.9 11.8 115 183-341 1269-1386(1958)
180 TIGR00643 recG ATP-dependent D 59.5 23 0.00049 43.8 7.6 50 250-299 313-363 (630)
181 TIGR00580 mfd transcription-re 59.2 37 0.00081 43.7 9.5 49 251-299 530-579 (926)
182 COG1110 Reverse gyrase [DNA re 57.8 24 0.00053 44.7 7.2 71 188-286 122-192 (1187)
183 KOG1002 Nucleotide excision re 55.9 77 0.0017 37.2 10.1 79 254-340 667-747 (791)
184 KOG0387 Transcription-coupled 54.1 95 0.0021 38.6 11.0 109 189-340 544-656 (923)
185 COG1198 PriA Primosomal protei 51.2 36 0.00078 42.4 7.3 92 250-350 271-366 (730)
186 TIGR03643 conserved hypothetic 50.7 23 0.00051 30.3 3.8 30 857-886 8-37 (72)
187 TIGR01054 rgy reverse gyrase. 50.0 40 0.00086 44.6 7.9 68 191-285 121-188 (1171)
188 PRK14701 reverse gyrase; Provi 49.3 54 0.0012 44.9 9.0 69 190-286 121-189 (1638)
189 PF10985 DUF2805: Protein of u 49.0 25 0.00055 30.2 3.8 30 857-886 7-36 (73)
190 smart00421 HTH_LUXR helix_turn 47.6 57 0.0012 25.4 5.8 44 848-891 4-47 (58)
191 PRK10689 transcription-repair 46.8 50 0.0011 43.7 8.0 51 251-301 679-731 (1147)
192 PRK11512 DNA-binding transcrip 46.5 65 0.0014 31.4 7.1 66 728-796 65-139 (144)
193 COG0653 SecA Preprotein transl 45.4 43 0.00092 42.0 6.6 104 190-340 428-543 (822)
194 PRK11664 ATP-dependent RNA hel 44.8 43 0.00093 42.6 6.8 66 732-800 384-449 (812)
195 PRK04217 hypothetical protein; 43.9 69 0.0015 30.1 6.3 48 848-895 43-91 (110)
196 PF04420 CHD5: CHD5-like prote 39.9 72 0.0016 32.1 6.3 50 423-481 40-89 (161)
197 PF13518 HTH_28: Helix-turn-he 39.4 64 0.0014 25.1 4.8 35 854-888 4-38 (52)
198 COG0610 Type I site-specific r 39.3 1.3E+02 0.0027 39.3 9.8 92 256-356 573-667 (962)
199 cd06170 LuxR_C_like C-terminal 39.2 80 0.0017 24.6 5.4 35 854-888 7-41 (57)
200 TIGR01970 DEAH_box_HrpB ATP-de 38.4 46 0.001 42.3 5.6 63 733-800 382-444 (819)
201 cd06171 Sigma70_r4 Sigma70, re 38.0 73 0.0016 24.2 4.9 39 852-890 15-54 (55)
202 KOG1015 Transcription regulato 37.9 1.2E+02 0.0026 38.5 8.5 134 179-336 1131-1271(1567)
203 TIGR01967 DEAH_box_HrpA ATP-de 36.5 3E+02 0.0065 36.9 12.5 64 733-800 450-516 (1283)
204 PRK03573 transcriptional regul 36.5 1.2E+02 0.0026 29.4 7.2 68 726-797 55-131 (144)
205 PF04545 Sigma70_r4: Sigma-70, 34.3 91 0.002 24.3 4.8 37 856-892 14-50 (50)
206 PF13384 HTH_23: Homeodomain-l 33.0 34 0.00075 26.6 2.2 34 854-887 9-42 (50)
207 PF13173 AAA_14: AAA domain 32.8 34 0.00074 32.5 2.6 37 23-65 61-100 (128)
208 PRK00254 ski2-like helicase; P 32.0 3.9E+02 0.0084 33.7 12.4 173 733-922 456-644 (720)
209 PF09848 DUF2075: Uncharacteri 31.2 50 0.0011 37.5 4.0 19 19-37 79-97 (352)
210 PLN03142 Probable chromatin-re 28.8 85 0.0019 40.9 5.8 50 23-75 291-342 (1033)
211 TIGR01389 recQ ATP-dependent D 28.3 1.5E+02 0.0032 36.3 7.7 60 192-285 54-113 (591)
212 PRK07003 DNA polymerase III su 28.0 36 0.00077 42.5 2.2 35 23-61 119-156 (830)
213 PF13401 AAA_22: AAA domain; P 27.4 60 0.0013 30.4 3.3 34 25-61 89-123 (131)
214 COG5570 Uncharacterized small 26.9 2E+02 0.0044 23.1 5.3 48 672-722 7-55 (57)
215 KOG0343 RNA Helicase [RNA proc 26.4 86 0.0019 37.4 4.7 35 179-213 124-163 (758)
216 TIGR00614 recQ_fam ATP-depende 25.4 1.8E+02 0.0039 34.5 7.4 60 192-285 52-111 (470)
217 PRK01172 ski2-like helicase; P 25.2 6.1E+02 0.013 31.6 12.4 125 734-883 446-571 (674)
218 PRK05642 DNA replication initi 25.2 53 0.0011 35.0 2.7 47 20-66 94-141 (234)
219 PF10805 DUF2730: Protein of u 24.6 3E+02 0.0065 25.6 7.2 50 670-726 42-91 (106)
220 PRK02362 ski2-like helicase; P 24.5 3.2E+02 0.0069 34.5 9.8 69 853-921 581-650 (737)
221 PRK06893 DNA replication initi 24.3 61 0.0013 34.4 2.9 43 20-65 88-135 (229)
222 cd03572 ENTH_epsin_related ENT 24.3 1.3E+02 0.0028 28.8 4.8 40 875-914 69-117 (122)
223 PHA03368 DNA packaging termina 24.1 50 0.0011 40.5 2.3 52 23-79 352-404 (738)
224 KOG0389 SNF2 family DNA-depend 24.0 93 0.002 38.7 4.5 52 22-75 523-575 (941)
225 COG1846 MarR Transcriptional r 23.7 3E+02 0.0065 25.0 7.3 61 725-789 44-113 (126)
226 PRK12323 DNA polymerase III su 23.3 44 0.00095 41.1 1.7 36 22-61 123-161 (700)
227 PRK15483 type III restriction- 23.0 87 0.0019 40.3 4.2 37 26-66 204-240 (986)
228 COG2909 MalT ATP-dependent tra 23.0 92 0.002 39.1 4.3 41 25-65 131-171 (894)
229 KOG0924 mRNA splicing factor A 22.8 3E+02 0.0065 34.0 8.2 114 734-851 745-891 (1042)
230 PRK14958 DNA polymerase III su 22.3 50 0.0011 39.6 2.0 39 22-61 118-156 (509)
231 PRK10590 ATP-dependent RNA hel 21.3 4.4E+02 0.0095 31.0 9.6 73 193-299 77-155 (456)
232 KOG4253 Tryptophan-rich basic 21.3 5.2E+02 0.011 25.8 8.2 57 675-742 49-105 (175)
233 PF12246 MKT1_C: Temperature d 21.3 64 0.0014 34.7 2.3 45 739-784 1-53 (243)
234 PF04420 CHD5: CHD5-like prote 21.0 4.4E+02 0.0094 26.5 8.1 51 670-731 40-90 (161)
235 KOG0923 mRNA splicing factor A 20.8 8.3E+02 0.018 30.3 11.2 130 734-897 654-787 (902)
236 smart00529 HTH_DTXR Helix-turn 20.7 2.9E+02 0.0063 24.4 6.3 64 732-797 14-80 (96)
237 KOG0701 dsRNA-specific nucleas 20.6 36 0.00077 45.7 0.3 57 264-328 343-399 (1606)
238 PF13604 AAA_30: AAA domain; P 20.5 1.1E+02 0.0024 31.5 3.9 37 21-61 91-128 (196)
239 PHA02544 44 clamp loader, smal 20.4 86 0.0019 34.8 3.3 40 22-61 99-138 (316)
240 PRK10536 hypothetical protein; 20.1 1.1E+02 0.0024 33.4 3.7 36 20-60 174-209 (262)
No 1
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.1e-149 Score=1247.39 Aligned_cols=777 Identities=25% Similarity=0.368 Sum_probs=631.6
Q ss_pred ceeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ce
Q 002426 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81 (924)
Q Consensus 3 ~~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~ 81 (924)
|+=||||||+ +.+++|.||||||+|||.|.+||+||||.|+.||+++++|||||||||+.+||+|++.+|. ||
T Consensus 221 ILRsMLYRGS------EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPc 294 (1041)
T KOG0948|consen 221 ILRSMLYRGS------EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPC 294 (1041)
T ss_pred HHHHHHhccc------hHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCc
Confidence 4568999975 5589999999999999999999999999999999999999999999999999999999976 99
Q ss_pred EEecCCCCcccceEEecc--cccccccccccccccchhhh--hhhhhhccccCCCCcCCCCcccccccccCCCCCccccc
Q 002426 82 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLS--LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTS 157 (924)
Q Consensus 82 ~vv~s~~RpvpL~~~~~~--~~~l~~l~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (924)
|||+|++||+||+||+++ ++++|.++|++++|....+. +..+...+..+ +++...++.+++..+++
T Consensus 295 HVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~-~~~~~~~k~~kG~~~~~--------- 364 (1041)
T KOG0948|consen 295 HVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD-GKKKANKKGRKGGTGGK--------- 364 (1041)
T ss_pred eEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc-cccccccccccCCcCCC---------
Confidence 999999999999999765 78999999999998765442 33332222221 11111111111111110
Q ss_pred cccccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCC
Q 002426 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP 237 (924)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~ 237 (924)
.....+++.+++++..+++.|+|||+|||++||.+|.++.+++|++++|++.+..++++++..++
T Consensus 365 ---------------~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls 429 (1041)
T KOG0948|consen 365 ---------------GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS 429 (1041)
T ss_pred ---------------CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence 01234788899999999999999999999999999999999999999999999999999999999
Q ss_pred cccch-----hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccC
Q 002426 238 DAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312 (924)
Q Consensus 238 ~~~~~-----~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pl 312 (924)
++++. .++++|+||||+|||||+|+.|+.||.+|++|++||||||+||++|+||||+||||++++||||..++|+
T Consensus 430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwi 509 (1041)
T KOG0948|consen 430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWI 509 (1041)
T ss_pred hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeee
Confidence 98876 5667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHH
Q 002426 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 392 (924)
Q Consensus 313 s~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~ 392 (924)
+.+||+||+|||||||+|..|+||++.+..+++..+..++.|.++||.|+|+.+|||+||||+
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlR----------------- 572 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLR----------------- 572 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHH
Q 002426 393 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472 (924)
Q Consensus 393 ~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 472 (924)
.++.+| +.++++||+|||+....+..+.++.+++++++.+. +.+ +..+.+|+.|+.++.+..+
T Consensus 573 vEei~p---e~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~-------i~~-------E~~v~~yh~l~~ql~~~~k 635 (1041)
T KOG0948|consen 573 VEEISP---EYMLERSFHQFQNYKALPDIEEKLKQLEEELDSIN-------IPN-------EEEVKEYHDLELQLEKYGK 635 (1041)
T ss_pred HccCCH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhccc-------CCC-------hHHHHHHHHHHHHHHHHHH
Confidence 457776 88999999999999887777777777766666554 222 6689999999999987743
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcchhhhhhc---------------
Q 002426 473 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--------------- 537 (924)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------------- 537 (924)
++++.+ . -|..++||++ .||.+.+ ..+ ..++.||.+.++
T Consensus 636 ---~i~~~~-~------------~P~~~l~fLq------~GRlV~v---~~g-~~d~~WGvvv~f~k~~~~~~~~~~~~p 689 (1041)
T KOG0948|consen 636 ---DIREVI-T------------HPKYCLPFLQ------PGRLVKV---KVG-GDDFFWGVVVNFIKRKNSSKNSDQVGP 689 (1041)
T ss_pred ---HHHHHH-c------------Ccchhccccc------CCceEEE---ecC-CCCCceeEEEEEEeccCCCCCccccCC
Confidence 334432 1 1677888876 3332211 111 112223333221
Q ss_pred --cccchhhhhhhhccCCCCCCCCCCCCCccccccCCCCcee--eeccceeeeEee--cCCCCccccccCCCChHHHhhh
Q 002426 538 --ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYR--IGFPNVALAQGDALPRETMSLL 611 (924)
Q Consensus 538 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~ 611 (924)
.|+++.++.|.....+... .....|+. .+..+.|. ++....+..|+. ..+| ++..|.+.+.++
T Consensus 690 ~e~Y~vdvll~~~~~~~~~~~--~~~~~p~~---~~ek~~~~vvpv~l~~i~~is~~r~~iP------~dl~~~d~r~~~ 758 (1041)
T KOG0948|consen 690 HESYIVDVLLHCSTESSPVGA--KKVNVPPR---PNEKGEMEVVPVLLTLIDAISSIRLYIP------KDLRSVDARLSV 758 (1041)
T ss_pred CcceEEEEEeeeecccccccc--CcCCCCCC---CCCCCceEEEeeeHHHHhhhhHHHhcCc------ccccCcchHHHH
Confidence 4566666666432211100 00011110 11223333 455555666655 2233 233333332221
Q ss_pred hhhhhhHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccC
Q 002426 612 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEG 691 (924)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~ 691 (924)
.+. .+++.. ++++|+|+|||+.+ |.+. ...+....++++.|+.++..||.
T Consensus 759 -------~k~--v~e~~~-----------rfp~gip~LdPv~d------M~I~----~~~~~~~~~k~e~lE~~l~~hp~ 808 (1041)
T KOG0948|consen 759 -------LKA--VQEVKS-----------RFPDGIPLLDPVKD------MNIK----DVEFKKLVKKIESLEARLESHPL 808 (1041)
T ss_pred -------HHH--HHHHHH-----------hcCCCCCCcChhhc------cCcc----chHHHHHHHHHHHHHHhhccCcc
Confidence 111 233333 45889999999985 8887 45667888999999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchH
Q 002426 692 FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 770 (924)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~EL 770 (924)
|..+. +++.++.+.++.+|..++++|+++++..+.. +++|..+|++||++|||++.++ +|.+|||+||||+++|||
T Consensus 809 ~k~~~--~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~dd-vie~KGrvACEIsSgDEL 885 (1041)
T KOG0948|consen 809 HKSSE--LEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDD-VIELKGRVACEISSGDEL 885 (1041)
T ss_pred cCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCC-eEEEcceEEEEecccchH
Confidence 98765 3556668999999999999999999999887 5666669999999999999885 999999999999999999
Q ss_pred HHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---
Q 002426 771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC--- 847 (924)
Q Consensus 771 lltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~--- 847 (924)
++|||||+|+|++|+|+|+||+||||||++ +. .....+.++|+.++.+|++.|++|++|+.+|+++++.+
T Consensus 886 lLTEliFnG~Fndl~~eq~aaLLSCfVf~e---ks----~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv 958 (1041)
T KOG0948|consen 886 LLTELIFNGIFNDLPVEQAAALLSCFVFQE---KS----SEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYV 958 (1041)
T ss_pred HHHHHHHhccccCCCHHHHHHHHhheeehh---cc----cccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHH
Confidence 999999999999999999999999999988 55 23557789999999999999999999999999999975
Q ss_pred --CCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCcccc
Q 002426 848 --LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISE 921 (924)
Q Consensus 848 --~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~ 921 (924)
|+|+||++||+||+|+||.+||++|++|||+|||++|||+||||||.+||++ |.+|.+|+.+|+..|+||+||+
T Consensus 959 ~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFA 1036 (1041)
T KOG0948|consen 959 ESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFA 1036 (1041)
T ss_pred HhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeeh
Confidence 9999999999999999999999999999999999999999999999999987 9999999999999999999986
No 2
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.6e-127 Score=1099.23 Aligned_cols=827 Identities=29% Similarity=0.395 Sum_probs=616.6
Q ss_pred ceeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ce
Q 002426 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81 (924)
Q Consensus 3 ~~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~ 81 (924)
|+=||||||+ +.+++|+|||||||||++|.+||+||||+||+||+++++|+|||||||+.|||+|++.+++ .+
T Consensus 389 ILRsMLYrga------dliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~I 462 (1248)
T KOG0947|consen 389 ILRSMLYRGA------DLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTI 462 (1248)
T ss_pred HHHHHHhccc------chhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCceE
Confidence 4558999974 5588999999999999999999999999999999999999999999999999999999987 57
Q ss_pred EEecCCCCcccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcC---CCCcccccccccCCCCCcccccc
Q 002426 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD---GGSRRRNSRKHADMNSNNIVTSF 158 (924)
Q Consensus 82 ~vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (924)
+|+.|..|||||+||++.+..+++++|++|.++...+.-.+...+ ....++.. .+..++.++++++++...+ ..+
T Consensus 463 yViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~-g~~ 540 (1248)
T KOG0947|consen 463 YVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVEKSDARGGRGSQKRGGKTNYHN-GGS 540 (1248)
T ss_pred EEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccccccccccccccccCCcCCCCC-CCc
Confidence 888999999999999999999999999999988765544444332 11111111 1111111112222111000 000
Q ss_pred ccccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCc
Q 002426 159 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238 (924)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~ 238 (924)
+ .. .....++.+ +...+++..+..++++|+|||||||+.|+.+|+.|.+.++++..|+++++-+++.+...++.
T Consensus 541 -r---~~-~~~~nrr~~-~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~ 614 (1248)
T KOG0947|consen 541 -R---GS-GIGKNRRKQ-PTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKG 614 (1248)
T ss_pred -c---cc-ccccccccc-chHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcCh
Confidence 0 00 111112222 56888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccch-----hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCC
Q 002426 239 AVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313 (924)
Q Consensus 239 ~~~~-----~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls 313 (924)
++++ .+.++|.||||+||||++|.+|+.||.+|++|++||||||+||||||||||++|||.+++|+||+.++.+.
T Consensus 615 ~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~ 694 (1248)
T KOG0947|consen 615 EDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELL 694 (1248)
T ss_pred hhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecC
Confidence 8884 66788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCccEEEEEeCCC-CCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHH
Q 002426 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 392 (924)
Q Consensus 314 ~~ey~Qm~GRAGR~G~D~~G~vill~~~~-~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~ 392 (924)
|+||+||+|||||||+|..|++|+++... .+..++++++.|.+.+|+|||+.+|+|+||||+.+
T Consensus 695 PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve--------------- 759 (1248)
T KOG0947|consen 695 PGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRVE--------------- 759 (1248)
T ss_pred ChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999877 78899999999999999999999999999999832
Q ss_pred HhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHH
Q 002426 393 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472 (924)
Q Consensus 393 ~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 472 (924)
...+++|+++||++|.+.+..++.++.+..+++++..++...+... ..++.+|+...+++.+...
T Consensus 760 -----~lrvEdm~krSf~E~~s~~~~~~~eq~l~~~~eel~sie~s~c~~~----------~~~l~kyl~a~~e~~e~~~ 824 (1248)
T KOG0947|consen 760 -----ALRVEDMMKRSFSEFVSQRLSPEHEQELKELDEELLSIEESDCAID----------LKDLRKYLSAYEEITEYNE 824 (1248)
T ss_pred -----HHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHhhhcccccccc----------hHHHHHHHHHHHHHHHHHH
Confidence 2468999999999999999999999999999988888876654321 3466677777666665433
Q ss_pred HHHH-------HHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcch--hhhhhccccchh
Q 002426 473 FRTE-------LRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS--SKLKNMASINDS 543 (924)
Q Consensus 473 ~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 543 (924)
++.+ .++.++..|+-.+++ ++ ..+.++|++....+.+|+...+.++...+.+..+. +..-.+..+-+.
T Consensus 825 ~l~~~~~~s~~~~~~l~~GR~vv~k~-~~--~~~~lg~vl~~s~~t~~~~~~~~~~~~~p~~~~~~~~~~s~a~~~~p~~ 901 (1248)
T KOG0947|consen 825 KLREEKMKSANILRILKEGRVVVLKN-LK--EENNLGVVLKVSLNTNGRVCVVLVAYLKPLDNKNGSLDPSFALNLIPDS 901 (1248)
T ss_pred HHHHHHhhchhhhhhhhcCcEEEEcC-hh--hhcccceEEEEecCCCcceEEEEEeeccCCcCcCCCcCcccccccCcch
Confidence 3321 112222222222222 11 12334444433334445544444433332221100 000000001111
Q ss_pred hhhhhhccCCCCCCCCCCCCCccccccCCCCceeeeccceeeeEeecCCCCccccccCCCChHHHhhhhhhhhhHHHHhh
Q 002426 544 FALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLA 623 (924)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (924)
+.... ......| +.+.++..+.|+..+..+ +...+|++....+...+...... ....|..++
T Consensus 902 l~af~---------~~~~~~~-~~~~~~~~~~~~~~~v~~----~~~g~~~ie~l~~~~~~~~~~~~----~D~~~aal~ 963 (1248)
T KOG0947|consen 902 LLAFE---------KFFPNVP-RNVPLGSLNPLYLSGVTA----YVKGVPNIEILCGDALRQIIGKV----ADGQKAALN 963 (1248)
T ss_pred hhccc---------cccCCcc-cccceecccccchhccch----hhcCCcchhhhhccccccccccc----cccHHHHHH
Confidence 11100 0000111 122244455555333222 22223433322222222111110 112233322
Q ss_pred hhhccCcccccCcccccccccCCCCccccc----chhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 002426 624 DSEFGGLWCMEGSLETWSWSLNVPVLSSLS----ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIV 699 (924)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~ 699 (924)
....+-.+..++...+ .|..+|+. ++.++ .+..-+-..++..+...|++.|++-
T Consensus 964 ~~~~~~l~l~~~~~~~------~~~~epv~~~k~kd~e~--------------~~~~l~~~n~~~~~~~~~~i~c~~f-- 1021 (1248)
T KOG0947|consen 964 ESTAQVLDLLEGSLET------PTWKEPVNDSKLKDDEV--------------VEMLLERTNLQNLIQGNPCISCPKF-- 1021 (1248)
T ss_pred HHHHHhhhhhhcCccC------cchhhhhhhhhhccHHH--------------HHHHHHHHHHHHHHhcCCccCCccH--
Confidence 2222222222222222 34444443 22222 1222234455788899999999884
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhc
Q 002426 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779 (924)
Q Consensus 700 ~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g 779 (924)
+.|+....+..+++.+++.|+-++......+.++|.++++||+.+||+|.+. +|++|||+||+|++++|||+|||||++
T Consensus 1022 ~~h~s~~~~~~~~~~ei~~L~~~~sd~~L~l~pey~~RlevLk~~g~vD~~~-~V~lkGRvAceI~s~~ELllteli~dn 1100 (1248)
T KOG0947|consen 1022 DQHYSLARREYKIEKEIENLEFELSDQSLLLSPEYHNRLEVLKPLGFVDEMR-TVLLKGRVACEINSGNELLLTELIFDN 1100 (1248)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhCHHHHHHHHHHhhcCcccccc-eeeecceeeeeecCCcchhHHHHHHhh
Confidence 7888899999999999999999999999999999999999999999999874 899999999999999999999999999
Q ss_pred ccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC------CCCchHH
Q 002426 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC------CLDSQFS 853 (924)
Q Consensus 780 ~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~------~~~~~l~ 853 (924)
.|.+|+|+|+||+||+||||.. . ..++..++.++++-+.+.+++++|.++|..|+++++. +++++||
T Consensus 1101 ~l~~l~peeiaallSslV~e~~---~----e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~ 1173 (1248)
T KOG0947|consen 1101 ALVDLSPEEIAALLSSLVCEGK---T----ERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQTPEEEFPCELRFGLV 1173 (1248)
T ss_pred hhhhcCHHHHHHHHHHHHhcCc---c----ccCCCCChhhhhHHHHHHHHHHHHHHHHHhhccccCchhhccccccccHH
Confidence 9999999999999999999982 2 1234567999999999999999999999999997764 4899999
Q ss_pred HHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCccccCCC
Q 002426 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISELAG 924 (924)
Q Consensus 854 ~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~~~~ 924 (924)
++||+||+|.||.+||++|++.||+|||+++||+|+|||+.+|+.+ ||.|.+||.+|+++|+|+|||+.++
T Consensus 1174 evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd~~L~~Km~~as~~ikRdIVFaaSL 1246 (1248)
T KOG0947|consen 1174 EVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGDPVLHEKMEAASALIKRDIVFAASL 1246 (1248)
T ss_pred HHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCcHHHHHHHHHHHHHhccCccchhhc
Confidence 9999999999999999999999999999999999999999999987 9999999999999999999998764
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-105 Score=952.73 Aligned_cols=793 Identities=29% Similarity=0.393 Sum_probs=576.0
Q ss_pred ceeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ce
Q 002426 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81 (924)
Q Consensus 3 ~~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~ 81 (924)
|+=||||+| ++++.++.||||||+|||+|.+||+|||++|++||+++|+|+||||+||+++|+.||+.++. +|
T Consensus 215 ILRnMlyrg------~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~ 288 (1041)
T COG4581 215 ILRNMLYRG------SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPI 288 (1041)
T ss_pred HHHHHhccC------cccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCe
Confidence 556999996 67799999999999999999999999999999999999999999999999999999998865 89
Q ss_pred EEecCCCCcccceEEecccccccccccccccccch---hhhhhhhhhccccCCCCc-CCCCcccccccccCCCCCccccc
Q 002426 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR---KLSLNYLQLSTSEVKPYK-DGGSRRRNSRKHADMNSNNIVTS 157 (924)
Q Consensus 82 ~vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~---~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (924)
++|++++|||||+||++...++|+++|+++.+... .. ...+.... ... .. ...+..+..+++++. ..+
T Consensus 289 ~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a-~~~l~~~~-~~~-~~~~~~~~~~~a~~~~~~--~~~--- 360 (1041)
T COG4581 289 HVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSA-NRSLSCFS-EKV-RETDDGDVGRYARRTKAL--RGS--- 360 (1041)
T ss_pred EEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhh-hhhhhccc-hhc-cccCcccccccccccccc--CCc---
Confidence 99999999999999999999999999998763321 11 11111000 000 00 000000000000000 000
Q ss_pred cccccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHH-HHHHHHHHHhhC
Q 002426 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE-VELALKRFRILY 236 (924)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~-i~~~l~~~~~~~ 236 (924)
. .......++++.+...++.|+|+|+||+++|+.++..+..+++....+++. ++.++++....+
T Consensus 361 ----~-----------~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 361 ----A-----------KGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred ----c-----------cccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 0 001112456788888899999999999999999999999888877777777 999999888777
Q ss_pred Ccccc------hhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcc
Q 002426 237 PDAVR------EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310 (924)
Q Consensus 237 ~~~~~------~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~ 310 (924)
+.+++ ..+.++|.+|||+||+||+|.+|+.||++|+.|++||||||+|+|+|+||||+|||+.+++||||+.++
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r 505 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHR 505 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCcee
Confidence 76655 356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCC-HHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhH
Q 002426 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG-AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 389 (924)
Q Consensus 311 pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~-~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~ 389 (924)
+++++||+||+|||||+|+|..|++|+++.+.+. +.++..+..+.++||.|+|+++|+|++|+++
T Consensus 506 ~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnll~-------------- 571 (1041)
T COG4581 506 WLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLR-------------- 571 (1041)
T ss_pred ecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHhhhh--------------
Confidence 9999999999999999999999999999877766 9999999999999999999999999999998
Q ss_pred HHHHhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHH
Q 002426 390 KALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 469 (924)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~ 469 (924)
.++ +..++.++++||++||+....+.....|.++++++..+...+.....+. . +.-...|.+++.++.+
T Consensus 572 ---v~~--l~~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~~~d~~~-~-----~~~~~~~~k~~~~l~~ 640 (1041)
T COG4581 572 ---VEG--LQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTDEND-A-----PKLSLDYEKLRKKLNE 640 (1041)
T ss_pred ---hcc--cCcHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccccc-h-----HHHHHHHHHHHHHHHH
Confidence 223 3347889999999999999999999999999999888887654321110 0 0014566667777765
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcchhhhhhcc-ccchhhhhhh
Q 002426 470 EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA-SINDSFALNR 548 (924)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 548 (924)
..+......+..+..|...+...+..+..|.+ +.+.. .+. .+..... +....+.
T Consensus 641 ~~~~~a~~~r~~~~gr~~~~~~~~~~~~~g~~-------------------~~~~~--r~~-~~~t~~~~~~~~~~~--- 695 (1041)
T COG4581 641 EMRLQAAGLRALRKGRVVQIKDGLAALFWGRL-------------------LKLTK--RYT-TKLTDHELYLAVLVE--- 695 (1041)
T ss_pred HHHHHHhHHHHhhhcceeeeecchhhhhheee-------------------eeecc--ccc-cccccchheehheec---
Confidence 54433322222212222111111111111111 00000 000 0000000 0000000
Q ss_pred hccCCCCCCCCCCCCCccccccC----CCCceeeeccceeeeEeecCCCCccccccCCCChHHHhhhhhhhhhHHHHhhh
Q 002426 549 LAQSNGDDYDTQDVKPSYYVALG----SDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLAD 624 (924)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (924)
. ......|.++++.. .++.|+......+..+.-. .+.......+.+|++....- +...+-+. .
T Consensus 696 ---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~P~~~~~~~--~~~~~~~~--~ 762 (1041)
T COG4581 696 ---P-----NADFSFPRPLVKAMPHMNRESRWLVKILFRISFVYLL-NATEILELILTMPRRLLSRQ--GKLRRGEP--S 762 (1041)
T ss_pred ---c-----cCCccchhHHhhcccccccccccccccceeeeeeeec-cccccchhhhcCCHhHhhcc--cchhccch--h
Confidence 0 00011122222111 3344543333333333321 11111122356665543321 00000000 0
Q ss_pred hhccCcccccCcccccccccC-CCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCCch-----hhHH
Q 002426 625 SEFGGLWCMEGSLETWSWSLN-VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKE-----YKKI 698 (924)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~-----~~~~ 698 (924)
+. ......++ .+.+.++.. |+ .+..++..+..++..|+.+.. ..+.
T Consensus 763 ~~-----------~~~~~~~~~~~~le~v~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1041)
T COG4581 763 NE-----------AIAAGLDGNEKILENVVE------MK-----------IQVPELTVSLLKLRFGRYHLSENPLMNFDG 814 (1041)
T ss_pred HH-----------HHHhccccchhhhhhccc------cc-----------ccchhHHHHHHHHhhcccccCCCccccchH
Confidence 00 00011112 223433321 22 234455666666776665552 1234
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHh
Q 002426 699 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778 (924)
Q Consensus 699 ~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~ 778 (924)
.+++++...+...|..+++.+...| ...++.+++..+.++|+.+||++.+. +|+.|||+||+|++++||||||||++
T Consensus 815 ~~~~~~~~~~~~~L~~~i~~l~~~~--~~~~~l~~~~~l~~~l~~~g~~~~~~-~v~~kGr~a~eI~s~~ellL~e~i~~ 891 (1041)
T COG4581 815 AERLIENELLLSDLQAEIEDLSSSI--EALSFLDDYKTLQEVLKKLGFIEDNA-VVLIKGRVAAEISSEDELLLTELIFS 891 (1041)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhcCCCccc-ccccccceeeeecCCCchHHHHHHHc
Confidence 5778888899999999999999998 55678899999999999999999874 89999999999999999999999999
Q ss_pred cccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCchHHHH
Q 002426 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC---LDSQFSGM 855 (924)
Q Consensus 779 g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~---~~~~l~~~ 855 (924)
|.|++|+|+++||++||||||. ++++.....+.+++.++.++..+.+++++|.+++..|+++++.+ +.++||++
T Consensus 892 g~f~~l~p~e~aallSa~v~e~---~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~i~~~~~l~~~~~~lm~v 968 (1041)
T COG4581 892 GEFNDLEPEELAALLSAFVFEE---KTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPELNDFSVGLMEV 968 (1041)
T ss_pred CCccCCCHHHHHHHHHheeecc---CCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcCCcCCcccccccccHHHH
Confidence 9999999999999999999998 44322123455789999999999999999999999999999876 88899999
Q ss_pred HHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCcccc
Q 002426 856 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISE 921 (924)
Q Consensus 856 v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~ 921 (924)
||+||+|.+|.+||.+|+++|||+||++||++|+|+|+.+++.. +++|.++|..|+..|+||+|+-
T Consensus 969 v~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~~L~~k~~~~~~~irr~iv~~ 1036 (1041)
T COG4581 969 VYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIVFV 1036 (1041)
T ss_pred HHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCHHHHHHHHHHHHhhhcCeEec
Confidence 99999999999999999999999999999999999999999987 7999999999999999999974
No 4
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=2.3e-42 Score=351.51 Aligned_cols=170 Identities=30% Similarity=0.453 Sum_probs=135.0
Q ss_pred ccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHH
Q 002426 747 LDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826 (924)
Q Consensus 747 ld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l 826 (924)
||+++ +||+|||+||+|+++||||+|||||+|+|++|+|+||||++||||||+ |..+. ...+.|+..+.++++++
T Consensus 1 id~~~-~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~---~~~~~-~~~~~~~~~l~~~~~~l 75 (180)
T PF08148_consen 1 IDEDN-VVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEP---RREDE-EERYPPSPRLREALEQL 75 (180)
T ss_dssp B-TTS--BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC--------SS----------HHHHHHHHH
T ss_pred CCCCC-ccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhccc---ccCcc-cccccccHHHHHHHHHH
Confidence 56664 899999999999999999999999999999999999999999999998 44322 12333445999999999
Q ss_pred HHHHHHHHHHHHHcCC----CCCCCCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCC--CC
Q 002426 827 DEHRSSFLELQEKHGV----EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD--VD 900 (924)
Q Consensus 827 ~~~~~~l~~~~~~~~l----~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~--~~ 900 (924)
.+++++|.++|.+||+ ..+. ++|+||++||+||+|+||++||++|+++||||||++||++|||+||++++. .|
T Consensus 76 ~~~~~~l~~~~~~~~l~~~~~~~~-~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~ 154 (180)
T PF08148_consen 76 QEIAERLAKVEREHGLDEEEYVER-FDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGD 154 (180)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHC-STTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred HHHHHHHHHHHHHhCCCCcccccC-CCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 4444 599999999999999999999999999999999999999999999999943 49
Q ss_pred hHHHHHHHHHHhccCCCccccC
Q 002426 901 QRLQKNAVDASNVMDRPPISEL 922 (924)
Q Consensus 901 ~~L~~~a~~A~~~i~R~~v~~~ 922 (924)
|+|+++|++|+++|+||||+.-
T Consensus 155 ~~L~~~~~~a~~~i~R~iV~~~ 176 (180)
T PF08148_consen 155 PELAEKAREAIDLIRRDIVFAS 176 (180)
T ss_dssp HHHHHHHHHHHHHHSHCCCC--
T ss_pred HHHHHHHHHHHHhccCCccccc
Confidence 9999999999999999999864
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-39 Score=400.70 Aligned_cols=320 Identities=26% Similarity=0.380 Sum_probs=240.4
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
..+++++++||+||+|+|+|.+||+.+|.++.++ ++++|+|+||||++|++++++|++ ...+.+++||+|+.
T Consensus 132 ~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~-----~~~~~~~~rpv~l~ 206 (737)
T PRK02362 132 APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLD-----AELVDSEWRPIDLR 206 (737)
T ss_pred hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhC-----CCcccCCCCCCCCe
Confidence 4678999999999999999999999999987765 578999999999999999999997 34578899999998
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
.++.....+.. .+. . .. +.. .
T Consensus 207 ~~v~~~~~~~~-~~~--------~--~~----------------------------------------~~~--------~ 227 (737)
T PRK02362 207 EGVFYGGAIHF-DDS--------Q--RE----------------------------------------VEV--------P 227 (737)
T ss_pred eeEecCCeecc-ccc--------c--cc----------------------------------------CCC--------c
Confidence 76532211000 000 0 00 000 0
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC--CCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~--~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
........+..... ...++||||+||+.|+.+|..|... ......+...+....+.+....+......+..++..||
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 228 SKDDTLNLVLDTLE-EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred cchHHHHHHHHHHH-cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 00012222222222 3469999999999999999988732 12344455555555555544333333446778899999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCC-CcccCCHHHHHHHhcccCCCCCCC
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~-~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
|+|||||++.+|..||.+|++|.++|||||+|+++|||+|+++|||.++.+||+. +..|+++.+|+||+|||||+|.|.
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999975 357999999999999999999999
Q ss_pred ccEEEEEeCCCCCHHHHH-HHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHH
Q 002426 332 RGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410 (924)
Q Consensus 332 ~G~vill~~~~~~~~~~~-~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~ 410 (924)
.|.+|+++.+.++..+++ +++.+.+.|++|+|...+.+.-++++.... ....+.+++.+|++.+|.
T Consensus 387 ~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~-------------~~~~~~~d~~~~l~~Tf~ 453 (737)
T PRK02362 387 YGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIAS-------------GFARTRDGLLEFLEATFY 453 (737)
T ss_pred CceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHh-------------CccCCHHHHHHHHHhChH
Confidence 999999997755455554 456689999999998766665555542111 123556788899999998
Q ss_pred hhhcc
Q 002426 411 NYVGS 415 (924)
Q Consensus 411 ~~~~~ 415 (924)
.++..
T Consensus 454 ~~~~~ 458 (737)
T PRK02362 454 ATQTD 458 (737)
T ss_pred Hhhcc
Confidence 87653
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4e-39 Score=388.61 Aligned_cols=321 Identities=29% Similarity=0.418 Sum_probs=229.4
Q ss_pred CCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCC---CccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccc
Q 002426 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93 (924)
Q Consensus 17 ~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~---~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL 93 (924)
.+.++.+|++||+||+|+++|+.||+++|.++..++. .+|+|+||||+||++++|+||+ +..+.+++||+|+
T Consensus 140 ~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~-----a~~~~~~~rp~~l 214 (766)
T COG1204 140 RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLN-----AKLVESDWRPVPL 214 (766)
T ss_pred CcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhC-----CcccccCCCCccc
Confidence 3558899999999999999999999999999987643 4899999999999999999998 4455788999887
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
.........++. ..++.+ . .+ ..
T Consensus 215 ~~~v~~~~~~~~-----------------------------~~~~~k--~------~~-----------~~--------- 237 (766)
T COG1204 215 RRGVPYVGAFLG-----------------------------ADGKKK--T------WP-----------LL--------- 237 (766)
T ss_pred ccCCccceEEEE-----------------------------ecCccc--c------cc-----------cc---------
Confidence 643221110000 000000 0 00 00
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhh--CCCCCHHhHHHHHHHHHHHHh-hCCcccchhHHhhhcc
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED--CNLLDECEMSEVELALKRFRI-LYPDAVREPAIKGLLK 250 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~--~~l~~~~e~~~i~~~l~~~~~-~~~~~~~~~~~~~L~~ 250 (924)
........+.... ....++||||+||+.+...|..+.. .+..++.+........+.+.. ..+......+.+++.+
T Consensus 238 -~~~~~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 238 -IDNLALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred -chHHHHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 0011222222222 3446999999999999999999873 334444444433333333332 2333334577889999
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecC-CCCcccCCHHHHHHHhcccCCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT-ASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~d-g~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
|||+||+||++.+|..||..|++|+||||+||+|||+|||+||++|||.++.+|+ ..+..++++.||+||.|||||+|+
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999 445789999999999999999999
Q ss_pred CCccEEEEEeCCCCCHHHH-HHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhh
Q 002426 330 DNRGHVVLVQTPYEGAEEC-CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 408 (924)
Q Consensus 330 D~~G~vill~~~~~~~~~~-~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 408 (924)
|..|.++++++...+...+ ..+..+.++|+.|++....+.-..++ .+.+..+ ..+..+..++..++
T Consensus 396 d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~------~v~~~~~-------~v~~~~~~~f~~~t 462 (766)
T COG1204 396 DDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLL------GVISVGD-------AVSWLELTDFYERT 462 (766)
T ss_pred CCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEE------EEEeccc-------hhhHHHHHHHHHHH
Confidence 9999999998555544444 44677778888887765442211111 1222222 23445667788888
Q ss_pred HHhhhc
Q 002426 409 FGNYVG 414 (924)
Q Consensus 409 f~~~~~ 414 (924)
|.+.|.
T Consensus 463 ~~~~~~ 468 (766)
T COG1204 463 FYNPQT 468 (766)
T ss_pred Hhhhhh
Confidence 887764
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-36 Score=373.33 Aligned_cols=310 Identities=30% Similarity=0.402 Sum_probs=227.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
..++++|++||+||+|.++|..||+.+|.++.+++..+|+|+||||++|++++++|++. ..+.+++||+|+...+
T Consensus 133 ~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~-----~~~~~~~rpv~l~~~~ 207 (720)
T PRK00254 133 SSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNA-----ELVVSDWRPVKLRKGV 207 (720)
T ss_pred chhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCC-----ccccCCCCCCcceeeE
Confidence 46789999999999999999999999999999999999999999999999999999973 4577889999997543
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
......+ ... +. . .+ ...
T Consensus 208 ~~~~~~~--~~~-~~-----~---------------------------------------------~~---------~~~ 225 (720)
T PRK00254 208 FYQGFLF--WED-GK-----I---------------------------------------------ER---------FPN 225 (720)
T ss_pred ecCCeee--ccC-cc-----h---------------------------------------------hc---------chH
Confidence 2111000 000 00 0 00 000
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC--CCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~--~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
.....+..+.. ...++||||+||+.|+.+|..+... .+....+...+....+.+... + ....+..++..||++|
T Consensus 226 ~~~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 226 SWESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEEN-P--TNEKLKKALRGGVAFH 301 (720)
T ss_pred HHHHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC-C--CcHHHHHHHhhCEEEe
Confidence 11112222222 2468999999999999988877531 233333334444443333211 1 1235667788999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
||||++.+|..||.+|++|.++|||||+|+++|||+|+++|||.++.+|++.+..+++..+|+||+|||||+|.|..|.+
T Consensus 302 Hagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ 381 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEA 381 (720)
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceE
Confidence 99999999999999999999999999999999999999999999999987545567889999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHhCCCcccccccCCchhH---HHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhh
Q 002426 336 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM---VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 412 (924)
Q Consensus 336 ill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~---~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~ 412 (924)
++++.+.+..+.+.+++.+.++++.|.+.....+ +++.+.. ....+.+++..++..+|..+
T Consensus 382 ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~----------------~~~~~~~~~~~~l~~Tf~~~ 445 (720)
T PRK00254 382 IIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITN----------------FGVSNFKELVNFLERTFYAH 445 (720)
T ss_pred EEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHhCHHHH
Confidence 9998764323345567888888888888654322 3333221 12356778889999999765
Q ss_pred hc
Q 002426 413 VG 414 (924)
Q Consensus 413 ~~ 414 (924)
+.
T Consensus 446 ~~ 447 (720)
T PRK00254 446 QR 447 (720)
T ss_pred hh
Confidence 43
No 8
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-36 Score=370.15 Aligned_cols=305 Identities=29% Similarity=0.392 Sum_probs=229.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHh---CCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY---CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~---lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
+.+++++++||+||+|+++|.+||+.+|.++.. ++++.|+|+||||++|++++++|++ +..+.+.+||+|+.
T Consensus 130 ~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-----~~~~~~~~r~vpl~ 204 (674)
T PRK01172 130 PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-----ASLIKSNFRPVPLK 204 (674)
T ss_pred hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-----CCccCCCCCCCCeE
Confidence 456899999999999999999999999998764 4578999999999999999999997 34577889999998
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
..+......+ .+.. . +
T Consensus 205 ~~i~~~~~~~--~~~~---------------------------~--------------------------~--------- 220 (674)
T PRK01172 205 LGILYRKRLI--LDGY---------------------------E--------------------------R--------- 220 (674)
T ss_pred EEEEecCeee--eccc---------------------------c--------------------------c---------
Confidence 6543211100 0000 0 0
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
....+...+..... +..++||||+|++.|+.++..|....- ... . +. +...........+.+++.+||++
T Consensus 221 ~~~~~~~~i~~~~~-~~~~vLVF~~sr~~~~~~a~~L~~~~~-~~~---~----~~-~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 221 SQVDINSLIKETVN-DGGQVLVFVSSRKNAEDYAEMLIQHFP-EFN---D----FK-VSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred ccccHHHHHHHHHh-CCCcEEEEeccHHHHHHHHHHHHHhhh-hcc---c----cc-ccccccccccHHHHHHHhcCEEE
Confidence 00012223333322 346999999999999999998863210 000 0 00 00000111122455678899999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
|||||++.+|..||+.|++|.++|||||+|+++|||+|+++|||.++.+|++.+..|+++.+|.||+|||||.|.|..|.
T Consensus 291 ~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhhhc
Q 002426 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 414 (924)
Q Consensus 335 vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~~~ 414 (924)
+++++.+.++.+.+.+++.+.+.|++|++.....+..|+++.... ....+.+++.+|+..+|..++.
T Consensus 371 ~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~-------------g~~~~~~d~~~~l~~tf~~~~~ 437 (674)
T PRK01172 371 GYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISM-------------GLASSMEDLILFYNETLMAIQN 437 (674)
T ss_pred EEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHh-------------cccCCHHHHHHHHHhhhhHhcC
Confidence 998887665566677788899999999998766666776652211 1134567788888889886654
No 9
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=354.97 Aligned_cols=296 Identities=25% Similarity=0.340 Sum_probs=224.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC-------CCCccEEEEcccCCCHHHHHHHhcccCC-ceEEecCCCC
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRR 89 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-------p~~~qiV~LSATi~N~~e~a~wL~~~~~-~~~vv~s~~R 89 (924)
...++.|++||+||||+|.| +||+++|.++.+. ...+|||+||||+||.+++|.||+..+. ....|...||
T Consensus 233 ~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 233 SALFSLVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred hhhhhheeeEEeeeehhhcC-cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 56788999999999999998 8999999998764 3579999999999999999999997633 4778889999
Q ss_pred cccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhh
Q 002426 90 PVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169 (924)
Q Consensus 90 pvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (924)
||||.+.+.+.... +... .+....
T Consensus 312 PvpL~~~~iG~k~~-----------~~~~---------------------------------------------~~~~~d 335 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGK-----------KNRQ---------------------------------------------QKKNID 335 (1230)
T ss_pred ccceeeeEEeeecc-----------cchh---------------------------------------------hhhhHH
Confidence 99999887643210 0000 000000
Q ss_pred hhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhc
Q 002426 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249 (924)
Q Consensus 170 ~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~ 249 (924)
.. -..+++..+ ....+++|||.||..+-..|+.|......... .....+....+.+.++..
T Consensus 336 ~~------~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~-----------~~~f~~~~~~k~l~elf~ 396 (1230)
T KOG0952|consen 336 EV------CYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGE-----------KDLFLPSPRNKQLKELFQ 396 (1230)
T ss_pred HH------HHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCc-----------ccccCCChhhHHHHHHHH
Confidence 00 011122222 23469999999999999999988632110000 000001111113456778
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC--cccCCHHHHHHHhcccCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQMAGRAGRR 327 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~--~~pls~~ey~Qm~GRAGR~ 327 (924)
+|+|+|||||+..+|..+|..|+.|.++||+||.|+|+|+|+||-.|||-++.-||... +.+++..+.+|+.|||||+
T Consensus 397 ~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRP 476 (1230)
T KOG0952|consen 397 QGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRP 476 (1230)
T ss_pred hhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999998754 7889999999999999999
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHH
Q 002426 328 GIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393 (924)
Q Consensus 328 G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~ 393 (924)
++|+.|.++++.+. +.-+.+.-+.....|+||+|.+..-..|| +...+.|+.|..+||.|++
T Consensus 477 qFd~~G~giIiTt~--dkl~~Y~sLl~~~~piES~~~~~L~dnLn--AEi~LgTVt~VdeAVeWL~ 538 (1230)
T KOG0952|consen 477 QFDSSGEGIIITTR--DKLDHYESLLTGQNPIESQLLPCLIDNLN--AEISLGTVTNVDEAVEWLK 538 (1230)
T ss_pred CCCCCceEEEEecc--cHHHHHHHHHcCCChhHHHHHHHHHHhhh--hheeeceeecHHHHHHHhh
Confidence 99999999999876 33455666666678999999887655555 3445569999999999864
No 10
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=347.12 Aligned_cols=375 Identities=25% Similarity=0.312 Sum_probs=259.7
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhC-------CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcc
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 91 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-------p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rpv 91 (924)
+..+-++++|+||+|++.| +||++.|.+..+. ...+++++||||+||.++++.+|.......+.+.++|||+
T Consensus 433 aY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpv 511 (1674)
T KOG0951|consen 433 AYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPV 511 (1674)
T ss_pred hHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcC
Confidence 5566899999999999988 8999999997654 3479999999999999999999998776678888999999
Q ss_pred cceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhh
Q 002426 92 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171 (924)
Q Consensus 92 pL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (924)
||.+.|.+...-.++.+ .++ |
T Consensus 512 PL~qq~Igi~ek~~~~~-------~qa--------------------------------------------m-------- 532 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKR-------FQA--------------------------------------------M-------- 532 (1674)
T ss_pred CccceEeccccCCchHH-------HHH--------------------------------------------H--------
Confidence 99988764321000000 000 0
Q ss_pred hccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHH------hhCCcccch-hH
Q 002426 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR------ILYPDAVRE-PA 244 (924)
Q Consensus 172 ~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~------~~~~~~~~~-~~ 244 (924)
....++ +-+...+..|+|||+.||+++-..|+.+.+.-+ |.+-+..++.+-. ....+...+ .+
T Consensus 533 ----Ne~~ye--KVm~~agk~qVLVFVHsRkET~ktA~aIRd~~l----e~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 533 ----NEACYE--KVLEHAGKNQVLVFVHSRKETAKTARAIRDKAL----EEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred ----HHHHHH--HHHHhCCCCcEEEEEEechHHHHHHHHHHHHHh----hhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 001111 112234557999999999999999998874322 2222222222111 001111222 46
Q ss_pred HhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCc--ccCCHHHHHHHhc
Q 002426 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR--IQLTSNELFQMAG 322 (924)
Q Consensus 245 ~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~--~pls~~ey~Qm~G 322 (924)
.++|.+|+|+||+||...+|..+|.+|+.|.++|+++|-|+|||||+||.||+|.++.-||.+.. .+++|.+..||.|
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999987654 4689999999999
Q ss_pred ccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHH---------
Q 002426 323 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ--------- 393 (924)
Q Consensus 323 RAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~--------- 393 (924)
||||.+.|..|..+++.+..+ . .++--+..+..|++|+|.+.....||. +.+.-+.+-+++++|+.
T Consensus 683 ragrp~~D~~gegiiit~~se-~-qyyls~mn~qLpiesq~~~rl~d~lna---eiv~Gv~~~~d~~~wl~yTylyvRm~ 757 (1674)
T KOG0951|consen 683 RAGRPQYDTCGEGIIITDHSE-L-QYYLSLMNQQLPIESQFVSRLADCLNA---EIVLGVRSARDAVDWLGYTYLYVRMV 757 (1674)
T ss_pred hcCCCccCcCCceeeccCchH-h-hhhHHhhhhcCCChHHHHHHhhhhhhh---hhhcchhhHHHHHhhhcceeeEEeec
Confidence 999999999999998886644 3 355556667789999999987776764 22323566777887762
Q ss_pred -----hCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHH--------HHHHHhhh-----chhhhhhHHhhhccHH
Q 002426 394 -----AGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE--------TDVLTSEI-----SDDAIDRKSRRLLSEA 455 (924)
Q Consensus 394 -----~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~--------~~~l~~~~-----~~~~~~~~~~~~~~~~ 455 (924)
++.+++....+++.-.+...+.......+..+..++.+ +..+.+.. +..+++..+...+.+.
T Consensus 758 ~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i 837 (1674)
T KOG0951|consen 758 RNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEI 837 (1674)
T ss_pred cCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccc
Confidence 34444444444554444444443333333333333332 22222211 1245555666667777
Q ss_pred HHHHHHHHHHHHH
Q 002426 456 AYKEMANLQEELK 468 (924)
Q Consensus 456 ~~~e~~~l~~~~~ 468 (924)
++..|+.+.++.+
T Consensus 838 ~lfrifs~seEfk 850 (1674)
T KOG0951|consen 838 DLFRIFSKSEEFK 850 (1674)
T ss_pred hhhhhhhhccccc
Confidence 7888888777665
No 11
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=325.86 Aligned_cols=289 Identities=28% Similarity=0.401 Sum_probs=206.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHh-----CCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-----CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~-----lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rpvp 92 (924)
...++.++.||+||.|+++|.+||..+|+++.. ....+|+|+||||++|...++.|+. ..+..+.+||||
T Consensus 336 ~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-----A~~y~t~fRPv~ 410 (1008)
T KOG0950|consen 336 QGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-----AFVYTTRFRPVP 410 (1008)
T ss_pred cCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh-----hhheecccCccc
Confidence 566889999999999999999999999998753 2345789999999999999999997 578889999999
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
|..|...+..+|..- . .. .-..+..-+... . +.. +++
T Consensus 411 L~E~ik~G~~i~~~~-r-~~-~lr~ia~l~~~~-------------------~-g~~--------------dpD------ 447 (1008)
T KOG0950|consen 411 LKEYIKPGSLIYESS-R-NK-VLREIANLYSSN-------------------L-GDE--------------DPD------ 447 (1008)
T ss_pred chhccCCCcccccch-h-hH-HHHHhhhhhhhh-------------------c-ccC--------------CCc------
Confidence 999986665444321 0 00 000000000000 0 000 000
Q ss_pred ccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC-C--CCCHHhHH--HHHHHHHHHHhhCCcccchhHHhh
Q 002426 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-N--LLDECEMS--EVELALKRFRILYPDAVREPAIKG 247 (924)
Q Consensus 173 ~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~-~--l~~~~e~~--~i~~~l~~~~~~~~~~~~~~~~~~ 247 (924)
.++.+..... .+...+||||+||++|+.+|..+... . ........ .+.. ........|..++..+...
T Consensus 448 -----~~v~L~tet~-~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s-~s~~lr~~~~~ld~Vl~~t 520 (1008)
T KOG0950|consen 448 -----HLVGLCTETA-PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLS-ISNLLRRIPGILDPVLAKT 520 (1008)
T ss_pred -----ceeeehhhhh-hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHH-HHhHhhcCCcccchHHhee
Confidence 1111122221 23357999999999999998665411 0 00000000 0000 1112223444455566678
Q ss_pred hccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCC
Q 002426 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327 (924)
Q Consensus 248 L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~ 327 (924)
+..||+|||+|++..+|+.||..|++|.+.|++||+|+|+|+|+||+.|+|.... + +...++..+|.||+|||||.
T Consensus 521 i~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~-~---g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 521 IPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY-V---GREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred ccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc-c---ccchhhhhhHHhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999998532 1 44678999999999999999
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCc
Q 002426 328 GIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366 (924)
Q Consensus 328 G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~ 366 (924)
|+|+.|.+|+++.+.+. ....+++..+.+|+.|.+...
T Consensus 597 gidT~GdsiLI~k~~e~-~~~~~lv~~~~~~~~S~l~~e 634 (1008)
T KOG0950|consen 597 GIDTLGDSILIIKSSEK-KRVRELVNSPLKPLNSCLSNE 634 (1008)
T ss_pred ccccCcceEEEeeccch-hHHHHHHhccccccccccccc
Confidence 99999999999988764 456699999999999988554
No 12
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8e-33 Score=305.85 Aligned_cols=234 Identities=31% Similarity=0.417 Sum_probs=188.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
...+.+|+.||+||+|.|.|.+||+-+.-+|.+| -+..|+|.||||+.|++++|..|+ ..+|.-+.|||||+
T Consensus 333 g~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-----a~lV~y~~RPVplE 407 (830)
T COG1202 333 GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-----AKLVLYDERPVPLE 407 (830)
T ss_pred CCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-----CeeEeecCCCCChh
Confidence 4789999999999999999999999999888764 458999999999999999999998 67888899999999
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
.|+....+ ... ...+
T Consensus 408 rHlvf~~~--------e~e-K~~i-------------------------------------------------------- 422 (830)
T COG1202 408 RHLVFARN--------ESE-KWDI-------------------------------------------------------- 422 (830)
T ss_pred HeeeeecC--------chH-HHHH--------------------------------------------------------
Confidence 87642210 000 0000
Q ss_pred CchhHHHHHHH-----HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhc
Q 002426 175 QVPQVIDTLWH-----LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249 (924)
Q Consensus 175 ~~~~~~~~l~~-----l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~ 249 (924)
+..+++. -...-.+++|||++||+.|..+|..|...++
T Consensus 423 ----i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~--------------------------------- 465 (830)
T COG1202 423 ----IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGL--------------------------------- 465 (830)
T ss_pred ----HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCc---------------------------------
Confidence 0000000 0011235899999999999999999987665
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
..+++||||+..+|..||..|.++.+.++|+|-.|+.|||+||..|||.++- .+..|+++.||.||+|||||+++
T Consensus 466 -~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa----MG~~WLs~~EF~QM~GRAGRp~y 540 (830)
T COG1202 466 -KAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA----MGIEWLSVREFQQMLGRAGRPDY 540 (830)
T ss_pred -ccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH----cccccCCHHHHHHHhcccCCCCc
Confidence 4567999999999999999999999999999999999999999999999764 26689999999999999999999
Q ss_pred CCccEEEEEeCCCCC---------HHHHHHHHhCCCccccccc
Q 002426 330 DNRGHVVLVQTPYEG---------AEECCKLLFAGVEPLVSQF 363 (924)
Q Consensus 330 D~~G~vill~~~~~~---------~~~~~~l~~~~~~pL~S~~ 363 (924)
+..|.|+++..|... -+.+.+++.+.++|+.-.+
T Consensus 541 HdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey 583 (830)
T COG1202 541 HDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEY 583 (830)
T ss_pred ccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceecc
Confidence 999999999877532 2345678888888866443
No 13
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=8.1e-29 Score=287.07 Aligned_cols=341 Identities=27% Similarity=0.415 Sum_probs=206.1
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc----CCceEEecCCCCcccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI----HGKTELITSSRRPVPL 93 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~----~~~~~vv~s~~RpvpL 93 (924)
..+..++++||+||||+++..+-|..||+++.+.| +.+++||||++|+..|..|++.. ..+++.+.-..|-.-+
T Consensus 627 q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel 704 (1330)
T KOG0949|consen 627 QKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSEL 704 (1330)
T ss_pred hhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhh
Confidence 57889999999999999999999999999987776 56999999999999999999832 2256666444333322
Q ss_pred eEEecccc---cccccc-------------------ccccc-cc--c--hhhhhhhhhhc--cccCCCCcCCCC---cc-
Q 002426 94 TWYFSTKT---ALLPLL-------------------DEKGK-HM--N--RKLSLNYLQLS--TSEVKPYKDGGS---RR- 140 (924)
Q Consensus 94 ~~~~~~~~---~l~~l~-------------------d~~~~-~~--~--~~l~~~~~~~~--~~~~~~~~~~~~---~~- 140 (924)
.-++.... +.+++. ..... .. . ..+...++..- ......|..... ..
T Consensus 705 ~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~ 784 (1330)
T KOG0949|consen 705 GLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEV 784 (1330)
T ss_pred cceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechH
Confidence 22221110 000000 00000 00 0 01111111100 000000100000 00
Q ss_pred ----cccc--cccCCCCCcccc------ccccccCchhhhhhhh----ccCchhHHHHHHHHHhCCCCCeEEEEcChHhH
Q 002426 141 ----RNSR--KHADMNSNNIVT------SFGQHQLSKNSINAIR----RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204 (924)
Q Consensus 141 ----~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~c 204 (924)
+... ..+- ....... ...+....+....... .....++++++..|.++++.|+|+|.--|..|
T Consensus 785 ~e~~r~~~~l~~~f-~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fc 863 (1330)
T KOG0949|consen 785 GEYGRHLLELFQGF-IEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFC 863 (1330)
T ss_pred HHHHHHHHHHHHHh-hhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHH
Confidence 0000 0000 0000000 0000000000000000 00123478888889999999999999999999
Q ss_pred HHHHHHhhh----CCCCCHHhHHHHH--------------HHHHHHHh------------h----------CC-----c-
Q 002426 205 DAAVQYLED----CNLLDECEMSEVE--------------LALKRFRI------------L----------YP-----D- 238 (924)
Q Consensus 205 e~~a~~L~~----~~l~~~~e~~~i~--------------~~l~~~~~------------~----------~~-----~- 238 (924)
+.+|..+.+ ... ++.+.+.. +.-+++.. . .| +
T Consensus 864 ekla~kv~~~Le~~e~--Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~ 941 (1330)
T KOG0949|consen 864 EKLALKVHRQLESMEM--EEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDY 941 (1330)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchh
Confidence 997765431 100 01111100 00000000 0 00 0
Q ss_pred ----------ccchhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC
Q 002426 239 ----------AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308 (924)
Q Consensus 239 ----------~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~ 308 (924)
.....+++.|.||||+||+||....|.+||-+|+.|.+.|||||+|++.|||||++||||.+ .
T Consensus 942 ~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~g-------D 1014 (1330)
T KOG0949|consen 942 EFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAG-------D 1014 (1330)
T ss_pred hhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEec-------c
Confidence 01125678899999999999999999999999999999999999999999999999999983 2
Q ss_pred cccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHH
Q 002426 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373 (924)
Q Consensus 309 ~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnl 373 (924)
..-++|-.|.||+|||||||+|..|+|+++--| ...+..++......|..++..+-..+|.+
T Consensus 1015 sLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP---~~kv~rLlts~L~diqG~~p~T~~~~l~l 1076 (1330)
T KOG0949|consen 1015 SLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP---RQKVQRLLTSLLPDIQGAYPYTNTSFLGL 1076 (1330)
T ss_pred ccccCchhHHhhhccccccccccccceEEEeCc---HHHHHHHHHHhhhcccCCCcchhhHHHHH
Confidence 356899999999999999999999999999776 45688888888777888777665556554
No 14
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=2.9e-27 Score=298.41 Aligned_cols=277 Identities=18% Similarity=0.186 Sum_probs=174.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHh----CCCCccEEEEcccCCCHHHHHHHhcccCCceEEecC-CCCccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY----CPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVP 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~----lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s-~~Rpvp 92 (924)
...|++|++||+||+|.|.+..||..++.++.+ ++.+.|+|+||||++|++++++||+.. .++.++.. ..++.+
T Consensus 119 r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~-~pv~Iv~~~~~r~~~ 197 (1490)
T PRK09751 119 RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGD-RPVTVVNPPAMRHPQ 197 (1490)
T ss_pred hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCC-CCEEEECCCCCcccc
Confidence 357999999999999999998899988776644 467899999999999999999999753 34655543 345566
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
+..++...+ ...+... .. .. +... .....
T Consensus 198 l~v~vp~~d-~~~~~~~-------------------------~~-~~-------~~~~-------------~~~r~---- 226 (1490)
T PRK09751 198 IRIVVPVAN-MDDVSSV-------------------------AS-GT-------GEDS-------------HAGRE---- 226 (1490)
T ss_pred eEEEEecCc-hhhcccc-------------------------cc-cc-------cccc-------------chhhh----
Confidence 654331111 0000000 00 00 0000 00000
Q ss_pred ccCchhHH-HHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCC---CCHHhHHHHHHHHHHHHhhCCcccchhHHhhh
Q 002426 173 RSQVPQVI-DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL---LDECEMSEVELALKRFRILYPDAVREPAIKGL 248 (924)
Q Consensus 173 ~~~~~~~~-~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l---~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L 248 (924)
....+.+. .++..+. ...++|||||||+.|+.++..|.+..- ..... .......+.... ....+.....-
T Consensus 227 ~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~ 300 (1490)
T PRK09751 227 GSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPS---IAVDAAHFESTS-GATSNRVQSSD 300 (1490)
T ss_pred hhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhcccccc---ccchhhhhhhcc-ccchhcccccc
Confidence 00011111 1222222 235899999999999999999864210 00000 000000110000 00000000000
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 249 ~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
...+.+|||+|++.+|..||+.|++|.+++||||+++++|||||++++||+ +..|.++.+|+||+|||||+
T Consensus 301 ~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~gsP~sVas~LQRiGRAGR~- 371 (1490)
T PRK09751 301 VFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VATPLSVASGLQRIGRAGHQ- 371 (1490)
T ss_pred ceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eCCCCCHHHHHHHhCCCCCC-
Confidence 124679999999999999999999999999999999999999999999999 77899999999999999997
Q ss_pred CCCccEEEEEeCCCCCHHH----HHHHHhCCCccccc
Q 002426 329 IDNRGHVVLVQTPYEGAEE----CCKLLFAGVEPLVS 361 (924)
Q Consensus 329 ~D~~G~vill~~~~~~~~~----~~~l~~~~~~pL~S 361 (924)
.+..+.++++..+..+.-+ +..++.+..+++..
T Consensus 372 ~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~ 408 (1490)
T PRK09751 372 VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTP 408 (1490)
T ss_pred CCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCC
Confidence 4566777777766444332 33466666776543
No 15
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=5.3e-26 Score=277.73 Aligned_cols=225 Identities=26% Similarity=0.260 Sum_probs=163.1
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhC-------CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCccc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 92 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-------p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rpvp 92 (924)
.++++++||+||+|.|.+ .||..+..++.++ +.++|+|++|||++|+.+++.|+.. .++.++..+..|.+
T Consensus 154 ~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g--~~~~~i~~~~~~~~ 230 (742)
T TIGR03817 154 FLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIG--APVVAVTEDGSPRG 230 (742)
T ss_pred HHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcC--CCeEEECCCCCCcC
Confidence 378999999999999987 5898877766543 5678999999999999999988764 34666766666655
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
..++..............+. ..+
T Consensus 231 ~~~~~~~~p~~~~~~~~~~~---------------------------------------------------------~~r 253 (742)
T TIGR03817 231 ARTVALWEPPLTELTGENGA---------------------------------------------------------PVR 253 (742)
T ss_pred ceEEEEecCCcccccccccc---------------------------------------------------------ccc
Confidence 43332211100000000000 000
Q ss_pred ccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 173 ~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
+.........+..+... ..++||||+||+.|+.++..|...- .. ....+..+|
T Consensus 254 ~~~~~~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l--------------~~------------~~~~l~~~v 306 (742)
T TIGR03817 254 RSASAEAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLL--------------GE------------VDPDLAERV 306 (742)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHH--------------Hh------------hccccccch
Confidence 00111233344555444 3599999999999999998875210 00 001133478
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
..||||+++.+|..+|+.|++|.+++||||+++++|||+|.+++||+ ++.|.+..+|+||+|||||+| ..
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~s~~~y~qRiGRaGR~G--~~ 376 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPGTRASLWQQAGRAGRRG--QG 376 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCCCHHHHHHhccccCCCC--CC
Confidence 89999999999999999999999999999999999999999999999 778999999999999999999 67
Q ss_pred cEEEEEeCC
Q 002426 333 GHVVLVQTP 341 (924)
Q Consensus 333 G~vill~~~ 341 (924)
|.++++..+
T Consensus 377 g~ai~v~~~ 385 (742)
T TIGR03817 377 ALVVLVARD 385 (742)
T ss_pred cEEEEEeCC
Confidence 999988764
No 16
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.94 E-value=1.2e-25 Score=279.62 Aligned_cols=273 Identities=21% Similarity=0.258 Sum_probs=179.7
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhC----CCCccEEEEcccCCCHHHHHHHhccc-----CCceEEecCCC-C
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC----PKEVQIICLSATVANADELAGWIGQI-----HGKTELITSSR-R 89 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l----p~~~qiV~LSATi~N~~e~a~wL~~~-----~~~~~vv~s~~-R 89 (924)
.|.++++||+||+|.|.+..||..++.++.++ +...|+|+||||++|.++++.|+... ..++.++...+ +
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k 248 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK 248 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc
Confidence 57899999999999999999999888776543 46789999999999999999999753 12233332221 1
Q ss_pred cccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhh
Q 002426 90 PVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 169 (924)
Q Consensus 90 pvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (924)
+.++.... +... +.+. . ..
T Consensus 249 ~~~i~v~~-p~~~---l~~~-------------------------~----------------------------~~---- 267 (876)
T PRK13767 249 PFDIKVIS-PVDD---LIHT-------------------------P----------------------------AE---- 267 (876)
T ss_pred cceEEEec-cCcc---cccc-------------------------c----------------------------cc----
Confidence 11111100 0000 0000 0 00
Q ss_pred hhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhc
Q 002426 170 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249 (924)
Q Consensus 170 ~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~ 249 (924)
.....+...+..+... ..++||||+|++.|+.++..|....- + ....
T Consensus 268 ----~~~~~l~~~L~~~i~~-~~~~LVF~nTr~~ae~la~~L~~~~~---~-------------------------~~~~ 314 (876)
T PRK13767 268 ----EISEALYETLHELIKE-HRTTLIFTNTRSGAERVLYNLRKRFP---E-------------------------EYDE 314 (876)
T ss_pred ----hhHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHhch---h-------------------------hccc
Confidence 0011223334443333 35899999999999999998863110 0 0122
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
.+|++|||+|++.+|..+|+.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||++.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCCCHHHHHHhcccCCCCCC
Confidence 48999999999999999999999999999999999999999999999998 6788999999999999999853
Q ss_pred -CCccEEEEEeCCCCCHHHH----HHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHH
Q 002426 330 -DNRGHVVLVQTPYEGAEEC----CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 404 (924)
Q Consensus 330 -D~~G~vill~~~~~~~~~~----~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (924)
...|.++.. ...+..++ .....+..+|+.... ..+..+.+-+.+... ..+.+++++..+
T Consensus 387 ~~~~g~ii~~--~~~~l~e~~~~~~~~~~~~ie~~~~~~-~~~dvl~q~i~~~~~-------------~~~~~~~~~~~~ 450 (876)
T PRK13767 387 EVSKGRIIVV--DRDDLVECAVLLKKAREGKIDRVHIPK-NPLDVLAQHIVGMAI-------------ERPWDIEEAYNI 450 (876)
T ss_pred CCCcEEEEEc--CchhHHHHHHHHHHHHhCCCCCCCCCC-CcHHHHHHHHHHHHH-------------cCCCCHHHHHHH
Confidence 245666553 33333332 234455555543321 123332222211111 236778888888
Q ss_pred HHhhHH
Q 002426 405 VEQSFG 410 (924)
Q Consensus 405 l~~sf~ 410 (924)
+.++|.
T Consensus 451 ~~~~~~ 456 (876)
T PRK13767 451 VRRAYP 456 (876)
T ss_pred HhccCC
Confidence 888764
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=2.7e-25 Score=260.43 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=158.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEe-cCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELI-TSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv-~s~~RpvpL~~ 95 (924)
.-.++++++|||||+|.|.+.+++..++.++..+|...|++++|||+++ ...++..+.. .+..+. ........+.+
T Consensus 142 ~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~i~~ 219 (460)
T PRK11776 142 TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQR--DPVEVKVESTHDLPAIEQ 219 (460)
T ss_pred CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcC--CCEEEEECcCCCCCCeeE
Confidence 3458899999999999999999999999999999999999999999985 3455554432 222222 22222222333
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+++... .
T Consensus 220 ~~~~~~-------~------------------------------------------------------------------ 226 (460)
T PRK11776 220 RFYEVS-------P------------------------------------------------------------------ 226 (460)
T ss_pred EEEEeC-------c------------------------------------------------------------------
Confidence 332100 0
Q ss_pred chhHHHHH-HHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTL-WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l-~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
. .....+ ..+......++||||+|++.|+.+++.|...++ .+..
T Consensus 227 ~-~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~----------------------------------~v~~ 271 (460)
T PRK11776 227 D-ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGF----------------------------------SALA 271 (460)
T ss_pred H-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCC----------------------------------cEEE
Confidence 0 001111 222233446899999999999999999975443 6788
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.
T Consensus 272 ~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d~p~~~~~yiqR~GRtGR~g--~~G~ 341 (460)
T PRK11776 272 LHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YELARDPEVHVHRIGRTGRAG--SKGL 341 (460)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ecCCCCHhHhhhhcccccCCC--Ccce
Confidence 999999999999999999999999999999999999999999999 778999999999999999999 7899
Q ss_pred EEEEeCCC
Q 002426 335 VVLVQTPY 342 (924)
Q Consensus 335 vill~~~~ 342 (924)
++.++.+.
T Consensus 342 ai~l~~~~ 349 (460)
T PRK11776 342 ALSLVAPE 349 (460)
T ss_pred EEEEEchh
Confidence 99888764
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=3.7e-25 Score=258.58 Aligned_cols=206 Identities=17% Similarity=0.188 Sum_probs=157.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCCcccceEE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWY 96 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~ 96 (924)
...++++++|||||+|.|.|.++...+..++..+|...|++++|||+++ ..+++.|+......+.+......+-.+.++
T Consensus 144 ~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 144 AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEE
Confidence 3458899999999999999999999999999999999999999999997 467777665322111111111111112222
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
+...+ .
T Consensus 224 ~~~~~-------~------------------------------------------------------------------- 229 (456)
T PRK10590 224 VHFVD-------K------------------------------------------------------------------- 229 (456)
T ss_pred EEEcC-------H-------------------------------------------------------------------
Confidence 11000 0
Q ss_pred hhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 177 PQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 177 ~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
.....++..+. .....++||||+|+..|+.+++.|...++ .+..+
T Consensus 230 ~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~----------------------------------~~~~l 275 (456)
T PRK10590 230 KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI----------------------------------RSAAI 275 (456)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC----------------------------------CEEEE
Confidence 00011222222 34456899999999999999998875443 46789
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.+
T Consensus 276 hg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~~yvqR~GRaGR~g--~~G~a 345 (456)
T PRK10590 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YELPNVPEDYVHRIGRTGRAA--ATGEA 345 (456)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHHHhhhhccccccCC--CCeeE
Confidence 99999999999999999999999999999999999999999999 788999999999999999999 68899
Q ss_pred EEEeCC
Q 002426 336 VLVQTP 341 (924)
Q Consensus 336 ill~~~ 341 (924)
++++..
T Consensus 346 i~l~~~ 351 (456)
T PRK10590 346 LSLVCV 351 (456)
T ss_pred EEEecH
Confidence 887765
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=252.59 Aligned_cols=213 Identities=21% Similarity=0.263 Sum_probs=158.4
Q ss_pred CCCCCCCccEEEEccccccCCCCchHHHHHHHHhC-CCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCCcccce
Q 002426 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 17 ~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-p~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
+.-.|++|.|+|+||||.|.|.+|.+.++.|+..+ ++..|++++|||.|- .+.||.=+-. + |++
T Consensus 233 g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~------------~~~ 298 (519)
T KOG0331|consen 233 GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--N------------PIQ 298 (519)
T ss_pred CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--C------------ceE
Confidence 35668999999999999999999999999999999 556689999999994 5666653321 1 122
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+.+.....+ ..+..+ ..++. . .+ ...
T Consensus 299 i~ig~~~~~---------~a~~~i-~qive---~----------------------------------~~--~~~----- 324 (519)
T KOG0331|consen 299 INVGNKKEL---------KANHNI-RQIVE---V----------------------------------CD--ETA----- 324 (519)
T ss_pred EEecchhhh---------hhhcch-hhhhh---h----------------------------------cC--HHH-----
Confidence 111100000 000000 00000 0 00 000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
-...+..+|.........++||||.|++.|+.++..+...++ +...
T Consensus 325 K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~----------------------------------~a~~ 370 (519)
T KOG0331|consen 325 KLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW----------------------------------PAVA 370 (519)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc----------------------------------ceee
Confidence 011233445555444556899999999999999999875433 5677
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||+.++.+|+.++..|++|...|||||+.+|+|+|+|.+.+||+ ++.|.++.+|+||+||+||+| ..|.
T Consensus 371 iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdYVHRiGRTGRa~--~~G~ 440 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDYVHRIGRTGRAG--KKGT 440 (519)
T ss_pred ecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCHHHHHhhcCccccCC--CCce
Confidence 999999999999999999999999999999999999999999999 889999999999999999998 8999
Q ss_pred EEEEeCC
Q 002426 335 VVLVQTP 341 (924)
Q Consensus 335 vill~~~ 341 (924)
++.+.+.
T Consensus 441 A~tfft~ 447 (519)
T KOG0331|consen 441 AITFFTS 447 (519)
T ss_pred EEEEEeH
Confidence 9988865
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=3.6e-25 Score=262.05 Aligned_cols=207 Identities=21% Similarity=0.237 Sum_probs=153.0
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEec-CCCCccc-ce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELIT-SSRRPVP-LT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~-s~~Rpvp-L~ 94 (924)
.-.++++++|||||||.|.|.++...+..++..++ ..|++++|||+++ .+.++.++.. .+..+.. ...++.. +.
T Consensus 265 ~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~--~~~~i~~~~~~~~~~~v~ 341 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAK--DIILISIGNPNRPNKAVK 341 (518)
T ss_pred CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCccee
Confidence 45689999999999999999988888888887775 5899999999997 4667777653 2222211 1112211 11
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+++.. ++. .+
T Consensus 342 q~~~~-------~~~-------------------------------------------------------~~-------- 351 (518)
T PLN00206 342 QLAIW-------VET-------------------------------------------------------KQ-------- 351 (518)
T ss_pred EEEEe-------ccc-------------------------------------------------------hh--------
Confidence 11100 000 00
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhh-CCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~-~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
....+.+++.... ....++||||+|+..|+.+++.|.. .+ ..+.
T Consensus 352 k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g----------------------------------~~~~ 396 (518)
T PLN00206 352 KKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTG----------------------------------LKAL 396 (518)
T ss_pred HHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccC----------------------------------cceE
Confidence 0001222222211 1235899999999999999988752 12 1467
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
.+||++++.+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.+..+|+||+|||||.| ..|
T Consensus 397 ~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~~~yihRiGRaGR~g--~~G 466 (518)
T PLN00206 397 SIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTIKEYIHQIGRASRMG--EKG 466 (518)
T ss_pred EeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCHHHHHHhccccccCC--CCe
Confidence 8999999999999999999999999999999999999999999999 778999999999999999999 789
Q ss_pred EEEEEeCCC
Q 002426 334 HVVLVQTPY 342 (924)
Q Consensus 334 ~vill~~~~ 342 (924)
.+++++++.
T Consensus 467 ~ai~f~~~~ 475 (518)
T PLN00206 467 TAIVFVNEE 475 (518)
T ss_pred EEEEEEchh
Confidence 999888764
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.4e-25 Score=258.06 Aligned_cols=210 Identities=22% Similarity=0.293 Sum_probs=163.4
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc-CCceEEecC--CC--Cccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITS--SR--RPVP 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s--~~--Rpvp 92 (924)
.-.+++++++|+||+|.|+|.+|...++.++..+|.+.|+++||||+|+ .+..|.... ++|+.+... .. -+-.
T Consensus 169 ~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~ 246 (513)
T COG0513 169 KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKK 246 (513)
T ss_pred CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccC
Confidence 3468999999999999999999999999999999999999999999996 455555432 223322221 11 1122
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
+.|+++...
T Consensus 247 i~q~~~~v~----------------------------------------------------------------------- 255 (513)
T COG0513 247 IKQFYLEVE----------------------------------------------------------------------- 255 (513)
T ss_pred ceEEEEEeC-----------------------------------------------------------------------
Confidence 333332110
Q ss_pred ccCchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccc
Q 002426 173 RSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG 251 (924)
Q Consensus 173 ~~~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~G 251 (924)
........+..+. ......+||||+|+..|+.++..|...++ .
T Consensus 256 --~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~----------------------------------~ 299 (513)
T COG0513 256 --SEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF----------------------------------K 299 (513)
T ss_pred --CHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC----------------------------------e
Confidence 0001223333333 33444699999999999999999886554 5
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 252 Va~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
++.+||+|++.+|..+...|++|.++|||||+++|+|||+|.+++||+ ++.|.++..|+||+||+||+| .
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD~p~~~e~yvHRiGRTgRaG--~ 369 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YDLPLDPEDYVHRIGRTGRAG--R 369 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------ccCCCCHHHheeccCccccCC--C
Confidence 788999999999999999999999999999999999999999999999 889999999999999999999 8
Q ss_pred ccEEEEEeCCCCCHH
Q 002426 332 RGHVVLVQTPYEGAE 346 (924)
Q Consensus 332 ~G~vill~~~~~~~~ 346 (924)
.|.++.++.+.++..
T Consensus 370 ~G~ai~fv~~~~e~~ 384 (513)
T COG0513 370 KGVAISFVTEEEEVK 384 (513)
T ss_pred CCeEEEEeCcHHHHH
Confidence 999999998743333
No 22
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=3.4e-25 Score=255.16 Aligned_cols=206 Identities=21% Similarity=0.279 Sum_probs=151.7
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCC--CCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSS--RRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~--~RpvpL~ 94 (924)
...++++++||+||+|.+.+.+++..+.+++..++++.|+|++|||+||. .++..... ..+..+.... .....+.
T Consensus 165 ~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (401)
T PTZ00424 165 HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIR 242 (401)
T ss_pred CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCce
Confidence 34689999999999999998888888999999999999999999999962 22222211 1111111110 0000011
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+++.... ..
T Consensus 243 ~~~~~~~---------------------------------------------------------------~~-------- 251 (401)
T PTZ00424 243 QFYVAVE---------------------------------------------------------------KE-------- 251 (401)
T ss_pred EEEEecC---------------------------------------------------------------hH--------
Confidence 1110000 00
Q ss_pred CchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 175 QVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 175 ~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
......+..+. .....++||||+|++.|+.+++.|...++ +++
T Consensus 252 --~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~----------------------------------~~~ 295 (401)
T PTZ00424 252 --EWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDF----------------------------------TVS 295 (401)
T ss_pred --HHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC----------------------------------cEE
Confidence 00011122222 23445899999999999999988864332 689
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
+|||+|++.+|..++..|++|.++|||||+++++|||+|.+++||+ ++.|.+..+|+||+|||||.| ..|
T Consensus 296 ~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~p~s~~~y~qr~GRagR~g--~~G 365 (401)
T PTZ00424 296 CMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YDLPASPENYIHRIGRSGRFG--RKG 365 (401)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------ECCCCCHHHEeecccccccCC--CCc
Confidence 9999999999999999999999999999999999999999999998 778999999999999999998 689
Q ss_pred EEEEEeCCC
Q 002426 334 HVVLVQTPY 342 (924)
Q Consensus 334 ~vill~~~~ 342 (924)
.|++++++.
T Consensus 366 ~~i~l~~~~ 374 (401)
T PTZ00424 366 VAINFVTPD 374 (401)
T ss_pred eEEEEEcHH
Confidence 999988764
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=1.6e-24 Score=252.06 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=157.1
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC--HHHHHHHhcccCCceEEecCCCCc--ccceE
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITSSRRP--VPLTW 95 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N--~~e~a~wL~~~~~~~~vv~s~~Rp--vpL~~ 95 (924)
.++++++|||||+|.|.+.+++..++.+...++...|+++||||++. ..+|+.|+... +..+.....+. -.+.+
T Consensus 144 ~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~ 221 (434)
T PRK11192 144 DCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLND--PVEVEAEPSRRERKKIHQ 221 (434)
T ss_pred CcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccC--CEEEEecCCcccccCceE
Confidence 47899999999999999999999999999999989999999999974 57788887532 22221111100 01111
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
++...+ .
T Consensus 222 ~~~~~~-------------------------------------------------------------------------~ 228 (434)
T PRK11192 222 WYYRAD-------------------------------------------------------------------------D 228 (434)
T ss_pred EEEEeC-------------------------------------------------------------------------C
Confidence 110000 0
Q ss_pred chhHHHHHHHHHhC-CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWHLRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~l~~~-~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.....+++..+... ...++||||+|+..|+.++..|...++ .+++
T Consensus 229 ~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~----------------------------------~~~~ 274 (434)
T PRK11192 229 LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGI----------------------------------NCCY 274 (434)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCC----------------------------------CEEE
Confidence 00122334444432 556899999999999999999875442 5789
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ++.|.+...|+||+|||||.| ..|.
T Consensus 275 l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d~p~s~~~yiqr~GR~gR~g--~~g~ 344 (434)
T PRK11192 275 LEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FDMPRSADTYLHRIGRTGRAG--RKGT 344 (434)
T ss_pred ecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------ECCCCCHHHHhhcccccccCC--CCce
Confidence 999999999999999999999999999999999999999999999 778999999999999999999 6788
Q ss_pred EEEEeCC
Q 002426 335 VVLVQTP 341 (924)
Q Consensus 335 vill~~~ 341 (924)
++++.+.
T Consensus 345 ai~l~~~ 351 (434)
T PRK11192 345 AISLVEA 351 (434)
T ss_pred EEEEecH
Confidence 8887754
No 24
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.8e-25 Score=236.49 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=162.7
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcc-cCCceEEec-CCCCccc-ceE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ-IHGKTELIT-SSRRPVP-LTW 95 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~-~~~~~~vv~-s~~Rpvp-L~~ 95 (924)
=.|..++++|+||||.+.|.+|++.+..|+..+|...|.+++|||++ +.+.+.... .+.|+.+.. +.|+.|| |.+
T Consensus 200 f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ 277 (476)
T KOG0330|consen 200 FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQ 277 (476)
T ss_pred ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhh
Confidence 35889999999999999999999999999999999999999999999 333333322 345555544 3455554 333
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|....+ . | +
T Consensus 278 ~ylfv~~---------k--------------------~-------------------------------K---------- 287 (476)
T KOG0330|consen 278 TYLFVPG---------K--------------------D-------------------------------K---------- 287 (476)
T ss_pred heEeccc---------c--------------------c-------------------------------c----------
Confidence 3321000 0 0 0
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...++.++++ ....+.||||++...++.++-.|..+++.. -.+
T Consensus 288 ~~yLV~ll~e---~~g~s~iVF~~t~~tt~~la~~L~~lg~~a----------------------------------~~L 330 (476)
T KOG0330|consen 288 DTYLVYLLNE---LAGNSVIVFCNTCNTTRFLALLLRNLGFQA----------------------------------IPL 330 (476)
T ss_pred chhHHHHHHh---hcCCcEEEEEeccchHHHHHHHHHhcCcce----------------------------------ecc
Confidence 1123333443 344699999999999999999998777633 348
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
||.|++..|.-.++.|++|...||+||+++++|+|+|.+++||+ |+.|.+..+|+||+||+||+| ..|.+
T Consensus 331 hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yDiP~~skDYIHRvGRtaRaG--rsG~~ 400 (476)
T KOG0330|consen 331 HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YDIPTHSKDYIHRVGRTARAG--RSGKA 400 (476)
T ss_pred cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cCCCCcHHHHHHHcccccccC--CCcce
Confidence 99999999999999999999999999999999999999999999 899999999999999999999 89999
Q ss_pred EEEeCCCC
Q 002426 336 VLVQTPYE 343 (924)
Q Consensus 336 ill~~~~~ 343 (924)
|.+++.++
T Consensus 401 ItlVtqyD 408 (476)
T KOG0330|consen 401 ITLVTQYD 408 (476)
T ss_pred EEEEehhh
Confidence 98887643
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6e-25 Score=228.92 Aligned_cols=228 Identities=20% Similarity=0.233 Sum_probs=170.3
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEE-ecCCCCcccceEE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTEL-ITSSRRPVPLTWY 96 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~v-v~s~~RpvpL~~~ 96 (924)
..++++..+|+||||.|.+.+|++.+|.+|..||+..|++++|||+|. ...|-+-- .++|..+ ...+-.+..+.+|
T Consensus 223 a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~--l~kPy~INLM~eLtl~GvtQy 300 (459)
T KOG0326|consen 223 ADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRH--LKKPYEINLMEELTLKGVTQY 300 (459)
T ss_pred ccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHh--ccCcceeehhhhhhhcchhhh
Confidence 458899999999999999999999999999999999999999999996 34443311 1222111 1122222333333
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
|.... +
T Consensus 301 YafV~-------e------------------------------------------------------------------- 306 (459)
T KOG0326|consen 301 YAFVE-------E------------------------------------------------------------------- 306 (459)
T ss_pred eeeec-------h-------------------------------------------------------------------
Confidence 21100 0
Q ss_pred hhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 177 PQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 177 ~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...+..++.|. +-...++||||||...+|.+|+.+..+++ ...|.
T Consensus 307 ~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGy----------------------------------scyyi 352 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGY----------------------------------SCYYI 352 (459)
T ss_pred hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccc----------------------------------hhhHH
Confidence 01122233322 22445899999999999999999987775 34678
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
|+.|.+..|..|...|++|..+.||||+.+-+|||++|++|||+ ++.|-++..|+||+||+||-| ..|.+
T Consensus 353 HakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FDfpk~aEtYLHRIGRsGRFG--hlGlA 422 (459)
T KOG0326|consen 353 HAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FDFPKNAETYLHRIGRSGRFG--HLGLA 422 (459)
T ss_pred HHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cCCCCCHHHHHHHccCCccCC--CcceE
Confidence 99999999999999999999999999999999999999999999 889999999999999999999 89999
Q ss_pred EEEeC--CCCCHHHHHHHHhCCCcccccccCCc
Q 002426 336 VLVQT--PYEGAEECCKLLFAGVEPLVSQFTAS 366 (924)
Q Consensus 336 ill~~--~~~~~~~~~~l~~~~~~pL~S~~~~~ 366 (924)
|-+.+ .......+.+-+-.+..|+.|.+..+
T Consensus 423 InLityedrf~L~~IE~eLGtEI~pip~~iDk~ 455 (459)
T KOG0326|consen 423 INLITYEDRFNLYRIEQELGTEIKPIPSNIDKS 455 (459)
T ss_pred EEEEehhhhhhHHHHHHHhccccccCCCcCCcc
Confidence 85543 22233344456667777887766544
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1.8e-24 Score=259.59 Aligned_cols=206 Identities=20% Similarity=0.212 Sum_probs=157.0
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEec-CCCCcc-cce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELIT-SSRRPV-PLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~-s~~Rpv-pL~ 94 (924)
.-.++++++|||||+|.|.+.++...++.++..+|...|+++||||+|+. ..++..+.. .+..+.. ...... .+.
T Consensus 144 ~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~--~~~~i~i~~~~~~~~~i~ 221 (629)
T PRK11634 144 TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK--EPQEVRIQSSVTTRPDIS 221 (629)
T ss_pred CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcC--CCeEEEccCccccCCceE
Confidence 34588999999999999999999999999999999999999999999963 445543322 2222211 111111 112
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+.++...
T Consensus 222 q~~~~v~------------------------------------------------------------------------- 228 (629)
T PRK11634 222 QSYWTVW------------------------------------------------------------------------- 228 (629)
T ss_pred EEEEEec-------------------------------------------------------------------------
Confidence 2111000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.......+...+......++||||+|+..|+.++..|...++ .+..
T Consensus 229 ~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~----------------------------------~~~~ 274 (629)
T PRK11634 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGY----------------------------------NSAA 274 (629)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC----------------------------------CEEE
Confidence 000011122333334456899999999999999999975553 5678
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||+|++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++..|+||+|||||.| ..|.
T Consensus 275 lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d~P~~~e~yvqRiGRtGRaG--r~G~ 344 (629)
T PRK11634 275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YDIPMDSESYVHRIGRTGRAG--RAGR 344 (629)
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eCCCCCHHHHHHHhccccCCC--Ccce
Confidence 999999999999999999999999999999999999999999999 788999999999999999999 7899
Q ss_pred EEEEeCCC
Q 002426 335 VVLVQTPY 342 (924)
Q Consensus 335 vill~~~~ 342 (924)
+++++.+.
T Consensus 345 ai~~v~~~ 352 (629)
T PRK11634 345 ALLFVENR 352 (629)
T ss_pred EEEEechH
Confidence 99998764
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=2.6e-24 Score=256.67 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=152.4
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCC--CccEEEEcccCCC-HHHHH-HHhcccCCceEEecCC--CCcccc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVAN-ADELA-GWIGQIHGKTELITSS--RRPVPL 93 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~--~~qiV~LSATi~N-~~e~a-~wL~~~~~~~~vv~s~--~RpvpL 93 (924)
.++.+++|||||+|.|.|.++...++.++..+|. ..|+++||||+++ ..++. .++. .+..++... ..+..+
T Consensus 156 ~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~---~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 156 SLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN---EPEKLVVETETITAARV 232 (572)
T ss_pred chhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc---CCcEEEeccccccccce
Confidence 4788999999999999999999999999988886 7899999999985 23333 3332 122222111 111112
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
.+++.... .
T Consensus 233 ~q~~~~~~---------------------------------------------------------------~-------- 241 (572)
T PRK04537 233 RQRIYFPA---------------------------------------------------------------D-------- 241 (572)
T ss_pred eEEEEecC---------------------------------------------------------------H--------
Confidence 22111000 0
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
...+..++..+......++||||+|+..|+.+++.|...++ .++
T Consensus 242 --~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~----------------------------------~v~ 285 (572)
T PRK04537 242 --EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY----------------------------------RVG 285 (572)
T ss_pred --HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEE
Confidence 00011122223334556899999999999999999875443 589
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
++||+|++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..|
T Consensus 286 ~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s~~~yvqRiGRaGR~G--~~G 355 (572)
T PRK04537 286 VLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFDAEDYVHRIGRTARLG--EEG 355 (572)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCCHHHHhhhhcccccCC--CCc
Confidence 9999999999999999999999999999999999999999999999 788999999999999999999 689
Q ss_pred EEEEEeCC
Q 002426 334 HVVLVQTP 341 (924)
Q Consensus 334 ~vill~~~ 341 (924)
.+|+++.+
T Consensus 356 ~ai~~~~~ 363 (572)
T PRK04537 356 DAISFACE 363 (572)
T ss_pred eEEEEecH
Confidence 99988765
No 28
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=2.4e-24 Score=255.99 Aligned_cols=210 Identities=18% Similarity=0.182 Sum_probs=158.0
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCC-c--ccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRR-P--VPL 93 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~R-p--vpL 93 (924)
...|+++++|||||||.|.|.++...+..++..+++..|++++|||+|. ...++.++... .++.+...... . ..+
T Consensus 272 ~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~-~~v~i~vg~~~l~~~~~i 350 (545)
T PTZ00110 272 VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKE-EPVHVNVGSLDLTACHNI 350 (545)
T ss_pred CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhcc-CCEEEEECCCccccCCCe
Confidence 4568899999999999999999999999999999999999999999985 45566665421 12222211110 0 001
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
.+.+.. ++. .
T Consensus 351 ~q~~~~-------~~~--------------------------------------------------------~------- 360 (545)
T PTZ00110 351 KQEVFV-------VEE--------------------------------------------------------H------- 360 (545)
T ss_pred eEEEEE-------Eec--------------------------------------------------------h-------
Confidence 111100 000 0
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
.....+..++..+.. ...++||||+|++.|+.++..|...++ .+.
T Consensus 361 ~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~----------------------------------~~~ 405 (545)
T PTZ00110 361 EKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGW----------------------------------PAL 405 (545)
T ss_pred hHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCC----------------------------------cEE
Confidence 000122333333332 446899999999999999998864443 456
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
.+||++++.+|+.++..|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..|
T Consensus 406 ~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~~yvqRiGRtGR~G--~~G 475 (545)
T PTZ00110 406 CIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIEDYVHRIGRTGRAG--AKG 475 (545)
T ss_pred EEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHHHHHHHhcccccCC--CCc
Confidence 7999999999999999999999999999999999999999999999 788999999999999999999 789
Q ss_pred EEEEEeCCCC
Q 002426 334 HVVLVQTPYE 343 (924)
Q Consensus 334 ~vill~~~~~ 343 (924)
.++++.++.+
T Consensus 476 ~ai~~~~~~~ 485 (545)
T PTZ00110 476 ASYTFLTPDK 485 (545)
T ss_pred eEEEEECcch
Confidence 9998887643
No 29
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.92 E-value=8.1e-24 Score=233.17 Aligned_cols=204 Identities=24% Similarity=0.305 Sum_probs=161.9
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCC-------------------------CccEEEEcccCCCH-HHHHH-
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-------------------------EVQIICLSATVANA-DELAG- 72 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~-------------------------~~qiV~LSATi~N~-~e~a~- 72 (924)
.|+++.+||+||++.|.|.+|.+.+..+|.++|. -.|.++||||+|-+ +-++.
T Consensus 393 vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 4788999999999999999999999999988862 17999999999963 55554
Q ss_pred HhcccCCce-EEecCCCCcccce-EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCC
Q 002426 73 WIGQIHGKT-ELITSSRRPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMN 150 (924)
Q Consensus 73 wL~~~~~~~-~vv~s~~RpvpL~-~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (924)
+|. .|+ ..+.+-.+|+|.. |.+..- .+
T Consensus 473 ylr---~pv~vtig~~gk~~~rveQ~v~m~-------~e----------------------------------------- 501 (673)
T KOG0333|consen 473 YLR---RPVVVTIGSAGKPTPRVEQKVEMV-------SE----------------------------------------- 501 (673)
T ss_pred Hhh---CCeEEEeccCCCCccchheEEEEe-------cc-----------------------------------------
Confidence 443 333 3344556777653 222100 00
Q ss_pred CCccccccccccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 002426 151 SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 230 (924)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~ 230 (924)
......++..+......|+|||+|++++|+.+|+.|.+.++
T Consensus 502 -------------------------d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-------------- 542 (673)
T KOG0333|consen 502 -------------------------DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-------------- 542 (673)
T ss_pred -------------------------hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc--------------
Confidence 00111222333344467999999999999999999987664
Q ss_pred HHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcc
Q 002426 231 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310 (924)
Q Consensus 231 ~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~ 310 (924)
.+..+|||-++.+|+.++..|++|...|||||+++++|||+|.++.||+ ++.
T Consensus 543 --------------------~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydm 594 (673)
T KOG0333|consen 543 --------------------KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDM 594 (673)
T ss_pred --------------------eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cch
Confidence 6788999999999999999999999999999999999999999999999 888
Q ss_pred cCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 311 pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
.-+..+|+||+||+||+| ..|.++.+.++.+
T Consensus 595 aksieDYtHRIGRTgRAG--k~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAG--KSGTAISFLTPAD 625 (673)
T ss_pred hhhHHHHHHHhccccccc--cCceeEEEeccch
Confidence 899999999999999999 8999999988755
No 30
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.2e-24 Score=221.51 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=156.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
+-.-+.|+++|+||+|.|.+.+++..+..+..++|+..|++++|||+| +++.+-.... -|-|+..+.
T Consensus 164 ~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp--~eilemt~kf-----------mtdpvrilv 230 (400)
T KOG0328|consen 164 SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP--HEILEMTEKF-----------MTDPVRILV 230 (400)
T ss_pred cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc--HHHHHHHHHh-----------cCCceeEEE
Confidence 334678999999999999999999999999999999999999999999 5555544321 122333222
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
.... + ++ +| +...|+. .+.. .
T Consensus 231 krde-l-tl---Eg------IKqf~v~---ve~E---------------------------------------------e 251 (400)
T KOG0328|consen 231 KRDE-L-TL---EG------IKQFFVA---VEKE---------------------------------------------E 251 (400)
T ss_pred ecCC-C-ch---hh------hhhheee---echh---------------------------------------------h
Confidence 1100 0 00 00 0000110 0000 0
Q ss_pred hHHHHHHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 178 QVIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 178 ~~~~~l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
..++++..|.. -...+++|||+|++.++++.+.+...+| .|...|
T Consensus 252 wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf----------------------------------tVssmH 297 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF----------------------------------TVSSMH 297 (400)
T ss_pred hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc----------------------------------eeeecc
Confidence 11233344432 2345899999999999999999986654 577799
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
|.|.+.+|+.+...|+.|.-+||++|++.|+|+|+|-++.||+ |+.|.....|+||+||+||-| ..|.+|
T Consensus 298 GDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YDLP~nre~YIHRIGRSGRFG--RkGvai 367 (400)
T KOG0328|consen 298 GDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDLPNNRELYIHRIGRSGRFG--RKGVAI 367 (400)
T ss_pred CCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cCCCccHHHHhhhhccccccC--CcceEE
Confidence 9999999999999999999999999999999999999999999 899999999999999999999 899999
Q ss_pred EEeCC
Q 002426 337 LVQTP 341 (924)
Q Consensus 337 ll~~~ 341 (924)
-+..+
T Consensus 368 nFVk~ 372 (400)
T KOG0328|consen 368 NFVKS 372 (400)
T ss_pred EEecH
Confidence 77755
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=6e-24 Score=246.46 Aligned_cols=204 Identities=20% Similarity=0.200 Sum_probs=151.7
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCC--CccEEEEcccCCCH-HHHH-HHhcccCCceEEecCC-CC-cc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVANA-DELA-GWIGQIHGKTELITSS-RR-PV 91 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~--~~qiV~LSATi~N~-~e~a-~wL~~~~~~~~vv~s~-~R-pv 91 (924)
.-.++++++||+||||.|.|.++...++.++..+|. ..+.+++|||++.. .+++ .++. .+..+.... .. ..
T Consensus 152 ~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~---~p~~i~v~~~~~~~~ 228 (423)
T PRK04837 152 HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN---NPEYVEVEPEQKTGH 228 (423)
T ss_pred CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC---CCEEEEEcCCCcCCC
Confidence 345889999999999999999999999888888874 56789999999852 3333 2332 222222111 00 00
Q ss_pred cceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhh
Q 002426 92 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171 (924)
Q Consensus 92 pL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (924)
.+.+.+...
T Consensus 229 ~i~~~~~~~----------------------------------------------------------------------- 237 (423)
T PRK04837 229 RIKEELFYP----------------------------------------------------------------------- 237 (423)
T ss_pred ceeEEEEeC-----------------------------------------------------------------------
Confidence 111110000
Q ss_pred hccCchhHHHHHHH-HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc
Q 002426 172 RRSQVPQVIDTLWH-LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250 (924)
Q Consensus 172 ~~~~~~~~~~~l~~-l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~ 250 (924)
........+.. +......++||||+|+..|+.++..|...++
T Consensus 238 ---~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~---------------------------------- 280 (423)
T PRK04837 238 ---SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH---------------------------------- 280 (423)
T ss_pred ---CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC----------------------------------
Confidence 00011112222 2233456899999999999999999875443
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
.++++||+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.|
T Consensus 281 ~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~yiqR~GR~gR~G-- 350 (423)
T PRK04837 281 RVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDYVHRIGRTGRAG-- 350 (423)
T ss_pred cEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhheEeccccccCCC--
Confidence 6889999999999999999999999999999999999999999999999 788999999999999999999
Q ss_pred CccEEEEEeCCC
Q 002426 331 NRGHVVLVQTPY 342 (924)
Q Consensus 331 ~~G~vill~~~~ 342 (924)
..|.++.+..+.
T Consensus 351 ~~G~ai~~~~~~ 362 (423)
T PRK04837 351 ASGHSISLACEE 362 (423)
T ss_pred CCeeEEEEeCHH
Confidence 789999888763
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.9e-23 Score=243.45 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=105.0
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
....+||||+|++.|+.++..|...++ .++.+||+|++.+|..+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~----------------------------------~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGI----------------------------------AAGAYHAGLEISARDDVHH 270 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCC----------------------------------CeeEeeCCCCHHHHHHHHH
Confidence 344679999999999999999975543 5788999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHH
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~ 349 (924)
.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+ .....
T Consensus 271 ~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~~P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d-~~~~~ 339 (470)
T TIGR00614 271 KFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YSLPKSMESYYQESGRAGRDG--LPSECHLFYAPAD-INRLR 339 (470)
T ss_pred HHHcCCCcEEEEechhhccCCcccceEEEE--------eCCCCCHHHHHhhhcCcCCCC--CCceEEEEechhH-HHHHH
Confidence 999999999999999999999999999999 778999999999999999999 7899999987643 44444
Q ss_pred HHHhCC
Q 002426 350 KLLFAG 355 (924)
Q Consensus 350 ~l~~~~ 355 (924)
.++...
T Consensus 340 ~~~~~~ 345 (470)
T TIGR00614 340 RLLMEE 345 (470)
T ss_pred HHHhcC
Confidence 554443
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=1.8e-23 Score=245.84 Aligned_cols=205 Identities=19% Similarity=0.182 Sum_probs=152.3
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCC--CccEEEEcccCCC-HHHHHHHhcccCCceEEe-cCCC-Cccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVAN-ADELAGWIGQIHGKTELI-TSSR-RPVP 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~--~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv-~s~~-Rpvp 92 (924)
...++++++|||||+|.+.+.++...+..++..++. ..|+|++|||+++ ..+++.++.. ++..+. .... ....
T Consensus 232 ~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 309 (475)
T PRK01297 232 EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTT--DPAIVEIEPENVASDT 309 (475)
T ss_pred CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhcc--CCEEEEeccCcCCCCc
Confidence 456899999999999999998898889989888864 5799999999874 4555554332 122111 1110 0001
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
+.+++....
T Consensus 310 ~~~~~~~~~----------------------------------------------------------------------- 318 (475)
T PRK01297 310 VEQHVYAVA----------------------------------------------------------------------- 318 (475)
T ss_pred ccEEEEEec-----------------------------------------------------------------------
Confidence 111110000
Q ss_pred ccCchhHHHHHHHH-HhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccc
Q 002426 173 RSQVPQVIDTLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG 251 (924)
Q Consensus 173 ~~~~~~~~~~l~~l-~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~G 251 (924)
.......+..+ ......++||||+|+..|+.+++.|...++ .
T Consensus 319 ---~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~----------------------------------~ 361 (475)
T PRK01297 319 ---GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI----------------------------------N 361 (475)
T ss_pred ---chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC----------------------------------C
Confidence 00011122222 234446899999999999999988864432 5
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 252 Va~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
++.+||++++.+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.+..+|+||+|||||+| .
T Consensus 362 ~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~s~~~y~Qr~GRaGR~g--~ 431 (475)
T PRK01297 362 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPEDPDDYVHRIGRTGRAG--A 431 (475)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCCCHHHHHHhhCccCCCC--C
Confidence 778999999999999999999999999999999999999999999999 778999999999999999999 6
Q ss_pred ccEEEEEeCCC
Q 002426 332 RGHVVLVQTPY 342 (924)
Q Consensus 332 ~G~vill~~~~ 342 (924)
.|.++++.++.
T Consensus 432 ~g~~i~~~~~~ 442 (475)
T PRK01297 432 SGVSISFAGED 442 (475)
T ss_pred CceEEEEecHH
Confidence 78999888653
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.9e-23 Score=225.47 Aligned_cols=222 Identities=17% Similarity=0.226 Sum_probs=163.7
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc-CCceEEecCCCCcccceEE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSSRRPVPLTWY 96 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s~~RpvpL~~~ 96 (924)
+=.|++|.++|+||+|+|++.+|...+.|+|..||.+.|.++||||+. +++.+....+ .+|+.++..+...++..
T Consensus 322 sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~-- 397 (691)
T KOG0338|consen 322 SFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPK-- 397 (691)
T ss_pred CccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchh--
Confidence 345899999999999999999999999999999999999999999998 5554444332 44666665543332211
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
|...++. .. .+. ..++ .
T Consensus 398 ---------------------LtQEFiR----------IR------~~r----------------e~dR----------e 414 (691)
T KOG0338|consen 398 ---------------------LTQEFIR----------IR------PKR----------------EGDR----------E 414 (691)
T ss_pred ---------------------hhHHHhe----------ec------ccc----------------cccc----------H
Confidence 1111110 00 000 0000 0
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 177 ~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
.-+..++..+. ...+|||+.|++.|..+.-.|.-+++ .+|-+|
T Consensus 415 a~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl----------------------------------~agElH 457 (691)
T KOG0338|consen 415 AMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGL----------------------------------KAGELH 457 (691)
T ss_pred HHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhc----------------------------------hhhhhc
Confidence 11222233332 34799999999999887655543332 566799
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
|.|++.+|-...+.|+++.|.||+||+++++|+||+.+.+||+ +..|.+...|+||+||++|+| ..|.+|
T Consensus 458 GsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 458 GSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YAMPKTIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------ccCchhHHHHHHHhhhhhhcc--cCcceE
Confidence 9999999999999999999999999999999999999999999 889999999999999999999 899999
Q ss_pred EEeCCCCCHHHHHHHHhC
Q 002426 337 LVQTPYEGAEECCKLLFA 354 (924)
Q Consensus 337 ll~~~~~~~~~~~~l~~~ 354 (924)
.++...+ ..-+..++..
T Consensus 528 tlvgE~d-RkllK~iik~ 544 (691)
T KOG0338|consen 528 TLVGESD-RKLLKEIIKS 544 (691)
T ss_pred EEecccc-HHHHHHHHhh
Confidence 9998754 4344444444
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=5.4e-23 Score=250.16 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=108.7
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
.++||||+||+.|+.++..|...++ .+++|||||++.+|..+++.|
T Consensus 681 esgIIYC~SRke~E~LAe~L~~~Gi----------------------------------ka~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQEFGH----------------------------------KAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHHHCCC----------------------------------CeeeeeCCCCHHHHHHHHHHH
Confidence 4789999999999999999976554 578899999999999999999
Q ss_pred hCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHH
Q 002426 272 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 351 (924)
Q Consensus 272 ~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l 351 (924)
.+|.++|||||++|+||||+|++++||+ ++.|.+...|+|++|||||.| ..|.|+++++.. +......+
T Consensus 727 ~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsYyQriGRAGRDG--~~g~cILlys~~-D~~~~~~l 795 (1195)
T PLN03137 727 SKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGYHQECGRAGRDG--QRSSCVLYYSYS-DYIRVKHM 795 (1195)
T ss_pred hcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCHHHHHhhhcccCCCC--CCceEEEEecHH-HHHHHHHH
Confidence 9999999999999999999999999999 889999999999999999999 789999998753 33334444
Q ss_pred HhCCCcccccccCCch
Q 002426 352 LFAGVEPLVSQFTASY 367 (924)
Q Consensus 352 ~~~~~~pL~S~~~~~~ 367 (924)
+... ..-.|.+...|
T Consensus 796 I~~~-~~~~s~~~~~~ 810 (1195)
T PLN03137 796 ISQG-GVEQSPMAMGY 810 (1195)
T ss_pred Hhcc-ccccchhhhhh
Confidence 4332 22234444444
No 36
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=240.01 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=165.7
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCC-Ccccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVANADELAGWIGQIHGKTELITSSR-RPVPL 93 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~-RpvpL 93 (924)
.+.|.+|+|||+||+|-+.+..||..+-..+.+| -.+.|-|+||||++|+++++.||....++|.++.... ++..+
T Consensus 144 r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i 223 (814)
T COG1201 144 RELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEI 223 (814)
T ss_pred HHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceE
Confidence 4678999999999999999999999887766554 2289999999999999999999998766777775443 22222
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
........ .. + . .
T Consensus 224 ~v~~p~~~-------~~----------------------~------------------------------~--------~ 236 (814)
T COG1201 224 KVISPVED-------LI----------------------Y------------------------------D--------E 236 (814)
T ss_pred EEEecCCc-------cc----------------------c------------------------------c--------c
Confidence 21110000 00 0 0 0
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
......+..+..+.+... .+|||+|||..+|.++..|..... ..|+
T Consensus 237 ~~~~~~~~~i~~~v~~~~-ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------~~i~ 282 (814)
T COG1201 237 ELWAALYERIAELVKKHR-TTLIFTNTRSGAERLAFRLKKLGP---------------------------------DIIE 282 (814)
T ss_pred chhHHHHHHHHHHHhhcC-cEEEEEeChHHHHHHHHHHHHhcC---------------------------------Ccee
Confidence 012234455566655544 899999999999999999874331 3799
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
.|||.++...|..+|+.|++|.+|++|||+++..|||+-.+..||+ ...|.+++-++||+||||++. +...
T Consensus 283 ~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~lQRiGRsgHr~-~~~S 353 (814)
T COG1201 283 VHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRFLQRIGRAGHRL-GEVS 353 (814)
T ss_pred eecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHHhHhcccccccc-CCcc
Confidence 9999999999999999999999999999999999999999999999 778999999999999999875 3445
Q ss_pred EEEEEeCCCC
Q 002426 334 HVVLVQTPYE 343 (924)
Q Consensus 334 ~vill~~~~~ 343 (924)
..++++....
T Consensus 354 kg~ii~~~r~ 363 (814)
T COG1201 354 KGIIIAEDRD 363 (814)
T ss_pred cEEEEecCHH
Confidence 5565655433
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=3.2e-22 Score=240.90 Aligned_cols=125 Identities=25% Similarity=0.287 Sum_probs=106.9
Q ss_pred HHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHH
Q 002426 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK 264 (924)
Q Consensus 185 ~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R 264 (924)
.+......++||||+|++.|+.++..|...++ .++++||||++.+|
T Consensus 230 ~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~----------------------------------~v~~~Ha~l~~~~R 275 (607)
T PRK11057 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSRGI----------------------------------SAAAYHAGLDNDVR 275 (607)
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC----------------------------------CEEEecCCCCHHHH
Confidence 33344556899999999999999999975543 57899999999999
Q ss_pred HHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCC
Q 002426 265 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344 (924)
Q Consensus 265 ~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~ 344 (924)
..+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 276 ~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d~P~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d- 344 (607)
T PRK11057 276 ADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPAD- 344 (607)
T ss_pred HHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eCCCCCHHHHHHHhhhccCCC--CCceEEEEeCHHH-
Confidence 99999999999999999999999999999999999 778999999999999999999 6789999887643
Q ss_pred HHHHHHHHhC
Q 002426 345 AEECCKLLFA 354 (924)
Q Consensus 345 ~~~~~~l~~~ 354 (924)
...+..++..
T Consensus 345 ~~~~~~~~~~ 354 (607)
T PRK11057 345 MAWLRRCLEE 354 (607)
T ss_pred HHHHHHHHhc
Confidence 3333444433
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=2.7e-21 Score=233.19 Aligned_cols=109 Identities=27% Similarity=0.320 Sum_probs=99.0
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+|++.|+.+++.|...++ .++++||||++.+|+.+++
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~----------------------------------~~~~~H~~l~~~~R~~i~~ 268 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGI----------------------------------SALAYHAGLSNKVRAENQE 268 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCC----------------------------------CEEEEECCCCHHHHHHHHH
Confidence 346899999999999999999875443 5688999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
.|.+|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.|++++++.
T Consensus 269 ~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~p~s~~~y~Q~~GRaGR~G--~~~~~il~~~~~ 331 (591)
T TIGR01389 269 DFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDMPGNLESYYQEAGRAGRDG--LPAEAILLYSPA 331 (591)
T ss_pred HHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCCCCCHHHHhhhhccccCCC--CCceEEEecCHH
Confidence 999999999999999999999999999999 778999999999999999999 678888887653
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=5e-21 Score=203.88 Aligned_cols=213 Identities=19% Similarity=0.166 Sum_probs=154.4
Q ss_pred CCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCCcccceEEec
Q 002426 21 LFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFS 98 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~~ 98 (924)
++.++++|+||++.|.| .+++..---+...+|++.|+|++|||... ...|+.-+-...++..+-..+-.-.++.+++.
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv 309 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV 309 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee
Confidence 56899999999998876 34555555566678999999999999985 35566554433222332222222223333332
Q ss_pred ccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCchh
Q 002426 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178 (924)
Q Consensus 99 ~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (924)
.+. . ..+
T Consensus 310 ~C~-------------------------~------------------------------------------------~~~ 316 (477)
T KOG0332|consen 310 LCA-------------------------C------------------------------------------------RDD 316 (477)
T ss_pred ecc-------------------------c------------------------------------------------hhh
Confidence 111 0 011
Q ss_pred HHHHHHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 179 VIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 179 ~~~~l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.++.+..|.. -...++||||.|++.+.+++..|...| +-|+..||
T Consensus 317 K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G----------------------------------h~V~~l~G 362 (477)
T KOG0332|consen 317 KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG----------------------------------HQVSLLHG 362 (477)
T ss_pred HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC----------------------------------ceeEEeec
Confidence 2223333332 234689999999999999999987544 36899999
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEec--ceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS--LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~--~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
.|.-.+|..+...|++|+-|||++|+++|||||.+-+++||+- ..||+|+ -+...|+||+||+||.| ..|.+
T Consensus 363 ~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~----pD~etYlHRiGRtGRFG--kkG~a 436 (477)
T KOG0332|consen 363 DLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE----PDYETYLHRIGRTGRFG--KKGLA 436 (477)
T ss_pred cchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCC----CCHHHHHHHhccccccc--ccceE
Confidence 9999999999999999999999999999999999999999982 2334433 45789999999999999 89999
Q ss_pred EEEeCCCCCHH
Q 002426 336 VLVQTPYEGAE 346 (924)
Q Consensus 336 ill~~~~~~~~ 346 (924)
|-+.+....++
T Consensus 437 ~n~v~~~~s~~ 447 (477)
T KOG0332|consen 437 INLVDDKDSMN 447 (477)
T ss_pred EEeecccCcHH
Confidence 98887766554
No 40
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=7.7e-21 Score=207.85 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=169.2
Q ss_pred CCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHh-cccCCceEEecCCCCc--cc--ceE
Q 002426 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI-GQIHGKTELITSSRRP--VP--LTW 95 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL-~~~~~~~~vv~s~~Rp--vp--L~~ 95 (924)
+++++++|+||||.+.|.+|...+..||..||+..+.=+||||... +..+.. ...++++.|......- +| |..
T Consensus 155 ~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~--~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~ 232 (567)
T KOG0345|consen 155 FRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQ--EVEDLARAGLRNPVRVSVKEKSKSATPSSLAL 232 (567)
T ss_pred ccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhH--HHHHHHHhhccCceeeeecccccccCchhhcc
Confidence 5599999999999999999999999999999999999999999874 333322 1235665554443322 33 443
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|.... .
T Consensus 233 ~Y~v~~-------------------------a------------------------------------------------ 239 (567)
T KOG0345|consen 233 EYLVCE-------------------------A------------------------------------------------ 239 (567)
T ss_pred eeeEec-------------------------H------------------------------------------------
Confidence 332111 0
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
......++..|.......+|||..|...++.....+..+ .....|...
T Consensus 240 ~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~--------------------------------l~~~~i~~i 287 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL--------------------------------LKKREIFSI 287 (567)
T ss_pred HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH--------------------------------hCCCcEEEe
Confidence 001222344445566679999999999888777766522 012467889
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
||.|.+..|..+.+.|++-.-.|||||+++|+|||+|.++.||+ ++.|.+++.|.||+||+||.| ..|.+
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~FvHR~GRTaR~g--r~G~A 357 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSFVHRCGRTARAG--REGNA 357 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cCCCCChhHHHhhcchhhhcc--Cccce
Confidence 99999999999999999988899999999999999999999999 889999999999999999999 89999
Q ss_pred EEEeCCCCCHHHHHHHHhCCC-ccccccc
Q 002426 336 VLVQTPYEGAEECCKLLFAGV-EPLVSQF 363 (924)
Q Consensus 336 ill~~~~~~~~~~~~l~~~~~-~pL~S~~ 363 (924)
+++..|.+ ..|.+++.-.. .++++..
T Consensus 358 ivfl~p~E--~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 358 IVFLNPRE--EAYVEFLRIKGKVELERID 384 (567)
T ss_pred EEEecccH--HHHHHHHHhcCccchhhhc
Confidence 99888744 35666665553 3444433
No 41
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.86 E-value=3e-21 Score=212.59 Aligned_cols=218 Identities=19% Similarity=0.181 Sum_probs=157.5
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCCcccceEEec
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFS 98 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~~ 98 (924)
..++++++|+||||++.|.+|...++.|+..+|...|.++||||++. .++++.-.-. +.+.++-..+....+-
T Consensus 227 ~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~-~d~~~v~~~d~~~~~T----- 300 (543)
T KOG0342|consen 227 LFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALK-RDPVFVNVDDGGERET----- 300 (543)
T ss_pred hhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhc-CCceEeecCCCCCcch-----
Confidence 45577899999999999999999999999999999999999999994 4555543321 1222221111111000
Q ss_pred ccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCchh
Q 002426 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 178 (924)
Q Consensus 99 ~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (924)
...+...|+.. .....
T Consensus 301 ----------------he~l~Qgyvv~------------------------------------------------~~~~~ 316 (543)
T KOG0342|consen 301 ----------------HERLEQGYVVA------------------------------------------------PSDSR 316 (543)
T ss_pred ----------------hhcccceEEec------------------------------------------------cccch
Confidence 00000000000 00001
Q ss_pred HHHHHHHHHhCCC-CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 179 VIDTLWHLRSRDM-LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 179 ~~~~l~~l~~~~~-~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
+..++..|.+... ..+||||.|...+.-.+..|...++ .|-.+||
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl----------------------------------pv~eiHg 362 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL----------------------------------PVLEIHG 362 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC----------------------------------chhhhhc
Confidence 1222233333222 6899999999999888888876554 3444899
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEE
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vil 337 (924)
++.+..|..+...|++-.--+|+||++.|||+|+|+++.||. ++.|-.+.+|+||+||+||.| ..|.+++
T Consensus 363 k~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~YIHRvGRTaR~g--k~G~alL 432 (543)
T KOG0342|consen 363 KQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQYIHRVGRTAREG--KEGKALL 432 (543)
T ss_pred CCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eCCCCCHHHHHHHhccccccC--CCceEEE
Confidence 999999999999999999999999999999999999999999 889999999999999999988 8999999
Q ss_pred EeCCCCCHHHHHHHHh
Q 002426 338 VQTPYEGAEECCKLLF 353 (924)
Q Consensus 338 l~~~~~~~~~~~~l~~ 353 (924)
+..|.+. .+..++.
T Consensus 433 ~l~p~El--~Flr~LK 446 (543)
T KOG0342|consen 433 LLAPWEL--GFLRYLK 446 (543)
T ss_pred EeChhHH--HHHHHHh
Confidence 9888653 2444444
No 42
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=7.4e-21 Score=232.72 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=158.0
Q ss_pred CCCCCCccEEEEccccc-cCCCCchHHH-HHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHY-LSDISRGTVW-EEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~-l~D~~RG~v~-Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
+..|+++++|||||+|. +.+.+++..+ .++...++++.|+|+||||+++ +.|.++++. +.++....|..|+++
T Consensus 108 d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~-~~l~~~l~~----~~vI~~~gr~~pVe~ 182 (819)
T TIGR01970 108 DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG-ERLSSLLPD----APVVESEGRSFPVEI 182 (819)
T ss_pred CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH-HHHHHHcCC----CcEEEecCcceeeee
Confidence 45699999999999994 6666666543 4455567889999999999985 447777752 344555667777777
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|..... ...+
T Consensus 183 ~y~~~~~------------~~~~--------------------------------------------------------- 193 (819)
T TIGR01970 183 RYLPLRG------------DQRL--------------------------------------------------------- 193 (819)
T ss_pred EEeecch------------hhhH---------------------------------------------------------
Confidence 6642110 0000
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...+...+..+.....+.+|||++++.+++.+++.|...- . -...|..+
T Consensus 194 ~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~-~------------------------------~~~~v~pL 242 (819)
T TIGR01970 194 EDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL-D------------------------------SDVLICPL 242 (819)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc-C------------------------------CCcEEEEe
Confidence 0011122333333334689999999999999998886310 0 01257889
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc-e---ecCCCC------cccCCHHHHHHHhcccC
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL-S---KRTASG------RIQLTSNELFQMAGRAG 325 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~-~---k~dg~~------~~pls~~ey~Qm~GRAG 325 (924)
||+|++.+|..++..|++|..|||+||+++++|||+|.+++||++- . .||... ..++|..+|.||+||||
T Consensus 243 Hg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAG 322 (819)
T TIGR01970 243 YGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAG 322 (819)
T ss_pred cCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999999999999853 2 244322 35789999999999999
Q ss_pred CCCCCCccEEEEEeCC
Q 002426 326 RRGIDNRGHVVLVQTP 341 (924)
Q Consensus 326 R~G~D~~G~vill~~~ 341 (924)
|.+ .|.||-++++
T Consensus 323 R~~---~G~cyrL~t~ 335 (819)
T TIGR01970 323 RLE---PGVCYRLWSE 335 (819)
T ss_pred CCC---CCEEEEeCCH
Confidence 985 9999999875
No 43
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=209.10 Aligned_cols=220 Identities=22% Similarity=0.241 Sum_probs=165.7
Q ss_pred CCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEec----CCCCcccceE
Q 002426 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELIT----SSRRPVPLTW 95 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~----s~~RpvpL~~ 95 (924)
-.++.++|+||||+|.|.+|..+++.||..+|++.|.++||||-.+ ..+++..-- ..|.+|-+ ....|..|++
T Consensus 213 t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL--~dP~~vsvhe~a~~atP~~L~Q 290 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSL--KDPVYVSVHENAVAATPSNLQQ 290 (758)
T ss_pred CCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhc--CCCcEEEEeccccccChhhhhh
Confidence 4689999999999999999999999999999999999999999885 566665422 23333322 2334556766
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|+..+ +
T Consensus 291 ~y~~v~----l--------------------------------------------------------------------- 297 (758)
T KOG0343|consen 291 SYVIVP----L--------------------------------------------------------------------- 297 (758)
T ss_pred eEEEEe----h---------------------------------------------------------------------
Confidence 654221 0
Q ss_pred chhHHHHHHHH-HhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~l-~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.+.++.+... ..+-....|||+.|.+++.-+.+.+..+.. ...+-.
T Consensus 298 -~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrp--------------------------------g~~l~~ 344 (758)
T KOG0343|consen 298 -EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP--------------------------------GIPLLA 344 (758)
T ss_pred -hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCC--------------------------------CCceee
Confidence 0112222222 233345789999999998887776653321 113566
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||+|.+..|..|...|-+..--|||||+++|+|+|+|++++||. .+.|-.+..|+||+||++|.+ ..|.
T Consensus 345 L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tYIHRvGRtAR~~--~~G~ 414 (758)
T KOG0343|consen 345 LHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTYIHRVGRTARYK--ERGE 414 (758)
T ss_pred eccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ecCchhHHHHHHHhhhhhccc--CCCc
Confidence 899999999999999999999999999999999999999999999 888999999999999999988 8999
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCccc
Q 002426 335 VVLVQTPYEGAEECCKLLFAGVEPL 359 (924)
Q Consensus 335 vill~~~~~~~~~~~~l~~~~~~pL 359 (924)
++++..|.+.. .+.+.+....-|+
T Consensus 415 sll~L~psEeE-~~l~~Lq~k~I~i 438 (758)
T KOG0343|consen 415 SLLMLTPSEEE-AMLKKLQKKKIPI 438 (758)
T ss_pred eEEEEcchhHH-HHHHHHHHcCCCH
Confidence 99999887633 3444444443443
No 44
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=6.6e-21 Score=202.01 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=156.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC--ceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG--KTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~--~~~vv~s~~RpvpL~~ 95 (924)
+..+++++++|+|||+.|.+..+-..++-+..-+|...|.++|||||.+ .+.+..+..-. .++.... .-
T Consensus 148 ~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~-~~------ 218 (442)
T KOG0340|consen 148 SWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEV-ID------ 218 (442)
T ss_pred hhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhh--HHHHhhcCCcccccceEEec-cC------
Confidence 4678999999999999999999999999999999999999999999984 23332322100 0111111 00
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+......+...|+-.... .+
T Consensus 219 ---------------~vstvetL~q~yI~~~~~-----------------------------------vk---------- 238 (442)
T KOG0340|consen 219 ---------------GVSTVETLYQGYILVSID-----------------------------------VK---------- 238 (442)
T ss_pred ---------------CCCchhhhhhheeecchh-----------------------------------hh----------
Confidence 011111221122210000 00
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
....+..+....+.....++||+++.+.|+.++..|..+. -.++..
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le----------------------------------~r~~~l 284 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE----------------------------------VRVVSL 284 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc----------------------------------eeeeeh
Confidence 0123344555554456789999999999999888876443 368889
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
||-|++.+|...+..|+.+.+++|+||+++++|+|||.+..|++ ++.|-+|.+|+||+||++|+| ..|.+
T Consensus 285 Hs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~yiHRvGRtARAG--R~G~a 354 (442)
T KOG0340|consen 285 HSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HDIPRDPKDYIHRVGRTARAG--RKGMA 354 (442)
T ss_pred hhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cCCCCCHHHHHHhhcchhccc--CCcce
Confidence 99999999999999999999999999999999999999999999 889999999999999999999 88999
Q ss_pred EEEeCCC
Q 002426 336 VLVQTPY 342 (924)
Q Consensus 336 ill~~~~ 342 (924)
+.+.++.
T Consensus 355 iSivt~r 361 (442)
T KOG0340|consen 355 ISIVTQR 361 (442)
T ss_pred EEEechh
Confidence 9777753
No 45
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.8e-20 Score=201.00 Aligned_cols=203 Identities=18% Similarity=0.197 Sum_probs=151.3
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHH-HhcccCCceEEecCCCCccc---
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG-WIGQIHGKTELITSSRRPVP--- 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~-wL~~~~~~~~vv~s~~Rpvp--- 92 (924)
.-.|..|.|+|+||+|.|+|.+|.+.+..++.-..++.|+++.|||.|. ...++. ++ +.++.++..+---+.
T Consensus 362 ~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~---Kep~~v~vGsLdL~a~~s 438 (629)
T KOG0336|consen 362 VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL---KEPMIVYVGSLDLVAVKS 438 (629)
T ss_pred eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh---hCceEEEecccceeeeee
Confidence 3458899999999999999999999999999999999999999999996 466664 33 334443333211111
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
+.+.++. ..
T Consensus 439 VkQ~i~v--------~~--------------------------------------------------------------- 447 (629)
T KOG0336|consen 439 VKQNIIV--------TT--------------------------------------------------------------- 447 (629)
T ss_pred eeeeEEe--------cc---------------------------------------------------------------
Confidence 1111100 00
Q ss_pred ccCchhHHHHHHHHHh--CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc
Q 002426 173 RSQVPQVIDTLWHLRS--RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250 (924)
Q Consensus 173 ~~~~~~~~~~l~~l~~--~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~ 250 (924)
......++..+.+ ....++||||.++..++.+...+.-.++.+
T Consensus 448 ---d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~-------------------------------- 492 (629)
T KOG0336|consen 448 ---DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS-------------------------------- 492 (629)
T ss_pred ---cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccch--------------------------------
Confidence 0011122232221 233579999999998888766655334322
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
-.+||+-.+.+|+...+.|+.|.+++||||+.+++|+|+|.+|+|++ ++.|.+..+|+||+||+||+|
T Consensus 493 --q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeYVHRvGrtGRaG-- 560 (629)
T KOG0336|consen 493 --QSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEYVHRVGRTGRAG-- 560 (629)
T ss_pred --hhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHHHHHHHhcccccCC--
Confidence 23899999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CccEEEEEeCC
Q 002426 331 NRGHVVLVQTP 341 (924)
Q Consensus 331 ~~G~vill~~~ 341 (924)
..|.++.+.+.
T Consensus 561 r~G~sis~lt~ 571 (629)
T KOG0336|consen 561 RTGTSISFLTR 571 (629)
T ss_pred CCcceEEEEeh
Confidence 78998865543
No 46
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.83 E-value=6.9e-20 Score=224.69 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=155.1
Q ss_pred CCCCCCccEEEEccccc-cCCCCch-HHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHY-LSDISRG-TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~-l~D~~RG-~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
+..|+++++|||||+|. ..+.+.. ....+++..++++.|+|+||||+++ +.|++++.. +.++....|..|+++
T Consensus 111 d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~-~~l~~~~~~----~~~I~~~gr~~pV~~ 185 (812)
T PRK11664 111 DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN-DRLQQLLPD----APVIVSEGRSFPVER 185 (812)
T ss_pred CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH-HHHHHhcCC----CCEEEecCccccceE
Confidence 45789999999999996 3332221 1234455668889999999999975 467777642 234455566777777
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|..... ...+
T Consensus 186 ~y~~~~~------------~~~~--------------------------------------------------------- 196 (812)
T PRK11664 186 RYQPLPA------------HQRF--------------------------------------------------------- 196 (812)
T ss_pred EeccCch------------hhhH---------------------------------------------------------
Confidence 6642110 0000
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...+...+..+.....+.+|||++++.+++.+++.|..... -...|..+
T Consensus 197 ~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-------------------------------~~~~v~~L 245 (812)
T PRK11664 197 DEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-------------------------------SDVLLCPL 245 (812)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc-------------------------------CCceEEEe
Confidence 00112223333333456899999999999999998863100 01147889
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc-e---ecCCCC------cccCCHHHHHHHhcccC
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL-S---KRTASG------RIQLTSNELFQMAGRAG 325 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~-~---k~dg~~------~~pls~~ey~Qm~GRAG 325 (924)
||+|++.+|..++..|++|..|||+||+++++|||+|.+++||++- . .||... ..++|..+|.||+||||
T Consensus 246 hg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 246 YGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred eCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 9999999999999999999999999999999999999999999852 2 255332 25788999999999999
Q ss_pred CCCCCCccEEEEEeCC
Q 002426 326 RRGIDNRGHVVLVQTP 341 (924)
Q Consensus 326 R~G~D~~G~vill~~~ 341 (924)
|.+ .|.||.++++
T Consensus 326 R~~---~G~cyrL~t~ 338 (812)
T PRK11664 326 RLE---PGICLHLYSK 338 (812)
T ss_pred CCC---CcEEEEecCH
Confidence 985 9999999875
No 47
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.8e-20 Score=207.42 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=147.9
Q ss_pred CCCCCCccEEEEccccccCC-CCchHHHHHHHHhCC----CCccEEEEcccCCC-HHHHH-HHhcccCCceEEecCCCCc
Q 002426 18 ESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCP----KEVQIICLSATVAN-ADELA-GWIGQIHGKTELITSSRRP 90 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp----~~~qiV~LSATi~N-~~e~a-~wL~~~~~~~~vv~s~~Rp 90 (924)
.-.|++++++|+||+|.|.| .+|++.+..++.++. ...|.++||||.|- ...++ .++.....-..|.....-+
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 45689999999999999999 999999999998774 37899999999993 22222 2222100000000000001
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
..+.+-+.. +++.
T Consensus 301 ~ni~q~i~~-------V~~~------------------------------------------------------------ 313 (482)
T KOG0335|consen 301 ENITQKILF-------VNEM------------------------------------------------------------ 313 (482)
T ss_pred ccceeEeee-------ecch------------------------------------------------------------
Confidence 111111100 0000
Q ss_pred hhccCchhHHHHHHHHHhC------CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhH
Q 002426 171 IRRSQVPQVIDTLWHLRSR------DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA 244 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~------~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~ 244 (924)
.-.+.+++++...... ....++|||.+++.|+.++..|...++.
T Consensus 314 ---~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~--------------------------- 363 (482)
T KOG0335|consen 314 ---EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP--------------------------- 363 (482)
T ss_pred ---hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC---------------------------
Confidence 0011122222211100 1126899999999999999999866542
Q ss_pred HhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhccc
Q 002426 245 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 324 (924)
Q Consensus 245 ~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRA 324 (924)
.-..||..++.+|+....+|+.|.+.|||||+++|+|+|+|.+++||+ |+.|-+..+|+||+||+
T Consensus 364 -------~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 364 -------AKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDYVHRIGRT 428 (482)
T ss_pred -------ceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhHHHhcccc
Confidence 234899999999999999999999999999999999999999999999 88999999999999999
Q ss_pred CCCCCCCccEEEEEeC
Q 002426 325 GRRGIDNRGHVVLVQT 340 (924)
Q Consensus 325 GR~G~D~~G~vill~~ 340 (924)
||.| ..|.++.+.+
T Consensus 429 GR~G--n~G~atsf~n 442 (482)
T KOG0335|consen 429 GRVG--NGGRATSFFN 442 (482)
T ss_pred ccCC--CCceeEEEec
Confidence 9999 8999998876
No 48
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.83 E-value=1.5e-19 Score=216.44 Aligned_cols=220 Identities=18% Similarity=0.239 Sum_probs=145.9
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhC-CCCccEEEEcccCC-CHHHHHHHhcccCCceEEecCCCCc-ccceE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVA-NADELAGWIGQIHGKTELITSSRRP-VPLTW 95 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-p~~~qiV~LSATi~-N~~e~a~wL~~~~~~~~vv~s~~Rp-vpL~~ 95 (924)
..|+++++|||||||.+.+. |.....++..+ +...|+++||||++ +.+.|..|+.. +.. +....++ .|+++
T Consensus 287 ~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~---p~~-I~I~grt~~pV~~ 360 (675)
T PHA02653 287 NKLFDYGTVIIDEVHEHDQI--GDIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPN---PAF-VHIPGGTLFPISE 360 (675)
T ss_pred cccccCCEEEccccccCccc--hhHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcC---CcE-EEeCCCcCCCeEE
Confidence 45889999999999999754 44554444444 33459999999998 46778888752 222 2223343 67777
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
++..... +. .....+.. ..
T Consensus 361 ~yi~~~~-----~~-------~~~~~y~~-------------------------------------------------~~ 379 (675)
T PHA02653 361 VYVKNKY-----NP-------KNKRAYIE-------------------------------------------------EE 379 (675)
T ss_pred EEeecCc-----cc-------ccchhhhH-------------------------------------------------HH
Confidence 6643210 00 00000000 00
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...+...+.........++|||++++.+|+.+++.|.... + ...+..+
T Consensus 380 k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------~-----------~~~v~~L 427 (675)
T PHA02653 380 KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------P-----------IYDFYII 427 (675)
T ss_pred HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------C-----------CceEEec
Confidence 0112222322222234589999999999999999886321 0 0147789
Q ss_pred cCCCCHHHHHHHHHHh-hCCCeeEEEEccccccccCCCCceEEEecceec----CCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 256 HAGCLPIWKSFIEELF-QRGLVKVVFATETLAAGINMPARTAVLSSLSKR----TASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF-~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~----dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
||+|++. +.+...| +.|..+||+||+.+++|||+|.+++||+....+ .+....++|..+|+||+|||||.+
T Consensus 428 HG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~-- 503 (675)
T PHA02653 428 HGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS-- 503 (675)
T ss_pred cCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC--
Confidence 9999985 3444455 789999999999999999999999999863111 111246789999999999999995
Q ss_pred CccEEEEEeCCC
Q 002426 331 NRGHVVLVQTPY 342 (924)
Q Consensus 331 ~~G~vill~~~~ 342 (924)
.|.|+.++++.
T Consensus 504 -~G~c~rLyt~~ 514 (675)
T PHA02653 504 -PGTYVYFYDLD 514 (675)
T ss_pred -CCeEEEEECHH
Confidence 89999998764
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=2.1e-19 Score=222.25 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=142.1
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
.-.+.++++||+||+|.+ |+...+.+..++.++|+++||||. .++.+...+........+........|+.+++
T Consensus 568 ~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATp-iprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v 641 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATP-IPRTLHMSMSGIRDLSIIATPPEDRLPVRTFV 641 (926)
T ss_pred CCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCC-CHHHHHHHHhcCCCcEEEecCCCCccceEEEE
Confidence 456889999999999985 555566777788899999999994 45666655543333222221111112333332
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
.... . .
T Consensus 642 ~~~~--------------~------------------------------------------------------------~ 647 (926)
T TIGR00580 642 MEYD--------------P------------------------------------------------------------E 647 (926)
T ss_pred EecC--------------H------------------------------------------------------------H
Confidence 1100 0 0
Q ss_pred hHHH-HHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 178 QVID-TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 178 ~~~~-~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
.+.. +...+. ...+++|||+++..|+.+++.|...- + ...|+.+|
T Consensus 648 ~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~---------------------p-----------~~~v~~lH 693 (926)
T TIGR00580 648 LVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELV---------------------P-----------EARIAIAH 693 (926)
T ss_pred HHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhC---------------------C-----------CCeEEEec
Confidence 0011 112222 23589999999999999888876310 0 12689999
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcc-cCCHHHHHHHhcccCCCCCCCccEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI-QLTSNELFQMAGRAGRRGIDNRGHV 335 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~-pls~~ey~Qm~GRAGR~G~D~~G~v 335 (924)
|+|++.+|+.++..|++|.++|||||+++++|||+|.+++||. ++. .....+|+||+||+||.| ..|.|
T Consensus 694 G~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~gls~l~Qr~GRvGR~g--~~g~a 763 (926)
T TIGR00580 694 GQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERADKFGLAQLYQLRGRVGRSK--KKAYA 763 (926)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCCCCCHHHHHHHhcCCCCCC--CCeEE
Confidence 9999999999999999999999999999999999999988776 222 135678999999999998 79999
Q ss_pred EEEeCCC
Q 002426 336 VLVQTPY 342 (924)
Q Consensus 336 ill~~~~ 342 (924)
+++..+.
T Consensus 764 ill~~~~ 770 (926)
T TIGR00580 764 YLLYPHQ 770 (926)
T ss_pred EEEECCc
Confidence 9998653
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.7e-19 Score=205.44 Aligned_cols=112 Identities=22% Similarity=0.365 Sum_probs=103.6
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
.....+.||||.||+.||.+|+.|...++ .++++||||...+|+.+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~----------------------------------~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGI----------------------------------SAGAYHAGLSNEERERV 272 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCC----------------------------------ceEEecCCCCHHHHHHH
Confidence 44556899999999999999999986554 57889999999999999
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
++.|..+.++|+|||..|.||||-|.+..||| ++.|.++..|.|=+|||||.| ....|++++++.+
T Consensus 273 q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~lP~s~EsYyQE~GRAGRDG--~~a~aill~~~~D 338 (590)
T COG0514 273 QQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDLPGSIESYYQETGRAGRDG--LPAEAILLYSPED 338 (590)
T ss_pred HHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecCCCCHHHHHHHHhhccCCC--CcceEEEeecccc
Confidence 99999999999999999999999999999999 899999999999999999999 7899999998754
No 51
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.81 E-value=1.2e-19 Score=193.46 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=153.8
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEecc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFST 99 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~~~ 99 (924)
.|+-++|+.+||+|+|.|.+|...+..+..++....|.++||||+|. .+..|-..- -..||.++.--.+
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~--KIQ~FAkSA---------LVKPvtvNVGRAG 391 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPK--KIQNFAKSA---------LVKPVTVNVGRAG 391 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccH--HHHHHHHhh---------cccceEEeccccc
Confidence 47789999999999999999999999999999999999999999993 333322110 0122222210000
Q ss_pred cccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCchhH
Q 002426 100 KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179 (924)
Q Consensus 100 ~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (924)
.. ...++. .+.|+. +...+
T Consensus 392 AA-sldViQ----------evEyVk--------------------------------------------------qEaKi 410 (610)
T KOG0341|consen 392 AA-SLDVIQ----------EVEYVK--------------------------------------------------QEAKI 410 (610)
T ss_pred cc-chhHHH----------HHHHHH--------------------------------------------------hhhhh
Confidence 00 000000 011210 11234
Q ss_pred HHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCC
Q 002426 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 259 (924)
Q Consensus 180 ~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl 259 (924)
+-++.+|.+.. .|++|||-.+.+++.+.++|.-.+. -....|||-
T Consensus 411 VylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGV----------------------------------EavaIHGGK 455 (610)
T KOG0341|consen 411 VYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGV----------------------------------EAVAIHGGK 455 (610)
T ss_pred hhHHHHhccCC-CceEEEeccccChHHHHHHHHHccc----------------------------------eeEEeecCc
Confidence 44555565544 5999999999999999999863332 245689999
Q ss_pred CHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 260 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 260 ~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
.+++|....++|+.|+-+|||||++++-|+|+|++.+||+ |+.|-....|+||+||+||.| ..|.+..+.
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENYVHRIGRTGRsg--~~GiATTfI 525 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENYVHRIGRTGRSG--KTGIATTFI 525 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHHHHHhcccCCCC--Ccceeeeee
Confidence 9999999999999999999999999999999999999999 889999999999999999999 899998777
Q ss_pred CCC
Q 002426 340 TPY 342 (924)
Q Consensus 340 ~~~ 342 (924)
+..
T Consensus 526 NK~ 528 (610)
T KOG0341|consen 526 NKN 528 (610)
T ss_pred ccc
Confidence 653
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=8e-19 Score=221.41 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=91.6
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
.+++|||+++..|+.+++.|.... | ..+|+.+||+|++.+|+.++..|
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~---------------------p-----------~~~v~~lHG~m~q~eRe~im~~F 857 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELV---------------------P-----------EARIAIGHGQMRERELERVMNDF 857 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC---------------------C-----------CCcEEEEeCCCCHHHHHHHHHHH
Confidence 589999999999999988886320 0 12789999999999999999999
Q ss_pred hCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 272 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 272 ~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
++|.++|||||+++++|||+|.+++||.. ....++..+|+||+||+||.| ..|.|+++..+
T Consensus 858 r~Gk~~VLVaTdIierGIDIP~v~~VIi~-------~ad~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~ 918 (1147)
T PRK10689 858 HHQRFNVLVCTTIIETGIDIPTANTIIIE-------RADHFGLAQLHQLRGRVGRSH--HQAYAWLLTPH 918 (1147)
T ss_pred HhcCCCEEEECchhhcccccccCCEEEEe-------cCCCCCHHHHHHHhhccCCCC--CceEEEEEeCC
Confidence 99999999999999999999999988741 011234678999999999999 79999988754
No 53
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.1e-19 Score=201.55 Aligned_cols=178 Identities=18% Similarity=0.153 Sum_probs=134.8
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
-.+.+||||||...+..++-+|..+++.. -.+|+.|.+..|...++
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p----------------------------------~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPP----------------------------------LPLHASMIQKQRLKNLE 507 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCC----------------------------------chhhHHHHHHHHHHhHH
Confidence 45689999999999989999888766532 24899999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHH
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~ 349 (924)
.|++..-.||+||+++|+|+|||.+.+||+ |++|-+..-|+||+||++|++ ..|..+++++|.+ ...+.
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e-~~~~~ 576 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQE-VGPLK 576 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCccceeEeccccccccc--CCCeEEEEeChHH-hHHHH
Confidence 999999999999999999999999999999 999999999999999999999 8999999999876 33343
Q ss_pred HH----HhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHH
Q 002426 350 KL----LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425 (924)
Q Consensus 350 ~l----~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l 425 (924)
++ -.....|| |.. ..-+++.+. ++| .-|+++.+..|..++......+.+...
T Consensus 577 KL~ktL~k~~dlpi---fPv-~~~~m~~lk-eRv-------------------rLA~ei~~~e~k~~~v~~~~sWlkkaA 632 (731)
T KOG0347|consen 577 KLCKTLKKKEDLPI---FPV-ETDIMDALK-ERV-------------------RLAREIDKLEIKSKRVRKEESWLKKAA 632 (731)
T ss_pred HHHHHHhhccCCCc---eec-cHHHHHHHH-HHH-------------------HHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 32 22223343 322 334555554 111 124566666677777766667776666
Q ss_pred HHHHHHHHHHH
Q 002426 426 CKIQKETDVLT 436 (924)
Q Consensus 426 ~~~~~~~~~l~ 436 (924)
.++..+++.-+
T Consensus 633 ~el~id~d~d~ 643 (731)
T KOG0347|consen 633 DELGIDVDEDE 643 (731)
T ss_pred HHhCCcccccc
Confidence 66655544443
No 54
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.80 E-value=1.5e-18 Score=216.54 Aligned_cols=218 Identities=17% Similarity=0.217 Sum_probs=150.6
Q ss_pred CCCCCCccEEEEcccc-ccCCCCchHH-HHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVH-YLSDISRGTV-WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H-~l~D~~RG~v-~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
+..|+++++||||||| ++.+.++-.. +..++.. .++.|+|++|||+ +++.|+++++. .+ ++.-+.|..|+++
T Consensus 181 d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATi-d~e~fs~~F~~--ap--vI~V~Gr~~pVei 254 (1294)
T PRK11131 181 DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATI-DPERFSRHFNN--AP--IIEVSGRTYPVEV 254 (1294)
T ss_pred CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeCCC-CHHHHHHHcCC--CC--EEEEcCccccceE
Confidence 4669999999999999 4666554321 2222211 2468999999999 47888888753 22 2333345566665
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|.... +. ... . +. ..
T Consensus 255 ~y~p~~------~~-~~~----~----------------------------------------------~~-------d~ 270 (1294)
T PRK11131 255 RYRPIV------EE-ADD----T----------------------------------------------ER-------DQ 270 (1294)
T ss_pred EEeecc------cc-cch----h----------------------------------------------hH-------HH
Confidence 553211 00 000 0 00 00
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...++..+..+.....+.+|||++++.+|+.+++.|...++.. ..|..+
T Consensus 271 l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~-------------------------------~~VlpL 319 (1294)
T PRK11131 271 LQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH-------------------------------TEILPL 319 (1294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc-------------------------------ceEeec
Confidence 1123344444544556789999999999999999997544211 136789
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------cccCCHHHHHHHhcccC
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------RIQLTSNELFQMAGRAG 325 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------~~pls~~ey~Qm~GRAG 325 (924)
||+|++.+|..++.. .|..+||+||+++++|||+|.+++||+.. +.||... ..|+|..+|.||+||||
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 397 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccC
Confidence 999999999999875 58899999999999999999999999852 3355432 23577799999999999
Q ss_pred CCCCCCccEEEEEeCC
Q 002426 326 RRGIDNRGHVVLVQTP 341 (924)
Q Consensus 326 R~G~D~~G~vill~~~ 341 (924)
|.+ .|.||.++++
T Consensus 398 R~~---~G~c~rLyte 410 (1294)
T PRK11131 398 RVS---EGICIRLYSE 410 (1294)
T ss_pred CCC---CcEEEEeCCH
Confidence 996 8999988865
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=1.6e-18 Score=196.78 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=87.0
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH---
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI--- 267 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V--- 267 (924)
..++||||+|++.|+.+++.|...+. ...+..+||++++.+|..+
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~--------------------------------~~~~~~~h~~~~~~~r~~~~~~ 269 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAP--------------------------------EEEIMLLHSRFTEKDRAKKEAE 269 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcC--------------------------------CCeEEEEECCCCHHHHHHHHHH
Confidence 46899999999999999999864321 1258899999999999764
Q ss_pred -HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC--ccEEEEEeCC
Q 002426 268 -EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN--RGHVVLVQTP 341 (924)
Q Consensus 268 -E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~--~G~vill~~~ 341 (924)
...|++|..+|||||+++++|||+|.. +||. + +.++..|+||+||+||.|... .|.++++...
T Consensus 270 ~~~~f~~~~~~ilvaT~~~~~GiDi~~~-~vi~--------~--~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 270 LLEEMKKNEKFVIVATQVIEASLDISAD-VMIT--------E--LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHhcCCCCeEEEECcchhceeccCCC-EEEE--------c--CCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 678999999999999999999999854 4554 2 244789999999999998642 3578777654
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.80 E-value=3.6e-18 Score=208.15 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=73.6
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc-CCHHHHHHHhcccCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRG 328 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p-ls~~ey~Qm~GRAGR~G 328 (924)
..|+++||+|++.+|+.++..|++|.++|||||+++++|||+|.+++||. ++.| ...+.|+||.||+||.|
T Consensus 506 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~gls~lhQ~~GRvGR~g 577 (681)
T PRK10917 506 LRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERFGLAQLHQLRGRVGRGA 577 (681)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCCCHHHHHHHhhcccCCC
Confidence 37999999999999999999999999999999999999999999999887 3333 35788999999999998
Q ss_pred CCCccEEEEEeCC
Q 002426 329 IDNRGHVVLVQTP 341 (924)
Q Consensus 329 ~D~~G~vill~~~ 341 (924)
..|.|+++.+.
T Consensus 578 --~~g~~ill~~~ 588 (681)
T PRK10917 578 --AQSYCVLLYKD 588 (681)
T ss_pred --CceEEEEEECC
Confidence 78999999853
No 57
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=6e-19 Score=195.24 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=105.7
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhh-hccceEEEcCCCCHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~-L~~GVa~hH~gl~~~~R~~VE 268 (924)
....+|||..+...++--...+...-... . +-....| +.+.+..+ +...+.-+||+|.+++|..++
T Consensus 424 ~~qk~iVF~S~~d~VeFHy~lf~~~l~~~-~----------e~~s~~~--~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 424 EKQKMIVFFSCSDSVEFHYSLFSEALLSH-L----------EGSSGAP--DSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred hhceeEEEEechhHHHHHHHHHHhhhhcc-c----------ccccCCc--ccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 33478999999888887776665221110 0 0000111 11122232 233577899999999999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHH
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 348 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~ 348 (924)
..|+...-.||+||+++|+|+|+|.++.||. |+.|.++.+|+||+||++|.| ..|.++++..|.+. +|
T Consensus 491 ~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~s~adylHRvGRTARaG--~kG~alLfL~P~Ea--ey 558 (708)
T KOG0348|consen 491 QEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPFSTADYLHRVGRTARAG--EKGEALLFLLPSEA--EY 558 (708)
T ss_pred HhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCCCHHHHHHHhhhhhhcc--CCCceEEEecccHH--HH
Confidence 9999988889999999999999999999999 889999999999999999999 89999999888652 35
Q ss_pred HHHHhCC
Q 002426 349 CKLLFAG 355 (924)
Q Consensus 349 ~~l~~~~ 355 (924)
..++...
T Consensus 559 ~~~l~~~ 565 (708)
T KOG0348|consen 559 VNYLKKH 565 (708)
T ss_pred HHHHHhh
Confidence 5554443
No 58
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.8e-19 Score=198.92 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=152.1
Q ss_pred CCCCCccEEEEccccccCCC-CchHHHHHHHHhC-CCCccEEEEcccCCCHHHHHHHhcccCC-ceEEecCCCCcccceE
Q 002426 19 SGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTW 95 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~-~RG~v~Eeii~~l-p~~~qiV~LSATi~N~~e~a~wL~~~~~-~~~vv~s~~RpvpL~~ 95 (924)
..++.|.|+|+||+|++.++ .+-.+...++..| .+++++=+||||++ .++.+|...+.. ...+++.. ++..
T Consensus 284 idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~-~~sa--- 357 (593)
T KOG0344|consen 284 IDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGL-RNSA--- 357 (593)
T ss_pred chhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEec-chhH---
Confidence 46899999999999999988 6666777777766 46788899999988 777788765432 22222221 1100
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
...++.+-.+.. +.
T Consensus 358 --------~~~V~QelvF~g----------------------------------------------------------se 371 (593)
T KOG0344|consen 358 --------NETVDQELVFCG----------------------------------------------------------SE 371 (593)
T ss_pred --------hhhhhhhheeee----------------------------------------------------------cc
Confidence 001111000000 00
Q ss_pred chhHHHHHHHHHhC-CCCCeEEEEcChHhHHHHHHHhh-hCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 176 VPQVIDTLWHLRSR-DMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 176 ~~~~~~~l~~l~~~-~~~p~IVF~~Sr~~ce~~a~~L~-~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
...++. ++.+... -..|++||+.|...|..+...|. .-++ .|+
T Consensus 372 ~~K~lA-~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i----------------------------------~v~ 416 (593)
T KOG0344|consen 372 KGKLLA-LRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNI----------------------------------NVD 416 (593)
T ss_pred hhHHHH-HHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCc----------------------------------cee
Confidence 001121 2333322 23589999999999999888873 1111 588
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
+.||..++.+|+.+.+.|+.|.|.||+||+.+++|+|+-.++.||+ ++.|-+...|+||+||+||+| ..|
T Consensus 417 vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s~~syihrIGRtgRag--~~g 486 (593)
T KOG0344|consen 417 VIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQSDLSYIHRIGRTGRAG--RSG 486 (593)
T ss_pred eEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCCCchhHHHHHHhhccCCCC--CCc
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999 899
Q ss_pred EEEEEeCC
Q 002426 334 HVVLVQTP 341 (924)
Q Consensus 334 ~vill~~~ 341 (924)
++|.+++.
T Consensus 487 ~Aitfytd 494 (593)
T KOG0344|consen 487 KAITFYTD 494 (593)
T ss_pred ceEEEecc
Confidence 99999876
No 59
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.1e-18 Score=187.99 Aligned_cols=203 Identities=21% Similarity=0.266 Sum_probs=155.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEe-cCCCCc-ccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELI-TSSRRP-VPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv-~s~~Rp-vpL~ 94 (924)
.-..+.++++|+||++.|...++-..++.+..++|+++|++++|||+|. ..++++-+.. .|+.+- ..+.-. --+.
T Consensus 164 ~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~--~pv~i~vkk~~ltl~gik 241 (397)
T KOG0327|consen 164 SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMR--EPVRILVKKDELTLEGIK 241 (397)
T ss_pred cccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhcc--CceEEEecchhhhhhhee
Confidence 4457789999999999999999999999999999999999999999995 3445442221 111111 011000 0000
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
|+|... .
T Consensus 242 q~~i~v---------------------------------------------------------------~---------- 248 (397)
T KOG0327|consen 242 QFYINV---------------------------------------------------------------E---------- 248 (397)
T ss_pred eeeeec---------------------------------------------------------------c----------
Confidence 111000 0
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.+..+.++..+.+ ...+++|||||++.++.+...|...++ .+.+
T Consensus 249 -k~~k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~----------------------------------~~s~ 292 (397)
T KOG0327|consen 249 -KEEKLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGF----------------------------------TVSA 292 (397)
T ss_pred -ccccccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCc----------------------------------eEEE
Confidence 0012344555555 667899999999999999998865443 5677
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
.|+.|.+..|..+...|+.|..+||+.|+.+|+|+|+-..+.||+ ++.|-....|+||+||+||.| ..|.
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------ydlP~~~~~yihR~gr~gr~g--rkg~ 362 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLPARKENYIHRIGRAGRFG--RKGV 362 (397)
T ss_pred eecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------eccccchhhhhhhcccccccC--CCce
Confidence 999999999999999999999999999999999999999999999 889999999999999999999 8999
Q ss_pred EEEEeCC
Q 002426 335 VVLVQTP 341 (924)
Q Consensus 335 vill~~~ 341 (924)
++.++..
T Consensus 363 ~in~v~~ 369 (397)
T KOG0327|consen 363 AINFVTE 369 (397)
T ss_pred eeeeehH
Confidence 9987765
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.79 E-value=3.3e-18 Score=207.18 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=73.3
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc-CCHHHHHHHhcccCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRG 328 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p-ls~~ey~Qm~GRAGR~G 328 (924)
..|+++||+|++.+|+.+++.|++|.++|||||+++++|||+|.+++||. ++.+ .....|+||+|||||.|
T Consensus 483 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 483 YNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcCCHHHHHHHhhhcccCC
Confidence 46999999999999999999999999999999999999999999998886 2222 35789999999999998
Q ss_pred CCCccEEEEEeCC
Q 002426 329 IDNRGHVVLVQTP 341 (924)
Q Consensus 329 ~D~~G~vill~~~ 341 (924)
..|.|+++..+
T Consensus 555 --~~g~~il~~~~ 565 (630)
T TIGR00643 555 --HQSYCLLVYKN 565 (630)
T ss_pred --CCcEEEEEECC
Confidence 78999999843
No 61
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.77 E-value=3.6e-18 Score=213.85 Aligned_cols=218 Identities=18% Similarity=0.195 Sum_probs=152.1
Q ss_pred CCCCCCccEEEEcccc-ccCCCCchHH-HHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVH-YLSDISRGTV-WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H-~l~D~~RG~v-~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
+..|+++++|||||+| ++.+.++.-. +..++.. .++.|+|+||||++ ++.|+++++. +.++....|..|+..
T Consensus 174 d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld-~~~fa~~F~~----apvI~V~Gr~~PVev 247 (1283)
T TIGR01967 174 DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID-PERFSRHFNN----APIIEVSGRTYPVEV 247 (1283)
T ss_pred CcccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC-HHHHHHHhcC----CCEEEECCCccccee
Confidence 5679999999999999 4766555443 3444333 35789999999995 7889998863 223444456666665
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|..... .... ... ..
T Consensus 248 ~Y~~~~~------~~~~---------------------------------------------------~~~-------~~ 263 (1283)
T TIGR01967 248 RYRPLVE------EQED---------------------------------------------------DDL-------DQ 263 (1283)
T ss_pred EEecccc------cccc---------------------------------------------------hhh-------hH
Confidence 5432110 0000 000 00
Q ss_pred chhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 176 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 176 ~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
...+...+..+.....+.+|||++++.+++.+++.|...++.+ ..|..+
T Consensus 264 ~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~-------------------------------~~VlpL 312 (1283)
T TIGR01967 264 LEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRH-------------------------------TEILPL 312 (1283)
T ss_pred HHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCC-------------------------------cEEEec
Confidence 1123444555544455789999999999999999887432100 147789
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------cccCCHHHHHHHhcccC
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------RIQLTSNELFQMAGRAG 325 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------~~pls~~ey~Qm~GRAG 325 (924)
||+|++.+|..++..+ +..|||+||++++.||++|.+++||++. ..||... ..++|..+|.||+||||
T Consensus 313 hg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 313 YARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 9999999999985543 3479999999999999999999999853 3354432 24678899999999999
Q ss_pred CCCCCCccEEEEEeCC
Q 002426 326 RRGIDNRGHVVLVQTP 341 (924)
Q Consensus 326 R~G~D~~G~vill~~~ 341 (924)
|.| .|.||-+++.
T Consensus 391 R~~---~G~cyRLyte 403 (1283)
T TIGR01967 391 RVA---PGICIRLYSE 403 (1283)
T ss_pred CCC---CceEEEecCH
Confidence 998 9999988864
No 62
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.77 E-value=2.5e-18 Score=193.35 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=158.0
Q ss_pred CCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc-CCceEEecCCCCcc---cce
Q 002426 20 GLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSSRRPV---PLT 94 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s~~Rpv---pL~ 94 (924)
....|+++|+||+|.|.| .++-..+-.+|..||...|++++|||-| +-+++.|.+. +.|. +|.-+.+.+ .+.
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp--~nLdn~Lsk~mrdp~-lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYP--RNLDNLLSKFMRDPA-LVRFNADDVQLFGIK 240 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCc--hhHHHHHHHHhcccc-eeecccCCceeechh
Confidence 367899999999999998 6788888888999999999999999998 3333334332 2233 333232322 234
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+|+...... +.. . +.
T Consensus 241 Qyv~~~~s~-----------nns--v----------------------------------------------ee------ 255 (980)
T KOG4284|consen 241 QYVVAKCSP-----------NNS--V----------------------------------------------EE------ 255 (980)
T ss_pred heeeeccCC-----------cch--H----------------------------------------------HH------
Confidence 444321100 000 0 00
Q ss_pred CchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 175 QVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 175 ~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
.......+..+. .-.+.++||||.+...|+.++.+|...|+ -+-
T Consensus 256 -mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~----------------------------------d~~ 300 (980)
T KOG4284|consen 256 -MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGL----------------------------------DVT 300 (980)
T ss_pred -HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC----------------------------------CeE
Confidence 001122222222 22456899999999999999999987775 356
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
+..|.|.+.+|..+...++.-.++|||+|+..|+|||-|.++.||+ -+.|.+-..|.||+|||||.| ..|
T Consensus 301 ~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD~p~d~eTY~HRIGRAgRFG--~~G 370 (980)
T KOG4284|consen 301 FISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------IDAPADEETYFHRIGRAGRFG--AHG 370 (980)
T ss_pred EeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cCCCcchHHHHHHhhhccccc--ccc
Confidence 7889999999999999999999999999999999999999999999 789999999999999999999 899
Q ss_pred EEEEEeCCCCCH
Q 002426 334 HVVLVQTPYEGA 345 (924)
Q Consensus 334 ~vill~~~~~~~ 345 (924)
.+|.++....+.
T Consensus 371 ~aVT~~~~~~e~ 382 (980)
T KOG4284|consen 371 AAVTLLEDEREL 382 (980)
T ss_pred eeEEEeccchhh
Confidence 999777665543
No 63
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=7.9e-18 Score=182.85 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=155.9
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCC-Cc--ccce
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSR-RP--VPLT 94 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~-Rp--vpL~ 94 (924)
..++.++++|+||||.|..-++...+..+..+||+..|.++||||+++ ...+...+. ++|+.+-.++. -| -.|.
T Consensus 166 ~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l--~nPviLkl~e~el~~~dqL~ 243 (569)
T KOG0346|consen 166 EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFL--HNPVILKLTEGELPNPDQLT 243 (569)
T ss_pred hhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhc--cCCeEEEeccccCCCcccce
Confidence 568899999999999999767777788889999999999999999984 455555554 45555443332 22 2355
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
||...... ++++
T Consensus 244 Qy~v~cse------------~DKf-------------------------------------------------------- 255 (569)
T KOG0346|consen 244 QYQVKCSE------------EDKF-------------------------------------------------------- 255 (569)
T ss_pred EEEEEecc------------chhH--------------------------------------------------------
Confidence 55432210 0000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
..++.+++.-.-+ +..|||+||...|..+--.|...|+ .-++
T Consensus 256 --lllyallKL~LI~--gKsliFVNtIdr~YrLkLfLeqFGi----------------------------------ksci 297 (569)
T KOG0346|consen 256 --LLLYALLKLRLIR--GKSLIFVNTIDRCYRLKLFLEQFGI----------------------------------KSCI 297 (569)
T ss_pred --HHHHHHHHHHHhc--CceEEEEechhhhHHHHHHHHHhCc----------------------------------Hhhh
Confidence 0111222211112 4789999999999998877765553 2256
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEcc-----------------------------------ccccccCCCCceEEEe
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATE-----------------------------------TLAAGINMPARTAVLS 299 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~-----------------------------------tla~GINmPa~~VVI~ 299 (924)
.+|.|+..-|.-|.+.|.+|...+||||+ -.++|||+-.+..|++
T Consensus 298 LNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN 377 (569)
T KOG0346|consen 298 LNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN 377 (569)
T ss_pred hcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee
Confidence 78999999999999999999999999999 3589999999999999
Q ss_pred cceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 300 ~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
++.|-++..|+||+||+||.| ..|.++.++.|.+
T Consensus 378 --------FD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e 411 (569)
T KOG0346|consen 378 --------FDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKE 411 (569)
T ss_pred --------cCCCCchHHHHHhccccccCC--CCCceEEEecchH
Confidence 889999999999999999999 8999998888765
No 64
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=4.1e-18 Score=187.36 Aligned_cols=207 Identities=19% Similarity=0.198 Sum_probs=158.7
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHH-HhcccCCceEEecCCCCc--ccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG-WIGQIHGKTELITSSRRP--VPL 93 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~-wL~~~~~~~~vv~s~~Rp--vpL 93 (924)
...|.++.|+||||++.|.|.+|.+.+..|..+..++.|.++||||++- .+.++. .|. +++.++..+.-- --+
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~---dpVrvVqg~vgean~dI 441 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILS---DPVRVVQGEVGEANEDI 441 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhc---CCeeEEEeehhccccch
Confidence 4568999999999999999999999999999999999999999999984 344443 332 344444332100 001
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
.+.+.. ..
T Consensus 442 TQ~V~V------------------------------------------------------------------------~~ 449 (731)
T KOG0339|consen 442 TQTVSV------------------------------------------------------------------------CP 449 (731)
T ss_pred hheeee------------------------------------------------------------------------cc
Confidence 110000 00
Q ss_pred cCchhHHHHHHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 174 SQVPQVIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
+....+..+++.|.. ...+.+|||+.-+..++.++..|.-.++ .|
T Consensus 450 s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~----------------------------------~v 495 (731)
T KOG0339|consen 450 SEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF----------------------------------NV 495 (731)
T ss_pred CcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc----------------------------------ee
Confidence 011123334555543 3446899999999999999988864443 68
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
+..||.+.+.+|..++..|+++...||+||+.+++|+|+|....||+ ++.-.+...|+||+||+||.| ..
T Consensus 496 ~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdththrigrtgRag--~k 565 (731)
T KOG0339|consen 496 SLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTHTHRIGRTGRAG--EK 565 (731)
T ss_pred eeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHHHHHHhhhccccc--cc
Confidence 88999999999999999999999999999999999999999999999 777778899999999999999 78
Q ss_pred cEEEEEeCCCC
Q 002426 333 GHVVLVQTPYE 343 (924)
Q Consensus 333 G~vill~~~~~ 343 (924)
|.++.+.++.+
T Consensus 566 GvayTlvTeKD 576 (731)
T KOG0339|consen 566 GVAYTLVTEKD 576 (731)
T ss_pred ceeeEEechhh
Confidence 99998887743
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=1.1e-17 Score=201.54 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=82.8
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHH---
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS--- 265 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~--- 265 (924)
....++||||+|++.|+.+++.|... |+..+||+|.+.+|.
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~------------------------------------g~~lLHG~m~q~dR~~~~ 313 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKE------------------------------------KFELLTGTLRGAERDDLV 313 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhc------------------------------------CCeEeeCCCCHHHHhhHH
Confidence 44568999999999999999998632 446799999999999
Q ss_pred --HHHHHhhC----CC-------eeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 266 --FIEELFQR----GL-------VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 266 --~VE~lF~~----G~-------ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
.++..|++ |. .+|||||+++++|||++. ++||+ +.. +...|+||+||+||.|....
T Consensus 314 ~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~a--P~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 314 KKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DLA--PFESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CCC--CHHHHHHHhcccCCCCCCCC
Confidence 77888987 54 789999999999999998 56666 222 36899999999999996444
Q ss_pred cEEEEE
Q 002426 333 GHVVLV 338 (924)
Q Consensus 333 G~vill 338 (924)
+.++++
T Consensus 383 ~~i~vv 388 (844)
T TIGR02621 383 CQIAVV 388 (844)
T ss_pred ceEEEE
Confidence 434444
No 66
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.71 E-value=5e-17 Score=193.97 Aligned_cols=205 Identities=23% Similarity=0.272 Sum_probs=155.9
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCCCCcc---cce
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPV---PLT 94 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~~Rpv---pL~ 94 (924)
..|+++.+||+||+|.|+|..+.|..-.||..+++..|+|++|||+|.. +.++.-+.. .|+.++.. .|.+ .++
T Consensus 511 tnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~-~~svV~k~V~ 587 (997)
T KOG0334|consen 511 TNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVG-GRSVVCKEVT 587 (997)
T ss_pred ccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEc-cceeEeccce
Confidence 4577777999999999999999999888999999999999999999974 556654432 33332221 1110 000
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+.+.... ..+ .
T Consensus 588 q~v~V~~--------------------------------------------------------------~e~-------e 598 (997)
T KOG0334|consen 588 QVVRVCA--------------------------------------------------------------IEN-------E 598 (997)
T ss_pred EEEEEec--------------------------------------------------------------Cch-------H
Confidence 0000000 000 0
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
-...+..+|....+ ..++||||.+...|+.+...|...++++..
T Consensus 599 Kf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~~~s---------------------------------- 642 (997)
T KOG0334|consen 599 KFLKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYNCDS---------------------------------- 642 (997)
T ss_pred HHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcchhh----------------------------------
Confidence 01123334444333 569999999999999999999877764422
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
.|||.++.+|..+++.|++|.+++|+||+.+|+|+|++...+||+ ++.|-.-.+|+||+|||||.| ..|.
T Consensus 643 lHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edyvhR~gRTgrag--rkg~ 712 (997)
T KOG0334|consen 643 LHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDYVHRVGRTGRAG--RKGA 712 (997)
T ss_pred hcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cccchhHHHHHHHhcccccCC--ccce
Confidence 899999999999999999999999999999999999999999999 777888888999999999999 8999
Q ss_pred EEEEeCC
Q 002426 335 VVLVQTP 341 (924)
Q Consensus 335 vill~~~ 341 (924)
|+++.++
T Consensus 713 AvtFi~p 719 (997)
T KOG0334|consen 713 AVTFITP 719 (997)
T ss_pred eEEEeCh
Confidence 9999887
No 67
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=7.4e-17 Score=192.46 Aligned_cols=282 Identities=23% Similarity=0.313 Sum_probs=208.2
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHH------hCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIII------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~------~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL 93 (924)
.++.+++.|.||.|++++ ..|+++|-+++ ++-+++++++||..+.|+.++ |+.....+..+.++.||+||
T Consensus 1250 ~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl 1325 (1674)
T KOG0951|consen 1250 SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPL 1325 (1674)
T ss_pred hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCce
Confidence 578999999999999994 78888876543 456899999999999999998 77777778999999999999
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
..++...+.. .+....+ +|.++.
T Consensus 1326 ~i~i~~~~~~--------~~~~~~~-------------------------------------------am~~~~------ 1348 (1674)
T KOG0951|consen 1326 EIHIQSVDIS--------HFESRML-------------------------------------------AMTKPT------ 1348 (1674)
T ss_pred eEEEEEeccc--------hhHHHHH-------------------------------------------HhhhhH------
Confidence 9876433210 0000011 011111
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
+..+... ..+.+|+|||+++|+.|...|..+......+ +...+-...+ .-+..+.+.|.+|||
T Consensus 1349 ------~~ai~~~-a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~--~~~~l~~~~e--------~~~~~l~e~l~~gvg 1411 (1674)
T KOG0951|consen 1349 ------YTAIVRH-AGNRKPAIVFLPTRKHARLVAVDLVTFSHAD--EPDYLLSELE--------ECDETLRESLKHGVG 1411 (1674)
T ss_pred ------HHHHHHH-hcCCCCeEEEeccchhhhhhhhccchhhccC--cHHHHHHHHh--------cchHhhhhccccccc
Confidence 1111211 2356799999999999998877665333222 1111111111 122356678999999
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC--cccCCHHHHHHHhcccCCCCCCC
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~--~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
|-||++...++|-.+|..|.|+|++...- .+|+-+-+.-||+.++..|||.. +.+++.++..||.|+|.|+|
T Consensus 1412 --~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~--- 1485 (1674)
T KOG0951|consen 1412 --HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAG--- 1485 (1674)
T ss_pred --ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCCc---
Confidence 99999999999999999999999999999 99999999999999999999976 46899999999999999854
Q ss_pred ccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhc-cccCchhhHHHH
Q 002426 332 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM-HLSNESDDMKAL 392 (924)
Q Consensus 332 ~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~-~~~~~~~~~~~~ 392 (924)
.|++++... .+.+++.+..++.|++|.+..-.....|. +.++ ++.|++++++|+
T Consensus 1486 --k~vi~~~~~--~k~yykkfl~e~lPves~lq~~lhd~~n~---ei~~~tienkqd~vd~l 1540 (1674)
T KOG0951|consen 1486 --KCVIMCHTP--KKEYYKKFLYEPLPVESHLQHCLHDNFNA---EIVTKTIENKQDAVDYL 1540 (1674)
T ss_pred --cEEEEecCc--hHHHHHHhccCcCchHHHHHHHHHhhhhH---HHHHHHHHhHHHHHHHH
Confidence 788888653 45799999999999999876544444442 2233 778888888874
No 68
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.70 E-value=3.4e-16 Score=179.41 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=179.3
Q ss_pred eeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHH------hCCCCccEEEEcccCCCHHHHHHHhcccCC
Q 002426 6 VVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII------YCPKEVQIICLSATVANADELAGWIGQIHG 79 (924)
Q Consensus 6 ~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~------~lp~~~qiV~LSATi~N~~e~a~wL~~~~~ 79 (924)
.||.|.... +..|++.++||+|||| +|...-..++- .-++..++|.+|||+ |++.|+++++.
T Consensus 149 G~LLRE~l~---Dp~LskYsvIIlDEAH-----ERsl~TDiLlGlLKki~~~R~~LklIimSATl-da~kfS~yF~~--- 216 (674)
T KOG0922|consen 149 GMLLREILK---DPLLSKYSVIILDEAH-----ERSLHTDILLGLLKKILKKRPDLKLIIMSATL-DAEKFSEYFNN--- 216 (674)
T ss_pred hHHHHHHhc---CCccccccEEEEechh-----hhhhHHHHHHHHHHHHHhcCCCceEEEEeeee-cHHHHHHHhcC---
Confidence 466665443 7889999999999999 45444333322 225678999999998 69999999974
Q ss_pred ceEEecCCCCcccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccc
Q 002426 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 159 (924)
Q Consensus 80 ~~~vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (924)
|.++.-..|..|++.+|...+. .+
T Consensus 217 -a~i~~i~GR~fPVei~y~~~p~-----------------~d-------------------------------------- 240 (674)
T KOG0922|consen 217 -APILTIPGRTFPVEILYLKEPT-----------------AD-------------------------------------- 240 (674)
T ss_pred -CceEeecCCCCceeEEeccCCc-----------------hh--------------------------------------
Confidence 6777788899999887754220 01
Q ss_pred cccCchhhhhhhhccCchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCc
Q 002426 160 QHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 238 (924)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~ 238 (924)
.+...+.++..+. ..+.+-++||...+.+.+.+++.|.+.. .......+
T Consensus 241 ---------------Yv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~--------------~~~~~~~~- 290 (674)
T KOG0922|consen 241 ---------------YVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERA--------------KSLPEDCP- 290 (674)
T ss_pred ---------------hHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHh--------------hhccccCc-
Confidence 1223344444444 3455679999999999999998886321 00000000
Q ss_pred ccchhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------
Q 002426 239 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------ 308 (924)
Q Consensus 239 ~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------ 308 (924)
.-+-..||+|+++++..|..--..|.-||++||+++...|.+|.+.+||++. .+|++..
T Consensus 291 -----------~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 291 -----------ELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred -----------ceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 1356799999999999999888889999999999999999999999999863 4466542
Q ss_pred cccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhh
Q 002426 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375 (924)
Q Consensus 309 ~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~ 375 (924)
-.|+|...-.||+|||||.| .|.|+-+++.. .+..+...+.|-- +-.+--..+|.|.+
T Consensus 360 v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~-----~~~~~~~~~~PEI-~R~~Ls~~vL~Lka 417 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRTG---PGKCYRLYTES-----AYDKMPLQTVPEI-QRVNLSSAVLQLKA 417 (674)
T ss_pred EEechHHHHhhhcccCCCCC---CceEEEeeeHH-----HHhhcccCCCCce-eeechHHHHHHHHh
Confidence 36899999999999999998 99999888652 2355555555522 22222245566544
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=7e-17 Score=178.07 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=103.6
Q ss_pred HHHHhCCCCCeEEEEcChHhHHHHHHHhh-hCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHH
Q 002426 184 WHLRSRDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262 (924)
Q Consensus 184 ~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~-~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~ 262 (924)
..+...+...+|+|++|-..+..++..|. ..+- ....+..+.|++...
T Consensus 422 ~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-------------------------------~~~~~s~~t~~l~~k 470 (620)
T KOG0350|consen 422 ALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-------------------------------DNFKVSEFTGQLNGK 470 (620)
T ss_pred HHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-------------------------------ccchhhhhhhhhhHH
Confidence 34445667899999999999988888775 1110 111333467899999
Q ss_pred HHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 263 ~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
.|......|..|.|.|||||+.+|||||+-.+++||+ |+.|.+...|+||+||+||+| ..|.||.+.+..
T Consensus 471 ~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd~P~~~ktyVHR~GRTARAg--q~G~a~tll~~~ 540 (620)
T KOG0350|consen 471 RRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YDPPASDKTYVHRAGRTARAG--QDGYAITLLDKH 540 (620)
T ss_pred HHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cCCCchhhHHHHhhccccccc--CCceEEEeeccc
Confidence 9999999999999999999999999999999999999 899999999999999999999 789999777654
Q ss_pred CCHHHHHHHHh
Q 002426 343 EGAEECCKLLF 353 (924)
Q Consensus 343 ~~~~~~~~l~~ 353 (924)
+ ...+.+++.
T Consensus 541 ~-~r~F~klL~ 550 (620)
T KOG0350|consen 541 E-KRLFSKLLK 550 (620)
T ss_pred c-chHHHHHHH
Confidence 4 333444443
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.67 E-value=1e-15 Score=173.43 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||+|++.|+.++..|...+. ...+..+||.+.+..|+.+
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~--------------------------------~~~~~~l~g~~~~~~R~~~- 316 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGL--------------------------------GDDIGRITGFAPKKDRERA- 316 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCC--------------------------------CceEEeeecCCCHHHHHHh-
Confidence 3456899999999999999999874321 1146779999999988644
Q ss_pred HHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccC
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAG 325 (924)
+..+|||||+++++|||+|...||+. |.+...|+||+||+|
T Consensus 317 -----~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -----MQFDILLGTSTVDVGVDFKRDWLIFS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----ccCCEEEEecHHhcccCCCCceEEEC-----------CCCHHHHhhhcccCC
Confidence 47899999999999999999855532 567889999999998
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.66 E-value=1.2e-15 Score=187.97 Aligned_cols=221 Identities=26% Similarity=0.294 Sum_probs=154.3
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhC-------CCCccEEEEcccCCCHHHHHHHhcccCCceEE-ecCCCCc
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQIHGKTEL-ITSSRRP 90 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-------p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~v-v~s~~Rp 90 (924)
..++++++||+||+|.... -+|..+-.++.+| +.+.|+|+.|||++|+.+++.-+... ...+ +..+..|
T Consensus 191 ~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~--~f~~~v~~~g~~ 267 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGR--DFEVPVDEDGSP 267 (851)
T ss_pred HHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCC--cceeeccCCCCC
Confidence 3467899999999999864 6788777666543 56899999999999999998766532 2233 5566666
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
-...+++...+.....- ..
T Consensus 268 ~~~~~~~~~~p~~~~~~-------------------------------------------------------------~~ 286 (851)
T COG1205 268 RGLRYFVRREPPIRELA-------------------------------------------------------------ES 286 (851)
T ss_pred CCceEEEEeCCcchhhh-------------------------------------------------------------hh
Confidence 66665543222100000 00
Q ss_pred hhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc
Q 002426 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~ 250 (924)
++.+.......++..+. .+..++|+|+.||+.++.+.......- .. .-..+..
T Consensus 287 ~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~--------------~~------------~~~~l~~ 339 (851)
T COG1205 287 IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRL--------------VR------------EGGKLLD 339 (851)
T ss_pred cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHH--------------hh------------cchhhhh
Confidence 00001111222223333 345689999999999998764432100 00 0012334
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccC-CHHHHHHHhcccCCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL-TSNELFQMAGRAGRRGI 329 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pl-s~~ey~Qm~GRAGR~G~ 329 (924)
.|..|||||.+.+|..+|..|++|.++++++|++|..|||+-+...||. ...|. +..+|+|++|||||++
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~--------~g~P~~s~~~~~Q~~GRaGR~~- 410 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIA--------YGYPGVSVLSFRQRAGRAGRRG- 410 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhh--------cCCCCchHHHHHHhhhhccCCC-
Confidence 6899999999999999999999999999999999999999999999998 55676 8999999999999999
Q ss_pred CCccEEEEEeC
Q 002426 330 DNRGHVVLVQT 340 (924)
Q Consensus 330 D~~G~vill~~ 340 (924)
..+.++++..
T Consensus 411 -~~~l~~~v~~ 420 (851)
T COG1205 411 -QESLVLVVLR 420 (851)
T ss_pred -CCceEEEEeC
Confidence 5666666665
No 72
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.5e-15 Score=183.65 Aligned_cols=213 Identities=20% Similarity=0.249 Sum_probs=163.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHH-------HHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEI-------IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 90 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eei-------i~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rp 90 (924)
+..|+.+++|||||+| +|.....-+ +...+++.++|.||||+ |++.|+++++. +-++..+.|.
T Consensus 157 D~~Ls~ys~vIiDEaH-----ERSl~tDilLgllk~~~~~rr~DLKiIimSATl-d~~rfs~~f~~----apvi~i~GR~ 226 (845)
T COG1643 157 DPLLSGYSVVIIDEAH-----ERSLNTDILLGLLKDLLARRRDDLKLIIMSATL-DAERFSAYFGN----APVIEIEGRT 226 (845)
T ss_pred CcccccCCEEEEcchh-----hhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc-CHHHHHHHcCC----CCEEEecCCc
Confidence 7789999999999999 454443333 34456679999999998 68999999974 6788889999
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
.|++.+|...... |. .+
T Consensus 227 fPVei~Y~~~~~~----d~-------~l---------------------------------------------------- 243 (845)
T COG1643 227 YPVEIRYLPEAEA----DY-------IL---------------------------------------------------- 243 (845)
T ss_pred cceEEEecCCCCc----ch-------hH----------------------------------------------------
Confidence 9999877432200 00 00
Q ss_pred hhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc
Q 002426 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~ 250 (924)
...+...+........+..+||.+..++.+..++.|.+..+.. .-
T Consensus 244 -----~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~------------------------------~~ 288 (845)
T COG1643 244 -----LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGD------------------------------DL 288 (845)
T ss_pred -----HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccC------------------------------Cc
Confidence 1123344455555567789999999999999988887422210 01
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------cccCCHHHHHHH
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------RIQLTSNELFQM 320 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------~~pls~~ey~Qm 320 (924)
-|...||.|++.++..|++--..|.-|||+||+++..+|.+|.+.+||++- .+|+... ..|+|-.+..||
T Consensus 289 ~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QR 368 (845)
T COG1643 289 EILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQR 368 (845)
T ss_pred EEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhh
Confidence 478899999999999998888889889999999999999999999999862 3455432 368999999999
Q ss_pred hcccCCCCCCCccEEEEEeCC
Q 002426 321 AGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 321 ~GRAGR~G~D~~G~vill~~~ 341 (924)
+|||||-+ .|.||-+++.
T Consensus 369 aGRAGR~~---pGicyRLyse 386 (845)
T COG1643 369 AGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred ccccccCC---CceEEEecCH
Confidence 99999997 9999988865
No 73
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=169.05 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=115.0
Q ss_pred EEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHhhC-
Q 002426 195 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR- 273 (924)
Q Consensus 195 IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~- 273 (924)
.|.||||+..-.+-..+...+ ...+|+.+|+|+|..|..--.+|..
T Consensus 360 CvV~FSkk~I~~~k~kIE~~g---------------------------------~~k~aVIYGsLPPeTr~aQA~~FNd~ 406 (700)
T KOG0953|consen 360 CVVAFSKKDIFTVKKKIEKAG---------------------------------NHKCAVIYGSLPPETRLAQAALFNDP 406 (700)
T ss_pred eEEEeehhhHHHHHHHHHHhc---------------------------------CcceEEEecCCCCchhHHHHHHhCCC
Confidence 466899999888777765322 2358999999999999999999998
Q ss_pred -CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC-CccEEEEEeCCCCCHHHHHHH
Q 002426 274 -GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID-NRGHVVLVQTPYEGAEECCKL 351 (924)
Q Consensus 274 -G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D-~~G~vill~~~~~~~~~~~~l 351 (924)
+..+|||||+...||+|+.-++|||.++.||+|....+++.++..|.+|||||.|.- ..|.+..+. .++...+.+.
T Consensus 407 ~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~--~eDL~~L~~~ 484 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH--SEDLKLLKRI 484 (700)
T ss_pred CCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee--HhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998743 356666665 4577778888
Q ss_pred HhCCCccccc-ccCCch
Q 002426 352 LFAGVEPLVS-QFTASY 367 (924)
Q Consensus 352 ~~~~~~pL~S-~~~~~~ 367 (924)
+..+++||.. .+.+++
T Consensus 485 l~~p~epi~~agl~pt~ 501 (700)
T KOG0953|consen 485 LKRPVEPIKNAGLWPTD 501 (700)
T ss_pred HhCCchHHHhccCCccH
Confidence 8888888653 234443
No 74
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.63 E-value=3e-15 Score=177.05 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=88.1
Q ss_pred HHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCH
Q 002426 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 261 (924)
Q Consensus 182 ~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~ 261 (924)
.+..+.. ...++|||+.+.+.|+.+++.|...+. .+.++||+++.
T Consensus 336 ~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~----------------------------------~v~~i~G~~~~ 380 (501)
T PHA02558 336 LALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYD----------------------------------KVYYVSGEVDT 380 (501)
T ss_pred HHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCC----------------------------------CEEEEeCCCCH
Confidence 3334433 335788888888899999998875432 57889999999
Q ss_pred HHHHHHHHHhhCCCeeEEEEc-cccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 262 IWKSFIEELFQRGLVKVVFAT-ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 262 ~~R~~VE~lF~~G~ikVL~AT-~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
.+|..+++.|++|...||+|| +.+++|+|+|.+++||. ...+-+...|+||+||+||.+.
T Consensus 381 ~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 381 EDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ecCCcchhhhhhhhhccccCCC
Confidence 999999999999999999999 89999999999999997 5556678899999999999984
No 75
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=165.78 Aligned_cols=210 Identities=16% Similarity=0.201 Sum_probs=153.0
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcc-cCCceEEecCCCCcccceEEe
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ-IHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~-~~~~~~vv~s~~RpvpL~~~~ 97 (924)
-.|+.|.||||||++.|...+|-..+.+++.++|...|.++||||+|+ .+.++-.. ...|+.|- +
T Consensus 160 l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~--~lv~fakaGl~~p~lVR------------l 225 (529)
T KOG0337|consen 160 LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPR--DLVDFAKAGLVPPVLVR------------L 225 (529)
T ss_pred ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCch--hhHHHHHccCCCCceEE------------e
Confidence 348899999999999999999999999999999999999999999995 33333221 11122111 0
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
|- .+.+++.+.+.+.. . ....
T Consensus 226 ----------dv-etkise~lk~~f~~----------~--------------------------------------~~a~ 246 (529)
T KOG0337|consen 226 ----------DV-ETKISELLKVRFFR----------V--------------------------------------RKAE 246 (529)
T ss_pred ----------eh-hhhcchhhhhheee----------e--------------------------------------ccHH
Confidence 00 00111111111100 0 0000
Q ss_pred hHHHHHHHHHhC-CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 178 QVIDTLWHLRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 178 ~~~~~l~~l~~~-~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
....++..+... ...++|||+.++..++-+...+...++ ++...+
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~----------------------------------~~s~iy 292 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG----------------------------------EGSDIY 292 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCC----------------------------------Cccccc
Confidence 111222222221 234799999999999988888876554 556688
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
|.|.+.-|..-...|..|+-.+|+.|+.+|+|+|+|--..||+ ++.|-...-|+||+||+.|+| ..|.+|
T Consensus 293 sslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klFvhRVgr~arag--rtg~aY 362 (529)
T KOG0337|consen 293 SSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLFVHRVGRVARAG--RTGRAY 362 (529)
T ss_pred cccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceEEEEecchhhcc--ccceEE
Confidence 9999999999999999999999999999999999999999999 888889999999999999999 899999
Q ss_pred EEeCCCCCH
Q 002426 337 LVQTPYEGA 345 (924)
Q Consensus 337 ll~~~~~~~ 345 (924)
-++.+.+.+
T Consensus 363 s~V~~~~~~ 371 (529)
T KOG0337|consen 363 SLVASTDDP 371 (529)
T ss_pred EEEecccch
Confidence 777766554
No 76
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.61 E-value=1.5e-14 Score=174.16 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=95.9
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+|++.|+.+++.|...++ .+++.||++.+.+|..++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~eR~~~l~ 486 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGI----------------------------------KVRYLHSEIDTLERVEIIR 486 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhcc----------------------------------ceeeeeCCCCHHHHHHHHH
Confidence 345899999999999999999975543 4678999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEe-cceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLS-SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
.|+.|.+.|||||+.+++|+|+|.+++|+. +..+| ..|.+...|+||+|||||.. .|.|+++.+..
T Consensus 487 ~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadif----G~p~~~~~~iqriGRagR~~---~G~vi~~~~~~ 553 (655)
T TIGR00631 487 DLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKE----GFLRSERSLIQTIGRAARNV---NGKVIMYADKI 553 (655)
T ss_pred HHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccc----cCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCC
Confidence 999999999999999999999999997665 32222 26778999999999999974 79999888754
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.60 E-value=1.2e-14 Score=178.05 Aligned_cols=121 Identities=25% Similarity=0.351 Sum_probs=108.0
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||.||++|+.++..|...++ ..+++|+||++..|+.|-.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~----------------------------------~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGK----------------------------------SAAFYHAGLPPKERETVQK 529 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhch----------------------------------hhHhhhcCCCHHHHHHHHH
Confidence 446899999999999999999986553 3467999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHH
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~ 349 (924)
.|..+.++|++||=.|.||||-|++..||+ +..|-+...|.|=+|||||-| ...+|+++++.. +...+.
T Consensus 530 ~w~~~~~~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~YYQE~GRAGRDG--~~s~C~l~y~~~-D~~~l~ 598 (941)
T KOG0351|consen 530 AWMSDKIRVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGYYQEAGRAGRDG--LPSSCVLLYGYA-DISELR 598 (941)
T ss_pred HHhcCCCeEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHHHHhccccCcCC--CcceeEEecchh-HHHHHH
Confidence 999999999999999999999999999999 889999999999999999999 688999998876 555666
Q ss_pred HHHhCC
Q 002426 350 KLLFAG 355 (924)
Q Consensus 350 ~l~~~~ 355 (924)
.++...
T Consensus 599 ~ll~s~ 604 (941)
T KOG0351|consen 599 RLLTSG 604 (941)
T ss_pred HHHHcc
Confidence 666666
No 78
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.60 E-value=3.8e-14 Score=158.21 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=150.2
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
++.+++.-++.-...+ ..++|-+-|++.+|.+.++|...++ .|.+
T Consensus 431 QvdDL~~EI~~r~~~~-eRvLVTtLTKkmAEdLT~Yl~e~gi----------------------------------kv~Y 475 (663)
T COG0556 431 QVDDLLSEIRKRVAKN-ERVLVTTLTKKMAEDLTEYLKELGI----------------------------------KVRY 475 (663)
T ss_pred cHHHHHHHHHHHHhcC-CeEEEEeehHHHHHHHHHHHHhcCc----------------------------------eEEe
Confidence 3445555555544444 5899999999999999999987765 7899
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceE-EEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA-VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~V-VI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
.|+++...+|..|....+.|.+.|||.-+.|-.|+|+|.++. .|.+..| .....+-..++|-+|||+|. ..|
T Consensus 476 lHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADK----eGFLRse~SLIQtIGRAARN---~~G 548 (663)
T COG0556 476 LHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK----EGFLRSERSLIQTIGRAARN---VNG 548 (663)
T ss_pred eeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCc----cccccccchHHHHHHHHhhc---cCC
Confidence 999999999999999999999999999999999999999994 4555444 23456778899999999997 499
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhhh
Q 002426 334 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413 (924)
Q Consensus 334 ~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~~ 413 (924)
.||+..+.-. ...+....++.. .-+.. |..|. .+|++|..+.+-+..-.....
T Consensus 549 kvIlYAD~iT---~sM~~Ai~ET~R-RR~iQ----~~yN~-------------------~hgItP~ti~K~i~d~l~~~~ 601 (663)
T COG0556 549 KVILYADKIT---DSMQKAIDETER-RREIQ----MAYNE-------------------EHGITPQTIKKKIRDILDGEY 601 (663)
T ss_pred eEEEEchhhh---HHHHHHHHHHHH-HHHHH----HHHHH-------------------hcCCCchhhhhhhhHhhhhhh
Confidence 9999886522 222222222221 11122 22232 346677655544432222211
Q ss_pred c------chhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHH
Q 002426 414 G------SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472 (924)
Q Consensus 414 ~------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 472 (924)
. ............++++.++.|+++|...+. ..+|++.+.+|+++.+++.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~---------~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 602 EEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKEAAK---------NLEFEEAARLRDEIKELKE 657 (663)
T ss_pred hhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHH
Confidence 1 000001112345677788888888875543 3478899999999887643
No 79
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=5.6e-14 Score=170.36 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+...+..... ...++||||+|++.|+.+++.|...++ .++++||+
T Consensus 435 L~~~L~~~~~-~g~~viIf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~~h~~ 479 (652)
T PRK05298 435 LLSEIRKRVA-KGERVLVTTLTKRMAEDLTDYLKELGI----------------------------------KVRYLHSD 479 (652)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHhhcce----------------------------------eEEEEECC
Confidence 3333444333 345899999999999999999975543 56889999
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEe-cceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEE
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS-SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vil 337 (924)
+.+.+|..++..|+.|.+.|||||+.+++|+|+|.+++||. +...| ..|.+...|+||+|||||. ..|.|++
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eif----G~~~~~~~yiqr~GR~gR~---~~G~~i~ 552 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKE----GFLRSERSLIQTIGRAARN---VNGKVIL 552 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccc----ccCCCHHHHHHHhccccCC---CCCEEEE
Confidence 99999999999999999999999999999999999997765 22222 2467889999999999995 4899998
Q ss_pred EeCC
Q 002426 338 VQTP 341 (924)
Q Consensus 338 l~~~ 341 (924)
+++.
T Consensus 553 ~~~~ 556 (652)
T PRK05298 553 YADK 556 (652)
T ss_pred EecC
Confidence 8874
No 80
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=99.55 E-value=1.1e-14 Score=158.42 Aligned_cols=257 Identities=16% Similarity=0.199 Sum_probs=147.7
Q ss_pred HHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002426 402 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481 (924)
Q Consensus 402 ~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 481 (924)
++||++||+|||..+..+..+.++.+++++++.+.... +.++.+|+.++.++....+.. +..+
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~~--------------~~~v~~y~~l~~~l~~~~~~~---~~~i 63 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIED--------------EEDVEEYYDLRQELEELRKEL---RKII 63 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TT--------------CTCCHHHHHHHHHHHHHHHHH---HHHH
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhccccc--------------HhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 47899999999999887777777777766666665421 457899999999998775443 3222
Q ss_pred HHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcch------hhhhhccccchhhhhhhhccCCCC
Q 002426 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS------SKLKNMASINDSFALNRLAQSNGD 555 (924)
Q Consensus 482 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 555 (924)
.+ - ...+..|.+|++..+ .+. +. ...+++++......+. +......|.+++++.|.....+..
T Consensus 64 -~~-p---~~~~~fL~~GRlV~v----~~~-~~-~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~ 132 (268)
T PF13234_consen 64 -TS-P---KYCLPFLQPGRLVVV----RDG-DR-DFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAK 132 (268)
T ss_dssp -CT-C---CCHHHHS-TTEEEEE----EET-TC-EEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CC
T ss_pred -hC-c---HHHHHhCCCCCEEEE----ecC-CC-ccceeEEEeccccccccccccccCCCCCcEEEEEEeeccccccccc
Confidence 00 0 112333446665222 221 22 2223333321111000 011234567888888754332222
Q ss_pred CCC--CCCCCCccccccCCCCcee--eeccceeeeEeecCCCCccccccCCCChHHHhhhhhhhhhHHHHhhhhhccCcc
Q 002426 556 DYD--TQDVKPSYYVALGSDNTWY--TFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLW 631 (924)
Q Consensus 556 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (924)
... +....|+. .+..+.+. +++.++|..|++..+..+ .+..+.+.+..+ ++. .+++..
T Consensus 133 ~~~~~~~~~~p~~---~~~~~~~~vv~v~l~~I~~ISs~rl~lp----~dl~~~~~r~~~-------~~~--l~el~~-- 194 (268)
T PF13234_consen 133 NSSDLPEPVKPCS---PGEKGEMEVVPVPLSCISSISSVRLKLP----KDLRPQEARKQV-------LKS--LQELLK-- 194 (268)
T ss_dssp GTTTGGCTS-BS----TT--EEEEEEEEECCGEEEEEEEE--------TTTTSCCCHHHH-------HHH--HHHHHH--
T ss_pred cccCCCCCCCCCC---CCCCCeEEEEEeeHHHHHHhhceeeeCc----ccccchHHHHHH-------HHH--HHHHHH--
Confidence 111 11222321 12233333 778899999998543311 234444433332 112 122222
Q ss_pred cccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHH
Q 002426 632 CMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 711 (924)
Q Consensus 632 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 711 (924)
+++.++|.|||+.+ |++. +..+.+..++++.|+++|..||+|.|++ +++++..++++..
T Consensus 195 ---------r~~~giP~LDPi~D------mkI~----d~~~~e~~~k~~~Le~rl~~~~~~~~~~--~~~~~~~~~~k~~ 253 (268)
T PF13234_consen 195 ---------RFPDGIPLLDPIKD------MKIK----DPEFVELVKKIEALEKRLSSHPLHKCPD--FEEHYALYHEKAE 253 (268)
T ss_dssp ---------HSSS--TCHHCHHH------H--------HHHHHHHHHHHHHHHHHHHSCHCCSSS--HHHHHHHHHHHHH
T ss_pred ---------hCCCCCCccChHHh------CCCC----cHHHHHHHHHHHHHHHHHHhCCCCCCcC--HHHHHHHHHHHHH
Confidence 23778999999875 8887 5667788899999999999999999976 4788889999999
Q ss_pred HHHHHHHHHHHHHh
Q 002426 712 LKARSKRLTKRIEQ 725 (924)
Q Consensus 712 l~~~~~~l~~~i~~ 725 (924)
|..+++.|+++|++
T Consensus 254 l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 254 LQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 81
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=1e-13 Score=157.39 Aligned_cols=257 Identities=21% Similarity=0.245 Sum_probs=170.5
Q ss_pred eeeccccCCcCCCCCCCCccEEEEccccccC---CCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceE
Q 002426 6 VVFSCSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82 (924)
Q Consensus 6 ~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~---D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~ 82 (924)
.||.|. . -+...|.+-+++|+||||.-. |--+|-+- =|....++.+++..|||+ |++.|..++.. +.
T Consensus 364 GmLlRE--f-L~epdLasYSViiiDEAHERTL~TDILfgLvK--DIar~RpdLKllIsSAT~-DAekFS~fFDd----ap 433 (902)
T KOG0923|consen 364 GMLLRE--F-LSEPDLASYSVIIVDEAHERTLHTDILFGLVK--DIARFRPDLKLLISSATM-DAEKFSAFFDD----AP 433 (902)
T ss_pred hhHHHH--H-hccccccceeEEEeehhhhhhhhhhHHHHHHH--HHHhhCCcceEEeecccc-CHHHHHHhccC----Cc
Confidence 466664 1 236779999999999999531 11122111 134557889999999998 79999999974 55
Q ss_pred EecCCCCcccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCcccccccccc
Q 002426 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 162 (924)
Q Consensus 83 vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (924)
+|.-..|-.|+..||-..+. -+|+
T Consensus 434 IF~iPGRRyPVdi~Yt~~PE-----------------AdYl--------------------------------------- 457 (902)
T KOG0923|consen 434 IFRIPGRRYPVDIFYTKAPE-----------------ADYL--------------------------------------- 457 (902)
T ss_pred EEeccCcccceeeecccCCc-----------------hhHH---------------------------------------
Confidence 66666777777766643220 1111
Q ss_pred CchhhhhhhhccCchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccc
Q 002426 163 LSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241 (924)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~ 241 (924)
...+..+..+. ....+-.|||.....+.+..-+.|.. ....+.....+
T Consensus 458 --------------dAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~--------------~~~~LGski~e--- 506 (902)
T KOG0923|consen 458 --------------DAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE--------------RCRRLGSKIRE--- 506 (902)
T ss_pred --------------HHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH--------------HHHHhccccce---
Confidence 11122223332 34456789999888887766555531 11111111111
Q ss_pred hhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEec-cee---cCCCC------ccc
Q 002426 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS-LSK---RTASG------RIQ 311 (924)
Q Consensus 242 ~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~-~~k---~dg~~------~~p 311 (924)
-=|...|+.|+...+..|++---.|--||++||+++...|.|+.+..||+. ..| |+.+. -.|
T Consensus 507 --------liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~p 578 (902)
T KOG0923|consen 507 --------LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTP 578 (902)
T ss_pred --------EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEee
Confidence 136789999999999999999999999999999999999999999999974 344 43321 368
Q ss_pred CCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhh
Q 002426 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375 (924)
Q Consensus 312 ls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~ 375 (924)
+|.+.-.||+|||||.| .|.|+-+++..- |..-+...+-| +-+-.+--|.||+|+.
T Consensus 579 iSKAsA~QRaGRAGRtg---PGKCfRLYt~~a----Y~~eLE~~t~P-EIqRtnL~nvVL~LkS 634 (902)
T KOG0923|consen 579 ISKASANQRAGRAGRTG---PGKCFRLYTAWA----YEHELEEMTVP-EIQRTNLGNVVLLLKS 634 (902)
T ss_pred echhhhhhhccccCCCC---CCceEEeechhh----hhhhhccCCCc-ceeeccchhHHHHHHh
Confidence 99999999999999998 999998886521 22222222223 3333444577888765
No 82
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.52 E-value=4.3e-14 Score=153.11 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=99.3
Q ss_pred HHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHH
Q 002426 184 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 263 (924)
Q Consensus 184 ~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~ 263 (924)
..+.+..+.++||||.|+.+|+.+-+++...+- -.+.....||..-|.+
T Consensus 498 ~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg-------------------------------~~~scvclhgDrkP~E 546 (725)
T KOG0349|consen 498 VAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG-------------------------------KHYSCVCLHGDRKPDE 546 (725)
T ss_pred hhhhhhccCceEEEEeccccchHHHHHHHHcCC-------------------------------ccceeEEEecCCChhH
Confidence 345566788999999999999999999875431 1124567899999999
Q ss_pred HHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 264 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 264 R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
|..-.+.|+++.+|.|+||+++|+|+||.....+|+ -..|-....|+||+||.||+- ..|.+|.+..
T Consensus 547 rk~nle~Fkk~dvkflictdvaargldi~g~p~~in--------vtlpd~k~nyvhrigrvgrae--rmglaislva 613 (725)
T KOG0349|consen 547 RKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN--------VTLPDDKTNYVHRIGRVGRAE--RMGLAISLVA 613 (725)
T ss_pred HHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE--------EecCcccchhhhhhhccchhh--hcceeEEEee
Confidence 999999999999999999999999999999999999 556777889999999999987 7899996553
No 83
>PRK13766 Hef nuclease; Provisional
Probab=99.50 E-value=6.5e-13 Score=165.79 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=93.1
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.+..++||||.+++.|+.+++.|...++.... ....+-..-|+||++.+|..+.
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~--------------------------~~g~~~~~~~~~~~~~~r~~~~ 416 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR--------------------------FVGQASKDGDKGMSQKEQIEIL 416 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE--------------------------EEccccccccCCCCHHHHHHHH
Confidence 45678999999999999999999654431100 0000000025679999999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
..|++|.++||+||+.++.|+|+|..++||. ++.+.++..|+||+||+||.| .|.++++...
T Consensus 417 ~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~ 478 (773)
T PRK13766 417 DKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAK 478 (773)
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHhcccCcCC---CCEEEEEEeC
Confidence 9999999999999999999999999999999 777889999999999999987 5888877755
No 84
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.8e-13 Score=149.50 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=100.6
Q ss_pred hHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 178 QVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 178 ~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
.+.++++... +.+...+|||+..|..++.++++|...+..-. ...+.++-.-|-
T Consensus 352 ~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-------------------------~rFiGQa~r~~~ 406 (542)
T COG1111 352 KLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-------------------------VRFIGQASREGD 406 (542)
T ss_pred HHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-------------------------eEEeeccccccc
Confidence 3444444433 34557899999999999999999985442110 011222223356
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
.||++.++..+.+.|++|..+|||||++...|+|+|.++.||- |..--|+--++||-||+||- ..|.++
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvpSeIR~IQR~GRTGR~---r~Grv~ 475 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVPSEIRSIQRKGRTGRK---RKGRVV 475 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCcHHHHHHHhhCccccC---CCCeEE
Confidence 8999999999999999999999999999999999999999998 66666788899999999997 589999
Q ss_pred EEeCCC
Q 002426 337 LVQTPY 342 (924)
Q Consensus 337 ll~~~~ 342 (924)
++....
T Consensus 476 vLvt~g 481 (542)
T COG1111 476 VLVTEG 481 (542)
T ss_pred EEEecC
Confidence 887665
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.46 E-value=1e-12 Score=160.30 Aligned_cols=204 Identities=19% Similarity=0.253 Sum_probs=147.7
Q ss_pred CCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecC-CCCcccce
Q 002426 16 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLT 94 (924)
Q Consensus 16 ~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s-~~RpvpL~ 94 (924)
+.+-.+.++++||+||=|+ ||+--.|-|..+..++.++-|||| |=|+.+.--+..++. ..++.| ..+-.|++
T Consensus 709 ~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSAT-PIPRTL~Msm~GiRd-lSvI~TPP~~R~pV~ 781 (1139)
T COG1197 709 SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSAT-PIPRTLNMSLSGIRD-LSVIATPPEDRLPVK 781 (1139)
T ss_pred CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCC-CCcchHHHHHhcchh-hhhccCCCCCCcceE
Confidence 4566789999999999995 788899999999999999999999 334555544554443 334433 22334555
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
.|+...+ +.+
T Consensus 782 T~V~~~d--------------~~~-------------------------------------------------------- 791 (1139)
T COG1197 782 TFVSEYD--------------DLL-------------------------------------------------------- 791 (1139)
T ss_pred EEEecCC--------------hHH--------------------------------------------------------
Confidence 5543322 000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
-.-.+++++... +++-+..|.-+..+..+..|..+ -|+ -.|++
T Consensus 792 ---ireAI~REl~Rg--GQvfYv~NrV~~Ie~~~~~L~~L---------------------VPE-----------arI~v 834 (1139)
T COG1197 792 ---IREAILRELLRG--GQVFYVHNRVESIEKKAERLREL---------------------VPE-----------ARIAV 834 (1139)
T ss_pred ---HHHHHHHHHhcC--CEEEEEecchhhHHHHHHHHHHh---------------------CCc-----------eEEEE
Confidence 001123344332 36666667667777777777521 122 26999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCC-ceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA-RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa-~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
-||-|.+.+-+.|+..|-+|..+||+||....-|||+|. .|.+|+...+|+ .++..|+-||.||.. ..|
T Consensus 835 aHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fG--------LsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 835 AHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFG--------LAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred eecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecccccc--------HHHHHHhccccCCcc--ceE
Confidence 999999999999999999999999999999999999995 556777655553 899999999999998 899
Q ss_pred EEEEEeCCCC
Q 002426 334 HVVLVQTPYE 343 (924)
Q Consensus 334 ~vill~~~~~ 343 (924)
+||+++.+..
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999987643
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.3e-12 Score=154.56 Aligned_cols=106 Identities=15% Similarity=0.033 Sum_probs=85.9
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||.+...++.++..| |+.+.||++++.+|..+..
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---------------------------------------~~~~I~G~ts~~ER~~il~ 535 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---------------------------------------GKPFIYGPTSQQERMQILQ 535 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---------------------------------------CCceEECCCCHHHHHHHHH
Confidence 5569999999988777776655 3456899999999999999
Q ss_pred HhhCC-CeeEEEEccccccccCCCCceEEEecceecCCCCccc-CCHHHHHHHhcccCCCCCCCcc-----EEEEEeCCC
Q 002426 270 LFQRG-LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRG-----HVVLVQTPY 342 (924)
Q Consensus 270 lF~~G-~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p-ls~~ey~Qm~GRAGR~G~D~~G-----~vill~~~~ 342 (924)
.|+.| .+++||+|..+..|||+|..++||. ...+ -+..+|+||+||++|.+.+..+ ..|.++++.
T Consensus 536 ~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 536 NFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 99875 8999999999999999999999998 3333 4799999999999999854332 225555543
No 87
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.45 E-value=2.5e-13 Score=119.08 Aligned_cols=73 Identities=30% Similarity=0.365 Sum_probs=69.1
Q ss_pred hccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCC
Q 002426 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327 (924)
Q Consensus 248 L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~ 327 (924)
....++.+||++++..|..+++.|+.|..+|||||+.+++|||+|..++||. +..|.++.+|.|++||+||.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSESSHHHHHHHHTTSSTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCCCHHHHHHHhhcCCCC
Confidence 4457899999999999999999999999999999999999999999999999 77799999999999999998
Q ss_pred C
Q 002426 328 G 328 (924)
Q Consensus 328 G 328 (924)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 88
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.44 E-value=5.2e-13 Score=128.13 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=91.2
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||.++..++.+++.|...+ .++.++||++++.+|..+..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPG----------------------------------IKVAALHGDGSQEEREEVLK 72 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcC----------------------------------CcEEEEECCCCHHHHHHHHH
Confidence 35689999999999999999886321 37899999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEE
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vil 337 (924)
.|++|..++|++|..++.|+|+|..++||. ...+.+..+|.|++||+||.| ..|.+++
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--------~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~ 130 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVIN--------YDLPWSPSSYLQRIGRAGRAG--QKGTAIL 130 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEE--------eCCCCCHHHheecccccccCC--CCceEEe
Confidence 999999999999999999999997776665 445888999999999999999 5788765
No 89
>PRK09401 reverse gyrase; Reviewed
Probab=99.44 E-value=6.7e-13 Score=168.60 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=71.9
Q ss_pred CCeEEEEcChHh---HHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 192 LPAIWFIFNRRG---CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 192 ~p~IVF~~Sr~~---ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.++||||+|+.+ |+.+++.|...++ .++..||+| +..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi----------------------------------~v~~~hg~l----~~~l- 369 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGI----------------------------------NAELAISGF----ERKF- 369 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCC----------------------------------cEEEEeCcH----HHHH-
Confidence 489999999888 9999999986664 567899999 3333
Q ss_pred HHhhCCCeeEEEE----ccccccccCCCC-ceEEEecceecCCCCcccC------CHHHHHHHhcccC
Q 002426 269 ELFQRGLVKVVFA----TETLAAGINMPA-RTAVLSSLSKRTASGRIQL------TSNELFQMAGRAG 325 (924)
Q Consensus 269 ~lF~~G~ikVL~A----T~tla~GINmPa-~~VVI~~~~k~dg~~~~pl------s~~ey~Qm~GRAG 325 (924)
+.|++|.++|||| |++++||||+|. ++.||+ ++.|- ....|.|+.||+-
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~--------y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF--------YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE--------eCCCCEEEeccccccCHHHHHHHH
Confidence 9999999999999 689999999999 688877 44443 4567999999985
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.44 E-value=8.9e-13 Score=143.13 Aligned_cols=106 Identities=24% Similarity=0.300 Sum_probs=95.1
Q ss_pred CeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHhh
Q 002426 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 272 (924)
Q Consensus 193 p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~ 272 (924)
-.||||.||..||.+|-.|...|+ +.-.+|+||-..+|..|.+..-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi----------------------------------~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGI----------------------------------PAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCc----------------------------------chHHHhcccccchhHHHHHHHh
Confidence 579999999999999988875554 2234899999999999999999
Q ss_pred CCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 273 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 273 ~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
+|.+.|++||..|.||||-|.++.||+ .+.+-+..-|.|-+|||||.| ...+|=+.++..
T Consensus 303 ~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgYYQESGRAGRDG--k~SyCRLYYsR~ 362 (641)
T KOG0352|consen 303 NNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGYYQESGRAGRDG--KRSYCRLYYSRQ 362 (641)
T ss_pred cCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHHHHhccccccCC--Cccceeeeeccc
Confidence 999999999999999999999999999 678889999999999999999 688888887653
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.43 E-value=6.7e-12 Score=145.99 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=75.8
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceE-EEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA-VLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~V-VI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
..||..||.|.+.+|..|+..|++|.++|||||++..-|||.|.-|+ ||.+..+|. .++..|.-||.||.+
T Consensus 508 ~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFG--------LaQLHQLRGRVGRG~ 579 (677)
T COG1200 508 LKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFG--------LAQLHQLRGRVGRGD 579 (677)
T ss_pred ceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhh--------HHHHHHhccccCCCC
Confidence 36999999999999999999999999999999999999999999986 666555553 889999999999998
Q ss_pred CCCccEEEEEeCCCC
Q 002426 329 IDNRGHVVLVQTPYE 343 (924)
Q Consensus 329 ~D~~G~vill~~~~~ 343 (924)
..++|+++..+..
T Consensus 580 --~qSyC~Ll~~~~~ 592 (677)
T COG1200 580 --LQSYCVLLYKPPL 592 (677)
T ss_pred --cceEEEEEeCCCC
Confidence 7999999998765
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=139.12 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=94.7
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
.....||||||+++|+.++..|.+.++ ..+.+|+.|-|.+|.-+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi----------------------------------~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGI----------------------------------HAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCc----------------------------------cccccccccCccccccccc
Confidence 345789999999999999999987765 3356899999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHH------------------------------
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ------------------------------ 319 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Q------------------------------ 319 (924)
.+..|.|.|+|||-.|.||||-|.++.||+ ...|-+...|.|
T Consensus 362 ~w~a~eiqvivatvafgmgidkpdvrfvih--------hsl~ksienyyqasarillrmtkqknksdtggstqinilevc 433 (695)
T KOG0353|consen 362 GWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVC 433 (695)
T ss_pred cccccceEEEEEEeeecccCCCCCeeEEEe--------cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhh
Confidence 999999999999999999999999999999 667888999999
Q ss_pred -------------HhcccCCCCCCCccEEEEEeC
Q 002426 320 -------------MAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 320 -------------m~GRAGR~G~D~~G~vill~~ 340 (924)
-+|||||.+ -...||+.+.
T Consensus 434 tnfkiffavfsekesgragrd~--~~a~cilyy~ 465 (695)
T KOG0353|consen 434 TNFKIFFAVFSEKESGRAGRDD--MKADCILYYG 465 (695)
T ss_pred ccceeeeeeecchhccccccCC--CcccEEEEec
Confidence 789999988 5677887764
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.2e-12 Score=155.44 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=89.2
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..|+||||+|+..|+.+++.|...++ .+..+||.+...++..+.
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi----------------------------------~~~~Lhg~~~~rE~~ii~-- 516 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGL----------------------------------PHQVLNAKQDAEEAAIVA-- 516 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------CEEEeeCCcHHHHHHHHH--
Confidence 46999999999999999999986654 456789987655555555
Q ss_pred hhCCCeeEEEEccccccccCCC---Cce-----EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 271 FQRGLVKVVFATETLAAGINMP---ART-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmP---a~~-----VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
|+.+..+|+|||+.++||+||| .+. +||+ ++.|-+...|.|++|||||.| ..|.++++.+..
T Consensus 517 ~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~--------~d~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~e 586 (656)
T PRK12898 517 RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL--------TERHDSARIDRQLAGRCGRQG--DPGSYEAILSLE 586 (656)
T ss_pred HcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE--------cCCCCCHHHHHHhcccccCCC--CCeEEEEEechh
Confidence 4444557999999999999999 554 8898 789999999999999999999 789999888763
Q ss_pred C
Q 002426 343 E 343 (924)
Q Consensus 343 ~ 343 (924)
+
T Consensus 587 D 587 (656)
T PRK12898 587 D 587 (656)
T ss_pred H
Confidence 3
No 94
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=2.6e-12 Score=146.09 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=162.8
Q ss_pred CCCCCCccEEEEccccccC---CCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~---D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
+..|+..++||+||||.-. |--+|-. ..++.. ..+.++|..|||+ |+..|+++++. |..+.-..|..|++
T Consensus 463 d~~L~kYSviImDEAHERslNtDilfGll-k~~lar-RrdlKliVtSATm-~a~kf~nfFgn----~p~f~IpGRTyPV~ 535 (1042)
T KOG0924|consen 463 DRDLDKYSVIIMDEAHERSLNTDILFGLL-KKVLAR-RRDLKLIVTSATM-DAQKFSNFFGN----CPQFTIPGRTYPVE 535 (1042)
T ss_pred hhhhhheeEEEechhhhcccchHHHHHHH-HHHHHh-hccceEEEeeccc-cHHHHHHHhCC----CceeeecCCccceE
Confidence 6779999999999999532 2122221 122222 4579999999998 79999999983 55666677888887
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
..|...+ . .+|+..
T Consensus 536 ~~~~k~p------------~-----eDYVea------------------------------------------------- 549 (1042)
T KOG0924|consen 536 IMYTKTP------------V-----EDYVEA------------------------------------------------- 549 (1042)
T ss_pred EEeccCc------------h-----HHHHHH-------------------------------------------------
Confidence 6654221 0 111110
Q ss_pred CchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 175 QVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 175 ~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
.+.-.-.+. ....+-.+||...+...|-....+.. .+.++... + .-.-.|-
T Consensus 550 ----avkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~--------------~l~ql~~~-~---------~~~L~vl 601 (1042)
T KOG0924|consen 550 ----AVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKE--------------KLEQLDSA-P---------TTDLAVL 601 (1042)
T ss_pred ----HHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHH--------------HHHhhhcC-C---------CCceEEE
Confidence 000000111 12235689999988776655554431 11111000 0 0011467
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEec-cee---cCCCC------cccCCHHHHHHHhcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS-LSK---RTASG------RIQLTSNELFQMAGR 323 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~-~~k---~dg~~------~~pls~~ey~Qm~GR 323 (924)
.+++-|+...+..|+..-..|.-|++|||+++...+.+|.+.+||.. ..| |+..- -.|+|-..-.||+||
T Consensus 602 piYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGR 681 (1042)
T KOG0924|consen 602 PIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGR 681 (1042)
T ss_pred eehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccc
Confidence 78999999999999887788999999999999999999999999974 333 55431 378999999999999
Q ss_pred cCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhh
Q 002426 324 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375 (924)
Q Consensus 324 AGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~ 375 (924)
|||.| .|.||-+++.. .+..-+...+.| +-+-.+--|++|-|+.
T Consensus 682 AGRt~---pG~cYRlYTe~----ay~~eml~stvP-EIqRTNl~nvVLlLks 725 (1042)
T KOG0924|consen 682 AGRTG---PGTCYRLYTED----AYKNEMLPSTVP-EIQRTNLSNVVLLLKS 725 (1042)
T ss_pred cCCCC---Ccceeeehhhh----HHHhhcccCCCc-hhhhcchhhHHHHHHh
Confidence 99998 99999888652 234444444444 4444555678887765
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.39 E-value=2.1e-11 Score=130.06 Aligned_cols=111 Identities=20% Similarity=0.299 Sum_probs=89.8
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhh-hCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~-~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
....|++||+++....+.++..|. .... ..|++-||. ...|...
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~---------------------------------~~i~~Vhs~--d~~R~Ek 347 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPK---------------------------------ETIASVHSE--DQHRKEK 347 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCc---------------------------------cceeeeecc--CccHHHH
Confidence 345699999999999999988884 2221 145666654 2356666
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
.+.|++|.+++||+|+.|.+|+.+|.+.|++- |..++-.|.+.++|++||+||.--...|.++++..
T Consensus 348 V~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl------gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 348 VEAFRDGKITLLITTTILERGVTFPNVDVFVL------GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHcCceEEEEEeehhhcccccccceEEEe------cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 67899999999999999999999999999887 34677789999999999999988778899887764
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.38 E-value=5.2e-12 Score=163.89 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCCeEEEEcChHhH---HHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 191 MLPAIWFIFNRRGC---DAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 191 ~~p~IVF~~Sr~~c---e~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
..++||||+|++.+ +.+++.|...++ .++.+||+ |..+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi----------------------------------~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGF----------------------------------KIELVSAK-----NKKG 370 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCC----------------------------------eEEEecch-----HHHH
Confidence 35899999999875 788888876554 56778886 8899
Q ss_pred HHHhhCCCeeEEEEc----cccccccCCCC-ceEEEe-cceecCCCCc-------ccCCHHHHHHHhcccCCCCC
Q 002426 268 EELFQRGLVKVVFAT----ETLAAGINMPA-RTAVLS-SLSKRTASGR-------IQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 268 E~lF~~G~ikVL~AT----~tla~GINmPa-~~VVI~-~~~k~dg~~~-------~pls~~ey~Qm~GRAGR~G~ 329 (924)
.+.|++|.++||||| ++++||||+|. +..||+ ++-||...-. .-+....-.+|.|||||.|.
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 999999999999999 48999999998 676666 4433221100 00011223456699999994
No 97
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.37 E-value=3.7e-12 Score=153.96 Aligned_cols=251 Identities=19% Similarity=0.171 Sum_probs=165.0
Q ss_pred CCCCCCCccEEEEccccccC-CCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 17 SESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 17 ~~~~L~~v~~VVlDE~H~l~-D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
++..+.++.+||+||||.-. +.++--..-..+....++.++|+||||+ |++.|.++++ .|.++.-..|..|+..
T Consensus 281 ~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~-dae~fs~YF~----~~pvi~i~grtfpV~~ 355 (924)
T KOG0920|consen 281 SDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL-DAELFSDYFG----GCPVITIPGRTFPVKE 355 (924)
T ss_pred cCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec-chHHHHHHhC----CCceEeecCCCcchHH
Confidence 37789999999999999643 1122222222233345789999999998 5899999998 3778888888889887
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
||...- .... .|. ......+ .+...+ . .. ..+...-.++ -.
T Consensus 356 ~fLEDi--l~~~-------------~~~---~~~~~~~---------~~~~~~--~-~~---~~~~~~~~~~------id 396 (924)
T KOG0920|consen 356 YFLEDI--LSKT-------------GYV---SEDDSAR---------SGPERS--Q-LR---LARLKLWEPE------ID 396 (924)
T ss_pred HHHHHH--HHHh-------------ccc---ccccccc---------cccccC--c-cc---cccchhcccc------cc
Confidence 775321 0000 000 0000000 000000 0 00 0000000000 01
Q ss_pred chhHHHHHHHHHhC-CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWHLRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~l~~~-~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
...+.+++..+.+. ..+.+|||.++-.++....+.|.......+ ..+.-|-.
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~---------------------------~~~~~ilp 449 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD---------------------------SLKFAILP 449 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc---------------------------ccceEEEe
Confidence 23445556666544 367899999999999998888863222110 12234667
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------cccCCHHHHHHHhccc
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------RIQLTSNELFQMAGRA 324 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------~~pls~~ey~Qm~GRA 324 (924)
.|+.|++.++..|....-.|.-||++||+.++.+|.||++..||++. ..||... ..|++...-.||.|||
T Consensus 450 lHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRA 529 (924)
T KOG0920|consen 450 LHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRA 529 (924)
T ss_pred ccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccc
Confidence 89999999999999999999999999999999999999999999863 2255432 3688899999999999
Q ss_pred CCCCCCCccEEEEEeCC
Q 002426 325 GRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 325 GR~G~D~~G~vill~~~ 341 (924)
||.- .|.||-+.+.
T Consensus 530 GRv~---~G~cy~L~~~ 543 (924)
T KOG0920|consen 530 GRVR---PGICYHLYTR 543 (924)
T ss_pred cCcc---CCeeEEeech
Confidence 9995 9999977754
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.36 E-value=1.6e-11 Score=151.18 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=77.3
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHH---
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF--- 266 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~--- 266 (924)
...+++|||||.+.|..+++.|..... . ...+..+||.+.+.+|..
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~------------------------------~~~v~llHsrf~~~dR~~~E~ 607 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN-T------------------------------QVDIDLFHARFTLNDRREKEQ 607 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC-C------------------------------CceEEEEeCCCCHHHHHHHHH
Confidence 446899999999999999998863210 0 015889999999999954
Q ss_pred -HHHHh-hCCC---eeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 267 -IEELF-QRGL---VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 267 -VE~lF-~~G~---ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
+++.| ++|. .+|||||.++++|||++. +++|+. ..| ...|+||+||+||.+.
T Consensus 608 ~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~-DvlItd--------laP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 608 RVIENFGKNGKRNQGRILVATQVVEQSLDLDF-DWLITQ--------LCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHhcCCcCCCeEEEECcchhheeecCC-CeEEEC--------CCC--HHHHHHHHhccCCCCC
Confidence 45567 6666 479999999999999975 788872 233 5789999999999986
No 99
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.33 E-value=6.2e-11 Score=147.04 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=94.2
Q ss_pred HHHHHhCCCCCeEEEEcChHhHHHHHHHhh-hCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCH
Q 002426 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 261 (924)
Q Consensus 183 l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~-~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~ 261 (924)
+..+......++||||+++..|+.+++.|. ..++ .++.+||||++
T Consensus 485 ~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi----------------------------------~~~~ihG~~s~ 530 (956)
T PRK04914 485 IDFLKSHRSEKVLVICAKAATALQLEQALREREGI----------------------------------RAAVFHEGMSI 530 (956)
T ss_pred HHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCe----------------------------------eEEEEECCCCH
Confidence 333444445689999999999999999984 3332 45679999999
Q ss_pred HHHHHHHHHhhC--CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEE
Q 002426 262 IWKSFIEELFQR--GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 262 ~~R~~VE~lF~~--G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vil 337 (924)
.+|..+...|++ |..+||+||+.+++|+|++..++||+ ++.|.+|..|.||+||+||.|. .|.+.+
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn--------fDlP~nP~~~eQRIGR~~RiGQ--~~~V~i 598 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL--------FDLPFNPDLLEQRIGRLDRIGQ--KHDIQI 598 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE--------ecCCCCHHHHHHHhcccccCCC--CceEEE
Confidence 999999999998 46999999999999999999999999 8899999999999999999994 455443
No 100
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=4e-11 Score=141.34 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=67.9
Q ss_pred cceEEEcCCCCHHHH--HHHHHHhhCCCeeEEEEccccccccCCCCceEE-Eecceec--CCCCc-ccCCHHHHHHHhcc
Q 002426 250 KGVAAHHAGCLPIWK--SFIEELFQRGLVKVVFATETLAAGINMPARTAV-LSSLSKR--TASGR-IQLTSNELFQMAGR 323 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R--~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VV-I~~~~k~--dg~~~-~pls~~ey~Qm~GR 323 (924)
..|...|+.+....+ +.+...|++|.++|||+|+.++.|+|+|.++.| |.+.... ..++. ...+...|+|++||
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GR 364 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGR 364 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhc
Confidence 378889999987766 889999999999999999999999999999955 3322110 00000 11245679999999
Q ss_pred cCCCCCCCccEEEEEeCC
Q 002426 324 AGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 324 AGR~G~D~~G~vill~~~ 341 (924)
|||.+ ..|.+++....
T Consensus 365 agR~~--~~g~viiqt~~ 380 (505)
T TIGR00595 365 AGRAE--DPGQVIIQTYN 380 (505)
T ss_pred cCCCC--CCCEEEEEeCC
Confidence 99988 68999866543
No 101
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.29 E-value=4.1e-11 Score=141.40 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.....+|||+.+|..++.+...|.... .. ..+..+ ....|-+.--.||++..+..+.
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~~~--~~-------------------~ir~~~--fiGq~~s~~~~gmtqk~Q~evl 467 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQLH--EL-------------------GIKAEI--FIGQGKSTQSTGMTQKEQKEVL 467 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHhhh--hc-------------------ccccce--eeeccccccccccCHHHHHHHH
Confidence 345689999999999999888886310 00 000000 1112222233799999999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
..|+.|.++|||||++...|+|+|..+.||. |+.--++...+||.|| ||.. .|.++++.+.
T Consensus 468 ~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIrmIQrrGR-gRa~---ns~~vll~t~ 528 (746)
T KOG0354|consen 468 DKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIRMVQRRGR-GRAR---NSKCVLLTTG 528 (746)
T ss_pred HHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHHHHHHhcc-cccc---CCeEEEEEcc
Confidence 9999999999999999999999999999998 6666778999999999 9984 8999988874
No 102
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=1.7e-11 Score=148.48 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||||+|++.|+.++..|...++ .+...||.+...++..+..
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi----------------------------------~~~~L~~~~~~~e~~~i~~ 472 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGI----------------------------------PHNLLNAKNAAKEAQIIAE 472 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------CEEEecCCccHHHHHHHHH
Confidence 567999999999999999999986654 4577999999999999988
Q ss_pred HhhCCCeeEEEEccccccccCC---CCce-----EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRGLVKVVFATETLAAGINM---PART-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINm---Pa~~-----VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.++.| +|+|||+.++||+|+ |.+. +||+ ++.|-+...|.|++|||||.| ..|.++++.+.
T Consensus 473 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--------~d~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~ 540 (790)
T PRK09200 473 AGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--------TERMESRRVDLQLRGRSGRQG--DPGSSQFFISL 540 (790)
T ss_pred cCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe--------ccCCCCHHHHHHhhccccCCC--CCeeEEEEEcc
Confidence 88887 799999999999999 7888 9999 889999999999999999999 89999988876
Q ss_pred CC
Q 002426 342 YE 343 (924)
Q Consensus 342 ~~ 343 (924)
.+
T Consensus 541 eD 542 (790)
T PRK09200 541 ED 542 (790)
T ss_pred hH
Confidence 44
No 103
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.26 E-value=1.1e-10 Score=142.55 Aligned_cols=89 Identities=25% Similarity=0.230 Sum_probs=67.6
Q ss_pred ceEEEcCCCCH--HHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEE-ecceec--CCCCc-ccCCHHHHHHHhccc
Q 002426 251 GVAAHHAGCLP--IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL-SSLSKR--TASGR-IQLTSNELFQMAGRA 324 (924)
Q Consensus 251 GVa~hH~gl~~--~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI-~~~~k~--dg~~~-~pls~~ey~Qm~GRA 324 (924)
.|...|+++.. ..++.+...|++|.++|||+|+.++.|+|+|.+++|+ .+.... ..++. ...+...|+|++|||
T Consensus 454 ~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRa 533 (679)
T PRK05580 454 RILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRA 533 (679)
T ss_pred cEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhc
Confidence 68889999874 5789999999999999999999999999999999663 321100 00000 012346799999999
Q ss_pred CCCCCCCccEEEEEeCC
Q 002426 325 GRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 325 GR~G~D~~G~vill~~~ 341 (924)
||.+ ..|.+++....
T Consensus 534 gR~~--~~g~viiqT~~ 548 (679)
T PRK05580 534 GRAE--KPGEVLIQTYH 548 (679)
T ss_pred cCCC--CCCEEEEEeCC
Confidence 9987 78999977654
No 104
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=1.7e-10 Score=128.97 Aligned_cols=224 Identities=18% Similarity=0.186 Sum_probs=149.4
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhC---------CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 90 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---------p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rp 90 (924)
.+-...+++.||+|...- -+|......+..| ..+.|++-.|||.-++-..-.-+... ..+.++.-+..|
T Consensus 409 ~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~-~E~~Li~~DGSP 486 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANL-SELELVTIDGSP 486 (1034)
T ss_pred HHHHHHHhcccceeeeec-chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC-cceEEEEecCCC
Confidence 355678899999998754 3555444433221 46789999999998864443323222 236788888888
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
..-.+++...+...|--. +.
T Consensus 487 s~~K~~V~WNP~~~P~~~------------------------------~~------------------------------ 506 (1034)
T KOG4150|consen 487 SSEKLFVLWNPSAPPTSK------------------------------SE------------------------------ 506 (1034)
T ss_pred CccceEEEeCCCCCCcch------------------------------hh------------------------------
Confidence 877776644332111000 00
Q ss_pred hhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc
Q 002426 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 250 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~ 250 (924)
+.+.+.....++..+... ...+|.||.+|+-|+.+.....+ ++.+ ....|..
T Consensus 507 -~~~~i~E~s~~~~~~i~~-~~R~IAFC~~R~~CEL~~~~~R~--------------I~~E------------T~~~LV~ 558 (1034)
T KOG4150|consen 507 -KSSKVVEVSHLFAEMVQH-GLRCIAFCPSRKLCELVLCLTRE--------------ILAE------------TAPHLVE 558 (1034)
T ss_pred -hhhHHHHHHHHHHHHHHc-CCcEEEeccHHHHHHHHHHHHHH--------------HHHH------------hhHHHHH
Confidence 001122334444444443 46999999999999986554331 1100 0011222
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
.|..+.||....+|..||...-.|.++-++||+.|..|||+...+.|++ -..|++.+.++|.+||||||..+
T Consensus 559 ~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~--------~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 559 AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLH--------LGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEE--------ccCchhHHHHHHHhccccccCCC
Confidence 3455789999999999999999999999999999999999999999999 67899999999999999999955
Q ss_pred CccEEEEEeCC
Q 002426 331 NRGHVVLVQTP 341 (924)
Q Consensus 331 ~~G~vill~~~ 341 (924)
.-...+....|
T Consensus 631 SLavyva~~~P 641 (1034)
T KOG4150|consen 631 SLAVYVAFLGP 641 (1034)
T ss_pred ceEEEEEeccc
Confidence 44433333333
No 105
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.22 E-value=9.8e-11 Score=149.28 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=60.9
Q ss_pred CCeEEEEcCh---HhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 192 LPAIWFIFNR---RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 192 ~p~IVF~~Sr---~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.++||||+|+ +.|+.+++.|...++ .++.+||+++. .++
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~----------------------------------~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGV----------------------------------KAVAYHATKPK----EDY 368 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCc----------------------------------eEEEEeCCCCH----HHH
Confidence 5799999999 999999999976554 56889999973 578
Q ss_pred HHhhCCCeeEEEE----ccccccccCCCC-ceEEEe
Q 002426 269 ELFQRGLVKVVFA----TETLAAGINMPA-RTAVLS 299 (924)
Q Consensus 269 ~lF~~G~ikVL~A----T~tla~GINmPa-~~VVI~ 299 (924)
+.|++|.++|||| |++++||||+|. +++||+
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 9999999999999 589999999999 687776
No 106
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.22 E-value=7.8e-11 Score=141.62 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=92.7
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....|+||||+|+..++.++..|...++ .....||.+.+.++..+.
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi----------------------------------~~~~L~a~~~~~E~~ii~ 467 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGI----------------------------------PHNLLNAQNAAKEAQIIA 467 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCC----------------------------------CEEEecCCChHHHHHHHH
Confidence 3456999999999999999999986554 456789999999999998
Q ss_pred HHhhCCCeeEEEEccccccccCCC---------CceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 269 ELFQRGLVKVVFATETLAAGINMP---------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmP---------a~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
..|+.| +|+|||+.++||+|+| ...||++ ++.|-...+ .|++|||||.| ..|.++++.
T Consensus 468 ~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit--------~~~ps~rid-~qr~GRtGRqG--~~G~s~~~i 534 (762)
T TIGR03714 468 EAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT--------ERMENSRVD-LQLRGRSGRQG--DPGSSQFFV 534 (762)
T ss_pred HcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe--------cCCCCcHHH-HHhhhcccCCC--CceeEEEEE
Confidence 888888 7999999999999999 8999998 555655555 99999999999 899999888
Q ss_pred CCCC
Q 002426 340 TPYE 343 (924)
Q Consensus 340 ~~~~ 343 (924)
+..+
T Consensus 535 s~eD 538 (762)
T TIGR03714 535 SLED 538 (762)
T ss_pred ccch
Confidence 7644
No 107
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.18 E-value=6.3e-11 Score=103.78 Aligned_cols=72 Identities=31% Similarity=0.394 Sum_probs=65.3
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 249 ~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
..++..+||++++.+|..++..|++|..+||++|++++.|+|+|..+.||. ...+.+..+|.||+||+||.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCCCCHHHHHHhhcccccCC
Confidence 457899999999999999999999999999999999999999997776665 445889999999999999986
No 108
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=5.1e-11 Score=121.96 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=51.9
Q ss_pred EEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCC
Q 002426 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344 (924)
Q Consensus 279 L~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~ 344 (924)
++||+.+.+|+|+-.+++||+ |+.|-++..|+|++|||||-| +.|.+|.+.+...+
T Consensus 302 ~vat~lfgrgmdiervNi~~N--------Ydmp~~~DtYlHrv~rAgrfG--tkglaitfvs~e~d 357 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEND 357 (387)
T ss_pred hHHhhhhccccCcccceeeec--------cCCCCCchHHHHHhhhhhccc--cccceeehhcchhh
Confidence 899999999999999999999 889999999999999999999 89999988876543
No 109
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.09 E-value=6.7e-10 Score=132.93 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=96.1
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....|+||||.|...++.++..|...++ ....+||+ +..|+...
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi----------------------------------~~~~Lna~--q~~rEa~i 446 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGI----------------------------------PHNVLNAK--NHEREAEI 446 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCC----------------------------------CeEEeeCC--hHHHHHHH
Confidence 3567999999999999999999986554 24568888 78999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCC-------ceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPA-------RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa-------~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
..|+.+...|+|||+.++||+|++. ..+||. +++|-+...|.|+.|||||.| ..|.+.++.+.
T Consensus 447 i~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~--------t~~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~ 516 (745)
T TIGR00963 447 IAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSRFFLSL 516 (745)
T ss_pred HHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe--------cCCCCcHHHHHHHhccccCCC--CCcceEEEEec
Confidence 9999999999999999999999999 458888 789999999999999999999 89999988876
Q ss_pred CC
Q 002426 342 YE 343 (924)
Q Consensus 342 ~~ 343 (924)
.+
T Consensus 517 eD 518 (745)
T TIGR00963 517 ED 518 (745)
T ss_pred cH
Confidence 44
No 110
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=9.8e-10 Score=132.59 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=95.6
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||||.|...++.++..|...++ ....+||++...++++|-.
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi----------------------------------~~~~Lna~~~~~Ea~ii~~ 484 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGI----------------------------------PHAVLNAKNHAKEAEIIMN 484 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------CeeEecCCcHHHHHHHHHh
Confidence 567999999999999999999986554 3457899999889999998
Q ss_pred HhhCCCeeEEEEccccccccCCC---Cce-----EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMP---ART-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmP---a~~-----VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.++.|. |+|||+.++||+||+ .+. +||. +++|-+...|.|+.|||||.| ..|.+.++.+.
T Consensus 485 ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~--------te~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sl 552 (796)
T PRK12906 485 AGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSRFYLSL 552 (796)
T ss_pred cCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe--------eecCCcHHHHHHHhhhhccCC--CCcceEEEEec
Confidence 888887 999999999999995 778 8998 778999999999999999999 89999988876
Q ss_pred CC
Q 002426 342 YE 343 (924)
Q Consensus 342 ~~ 343 (924)
.+
T Consensus 553 eD 554 (796)
T PRK12906 553 ED 554 (796)
T ss_pred cc
Confidence 54
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=8.7e-09 Score=125.28 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=90.9
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||||.|+..++.++..|...++ ....+|+ .+..|+....
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI----------------------------------~h~vLna--kq~~REa~Ii 640 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRI----------------------------------AHNVLNA--KQHDREAEIV 640 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC----------------------------------CceeecC--CHHHhHHHHH
Confidence 457999999999999999999986554 2345776 5779999999
Q ss_pred HhhCCCeeEEEEccccccccCCCC---ce-----EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPA---RT-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa---~~-----VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|..+...|+|||+.++||+||+- +. +||. ..++-+...|.|+.|||||.| ..|.++++.+.
T Consensus 641 a~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg--------terhes~Rid~Ql~GRtGRqG--dpGsS~ffvSl 710 (1025)
T PRK12900 641 AEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG--------SERHESRRIDRQLRGRAGRQG--DPGESVFYVSL 710 (1025)
T ss_pred HhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC--------CCCCchHHHHHHHhhhhhcCC--CCcceEEEech
Confidence 999999999999999999999993 32 2355 567788889999999999999 89999998876
Q ss_pred CC
Q 002426 342 YE 343 (924)
Q Consensus 342 ~~ 343 (924)
.+
T Consensus 711 eD 712 (1025)
T PRK12900 711 ED 712 (1025)
T ss_pred hH
Confidence 44
No 112
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.04 E-value=3.5e-09 Score=123.40 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...+++||+.+...++.++..+...+ ++....+..++.+|+.+..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-----------------------------------~~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-----------------------------------IVEAITGETPKEEREAILE 326 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-----------------------------------ceEEEECCCCHHHHHHHHH
Confidence 35699999999999999988875322 2567889999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~ 327 (924)
.|+.|.+++||++..+..|+|+|..+++|. ....-|+..|.||+||.=|.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~--------~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLII--------LRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEE--------eCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999887 33457899999999999994
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.01 E-value=2.5e-09 Score=131.84 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=89.5
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....+++|-|||...+..+...|...+. .+..+||.+...+|...|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----------------------------------~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP----------------------------------KVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC----------------------------------CEEEEecccchhhHHHHH
Confidence 3456899999999999999888874331 478899999999999888
Q ss_pred HHh----hCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 269 ELF----QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 269 ~lF----~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
..+ +.+.-.|+|||.+...|||+. ..++|+. +-+....+||+||.+|.|.+..|.+++.....
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 843 567889999999999999997 6777773 34467899999999999988888888776543
No 114
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.6e-09 Score=122.10 Aligned_cols=87 Identities=20% Similarity=0.136 Sum_probs=74.7
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecc----eecCCCC------cccCCHHHHHHHh
Q 002426 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL----SKRTASG------RIQLTSNELFQMA 321 (924)
Q Consensus 252 Va~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~----~k~dg~~------~~pls~~ey~Qm~ 321 (924)
|-.+++=|++..+..|+.---.|.-=++|||+++...+.||.+..||++. +.||... -.|+|...--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 66788999999999998888899999999999999999999999999863 3355321 2578899999999
Q ss_pred cccCCCCCCCccEEEEEeCC
Q 002426 322 GRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 322 GRAGR~G~D~~G~vill~~~ 341 (924)
|||||-| .||||-++++
T Consensus 687 GRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 687 GRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred cccCCCC---CCceeehhhh
Confidence 9999998 9999988765
No 115
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.90 E-value=2.9e-08 Score=110.25 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=139.4
Q ss_pred eeeccccCCcCCCCCCCCccEEEEccccccC---CCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceE
Q 002426 6 VVFSCSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82 (924)
Q Consensus 6 ~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~---D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~ 82 (924)
.||.|.... +..|..-+++|+||+|.-. |.-.| .+.+++..- ++.++|.+|||+ .+..|..+.+.. -
T Consensus 145 gmLlrEams---~p~l~~y~viiLDeahERtlATDiLmG-llk~v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n~----P 214 (699)
T KOG0925|consen 145 GMLLREAMS---DPLLGRYGVIILDEAHERTLATDILMG-LLKEVVRNR-PDLKLVVMSATL-DAEKFQRYFGNA----P 214 (699)
T ss_pred hHHHHHHhh---CcccccccEEEechhhhhhHHHHHHHH-HHHHHHhhC-CCceEEEeeccc-chHHHHHHhCCC----C
Confidence 477775433 7889999999999999521 11111 233333334 589999999997 578888887642 2
Q ss_pred EecCCCCcccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCcccccccccc
Q 002426 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 162 (924)
Q Consensus 83 vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (924)
++.-.. ..|.+.+|..... .+|
T Consensus 215 ll~vpg-~~PvEi~Yt~e~e-----------------rDy---------------------------------------- 236 (699)
T KOG0925|consen 215 LLAVPG-THPVEIFYTPEPE-----------------RDY---------------------------------------- 236 (699)
T ss_pred eeecCC-CCceEEEecCCCC-----------------hhH----------------------------------------
Confidence 222221 3345544432110 011
Q ss_pred CchhhhhhhhccCchhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccc
Q 002426 163 LSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR 241 (924)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~ 241 (924)
....+.++-.++ ....+.++||..+..+.+.+.+.+... .+++...
T Consensus 237 -------------lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re--------------~~~L~~~------ 283 (699)
T KOG0925|consen 237 -------------LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISRE--------------VDNLGPQ------ 283 (699)
T ss_pred -------------HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHH--------------HHhhccc------
Confidence 112233344444 344568999999999988888877521 1111111
Q ss_pred hhHHhhhccceEEEcCCCCHHHHHHHHHHhhC---C--CeeEEEEccccccccCCCCceEEEec-cee---cCCCC----
Q 002426 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR---G--LVKVVFATETLAAGINMPARTAVLSS-LSK---RTASG---- 308 (924)
Q Consensus 242 ~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~---G--~ikVL~AT~tla~GINmPa~~VVI~~-~~k---~dg~~---- 308 (924)
...-.|-.+| |.++..+.+-... | .-||+++|+.+...+.++.+..||+. ..| |+.+-
T Consensus 284 -----~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRves 354 (699)
T KOG0925|consen 284 -----VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVES 354 (699)
T ss_pred -----cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeee
Confidence 1112455555 5555544433322 2 36899999999999999999999984 333 55542
Q ss_pred --cccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 309 --RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 309 --~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
-.|+|...-.||+|||||.. .|.|+.++++
T Consensus 355 llv~PISkasA~qR~gragrt~---pGkcfrLYte 386 (699)
T KOG0925|consen 355 LLVSPISKASAQQRAGRAGRTR---PGKCFRLYTE 386 (699)
T ss_pred eeeccchHhHHHHHhhhccCCC---CCceEEeecH
Confidence 36899999999999999984 9999988765
No 116
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.83 E-value=6e-08 Score=123.37 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.+..++||||.|+..|+.+++.|... +...++.. -...+...||+.. .+..+.
T Consensus 696 ~~~~KtiIF~~s~~HA~~i~~~L~~~-----------------f~~~~~~~--------~~~~v~~itg~~~--~~~~li 748 (1123)
T PRK11448 696 TGEGKTLIFAATDAHADMVVRLLKEA-----------------FKKKYGQV--------EDDAVIKITGSID--KPDQLI 748 (1123)
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHHH-----------------HHhhcCCc--------CccceEEEeCCcc--chHHHH
Confidence 34468999999999999988887521 00000000 0013445677764 466788
Q ss_pred HHhhCCCe-eEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 269 ELFQRGLV-KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 269 ~lF~~G~i-kVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
..|++|.. +|+|+++.+..|+|+|.+.+||. ...+.|...|+||+||+.|..-
T Consensus 749 ~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 749 RRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCCCHHHHHHHHhhhccCCc
Confidence 99999987 79999999999999999998877 5567889999999999999763
No 117
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.61 E-value=5.1e-09 Score=125.35 Aligned_cols=82 Identities=34% Similarity=0.479 Sum_probs=69.4
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHh-------CCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-------CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 90 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~-------lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rp 90 (924)
.+.+++|+.+|+||+|.+++ +||+++|.+... .++.+|++++|--+.|+.++++|++.... ..+.+..||
T Consensus 1041 r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~svrp 1117 (1230)
T KOG0952|consen 1041 RKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSVRP 1117 (1230)
T ss_pred hhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCccccc
Confidence 46678999999999999997 899999876543 45679999999999999999999997544 667788999
Q ss_pred ccceEEeccccc
Q 002426 91 VPLTWYFSTKTA 102 (924)
Q Consensus 91 vpL~~~~~~~~~ 102 (924)
||++.|+.+.++
T Consensus 1118 vp~~~~i~gfp~ 1129 (1230)
T KOG0952|consen 1118 VPLEVHIDGFPG 1129 (1230)
T ss_pred CCceEeecCCCc
Confidence 999999876554
No 118
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=1.8e-06 Score=105.39 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+.+.+..+.. ...|+||||.|...++.++..|...++ ....+||.
T Consensus 433 v~~~i~~~~~-~g~PVLVgt~Sie~sE~ls~~L~~~gi----------------------------------~h~vLnak 477 (896)
T PRK13104 433 IIEDVRECGV-RKQPVLVGTVSIEASEFLSQLLKKENI----------------------------------KHQVLNAK 477 (896)
T ss_pred HHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHHHHHcCC----------------------------------CeEeecCC
Confidence 3334444333 456999999999999999999987664 34678999
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc--------------------------------------eEEEec
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR--------------------------------------TAVLSS 300 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~--------------------------------------~VVI~~ 300 (924)
+...++++|...|+.| .|+|||+.++||+|+-=- -+||-
T Consensus 478 ~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIg- 554 (896)
T PRK13104 478 FHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIG- 554 (896)
T ss_pred CChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEe-
Confidence 9999999999999999 599999999999998521 01222
Q ss_pred ceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 301 ~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
..++-|..-=.|.-|||||-| ..|.+-++.+=.
T Consensus 555 -------TerhesrRID~QLrGRaGRQG--DPGss~f~lSle 587 (896)
T PRK13104 555 -------SERHESRRIDNQLRGRAGRQG--DPGSSRFYLSLE 587 (896)
T ss_pred -------eccCchHHHHHHhccccccCC--CCCceEEEEEcC
Confidence 224445555679999999999 789888777543
No 119
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=3.7e-06 Score=102.61 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=87.0
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....|+||||.|...++.++..|...++ .....||. +..|+...
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi----------------------------------~~~vLnak--q~eREa~I 471 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGI----------------------------------PHNVLNAK--NHEREAEI 471 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------ceEeccCc--hHHHHHHH
Confidence 4556999999999999999999986554 34567885 77999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCCc------------------------------e--------EEEecceecCCCCcc
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPAR------------------------------T--------AVLSSLSKRTASGRI 310 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~------------------------------~--------VVI~~~~k~dg~~~~ 310 (924)
..|+.|...|+|||+.++||+|++-- . +||. ..+
T Consensus 472 ia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig--------Ter 543 (830)
T PRK12904 472 IAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG--------TER 543 (830)
T ss_pred HHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe--------ccc
Confidence 99999999999999999999999764 1 2222 235
Q ss_pred cCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 311 pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
+-|..-=-|..|||||-| ..|.+-++.+-.
T Consensus 544 hesrRid~QlrGRagRQG--dpGss~f~lSle 573 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQG--DPGSSRFYLSLE 573 (830)
T ss_pred CchHHHHHHhhcccccCC--CCCceeEEEEcC
Confidence 556666789999999999 789888777643
No 120
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=4.2e-06 Score=102.03 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+++.+..+.+. ..|+||||.|...++.++..|...++ ....+||
T Consensus 437 Aii~ei~~~~~~-GrpVLV~t~sv~~se~ls~~L~~~gi----------------------------------~~~vLna 481 (908)
T PRK13107 437 AIIKDIKDCRER-GQPVLVGTVSIEQSELLARLMVKEKI----------------------------------PHEVLNA 481 (908)
T ss_pred HHHHHHHHHHHc-CCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------CeEeccC
Confidence 444555555544 56999999999999999999986554 3456999
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc-------------------------------------eEEEec
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR-------------------------------------TAVLSS 300 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~-------------------------------------~VVI~~ 300 (924)
.+...++++|...|+.|. |+|||+.++||+|+-=- -+||-
T Consensus 482 k~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIg- 558 (908)
T PRK13107 482 KFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILG- 558 (908)
T ss_pred cccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEe-
Confidence 999999999999999998 99999999999998521 12222
Q ss_pred ceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 301 ~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
..++-|..==-|.-|||||-| ..|.+-++.+=.
T Consensus 559 -------TerheSrRID~QLrGRaGRQG--DPGss~f~lSlE 591 (908)
T PRK13107 559 -------TERHESRRIDNQLRGRAGRQG--DAGSSRFYLSME 591 (908)
T ss_pred -------cccCchHHHHhhhhcccccCC--CCCceeEEEEeC
Confidence 223444455579999999999 789888777643
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.27 E-value=1.8e-05 Score=99.83 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+...+..+.....+++|||++|.+..+.++..|..... ..++-.+..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~--------------------------------~~~~~~l~q 708 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE--------------------------------FEGYEVLAQ 708 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc--------------------------------ccCceEEec
Confidence 345555555555567899999999999998888752110 012233333
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCce---EEEecceec-----------------CCC----CcccCC
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART---AVLSSLSKR-----------------TAS----GRIQLT 313 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~---VVI~~~~k~-----------------dg~----~~~pls 313 (924)
|.. ..|..+.+.|++|.-.||+||+.++.|||+|... |||.++-.- .++ +..|..
T Consensus 709 ~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A 787 (850)
T TIGR01407 709 GIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMA 787 (850)
T ss_pred CCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHH
Confidence 433 4688899999999999999999999999999876 455543110 011 123445
Q ss_pred HHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCC
Q 002426 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355 (924)
Q Consensus 314 ~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~ 355 (924)
...+.|-+||.=|... ..|.++++...... ..|-+.+...
T Consensus 788 ~~~l~Qa~GRlIRs~~-D~G~v~ilD~R~~~-~~Yg~~~~~s 827 (850)
T TIGR01407 788 IIRLRQALGRLIRREN-DRGSIVILDRRLVG-KRYGKRFEKS 827 (850)
T ss_pred HHHHHHhhccccccCC-ceEEEEEEcccccc-chHHHHHHHh
Confidence 6789999999999875 47877776654332 2344444444
No 122
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.00 E-value=6.1e-05 Score=94.90 Aligned_cols=110 Identities=16% Similarity=0.058 Sum_probs=89.0
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++|||+......+.+..+|...++ ++..+||+++...|..+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~----------------------------------~y~rIdGsts~~eRq~~Id 531 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGY----------------------------------QYCRIDGNTGGEDRDASID 531 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCC----------------------------------cEEEECCCCCHHHHHHHHH
Confidence 346899999877777766666653332 5677899999999999999
Q ss_pred HhhC---CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQR---GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~---G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|++ +..-+|++|...+.|||+.+.++||. ++.+-+|....|..|||-|-|....=.++-++..
T Consensus 532 ~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi--------yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 532 AFNKPGSEKFVFLLSTRAGGLGINLATADIVIL--------YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred HhccccCCceEEEEeccccccCCchhhCCEEEE--------eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 9976 34567899999999999999999998 7788999999999999999997665555644443
No 123
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.87 E-value=0.00015 Score=88.95 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCC-CCCC-CccEEEEEeC
Q 002426 264 KSFIEELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGR-RGID-NRGHVVLVQT 340 (924)
Q Consensus 264 R~~VE~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR-~G~D-~~G~vill~~ 340 (924)
...+...|++ +.+++||.++-+..|+|.|..++++. +.|+....++|++||+-| ...+ ..|.+|-+..
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl---------dKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL---------DKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE---------eccccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 3456778876 78999999999999999999998876 256666679999999999 3433 3477776666
Q ss_pred CCCCHHHHHHHH
Q 002426 341 PYEGAEECCKLL 352 (924)
Q Consensus 341 ~~~~~~~~~~l~ 352 (924)
..+...++..+.
T Consensus 650 ~~~~l~~Al~~y 661 (667)
T TIGR00348 650 LEKSLIDALSLY 661 (667)
T ss_pred hHHHHHHHHHHh
Confidence 555444444433
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00073 Score=82.20 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=60.2
Q ss_pred ceEEEcCCCCHH--HHHHHHHHhhCCCeeEEEEccccccccCCCCceEE-Eecce--ecCCCCc-ccCCHHHHHHHhccc
Q 002426 251 GVAAHHAGCLPI--WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV-LSSLS--KRTASGR-IQLTSNELFQMAGRA 324 (924)
Q Consensus 251 GVa~hH~gl~~~--~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VV-I~~~~--k~dg~~~-~pls~~ey~Qm~GRA 324 (924)
.|...-++.... .=+.....|.+|.++||+.|..+|-|.|+|.++.| |.+.. =+.+++. ..-+..-++|-+|||
T Consensus 508 rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRA 587 (730)
T COG1198 508 RIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRA 587 (730)
T ss_pred cEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhh
Confidence 444444443332 23456778999999999999999999999999943 33211 1111221 223456689999999
Q ss_pred CCCCCCCccEEEEEeCC
Q 002426 325 GRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 325 GR~G~D~~G~vill~~~ 341 (924)
||.+ ..|.+++-...
T Consensus 588 gR~~--~~G~VvIQT~~ 602 (730)
T COG1198 588 GRAG--KPGEVVIQTYN 602 (730)
T ss_pred ccCC--CCCeEEEEeCC
Confidence 9998 68988876644
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.64 E-value=0.0007 Score=81.30 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhC---C--CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 178 QVIDTLWHLRSR---D--MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 178 ~~~~~l~~l~~~---~--~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
.+...+...+.. + ..++||||.+...++.+...+.+.. |+.. . +=+
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~y---------------------pe~~-----~---~~a 458 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEY---------------------PEYN-----G---RYA 458 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhC---------------------cccc-----C---ceE
Confidence 444455555543 2 5689999999999999888876321 1100 0 001
Q ss_pred EEEcCCCCHHHHHHHHHHhh-CCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 253 AAHHAGCLPIWKSFIEELFQ-RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~-~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
....|. ....+..|-.-+. +..-+|.++.+.+..|||.|.+..++- ...-.|-..|+||+||+-|...+-
T Consensus 459 ~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF--------~r~VrSktkF~QMvGRGTRl~~~~ 529 (875)
T COG4096 459 MKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF--------DRKVRSKTKFKQMVGRGTRLCPDL 529 (875)
T ss_pred EEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee--------hhhhhhHHHHHHHhcCccccCccc
Confidence 111111 2223334433333 456789999999999999997775443 223357889999999999876543
Q ss_pred c-----cEEEEEeCCCCCHHHHHHHHhCCCcccccccCCc
Q 002426 332 R-----GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 366 (924)
Q Consensus 332 ~-----G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~ 366 (924)
. -.-+.+.+ .-...+++...+.+.+.....+
T Consensus 530 ~~~~~dK~~F~ifD----f~~~~~~~~~~~~~~e~~~~~~ 565 (875)
T COG4096 530 GGPEQDKEFFTIFD----FVDNTEYFEMDPEMREGRVRVS 565 (875)
T ss_pred cCccccceeEEEEE----hhhhhhhhccCcccccccccch
Confidence 3 12233321 2245666777777766554443
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.61 E-value=0.00099 Score=84.91 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+...+..+.....++++||++|.+..+.+++.|..... ..++-..-=
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~--------------------------------~~~~~ll~Q 786 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEE--------------------------------LEGYVLLAQ 786 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhccc--------------------------------ccCceEEec
Confidence 444555555555556999999999999988888752110 011111222
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc---eEEEeccee-----------------cCCCC----cccCC
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR---TAVLSSLSK-----------------RTASG----RIQLT 313 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~---~VVI~~~~k-----------------~dg~~----~~pls 313 (924)
|+....|..+.+.|+++.-.|||+|..|..|||+|.- .|||..+-. .+++. ..|..
T Consensus 787 g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A 866 (928)
T PRK08074 787 GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQA 866 (928)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHH
Confidence 4444457888899999888899999999999999974 467765321 11111 23445
Q ss_pred HHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCC
Q 002426 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355 (924)
Q Consensus 314 ~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~ 355 (924)
...+.|-+||.=|...| .|.++++..... ...|-+.+...
T Consensus 867 ~~~lkQg~GRlIRs~~D-~G~v~ilD~R~~-~k~Yg~~~l~s 906 (928)
T PRK08074 867 VLRFKQGFGRLIRTETD-RGTVFVLDRRLT-TTSYGKYFLES 906 (928)
T ss_pred HHHHHhhhhhhcccCCc-eEEEEEecCccc-cchHHHHHHHh
Confidence 67889999999998754 787666655433 33454544444
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.53 E-value=0.00045 Score=85.57 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHh-----------------------h---CCCeeEEEEccccccccCCCCceEEEecceec
Q 002426 251 GVAAHHAGCLPIWKSFIEELF-----------------------Q---RGLVKVVFATETLAAGINMPARTAVLSSLSKR 304 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF-----------------------~---~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~ 304 (924)
-+.++||-.+...|..+|... . .+...|+|||.+...|+|+..--++..
T Consensus 788 ~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~----- 862 (1110)
T TIGR02562 788 HLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD----- 862 (1110)
T ss_pred eEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec-----
Confidence 367788888888888887542 1 257899999999999999976544443
Q ss_pred CCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 305 TASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 305 dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
+-+....+|++||.-|.|....+
T Consensus 863 ------~~~~~sliQ~aGR~~R~~~~~~~ 885 (1110)
T TIGR02562 863 ------PSSMRSIIQLAGRVNRHRLEKVQ 885 (1110)
T ss_pred ------cCcHHHHHHHhhcccccccCCCC
Confidence 34577899999999998865543
No 128
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.45 E-value=0.00012 Score=87.31 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=70.7
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEeccee----cCCC------CcccCCHHHHHH
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK----RTAS------GRIQLTSNELFQ 319 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k----~dg~------~~~pls~~ey~Q 319 (924)
+-+-..|+-+...+...|.+...+|..|++..|.+....+.+-+++.|+.+..- |... .+.|.|.....|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 345567888888888888888999999999999999999999997776654221 1111 357889999999
Q ss_pred HhcccCCCCCCCccEEEEEeCC
Q 002426 320 MAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 320 m~GRAGR~G~D~~G~vill~~~ 341 (924)
+.|||||.. .|.|+.+++.
T Consensus 755 r~gr~grvR---~G~~f~lcs~ 773 (1282)
T KOG0921|consen 755 RKGRAGRVR---PGFCFHLCSR 773 (1282)
T ss_pred hcccCceec---ccccccccHH
Confidence 999999985 8899887754
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.29 E-value=0.00035 Score=72.62 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=47.5
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHh
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 74 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL 74 (924)
...+.+++++|+||+|.+.+..++..++.++..++..+|++++|||+++ .+..++
T Consensus 138 ~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~--~~~~~~ 192 (203)
T cd00268 138 KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPK--EVRDLA 192 (203)
T ss_pred CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCH--HHHHHH
Confidence 3567899999999999999888999999999999999999999999994 344443
No 130
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.24 E-value=0.0091 Score=73.89 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+.+.+..+.. ....++||++|.+..+.++..|... ....|-. ++
T Consensus 522 ~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~---------------------------------~~~~ll~-Q~ 566 (697)
T PRK11747 522 EMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD---------------------------------LRLMLLV-QG 566 (697)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh---------------------------------cCCcEEE-eC
Confidence 34444555555 3445899999999999888877521 0012222 33
Q ss_pred CCCHHHHHHHHHHhh----CCCeeEEEEccccccccCCCC---ceEEEecceec-----------------CCCC----c
Q 002426 258 GCLPIWKSFIEELFQ----RGLVKVVFATETLAAGINMPA---RTAVLSSLSKR-----------------TASG----R 309 (924)
Q Consensus 258 gl~~~~R~~VE~lF~----~G~ikVL~AT~tla~GINmPa---~~VVI~~~~k~-----------------dg~~----~ 309 (924)
.. .|..+.+.|+ .|.-.|||+|..|..|||+|. ..|||.++-.- +++. .
T Consensus 567 ~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~ 643 (697)
T PRK11747 567 DQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEIS 643 (697)
T ss_pred Cc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 21 3555665565 467789999999999999996 45777664211 1111 1
Q ss_pred ccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCC
Q 002426 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 356 (924)
Q Consensus 310 ~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~ 356 (924)
.|.....+.|-+||.=|... +.|.++++..... ...|-+.+....
T Consensus 644 lP~A~~kl~Qg~GRlIRs~~-D~G~i~ilD~R~~-~~~Yg~~~l~sL 688 (697)
T PRK11747 644 VPDASFKLIQAVGRLIRSEQ-DRGRVTILDRRLL-TKRYGKRLLDAL 688 (697)
T ss_pred HHHHHHHHHHHhccccccCC-ceEEEEEEccccc-chhHHHHHHHhC
Confidence 23345678999999999865 4787776665543 334545444443
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.19 E-value=0.0077 Score=75.68 Aligned_cols=137 Identities=17% Similarity=0.208 Sum_probs=85.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+.+.+..+. ...++++||++|.+..+.++..|..... ..+..|. +
T Consensus 636 ~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~-----------------------------~~l~Qg~-----~ 680 (820)
T PRK07246 636 IAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQV-----------------------------SHLAQEK-----N 680 (820)
T ss_pred HHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCC-----------------------------cEEEeCC-----C
Confidence 444444444 3456999999999999888777742110 0011111 1
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEccccccccCCC---CceEEEeccee-----------------cCCC----CcccCCH
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMP---ARTAVLSSLSK-----------------RTAS----GRIQLTS 314 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmP---a~~VVI~~~~k-----------------~dg~----~~~pls~ 314 (924)
.+ +..+.+.|+++.-.||++|..|..|||+| ...|||..+-. .+++ +..|-..
T Consensus 681 ~~---~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~ 757 (820)
T PRK07246 681 GT---AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTI 757 (820)
T ss_pred cc---HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHH
Confidence 22 34567789998889999999999999997 35567765321 0111 1224445
Q ss_pred HHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCC
Q 002426 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 355 (924)
Q Consensus 315 ~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~ 355 (924)
..+.|-+||.=|... ..|.++++...... ..|.+.+...
T Consensus 758 iklkQg~GRLIRs~~-D~Gvv~ilD~R~~~-k~Yg~~~l~s 796 (820)
T PRK07246 758 LRLKQAIGRTMRRED-QKSAVLILDRRILT-KSYGKQILAS 796 (820)
T ss_pred HHHHHHhcccccCCC-CcEEEEEECCcccc-cHHHHHHHHh
Confidence 779999999998764 48877666655332 3344444333
No 132
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0046 Score=76.33 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+...+..+.....+.++||++|.+....+++.+...... -.-..+|
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~---------------------------------~~v~~q~ 512 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERST---------------------------------LPVLTQG 512 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCcc---------------------------------ceeeecC
Confidence 4555566666666668999999999999988888632210 0011222
Q ss_pred CCCHHHHHHHHHHhhC-CCeeEEEEccccccccCCCCc---eEEEecce-----------------ecCCC----CcccC
Q 002426 258 GCLPIWKSFIEELFQR-GLVKVVFATETLAAGINMPAR---TAVLSSLS-----------------KRTAS----GRIQL 312 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~-G~ikVL~AT~tla~GINmPa~---~VVI~~~~-----------------k~dg~----~~~pl 312 (924)
. ..+..+.+.|.+ |..-++|+|..++.|||+|.. .|||.++- ++.++ +..|.
T Consensus 513 ~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~ 589 (654)
T COG1199 513 E---DEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPP 589 (654)
T ss_pred C---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHH
Confidence 2 233344445554 433899999999999999975 57776642 11111 23455
Q ss_pred CHHHHHHHhcccCCCCCCCccEEEEEeCCCCC
Q 002426 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 344 (924)
Q Consensus 313 s~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~ 344 (924)
....+.|-+||.=|. .+..|.++++......
T Consensus 590 A~~~l~QavGRlIR~-~~D~G~ivllD~R~~~ 620 (654)
T COG1199 590 AVIKLRQAVGRLIRS-EDDRGVIVLLDKRYAT 620 (654)
T ss_pred HHHHHHHhhcccccc-CCCceEEEEecccchh
Confidence 678899999999884 5679999888876543
No 133
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.99 E-value=0.00047 Score=69.11 Aligned_cols=46 Identities=37% Similarity=0.450 Sum_probs=39.5
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhC--CCCccEEEEcccCC
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC--PKEVQIICLSATVA 65 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l--p~~~qiV~LSATi~ 65 (924)
.+.++++|||||+|.+.+..++..+..++..+ ..+.|+|++|||++
T Consensus 116 ~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 116 NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP 163 (169)
T ss_dssp TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST
T ss_pred ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC
Confidence 45669999999999999878888888888776 23699999999998
No 134
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=96.92 E-value=0.0076 Score=68.36 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=56.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 327 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~ 327 (924)
|--+++|.-++.+|..|++.|+- ..+.-+|-+-+.-..||+|.-+|+|. ++.+.| |-.+=-||.||-=|+
T Consensus 564 ~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ-ISSH~G------SRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 564 GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ-ISSHGG------SRRQEAQRLGRILRA 634 (776)
T ss_pred CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEE-Eccccc------chHHHHHHHHHHHHH
Confidence 44568999999999999999986 57999999999999999999999998 333333 234567888876554
No 135
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.76 E-value=0.0046 Score=62.58 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=77.8
Q ss_pred HhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHH
Q 002426 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 266 (924)
Q Consensus 187 ~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~ 266 (924)
.+.....++||++|.+..+.+.+.+.... ...++.++..+ ...+..
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~--------------------------------~~~~~~v~~q~--~~~~~~ 50 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERL--------------------------------EEKGIPVFVQG--SKSRDE 50 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS---------------------------------E-ETSCEEEST--CCHHHH
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhc--------------------------------ccccceeeecC--cchHHH
Confidence 33445789999999999988888775321 11123333332 456777
Q ss_pred HHHHhhCCCeeEEEEcc--ccccccCCC---CceEEEecceecCC-----------------C----CcccCCHHHHHHH
Q 002426 267 IEELFQRGLVKVVFATE--TLAAGINMP---ARTAVLSSLSKRTA-----------------S----GRIQLTSNELFQM 320 (924)
Q Consensus 267 VE~lF~~G~ikVL~AT~--tla~GINmP---a~~VVI~~~~k~dg-----------------~----~~~pls~~ey~Qm 320 (924)
+.+.|+++.-.||+|+. .++.|||+| .+.|||.++-.-.. . ...+.......|-
T Consensus 51 ~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa 130 (167)
T PF13307_consen 51 LLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQA 130 (167)
T ss_dssp HHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhh
Confidence 77889999999999999 999999999 56678876432110 0 1133445677899
Q ss_pred hcccCCCCCCCccEEEEEeCCCCC
Q 002426 321 AGRAGRRGIDNRGHVVLVQTPYEG 344 (924)
Q Consensus 321 ~GRAGR~G~D~~G~vill~~~~~~ 344 (924)
+||+=|... ..|.++++......
T Consensus 131 ~GR~iR~~~-D~g~i~llD~R~~~ 153 (167)
T PF13307_consen 131 IGRLIRSED-DYGVIILLDSRFLS 153 (167)
T ss_dssp HHCC--STT--EEEEEEESGGGGG
T ss_pred cCcceeccC-CcEEEEEEcCcccc
Confidence 999999864 58888877765543
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.61 E-value=0.015 Score=71.22 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
++..+..+.. ...|+||.|.|...++.++..|...++.. .++++.
T Consensus 415 ii~ei~~~~~-~gqPVLVgT~SIe~SE~ls~~L~~~gi~h----------------------------------~vLNAk 459 (925)
T PRK12903 415 VVKEVKRVHK-KGQPILIGTAQVEDSETLHELLLEANIPH----------------------------------TVLNAK 459 (925)
T ss_pred HHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCc----------------------------------eeeccc
Confidence 4444444443 45699999999999999999998655421 113332
Q ss_pred CCHHHHHHHHHHhhCC-CeeEEEEccccccccCCCCce--------EEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 259 CLPIWKSFIEELFQRG-LVKVVFATETLAAGINMPART--------AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G-~ikVL~AT~tla~GINmPa~~--------VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
-...+-++|- +.| .-.|.|||+.+.||.||---. +||. ..++-|..-=-|..|||||-|
T Consensus 460 ~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg--------TerheSrRIDnQLrGRaGRQG- 527 (925)
T PRK12903 460 QNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLG--------TDKAESRRIDNQLRGRSGRQG- 527 (925)
T ss_pred chhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEe--------cccCchHHHHHHHhcccccCC-
Confidence 2223333333 344 346899999999999986432 4444 223444444569999999999
Q ss_pred CCccEEEEEeCC
Q 002426 330 DNRGHVVLVQTP 341 (924)
Q Consensus 330 D~~G~vill~~~ 341 (924)
..|.+-++.+-
T Consensus 528 -DpGss~f~lSL 538 (925)
T PRK12903 528 -DVGESRFFISL 538 (925)
T ss_pred -CCCcceEEEec
Confidence 78888766654
No 137
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.52 E-value=0.054 Score=67.43 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+...+..+.....+.++||.+|-..-+.+.+.+...++. +++.. .+.|-.-..
T Consensus 509 ~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~------------~~i~~--------------~k~i~~E~~ 562 (705)
T TIGR00604 509 NLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGIL------------ENIEK--------------KKLIFVETK 562 (705)
T ss_pred HHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHH------------HHHhc--------------CCCEEEeCC
Confidence 4455566666655678999999999988888777643310 00000 011111111
Q ss_pred CCCHHHHHHHHHHhhC----CCeeEEEEc--cccccccCCCC---ceEEEecceecCC------------------CCc-
Q 002426 258 GCLPIWKSFIEELFQR----GLVKVVFAT--ETLAAGINMPA---RTAVLSSLSKRTA------------------SGR- 309 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~----G~ikVL~AT--~tla~GINmPa---~~VVI~~~~k~dg------------------~~~- 309 (924)
+ ...++.+.+.|++ |.=.||||+ ..++.|||+|. +.|||.++-.... .+.
T Consensus 563 ~--~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (705)
T TIGR00604 563 D--AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQ 640 (705)
T ss_pred C--cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccH
Confidence 1 1466777777854 445699999 89999999996 6788876422000 011
Q ss_pred ---ccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 310 ---IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 310 ---~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
.......+.|-+||+=|... +.|.++++...+.
T Consensus 641 ~~y~~~a~~~v~QaiGR~IR~~~-D~G~iillD~R~~ 676 (705)
T TIGR00604 641 DFYEFDAMRAVNQAIGRVIRHKD-DYGSIVLLDKRYA 676 (705)
T ss_pred HHHHHHHHHHHHHHhCccccCcC-ceEEEEEEehhcC
Confidence 11223557899999999764 5888877766543
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.37 E-value=0.022 Score=64.87 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.+..+.+||+.-..--+.+-..+.+.++ |.--+-|.-++..|+..-
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~v----------------------------------g~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKV----------------------------------GSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCC----------------------------------CeEEecCCCCchhHHHHH
Confidence 3445678888776666666555543322 223356888999999999
Q ss_pred HHhhCC-CeeE-EEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc-cEEEEEeCCCCCH
Q 002426 269 ELFQRG-LVKV-VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR-GHVVLVQTPYEGA 345 (924)
Q Consensus 269 ~lF~~G-~ikV-L~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~-G~vill~~~~~~~ 345 (924)
+.|+.. .++| +++-+....|+++.|-++|+- ...+-+|+-++|---||-|.|.-.. +.-|++..... -
T Consensus 536 qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF--------aEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~-D 606 (689)
T KOG1000|consen 536 QSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF--------AELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTA-D 606 (689)
T ss_pred HHhccccceEEEEEEEeecccceeeeccceEEE--------EEecCCCceEEechhhhhhccccceeeEEEEEecCch-H
Confidence 999874 4554 455566789999987775554 2345567777887788888885433 33334443322 1
Q ss_pred HHHHHHHhCCCcccc
Q 002426 346 EECCKLLFAGVEPLV 360 (924)
Q Consensus 346 ~~~~~l~~~~~~pL~ 360 (924)
+..+.++.....-|.
T Consensus 607 dy~Wp~l~~KL~vl~ 621 (689)
T KOG1000|consen 607 DYMWPMLQQKLDVLG 621 (689)
T ss_pred HHHHHHHHHHHHHHh
Confidence 233444444443333
No 139
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.35 E-value=0.042 Score=66.58 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+++.+..+.. ...|+||.+.|-...+.++..|...++.. -.+++.
T Consensus 416 ii~ei~~~~~-~GrPVLVgt~sI~~SE~ls~~L~~~gI~h----------------------------------~vLNAk 460 (764)
T PRK12326 416 IVEHIAEVHE-TGQPVLVGTHDVAESEELAERLRAAGVPA----------------------------------VVLNAK 460 (764)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhCCCcc----------------------------------eeeccC
Confidence 4444444444 45699999999999999999998655311 123333
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc---------------eEEEecceecCCCCcccCCHHHHHHHhcc
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR---------------TAVLSSLSKRTASGRIQLTSNELFQMAGR 323 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~---------------~VVI~~~~k~dg~~~~pls~~ey~Qm~GR 323 (924)
-...+-++|-+.=+.| .|-|||+.+.||.||--- -+||- ..++-|..-=.|..||
T Consensus 461 ~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIg--------TerheSrRID~QLrGR 530 (764)
T PRK12326 461 NDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIG--------TGRHRSERLDNQLRGR 530 (764)
T ss_pred chHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEe--------ccCCchHHHHHHHhcc
Confidence 3333334444333444 589999999999998521 13333 3456667778899999
Q ss_pred cCCCCCCCccEEEEEeCC
Q 002426 324 AGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 324 AGR~G~D~~G~vill~~~ 341 (924)
|||-| ..|.+-++.+=
T Consensus 531 aGRQG--DpGss~f~lSl 546 (764)
T PRK12326 531 AGRQG--DPGSSVFFVSL 546 (764)
T ss_pred cccCC--CCCceeEEEEc
Confidence 99999 78888777654
No 140
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.23 E-value=0.064 Score=65.50 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=64.5
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
.+.+.||+.|....+.+++.+... ...|..++|.-... .|+.
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~----------------------------------~~~Vl~l~s~~~~~---dv~~- 323 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARF----------------------------------TKKVLVLNSTDKLE---DVES- 323 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhc----------------------------------CCeEEEEcCCCCcc---cccc-
Confidence 346778999988888888777532 12566666654444 3332
Q ss_pred hhCCCeeEEEEccccccccCCCCce--EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 271 FQRGLVKVVFATETLAAGINMPART--AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~--VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
=+..+|++=|++...|+++-... -|+.-+. .+.+ --+.....||.||.-.-. ....++..+.
T Consensus 324 --W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk--~~~~--gpd~~s~~Q~lgRvR~l~---~~ei~v~~d~ 387 (824)
T PF02399_consen 324 --WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVK--PMSY--GPDMVSVYQMLGRVRSLL---DNEIYVYIDA 387 (824)
T ss_pred --ccceeEEEEeceEEEEeccchhhceEEEEEec--CCCC--CCcHHHHHHHHHHHHhhc---cCeEEEEEec
Confidence 46789999999999999996442 2222000 1111 123445899999996554 4556666554
No 141
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.15 E-value=0.0095 Score=60.35 Aligned_cols=55 Identities=36% Similarity=0.511 Sum_probs=44.9
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHh
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWI 74 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL 74 (924)
....++++|+||+|.+....+...+..++..++...+++++|||.++. ..++..+
T Consensus 126 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~ 181 (201)
T smart00487 126 ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELF 181 (201)
T ss_pred CHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHh
Confidence 456788999999999997678888998888888889999999999864 4444433
No 142
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.50 E-value=0.1 Score=64.92 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+++.+..+.. ...|+||-|.|-...+.++..|...++.. ..+++.
T Consensus 557 i~~ei~~~~~-~grPvLigt~si~~se~ls~~L~~~gi~h----------------------------------~vLNak 601 (970)
T PRK12899 557 IVAEIASIHR-KGNPILIGTESVEVSEKLSRILRQNRIEH----------------------------------TVLNAK 601 (970)
T ss_pred HHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHHHHHcCCcc----------------------------------eecccc
Confidence 3344444444 34699999999999988888887544311 112222
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCce--------EEEecceecCCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART--------AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~--------VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
-...+-++|-+.=+.| .|.|||+.+.||.||---. +||. ..++-+..--.|..|||||-|
T Consensus 602 ~~~~Ea~iia~AG~~g--~VTIATNmAGRGTDIkl~~~v~~~GGLhVIg--------Ter~es~Rid~Ql~GRagRQG-- 669 (970)
T PRK12899 602 NHAQEAEIIAGAGKLG--AVTVATNMAGRGTDIKLDEEAVAVGGLYVIG--------TSRHQSRRIDRQLRGRCARLG-- 669 (970)
T ss_pred hhhhHHHHHHhcCCCC--cEEEeeccccCCcccccCchHHhcCCcEEEe--------eccCchHHHHHHHhcccccCC--
Confidence 1233334443333334 6899999999999985332 2333 346778888999999999999
Q ss_pred CccEEEEEeCCC
Q 002426 331 NRGHVVLVQTPY 342 (924)
Q Consensus 331 ~~G~vill~~~~ 342 (924)
..|.+-++.+=.
T Consensus 670 dpGss~f~lSlE 681 (970)
T PRK12899 670 DPGAAKFFLSFE 681 (970)
T ss_pred CCCceeEEEEcc
Confidence 899988777543
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.32 E-value=0.14 Score=64.02 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+++.+..+.. ...|+||-+.|-...+.++..|...++... ++++
T Consensus 616 Aii~ei~~~~~-~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~----------------------------------VLNA 660 (1112)
T PRK12901 616 AVIEEITELSE-AGRPVLVGTTSVEISELLSRMLKMRKIPHN----------------------------------VLNA 660 (1112)
T ss_pred HHHHHHHHHHH-CCCCEEEEeCcHHHHHHHHHHHHHcCCcHH----------------------------------Hhhc
Confidence 34444444444 456999999999999999998876554210 0122
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc--------eEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR--------TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~--------~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
.....+-++|-++=+.| .|-|||+.+.||-||-=- -+||- ..++-|..--.|..|||||-|
T Consensus 661 K~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIg--------TerheSrRID~QLrGRaGRQG- 729 (1112)
T PRK12901 661 KLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIG--------TERHESRRVDRQLRGRAGRQG- 729 (1112)
T ss_pred cchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEE--------ccCCCcHHHHHHHhcccccCC-
Confidence 22244555555555555 578999999999998611 23333 346677788899999999999
Q ss_pred CCccEEEEEeCCC
Q 002426 330 DNRGHVVLVQTPY 342 (924)
Q Consensus 330 D~~G~vill~~~~ 342 (924)
..|.+-++.+=.
T Consensus 730 -DPGsS~f~lSLE 741 (1112)
T PRK12901 730 -DPGSSQFYVSLE 741 (1112)
T ss_pred -CCCcceEEEEcc
Confidence 788887766543
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.39 E-value=0.037 Score=52.40 Aligned_cols=45 Identities=36% Similarity=0.499 Sum_probs=33.4
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccC
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 64 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi 64 (924)
.....++||+||+|.+............+...+...+++++|||.
T Consensus 100 ~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 100 SLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred chhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 355899999999999987655444322344456789999999994
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=94.37 E-value=2.2 Score=49.68 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=69.6
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
......+|||++|--+=-.+-++|...++ ..+..|.-.++..-...
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~----------------------------------sF~~i~EYts~~~isRA 342 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENI----------------------------------SFVQISEYTSNSDISRA 342 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCC----------------------------------eEEEecccCCHHHHHHH
Confidence 45667899999996665555566553221 35566777778887788
Q ss_pred HHHhhCCCeeEEEEcccc--ccccCCCCc-eEEEecceecCCCCcccCCHHHHH---HHhcccCC-CCCCCccEEEEEeC
Q 002426 268 EELFQRGLVKVVFATETL--AAGINMPAR-TAVLSSLSKRTASGRIQLTSNELF---QMAGRAGR-RGIDNRGHVVLVQT 340 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tl--a~GINmPa~-~VVI~~~~k~dg~~~~pls~~ey~---Qm~GRAGR-~G~D~~G~vill~~ 340 (924)
-..|..|..++|+-|+=+ =+=..+-.+ +|||- ..|..|.=|- +|.+.... .+....+.|.++.+
T Consensus 343 R~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY---------~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 343 RSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFY---------GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred HHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEE---------CCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 889999999999999954 222334333 45554 3555554444 44443332 11123456777776
Q ss_pred CCC
Q 002426 341 PYE 343 (924)
Q Consensus 341 ~~~ 343 (924)
..+
T Consensus 414 k~D 416 (442)
T PF06862_consen 414 KYD 416 (442)
T ss_pred HhH
Confidence 644
No 146
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=94.32 E-value=0.32 Score=60.59 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+++.+..+.. ...|+||-+.|-...+.++..|...++... | +++
T Consensus 437 Ai~~ei~~~~~-~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~--------------------------------V--LNA 481 (913)
T PRK13103 437 AIITDIKECMA-LGRPVLVGTATIETSEHMSNLLKKEGIEHK--------------------------------V--LNA 481 (913)
T ss_pred HHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHHcCCcHH--------------------------------H--hcc
Confidence 34444444444 446999999999999999999986554210 0 112
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCc-------------------------------------eEEEec
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR-------------------------------------TAVLSS 300 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~-------------------------------------~VVI~~ 300 (924)
--...+-++|-+.=+.| .|-|||+.+.||-||--- -+||-
T Consensus 482 k~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIg- 558 (913)
T PRK13103 482 KYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIA- 558 (913)
T ss_pred ccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEe-
Confidence 11123334444333333 589999999999998310 12222
Q ss_pred ceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 301 ~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
..++-|..-=.|.-|||||-| ..|.+-++.+-.+
T Consensus 559 -------TerheSrRID~QLrGRaGRQG--DPGsS~f~lSlED 592 (913)
T PRK13103 559 -------SERHESRRIDNQLRGRAGRQG--DPGSSRFYLSLED 592 (913)
T ss_pred -------eccCchHHHHHHhccccccCC--CCCceEEEEEcCc
Confidence 234455555679999999999 8898887776533
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.05 E-value=0.76 Score=56.51 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCeeEEEEcc----ccccccCCCCce-EEEeccee--cCCCCc-ccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 265 SFIEELFQRGLVKVVFATE----TLAAGINMPART-AVLSSLSK--RTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 265 ~~VE~lF~~G~ikVL~AT~----tla~GINmPa~~-VVI~~~~k--~dg~~~-~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
..+...|. +...|||+|. .++ | ..+ |+|.+..- +..++. ..-+..-++|-+|||||++ ..|.++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~--~~G~V~ 533 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA--DGGQVV 533 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--CCCEEE
Confidence 34677786 5899999998 666 3 334 33332110 111111 1223556789999999987 789998
Q ss_pred EEe
Q 002426 337 LVQ 339 (924)
Q Consensus 337 ll~ 339 (924)
+..
T Consensus 534 iq~ 536 (665)
T PRK14873 534 VVA 536 (665)
T ss_pred EEe
Confidence 874
No 148
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.81 E-value=0.36 Score=47.40 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=60.4
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCC-eeEEEEccccccccCCCCc---eEEEecceec-----------------C-CCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGL-VKVVFATETLAAGINMPAR---TAVLSSLSKR-----------------T-ASG 308 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~-ikVL~AT~tla~GINmPa~---~VVI~~~~k~-----------------d-g~~ 308 (924)
+.-+..-+..+.+...+.+.|++.. -.|||+|..++.|||+|.. .|||.++-.- . +..
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4445556666666777888888654 3799999889999999974 6777763211 0 111
Q ss_pred c----ccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 309 R----IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 309 ~----~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
. .|.....+.|.+||+=|... ..|.++++..
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~D~ 137 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIADK 137 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCcC-ceEEEEEEec
Confidence 1 13345778999999998765 4787766643
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.60 E-value=0.12 Score=51.97 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=29.3
Q ss_pred CCCccEEEEccccccCCCCchHH-HHHHHHhCCCCccEEEEcccCC
Q 002426 21 LFDVDVIVLDEVHYLSDISRGTV-WEEIIIYCPKEVQIICLSATVA 65 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D~~RG~v-~Eeii~~lp~~~qiV~LSATi~ 65 (924)
....++||+||+|.+.. .. |.+++. .....+|+||||..
T Consensus 144 ~~~~~~vI~DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGSESEEEEETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred cccCCEEEEehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 35678999999999753 33 777776 45678999999964
No 150
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.16 E-value=0.62 Score=57.99 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=56.9
Q ss_pred CeEEEEcC---hHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 193 PAIWFIFN---RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 193 p~IVF~~S---r~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
-.|||++. +..++.++++|.+.|+ .+...|++ ++...+
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi----------------------------------~a~~~~a~-----~~~~le 377 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGI----------------------------------NAELIHAE-----KEEALE 377 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCc----------------------------------eEEEeecc-----chhhhh
Confidence 57999999 6667778888887665 34556653 366778
Q ss_pred HhhCCCeeEEEEcc----ccccccCCCCce--EEEecceec
Q 002426 270 LFQRGLVKVVFATE----TLAAGINMPART--AVLSSLSKR 304 (924)
Q Consensus 270 lF~~G~ikVL~AT~----tla~GINmPa~~--VVI~~~~k~ 304 (924)
.|.+|.++|||... ++-+|||+|.+- +||.++-|+
T Consensus 378 ~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 378 DFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred hhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 99999999999864 789999999765 788877654
No 151
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.33 E-value=0.7 Score=45.45 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHhhCCCe---eEEEEccc--cccccCCCC---ceEEEecceecC------------------CC----C
Q 002426 259 CLPIWKSFIEELFQRGLV---KVVFATET--LAAGINMPA---RTAVLSSLSKRT------------------AS----G 308 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~i---kVL~AT~t--la~GINmPa---~~VVI~~~~k~d------------------g~----~ 308 (924)
..+.....+.+.|++..- .||||+.. ++.|||+|. +.|||.++-.-. +. .
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 107 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEV 107 (142)
T ss_pred CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 333344667777877543 59999988 999999998 568886642110 00 0
Q ss_pred cccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 309 ~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
..+.....+.|.+||+=|... ..|.++++..
T Consensus 108 ~~~~a~~~~~Qa~GR~iR~~~-D~g~i~l~D~ 138 (142)
T smart00491 108 YLFDAMRALAQAIGRAIRHKN-DYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHHHhCccccCcc-ceEEEEEEec
Confidence 123345678899999999874 5787776654
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=89.98 E-value=3.2 Score=50.65 Aligned_cols=127 Identities=15% Similarity=0.057 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+.+.+..+.....+.++|-+.|.+..+.+++.|.. . +..-+- ..|.
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~-~--------------------------------l~~~~l-~qg~ 503 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVEL-G--------------------------------IPAEIV-IQSE 503 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHh-h--------------------------------cCCCEE-EeCC
Confidence 45555666666667899999999999998888752 1 111222 2333
Q ss_pred CCHHHHHHHHHHhhC----CCeeEEEEccccccccCC------C-----CceEEEeccee-c------------CCCC--
Q 002426 259 CLPIWKSFIEELFQR----GLVKVVFATETLAAGINM------P-----ARTAVLSSLSK-R------------TASG-- 308 (924)
Q Consensus 259 l~~~~R~~VE~lF~~----G~ikVL~AT~tla~GINm------P-----a~~VVI~~~~k-~------------dg~~-- 308 (924)
.+ -+....+.|++ |.-.|||+|..|-.|||+ | -..|||..+-. - .|..
T Consensus 504 ~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f 581 (636)
T TIGR03117 504 KN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPW 581 (636)
T ss_pred Cc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChH
Confidence 22 23445556666 578999999999999999 3 34477765421 0 1111
Q ss_pred -cccCCHHHHHHHhcccCCCCCC-CccEEEEEeCC
Q 002426 309 -RIQLTSNELFQMAGRAGRRGID-NRGHVVLVQTP 341 (924)
Q Consensus 309 -~~pls~~ey~Qm~GRAGR~G~D-~~G~vill~~~ 341 (924)
..|...-.+.|-+||-=|...| ..|.++++...
T Consensus 582 ~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 582 EIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred hhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 1233455688999999998866 47877766644
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=89.55 E-value=2 Score=54.61 Aligned_cols=117 Identities=17% Similarity=0.090 Sum_probs=85.8
Q ss_pred HHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHH
Q 002426 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262 (924)
Q Consensus 183 l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~ 262 (924)
|..|.+ ++..+|||..--+.-+-++++|...++.-. -+-|++.-.
T Consensus 692 L~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQ----------------------------------RLDGsvrge 736 (1373)
T KOG0384|consen 692 LPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPFQ----------------------------------RLDGSVRGE 736 (1373)
T ss_pred HHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCcce----------------------------------eccCCcchH
Confidence 334433 456899999888888889999986555221 156888889
Q ss_pred HHHHHHHHhhC---CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 263 WKSFIEELFQR---GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 263 ~R~~VE~lF~~---G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
.|.....-|.. ...-.|.||-.-..|||+-+-+.||- ++-+-+|..=+|---||-|-|.-..=.+|-++
T Consensus 737 lRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII--------FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLV 808 (1373)
T KOG0384|consen 737 LRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII--------FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLV 808 (1373)
T ss_pred HHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE--------eCCCCCcchHHHHHHHHHhhcccceEEEEEEe
Confidence 99999999986 45778999999999999975554444 22334566678888899999976666777666
Q ss_pred CCC
Q 002426 340 TPY 342 (924)
Q Consensus 340 ~~~ 342 (924)
+..
T Consensus 809 Tk~ 811 (1373)
T KOG0384|consen 809 TKN 811 (1373)
T ss_pred cCC
Confidence 554
No 154
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=89.41 E-value=0.28 Score=48.09 Aligned_cols=46 Identities=30% Similarity=0.495 Sum_probs=25.6
Q ss_pred CCCCCCccEEEEccccccCCC---CchHHHHHHHHhCCCCccEEEEcccCCC
Q 002426 18 ESGLFDVDVIVLDEVHYLSDI---SRGTVWEEIIIYCPKEVQIICLSATVAN 66 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~---~RG~v~Eeii~~lp~~~qiV~LSATi~N 66 (924)
+..+.+.+++|+||+|...-. .||..-+ . .. ...+.+|++|||-|-
T Consensus 90 p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~-~-~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 90 PCRLKNYDVIIMDECHFTDPTSIAARGYLRE-L-AE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp SSCTTS-SEEEECTTT--SHHHHHHHHHHHH-H-HH-TTS-EEEEEESS-TT
T ss_pred cccccCccEEEEeccccCCHHHHhhheeHHH-h-hh-ccCeeEEEEeCCCCC
Confidence 555789999999999995310 1221111 1 11 234789999999884
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.07 E-value=3.5 Score=52.48 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=86.0
Q ss_pred CeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHhh
Q 002426 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 272 (924)
Q Consensus 193 p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~ 272 (924)
++++|+.-....+-+...+...+ .....++|+++...|......|.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~----------------------------------~~~~~ldG~~~~~~r~~~i~~f~ 758 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG----------------------------------IKYVRLDGSTPAKRRQELIDRFN 758 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC----------------------------------CcEEEEeCCCChhhHHHHHHHhh
Confidence 89999988887777777765332 14678999999999999999999
Q ss_pred CC--CeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 273 RG--LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 273 ~G--~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
++ ..-++++|.....|+|+-+-++||. ++.+..+....|-..||-|-|....=.++-+..
T Consensus 759 ~~~~~~v~lls~kagg~glnLt~a~~vi~--------~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~ 820 (866)
T COG0553 759 ADEEEKVFLLSLKAGGLGLNLTGADTVIL--------FDPWWNPAVELQAIDRAHRIGQKRPVKVYRLIT 820 (866)
T ss_pred cCCCCceEEEEecccccceeecccceEEE--------eccccChHHHHHHHHHHHHhcCcceeEEEEeec
Confidence 85 5667777789999999998888888 678889999999999999998665555554443
No 156
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=87.63 E-value=3.3 Score=52.69 Aligned_cols=108 Identities=20% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE--EEcCCCCHHHHHHHHH
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA--AHHAGCLPIWKSFIEE 269 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa--~hH~gl~~~~R~~VE~ 269 (924)
.+++|||.=+...+-+-+-|.+.-+ ..|. -.-|..+|..|..+.+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~m---------------------------------psVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYM---------------------------------PSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhc---------------------------------CceeEEEecCCCCcHHHHHHHH
Confidence 4789999887777666555532111 1233 4679999999999999
Q ss_pred HhhCC-CeeEEEEc-cccccccCCC-CceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRG-LVKVVFAT-ETLAAGINMP-ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G-~ikVL~AT-~tla~GINmP-a~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|.++ .|+||+-| -+-..|+|+- |-||||. .|-| +|..=+|-.-||-|-|.-..=+|+-+.+.
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv--------EHDW-NPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV--------EHDW-NPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEE--------ecCC-CchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 99998 89988755 5678999995 6667775 2322 23333898999999996666666755544
No 157
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=87.62 E-value=4.8 Score=49.01 Aligned_cols=117 Identities=18% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCH
Q 002426 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 261 (924)
Q Consensus 182 ~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~ 261 (924)
++..|.+. ...++||..-.+.-+-+-.++.-.++ ..+-.-|..+.
T Consensus 479 LL~~Lk~~-GhRVLIFSQmt~mLDILeDyc~~R~y----------------------------------~ycRiDGSt~~ 523 (971)
T KOG0385|consen 479 LLPKLKEQ-GHRVLIFSQMTRMLDILEDYCMLRGY----------------------------------EYCRLDGSTSH 523 (971)
T ss_pred HHHHHHhC-CCeEEEeHHHHHHHHHHHHHHHhcCc----------------------------------eeEeecCCCCc
Confidence 34445444 46899998666666666665543222 34456789999
Q ss_pred HHHHHHHHHhhCC---CeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEE
Q 002426 262 IWKSFIEELFQRG---LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338 (924)
Q Consensus 262 ~~R~~VE~lF~~G---~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill 338 (924)
.+|....+.|..- ..=.|++|-.-..|||+-+-++||. ++.+-+|..=+|-.-||-|-|.-..=.||-+
T Consensus 524 eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl--------yDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 524 EEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL--------YDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred HHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE--------ecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 9999999999874 3457889999999999999999988 4455556667788888888886666667755
Q ss_pred eCC
Q 002426 339 QTP 341 (924)
Q Consensus 339 ~~~ 341 (924)
++.
T Consensus 596 ite 598 (971)
T KOG0385|consen 596 ITE 598 (971)
T ss_pred ecc
Confidence 554
No 158
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=85.44 E-value=7.6 Score=48.66 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+++.+..... ...|+||-|.|-...+.++..|...++.. -++++-
T Consensus 413 I~~ei~~~~~-~grPVLIgT~SIe~SE~ls~~L~~~gi~h----------------------------------~vLNAk 457 (870)
T CHL00122 413 IADECLQMHQ-TGRPILIGTTTIEKSELLSQLLKEYRLPH----------------------------------QLLNAK 457 (870)
T ss_pred HHHHHHHHHh-cCCCEEEeeCCHHHHHHHHHHHHHcCCcc----------------------------------ceeeCC
Confidence 3333333333 45699999999999999998887555311 123332
Q ss_pred C--CHHHHHHHHHHhhCCCeeEEEEccccccccCC
Q 002426 259 C--LPIWKSFIEELFQRGLVKVVFATETLAAGINM 291 (924)
Q Consensus 259 l--~~~~R~~VE~lF~~G~ikVL~AT~tla~GINm 291 (924)
- ...+-++|-++=+.| .|-|||+.+.||.||
T Consensus 458 ~~~~~~EA~IIA~AG~~G--~VTIATNMAGRGTDI 490 (870)
T CHL00122 458 PENVRRESEIVAQAGRKG--SITIATNMAGRGTDI 490 (870)
T ss_pred CccchhHHHHHHhcCCCC--cEEEeccccCCCcCe
Confidence 1 133444444433344 578999999999886
No 159
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=83.87 E-value=9.6 Score=48.06 Aligned_cols=49 Identities=10% Similarity=-0.103 Sum_probs=32.5
Q ss_pred CCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCC
Q 002426 17 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 65 (924)
Q Consensus 17 ~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~ 65 (924)
+.-.++.|..+||||||.+....--+-+-.+...-.+..-+.+|||...
T Consensus 25 ~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 25 GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3566889999999999998643332222222223345667899999865
No 160
>PF13871 Helicase_C_4: Helicase_C-like
Probab=82.01 E-value=2.1 Score=46.71 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
-..|.+|...|+|.|+..+.||.+-|-.-+-+.-.+.--....|-+....+|+.||+-|.|.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccc
Confidence 35799999999999999999999987433322111100013478899999999999999985
No 161
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=80.64 E-value=20 Score=44.64 Aligned_cols=83 Identities=12% Similarity=-0.002 Sum_probs=66.3
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhhC--CCeeEEEE-ccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccC
Q 002426 249 LKGVAAHHAGCLPIWKSFIEELFQR--GLVKVVFA-TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325 (924)
Q Consensus 249 ~~GVa~hH~gl~~~~R~~VE~lF~~--G~ikVL~A-T~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAG 325 (924)
.+.+...||.++..+|..+.+.|.+ +..+|+++ |-..+-|||+=+.+-||. .+.+.+|+.=.|-++||=
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~dWNPa~d~QAmaR~~ 690 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPDWNPAVDQQAMARAW 690 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCCCCchhHHHHHHHhc
Confidence 3467889999999999999999987 34456555 455689999987776666 567788999999999999
Q ss_pred CCCCCCccEEEEEe
Q 002426 326 RRGIDNRGHVVLVQ 339 (924)
Q Consensus 326 R~G~D~~G~vill~ 339 (924)
|.|.-..-++|-+.
T Consensus 691 RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 691 RDGQKKPVYIYRLL 704 (776)
T ss_pred cCCCcceEEEEEee
Confidence 99977777777444
No 162
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=80.58 E-value=1.9 Score=47.51 Aligned_cols=40 Identities=35% Similarity=0.425 Sum_probs=27.2
Q ss_pred cEEEEccccccCCCCch--------HHHHHHHHhCCCCccEEEEcccCC
Q 002426 25 DVIVLDEVHYLSDISRG--------TVWEEIIIYCPKEVQIICLSATVA 65 (924)
Q Consensus 25 ~~VVlDE~H~l~D~~RG--------~v~Eeii~~lp~~~qiV~LSATi~ 65 (924)
++|||||+|.+....-+ ...-++-..|| +.++|..|||-.
T Consensus 174 gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATga 221 (303)
T PF13872_consen 174 GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGA 221 (303)
T ss_pred ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEeccccc
Confidence 48999999999765432 12222333465 678999999954
No 163
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=80.49 E-value=1.9 Score=39.76 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccc
Q 002426 738 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 738 ~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~ 800 (924)
...|+.||.||+++ .+|..|+.++.+-- +.-++-+|..|..-+. ..+++.++|++-.++
T Consensus 3 ~~~L~~Lgald~~~-~lT~lG~~~~~lPl--~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~~~ 61 (102)
T PF04408_consen 3 LELLKSLGALDENG-NLTPLGRKMSQLPL--DPRLAKMLLYGIQFGC-LDEALIIAAILSVRS 61 (102)
T ss_dssp HHHHHHTTSB-TTS--B-HHHHHHTTSSS---HHHHHHHHHHHHCT--HHHHHHHHHHHTSS-
T ss_pred HHHHHHCCCCCCCC-CcCHHHHHHHHCCC--chHhHhHhhhcccccc-HHHHHHHHHHHcCCC
Confidence 46799999999885 89999999999884 4445555554444333 233444444443333
No 164
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=78.43 E-value=19 Score=43.57 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHH
Q 002426 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262 (924)
Q Consensus 183 l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~ 262 (924)
+..|.. ....+++|..-.+..+.+.++|...+++ ---+.|.....
T Consensus 1037 L~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~----------------------------------ylRLDGSsk~~ 1081 (1185)
T KOG0388|consen 1037 LPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYT----------------------------------YLRLDGSSKAS 1081 (1185)
T ss_pred HHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccc----------------------------------eEEecCcchhh
Confidence 344443 4468999988888888777777644431 12245777778
Q ss_pred HHHHHHHHhhCCCee-EEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 263 WKSFIEELFQRGLVK-VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 263 ~R~~VE~lF~~G~ik-VL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
.|.-+...|+...|- .|.+|..-..|||+-|.+.||- |+.+-+|.-=.|-..||-|-|.-..-+|+-+..
T Consensus 1082 dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF--------YdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1082 DRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF--------YDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred HHHHHHhhccCCceEEEEEecccCcccccccccceEEE--------ecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 899999999986655 5789999999999988776665 333344555567778888888655556664443
No 165
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=78.41 E-value=3.6 Score=48.47 Aligned_cols=181 Identities=15% Similarity=0.093 Sum_probs=98.2
Q ss_pred ccHHHHH--HHHHHHhHcCcccCCC--CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccccc--
Q 002426 729 SGWKEFL--RISNVIHETRALDINT--QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-- 802 (924)
Q Consensus 729 ~~~~~f~--~~~~VL~~lgyld~~~--~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~~~-- 802 (924)
++|..|+ +.+.-|+.+|+|+.+| ..+|..||+++.=.. .--.+|.|+.|+..+.+|-.+|+-+.-|=...-+
T Consensus 612 ~~g~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl--~p~~a~~Ir~~v~~~~~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 612 MLGAAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFL--GPSEAEFIREGVLASMDPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred hccccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeec--CchHHHHHHHhhhccCChHhHhhccccccccccChH
Confidence 4566554 8899999999999665 589999998775332 2346899999999999999999877654321100
Q ss_pred c-cccCCCCCCCCCcHHHHHHHHHHHHH-------HHHHHHHHHHcCCCCCCCCCchHHH---------HHHHHhCCCCH
Q 002426 803 V-RLWKNNSSIYEPSTTVINVINVLDEH-------RSSFLELQEKHGVEIPCCLDSQFSG---------MVEAWASGLTW 865 (924)
Q Consensus 803 ~-r~~~~~~~~~~~~~~l~~~~~~l~~~-------~~~l~~~~~~~~l~~~~~~~~~l~~---------~v~~Wa~G~~f 865 (924)
. |.=+..--...|+.-...++..+.+- -.++.+..-..-.++..+..-+..+ ++..--.|.+-
T Consensus 690 l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p 769 (830)
T COG1202 690 LKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDP 769 (830)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCH
Confidence 0 00000000111222222122211111 1111111111111222211111122 22334578887
Q ss_pred HHHHHh------cCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHH
Q 002426 866 REMMMD------CALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDAS 911 (924)
Q Consensus 866 ~~i~~~------t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~ 911 (924)
.+|-+. -..++|||.-|+-.+.-+|.-+...|.+ .++..+.|..-.
T Consensus 770 ~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk 823 (830)
T COG1202 770 SQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALK 823 (830)
T ss_pred HHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 777765 4689999999998777777666555533 445444444433
No 166
>COG4889 Predicted helicase [General function prediction only]
Probab=75.56 E-value=4.4 Score=49.93 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=59.1
Q ss_pred ceEEEc--CCCCHHHHHHHHHH---hhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccC
Q 002426 251 GVAAHH--AGCLPIWKSFIEEL---FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325 (924)
Q Consensus 251 GVa~hH--~gl~~~~R~~VE~l---F~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAG 325 (924)
.|.+-| |.|...+|...+.+ |.....|||---.-|+.|||+||..-||- |+| --+.-+.+|-+||.=
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~p----r~smVDIVQaVGRVM 570 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDP----RSSMVDIVQAVGRVM 570 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecC----chhHHHHHHHHHHHH
Confidence 344445 77888888655553 56688999999999999999999996665 232 245778999999998
Q ss_pred CCCCC-CccEEEEE
Q 002426 326 RRGID-NRGHVVLV 338 (924)
Q Consensus 326 R~G~D-~~G~vill 338 (924)
|.... ..|++|+-
T Consensus 571 RKa~gK~yGYIILP 584 (1518)
T COG4889 571 RKAKGKKYGYIILP 584 (1518)
T ss_pred HhCcCCccceEEEE
Confidence 85432 36888753
No 167
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=75.11 E-value=20 Score=44.02 Aligned_cols=106 Identities=16% Similarity=0.067 Sum_probs=69.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCC-C-eeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRG-L-VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G-~-ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
+..-+-|.-.-.+|..+...|... . .=.|.+|-.-..|||+-+-++||- ++...+|-+=.|---||-|.|
T Consensus 803 ~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi--------hD~dFNP~dD~QAEDRcHRvG 874 (941)
T KOG0389|consen 803 KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII--------HDIDFNPYDDKQAEDRCHRVG 874 (941)
T ss_pred eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE--------eecCCCCcccchhHHHHHhhC
Confidence 444456776677899999999764 3 446889999999999987776665 344455555667777888888
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCC
Q 002426 329 IDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365 (924)
Q Consensus 329 ~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~ 365 (924)
.-..=+++-+.+..---+.+.++.. .-..|++.+..
T Consensus 875 QtkpVtV~rLItk~TIEE~I~~lA~-~KL~Le~~lt~ 910 (941)
T KOG0389|consen 875 QTKPVTVYRLITKSTIEEGILRLAK-TKLALEADLTE 910 (941)
T ss_pred CcceeEEEEEEecCcHHHHHHHHHH-Hhhhhhhhhcc
Confidence 7677778766654332222333333 33455555443
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.91 E-value=5.8 Score=46.39 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=43.4
Q ss_pred HHHhhCCCeeEEEEcccc--ccccCCCCceEEEecceecCCCCcccC---CHHHHHHHhcccCCCC--CCCccEEEEEeC
Q 002426 268 EELFQRGLVKVVFATETL--AAGINMPARTAVLSSLSKRTASGRIQL---TSNELFQMAGRAGRRG--IDNRGHVVLVQT 340 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tl--a~GINmPa~~VVI~~~~k~dg~~~~pl---s~~ey~Qm~GRAGR~G--~D~~G~vill~~ 340 (924)
-.+|..|..+||+-|+-+ -+--.+-.+.-||. |..|- =-+|+++|.+|+.-.| .-..-.|.++.+
T Consensus 595 R~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf--------YqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilyt 666 (698)
T KOG2340|consen 595 RELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF--------YQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYT 666 (698)
T ss_pred HHHHHhcCceEEEEehhhhhhhhheecceeeEEE--------ecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEee
Confidence 457889999999999864 34455665554444 33333 3478999999986444 223445666666
Q ss_pred CCC
Q 002426 341 PYE 343 (924)
Q Consensus 341 ~~~ 343 (924)
.++
T Consensus 667 KyD 669 (698)
T KOG2340|consen 667 KYD 669 (698)
T ss_pred chh
Confidence 544
No 169
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=74.89 E-value=8.9 Score=47.75 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=58.3
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..+++|.++|+.-|.+.++.+.. +.+.+.-.|+..|||++...|..+...
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~------------------------------l~~~~~i~v~ll~G~~~~~~r~~~~~~ 359 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKK------------------------------LLEPLGIRVALLTGSLKGKERREILEA 359 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHH------------------------------HHhhcCcEEEEEcCCCCHHHHHHHHHH
Confidence 34678888887777776666541 111122358999999999999999999
Q ss_pred hhCCCeeEEEEcccc-ccccCCCCceEEEe
Q 002426 271 FQRGLVKVVFATETL-AAGINMPARTAVLS 299 (924)
Q Consensus 271 F~~G~ikVL~AT~tl-a~GINmPa~~VVI~ 299 (924)
..+|...|+|+|..+ ...++++...+||-
T Consensus 360 l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 360 IASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 999999999999754 44577777776554
No 170
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=73.93 E-value=26 Score=44.23 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 216 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l 216 (924)
.+++.+..+.+ ...|+||-+.|-...+.++..|...++
T Consensus 427 Ai~~ei~~~~~-~GrPVLIgT~SVe~SE~ls~~L~~~gi 464 (939)
T PRK12902 427 AVANETAEMHK-QGRPVLVGTTSVEKSELLSALLQEQGI 464 (939)
T ss_pred HHHHHHHHHHh-CCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 34444444444 456999999999999999999886554
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.30 E-value=56 Score=39.22 Aligned_cols=74 Identities=14% Similarity=0.028 Sum_probs=55.2
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
...+||.++++.-+.+.++.+.. .+...++..||++++.+|..+...
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~---------------------------------~f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKY---------------------------------RFGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHH---------------------------------HhCCcEEEEECCCCHHHHHHHHHH
Confidence 45799999999888777766642 111257889999999999999888
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEE
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVL 298 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI 298 (924)
..+|..+|+|+|..+.. .-++....||
T Consensus 72 ~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred HHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 89999999999986443 3344444444
No 172
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=67.21 E-value=6.5 Score=42.94 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccC-CC-HHHHHHHhc
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV-AN-ADELAGWIG 75 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi-~N-~~e~a~wL~ 75 (924)
+.++||+||+|.+.+ .....-..+..+. ....++||||. .| +.++...+.
T Consensus 134 ~~~~vIvDEaH~~k~--~~s~~~~~l~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 134 KWDRVIVDEAHRLKN--KDSKRYKALRKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp EEEEEEETTGGGGTT--TTSHHHHHHHCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cceeEEEeccccccc--ccccccccccccc-cceEEeeccccccccccccccchh
Confidence 478899999999964 2333333444455 56778899993 34 566665443
No 173
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=66.53 E-value=15 Score=32.79 Aligned_cols=60 Identities=23% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccc
Q 002426 738 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 738 ~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~ 800 (924)
.+.|..+|.||.++ .+|..|+..+++-- +--++-+|..+...+=...++++++|++-.+.
T Consensus 3 ~~~L~~LgAld~~~-~lT~lG~~m~~lPl--~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~ 62 (92)
T smart00847 3 LELLYELGALDDDG-RLTPLGRKMAELPL--DPRLAKMLLAAAELFGCLDEILTIAAMLSVGD 62 (92)
T ss_pred HHHHHHCCCcCCCC-CcCHHHHHHHHCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence 46899999999875 89999999999864 44445555555432114567778877765443
No 174
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=66.20 E-value=6.7 Score=45.02 Aligned_cols=30 Identities=40% Similarity=0.561 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCcccccccCCchhHHHHHhh
Q 002426 346 EECCKLLFAGVEPLVSQFTASYGMVLNLLA 375 (924)
Q Consensus 346 ~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~ 375 (924)
..+.++..+.|+||.|+|..+..|+||+|.
T Consensus 40 ~TF~rL~~a~PE~L~s~f~vthaMlLnvl~ 69 (461)
T PF12029_consen 40 KTFERLIEAEPEPLTSRFRVTHAMLLNVLA 69 (461)
T ss_pred HHHHHHhcCCCCCCccCeeccHHHHHHHHc
Confidence 468899999999999999999999999987
No 175
>PRK05580 primosome assembly protein PriA; Validated
Probab=65.45 E-value=30 Score=43.05 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=53.3
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
.++||.++++.-+.+..+.+.. .+...++..||++++.+|..+....
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~---------------------------------~fg~~v~~~~s~~s~~~r~~~~~~~ 237 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRA---------------------------------RFGAPVAVLHSGLSDGERLDEWRKA 237 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHH---------------------------------HhCCCEEEEECCCCHHHHHHHHHHH
Confidence 4788888888877776665541 0112588999999999999998889
Q ss_pred hCCCeeEEEEccccccccCCCCce-EEEe
Q 002426 272 QRGLVKVVFATETLAAGINMPART-AVLS 299 (924)
Q Consensus 272 ~~G~ikVL~AT~tla~GINmPa~~-VVI~ 299 (924)
.+|..+|+|+|..... +.++... +||+
T Consensus 238 ~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 238 KRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred HcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 9999999999975432 3344444 4444
No 176
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=64.14 E-value=6.5 Score=50.41 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=31.8
Q ss_pred CccEEEEccccccCCCC--chHHHHHHHHhC-CCCccEEEEcccCC--CHHHHHHHhc
Q 002426 23 DVDVIVLDEVHYLSDIS--RGTVWEEIIIYC-PKEVQIICLSATVA--NADELAGWIG 75 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~--RG~v~Eeii~~l-p~~~qiV~LSATi~--N~~e~a~wL~ 75 (924)
..++||+||+|++.... ....+. .+..+ .....+++||||-- +.+++-..|.
T Consensus 272 ~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~La~~~~~~LLLTATP~q~~~~e~falL~ 328 (956)
T PRK04914 272 EWDLLVVDEAHHLVWSEEAPSREYQ-VVEQLAEVIPGVLLLTATPEQLGQESHFARLR 328 (956)
T ss_pred CCCEEEEechhhhccCCCCcCHHHH-HHHHHhhccCCEEEEEcCcccCCcHHHHHhhh
Confidence 56899999999996211 112233 33333 33457899999965 3555544443
No 177
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=62.98 E-value=26 Score=42.06 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred eEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhh-ccceEEEcCCCCHHHHHHHHHHhh
Q 002426 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL-LKGVAAHHAGCLPIWKSFIEELFQ 272 (924)
Q Consensus 194 ~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L-~~GVa~hH~gl~~~~R~~VE~lF~ 272 (924)
+||+++||.-|.++++.+.... ... ...++.++||.+...+. ..++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~------------------------------~~~~~~~~~~i~GG~~~~~q~---~~l~ 148 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLG------------------------------KNLGGLRVAVVYGGVSIRKQI---EALK 148 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHH------------------------------hhcCCccEEEEECCCCHHHHH---HHHh
Confidence 9999999988888777665221 111 23589999998877666 3455
Q ss_pred CCCeeEEEEcc-----ccccc-cCCCCceEEEe
Q 002426 273 RGLVKVVFATE-----TLAAG-INMPARTAVLS 299 (924)
Q Consensus 273 ~G~ikVL~AT~-----tla~G-INmPa~~VVI~ 299 (924)
.| .+|||||+ .+.+| +|+..+.++|.
T Consensus 149 ~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 149 RG-VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred cC-CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 57 99999998 34555 77776665554
No 178
>PRK14873 primosome assembly protein PriA; Provisional
Probab=62.06 E-value=31 Score=42.77 Aligned_cols=63 Identities=24% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhc-cceEEEcCCCCHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~-~GVa~hH~gl~~~~R~~VE~ 269 (924)
.+.+||.++....+..+.+.|.. .+. ..|+.+||++++.+|.....
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~---------------------------------~f~~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRA---------------------------------LLGAGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHH---------------------------------HcCCCcEEEECCCCCHHHHHHHHH
Confidence 34788888888877776666641 011 24899999999999999999
Q ss_pred HhhCCCeeEEEEccccc
Q 002426 270 LFQRGLVKVVFATETLA 286 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla 286 (924)
...+|..+|++.|-.+.
T Consensus 235 ~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV 251 (665)
T ss_pred HHhCCCCcEEEEcceeE
Confidence 99999999999998754
No 179
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=60.13 E-value=79 Score=40.94 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHH
Q 002426 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262 (924)
Q Consensus 183 l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~ 262 (924)
+..|+. ....||||+.-.+.-+-+-++|+..+++ .--+-|.-.-+
T Consensus 1269 LqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgyl----------------------------------Y~RLDg~t~vE 1313 (1958)
T KOG0391|consen 1269 LQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYL----------------------------------YVRLDGNTSVE 1313 (1958)
T ss_pred HHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceE----------------------------------EEEecCCccHH
Confidence 334443 4468999987777666666666533321 11134666778
Q ss_pred HHHHHHHHhhC--CCeeEEEEccccccccCCC-CceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 263 WKSFIEELFQR--GLVKVVFATETLAAGINMP-ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 263 ~R~~VE~lF~~--G~ikVL~AT~tla~GINmP-a~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
+|...++.|.. .....+.+|-.-..|||+- |-||||.+ +.|+. ..+-...+-.||+|++ ..=++|-+.
T Consensus 1314 qRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD-sDwNP--tMDaQAQDrChRIGqt------RDVHIYRLI 1384 (1958)
T KOG0391|consen 1314 QRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD-SDWNP--TMDAQAQDRCHRIGQT------RDVHIYRLI 1384 (1958)
T ss_pred HHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec-CCCCc--hhhhHHHHHHHhhcCc------cceEEEEee
Confidence 99999999987 3467788999999999996 55566652 22321 1233456777888876 234666665
Q ss_pred CC
Q 002426 340 TP 341 (924)
Q Consensus 340 ~~ 341 (924)
+.
T Consensus 1385 Se 1386 (1958)
T KOG0391|consen 1385 SE 1386 (1958)
T ss_pred cc
Confidence 54
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=59.48 E-value=23 Score=43.77 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=40.7
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEcccccc-ccCCCCceEEEe
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA-GINMPARTAVLS 299 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~-GINmPa~~VVI~ 299 (924)
-.++..|||+....|..+.....+|...|+|+|..+-. .+++....+||-
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 36899999999999999999999999999999987654 456666665543
No 181
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=59.15 E-value=37 Score=43.73 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=39.0
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccc-cccCCCCceEEEe
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA-AGINMPARTAVLS 299 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla-~GINmPa~~VVI~ 299 (924)
.|+..||+.+..++..+...++.|.++|+|+|..+. ..+.+....+||-
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 578899999999999999999999999999998543 4566766664443
No 182
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=57.82 E-value=24 Score=44.68 Aligned_cols=71 Identities=11% Similarity=-0.042 Sum_probs=52.3
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
....+.+++.++|+--+.++++.|.... ... ..+.--+. +||.|++.+|+.+
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~------------------e~~---------~~~~~~~~-yh~~l~~~ekee~ 173 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFA------------------EDA---------GSLDVLVV-YHSALPTKEKEEA 173 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHH------------------hhc---------CCcceeee-eccccchHHHHHH
Confidence 3444688888999988888888775321 000 01111233 8999999999999
Q ss_pred HHHhhCCCeeEEEEccccc
Q 002426 268 EELFQRGLVKVVFATETLA 286 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla 286 (924)
++.|.+|..+||++|+-|.
T Consensus 174 le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 174 LERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHhcCCccEEEEeHHHH
Confidence 9999999999999998764
No 183
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=55.94 E-value=77 Score=37.19 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=54.3
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEc--cccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFAT--ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT--~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
-+-|+|+|..|....+.|.+.--.-+|-- -.-...+|+-.-+.||. -+.|-++.-=+|---|.-|-|.-.
T Consensus 667 kL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm--------mDPWWNpaVe~Qa~DRiHRIGQ~r 738 (791)
T KOG1002|consen 667 KLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM--------MDPWWNPAVEWQAQDRIHRIGQYR 738 (791)
T ss_pred EeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe--------ecccccHHHHhhhhhhHHhhcCcc
Confidence 46799999999999999998643333333 33344478888888888 556667776777666666666555
Q ss_pred ccEEEEEeC
Q 002426 332 RGHVVLVQT 340 (924)
Q Consensus 332 ~G~vill~~ 340 (924)
.=.++-++-
T Consensus 739 Pvkvvrf~i 747 (791)
T KOG1002|consen 739 PVKVVRFCI 747 (791)
T ss_pred ceeEEEeeh
Confidence 556665543
No 184
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=54.14 E-value=95 Score=38.60 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhh-CCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLED-CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~-~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
.....+|.|..|+...+-+-..|.. .++ ...-.-|.-+...|...
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~y----------------------------------sylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGY----------------------------------SYLRMDGTTPAALRQKL 589 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCc----------------------------------eEEEecCCCccchhhHH
Confidence 3445899999998887766666542 111 22334566667789999
Q ss_pred HHHhhCCCee--EEEEccccccccCCCC-ceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 268 EELFQRGLVK--VVFATETLAAGINMPA-RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 268 E~lF~~G~ik--VL~AT~tla~GINmPa-~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
...|.++... .|.+|-+-..|+|+-. ..|||- +..-+|+.=.|-.-||=|.|.-..=.+|-+.+
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf---------DPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF---------DPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEE---------CCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 9999987644 5678889999999964 445554 33445666778888888888633333443333
No 185
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=51.25 E-value=36 Score=42.39 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=55.9
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC----cccCCHHHHHHHhcccC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG----RIQLTSNELFQMAGRAG 325 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~----~~pls~~ey~Qm~GRAG 325 (924)
..|+..||||++.+|..+.....+|..+|++-|-.+- =.-++..-.||-+ .-+|..| ..-+...+.-.+-|+-
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLIIvD-EEHD~sYKq~~~prYhARdvA~~Ra~~- 347 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLIIVD-EEHDSSYKQEDGPRYHARDVAVLRAKK- 347 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEEEe-ccccccccCCcCCCcCHHHHHHHHHHH-
Confidence 4789999999999999999999999999999997632 2233444444431 1112111 1234556666655543
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHH
Q 002426 326 RRGIDNRGHVVLVQTPYEGAEECCK 350 (924)
Q Consensus 326 R~G~D~~G~vill~~~~~~~~~~~~ 350 (924)
.+..+++.+.....+.++.
T Consensus 348 ------~~~pvvLgSATPSLES~~~ 366 (730)
T COG1198 348 ------ENAPVVLGSATPSLESYAN 366 (730)
T ss_pred ------hCCCEEEecCCCCHHHHHh
Confidence 2344555554444433333
No 186
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=50.65 E-value=23 Score=30.25 Aligned_cols=30 Identities=17% Similarity=0.479 Sum_probs=28.2
Q ss_pred HHHhCCCCHHHHHHhcCCChhhHHHHHHHH
Q 002426 857 EAWASGLTWREMMMDCALDDGDLARLLRRT 886 (924)
Q Consensus 857 ~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl 886 (924)
.||.+-.||+.|-....|.|+++|..||+-
T Consensus 8 MAweDRtpFeaI~~~fGL~E~eVi~lMR~~ 37 (72)
T TIGR03643 8 MAWEDRTPFEAIEQQFGLSEKEVIKLMRQN 37 (72)
T ss_pred HHHccCCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 689999999999999999999999999974
No 187
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=50.00 E-value=40 Score=44.64 Aligned_cols=68 Identities=9% Similarity=-0.086 Sum_probs=50.2
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..+++|.++|+.-|.++++.+.... .. ...-...++.+|||++...|+.....
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~------------------~~---------~~i~~~~i~~~~Gg~~~~e~~~~~~~ 173 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLA------------------EK---------AGVGTVNIGAYHSRLPTKEKKEFMER 173 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHH------------------Hh---------cCCceeeeeeecCCCCHHHHHHHHHH
Confidence 4579999999999988877765211 00 00001136678999999999988889
Q ss_pred hhCCCeeEEEEcccc
Q 002426 271 FQRGLVKVVFATETL 285 (924)
Q Consensus 271 F~~G~ikVL~AT~tl 285 (924)
+.+|..+|||+|+-.
T Consensus 174 l~~~~~dIlV~Tp~r 188 (1171)
T TIGR01054 174 IENGDFDILITTTMF 188 (1171)
T ss_pred HhcCCCCEEEECHHH
Confidence 999999999999854
No 188
>PRK14701 reverse gyrase; Provisional
Probab=49.26 E-value=54 Score=44.87 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=52.5
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
....+||.++|+.-+.+.++.+.... .. ..+.-.++++|||++...+..+.+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~------------------~~----------~~~~v~v~~~~g~~s~~e~~~~~~ 172 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFC------------------EK----------ANLDVRLVYYHSNLRKKEKEEFLE 172 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHH------------------hh----------cCCceeEEEEeCCCCHHHHHHHHH
Confidence 34579999999999988888775311 00 001125688999999999999999
Q ss_pred HhhCCCeeEEEEccccc
Q 002426 270 LFQRGLVKVVFATETLA 286 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla 286 (924)
.+.+|..+||++|+-+.
T Consensus 173 ~l~~g~~dILV~TPgrL 189 (1638)
T PRK14701 173 RIENGDFDILVTTAQFL 189 (1638)
T ss_pred HHhcCCCCEEEECCchh
Confidence 99999999999998644
No 189
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=49.01 E-value=25 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.478 Sum_probs=28.2
Q ss_pred HHHhCCCCHHHHHHhcCCChhhHHHHHHHH
Q 002426 857 EAWASGLTWREMMMDCALDDGDLARLLRRT 886 (924)
Q Consensus 857 ~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl 886 (924)
.||.+-.||+.|-...+|.|.++|..||+-
T Consensus 7 MAweDRtpFeaI~~qfGl~E~eVi~lMR~~ 36 (73)
T PF10985_consen 7 MAWEDRTPFEAIERQFGLSEKEVIKLMRKE 36 (73)
T ss_pred HHHccCCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 689999999999999999999999999974
No 190
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=47.61 E-value=57 Score=25.41 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=36.0
Q ss_pred CCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 002426 848 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 891 (924)
Q Consensus 848 ~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~ 891 (924)
+.+.-..++..|+.|.+..+|.+..++..+.+-+.++|+..-|+
T Consensus 4 l~~~e~~i~~~~~~g~s~~eia~~l~is~~tv~~~~~~~~~kl~ 47 (58)
T smart00421 4 LTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLG 47 (58)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 33444557777899999999999999999999999998865553
No 191
>PRK10689 transcription-repair coupling factor; Provisional
Probab=46.77 E-value=50 Score=43.65 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=38.8
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEcccc-ccccCCCCce-EEEecc
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL-AAGINMPART-AVLSSL 301 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tl-a~GINmPa~~-VVI~~~ 301 (924)
.|+.++++.+..++..+....++|.++|||+|.-+ ...+++.... +||+-.
T Consensus 679 ~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEech
Confidence 57789999999999998888999999999999744 3345565555 455533
No 192
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=46.49 E-value=65 Score=31.41 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 728 PSGWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 728 ~~~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
+.-...--++++-|.+.|||... + ..+|.+|+.+.+--. -.+.+-+...+|++|+++|++++...+
T Consensus 65 ~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~~~~---~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 65 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCH---QLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHHHHH---HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 33445566888999999999642 1 278999997753211 112234566788999999999887654
No 193
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=45.43 E-value=43 Score=42.04 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=62.5
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||-+.|-...+.+.+.|...++...- =.|-+| ..+=++|-.
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~V------------------------------LNAk~h----~~EA~Iia~ 473 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNV------------------------------LNAKNH----AREAEIIAQ 473 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCcee------------------------------eccccH----HHHHHHHhh
Confidence 4569999999999999988888755542100 012233 222223322
Q ss_pred HhhCCCeeEEEEccccccccCCCCce-----------EEEecceecCCCCcccCCHHHHH-HHhcccCCCCCCCccEEEE
Q 002426 270 LFQRGLVKVVFATETLAAGINMPART-----------AVLSSLSKRTASGRIQLTSNELF-QMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~-----------VVI~~~~k~dg~~~~pls~~ey~-Qm~GRAGR~G~D~~G~vil 337 (924)
.-+.| -|-+||+-+.+|-||-.-- .||. +. --.+..+- |.-|||||-| ..|.+-+
T Consensus 474 AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIg-TE--------RhESRRIDnQLRGRsGRQG--DpG~S~F 540 (822)
T COG0653 474 AGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIG-TE--------RHESRRIDNQLRGRAGRQG--DPGSSRF 540 (822)
T ss_pred cCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEe-cc--------cchhhHHHHHhhcccccCC--Ccchhhh
Confidence 22333 4778999999999984322 1222 11 12233444 8899999999 6777765
Q ss_pred EeC
Q 002426 338 VQT 340 (924)
Q Consensus 338 l~~ 340 (924)
+.+
T Consensus 541 ~lS 543 (822)
T COG0653 541 YLS 543 (822)
T ss_pred hhh
Confidence 554
No 194
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=44.84 E-value=43 Score=42.60 Aligned_cols=66 Identities=21% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccc
Q 002426 732 KEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 732 ~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~ 800 (924)
..+.+-+..|+.||+||+++ .+|..|+..+++-. + --++-+|..+.-.+-..-.+||.++|+..|.
T Consensus 384 ~~~~~A~~~L~~lgald~~g-~lT~~G~~m~~lp~-~-Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 384 AALAAAKRLLQQLGALDGQG-RLTARGRKMAALGN-D-PRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HHHHHHHHHHHHCCCCCCCC-CcCHHHHHHHhcCC-c-hHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 34566678999999999885 89999999999964 4 4445555444322311113788888877765
No 195
>PRK04217 hypothetical protein; Provisional
Probab=43.88 E-value=69 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHh-CCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Q 002426 848 LDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 895 (924)
Q Consensus 848 ~~~~l~~~v~~Wa-~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~ 895 (924)
+...--+++..|. .|.|+.+|.+..++..+.+-+.++|....|++.-.
T Consensus 43 Lt~eereai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~ 91 (110)
T PRK04217 43 MTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLV 91 (110)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 6666678888887 99999999999999999999999999999987643
No 196
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=39.95 E-value=72 Score=32.07 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002426 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 481 (924)
Q Consensus 423 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 481 (924)
.+..+++.++.++++++..-.. .++|.+|+++++++.+.+.+++++.+..
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~---------qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISA---------QDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-T---------TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887764221 3589999999999998888887766554
No 197
>PF13518 HTH_28: Helix-turn-helix domain
Probab=39.38 E-value=64 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHH
Q 002426 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888 (924)
Q Consensus 854 ~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~e 888 (924)
.+|..+.+|.|..++++.-++....+-+|+++..+
T Consensus 4 ~iv~~~~~g~s~~~~a~~~gis~~tv~~w~~~y~~ 38 (52)
T PF13518_consen 4 QIVELYLEGESVREIAREFGISRSTVYRWIKRYRE 38 (52)
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence 56777889999999999999999999999998875
No 198
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=39.30 E-value=1.3e+02 Score=39.30 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHH-hhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC--Cc
Q 002426 256 HAGCLPIWKSFIEEL-FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID--NR 332 (924)
Q Consensus 256 H~gl~~~~R~~VE~l-F~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D--~~ 332 (924)
|.......+.....- +....+++||-++-+-.|.|-|..++..- +.|+.-...+|-+-|+-|.-.+ +.
T Consensus 573 ~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv---------DK~Lk~H~L~QAisRtNR~~~~~K~~ 643 (962)
T COG0610 573 HAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV---------DKPLKYHNLIQAISRTNRVFPGKKKF 643 (962)
T ss_pred hHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe---------ccccccchHHHHHHHhccCCCCCCCC
Confidence 444444444444443 45678999999999999999999887765 3678888899999999998766 56
Q ss_pred cEEEEEeCCCCCHHHHHHHHhCCC
Q 002426 333 GHVVLVQTPYEGAEECCKLLFAGV 356 (924)
Q Consensus 333 G~vill~~~~~~~~~~~~l~~~~~ 356 (924)
|.++-+.+-.++...+.++.....
T Consensus 644 G~IVDf~gl~e~l~~Al~~Y~~~~ 667 (962)
T COG0610 644 GLIVDFRGLKEALKKALKLYSNEG 667 (962)
T ss_pred cEEEECcchHHHHHHHHHHhhccc
Confidence 888888776666666666665554
No 199
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=39.15 E-value=80 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHH
Q 002426 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888 (924)
Q Consensus 854 ~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~e 888 (924)
.+++.|+.|.+..+|++..++.++.+-+.++|+..
T Consensus 7 ~i~~~~~~~~s~~eia~~l~~s~~tv~~~~~~~~~ 41 (57)
T cd06170 7 EVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMR 41 (57)
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999988744
No 200
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=38.37 E-value=46 Score=42.32 Aligned_cols=63 Identities=24% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccc
Q 002426 733 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 733 ~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~ 800 (924)
.+.+-+..|+.||.||+++ .+|..|+..+++-- +--++-||..+.- +...+.|+.++++..+.
T Consensus 382 ~i~~a~~~L~~lgald~~~-~lT~~G~~~~~lp~--~p~l~~~ll~~~~--~~~~~~~~~iaa~ls~~ 444 (819)
T TIGR01970 382 ALAAARQLLQRLGALDAQG-RLTAHGKAMAALGC--HPRLAAMLLSAHS--TGLAALACDLAALLEER 444 (819)
T ss_pred HHHHHHHHHHHCCCCCCCC-CcCHHHHHHHhcCC--CHHHHHHHHHhhh--cCCHHHHHHHHHHHcCC
Confidence 4556677899999999886 89999999999974 4445555554432 22334455555555443
No 201
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=37.99 E-value=73 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHHHHHH-hCCCCHHHHHHhcCCChhhHHHHHHHHHHHH
Q 002426 852 FSGMVEAW-ASGLTWREMMMDCALDDGDLARLLRRTIDLL 890 (924)
Q Consensus 852 l~~~v~~W-a~G~~f~~i~~~t~l~eGdivR~~rRl~elL 890 (924)
--.++..+ ..|.+..+|.+..++.++.+-+++.|...-|
T Consensus 15 ~~~~~~~~~~~~~~~~~ia~~~~~s~~~i~~~~~~~~~~l 54 (55)
T cd06171 15 EREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54 (55)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 33455444 4999999999999999999999999876654
No 202
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=37.86 E-value=1.2e+02 Score=38.55 Aligned_cols=134 Identities=15% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE--Ec
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA--HH 256 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~--hH 256 (924)
++++|.+..+- ...+|||..|-..-+.+-.+|....-.... + ...+... ...-...+|.-+ +-
T Consensus 1131 LleIL~mceeI-GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~-----------~-~d~~~~~--~~eGkW~~GkDyyriD 1195 (1567)
T KOG1015|consen 1131 LLEILRMCEEI-GDKLLVFSQSLISLDLIEDFLELVSREGKE-----------D-KDKPLIY--KGEGKWLRGKDYYRLD 1195 (1567)
T ss_pred HHHHHHHHHHh-cceeEEeecccchhHHHHHHHHhhcccCcc-----------c-ccccccc--ccccceecCCceEEec
Confidence 34444444433 347899998877776666666421110000 0 0000000 000112334443 46
Q ss_pred CCCCHHHHHHHHHHhhCC----CeeEEEEccccccccCCCCce-EEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 257 AGCLPIWKSFIEELFQRG----LVKVVFATETLAAGINMPART-AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G----~ikVL~AT~tla~GINmPa~~-VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
|......|..+-..|.+- .--.||+|-.-+.||||-|.+ |||-+.+ |+ |+-=+|-+=|+=|.|.-.
T Consensus 1196 Gst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas-WN--------PSyDtQSIFRvyRfGQtK 1266 (1567)
T KOG1015|consen 1196 GSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDAS-WN--------PSYDTQSIFRVYRFGQTK 1266 (1567)
T ss_pred CcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecc-cC--------CccchHHHHHHHhhcCcC
Confidence 888889999999999873 234799999999999997655 5554322 22 334467777888888656
Q ss_pred ccEEE
Q 002426 332 RGHVV 336 (924)
Q Consensus 332 ~G~vi 336 (924)
.-++|
T Consensus 1267 PvyiY 1271 (1567)
T KOG1015|consen 1267 PVYIY 1271 (1567)
T ss_pred ceeeh
Confidence 66666
No 203
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=36.54 E-value=3e+02 Score=36.91 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHcCcccCCCC--ccChhhHHHHhhhCCchHHHHHHHHhcc-cCCCCHHhHHHHHhhhhccc
Q 002426 733 EFLRISNVIHETRALDINTQ--VIFPLGETAAAIRGENELWLAMVLRNKI-LLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 733 ~f~~~~~VL~~lgyld~~~~--~vt~kGr~a~~I~~~~ELlltell~~g~-~~~L~p~~lAAllS~~v~e~ 800 (924)
...+-+..|..||.||.++. .+|..|+..+++-- +--++-+|..|. |+.+ .+++.++|++-.++
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPl--dPrlarmLl~a~~~gcl--~e~l~IaA~Ls~~d 516 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPV--DPRLARMLLEAHRLGCL--QEVLIIASALSIQD 516 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCC--ChHHHHHHHHhhhcCCH--HHHHHHHHHHcCCC
Confidence 35567789999999997742 69999999999985 345566665554 3433 34555555553333
No 204
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=36.45 E-value=1.2e+02 Score=29.43 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=46.4
Q ss_pred hccccHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 726 IEPSGWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 726 ~~~~~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
....-.....++++-|.+.|||... + ..+|.+|+...+-- . - ..+-+...+|.+++++++..+...+
T Consensus 55 ~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~--~-~-~~~~~~~~~~~~l~~ee~~~l~~~l 130 (144)
T PRK03573 55 AIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEV--E-A-VINKTRAEILHGISAEEIEQLITLI 130 (144)
T ss_pred HhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHHH--H-H-HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3334445666899999999999642 1 26999999877632 1 1 2233555578899999988887765
Q ss_pred h
Q 002426 797 V 797 (924)
Q Consensus 797 v 797 (924)
-
T Consensus 131 ~ 131 (144)
T PRK03573 131 A 131 (144)
T ss_pred H
Confidence 3
No 205
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=34.34 E-value=91 Score=24.31 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=32.1
Q ss_pred HHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhh
Q 002426 856 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892 (924)
Q Consensus 856 v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Q 892 (924)
...|-.|.|+.||-+.-++.+|.+=+..+|..+-||+
T Consensus 14 ~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 14 RLRYFEGLTLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp HHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999998887764
No 206
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=32.96 E-value=34 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHH
Q 002426 854 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 887 (924)
Q Consensus 854 ~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~ 887 (924)
.++..+..|.|..+|++...+....+-||++|-.
T Consensus 9 ~ii~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 9 QIIRLLREGWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp -HHHHHHHT--HHHHHHHHTS-HHHHHHHHT---
T ss_pred HHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 4667777799999999999999999999999854
No 207
>PF13173 AAA_14: AAA domain
Probab=32.84 E-value=34 Score=32.53 Aligned_cols=37 Identities=24% Similarity=0.561 Sum_probs=24.0
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEcccCC
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVA 65 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LSATi~ 65 (924)
+-.+|+|||+|++- .|...+..+ .++.++++.+-...
T Consensus 61 ~~~~i~iDEiq~~~------~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP------DWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc------cHHHHHHHHHHhccCceEEEEccchH
Confidence 56899999999984 355555443 23567776554433
No 208
>PRK00254 ski2-like helicase; Provisional
Probab=32.02 E-value=3.9e+02 Score=33.65 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHHHHhHcCcccCC---CCccChhhHHHHhhhCCchHHHHHHHHhccc---CCCCHHhHHHHHhhhhccccccccc
Q 002426 733 EFLRISNVIHETRALDIN---TQVIFPLGETAAAIRGENELWLAMVLRNKIL---LDLKPAQLAAVCASLVSEGIKVRLW 806 (924)
Q Consensus 733 ~f~~~~~VL~~lgyld~~---~~~vt~kGr~a~~I~~~~ELlltell~~g~~---~~L~p~~lAAllS~~v~e~~~~r~~ 806 (924)
.....+.-|.+-|+|+.+ ...+|..|++++..+-.-+ .++.+.+.+- .+.+ ..+++-.+..-.
T Consensus 456 ~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~--t~~~~~~~l~~~~~~~~---~~~~l~~~~~~~------ 524 (720)
T PRK00254 456 KAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPL--TAKKFKDAFPKIEKNPN---PLGIFQLIASTP------ 524 (720)
T ss_pred HHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHH--HHHHHHHHHHhhccCCC---HHHHHHHhhCCc------
Confidence 445677889999999642 3578999999998875322 2233322221 1223 233444332211
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-------CCchHHHHHHHHhCCCCHHHHHHhcCCChhhH
Q 002426 807 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC-------LDSQFSGMVEAWASGLTWREMMMDCALDDGDL 879 (924)
Q Consensus 807 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~-------~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdi 879 (924)
|....+.. ..+... +.+....+.. .....++.+.. ......-+.++|.+|.+...+++.-.+..||+
T Consensus 525 e~~~~~~r-~~e~~~----l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~ 598 (720)
T PRK00254 525 DMTPLNYS-RKEMED----LLDEAYEMED-RLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDL 598 (720)
T ss_pred cccccCcc-hhhHHH----HHHHHHhhcc-cccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHH
Confidence 11111111 112111 1111111110 00011222111 12234567799999999999999888999999
Q ss_pred HHHHHHHHHHHhhcCCCCC---CChHHHHHHHHHHhccCCCccccC
Q 002426 880 ARLLRRTIDLLAQIPKLPD---VDQRLQKNAVDASNVMDRPPISEL 922 (924)
Q Consensus 880 vR~~rRl~elL~Ql~~~~~---~~~~L~~~a~~A~~~i~R~~v~~~ 922 (924)
-+.+.+..-|+.=+...+. ....+.....+-...|.=|+..++
T Consensus 599 ~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~ 644 (720)
T PRK00254 599 YRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREEL 644 (720)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHH
Confidence 6666555555544433321 112333333344444444444443
No 209
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=31.21 E-value=50 Score=37.53 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.5
Q ss_pred CCCCCccEEEEccccccCC
Q 002426 19 SGLFDVDVIVLDEVHYLSD 37 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D 37 (924)
......++||+||+|.|.+
T Consensus 79 ~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 79 KEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ccCCcCCEEEEehhHhhhh
Confidence 3467899999999999986
No 210
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=28.84 E-value=85 Score=40.88 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=32.9
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCC--CHHHHHHHhc
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA--NADELAGWIG 75 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~--N~~e~a~wL~ 75 (924)
..++||+||+|++.. .....-..+..+... ..++||+|.- |..++-..|.
T Consensus 291 ~W~~VIvDEAHrIKN--~~Sklskalr~L~a~-~RLLLTGTPlqNnl~ELwsLL~ 342 (1033)
T PLN03142 291 SWRYIIIDEAHRIKN--ENSLLSKTMRLFSTN-YRLLITGTPLQNNLHELWALLN 342 (1033)
T ss_pred CCCEEEEcCccccCC--HHHHHHHHHHHhhcC-cEEEEecCCCCCCHHHHHHHHh
Confidence 357899999999974 233344455556543 4578999943 4677766554
No 211
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=28.34 E-value=1.5e+02 Score=36.29 Aligned_cols=60 Identities=12% Similarity=-0.019 Sum_probs=46.6
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
..+||.++++.-+..-+..|...+ -.++++|+++...++..++...
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~g----------------------------------i~~~~~~s~~~~~~~~~~~~~l 99 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAG----------------------------------VAAAYLNSTLSAKEQQDIEKAL 99 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcC----------------------------------CcEEEEeCCCCHHHHHHHHHHH
Confidence 468888898877665555554322 1468899999999999999999
Q ss_pred hCCCeeEEEEcccc
Q 002426 272 QRGLVKVVFATETL 285 (924)
Q Consensus 272 ~~G~ikVL~AT~tl 285 (924)
..|.+++|++|+--
T Consensus 100 ~~~~~~il~~tpe~ 113 (591)
T TIGR01389 100 VNGELKLLYVAPER 113 (591)
T ss_pred hCCCCCEEEEChhH
Confidence 99999999998653
No 212
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.02 E-value=36 Score=42.50 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=23.0
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHh---CCCCccEEEEc
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIY---CPKEVQIICLS 61 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~---lp~~~qiV~LS 61 (924)
..+++||||+|+|.+.. +..++.. -+.++.||+.+
T Consensus 119 r~KVIIIDEah~LT~~A----~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA----FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHHHhcCCCeEEEEEE
Confidence 56899999999997532 3333333 35567777655
No 213
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=27.37 E-value=60 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=21.8
Q ss_pred cEEEEccccccCCCCchHHHHHHHHhC-CCCccEEEEc
Q 002426 25 DVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLS 61 (924)
Q Consensus 25 ~~VVlDE~H~l~D~~RG~v~Eeii~~l-p~~~qiV~LS 61 (924)
.+||+||+|++. ....++.+.... ...+++|+.+
T Consensus 89 ~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEE
T ss_pred eEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEE
Confidence 689999999985 245555554443 3456655544
No 214
>COG5570 Uncharacterized small protein [Function unknown]
Probab=26.89 E-value=2e+02 Score=23.10 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCc-hhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002426 672 YKEQRTKVARLKKKIARTEGFK-EYKKIVDTVKFTEEKIKRLKARSKRLTKR 722 (924)
Q Consensus 672 ~~~~~~~~~~l~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 722 (924)
+..+.++-..|++++...-.++ +.+..+. ..-+|+.+|+.+|+.|+.+
T Consensus 7 l~eL~kkHg~le~ei~ea~n~Ps~dd~~i~---eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 7 LAELEKKHGNLEREIQEAMNSPSSDDLAIR---ELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHhhchHHHHHHHHhcCCCcchHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 3455667777777777666555 2232222 2457888899998888754
No 215
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=26.42 E-value=86 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=23.6
Q ss_pred HHHHHHHHHhC-----CCCCeEEEEcChHhHHHHHHHhhh
Q 002426 179 VIDTLWHLRSR-----DMLPAIWFIFNRRGCDAAVQYLED 213 (924)
Q Consensus 179 ~~~~l~~l~~~-----~~~p~IVF~~Sr~~ce~~a~~L~~ 213 (924)
++.++..|... +..-|||.++||.-+-.....|..
T Consensus 124 lvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k 163 (758)
T KOG0343|consen 124 LVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK 163 (758)
T ss_pred hHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH
Confidence 34445555433 456799999999988777776653
No 216
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.38 E-value=1.8e+02 Score=34.51 Aligned_cols=60 Identities=8% Similarity=-0.035 Sum_probs=46.6
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
..+||.++++.-+...+..|...++ .+++.+++....++..+....
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi----------------------------------~~~~l~~~~~~~~~~~i~~~~ 97 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGI----------------------------------PATFLNSSQSKEQQKNVLTDL 97 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHHHHHHH
Confidence 4799999999877666555543221 356788899999888888888
Q ss_pred hCCCeeEEEEcccc
Q 002426 272 QRGLVKVVFATETL 285 (924)
Q Consensus 272 ~~G~ikVL~AT~tl 285 (924)
..|.++++++|+-.
T Consensus 98 ~~~~~~il~~TPe~ 111 (470)
T TIGR00614 98 KDGKIKLLYVTPEK 111 (470)
T ss_pred hcCCCCEEEECHHH
Confidence 99999999999853
No 217
>PRK01172 ski2-like helicase; Provisional
Probab=25.25 E-value=6.1e+02 Score=31.57 Aligned_cols=125 Identities=11% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHhHcCcccCCC-CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCC
Q 002426 734 FLRISNVIHETRALDINT-QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI 812 (924)
Q Consensus 734 f~~~~~VL~~lgyld~~~-~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~ 812 (924)
....++-|.+.|+|+.++ ..+|..|++++..+-.= -.++.+.+.+=...+...+-.++|.. .|- .+
T Consensus 446 v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~--~t~~~~~~~l~~~~~~~~~l~~~~~~-~e~----------~~ 512 (674)
T PRK01172 446 IESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDP--ESALILKSAFDHDYDEDLALYYISLC-REI----------IP 512 (674)
T ss_pred HHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCH--HHHHHHHHHhhccCCHHHHHHHhhcC-ccc----------cc
Confidence 347788899999998542 36899999999988533 23344444332333444444444321 111 11
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHH
Q 002426 813 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 883 (924)
Q Consensus 813 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~ 883 (924)
....+. ..+.+++..+ +..-.........-+.++|-++.+..+|.+.=.+..||+-+++
T Consensus 513 ~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~ 571 (674)
T PRK01172 513 ANTRDD-----YYAMEFLEDI-------GVIDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARA 571 (674)
T ss_pred cccchH-----HHHHHHHHHh-------ccccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHH
Confidence 111111 1112222222 2110001223445678999999999999888889999887764
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=25.23 E-value=53 Score=35.05 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCCCccEEEEccccccCCCCc-hHHHHHHHHhCCCCccEEEEcccCCC
Q 002426 20 GLFDVDVIVLDEVHYLSDISR-GTVWEEIIIYCPKEVQIICLSATVAN 66 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~R-G~v~Eeii~~lp~~~qiV~LSATi~N 66 (924)
.+.+++++|+|++|.+..... ...+-.++..+...-..+++++|.++
T Consensus 94 ~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 94 NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 366789999999998854321 11122233333333344666666553
No 219
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.62 E-value=3e+02 Score=25.60 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 002426 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 726 (924)
Q Consensus 670 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ 726 (924)
+.+...++++..++.++...|.+.+..+ ..-+..+++.+++.+..+++.-
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~-------L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHD-------LQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHH-------HHHHHHHHHhHHHHHHHHHHHH
Confidence 4445678899999999999998765443 4456666777777766666553
No 220
>PRK02362 ski2-like helicase; Provisional
Probab=24.55 E-value=3.2e+02 Score=34.48 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC-ChHHHHHHHHHHhccCCCcccc
Q 002426 853 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV-DQRLQKNAVDASNVMDRPPISE 921 (924)
Q Consensus 853 ~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~-~~~L~~~a~~A~~~i~R~~v~~ 921 (924)
.-+.++|-++.++.+|.+.=.+..||+-.......-++..+...+.. ...++..+.+-...|.-|+..+
T Consensus 581 ~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~~l~~~l~~gv~~~ 650 (737)
T PRK02362 581 ALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASELDLDLARAARELEKRVEYGVREE 650 (737)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhCCCHH
Confidence 45679999999999999988899999966666665554443333211 2345555555555555555444
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=24.27 E-value=61 Score=34.41 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHH----HHhC-CCCccEEEEcccCC
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEI----IIYC-PKEVQIICLSATVA 65 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eei----i~~l-p~~~qiV~LSATi~ 65 (924)
.+.+.+++|+||+|.+... ..|++. +..+ ....++|.+|++.+
T Consensus 88 ~~~~~dlLilDDi~~~~~~---~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGN---EEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred hcccCCEEEEeChhhhcCC---hHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4667899999999998532 234433 2222 23456677777764
No 222
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.26 E-value=1.3e+02 Score=28.82 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCC---------ChHHHHHHHHHHhcc
Q 002426 875 DDGDLARLLRRTIDLLAQIPKLPDV---------DQRLQKNAVDASNVM 914 (924)
Q Consensus 875 ~eGdivR~~rRl~elL~Ql~~~~~~---------~~~L~~~a~~A~~~i 914 (924)
-.++|+||+|+-....+++.+-.+. +..++.+|++++++|
T Consensus 69 G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 69 GNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred CCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 4589999999999888888665442 467888888888876
No 223
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=24.10 E-value=50 Score=40.53 Aligned_cols=52 Identities=17% Similarity=0.407 Sum_probs=36.8
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHhC-CCCccEEEEcccCCCHHHHHHHhcccCC
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQIHG 79 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-p~~~qiV~LSATi~N~~e~a~wL~~~~~ 79 (924)
..+++|+|||+.+.+ ..|+.++=.+ ..+.++|++|-|-+ .+.--.||...++
T Consensus 352 tfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns-~~~sTSFL~nLk~ 404 (738)
T PHA03368 352 DFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNT-GKASTSFLYNLKG 404 (738)
T ss_pred cccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCC-CccchHHHHhhcC
Confidence 799999999999976 5666665433 35889999998854 2344456665544
No 224
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=24.04 E-value=93 Score=38.67 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCC-CHHHHHHHhc
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA-NADELAGWIG 75 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~-N~~e~a~wL~ 75 (924)
.+..+||+||.|||-+ ++..-..-+..++.+.++++..-.+- |..|+-..|.
T Consensus 523 ~~~n~viyDEgHmLKN--~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~ 575 (941)
T KOG0389|consen 523 QKFNYVIYDEGHMLKN--RTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLA 575 (941)
T ss_pred ccccEEEecchhhhhc--cchHHHHHhccccccceEEeeCCcccccHHHHHHHHH
Confidence 4688999999999975 33322223445566666554444444 4677666554
No 225
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=23.71 E-value=3e+02 Score=24.99 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=46.4
Q ss_pred hhccccHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhH
Q 002426 725 QIEPSGWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 789 (924)
Q Consensus 725 ~~~~~~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~l 789 (924)
.....-...-.++++-|.+-|||... + ..+|.+|+-+.+-... ..+-+...+|.+|+++++
T Consensus 44 ~~l~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~ 113 (126)
T COG1846 44 ERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQLLP----AAQELLAEILAGLSEEEL 113 (126)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHHhcc----HHHHHHHHhccCCCHHHH
Confidence 33344455667889999999999531 1 2799999998887765 777788889999999995
No 226
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.32 E-value=44 Score=41.10 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEc
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLS 61 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LS 61 (924)
..-+++||||+|+|... .+..++..| |.++.||+.|
T Consensus 123 gr~KViIIDEah~Ls~~----AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH----AFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHH----HHHHHHHhhccCCCCceEEEEe
Confidence 45689999999999753 233344444 4567676654
No 227
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=22.97 E-value=87 Score=40.32 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=0.0
Q ss_pred EEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC
Q 002426 26 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 66 (924)
Q Consensus 26 ~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N 66 (924)
+||+||.|.+. .-+..|+.+ ..+.+.. ++.+|||.++
T Consensus 204 ivIiDEPh~~~--~~~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFP--RDNKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCC--cchHHHHHH-HhcCccc-EEEEeeecCC
No 228
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.95 E-value=92 Score=39.13 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=36.7
Q ss_pred cEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCC
Q 002426 25 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 65 (924)
Q Consensus 25 ~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~ 65 (924)
=|+|+|.-|++.|+.--.-+.-.|.+.|+++++|+.|=+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 58999999999998777778888999999999999998876
No 229
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.78 E-value=3e+02 Score=33.96 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=72.1
Q ss_pred HHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCCC
Q 002426 734 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 813 (924)
Q Consensus 734 f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~ 813 (924)
+++-+-=|-.||.|+..| .+|..|+--.+..- |.-|--.+|..--+.- ..|++.++|.|-.....+|+++......
T Consensus 745 ~~~sly~Lw~LGAl~~~g-~LT~lG~~MvefpL-DP~lsKmll~a~~~Gc--~dEilsIvSmLSvp~VF~rpker~eead 820 (1042)
T KOG0924|consen 745 LLNSLYQLWTLGALDNTG-QLTPLGRKMVEFPL-DPPLSKMLLMAARMGC--SDEILSIVSMLSVPAVFYRPKEREEEAD 820 (1042)
T ss_pred HHHHHHHHHHhhccccCC-ccchhhHHhhhCCC-CchHHHHHHHHhccCc--HHHHHHHHHHhcccceeeccccchhhhh
Confidence 334444566799999875 89999999999876 4444444444333332 3577888887765544555543322111
Q ss_pred -------CC-cHHH-------------------------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCch
Q 002426 814 -------EP-STTV-------------------------INVINVLDEHRSSFLELQEKHGVEIPCCLDSQ 851 (924)
Q Consensus 814 -------~~-~~~l-------------------------~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~ 851 (924)
.| +..| ..++.+.+++.+.|.+++++.++++...-+.+
T Consensus 821 ~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwd 891 (1042)
T KOG0924|consen 821 AAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWD 891 (1042)
T ss_pred hHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHH
Confidence 01 1111 34667889999999999999999987764433
No 230
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.32 E-value=50 Score=39.64 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEc
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LS 61 (924)
..-+++||||||+|....+.. +-.++..-|+++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~na-LLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNA-LLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHH-HHHHHhccCCCeEEEEEE
Confidence 356899999999997533222 222333346677777643
No 231
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=21.33 E-value=4.4e+02 Score=31.05 Aligned_cols=73 Identities=16% Similarity=0.046 Sum_probs=46.1
Q ss_pred CeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHhh
Q 002426 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 272 (924)
Q Consensus 193 p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~ 272 (924)
.+||.++|+.-|..+.+.+... ...+...+...+||.+...+... -
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~------------------------------~~~~~~~~~~~~gg~~~~~~~~~----l 122 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDY------------------------------SKYLNIRSLVVFGGVSINPQMMK----L 122 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHH------------------------------hccCCCEEEEEECCcCHHHHHHH----H
Confidence 5899999999988877766421 11122245667888876543221 1
Q ss_pred CCCeeEEEEccc------cccccCCCCceEEEe
Q 002426 273 RGLVKVVFATET------LAAGINMPARTAVLS 299 (924)
Q Consensus 273 ~G~ikVL~AT~t------la~GINmPa~~VVI~ 299 (924)
.+...|+|||+- ....+++....+||-
T Consensus 123 ~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred cCCCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 367899999962 234456777775554
No 232
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=21.32 E-value=5.2e+02 Score=25.77 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHh
Q 002426 675 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIH 742 (924)
Q Consensus 675 ~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~ 742 (924)
..+++..+.+.+.+.. -+..+.|+++|.++++.+-++++..+....-.-.-.+.||-
T Consensus 49 ~~~ei~dmKqelnavs-----------~qD~fAkwaRlnRKi~kl~~ele~qs~n~~~q~~~~K~vlS 105 (175)
T KOG4253|consen 49 KVAEIQDMKQELNAVS-----------MQDNFAKWARLNRKINKLDKELETQSKNKTAQAHLHKWVLS 105 (175)
T ss_pred HHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655422 12268999999999999999987764443222223334444
No 233
>PF12246 MKT1_C: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022039 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the C-terminal region of MKT1.
Probab=21.27 E-value=64 Score=34.75 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHhHcCcccCCCCccChhhHHHHhhhCC--------chHHHHHHHHhcccCCC
Q 002426 739 NVIHETRALDINTQVIFPLGETAAAIRGE--------NELWLAMVLRNKILLDL 784 (924)
Q Consensus 739 ~VL~~lgyld~~~~~vt~kGr~a~~I~~~--------~ELlltell~~g~~~~L 784 (924)
|.|.=+||+++. ..+|.-|+++...... .=+++-|+|+.|+++.=
T Consensus 1 R~L~l~Gyi~~~-~~lT~wGk~L~~~~~~~~~~~~~E~~ll~lELlR~g~L~~~ 53 (243)
T PF12246_consen 1 RFLELRGYIDKS-HELTPWGKALAKALKSLKPNDLQEALLLLLELLRFGVLTLN 53 (243)
T ss_pred CchhHHhHhcCC-CCcCHHHHHHHHHHhccCchhhhhHHHHHHHHHHcCCcCCC
Confidence 357789999976 4899999999887743 23889999999999865
No 234
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.02 E-value=4.4e+02 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccH
Q 002426 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 731 (924)
Q Consensus 670 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~ 731 (924)
......+.++.++++++.+...- + .|.|+.+|++++..+++++++.+....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~q---D--------eFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQ---D--------EFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TT---T--------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888887775431 1 366677777777777777766544433
No 235
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.79 E-value=8.3e+02 Score=30.30 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=78.4
Q ss_pred HHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhH---HHHHhhhhcccccccccCCCC
Q 002426 734 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL---AAVCASLVSEGIKVRLWKNNS 810 (924)
Q Consensus 734 f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~l---AAllS~~v~e~~~~r~~~~~~ 810 (924)
..+-++.|.-||.|+..| .+|-.||.-||.-. |.-+--.++-++... ..++| ||++|+.-.
T Consensus 654 L~~aLE~LyaLGALn~~G-eLTk~GrrMaEfP~-dPmlsKmi~as~ky~--cs~EiitiaamlS~~~s------------ 717 (902)
T KOG0923|consen 654 LLKALEQLYALGALNHLG-ELTKLGRRMAEFPV-DPMLSKMIVASEKYK--CSEEIITIAAMLSVGAS------------ 717 (902)
T ss_pred HHHHHHHHHHhhcccccc-chhhhhhhhhhcCC-CHHHHhHHhhhcccc--chHHHHHHHHHHhcCch------------
Confidence 345566788899999885 89999999999774 665555555565544 33454 555554221
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHhCC-CCHHHHHHhcCCChhhHHHHHHHHHHH
Q 002426 811 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASG-LTWREMMMDCALDDGDLARLLRRTIDL 889 (924)
Q Consensus 811 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G-~~f~~i~~~t~l~eGdivR~~rRl~el 889 (924)
.-+.|.....-+ .-..-+..-+..-...++.+-..|..- .++.-++++ +=-.|.++|.-|+
T Consensus 718 vfyrpk~~~v~a-------------d~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~-----~iq~~sm~rardi 779 (902)
T KOG0923|consen 718 VFYRPKDKQVHA-------------DNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYEN-----FIQYRSMKRARDI 779 (902)
T ss_pred heecchhhhhhh-------------hhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHh-----hhhHHHHHHHHHH
Confidence 122222211111 111112222333344578888888654 555555554 4457999999999
Q ss_pred HhhcCCCC
Q 002426 890 LAQIPKLP 897 (924)
Q Consensus 890 L~Ql~~~~ 897 (924)
..||....
T Consensus 780 r~qL~gll 787 (902)
T KOG0923|consen 780 RDQLEGLL 787 (902)
T ss_pred HHHHHHHh
Confidence 99996653
No 236
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=20.68 E-value=2.9e+02 Score=24.43 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHcCcccCC---CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhh
Q 002426 732 KEFLRISNVIHETRALDIN---TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797 (924)
Q Consensus 732 ~~f~~~~~VL~~lgyld~~---~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v 797 (924)
..-.++++-|++-|||... +..+|.+|.....--...--++.+.+.. .-+++++++..++.+|-
T Consensus 14 stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~~~~~~~~~~~~~~~~l~~--~~~~~~~e~~~l~~~l~ 80 (96)
T smart00529 14 PTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLRKHRLLERFLVD--VLGVDEEEVHEEAERLE 80 (96)
T ss_pred HHHHHHHHHHHHCCCEEEcCCCceEechhHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHH
Confidence 4445777888889999653 3478999987643322111233333332 22789998888877654
No 237
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=20.61 E-value=36 Score=45.71 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 264 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 264 R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
+..|...|....+++|++|..+..|+|.|-..-|+. .+.+..-.+|+|..|||-+.+
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~--------~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVL--------FDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhhee--------ccCcchHHHHHHhhcccccch
Confidence 677888999999999999999999999998887777 556778899999999997665
No 238
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=20.49 E-value=1.1e+02 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCCccEEEEccccccCCCCchHHHHHHHHhCCC-CccEEEEc
Q 002426 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-EVQIICLS 61 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~-~~qiV~LS 61 (924)
+...++||+||+-++.. ..+..++..++. +.++|++-
T Consensus 91 ~~~~~vliVDEasmv~~----~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDS----RQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp -TSTSEEEESSGGG-BH----HHHHHHHHHS-T-T-EEEEEE
T ss_pred CCcccEEEEecccccCH----HHHHHHHHHHHhcCCEEEEEC
Confidence 67788999999999863 456667777765 67777753
No 239
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=20.40 E-value=86 Score=34.76 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=23.7
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEc
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LS 61 (924)
.+-++|||||+|.+........+..++...+.++++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 4578999999999854332222333344445566666543
No 240
>PRK10536 hypothetical protein; Provisional
Probab=20.12 E-value=1.1e+02 Score=33.37 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEE
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 60 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~L 60 (924)
.|++ ++||+||++.+.- .....++.+++.+.++|+.
T Consensus 174 tl~~-~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 174 TFEN-AVVILDEAQNVTA----AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred cccC-CEEEEechhcCCH----HHHHHHHhhcCCCCEEEEe
Confidence 3433 8999999999852 5666778888888888775
Done!