Query 002426
Match_columns 924
No_of_seqs 416 out of 2738
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 01:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 4E-104 1E-108 995.0 62.1 797 4-922 179-1006(1010)
2 3l9o_A ATP-dependent RNA helic 100.0 6E-104 2E-108 1001.5 45.8 800 4-922 277-1104(1108)
3 4a4z_A Antiviral helicase SKI2 100.0 3E-101 9E-106 969.4 56.3 816 4-922 134-993 (997)
4 4f92_B U5 small nuclear ribonu 100.0 7.1E-40 2.4E-44 428.8 24.6 297 18-392 1041-1354(1724)
5 4f92_B U5 small nuclear ribonu 100.0 5.8E-40 2E-44 429.6 18.2 299 19-393 203-520 (1724)
6 2zj8_A DNA helicase, putative 100.0 5E-34 1.7E-38 350.7 32.7 311 18-415 133-447 (720)
7 2va8_A SSO2462, SKI2-type heli 100.0 9.5E-34 3.3E-38 348.0 28.8 321 18-413 140-467 (715)
8 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-33 5E-38 345.6 29.8 308 18-413 133-446 (702)
9 2db3_A ATP-dependent RNA helic 99.9 1.4E-24 4.8E-29 251.1 25.8 221 18-358 198-426 (434)
10 3rc3_A ATP-dependent RNA helic 99.9 1.8E-24 6.1E-29 260.8 20.7 224 19-366 235-468 (677)
11 3i5x_A ATP-dependent RNA helic 99.9 5.1E-24 1.7E-28 254.3 21.5 221 20-351 223-457 (563)
12 3fht_A ATP-dependent RNA helic 99.9 7E-24 2.4E-28 241.8 20.4 206 19-343 164-380 (412)
13 3pey_A ATP-dependent RNA helic 99.9 1.9E-23 6.5E-28 236.4 22.2 209 18-343 140-357 (395)
14 3eiq_A Eukaryotic initiation f 99.9 5E-24 1.7E-28 243.4 16.4 206 19-343 179-388 (414)
15 2j0s_A ATP-dependent RNA helic 99.9 1.3E-23 4.4E-28 240.2 18.8 208 18-343 174-384 (410)
16 1s2m_A Putative ATP-dependent 99.9 5.3E-23 1.8E-27 234.2 23.4 206 18-343 158-366 (400)
17 1hv8_A Putative ATP-dependent 99.9 1.4E-22 4.9E-27 226.9 25.4 202 19-343 143-346 (367)
18 1oyw_A RECQ helicase, ATP-depe 99.9 9.5E-23 3.3E-27 241.0 24.4 210 22-354 138-354 (523)
19 2i4i_A ATP-dependent RNA helic 99.9 4.7E-23 1.6E-27 235.7 20.8 204 19-343 171-384 (417)
20 1xti_A Probable ATP-dependent 99.9 8.7E-23 3E-27 231.3 22.4 207 18-344 147-359 (391)
21 2v1x_A ATP-dependent DNA helic 99.9 7.3E-23 2.5E-27 244.8 21.6 204 21-342 163-374 (591)
22 3sqw_A ATP-dependent RNA helic 99.9 1.5E-22 5.3E-27 242.5 23.4 214 20-343 172-399 (579)
23 3fmp_B ATP-dependent RNA helic 99.9 1.4E-24 4.7E-29 254.1 4.2 205 20-343 232-447 (479)
24 3fho_A ATP-dependent RNA helic 99.9 2.5E-23 8.6E-28 245.3 14.3 224 19-359 255-490 (508)
25 2z0m_A 337AA long hypothetical 99.9 2.9E-22 1E-26 221.8 19.6 195 19-340 125-321 (337)
26 1fuu_A Yeast initiation factor 99.9 5E-23 1.7E-27 233.3 5.5 206 18-342 157-366 (394)
27 2xau_A PRE-mRNA-splicing facto 99.9 9.4E-22 3.2E-26 241.7 13.6 222 18-341 203-442 (773)
28 3oiy_A Reverse gyrase helicase 99.8 6.3E-21 2.2E-25 218.6 16.2 102 192-341 253-364 (414)
29 2jlq_A Serine protease subunit 99.8 4.6E-20 1.6E-24 214.2 14.2 110 191-340 188-309 (451)
30 1yks_A Genome polyprotein [con 99.8 2.8E-19 9.5E-24 206.9 17.4 109 191-339 177-296 (440)
31 1wp9_A ATP-dependent RNA helic 99.8 1.3E-18 4.6E-23 201.1 22.4 110 189-343 359-476 (494)
32 2whx_A Serine protease/ntpase/ 99.8 7.5E-20 2.6E-24 219.6 11.9 110 191-340 355-476 (618)
33 2z83_A Helicase/nucleoside tri 99.8 2E-19 6.9E-24 209.2 10.6 112 191-342 190-313 (459)
34 4a2p_A RIG-I, retinoic acid in 99.8 3.4E-19 1.1E-23 211.4 12.7 120 189-342 388-508 (556)
35 2v6i_A RNA helicase; membrane, 99.8 8.7E-19 3E-23 202.2 15.1 111 191-340 171-289 (431)
36 2rb4_A ATP-dependent RNA helic 99.8 1.7E-18 5.7E-23 174.8 15.0 112 188-343 31-148 (175)
37 1t5i_A C_terminal domain of A 99.8 1.5E-18 5E-23 175.0 14.3 114 186-343 26-139 (172)
38 2hjv_A ATP-dependent RNA helic 99.8 3.7E-18 1.3E-22 170.3 16.8 113 187-343 31-143 (163)
39 2eyq_A TRCF, transcription-rep 99.8 2.6E-18 8.7E-23 219.5 19.6 199 18-341 720-921 (1151)
40 2wv9_A Flavivirin protease NS2 99.8 1.6E-18 5.4E-23 209.5 15.2 109 190-339 409-530 (673)
41 1c4o_A DNA nucleotide excision 99.8 2.7E-18 9.4E-23 207.9 17.0 112 191-343 439-551 (664)
42 3eaq_A Heat resistant RNA depe 99.8 3.3E-18 1.1E-22 178.4 15.0 112 188-343 28-139 (212)
43 1fuk_A Eukaryotic initiation f 99.8 2.7E-18 9.2E-23 171.6 13.7 130 188-361 27-158 (165)
44 4ddu_A Reverse gyrase; topoiso 99.8 4.1E-18 1.4E-22 216.3 16.5 68 192-299 310-383 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 8.6E-19 2.9E-23 222.5 10.2 69 191-299 275-348 (1054)
46 2p6n_A ATP-dependent RNA helic 99.8 9.3E-18 3.2E-22 172.0 15.8 119 182-344 45-163 (191)
47 4gl2_A Interferon-induced heli 99.7 5.5E-18 1.9E-22 207.3 16.4 102 191-328 400-509 (699)
48 1gm5_A RECG; helicase, replica 99.7 1.6E-18 5.6E-23 212.0 10.1 82 250-341 614-696 (780)
49 3o8b_A HCV NS3 protease/helica 99.7 7.2E-18 2.5E-22 201.3 14.5 107 191-343 396-515 (666)
50 2d7d_A Uvrabc system protein B 99.7 1.4E-17 4.9E-22 201.5 16.9 112 191-343 445-557 (661)
51 3tbk_A RIG-I helicase domain; 99.7 3.3E-18 1.1E-22 202.5 10.4 120 189-342 387-507 (555)
52 2jgn_A DBX, DDX3, ATP-dependen 99.7 2E-17 7E-22 168.6 14.5 110 190-343 45-154 (185)
53 3i32_A Heat resistant RNA depe 99.7 2.2E-17 7.6E-22 180.8 13.6 111 189-343 26-136 (300)
54 2oca_A DAR protein, ATP-depend 99.7 1.6E-17 5.6E-22 195.5 12.1 107 180-329 337-444 (510)
55 4a2q_A RIG-I, retinoic acid in 99.7 3.1E-17 1.1E-21 203.6 15.0 120 189-342 629-749 (797)
56 2fwr_A DNA repair protein RAD2 99.7 3.3E-17 1.1E-21 191.1 13.5 109 186-341 344-453 (472)
57 2ykg_A Probable ATP-dependent 99.7 1.2E-17 4.2E-22 204.1 9.1 118 190-341 397-515 (696)
58 2yjt_D ATP-dependent RNA helic 99.5 4.6E-18 1.6E-22 170.9 0.0 109 190-342 29-137 (170)
59 4a2w_A RIG-I, retinoic acid in 99.7 1.7E-16 6E-21 199.5 13.5 119 189-341 629-748 (936)
60 1tf5_A Preprotein translocase 99.7 4E-16 1.4E-20 188.0 14.9 108 191-344 432-547 (844)
61 3h1t_A Type I site-specific re 99.6 1.7E-15 5.9E-20 181.7 15.7 106 190-330 438-546 (590)
62 3dmq_A RNA polymerase-associat 99.6 6.5E-14 2.2E-18 176.5 27.8 129 185-355 497-628 (968)
63 2fsf_A Preprotein translocase 99.6 1.3E-14 4.6E-19 174.4 18.5 108 190-343 440-584 (853)
64 1nkt_A Preprotein translocase 99.6 3.4E-14 1.2E-18 171.0 18.8 108 190-343 459-618 (922)
65 1z63_A Helicase of the SNF2/RA 99.5 5.8E-13 2E-17 156.2 19.7 111 190-341 340-452 (500)
66 3jux_A Protein translocase sub 99.5 4.4E-13 1.5E-17 158.2 16.9 107 191-343 474-588 (822)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 5.3E-11 1.8E-15 149.5 18.4 84 263-355 637-722 (1038)
68 1z5z_A Helicase of the SNF2/RA 99.2 3.4E-11 1.2E-15 129.9 12.3 119 180-341 102-223 (271)
69 3mwy_W Chromo domain-containin 99.2 3E-10 1E-14 140.8 18.8 110 190-341 571-683 (800)
70 1z3i_X Similar to RAD54-like; 99.0 5.2E-09 1.8E-13 126.6 16.7 117 183-341 408-527 (644)
71 1q0u_A Bstdead; DEAD protein, 97.9 4.7E-06 1.6E-10 86.1 4.5 68 18-87 145-213 (219)
72 3fe2_A Probable ATP-dependent 97.9 7.4E-06 2.5E-10 86.2 5.8 57 18-74 171-228 (242)
73 3iuy_A Probable ATP-dependent 97.9 1.1E-05 3.8E-10 83.8 6.6 56 18-73 162-218 (228)
74 1vec_A ATP-dependent RNA helic 97.9 1.7E-05 5.8E-10 80.8 7.0 49 18-66 141-189 (206)
75 2gxq_A Heat resistant RNA depe 97.8 1E-05 3.5E-10 82.4 4.8 57 19-75 140-197 (207)
76 2pl3_A Probable ATP-dependent 97.8 1.5E-05 5.1E-10 83.3 5.6 56 19-74 167-223 (236)
77 3ly5_A ATP-dependent RNA helic 97.8 1.5E-05 5.3E-10 85.0 5.1 55 19-73 197-252 (262)
78 2oxc_A Probable ATP-dependent 97.7 3E-05 1E-09 80.8 6.8 56 19-76 162-218 (230)
79 3ber_A Probable ATP-dependent 97.7 2.3E-05 7.7E-10 83.0 5.6 56 20-75 183-239 (249)
80 3bor_A Human initiation factor 97.7 2.8E-05 9.6E-10 81.4 6.0 56 19-74 169-225 (237)
81 3fmo_B ATP-dependent RNA helic 97.7 1.9E-05 6.3E-10 86.2 3.8 57 19-75 231-289 (300)
82 1qde_A EIF4A, translation init 97.7 3.7E-05 1.3E-09 79.4 5.7 56 18-73 150-206 (224)
83 1wrb_A DJVLGB; RNA helicase, D 97.6 3.1E-05 1.1E-09 81.8 4.6 56 19-74 170-230 (253)
84 1t6n_A Probable ATP-dependent 97.5 4.7E-05 1.6E-09 78.5 3.6 56 19-74 154-211 (220)
85 3dkp_A Probable ATP-dependent 97.4 8.6E-05 2.9E-09 77.9 4.6 56 19-76 171-230 (245)
86 3llm_A ATP-dependent RNA helic 97.4 8E-05 2.7E-09 77.9 3.6 54 21-76 174-229 (235)
87 4a15_A XPD helicase, ATP-depen 97.0 0.0029 9.8E-08 75.8 12.7 123 179-341 436-584 (620)
88 2vl7_A XPD; helicase, unknown 96.9 0.0011 3.8E-08 78.1 7.7 124 177-341 370-521 (540)
89 1rif_A DAR protein, DNA helica 96.6 0.0008 2.7E-08 72.2 2.7 45 19-67 221-265 (282)
90 3crv_A XPD/RAD3 related DNA he 96.2 0.025 8.5E-07 66.7 12.8 124 178-343 380-533 (551)
91 3b6e_A Interferon-induced heli 95.9 0.0039 1.3E-07 63.2 3.6 45 19-63 158-216 (216)
92 2fz4_A DNA repair protein RAD2 94.7 0.023 7.8E-07 59.3 4.9 42 22-68 191-232 (237)
93 2ipc_A Preprotein translocase 92.5 0.69 2.4E-05 56.5 12.7 31 309-341 667-697 (997)
94 2va8_A SSO2462, SKI2-type heli 89.1 0.41 1.4E-05 58.0 6.7 168 734-922 473-656 (715)
95 2p6r_A Afuhel308 helicase; pro 83.7 6.9 0.00024 47.1 13.4 139 730-891 451-602 (702)
96 2zj8_A DNA helicase, putative 75.4 8.1 0.00028 46.6 10.2 143 731-893 453-614 (720)
97 3i4u_A ATP-dependent RNA helic 66.7 15 0.00051 38.7 8.6 60 736-800 22-82 (270)
98 1z3i_X Similar to RAD54-like; 62.5 5.1 0.00017 47.8 4.5 40 22-64 191-230 (644)
99 1gm5_A RECG; helicase, replica 61.7 16 0.00054 44.6 8.6 50 250-299 446-496 (780)
100 4dyq_A Gene 1 protein; GP1, oc 54.9 7.4 0.00025 36.7 3.3 53 845-897 10-64 (140)
101 3oiy_A Reverse gyrase helicase 53.6 23 0.00078 39.1 7.7 65 190-285 63-127 (414)
102 3idw_A Actin cytoskeleton-regu 51.5 11 0.00037 31.2 3.2 26 867-892 42-67 (72)
103 4aik_A Transcriptional regulat 47.8 58 0.002 30.5 8.5 63 730-796 59-130 (151)
104 2eyq_A TRCF, transcription-rep 40.1 50 0.0017 42.0 8.5 49 251-299 682-731 (1151)
105 2elh_A CG11849-PA, LD40883P; s 38.9 59 0.002 27.4 6.2 51 848-898 23-74 (87)
106 1tc3_C Protein (TC3 transposas 38.3 28 0.00097 25.0 3.7 34 853-886 12-45 (51)
107 3fm5_A Transcriptional regulat 38.1 69 0.0024 29.5 7.2 63 731-797 68-139 (150)
108 1w36_D RECD, exodeoxyribonucle 37.9 24 0.00081 41.6 4.7 35 23-61 262-296 (608)
109 4ddu_A Reverse gyrase; topoiso 37.1 48 0.0016 42.0 7.6 65 189-284 119-183 (1104)
110 3deu_A Transcriptional regulat 36.6 69 0.0024 30.3 7.1 62 731-796 82-152 (166)
111 3oop_A LIN2960 protein; protei 36.6 70 0.0024 29.1 6.9 62 731-796 65-135 (143)
112 3e6m_A MARR family transcripti 34.9 61 0.0021 30.3 6.4 67 726-796 76-151 (161)
113 3jw4_A Transcriptional regulat 34.5 1E+02 0.0035 28.2 7.8 60 733-796 73-141 (148)
114 3hgt_A HDA1 complex subunit 3; 34.3 2.2E+02 0.0077 30.5 11.2 27 189-215 123-149 (328)
115 1deb_A APC protein, adenomatou 32.6 64 0.0022 24.5 4.5 39 707-745 10-51 (54)
116 4b8x_A SCO5413, possible MARR- 32.1 1.3E+02 0.0046 27.7 8.2 72 720-796 54-134 (147)
117 3eco_A MEPR; mutlidrug efflux 31.8 1.2E+02 0.004 27.3 7.6 72 721-796 51-131 (139)
118 3ech_A MEXR, multidrug resista 30.8 59 0.002 29.6 5.3 73 720-796 54-135 (142)
119 4hbl_A Transcriptional regulat 30.7 1.2E+02 0.004 27.9 7.5 60 730-796 68-136 (149)
120 1oyw_A RECQ helicase, ATP-depe 30.7 70 0.0024 36.8 7.0 59 192-284 66-124 (523)
121 2xau_A PRE-mRNA-splicing facto 29.5 98 0.0034 37.5 8.3 65 732-800 489-553 (773)
122 3sja_C Golgi to ER traffic pro 29.1 1.3E+02 0.0043 24.4 6.0 49 671-730 7-55 (65)
123 1t6n_A Probable ATP-dependent 28.9 1.3E+02 0.0043 29.5 7.9 76 192-299 83-164 (220)
124 2v1x_A ATP-dependent DNA helic 28.6 77 0.0026 37.1 7.0 59 192-284 85-145 (591)
125 3nqo_A MARR-family transcripti 28.6 1.5E+02 0.0052 28.5 8.2 72 721-796 61-141 (189)
126 3g3z_A NMB1585, transcriptiona 27.5 96 0.0033 28.2 6.2 58 827-888 14-71 (145)
127 2fa5_A Transcriptional regulat 27.4 1.4E+02 0.0047 27.6 7.4 62 731-796 77-147 (162)
128 2fbh_A Transcriptional regulat 27.4 1.3E+02 0.0043 27.2 7.0 62 731-796 66-136 (146)
129 3s2w_A Transcriptional regulat 26.9 1.5E+02 0.005 27.5 7.5 72 721-796 68-148 (159)
130 3nrv_A Putative transcriptiona 26.5 1.5E+02 0.0051 26.8 7.4 62 731-796 68-138 (148)
131 3sja_C Golgi to ER traffic pro 26.2 1.8E+02 0.006 23.6 6.4 48 424-480 7-54 (65)
132 1lj9_A Transcriptional regulat 25.5 1.2E+02 0.004 27.4 6.4 72 721-796 47-127 (144)
133 3te6_A Regulatory protein SIR3 24.8 53 0.0018 35.3 4.3 44 23-69 132-178 (318)
134 2qww_A Transcriptional regulat 24.7 1.4E+02 0.0049 27.2 6.9 64 731-796 69-143 (154)
135 1jko_C HIN recombinase, DNA-in 24.7 52 0.0018 23.9 3.1 35 852-886 11-45 (52)
136 2eth_A Transcriptional regulat 24.2 1.2E+02 0.0041 27.9 6.3 62 731-796 72-142 (154)
137 3shg_B VBHA; ampylation, adeny 24.2 47 0.0016 26.4 2.6 25 847-871 27-52 (61)
138 3k0l_A Repressor protein; heli 23.6 1.3E+02 0.0045 28.0 6.5 57 736-796 79-144 (162)
139 1gku_B Reverse gyrase, TOP-RG; 23.4 1.4E+02 0.0049 37.5 8.4 62 190-283 98-163 (1054)
140 3tgn_A ADC operon repressor AD 23.1 2.1E+02 0.0073 25.6 7.8 65 731-796 65-138 (146)
141 1fse_A GERE; helix-turn-helix 23.0 1.8E+02 0.006 22.9 6.3 46 847-892 11-56 (74)
142 2hr3_A Probable transcriptiona 22.8 1.6E+02 0.0055 26.5 6.8 69 818-888 5-76 (147)
143 3kp7_A Transcriptional regulat 22.6 1.5E+02 0.0052 27.0 6.6 61 732-796 66-137 (151)
144 3g3z_A NMB1585, transcriptiona 22.6 1E+02 0.0034 28.1 5.3 63 730-796 58-129 (145)
145 3cjn_A Transcriptional regulat 22.3 1.5E+02 0.0051 27.4 6.6 62 731-796 80-150 (162)
146 3fe2_A Probable ATP-dependent 21.5 3.6E+02 0.012 26.7 9.7 59 191-283 102-160 (242)
147 3ber_A Probable ATP-dependent 21.4 4.9E+02 0.017 25.9 10.9 75 191-299 111-192 (249)
148 3sjb_C Golgi to ER traffic pro 21.1 2.4E+02 0.0084 24.4 6.7 69 667-746 20-88 (93)
149 2orw_A Thymidine kinase; TMTK, 20.9 61 0.0021 31.5 3.5 14 23-36 76-89 (184)
150 2o8x_A Probable RNA polymerase 20.8 1.7E+02 0.0057 22.7 5.7 47 848-894 16-63 (70)
151 1s3j_A YUSO protein; structura 20.8 1.4E+02 0.0049 27.2 6.0 64 730-797 64-136 (155)
152 3boq_A Transcriptional regulat 20.6 1.2E+02 0.004 28.0 5.4 59 734-796 79-146 (160)
153 2gxg_A 146AA long hypothetical 20.6 2E+02 0.007 25.7 7.0 73 720-796 53-134 (146)
154 2r2a_A Uncharacterized protein 20.4 60 0.0021 32.2 3.4 40 24-63 88-132 (199)
155 3bdd_A Regulatory protein MARR 20.3 2.1E+02 0.0071 25.5 7.0 65 820-888 6-71 (142)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-104 Score=994.99 Aligned_cols=797 Identities=22% Similarity=0.332 Sum_probs=598.1
Q ss_pred eeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ceE
Q 002426 4 RIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTE 82 (924)
Q Consensus 4 ~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~~ 82 (924)
+.+|||++ ...++++++|||||+|+|.|.+||.+|++++.++|+++|+|+||||++|+.+|++|++...+ +++
T Consensus 179 L~~~L~~~------~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~ 252 (1010)
T 2xgj_A 179 LRSMLYRG------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 252 (1010)
T ss_dssp HHHHHHHT------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHcC------cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 34688874 66789999999999999999999999999999999999999999999999999999987644 799
Q ss_pred EecCCCCcccceEEecc--cccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCcccccccc
Q 002426 83 LITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ 160 (924)
Q Consensus 83 vv~s~~RpvpL~~~~~~--~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (924)
++.+++||+|+.++++. .+.++.+++..+.+....+....................+++.. +.
T Consensus 253 vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~--~~------------- 317 (1010)
T 2xgj_A 253 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG--QT------------- 317 (1010)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------------------------------
T ss_pred EEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc--cc-------------
Confidence 99999999999998764 24566666665554433221110000000000000000000000 00
Q ss_pred ccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCccc
Q 002426 161 HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240 (924)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~ 240 (924)
.+... ........+..++..+...+..|+||||+|++.|+.++..|...++.+..++..+...+++....+...+
T Consensus 318 ---~k~~~--~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 392 (1010)
T 2xgj_A 318 ---YKGGS--AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETD 392 (1010)
T ss_dssp ----------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred ---ccccc--ccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhh
Confidence 00000 0000022345566667666777999999999999999999998899999999999888887776665544
Q ss_pred ch-----hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHH
Q 002426 241 RE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315 (924)
Q Consensus 241 ~~-----~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ 315 (924)
+. .+.+++.+||++|||||++.+|+.++.+|++|.++|||||+++++|||||+++|||+++.|||+..++|+++.
T Consensus 393 ~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~ 472 (1010)
T 2xgj_A 393 RELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 472 (1010)
T ss_dssp TTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHH
T ss_pred hcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHH
Confidence 32 4556788999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhC
Q 002426 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395 (924)
Q Consensus 316 ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~ 395 (924)
+|+||+|||||+|.|..|+||+++++..+...+.+++.+.++|++|+|..+|+|++|+++ ..+
T Consensus 473 ~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~ilnll~-----------------~~~ 535 (1010)
T 2xgj_A 473 EYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR-----------------VEG 535 (1010)
T ss_dssp HHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHHHHH-----------------SSS
T ss_pred HHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHHHHHHH-----------------hcC
Confidence 999999999999999999999999887778888999999999999999999999999987 224
Q ss_pred CCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 002426 396 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475 (924)
Q Consensus 396 ~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~ 475 (924)
.+ .+.++++||++|+........+.++.+++.+++.+... .+.++.+|+.++.++.+.++...
T Consensus 536 ~~---~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~y~~~~~~~~~~~~~~~ 598 (1010)
T 2xgj_A 536 IS---PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVE--------------DEENVKEYHEIEQAIKGYREDVR 598 (1010)
T ss_dssp CC---HHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCC--------------SCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC--------------ChhhHHHHHHHHHHHHHHHHHHH
Confidence 54 47889999999998766555555555555554444321 14578999999999998766554
Q ss_pred HHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCC-cchh---hh-hhccccchhhhhhhhc
Q 002426 476 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDS-LDSS---KL-KNMASINDSFALNRLA 550 (924)
Q Consensus 476 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~ 550 (924)
..... ....+..+.+|++ +.++ .+.|. ...++|++..... .+++ .. ....+.+++++.|...
T Consensus 599 ~~~~~--------~~~~~~~l~~Gr~--v~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 665 (1010)
T 2xgj_A 599 QVVTH--------PANALSFLQPGRL--VEIS--VNGKD-NYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYI 665 (1010)
T ss_dssp HHHTS--------HHHHGGGCCTTEE--EEEE--ETTTE-EEEEEEEEEEEECCCSSCTTCCCCTTTTEEEEEEEEEEET
T ss_pred HHHhc--------cHHHHhhcCCCcE--EEEE--cCCCC-cceeEEEEecccccCCCccccccccCCceeEEEEeecccc
Confidence 33221 1224566678987 3332 22233 3344555431100 0011 00 0112334445544211
Q ss_pred ------cCCCCCCCCCCCCCccccccCCCCcee--eeccceeeeEee--cCCCCccccccCCCChHHHhhhhhhhhhHHH
Q 002426 551 ------QSNGDDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYR--IGFPNVALAQGDALPRETMSLLLDKGEMLWE 620 (924)
Q Consensus 551 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (924)
..+..+..+....|+ .++.++.|+ ++..+++..|+. +.+|. +..+.+.+..+ +.
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~ 729 (1010)
T 2xgj_A 666 DSPVNLLKPFNPTLPEGIRPA---EEGEKSICAVIPITLDSIKSIGNLRLYMPK------DIRASGQKETV-------GK 729 (1010)
T ss_dssp TSCGGGCCTTCCCCCTTCCBC---CTTCCEEEEEEEECGGGEEEEEEEECCCCS------STTCSSSHHHH-------HH
T ss_pred ccccccccccccccccccCCC---CCCcCCceEEEEechhhcceeeeeeEeccc------ccCChHHHHHH-------HH
Confidence 000000011112222 145667777 567788888885 33341 22222222111 11
Q ss_pred HhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCCchhhHHHH
Q 002426 621 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVD 700 (924)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~ 700 (924)
.+ .++.. +++.++|.++|+.+ |++. +..+..+.++++.|++++.+||||.|++. +
T Consensus 730 ~~--~~~~~-----------~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~ 784 (1010)
T 2xgj_A 730 SL--REVNR-----------RFPDGIPVLDPVKN------MKIE----DEDFLKLMKKIDVLNTKLSSNPLTNSMRL--E 784 (1010)
T ss_dssp HH--HHHHH-----------HSSSCCCBCCTTTT------SCCC----CHHHHHHHHHHHHHHHHHTTSHHHHSSSH--H
T ss_pred HH--HHHHH-----------hcccCCcccCchhh------hccc----cHHHHHHHHHHHHHHHHHHhCCcccCCCH--H
Confidence 11 11111 23557899999764 5554 34456778899999999999999999874 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhc
Q 002426 701 TVKFTEEKIKRLKARSKRLTKRIEQI-EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 779 (924)
Q Consensus 701 ~~~~~~~~~~~l~~~~~~l~~~i~~~-~~~~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g 779 (924)
+|+++++++.+|+++++.|++++++. +..+|++|+++++||++|||||+++ +||+|||+||+|+++||||+|||||+|
T Consensus 785 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~~kGr~a~~i~~~~el~~~e~~~~g 863 (1010)
T 2xgj_A 785 ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPND-IIELKGRVACEISSGDELLLTELIFNG 863 (1010)
T ss_dssp HHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTC-CBCHHHHHHHTCCSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCC-cccHHHHHHHHhcCccHHHHHHHHHcC
Confidence 89999999999999999999999994 5557999999999999999999874 899999999999999999999999999
Q ss_pred ccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----CCCchHHH
Q 002426 780 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFSG 854 (924)
Q Consensus 780 ~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~-----~~~~~l~~ 854 (924)
+|++|+|+||||+|||||||+ |.+ ..+.++++|.+++++++++|++|+++|.+|+++++. .|+|+||+
T Consensus 864 ~~~~l~p~~~aa~~s~~v~~~---~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 936 (1010)
T 2xgj_A 864 NFNELKPEQAAALLSCFAFQE---RCK----EAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELME 936 (1010)
T ss_dssp TTTTCCHHHHHHHHHHHHCCC---CCS----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTSCCTTHH
T ss_pred ccCCCCHHHHHHHHeeeEeec---CCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhcccCChHHHH
Confidence 999999999999999999998 542 234567999999999999999999999999999994 59999999
Q ss_pred HHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCccccC
Q 002426 855 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 922 (924)
Q Consensus 855 ~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~~ 922 (924)
+||+||+|+||++||++|+++|||||||||||+|||+||++|+++ |++|++||++|+++|+||||+.-
T Consensus 937 ~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~ 1006 (1010)
T 2xgj_A 937 VVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAG 1006 (1010)
T ss_dssp HHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCC
T ss_pred HHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecc
Confidence 999999999999999999999999999999999999999999987 99999999999999999999864
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-104 Score=1001.47 Aligned_cols=800 Identities=22% Similarity=0.321 Sum_probs=562.9
Q ss_pred eeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ceE
Q 002426 4 RIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTE 82 (924)
Q Consensus 4 ~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~~ 82 (924)
+.+|||++ ...++++++|||||+|+|.|.+||.+|++++..+++++|+|+||||+||..+|+.|++..++ ++.
T Consensus 277 L~~~L~~~------~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~ 350 (1108)
T 3l9o_A 277 LRSMLYRG------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 350 (1108)
T ss_dssp HHHHHHHC------SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEE
T ss_pred HHHHHHcC------ccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 45688884 55688999999999999999999999999999999999999999999999999999988765 799
Q ss_pred EecCCCCcccceEEecc--cccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCcccccccc
Q 002426 83 LITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ 160 (924)
Q Consensus 83 vv~s~~RpvpL~~~~~~--~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (924)
++.+++||+|+.++++. ...++.+++..+.+....+............ ..........+. ......+
T Consensus 351 vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~--~~~~~~~------ 419 (1108)
T 3l9o_A 351 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG---DDPNSTDSRGKK--GQTYKGG------ 419 (1108)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------------
T ss_pred EEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhc---cccccccccccc--ccccccc------
Confidence 99999999999988754 3456666666655443322111100000000 000000000000 0000000
Q ss_pred ccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCccc
Q 002426 161 HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 240 (924)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~ 240 (924)
.........+..++..+...+..|+||||+|++.|+.++..|...++.+..+...+...+.+.....++.+
T Consensus 420 ---------~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 490 (1108)
T 3l9o_A 420 ---------SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETD 490 (1108)
T ss_dssp --------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHT
T ss_pred ---------cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhh
Confidence 00000133456667777777888999999999999999999987666666666666665544333222211
Q ss_pred c-----hhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHH
Q 002426 241 R-----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 315 (924)
Q Consensus 241 ~-----~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ 315 (924)
. ..+...+.+||++|||||++.+|+.|+..|++|.++|||||+++++|||||++++||+...+|++..++|+++.
T Consensus 491 ~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~ 570 (1108)
T 3l9o_A 491 RELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 570 (1108)
T ss_dssp TCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHH
T ss_pred hhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHH
Confidence 1 13556788999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhC
Q 002426 316 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395 (924)
Q Consensus 316 ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~ 395 (924)
+|+||+|||||+|.|..|+||+++++..+...+.+++.+.++|+.|+|..+|+|+||+|+ ..+
T Consensus 571 eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnll~-----------------~~~ 633 (1108)
T 3l9o_A 571 EYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR-----------------VEG 633 (1108)
T ss_dssp HHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-----------------STT
T ss_pred HHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHHHH-----------------hcC
Confidence 999999999999999999999999998888889999999999999999999999999997 224
Q ss_pred CCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 002426 396 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 475 (924)
Q Consensus 396 ~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~ 475 (924)
.+ ++.++++||++||+....+..++++.+++.+++.+.. ..++++.+|+.++.++++.++.+.
T Consensus 634 ~~---~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~~~~~~~~~~~~~ 696 (1108)
T 3l9o_A 634 IS---PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEV--------------EDEENVKEYHEIEQAIKGYREDVR 696 (1108)
T ss_dssp CC---HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc--------------CchhhHHHHHHHHHHHHHHHHHHH
Confidence 44 4889999999999988766666666666555554432 126789999999999998876655
Q ss_pred HHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcch-----hhhhhccccchhhhhhhhc
Q 002426 476 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS-----SKLKNMASINDSFALNRLA 550 (924)
Q Consensus 476 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 550 (924)
...... ...+..+.+|++ +.+ ++..|. ...+++++......+. +....-.+.+++++.|...
T Consensus 697 ~~~~~~--------~~~~~~l~~G~~--v~~--~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 763 (1108)
T 3l9o_A 697 QVVTHP--------ANALSFLQPGRL--VEI--SVNGKD-NYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYI 763 (1108)
T ss_dssp HHHHSH--------HHHHHHCCTTEE--EEE--CCTTCC-EEEEEEEEEECCCC-----CCSSSSEEEEEECCCSTTCCS
T ss_pred HHHhCh--------HHHHhhCCCCCE--EEE--ecCCCc-ccceEEEEecccccccccccccCCCCCceeEEEEeccccc
Confidence 443221 223555678886 333 222133 3334555432111000 0001112344555544321
Q ss_pred cCCCCCCCCCCCCCcccc---ccCCCCcee--eeccceeeeEeec--CCCCccccccCCCChHHHhhhhhhhhhHHHHhh
Q 002426 551 QSNGDDYDTQDVKPSYYV---ALGSDNTWY--TFTEKWIKTVYRI--GFPNVALAQGDALPRETMSLLLDKGEMLWEKLA 623 (924)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (924)
..+..-.+.......+.+ ..+..+.|. +++.+.+..|+.. .+|. +..+.+.+..+ ...
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~-- 828 (1108)
T 3l9o_A 764 DSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPK------DIRASGQKETV-------GKS-- 828 (1108)
T ss_dssp CCCSSCTTTTCCSGGGSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCT------TTTSHHHHHHH-------HHH--
T ss_pred cccccccccccccCCccccCCCcccCCceEEEEechhheeeccceEEecCC------CcCCHHHHHHH-------HHH--
Confidence 100000000000000001 112334444 5566777777764 3331 22233322221 111
Q ss_pred hhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCCchhhHHHHhhh
Q 002426 624 DSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVK 703 (924)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~ 703 (924)
..++.. +++.++|.++|+.+ |++. ...+.++.++++.|++++.+||||.|++. +.|+
T Consensus 829 ~~~~~~-----------~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~ 885 (1108)
T 3l9o_A 829 LREVNR-----------RFPDGIPVLDPVKN------MKIE----DEDFLKLMKKIDVLNTKLSSNPLTNSMRL--EELY 885 (1108)
T ss_dssp HHHHHH-----------HCSSCCTTHHHHHH------HCCC----CHHHHHHHHHHHHHHHHHHHSSCTTCSSH--HHHH
T ss_pred HHHHHH-----------hcCCCCcccChhhh------cccC----CHHHHHHHHHHHHHHHHHHhCCCcCCCCH--HHHH
Confidence 111111 23567888888653 5554 34566778899999999999999999874 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccC
Q 002426 704 FTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 782 (924)
Q Consensus 704 ~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~ 782 (924)
++++++.+|.++++.|+++++..++. ++++|+++++||++|||||.++ +||+|||+||+|+++||||+|||||+|+|+
T Consensus 886 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~~kgr~a~~i~~~~el~~~e~~~~~~~~ 964 (1108)
T 3l9o_A 886 GKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPND-IIELKGRVACEISSGDELLLTELIFNGNFN 964 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTC-CCSHHHHHHHC-CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCC-cCcHHhHHHHHhcCccHHHHHHHHHhCccc
Confidence 99999999999999999999996555 7789999999999999999875 899999999999999999999999999999
Q ss_pred CCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCchHHHHHH
Q 002426 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC-----LDSQFSGMVE 857 (924)
Q Consensus 783 ~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~-----~~~~l~~~v~ 857 (924)
+|+|+||||+|||||||. |.++. +.+++.|.+++.+++++|++|+++|.+|+++++.+ |+|+||++||
T Consensus 965 ~l~~~~~aa~~s~~v~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 1037 (1108)
T 3l9o_A 965 ELKPEQAAALLSCFAFQE---RCKEA----PRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVY 1037 (1108)
T ss_dssp SSCCTHHHHHTCC-------------------------CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHCCSCHHHHH
T ss_pred CCCHHHHHHHHhheeeec---ccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHhccCCChHHHHHHH
Confidence 999999999999999998 55322 34689999999999999999999999999999753 9999999999
Q ss_pred HHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCccccC
Q 002426 858 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 922 (924)
Q Consensus 858 ~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~~ 922 (924)
+||+|+||++||++|+++|||||||||||+||||||++|+++ |++|++||++|+++|+||||+.-
T Consensus 1038 ~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~~ 1104 (1108)
T 3l9o_A 1038 EWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAG 1104 (1108)
T ss_dssp HHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEeec
Confidence 999999999999999999999999999999999999999986 99999999999999999999863
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-101 Score=969.42 Aligned_cols=816 Identities=21% Similarity=0.317 Sum_probs=562.6
Q ss_pred eeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccC-CceE
Q 002426 4 RIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKTE 82 (924)
Q Consensus 4 ~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~-~~~~ 82 (924)
+.+|++++ ...+.++++|||||+|++.|.+||.+|+++++++|+++|+|+||||++|+.+|++|++..+ ++++
T Consensus 134 L~~~l~~~------~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~ 207 (997)
T 4a4z_A 134 LRSMLYRG------ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIY 207 (997)
T ss_dssp HHHHHHHT------CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhC------chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceE
Confidence 35677764 5568899999999999999999999999999999999999999999999999999999765 5799
Q ss_pred EecCCCCcccceEEecccccccccccccccccchhhhh--hhhhhccccCCC-----CcC----C-C-----Cccccccc
Q 002426 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL--NYLQLSTSEVKP-----YKD----G-G-----SRRRNSRK 145 (924)
Q Consensus 83 vv~s~~RpvpL~~~~~~~~~l~~l~d~~~~~~~~~l~~--~~~~~~~~~~~~-----~~~----~-~-----~~~~~~~~ 145 (924)
++.+.+||+|+.+++.....++++++..+.+....+.. ..+......... .+. . . .++.....
T Consensus 208 vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~ 287 (997)
T 4a4z_A 208 VISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGR 287 (997)
T ss_dssp EEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------------------------
T ss_pred EEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999888777888887766554432211 111100000000 000 0 0 00000000
Q ss_pred ccCCCCCcccccc-ccccCchh--hhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhH
Q 002426 146 HADMNSNNIVTSF-GQHQLSKN--SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 222 (924)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~ 222 (924)
++...+..++... .......+ .+..........+..++..+...+..|+||||+|++.|+.++..|...++.+..++
T Consensus 288 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 367 (997)
T 4a4z_A 288 GNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEK 367 (997)
T ss_dssp -----------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHH
Confidence 0000000000000 00000000 00000001123355666777777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcccch-----hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEE
Q 002426 223 SEVELALKRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 297 (924)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~-----~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VV 297 (924)
..+...+++.....++.+.+ .+...+.+||++|||||++.+|+.|+++|++|.++|||||+++++|||||+++||
T Consensus 368 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VV 447 (997)
T 4a4z_A 368 SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVI 447 (997)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEE
Confidence 99999998887777655433 4567789999999999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC-CCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhh
Q 002426 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT-PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376 (924)
Q Consensus 298 I~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~-~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~ 376 (924)
|.++.||||.++.|+++.+|+||+|||||+|.|..|+||+++. +..+...+.+++.+.++++.|+|..+|||++|+|..
T Consensus 448 i~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~ 527 (997)
T 4a4z_A 448 FSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRI 527 (997)
T ss_dssp ESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhh
Confidence 9999999999999999999999999999999999999999883 455677788899999999999999999999999861
Q ss_pred hhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHH
Q 002426 377 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAA 456 (924)
Q Consensus 377 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 456 (924)
.. ..++.+++.||.+|+........+..+..+++++..+... .| ....++
T Consensus 528 -----------------~~---~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-------~c---~~c~~~ 577 (997)
T 4a4z_A 528 -----------------EA---LRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYK-------SC---EICDND 577 (997)
T ss_dssp -----------------CT---THHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred -----------------cc---ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh-------cc---cccccc
Confidence 12 2468899999999987765444444444444443333211 11 111368
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcchhhhhh
Q 002426 457 YKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKN 536 (924)
Q Consensus 457 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (924)
+.+|++++.++.+.++.... .. .+. ...+..+.+|++ +.+ ++..+. .. ++|++....+.+..
T Consensus 578 ~~~~~~~r~~~~~~~~~~~~---~~--~~~---~~~~~~l~~gr~--v~~--~~~~~~-~~-~~~v~~~~~~~~~~---- 639 (997)
T 4a4z_A 578 IEKFLELMLAYKEATVNLMQ---EM--VKS---PSILHILKEGRL--VAF--RDPNDC-LK-LGFVFKVSLKDAVC---- 639 (997)
T ss_dssp --CHHHHHHHHHHHHHHHHH---HH--TTS---TTHHHHTCTTEE--EEE--ECTTCC-EE-EEEEEEEETTTTEE----
T ss_pred HHHHHHHHHHHHHHHHHHHH---HH--hcC---HhHHhhCCCCCE--EEE--ecCCCC-ee-EEEEEeeccCCCCC----
Confidence 99999999999987654321 11 001 113455568886 223 222211 12 45555422111000
Q ss_pred ccccchhhhh--hhhccCCCCCCCCCCC-CCcccc---ccCCCC--ceeeeccceeeeEeecCCCCccccccCCCChHHH
Q 002426 537 MASINDSFAL--NRLAQSNGDDYDTQDV-KPSYYV---ALGSDN--TWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 608 (924)
Q Consensus 537 ~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 608 (924)
.+.++.. +.....+.+ .+..+ .+.++. .....+ ...+++.+.+..|+...+|.+. .+..
T Consensus 640 ---~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 706 (997)
T 4a4z_A 640 ---VIMTFTKPYKLPNGEPNH--LIYFPKADGYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPL--------GKVI 706 (997)
T ss_dssp ---EEEC-CCCCC------------CCTTCHHHHHHHCCCCCCCCCCEEEEECC-CCEEEEEECC-CH--------HHHH
T ss_pred ---ceEEEeccccccccCccc--cCCCcccccccccccCcccCCceEEEEeccchhhhhhcccccCCh--------Hhhh
Confidence 1111111 000000000 00000 000000 001112 2336677788888876555210 1111
Q ss_pred hhhhhhhhhHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHh
Q 002426 609 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIAR 688 (924)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 688 (924)
.. .....++++ +.+.... . . |.++|+.+ |++. ...+.+...+++.|+.++.+
T Consensus 707 ~~----~~~~~~~~~-~~~~~~~-----------~-~-~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~ 758 (997)
T 4a4z_A 707 KK----DVAALNEFN-AETNNIL-----------D-G-KTLKEAIN------IEKQ----GLKIHQILLDRTNIRDEIFK 758 (997)
T ss_dssp HT----CHHHHHHHH-HHHHHHH-----------H-S-CCCCCC----------------CCHHHHHHHHHHHHHHC---
T ss_pred cC----CHHHHHHHH-HHHHHHh-----------c-c-CCCCchhh------cccc----cHHHHHHHHHHHHHHHHHHh
Confidence 11 111122221 1111111 1 1 66677653 4433 12334556789999999999
Q ss_pred ccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCc
Q 002426 689 TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 768 (924)
Q Consensus 689 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ 768 (924)
||||.|++. ++|+++++++.+|.++++.|+++++..+.+++++|+++++||++|||||.++ +||+|||+||||+++|
T Consensus 759 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~~kgr~a~~i~~~~ 835 (997)
T 4a4z_A 759 LKSIKCPNL--SQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNH-NVLLKGRVACEINSGY 835 (997)
T ss_dssp -----------CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSBCTTC-CBCHHHHHHTTCCSSC
T ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcCCCC-cccHHhHHHhhhcCcc
Confidence 999999874 8899999999999999999999999999999999999999999999999875 9999999999999999
Q ss_pred hHHHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--
Q 002426 769 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-- 846 (924)
Q Consensus 769 ELlltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~-- 846 (924)
||++|||||+|+|++|+|+||||+|||||||+ |.+++. .+.+++.|++++.+++++|++|++++.+|+++++.
T Consensus 836 el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 910 (997)
T 4a4z_A 836 ELVLTELILDNFLGSFEPEEIVALLSVFVYEG---KTREEE--PPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDE 910 (997)
T ss_dssp HHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCC---CCSSCC--CCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCcccCCCHHHHHHHHhhhhccc---cCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccch
Confidence 99999999999999999999999999999998 553222 34678999999999999999999999999999863
Q ss_pred -----CCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCcc
Q 002426 847 -----CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPI 919 (924)
Q Consensus 847 -----~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v 919 (924)
.|+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++ |++|++||++|+++|+||||
T Consensus 911 ~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv 990 (997)
T 4a4z_A 911 AEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIV 990 (997)
T ss_dssp HHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGG
T ss_pred hhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCee
Confidence 49999999999999999999999999999999999999999999999999864 99999999999999999999
Q ss_pred ccC
Q 002426 920 SEL 922 (924)
Q Consensus 920 ~~~ 922 (924)
+.-
T Consensus 991 ~~~ 993 (997)
T 4a4z_A 991 FAA 993 (997)
T ss_dssp GCC
T ss_pred ecc
Confidence 863
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.1e-40 Score=428.76 Aligned_cols=297 Identities=22% Similarity=0.318 Sum_probs=224.1
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHh-------CCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-------CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 90 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~-------lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~Rp 90 (924)
...+++|++||+||+|+|+| .||++||.++.+ +++++|+|+||||++|++++++||+..+..++++.+++||
T Consensus 1041 ~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RP 1119 (1724)
T 4f92_B 1041 RKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRP 1119 (1724)
T ss_dssp CHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCS
T ss_pred ccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCC
Confidence 45688999999999999998 699999998764 4678999999999999999999999887789999999999
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
|||+.++...+... ....+ .
T Consensus 1120 vpL~~~i~~~~~~~---------~~~~~----~----------------------------------------------- 1139 (1724)
T 4f92_B 1120 VPLELHIQGFNISH---------TQTRL----L----------------------------------------------- 1139 (1724)
T ss_dssp SCEEEEEEEECCCS---------HHHHH----H-----------------------------------------------
T ss_pred CCeEEEEEeccCCC---------chhhh----h-----------------------------------------------
Confidence 99998875322100 00000 0
Q ss_pred hhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC--------CCCCHHhHHHHHHHHHHHHhhCCcccch
Q 002426 171 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--------NLLDECEMSEVELALKRFRILYPDAVRE 242 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~--------~l~~~~e~~~i~~~l~~~~~~~~~~~~~ 242 (924)
.....+...+.. ....+|+||||+||+.|+..|..|... .+.... .+.+...+ ... ...
T Consensus 1140 ---~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~-~~~l~~~l----~~~---~d~ 1206 (1724)
T 4f92_B 1140 ---SMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT-EKDLIPYL----EKL---SDS 1206 (1724)
T ss_dssp ---TTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSC-HHHHHHHH----TTC---CCH
T ss_pred ---hhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhccc-HHHHHHHH----hhc---ccH
Confidence 000112222222 234579999999999999988877521 111111 11111111 111 123
Q ss_pred hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC--cccCCHHHHHHH
Q 002426 243 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQM 320 (924)
Q Consensus 243 ~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~--~~pls~~ey~Qm 320 (924)
.+.+++.+|||+|||||++.+|..||++|++|.++|||||+|+|+|||+|+++|||.++.+|||.. ..|+++.+|+||
T Consensus 1207 ~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1207 TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1286 (1724)
T ss_dssp HHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHH
T ss_pred HHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHh
Confidence 566789999999999999999999999999999999999999999999999999999999999864 468999999999
Q ss_pred hcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHH
Q 002426 321 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 392 (924)
Q Consensus 321 ~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~ 392 (924)
+|||||+|.|..|.|++++.+.+ ..+++.+.+.+.|++|++...+...+|..- ...++.+.+++++|+
T Consensus 1287 ~GRAGR~g~d~~G~avll~~~~~--~~~~~~ll~~~~pveS~L~~~l~~~l~~eI--~~~~i~~~~d~~~~l 1354 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQGSK--KDFFKKFLYEPLPVESHLDHCMHDHFNAEI--VTKTIENKQDAVDYL 1354 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEEGGG--HHHHHHHTTSCBCCCCCGGGSCHHHHHHHH--HTTSCCBHHHHHHHH
T ss_pred hccccCCCCCCceEEEEEecchH--HHHHHHHhCCCCceeeecccchHHHHHHHH--HhcccCCHHHHHHHH
Confidence 99999999999999999997643 456777778889999999887766555322 122444555555554
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.8e-40 Score=429.60 Aligned_cols=299 Identities=25% Similarity=0.340 Sum_probs=219.3
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHh-------CCCCccEEEEcccCCCHHHHHHHhcccCC-ceEEecCCCCc
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-------CPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRP 90 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~-------lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~~vv~s~~Rp 90 (924)
.++++|++||+||+|+++| +||++||.++.+ +++++|+|+||||+||++++|+||+..+. .+.++.+++||
T Consensus 203 ~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RP 281 (1724)
T 4f92_B 203 TYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRP 281 (1724)
T ss_dssp HHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCS
T ss_pred hhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCcc
Confidence 4688999999999999998 799999998764 47889999999999999999999986533 57889999999
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
|||++++....... . ....
T Consensus 282 vpL~~~~~~~~~~~------~---~~~~---------------------------------------------------- 300 (1724)
T 4f92_B 282 VPLEQTYVGITEKK------A---IKRF---------------------------------------------------- 300 (1724)
T ss_dssp SCEEEECCEECCCC------H---HHHH----------------------------------------------------
T ss_pred CccEEEEeccCCcc------h---hhhh----------------------------------------------------
Confidence 99998765322000 0 0000
Q ss_pred hhccCchhHHHHHH-HHH-hCCCCCeEEEEcChHhHHHHHHHhhhC----C---CCCHHhHHHHHHHHHHHHhhCCcccc
Q 002426 171 IRRSQVPQVIDTLW-HLR-SRDMLPAIWFIFNRRGCDAAVQYLEDC----N---LLDECEMSEVELALKRFRILYPDAVR 241 (924)
Q Consensus 171 ~~~~~~~~~~~~l~-~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~----~---l~~~~e~~~i~~~l~~~~~~~~~~~~ 241 (924)
..+...+. .+. .....|+||||+||+.|+..|+.|... + ...... ....+.+ .........
T Consensus 301 ------~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 370 (1724)
T 4f92_B 301 ------QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREG-SASTEVL---RTEAEQCKN 370 (1724)
T ss_dssp ------HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCC-TTCSSHH---HHTTSCCST
T ss_pred ------HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccc-hhHHHHH---Hhhhccccc
Confidence 00000111 111 123469999999999999999887521 0 000000 0000000 011111112
Q ss_pred hhHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCC--cccCCHHHHHH
Q 002426 242 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQ 319 (924)
Q Consensus 242 ~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~--~~pls~~ey~Q 319 (924)
..+.+++.+|||+|||||++.+|..||++|++|.++|||||+|||+||||||++|||.++++|++.. ..|+++.+|+|
T Consensus 371 ~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Q 450 (1724)
T 4f92_B 371 LELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQ 450 (1724)
T ss_dssp HHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHH
Confidence 2566789999999999999999999999999999999999999999999999999999999999763 57899999999
Q ss_pred HhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHH
Q 002426 320 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393 (924)
Q Consensus 320 m~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~ 393 (924)
|+|||||+|+|..|.+|+++++.+. ..+..+ ...+.|++|+|......+||. .....++.+..++++|+.
T Consensus 451 m~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~l-l~~~~pieS~l~~~l~d~L~a--eI~~g~i~~~~~a~~~l~ 520 (1724)
T 4f92_B 451 MLGRAGRPQYDTKGEGILITSHGEL-QYYLSL-LNQQLPIESQMVSKLPDMLNA--EIVLGNVQNAKDAVNWLG 520 (1724)
T ss_dssp HHTTBSCTTTCSCEEEEEEEESTTC-CHHHHH-TTTCSCCCCCTTTTHHHHHHH--HHHHTSCCBHHHHHHHHH
T ss_pred hhhhccCCCCCCccEEEEEecchhH-HHHHHH-HcCCCcchhhccccHHHHHHH--HHHHhhcCCHHHHHHHHh
Confidence 9999999999999999999887553 344444 455689999998876655553 222346667777776653
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5e-34 Score=350.69 Aligned_cols=311 Identities=30% Similarity=0.379 Sum_probs=232.3
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
..+++++++||+||+|++++.+||..|+.++.+++.+.|+|+||||++|++++++|++ +..+..++||+|+..++
T Consensus 133 ~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~rp~~l~~~~ 207 (720)
T 2zj8_A 133 SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-----AELIVSDWRPVKLRRGV 207 (720)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTT-----EEEEECCCCSSEEEEEE
T ss_pred hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhC-----CcccCCCCCCCcceEEE
Confidence 4568999999999999999999999999999988778999999999999999999997 56788999999998765
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
........ .+. ... ...
T Consensus 208 ~~~~~~~~-~~~----------------------------~~~----------------------------------~~~ 224 (720)
T 2zj8_A 208 FYQGFVTW-EDG----------------------------SID----------------------------------RFS 224 (720)
T ss_dssp EETTEEEE-TTS----------------------------CEE----------------------------------ECS
T ss_pred EeCCeeec-ccc----------------------------chh----------------------------------hhh
Confidence 32211000 000 000 000
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC--CCCCHHhHHHHHHHHHHHHhhCCcc-cchhHHhhhccceEE
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDA-VREPAIKGLLKGVAA 254 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~--~l~~~~e~~~i~~~l~~~~~~~~~~-~~~~~~~~L~~GVa~ 254 (924)
.....+..+.. ...++||||+|++.|+.++..|... .+.+..+...+....+.+ ... ....+.+.+..||++
T Consensus 225 ~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 225 SWEELVYDAIR-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSL----EENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp STTHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTS----CSCHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH----hcccchHHHHHHHhcCeee
Confidence 11122233222 3469999999999999999988732 344444444443333322 111 112355678899999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
|||||++.+|..|++.|++|.++|||||+++++|||+|+++|||+++.+||+.+..|.+..+|+||+|||||.|.|..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999966667999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHH-HHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHhhh
Q 002426 335 VVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413 (924)
Q Consensus 335 vill~~~~~~~~~~~-~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~~~ 413 (924)
||+++++.. ...++ +++.+.++|++|++....+...++++.... ....+.+++..++..+|...+
T Consensus 380 ~~~l~~~~~-~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~-------------~~~~~~~d~~~~l~~~~~~~~ 445 (720)
T 2zj8_A 380 GIIVSTSDD-PREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIAT-------------FGYSTVEEILKFISNTFYAYQ 445 (720)
T ss_dssp EEEECSSSC-HHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHH-------------SCCCSHHHHHHHHHTSHHHHH
T ss_pred EEEEecCcc-HHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHh-------------CCCCCHHHHHHHHHhChHHHh
Confidence 999998765 44434 577789999999997654444444331111 112456678888888988776
Q ss_pred cc
Q 002426 414 GS 415 (924)
Q Consensus 414 ~~ 415 (924)
..
T Consensus 446 ~~ 447 (720)
T 2zj8_A 446 RK 447 (720)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.5e-34 Score=348.02 Aligned_cols=321 Identities=28% Similarity=0.361 Sum_probs=222.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
..+++++++||+||+|.+.|..||..++.++.+++ +.|+|+||||++|++++++|++ +.++..++||+|+..++
T Consensus 140 ~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 140 PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLG-----AEPVATNWRPVPLIEGV 213 (715)
T ss_dssp CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHT-----CEEEECCCCSSCEEEEE
T ss_pred hhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhC-----CCccCCCCCCCCceEEE
Confidence 44589999999999999999999999999998887 7999999999999999999997 56788999999998765
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
....... ....+ .+. .. ... .+ ....
T Consensus 214 ~~~~~~~---------~~~~~--~~~-----------~~-~~~---------------------~~----------~~~~ 239 (715)
T 2va8_A 214 IYPERKK---------KEYNV--IFK-----------DN-TTK---------------------KV----------HGDD 239 (715)
T ss_dssp EEECSST---------TEEEE--EET-----------TS-CEE---------------------EE----------ESSS
T ss_pred EecCCcc---------cceee--ecC-----------cc-hhh---------------------hc----------ccch
Confidence 4211000 00000 000 00 000 00 0001
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCC---CCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN---LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~---l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.+...+..+.. ...++||||+|++.|+.++..|.... +.+.++...+....+.+ ...+......+.+.+..||++
T Consensus 240 ~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDI-EEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTC-CSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHh-hhccccccHHHHHHHhcCEEE
Confidence 22333444333 34699999999999999999997531 45555555555444433 111111223455677889999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecC---CCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT---ASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~d---g~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
|||||++.+|..|++.|++|.++|||||+++++|||+|++++||+++.+|| +.+..|.+..+|+||+|||||.|.|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~ 397 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQ 397 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCS
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999999998898 55568999999999999999999999
Q ss_pred ccEEEEEeCCCCCHHHHH-HHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHH
Q 002426 332 RGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 410 (924)
Q Consensus 332 ~G~vill~~~~~~~~~~~-~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~ 410 (924)
.|.||+++++......+. +++.+.++|++|.+.....+...+++.... ....+.+++..++..+|.
T Consensus 398 ~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~-------------g~~~~~~~~~~~l~~~~~ 464 (715)
T 2va8_A 398 IGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSA-------------EGNLSEKQLENFAYESLL 464 (715)
T ss_dssp CEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHH-------------HCSEEHHHHHHHHTTSSS
T ss_pred CceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhc-------------cccCCHHHHHHHHHhhHH
Confidence 999999998765444444 466788999999997744433333331101 111245667777777775
Q ss_pred hhh
Q 002426 411 NYV 413 (924)
Q Consensus 411 ~~~ 413 (924)
..+
T Consensus 465 ~~~ 467 (715)
T 2va8_A 465 AKQ 467 (715)
T ss_dssp CHH
T ss_pred Hhh
Confidence 443
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.5e-33 Score=345.60 Aligned_cols=308 Identities=28% Similarity=0.375 Sum_probs=224.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC---CCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l---p~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
..+++++++||+||+|.+.+.+||..++.++..+ +++.|+|+||||++|++++++|++ +.++..++||+|+.
T Consensus 133 ~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~r~~~l~ 207 (702)
T 2p6r_A 133 ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD-----ADYYVSDWRPVPLV 207 (702)
T ss_dssp CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTT-----CEEEECCCCSSCEE
T ss_pred hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhC-----CCcccCCCCCccce
Confidence 4558999999999999999999999999998766 578999999999999999999997 56788999999998
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
.++....... ..+... +. .+
T Consensus 208 ~~~~~~~~~~-~~~~~~---------------------------~~-----------------------~~--------- 227 (702)
T 2p6r_A 208 EGVLCEGTLE-LFDGAF---------------------------ST-----------------------SR--------- 227 (702)
T ss_dssp EEEECSSEEE-EEETTE---------------------------EE-----------------------EE---------
T ss_pred EEEeeCCeee-ccCcch---------------------------hh-----------------------hh---------
Confidence 7654322100 000000 00 00
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC--CCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~--~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
.. .....+..+.. ...++||||+|++.|+.++..|... .+.+..+ ..+.+....+......+.+.+..||
T Consensus 228 ~~-~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 228 RV-KFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG------LEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EC-CHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS------HHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hh-hHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH------HHHHHHhhccccccHHHHHHHhcCe
Confidence 00 02223333333 3469999999999999999988632 2222222 1111212222222234556678899
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
++|||||++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+||| ...|.+..+|+||+|||||.|.|..
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~-~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESS-SEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCC-CCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999994 3789999999999999999999999
Q ss_pred cEEEEEeCCCCCHHHHH-HHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHHHhCCCHHHHHHHHHhhHHh
Q 002426 333 GHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411 (924)
Q Consensus 333 G~vill~~~~~~~~~~~-~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf~~ 411 (924)
|.|++++++.+ ...+. +++.+.++|++|.+.....+..++++.... ....+.+++..++..+|..
T Consensus 379 G~~~~l~~~~~-~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~-------------g~~~~~~~~~~~l~~t~~~ 444 (702)
T 2p6r_A 379 GEAIIIVGKRD-REIAVKRYIFGEPERITSKLGVETHLRFHSLSIICD-------------GYAKTLEELEDFFADTFFF 444 (702)
T ss_dssp EEEEEECCGGG-HHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHH-------------TSCSSHHHHHHHHHTSTTH
T ss_pred ceEEEEecCcc-HHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHc-------------CCCCCHHHHHHHHHhhhHH
Confidence 99999998755 44444 366788999999997744433333331101 1123567788888888876
Q ss_pred hh
Q 002426 412 YV 413 (924)
Q Consensus 412 ~~ 413 (924)
.+
T Consensus 445 ~~ 446 (702)
T 2p6r_A 445 KQ 446 (702)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.93 E-value=1.4e-24 Score=251.05 Aligned_cols=221 Identities=19% Similarity=0.219 Sum_probs=159.5
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhC--CCCccEEEEcccCCCHHHHHHHhccc-CCceEEecCCC--Cccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC--PKEVQIICLSATVANADELAGWIGQI-HGKTELITSSR--RPVP 92 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l--p~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s~~--Rpvp 92 (924)
...++++++||+||+|.|.|.+++..+..++..+ ++..|+++||||+++ ++..+.... +.+..+..... ....
T Consensus 198 ~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~--~~~~~~~~~l~~~~~i~~~~~~~~~~~ 275 (434)
T 2db3_A 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIVGGACSD 275 (434)
T ss_dssp SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCH--HHHHHHHTTCSSCEEEEESSTTCCCTT
T ss_pred CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCH--HHHHHHHHhccCCEEEEeccccccccc
Confidence 3458899999999999999999999999998875 678999999999984 333333321 11221111100 0011
Q ss_pred ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhh
Q 002426 93 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR 172 (924)
Q Consensus 93 L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (924)
+.+.+....
T Consensus 276 i~~~~~~~~----------------------------------------------------------------------- 284 (434)
T 2db3_A 276 VKQTIYEVN----------------------------------------------------------------------- 284 (434)
T ss_dssp EEEEEEECC-----------------------------------------------------------------------
T ss_pred cceEEEEeC-----------------------------------------------------------------------
Confidence 111110000
Q ss_pred ccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 173 RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 173 ~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
.......++..+.... .++||||+|++.|+.+++.|...++ .+
T Consensus 285 --~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~----------------------------------~~ 327 (434)
T 2db3_A 285 --KYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEF----------------------------------PT 327 (434)
T ss_dssp --GGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTC----------------------------------CE
T ss_pred --cHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCC----------------------------------CE
Confidence 0001111223333333 3599999999999999999875443 67
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
..+||++++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..
T Consensus 328 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d~p~~~~~y~qriGR~gR~g--~~ 397 (434)
T 2db3_A 328 TSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YDMPSKIDDYVHRIGRTGRVG--NN 397 (434)
T ss_dssp EEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SSCCSSHHHHHHHHTTSSCTT--CC
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------ECCCCCHHHHHHHhcccccCC--CC
Confidence 89999999999999999999999999999999999999999999999 778999999999999999999 78
Q ss_pred cEEEEEeCCCCCH---HHHHHHHhCCCcc
Q 002426 333 GHVVLVQTPYEGA---EECCKLLFAGVEP 358 (924)
Q Consensus 333 G~vill~~~~~~~---~~~~~l~~~~~~p 358 (924)
|.++++.++.++. ..+.+++.....+
T Consensus 398 G~a~~~~~~~~~~~~~~~l~~~l~~~~~~ 426 (434)
T 2db3_A 398 GRATSFFDPEKDRAIAADLVKILEGSGQT 426 (434)
T ss_dssp EEEEEEECTTTCGGGHHHHHHHHHHTTCC
T ss_pred CEEEEEEeccccHHHHHHHHHHHHHcCCC
Confidence 9999998865442 3344454444333
No 10
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=1.8e-24 Score=260.79 Aligned_cols=224 Identities=21% Similarity=0.249 Sum_probs=170.8
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCC-CCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceEEe
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 97 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp-~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~~ 97 (924)
...+.+++|||||+|+|+|.+||..|+.++..++ ..+|++++|||+++...++.+.+. .+. +....|++|+....
T Consensus 235 ~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~---~~~-v~~~~r~~~l~~~~ 310 (677)
T 3rc3_A 235 SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGE---EVE-VRDYKRLTPISVLD 310 (677)
T ss_dssp CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTC---CEE-EEECCCSSCEEECS
T ss_pred hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCC---ceE-EEEeeecchHHHHH
Confidence 3467889999999999999999999999999998 789999999998777777766542 222 23334555544210
Q ss_pred cccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCch
Q 002426 98 STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 177 (924)
Q Consensus 98 ~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (924)
.. + ..
T Consensus 311 ~~--------------l-~~------------------------------------------------------------ 315 (677)
T 3rc3_A 311 HA--------------L-ES------------------------------------------------------------ 315 (677)
T ss_dssp SC--------------C-CS------------------------------------------------------------
T ss_pred HH--------------H-HH------------------------------------------------------------
Confidence 00 0 00
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
+. .-....||||+|++.|+.+++.|...+ .+|++|||
T Consensus 316 -----l~----~~~~g~iIf~~s~~~ie~la~~L~~~g----------------------------------~~v~~lHG 352 (677)
T 3rc3_A 316 -----LD----NLRPGDCIVCFSKNDIYSVSRQIEIRG----------------------------------LESAVIYG 352 (677)
T ss_dssp -----GG----GCCTTEEEECSSHHHHHHHHHHHHHTT----------------------------------CCCEEECT
T ss_pred -----HH----hcCCCCEEEEcCHHHHHHHHHHHHhcC----------------------------------CCeeeeec
Confidence 00 001246999999999999999987533 38999999
Q ss_pred CCCHHHHHHHHHHhhC--CCeeEEEEccccccccCCCCceEEEecceecCC-----CCcccCCHHHHHHHhcccCCCCCC
Q 002426 258 GCLPIWKSFIEELFQR--GLVKVVFATETLAAGINMPARTAVLSSLSKRTA-----SGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~--G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg-----~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
+|++.+|+.++..|++ |.++|||||+++++|||+|...||+.++.||+. ....|++..+|+||+|||||.|.+
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 9999999999999999 999999999999999999888888888888631 224599999999999999999976
Q ss_pred -CccEEEEEeCCCCCHHHHHHHHhCCCccccc-ccCCc
Q 002426 331 -NRGHVVLVQTPYEGAEECCKLLFAGVEPLVS-QFTAS 366 (924)
Q Consensus 331 -~~G~vill~~~~~~~~~~~~l~~~~~~pL~S-~~~~~ 366 (924)
..|.|++++.. +...+.+++...+.++++ .+.+.
T Consensus 433 g~~G~v~~l~~~--d~~~~~~~~~~~~~~i~~~~l~p~ 468 (677)
T 3rc3_A 433 FKEGEVTTMNHE--DLSLLKEILKRPVDPIRAAGLHPT 468 (677)
T ss_dssp CSSEEEEESSTT--HHHHHHHHHHSCCCCCCCEEECCC
T ss_pred CCCEEEEEEecc--hHHHHHHHHhcCcchhhhccCCCh
Confidence 46888887654 445678889999888887 34443
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=5.1e-24 Score=254.26 Aligned_cols=221 Identities=19% Similarity=0.138 Sum_probs=155.4
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhC-------CCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCC-CCc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANA-DELAGWIGQIHGKTELITSS-RRP 90 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~l-------p~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~-~Rp 90 (924)
.++++++|||||||.|.+.+|+..++.++..+ ++.+|+|+||||+++. .+++.|+......+.+.... ..+
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 47889999999999999999999999987765 3478999999999984 66666554321111111110 001
Q ss_pred cc---ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhh
Q 002426 91 VP---LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 167 (924)
Q Consensus 91 vp---L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (924)
.. +.+.+.... . ...
T Consensus 303 ~~~~~~~~~~~~~~-------~------------------------------------------------------~~~- 320 (563)
T 3i5x_A 303 EAHERIDQSVVISE-------K------------------------------------------------------FAN- 320 (563)
T ss_dssp SSCTTEEEEEEEES-------S------------------------------------------------------TTH-
T ss_pred cccccCceEEEECc-------h------------------------------------------------------hHh-
Confidence 00 000000000 0 000
Q ss_pred hhhhhccCchhHHH-HHHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHH
Q 002426 168 INAIRRSQVPQVID-TLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245 (924)
Q Consensus 168 ~~~~~~~~~~~~~~-~l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~ 245 (924)
....... +...+.. ....++||||+|++.|+.++..|....
T Consensus 321 -------~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~------------------------------ 363 (563)
T 3i5x_A 321 -------SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF------------------------------ 363 (563)
T ss_dssp -------HHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHH------------------------------
T ss_pred -------hHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhc------------------------------
Confidence 0001111 1222222 445689999999999999999886320
Q ss_pred hhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccC
Q 002426 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325 (924)
Q Consensus 246 ~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAG 325 (924)
.-...++.|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+||||
T Consensus 364 -~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 364 -KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYIHRIGRTA 434 (563)
T ss_dssp -TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHHHHHTTSS
T ss_pred -cCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchhhhhhhcCccc
Confidence 00136889999999999999999999999999999999999999999999998 778899999999999999
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHH
Q 002426 326 RRGIDNRGHVVLVQTPYEGAEECCKL 351 (924)
Q Consensus 326 R~G~D~~G~vill~~~~~~~~~~~~l 351 (924)
|.| ..|.|++++.+.+ ...+..+
T Consensus 435 R~g--~~g~~i~~~~~~e-~~~~~~l 457 (563)
T 3i5x_A 435 RSG--KEGSSVLFICKDE-LPFVREL 457 (563)
T ss_dssp CTT--CCEEEEEEEEGGG-HHHHHHH
T ss_pred cCC--CCceEEEEEchhH-HHHHHHH
Confidence 999 7899998887644 3333333
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=7e-24 Score=241.82 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=149.1
Q ss_pred CCCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCC--CCcccce
Q 002426 19 SGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSS--RRPVPLT 94 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~--~RpvpL~ 94 (924)
-.+.++++||+||+|.+.+ ..+...+..+...++.+.|+|++|||+++. ..+...... .+..+.... ..+..+.
T Consensus 164 ~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 241 (412)
T 3fht_A 164 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP--DPNVIKLKREEETLDTIK 241 (412)
T ss_dssp SCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS--SCEEECCCGGGSSCTTEE
T ss_pred cChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcC--CCeEEeeccccccccCce
Confidence 3468999999999999876 567777777788889999999999999863 344443321 111111110 0011111
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+++....
T Consensus 242 ~~~~~~~------------------------------------------------------------------------- 248 (412)
T 3fht_A 242 QYYVLCS------------------------------------------------------------------------- 248 (412)
T ss_dssp EEEEECS-------------------------------------------------------------------------
T ss_pred EEEEEcC-------------------------------------------------------------------------
Confidence 1110000
Q ss_pred CchhHHHHH-HHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 175 QVPQVIDTL-WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 175 ~~~~~~~~l-~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
........+ ..+......++||||+|++.|+.++..|...++ +++
T Consensus 249 ~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------~~~ 294 (412)
T 3fht_A 249 SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH----------------------------------QVA 294 (412)
T ss_dssp SHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CCE
T ss_pred ChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC----------------------------------eEE
Confidence 000111112 222233456899999999999999999875432 689
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc------CCHHHHHHHhcccCCC
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRR 327 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p------ls~~ey~Qm~GRAGR~ 327 (924)
++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.| .+..+|+||+|||||.
T Consensus 295 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~~~~s~~~~~Qr~GR~gR~ 366 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKDGNPDNETYLHRIGRTGRF 366 (412)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSSSSBCHHHHHHHHTTSSCT
T ss_pred EecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCCCCcchheeecccCcccCC
Confidence 9999999999999999999999999999999999999999999998 4444 6789999999999999
Q ss_pred CCCCccEEEEEeCCCC
Q 002426 328 GIDNRGHVVLVQTPYE 343 (924)
Q Consensus 328 G~D~~G~vill~~~~~ 343 (924)
| ..|.+++++++.+
T Consensus 367 g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 367 G--KRGLAVNMVDSKH 380 (412)
T ss_dssp T--CCEEEEEEECSHH
T ss_pred C--CCceEEEEEcChh
Confidence 9 7899999987644
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=1.9e-23 Score=236.44 Aligned_cols=209 Identities=22% Similarity=0.262 Sum_probs=151.5
Q ss_pred CCCCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
...+.++++||+||+|.+.+ ..++..+..+...++.+.|+|++|||+++. ..+..++........+......+..+.+
T Consensus 140 ~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (395)
T 3pey_A 140 LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQ 219 (395)
T ss_dssp CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEE
T ss_pred CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccE
Confidence 34588999999999999876 567788888888889999999999999863 5555554321111111111111111111
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
.+.... .
T Consensus 220 ~~~~~~-------------------------------------------------------------------------~ 226 (395)
T 3pey_A 220 LYMDCK-------------------------------------------------------------------------N 226 (395)
T ss_dssp EEEECS-------------------------------------------------------------------------S
T ss_pred EEEEcC-------------------------------------------------------------------------c
Confidence 110000 0
Q ss_pred chhHHHHHHHHH-hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~l~-~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.......+..+. .....++||||++++.|+.+++.|...++ .+.+
T Consensus 227 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~----------------------------------~~~~ 272 (395)
T 3pey_A 227 EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH----------------------------------EVSI 272 (395)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC----------------------------------CCEE
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC----------------------------------cEEE
Confidence 001122223322 23446899999999999999999875432 6889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccC------CHHHHHHHhcccCCCC
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL------TSNELFQMAGRAGRRG 328 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pl------s~~ey~Qm~GRAGR~G 328 (924)
+||++++.+|..+++.|++|.++|||||+++++|||+|+.++||+ ++.|. ++.+|+||+|||||.|
T Consensus 273 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~~~~s~~~~~Qr~GR~gR~g 344 (395)
T 3pey_A 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTLANGQADPATYIHRIGRTGRFG 344 (395)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBCTTSSBCHHHHHHHHTTSSCTT
T ss_pred eCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCCCcCCCCHHHhhHhccccccCC
Confidence 999999999999999999999999999999999999999999998 33444 9999999999999999
Q ss_pred CCCccEEEEEeCCCC
Q 002426 329 IDNRGHVVLVQTPYE 343 (924)
Q Consensus 329 ~D~~G~vill~~~~~ 343 (924)
..|.+++++.+..
T Consensus 345 --~~g~~~~~~~~~~ 357 (395)
T 3pey_A 345 --RKGVAISFVHDKN 357 (395)
T ss_dssp --CCEEEEEEECSHH
T ss_pred --CCceEEEEEechH
Confidence 6899998887644
No 14
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=243.38 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=139.7
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccC-CceEEecCCC--CcccceE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKTELITSSR--RPVPLTW 95 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~-~~~~vv~s~~--RpvpL~~ 95 (924)
..+..+++||+||+|.+.+.+++..+..++..++++.|+|+||||+++ .+..++...- .+..+..... .+..+.+
T Consensus 179 ~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (414)
T 3eiq_A 179 LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS--DVLEVTKKFMRDPIRILVKKEELTLEGIRQ 256 (414)
T ss_dssp SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCH--HHHHHHTTTCSSCEEECCCCCCCCTTSCCE
T ss_pred cccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH--HHHHHHHHHcCCCEEEEecCCccCCCCceE
Confidence 457789999999999999889999999999999999999999999983 3333333221 1222211110 0111111
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
++.... .
T Consensus 257 ~~~~~~-------------------------------------------------------------------------~ 263 (414)
T 3eiq_A 257 FYINVE-------------------------------------------------------------------------R 263 (414)
T ss_dssp EEEECS-------------------------------------------------------------------------S
T ss_pred EEEEeC-------------------------------------------------------------------------h
Confidence 110000 0
Q ss_pred chhHHHHHHH-HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWH-LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~-l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.......+.. +......++||||++++.|+.+++.|...++ +++.
T Consensus 264 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~----------------------------------~~~~ 309 (414)
T 3eiq_A 264 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF----------------------------------TVSA 309 (414)
T ss_dssp STTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTC----------------------------------CCEE
T ss_pred HHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC----------------------------------eEEE
Confidence 0001122222 3334556899999999999999999875442 6889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.
T Consensus 310 ~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~ 379 (414)
T 3eiq_A 310 MHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YDLPTNRENYIHRIGRGGRFG--RKGV 379 (414)
T ss_dssp C---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SSCCSSTHHHHHHSCCC---------C
T ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eCCCCCHHHhhhhcCcccCCC--CCce
Confidence 999999999999999999999999999999999999999999998 778899999999999999999 6899
Q ss_pred EEEEeCCCC
Q 002426 335 VVLVQTPYE 343 (924)
Q Consensus 335 vill~~~~~ 343 (924)
|++++++.+
T Consensus 380 ~~~~~~~~~ 388 (414)
T 3eiq_A 380 AINMVTEED 388 (414)
T ss_dssp EEEEECSTH
T ss_pred EEEEEcHHH
Confidence 998887643
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.90 E-value=1.3e-23 Score=240.20 Aligned_cols=208 Identities=16% Similarity=0.271 Sum_probs=153.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccC-CceEEecCCC--Ccccce
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKTELITSSR--RPVPLT 94 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~-~~~~vv~s~~--RpvpL~ 94 (924)
...+.++++||+||+|.+.+.++...+..++..+++..|++++|||++ .++.+++...- .+..+..... .+..+.
T Consensus 174 ~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (410)
T 2j0s_A 174 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP--HEILEMTNKFMTDPIRILVKRDELTLEGIK 251 (410)
T ss_dssp SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC--HHHHTTGGGTCSSCEEECCCGGGCSCTTEE
T ss_pred CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC--HHHHHHHHHHcCCCEEEEecCccccCCCce
Confidence 345788999999999999998999999999999999999999999998 34444443221 1222211100 000111
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
+++.... ....
T Consensus 252 ~~~~~~~---------------------------------------------------------------~~~~------ 262 (410)
T 2j0s_A 252 QFFVAVE---------------------------------------------------------------REEW------ 262 (410)
T ss_dssp EEEEEES---------------------------------------------------------------STTH------
T ss_pred EEEEEeC---------------------------------------------------------------cHHh------
Confidence 1110000 0000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
....+.++ +......++||||+|++.|+.+++.|...++ ++..
T Consensus 263 k~~~l~~~---~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~ 305 (410)
T 2j0s_A 263 KFDTLCDL---YDTLTITQAVIFCNTKRKVDWLTEKMREANF----------------------------------TVSS 305 (410)
T ss_dssp HHHHHHHH---HHHHTSSEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CCEE
T ss_pred HHHHHHHH---HHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC----------------------------------ceEE
Confidence 00111222 2223345899999999999999999875443 6889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.
T Consensus 306 ~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~ 375 (410)
T 2j0s_A 306 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YDLPNNRELYIHRIGRSGRYG--RKGV 375 (410)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEE
T ss_pred eeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE--------ECCCCCHHHHHHhcccccCCC--CceE
Confidence 999999999999999999999999999999999999999999999 778899999999999999999 7899
Q ss_pred EEEEeCCCC
Q 002426 335 VVLVQTPYE 343 (924)
Q Consensus 335 vill~~~~~ 343 (924)
++++.++.+
T Consensus 376 ~~~~~~~~~ 384 (410)
T 2j0s_A 376 AINFVKNDD 384 (410)
T ss_dssp EEEEEEGGG
T ss_pred EEEEecHHH
Confidence 998887643
No 16
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.90 E-value=5.3e-23 Score=234.16 Aligned_cols=206 Identities=19% Similarity=0.225 Sum_probs=153.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc-CCceEEecCC-CCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSS-RRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s~-~RpvpL~~ 95 (924)
...+.++++||+||+|.+.+..++..++.++..+++..|+++||||++ ..+.+|+... ..+..+.... ..+..+.+
T Consensus 158 ~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (400)
T 1s2m_A 158 VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP--LTVKEFMVKHLHKPYEINLMEELTLKGITQ 235 (400)
T ss_dssp CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC--HHHHHHHHHHCSSCEEESCCSSCBCTTEEE
T ss_pred CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC--HHHHHHHHHHcCCCeEEEeccccccCCcee
Confidence 345789999999999999988888889988888998999999999998 4444444322 1122111111 00011111
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
++....
T Consensus 236 ~~~~~~-------------------------------------------------------------------------- 241 (400)
T 1s2m_A 236 YYAFVE-------------------------------------------------------------------------- 241 (400)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 110000
Q ss_pred chhHHHHHH-HHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLW-HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~-~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.......+. .+......++||||+|++.|+.+++.|...+ .++.+
T Consensus 242 ~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------~~~~~ 287 (400)
T 1s2m_A 242 ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG----------------------------------YSCYY 287 (400)
T ss_dssp GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT----------------------------------CCEEE
T ss_pred hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC----------------------------------CCeEE
Confidence 000011122 2233455689999999999999999886433 26889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
+||++++.+|..+++.|++|.++|||||+++++|+|+|+.++||+ ++.|.++.+|+||+|||||.| ..|.
T Consensus 288 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~ 357 (400)
T 1s2m_A 288 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FDFPKTAETYLHRIGRSGRFG--HLGL 357 (400)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHCBSSCTT--CCEE
T ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE--------eCCCCCHHHHHHhcchhcCCC--CCce
Confidence 999999999999999999999999999999999999999999998 778899999999999999999 6899
Q ss_pred EEEEeCCCC
Q 002426 335 VVLVQTPYE 343 (924)
Q Consensus 335 vill~~~~~ 343 (924)
|+++.++.+
T Consensus 358 ~~~l~~~~~ 366 (400)
T 1s2m_A 358 AINLINWND 366 (400)
T ss_dssp EEEEECGGG
T ss_pred EEEEeccch
Confidence 999887654
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.4e-22 Score=226.91 Aligned_cols=202 Identities=18% Similarity=0.303 Sum_probs=153.6
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH--HHHHHHhcccCCceEEecCCCCcccceEE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWY 96 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~--~e~a~wL~~~~~~~~vv~s~~RpvpL~~~ 96 (924)
..+.++++||+||+|.+.+.++...+..++..+++..+++++|||+++. ..+..+++ ....+.... +.++.+.
T Consensus 143 ~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~ 217 (367)
T 1hv8_A 143 LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMG----DYSFIKAKI-NANIEQS 217 (367)
T ss_dssp SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC----SEEEEECCS-SSSSEEE
T ss_pred cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC----CCeEEEecC-CCCceEE
Confidence 4578999999999999998888899999998999999999999999853 22233332 122221111 1122221
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
+.... .
T Consensus 218 ~~~~~--------------------------------------------------------------------------~ 223 (367)
T 1hv8_A 218 YVEVN--------------------------------------------------------------------------E 223 (367)
T ss_dssp EEECC--------------------------------------------------------------------------G
T ss_pred EEEeC--------------------------------------------------------------------------h
Confidence 11000 0
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 177 ~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
......+..+......++||||+|++.|+.+++.|...++ ++..+|
T Consensus 224 ~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~ 269 (367)
T 1hv8_A 224 NERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF----------------------------------KAGAIH 269 (367)
T ss_dssp GGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEEC
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC----------------------------------CeEEee
Confidence 0111222333334556899999999999999999875432 688999
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
|++++.+|..+++.|++|.++|||||+++++|+|+|+.++||. ++.|.++.+|+||+|||||.| ..|.++
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~~~~s~~~~~Q~~GR~~R~g--~~g~~~ 339 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YHLPQNPESYMHRIGRTGRAG--KKGKAI 339 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SSCCSCHHHHHHHSTTTCCSS--SCCEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ecCCCCHHHhhhcccccccCC--CccEEE
Confidence 9999999999999999999999999999999999999999998 678899999999999999999 689999
Q ss_pred EEeCCCC
Q 002426 337 LVQTPYE 343 (924)
Q Consensus 337 ll~~~~~ 343 (924)
++.++.+
T Consensus 340 ~~~~~~~ 346 (367)
T 1hv8_A 340 SIINRRE 346 (367)
T ss_dssp EEECTTS
T ss_pred EEEcHHH
Confidence 8887644
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=9.5e-23 Score=240.95 Aligned_cols=210 Identities=21% Similarity=0.290 Sum_probs=153.5
Q ss_pred CCccEEEEccccccCCCC--chHHHHHH---HHhCCCCccEEEEcccCCCH--HHHHHHhcccCCceEEecCCCCcccce
Q 002426 22 FDVDVIVLDEVHYLSDIS--RGTVWEEI---IIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~--RG~v~Eei---i~~lp~~~qiV~LSATi~N~--~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
.++++||+||+|.+.+.+ +.+.+..+ ...+| ++++++||||.++. .++..|++.. .+...+.+..|| .+.
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~r~-~l~ 214 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLN-DPLIQISSFDRP-NIR 214 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCC-SCEEEECCCCCT-TEE
T ss_pred CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCC-CCeEEeCCCCCC-ceE
Confidence 689999999999998643 44444433 33444 68999999999874 6788888643 222233332233 111
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
..+...
T Consensus 215 ~~v~~~-------------------------------------------------------------------------- 220 (523)
T 1oyw_A 215 YMLMEK-------------------------------------------------------------------------- 220 (523)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEeC--------------------------------------------------------------------------
Confidence 111000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 175 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
......++..+......++||||+|++.|+.+++.|...++ .++.
T Consensus 221 -~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~----------------------------------~~~~ 265 (523)
T 1oyw_A 221 -FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI----------------------------------SAAA 265 (523)
T ss_dssp -SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC----------------------------------CEEE
Confidence 00011123333344556899999999999999999975443 6889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccE
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
|||+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..|.
T Consensus 266 ~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~~p~s~~~y~Qr~GRaGR~g--~~~~ 335 (523)
T 1oyw_A 266 YHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNIESYYQETGRAGRDG--LPAE 335 (523)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCSSHHHHHHHHTTSCTTS--SCEE
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------ECCCCCHHHHHHHhccccCCC--CCce
Confidence 999999999999999999999999999999999999999999999 778999999999999999999 6899
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 002426 335 VVLVQTPYEGAEECCKLLFA 354 (924)
Q Consensus 335 vill~~~~~~~~~~~~l~~~ 354 (924)
+++++++.+ ......++..
T Consensus 336 ~~l~~~~~d-~~~~~~~~~~ 354 (523)
T 1oyw_A 336 AMLFYDPAD-MAWLRRCLEE 354 (523)
T ss_dssp EEEEECHHH-HHHHHHHHHT
T ss_pred EEEEeCHHH-HHHHHHHHhc
Confidence 999887533 3333344443
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.90 E-value=4.7e-23 Score=235.74 Aligned_cols=204 Identities=19% Similarity=0.181 Sum_probs=148.0
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHh--CCC--CccEEEEcccCCCH-HHHHH-HhcccCCceEEecCCC--Cc
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPK--EVQIICLSATVANA-DELAG-WIGQIHGKTELITSSR--RP 90 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~--lp~--~~qiV~LSATi~N~-~e~a~-wL~~~~~~~~vv~s~~--Rp 90 (924)
-.+.++++||+||+|.+.+.+++..++.++.. ++. ..|++++|||+++. .++.. |+. .+..+..... .+
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 247 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD---EYIFLAVGRVGSTS 247 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS---SCEEEEEC----CC
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC---CCEEEEeCCCCCCc
Confidence 35789999999999999988899999888874 343 68999999999853 33443 332 1222111110 11
Q ss_pred ccceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhh
Q 002426 91 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 170 (924)
Q Consensus 91 vpL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (924)
..+.+.+....
T Consensus 248 ~~i~~~~~~~~--------------------------------------------------------------------- 258 (417)
T 2i4i_A 248 ENITQKVVWVE--------------------------------------------------------------------- 258 (417)
T ss_dssp SSEEEEEEECC---------------------------------------------------------------------
T ss_pred cCceEEEEEec---------------------------------------------------------------------
Confidence 11111110000
Q ss_pred hhccCchhHHHHHHH-HHhC-CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhh
Q 002426 171 IRRSQVPQVIDTLWH-LRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248 (924)
Q Consensus 171 ~~~~~~~~~~~~l~~-l~~~-~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L 248 (924)
.......+.. +... ...++||||+|++.|+.+++.|...++
T Consensus 259 -----~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-------------------------------- 301 (417)
T 2i4i_A 259 -----ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-------------------------------- 301 (417)
T ss_dssp -----GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC--------------------------------
T ss_pred -----cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC--------------------------------
Confidence 0000111222 2222 346899999999999999999875442
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 249 ~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
.+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.|
T Consensus 302 --~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 302 --ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp --CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCSSHHHHHHHHTTBCC--
T ss_pred --CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCCCHHHHHHhcCccccCC
Confidence 6889999999999999999999999999999999999999999999999 778899999999999999999
Q ss_pred CCCccEEEEEeCCCC
Q 002426 329 IDNRGHVVLVQTPYE 343 (924)
Q Consensus 329 ~D~~G~vill~~~~~ 343 (924)
..|.|+++.++.+
T Consensus 372 --~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 372 --NLGLATSFFNERN 384 (417)
T ss_dssp --CCEEEEEEECGGG
T ss_pred --CCceEEEEEcccc
Confidence 6799998887644
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=8.7e-23 Score=231.28 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=152.9
Q ss_pred CCCCCCccEEEEccccccCCC-CchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHH-HhcccCCceEEecCCC-C--cc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVANA-DELAG-WIGQIHGKTELITSSR-R--PV 91 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~-~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~-wL~~~~~~~~vv~s~~-R--pv 91 (924)
...+.++++||+||+|.+.+. .+...+..++..++...|++++|||+++. .++.. |+. .+..+..... . +.
T Consensus 147 ~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 223 (391)
T 1xti_A 147 SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ---DPMEIFVDDETKLTLH 223 (391)
T ss_dssp SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS---SCEEEECCCCCCCCCT
T ss_pred CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC---CCeEEEecCccccCcc
Confidence 345789999999999999873 56667777777888899999999999973 44433 332 2222222111 1 01
Q ss_pred cceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhh
Q 002426 92 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171 (924)
Q Consensus 92 pL~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (924)
.+.+++.... .
T Consensus 224 ~~~~~~~~~~---------------------------------------------------------------~------ 234 (391)
T 1xti_A 224 GLQQYYVKLK---------------------------------------------------------------D------ 234 (391)
T ss_dssp TCEEEEEECC---------------------------------------------------------------G------
T ss_pred cceEEEEEcC---------------------------------------------------------------c------
Confidence 1111110000 0
Q ss_pred hccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccc
Q 002426 172 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG 251 (924)
Q Consensus 172 ~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~G 251 (924)
......+...+......++||||+|++.|+.+++.|...++ .
T Consensus 235 ----~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------~ 276 (391)
T 1xti_A 235 ----NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF----------------------------------P 276 (391)
T ss_dssp ----GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC----------------------------------C
T ss_pred ----hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC----------------------------------c
Confidence 00011112223334557899999999999999999875442 5
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCC
Q 002426 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 331 (924)
Q Consensus 252 Va~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~ 331 (924)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|+.++||. ++.|.++.+|+||+|||||.| .
T Consensus 277 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~~p~s~~~~~Qr~GR~~R~g--~ 346 (391)
T 1xti_A 277 AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPEDSDTYLHRVARAGRFG--T 346 (391)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SSCCSSHHHHHHHHCBCSSSC--C
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHHHHhcccccCCC--C
Confidence 788999999999999999999999999999999999999999999999 778899999999999999999 7
Q ss_pred ccEEEEEeCCCCC
Q 002426 332 RGHVVLVQTPYEG 344 (924)
Q Consensus 332 ~G~vill~~~~~~ 344 (924)
.|.|+++.++.++
T Consensus 347 ~g~~~~~~~~~~~ 359 (391)
T 1xti_A 347 KGLAITFVSDEND 359 (391)
T ss_dssp CCEEEEEECSHHH
T ss_pred ceEEEEEEcccch
Confidence 8999999877543
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.90 E-value=7.3e-23 Score=244.78 Aligned_cols=204 Identities=20% Similarity=0.218 Sum_probs=149.9
Q ss_pred CCCccEEEEccccccCCCC--chHHHHH--HHHhCCCCccEEEEcccCCCH--HHHHHHhcccCCceEEecCCCCcccce
Q 002426 21 LFDVDVIVLDEVHYLSDIS--RGTVWEE--IIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLT 94 (924)
Q Consensus 21 L~~v~~VVlDE~H~l~D~~--RG~v~Ee--ii~~lp~~~qiV~LSATi~N~--~e~a~wL~~~~~~~~vv~s~~RpvpL~ 94 (924)
+.++++|||||||.+.+.+ +.+.+.. .+....+++++|+||||+++. .++..|++.. . ..++...+....+.
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~-~-~~~~~~~~~r~nl~ 240 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE-K-CFTFTASFNRPNLY 240 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCC-S-CEEEECCCCCTTEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCC-C-cEEEecCCCCcccE
Confidence 4589999999999998754 5555544 333445579999999999864 6677787642 2 22222222211222
Q ss_pred EEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhcc
Q 002426 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 174 (924)
Q Consensus 95 ~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (924)
..+.... .
T Consensus 241 ~~v~~~~------------------------------------------------------------------------~ 248 (591)
T 2v1x_A 241 YEVRQKP------------------------------------------------------------------------S 248 (591)
T ss_dssp EEEEECC------------------------------------------------------------------------S
T ss_pred EEEEeCC------------------------------------------------------------------------C
Confidence 1111000 0
Q ss_pred CchhHHH-HHHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccce
Q 002426 175 QVPQVID-TLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252 (924)
Q Consensus 175 ~~~~~~~-~l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GV 252 (924)
....... ++..+.. ....++||||+|++.|+.+++.|...++ ++
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~----------------------------------~~ 294 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI----------------------------------HA 294 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CE
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC----------------------------------CE
Confidence 0001111 2222322 2456899999999999999999975443 68
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCc
Q 002426 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332 (924)
Q Consensus 253 a~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~ 332 (924)
+++||||++.+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.+..+|+||+|||||.| ..
T Consensus 295 ~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~s~~~y~Qr~GRaGR~G--~~ 364 (591)
T 2v1x_A 295 GAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSKSMENYYQESGRAGRDD--MK 364 (591)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCSSHHHHHHHHTTSCTTS--SC
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eCCCCCHHHHHHHhccCCcCC--CC
Confidence 89999999999999999999999999999999999999999999999 788999999999999999998 68
Q ss_pred cEEEEEeCCC
Q 002426 333 GHVVLVQTPY 342 (924)
Q Consensus 333 G~vill~~~~ 342 (924)
|.|++++++.
T Consensus 365 g~~i~l~~~~ 374 (591)
T 2v1x_A 365 ADCILYYGFG 374 (591)
T ss_dssp EEEEEEECHH
T ss_pred ceEEEEEChH
Confidence 9999998653
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=1.5e-22 Score=242.46 Aligned_cols=214 Identities=19% Similarity=0.149 Sum_probs=151.9
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCC-------CCccEEEEcccCCCH-HHHHHHhcccCCceEEecCCC-Cc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-------KEVQIICLSATVANA-DELAGWIGQIHGKTELITSSR-RP 90 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp-------~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~~-Rp 90 (924)
.++.+++|||||||.|.+.+++..++.++..++ ..+|+++||||+++. .+++.|+........+..... .+
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 478899999999999999999999998877653 378999999999974 556555542211111111000 00
Q ss_pred cc---ceEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhh
Q 002426 91 VP---LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 167 (924)
Q Consensus 91 vp---L~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (924)
.. +.+.+.... . ...
T Consensus 252 ~~~~~i~~~~~~~~-------~------------------------------------------------------~~~- 269 (579)
T 3sqw_A 252 EAHERIDQSVVISE-------K------------------------------------------------------FAN- 269 (579)
T ss_dssp SSCTTEEEEEEEES-------S------------------------------------------------------TTH-
T ss_pred ccccccceEEEEec-------c------------------------------------------------------hhh-
Confidence 00 000000000 0 000
Q ss_pred hhhhhccCchhHHHH-HHHHHh-CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHH
Q 002426 168 INAIRRSQVPQVIDT-LWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI 245 (924)
Q Consensus 168 ~~~~~~~~~~~~~~~-l~~l~~-~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~ 245 (924)
........ ...+.. ....++||||+|+..|+.++..|....
T Consensus 270 -------~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~------------------------------ 312 (579)
T 3sqw_A 270 -------SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF------------------------------ 312 (579)
T ss_dssp -------HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHH------------------------------
T ss_pred -------hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhh------------------------------
Confidence 00011111 222222 345689999999999999999886320
Q ss_pred hhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccC
Q 002426 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 325 (924)
Q Consensus 246 ~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAG 325 (924)
.-...++.+||+|++.+|..++..|++|.++|||||+++++|||+|.+++||+ ++.|.++..|+||+||||
T Consensus 313 -~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 313 -KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYIHRIGRTA 383 (579)
T ss_dssp -TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHHHHHTTSS
T ss_pred -cCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHHhhhhccccc
Confidence 00136889999999999999999999999999999999999999999999999 778899999999999999
Q ss_pred CCCCCCccEEEEEeCCCC
Q 002426 326 RRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 326 R~G~D~~G~vill~~~~~ 343 (924)
|.| ..|.|++++.+.+
T Consensus 384 R~g--~~g~~i~~~~~~e 399 (579)
T 3sqw_A 384 RSG--KEGSSVLFICKDE 399 (579)
T ss_dssp CTT--CCEEEEEEEEGGG
T ss_pred cCC--CCceEEEEEcccH
Confidence 999 6899998887643
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.89 E-value=1.4e-24 Score=254.09 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=45.2
Q ss_pred CCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCCH-HHHHHHhcccCCceEEecCC--CCcccceE
Q 002426 20 GLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSS--RRPVPLTW 95 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e~a~wL~~~~~~~~vv~s~--~RpvpL~~ 95 (924)
.+.++++|||||+|.|.+ ..+...+..++..++.++|+|++|||+++. ..++..... .+..+.... ..+..+.+
T Consensus 232 ~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~ 309 (479)
T 3fmp_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP--DPNVIKLKREEETLDTIKQ 309 (479)
T ss_dssp CGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSS--SEEEEEEC-----------
T ss_pred CcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcC--CCeEEeccccccCcCCceE
Confidence 458999999999999986 456666667777788899999999999963 445544321 111111111 01111111
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
++.... .
T Consensus 310 ~~~~~~-------~------------------------------------------------------------------ 316 (479)
T 3fmp_B 310 YYVLCS-------S------------------------------------------------------------------ 316 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeC-------C------------------------------------------------------------------
Confidence 110000 0
Q ss_pred chhHHHHHH-HHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLW-HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~-~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
.......+. .+......++||||+|+..|+.++..|...+ .++++
T Consensus 317 ~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~----------------------------------~~v~~ 362 (479)
T 3fmp_B 317 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG----------------------------------HQVAL 362 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC----------------------------------ccEEE
Confidence 000000111 1112234589999999999999998886432 26889
Q ss_pred EcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc------CCHHHHHHHhcccCCCC
Q 002426 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRG 328 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p------ls~~ey~Qm~GRAGR~G 328 (924)
|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.| .+..+|+||+|||||.|
T Consensus 363 lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~~~~s~~~~~Qr~GRagR~g 434 (479)
T 3fmp_B 363 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKDGNPDNETYLHRIGRTGRFG 434 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCccCCCHHHHHHHhcccccCC
Confidence 999999999999999999999999999999999999999999998 4455 56789999999999999
Q ss_pred CCCccEEEEEeCCCC
Q 002426 329 IDNRGHVVLVQTPYE 343 (924)
Q Consensus 329 ~D~~G~vill~~~~~ 343 (924)
..|.|++++++.+
T Consensus 435 --~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 435 --KRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------
T ss_pred --CCceEEEEEcCcc
Confidence 7899998887654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.5e-23 Score=245.35 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=138.5
Q ss_pred CCCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhcccCCceEEecCCCCcccceEE
Q 002426 19 SGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWY 96 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~~~~~~~~vv~s~~RpvpL~~~ 96 (924)
-.+.++++||+||+|.+.+ ..++..+..+...++.+.|+|+||||+++ .+++..++......+.+......+..+.+.
T Consensus 255 ~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 334 (508)
T 3fho_A 255 LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL 334 (508)
T ss_dssp SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCE
T ss_pred ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEE
Confidence 3578999999999999987 67888898899999999999999999998 566776664321111100000000001100
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
+.... ..
T Consensus 335 ~~~~~-------------------------------------------------------------------------~~ 341 (508)
T 3fho_A 335 YMDCQ-------------------------------------------------------------------------SE 341 (508)
T ss_dssp EEEC---------------------------------------------------------------------------C
T ss_pred EEECC-------------------------------------------------------------------------ch
Confidence 00000 00
Q ss_pred hhHHHHHHH-HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 177 PQVIDTLWH-LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 177 ~~~~~~l~~-l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
......+.. +......++||||++++.|+.++..|...+ .+++.|
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~----------------------------------~~v~~~ 387 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG----------------------------------HTVACL 387 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT----------------------------------CCCCEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC----------------------------------CcEEEE
Confidence 011111222 222345699999999999999999887533 268899
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc------CCHHHHHHHhcccCCCCC
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p------ls~~ey~Qm~GRAGR~G~ 329 (924)
||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.| .++.+|+||+|||||.|
T Consensus 388 hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~--------~~~p~~~~~~~s~~~~~Qr~GRagR~g- 458 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN--------YDMPLDQAGRPDPQTYLHRIGRTGRFG- 458 (508)
T ss_dssp C-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC------------CC-----CTHHHHHTTSCCC----
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE--------ECCCCcccCCCCHHHHHHHhhhcCCCC-
Confidence 99999999999999999999999999999999999999999997 3444 78899999999999999
Q ss_pred CCccEEEEEeCCCCC---HHHHHHHHhCCCccc
Q 002426 330 DNRGHVVLVQTPYEG---AEECCKLLFAGVEPL 359 (924)
Q Consensus 330 D~~G~vill~~~~~~---~~~~~~l~~~~~~pL 359 (924)
..|.+++++.+.++ ...+.+++.....++
T Consensus 459 -~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 459 -RVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp ---CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred -CCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 78999988875443 334444444444433
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.9e-22 Score=221.84 Aligned_cols=195 Identities=15% Similarity=0.194 Sum_probs=148.6
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH--HHHHHHhcccCCceEEecCCCCcccceEE
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWY 96 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~--~e~a~wL~~~~~~~~vv~s~~RpvpL~~~ 96 (924)
..+.++++||+||+|.+.+.++...+..++..++...+++++|||+++. +.+..|+.. ...+.....+.++.+.
T Consensus 125 ~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 200 (337)
T 2z0m_A 125 IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITN----YEEIEACIGLANVEHK 200 (337)
T ss_dssp CCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCS----CEEEECSGGGGGEEEE
T ss_pred cchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCC----ceeeecccccCCceEE
Confidence 3478899999999999998889999999999999999999999999853 234444432 1111111111112211
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
+.... .
T Consensus 201 ~~~~~----------------------------------------------------------------~---------- 206 (337)
T 2z0m_A 201 FVHVK----------------------------------------------------------------D---------- 206 (337)
T ss_dssp EEECS----------------------------------------------------------------S----------
T ss_pred EEEeC----------------------------------------------------------------h----------
Confidence 11000 0
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 177 ~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
.....+..+......++||||+|++.|+.+++.|. .+..+|
T Consensus 207 -~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------------------------------------~~~~~~ 247 (337)
T 2z0m_A 207 -DWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD--------------------------------------NAIELR 247 (337)
T ss_dssp -SSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--------------------------------------TEEEEC
T ss_pred -HHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--------------------------------------hhhhhc
Confidence 00011233444566789999999999988877663 467899
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
|++++.+|..+++.|++|.++|||||+++++|+|+|+.++||. ++.|.++.+|+||+|||||.| ..|.++
T Consensus 248 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~~~~s~~~~~Q~~GR~gR~g--~~g~~~ 317 (337)
T 2z0m_A 248 GDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FDAPQDLRTYIHRIGRTGRMG--RKGEAI 317 (337)
T ss_dssp TTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SSCCSSHHHHHHHHTTBCGGG--CCEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ecCCCCHHHhhHhcCccccCC--CCceEE
Confidence 9999999999999999999999999999999999999999998 678899999999999999999 678888
Q ss_pred EEeC
Q 002426 337 LVQT 340 (924)
Q Consensus 337 ll~~ 340 (924)
++..
T Consensus 318 ~~~~ 321 (337)
T 2z0m_A 318 TFIL 321 (337)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8776
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.86 E-value=5e-23 Score=233.31 Aligned_cols=206 Identities=18% Similarity=0.232 Sum_probs=49.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH-HH-HHHHhcccCCceEEecCCCC--cccc
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DE-LAGWIGQIHGKTELITSSRR--PVPL 93 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~-~e-~a~wL~~~~~~~~vv~s~~R--pvpL 93 (924)
...+.++++||+||+|.+.+.+++..+..++..+++..|+++||||+++. .+ +..|+. .+..+...... +..+
T Consensus 157 ~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 233 (394)
T 1fuu_A 157 RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR---NPVRILVKKDELTLEGI 233 (394)
T ss_dssp SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC---SCEEEEECC--------
T ss_pred CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC---CCeEEEecCccccCCCc
Confidence 34578899999999999988889999999999999999999999999863 22 233332 22222211110 0000
Q ss_pred eEEecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhc
Q 002426 94 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 173 (924)
Q Consensus 94 ~~~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (924)
.+++.... ....
T Consensus 234 ~~~~~~~~---------------------------------------------------------------~~~~----- 245 (394)
T 1fuu_A 234 KQFYVNVE---------------------------------------------------------------EEEY----- 245 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEcC---------------------------------------------------------------chhh-----
Confidence 10000000 0000
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE
Q 002426 174 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 253 (924)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa 253 (924)
....+.+++. .....++||||+|++.|+.+++.|...++ ++.
T Consensus 246 -~~~~l~~~~~---~~~~~~~lVf~~~~~~~~~l~~~L~~~~~----------------------------------~~~ 287 (394)
T 1fuu_A 246 -KYECLTDLYD---SISVTQAVIFCNTRRKVEELTTKLRNDKF----------------------------------TVS 287 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHh---cCCCCcEEEEECCHHHHHHHHHHHHHcCC----------------------------------eEE
Confidence 0000111111 12345899999999999999988864322 578
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCcc
Q 002426 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 333 (924)
Q Consensus 254 ~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G 333 (924)
.+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|
T Consensus 288 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~~p~s~~~~~Qr~GR~~R~g--~~g 357 (394)
T 1fuu_A 288 AIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLPANKENYIHRIGRGGRFG--RKG 357 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHcCcccCCC--CCc
Confidence 8999999999999999999999999999999999999999999998 667889999999999999999 689
Q ss_pred EEEEEeCCC
Q 002426 334 HVVLVQTPY 342 (924)
Q Consensus 334 ~vill~~~~ 342 (924)
.|+++.++.
T Consensus 358 ~~~~~~~~~ 366 (394)
T 1fuu_A 358 VAINFVTNE 366 (394)
T ss_dssp ---------
T ss_pred eEEEEEchh
Confidence 999887664
No 27
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.86 E-value=9.4e-22 Score=241.72 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=155.2
Q ss_pred CCCCCCccEEEEccccc-cCCCCc-hHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecCCCCcccceE
Q 002426 18 ESGLFDVDVIVLDEVHY-LSDISR-GTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 95 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~-l~D~~R-G~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s~~RpvpL~~ 95 (924)
...+.++++|||||+|. +.|... -..+..+.... ++.|+|+||||+ |++.+++|++. +.++....++.|+.+
T Consensus 203 ~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~-~~~~l~~~~~~----~~vi~v~gr~~pv~~ 276 (773)
T 2xau_A 203 DHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATL-DAEKFQRYFND----APLLAVPGRTYPVEL 276 (773)
T ss_dssp STTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCS-CCHHHHHHTTS----CCEEECCCCCCCEEE
T ss_pred CccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccc-cHHHHHHHhcC----CCcccccCcccceEE
Confidence 34689999999999995 433221 12333344333 578999999999 68899999963 334555667778877
Q ss_pred EecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccC
Q 002426 96 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 175 (924)
Q Consensus 96 ~~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (924)
+|..... . . .
T Consensus 277 ~~~~~~~--------~----~----------------------------------------------------------~ 286 (773)
T 2xau_A 277 YYTPEFQ--------R----D----------------------------------------------------------Y 286 (773)
T ss_dssp ECCSSCC--------S----C----------------------------------------------------------H
T ss_pred EEecCCc--------h----h----------------------------------------------------------H
Confidence 6643210 0 0 0
Q ss_pred chhHHHHHHHH-HhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEE
Q 002426 176 VPQVIDTLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 254 (924)
Q Consensus 176 ~~~~~~~l~~l-~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~ 254 (924)
....+..+..+ ......++||||++++.|+.+++.|... +..+.. ........|++
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~--------------~~~l~~---------~~~~~~~~v~~ 343 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLE--------------GDQLVR---------EEGCGPLSVYP 343 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHH--------------HHHHHH---------HHCCCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHH--------------HHhhcc---------cccCCCeEEEE
Confidence 00112222222 2335679999999999999999988520 000000 00001235899
Q ss_pred EcCCCCHHHHHHHHHHhh-----CCCeeEEEEccccccccCCCCceEEEec-c---eecCCCCc------ccCCHHHHHH
Q 002426 255 HHAGCLPIWKSFIEELFQ-----RGLVKVVFATETLAAGINMPARTAVLSS-L---SKRTASGR------IQLTSNELFQ 319 (924)
Q Consensus 255 hH~gl~~~~R~~VE~lF~-----~G~ikVL~AT~tla~GINmPa~~VVI~~-~---~k~dg~~~------~pls~~ey~Q 319 (924)
|||+|++.+|..+++.|. +|.++|||||+++++|||+|++++||+. . ..||+... .|.+..+|+|
T Consensus 344 lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~Q 423 (773)
T 2xau_A 344 LYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 423 (773)
T ss_dssp ECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHH
T ss_pred eCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHh
Confidence 999999999999999999 9999999999999999999999999983 2 23554321 2899999999
Q ss_pred HhcccCCCCCCCccEEEEEeCC
Q 002426 320 MAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 320 m~GRAGR~G~D~~G~vill~~~ 341 (924)
|+|||||. ..|.||.++++
T Consensus 424 R~GRaGR~---~~G~~~~l~~~ 442 (773)
T 2xau_A 424 RAGRAGRT---RPGKCFRLYTE 442 (773)
T ss_dssp HHHGGGSS---SSEEEEESSCH
T ss_pred hccccCCC---CCCEEEEEecH
Confidence 99999998 48999998864
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=6.3e-21 Score=218.60 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=89.5
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE-EEcCCCCHHHHHHHHHH
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA-AHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa-~hH~gl~~~~R~~VE~l 270 (924)
.++||||+|+..|+.++..|...++ .++ .+||. .|+ +..
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~h~~----~r~--~~~ 292 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRFKF----------------------------------NVGETWSEF----EKN--FED 292 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTC----------------------------------CEEESSSCH----HHH--HHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC----------------------------------ceehhhcCc----chH--HHH
Confidence 6899999999999999999875443 455 67874 454 999
Q ss_pred hhCCCeeEEEE----ccccccccCCCC-ceEEEecceecCCCCccc--CCHHHHHHHhcccCCCCCC--CccEEEEEeCC
Q 002426 271 FQRGLVKVVFA----TETLAAGINMPA-RTAVLSSLSKRTASGRIQ--LTSNELFQMAGRAGRRGID--NRGHVVLVQTP 341 (924)
Q Consensus 271 F~~G~ikVL~A----T~tla~GINmPa-~~VVI~~~~k~dg~~~~p--ls~~ey~Qm~GRAGR~G~D--~~G~vill~~~ 341 (924)
|++|.++|||| |+++++|||+|+ +++||+ ++.| .++.+|+||+|||||.|.+ ..|.+++++.+
T Consensus 293 f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 293 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp HHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred HhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 99999999999 999999999999 899998 6788 8999999999999999977 58999998843
No 29
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.81 E-value=4.6e-20 Score=214.22 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=87.6
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .++.+||.+. ..++..
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~----------------------------------~~~~lh~~~~----~~~~~~ 229 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGK----------------------------------RVIQLSRKTF----DTEYPK 229 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTC----------------------------------CEEEECTTTH----HHHGGG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCC----------------------------------eEEECCHHHH----HHHHHh
Confidence 35899999999999999999875432 5677888654 578899
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEecc-e---e--cCCC------CcccCCHHHHHHHhcccCCCCCCCccEEEEE
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLSSL-S---K--RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~~~-~---k--~dg~------~~~pls~~ey~Qm~GRAGR~G~D~~G~vill 338 (924)
|++|.++|||||+++++|||+|+ ++||+.. . . |++. ++.|.+..+|+||+|||||.|.+ .|.++++
T Consensus 230 f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~~~~~ 307 (451)
T 2jlq_A 230 TKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDDQYVF 307 (451)
T ss_dssp GGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEE
T ss_pred hccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-CccEEEE
Confidence 99999999999999999999999 8888621 0 1 1111 12889999999999999999942 6778777
Q ss_pred eC
Q 002426 339 QT 340 (924)
Q Consensus 339 ~~ 340 (924)
..
T Consensus 308 ~~ 309 (451)
T 2jlq_A 308 SG 309 (451)
T ss_dssp CS
T ss_pred eC
Confidence 64
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.80 E-value=2.8e-19 Score=206.89 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .++.+|| .+|..++..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~----------------------------------~v~~lhg----~~R~~~~~~ 218 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGK----------------------------------SVVVLNR----KTFEREYPT 218 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEECCS----SSCC-----
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEEEecc----hhHHHHHhh
Confidence 45899999999999999999875432 5888999 468999999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEec-cee-----cCCC-----CcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLSS-LSK-----RTAS-----GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~~-~~k-----~dg~-----~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
|++|.++|||||+++++|||+| +++||+. +.+ +++. ++.|.+..+|+||+|||||.|. ..|.|+++.
T Consensus 219 F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~ 296 (440)
T 1yks_A 219 IKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN-RDGDSYYYS 296 (440)
T ss_dssp ---CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEEC
T ss_pred hcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC-CCceEEEEe
Confidence 9999999999999999999999 7777752 211 2222 5679999999999999999731 589999886
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=1.3e-18 Score=201.06 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC--------CCC
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA--------GCL 260 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~--------gl~ 260 (924)
....++||||+++..++.+++.|...++ .+..+|| +++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGI----------------------------------KAKRFVGQASKENDRGLS 404 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEEECCSSCC-------
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCC----------------------------------CcEEEeccccccccccCC
Confidence 4567999999999999999999875442 5677888 999
Q ss_pred HHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 261 ~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
+.+|..+++.|++|.++|||||++++.|||+|+.++||. ++.|.++..|.||+|||||.| . |.++.+..
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d~~~~~~~~~Qr~GR~~R~g--~-g~~~~l~~ 473 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEPVPSAIRSIQRRGRTGRHM--P-GRVIILMA 473 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSCCHHHHHHHHHHTTSCSCC--C-SEEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eCCCCCHHHHHHHHhhccCCC--C-ceEEEEEe
Confidence 999999999999999999999999999999999999998 777889999999999999999 3 99998877
Q ss_pred CCC
Q 002426 341 PYE 343 (924)
Q Consensus 341 ~~~ 343 (924)
+..
T Consensus 474 ~~t 476 (494)
T 1wp9_A 474 KGT 476 (494)
T ss_dssp TTS
T ss_pred cCC
Confidence 643
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=7.5e-20 Score=219.57 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .++.+||. +|..+++.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------------------~v~~lhg~----~R~~~l~~ 396 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK----------------------------------RVIQLSRK----TFDTEYPK 396 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTT----THHHHTTH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC----------------------------------cEEEEChH----HHHHHHHh
Confidence 45899999999999999999975443 57788974 78889999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEe-cceec-----C------CCCcccCCHHHHHHHhcccCCCCCCCccEEEEE
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLS-SLSKR-----T------ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k~-----d------g~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill 338 (924)
|++|.++|||||+++++|||+| ++.||+ +..+. + -.++.|.+..+|+||+|||||.|. ..|.++++
T Consensus 397 F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~ai~l 474 (618)
T 2whx_A 397 TKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVF 474 (618)
T ss_dssp HHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEE
T ss_pred hcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeEEEE
Confidence 9999999999999999999999 555543 33211 1 124679999999999999999973 37889988
Q ss_pred eC
Q 002426 339 QT 340 (924)
Q Consensus 339 ~~ 340 (924)
.+
T Consensus 475 ~~ 476 (618)
T 2whx_A 475 SG 476 (618)
T ss_dssp CS
T ss_pred cc
Confidence 86
No 33
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.78 E-value=2e-19 Score=209.24 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .++.+||. +|..++..
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~----------------------------------~v~~lh~~----~R~~~~~~ 231 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGK----------------------------------KVIQLNRK----SYDTEYPK 231 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEEESTT----CCCCCGGG
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCC----------------------------------cEEecCHH----HHHHHHhh
Confidence 46899999999999999999875443 56778884 78889999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEecc-e-----ecCCC------CcccCCHHHHHHHhcccCCCCCCCccEEEEE
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLSSL-S-----KRTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~~~-~-----k~dg~------~~~pls~~ey~Qm~GRAGR~G~D~~G~vill 338 (924)
|++|.++|||||+++++|||+|+ ++||+.- . .+++. ++.|.++.+|+||+|||||.|. ..|.++++
T Consensus 232 f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~ 309 (459)
T 2z83_A 232 CKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHY 309 (459)
T ss_dssp SSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEE
T ss_pred ccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEE
Confidence 99999999999999999999999 7777621 1 12221 5689999999999999999982 27889888
Q ss_pred eCCC
Q 002426 339 QTPY 342 (924)
Q Consensus 339 ~~~~ 342 (924)
+.+.
T Consensus 310 ~~~~ 313 (459)
T 2z83_A 310 GGAT 313 (459)
T ss_dssp CSCC
T ss_pred Eccc
Confidence 7653
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.78 E-value=3.4e-19 Score=211.37 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||+++..|+.+++.|....-.. . . ........+...+||||++.+|..++
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~---------------~-~------~~~~~~g~~~~~~~~~~~~~~R~~~~ 445 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILN---------------Y-I------KPGVLMGRGRRDQTTGMTLPSQKGVL 445 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGG---------------S-C------CEEC----------------------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcc---------------e-e------eeeEEEccCCcccccccCHHHHHHHH
Confidence 456799999999999999999997431000 0 0 00011234567789999999999999
Q ss_pred HHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 269 ELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 269 ~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
+.|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||. ..|.++++.++.
T Consensus 446 ~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 508 (556)
T 4a2p_A 446 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKT 508 (556)
T ss_dssp --------CCEEEEEC-----------CEEEE--------ETCCSCHHHHHHC------------CCEEEEESCH
T ss_pred HHhcccCceEEEEEcCchhcCCCchhCCEEEE--------eCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCc
Confidence 99999 99999999999999999999999999 7789999999999999 988 489999888663
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.78 E-value=8.7e-19 Score=202.24 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=87.1
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .++.+||+ +|+.++..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~v~~lhg~----~r~~~~~~ 212 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGK----------------------------------KVLYLNRK----TFESEYPK 212 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEESTT----THHHHTTH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC----------------------------------eEEEeCCc----cHHHHHHh
Confidence 45899999999999999998874432 68899997 68889999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEecceec--------CCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeC
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKR--------TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~--------dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~ 340 (924)
|++|.++|||||+++++|||+|..+||..+..+. .-.+..|.+..+|+||+|||||.|. ..|.++++..
T Consensus 213 f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~ 289 (431)
T 2v6i_A 213 CKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYSG 289 (431)
T ss_dssp HHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEECS
T ss_pred hcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEcC
Confidence 9999999999999999999999555543222221 1125678999999999999999983 2455666553
No 36
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=174.82 Aligned_cols=112 Identities=22% Similarity=0.195 Sum_probs=96.8
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
.....++||||+|+..|+.++..|...++ +++++||+|++.+|..+
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~~~~~~R~~~ 76 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDGH----------------------------------QVSLLSGELTVEQRASI 76 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTTC----------------------------------CEEEECSSCCHHHHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHHH
Confidence 34556899999999999999999875442 68999999999999999
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc------CCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p------ls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
+..|++|.++|||||+++++|+|+|+.++||+ ++.| .++.+|+||+|||||.| ..|.+++++++
T Consensus 77 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 146 (175)
T 2rb4_A 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--------FDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEV 146 (175)
T ss_dssp HHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE--------SSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECG
T ss_pred HHHHHcCCCeEEEEecchhcCCCcccCCEEEE--------eCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 99999999999999999999999999999998 5566 89999999999999999 78999988876
Q ss_pred CC
Q 002426 342 YE 343 (924)
Q Consensus 342 ~~ 343 (924)
.+
T Consensus 147 ~~ 148 (175)
T 2rb4_A 147 DE 148 (175)
T ss_dssp GG
T ss_pred ch
Confidence 44
No 37
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=1.5e-18 Score=174.95 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=103.0
Q ss_pred HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHH
Q 002426 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 265 (924)
Q Consensus 186 l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~ 265 (924)
+......++||||+|+..|+.++..|...++ +++.+||+|++.+|.
T Consensus 26 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 26 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNF----------------------------------PAIAIHRGMPQEERL 71 (172)
T ss_dssp HHHSCCSSEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHH
T ss_pred HHhCCCCcEEEEECCHHHHHHHHHHHHhcCC----------------------------------CEEEEECCCCHHHHH
Confidence 3344567999999999999999999875443 688999999999999
Q ss_pred HHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 266 ~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
.++..|++|.++|||||+++++|+|+|+.++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------ECCCCCHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 9999999999999999999999999999999999 778999999999999999999 6899999987644
No 38
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.77 E-value=3.7e-18 Score=170.33 Aligned_cols=113 Identities=22% Similarity=0.341 Sum_probs=101.8
Q ss_pred HhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHH
Q 002426 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 266 (924)
Q Consensus 187 ~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~ 266 (924)
......++||||+|+..|+.+++.|...++ .+..+||+|++.+|..
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDLGY----------------------------------PCDKIHGGMIQEDRFD 76 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHH
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHH
Confidence 334556899999999999999999875443 6889999999999999
Q ss_pred HHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 267 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 267 VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
++..|++|.++|||||+++++|+|+|..++||+ ++.|.++.+|+||+|||||.| ..|.+++++.+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YDLPLEKESYVHRTGRTGRAG--NKGKAISFVTAFE 143 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SSCCSSHHHHHHHTTTSSCTT--CCEEEEEEECGGG
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eCCCCCHHHHHHhccccCcCC--CCceEEEEecHHH
Confidence 999999999999999999999999999999999 778999999999999999999 6899998887643
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.77 E-value=2.6e-18 Score=219.46 Aligned_cols=199 Identities=18% Similarity=0.241 Sum_probs=140.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCCceEEecC-CCCcccceEE
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWY 96 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~~~~vv~s-~~RpvpL~~~ 96 (924)
.-.+.++++||+||+|.+ |....+.+..++.++++++||||.. +..+...+...+. ..++.+ .....++..+
T Consensus 720 ~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~-p~~l~~~~~~~~~-~~~i~~~~~~r~~i~~~ 792 (1151)
T 2eyq_A 720 DVKFKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPI-PRTLNMAMSGMRD-LSIIATPPARRLAVKTF 792 (1151)
T ss_dssp CCCCSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCC-CHHHHHHHTTTSE-EEECCCCCCBCBCEEEE
T ss_pred CccccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCC-hhhHHHHHhcCCC-ceEEecCCCCccccEEE
Confidence 456889999999999984 5666777888888899999999964 3444444443322 222211 1111122221
Q ss_pred ecccccccccccccccccchhhhhhhhhhccccCCCCcCCCCcccccccccCCCCCccccccccccCchhhhhhhhccCc
Q 002426 97 FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 176 (924)
Q Consensus 97 ~~~~~~l~~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (924)
+.... .
T Consensus 793 ~~~~~--------------------------------------------------------------------------~ 798 (1151)
T 2eyq_A 793 VREYD--------------------------------------------------------------------------S 798 (1151)
T ss_dssp EEECC--------------------------------------------------------------------------H
T ss_pred EecCC--------------------------------------------------------------------------H
Confidence 11000 0
Q ss_pred hhHH-HHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEE
Q 002426 177 PQVI-DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 255 (924)
Q Consensus 177 ~~~~-~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~h 255 (924)
..+. .++..+. ...+++|||+++..|+.+++.|.... | ..+|+++
T Consensus 799 ~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~---------------------p-----------~~~v~~l 844 (1151)
T 2eyq_A 799 MVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELV---------------------P-----------EARIAIG 844 (1151)
T ss_dssp HHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHC---------------------T-----------TSCEEEC
T ss_pred HHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhC---------------------C-----------CCeEEEE
Confidence 0111 1122222 34689999999999999998886320 0 1378999
Q ss_pred cCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcc-cCCHHHHHHHhcccCCCCCCCccE
Q 002426 256 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI-QLTSNELFQMAGRAGRRGIDNRGH 334 (924)
Q Consensus 256 H~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~-pls~~ey~Qm~GRAGR~G~D~~G~ 334 (924)
||+|++.+|+.++..|++|.++|||||+++++|||+|..++||. .+. +.+..+|+||+||+||.| ..|.
T Consensus 845 hg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~~~~l~~l~Qr~GRvgR~g--~~g~ 914 (1151)
T 2eyq_A 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADHFGLAQLHQLRGRVGRSH--HQAY 914 (1151)
T ss_dssp CSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTTSSCHHHHHHHHTTCCBTT--BCEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCCCCCHHHHHHHHhccCcCC--CceE
Confidence 99999999999999999999999999999999999999887775 222 457889999999999998 7899
Q ss_pred EEEEeCC
Q 002426 335 VVLVQTP 341 (924)
Q Consensus 335 vill~~~ 341 (924)
|+++..+
T Consensus 915 ~~ll~~~ 921 (1151)
T 2eyq_A 915 AWLLTPH 921 (1151)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9988765
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.77 E-value=1.6e-18 Score=209.50 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=91.2
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+|++.|+.+++.|...++ .++.+||. +|+.++.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~----------------------------------~v~~lHg~----eR~~v~~ 450 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK----------------------------------RVIQLNRK----SYDTEYP 450 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC----------------------------------CEEEECSS----SHHHHGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC----------------------------------eEEEeChH----HHHHHHH
Confidence 346899999999999999999875432 58889993 8999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecc------eecCC------CCcccCCHHHHHHHhcccCCC-CCCCccEEE
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSL------SKRTA------SGRIQLTSNELFQMAGRAGRR-GIDNRGHVV 336 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~------~k~dg------~~~~pls~~ey~Qm~GRAGR~-G~D~~G~vi 336 (924)
.|++|.++|||||+++++|||+| +++||+.- ..||. .++.|.++.+|+||+|||||. | ..|.|+
T Consensus 451 ~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g--~~G~ai 527 (673)
T 2wv9_A 451 KCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS--QIGDEY 527 (673)
T ss_dssp GGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS--CCCEEE
T ss_pred HHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC--CCCEEE
Confidence 99999999999999999999999 77777621 11232 267899999999999999998 5 689999
Q ss_pred EEe
Q 002426 337 LVQ 339 (924)
Q Consensus 337 ll~ 339 (924)
++.
T Consensus 528 ~l~ 530 (673)
T 2wv9_A 528 HYG 530 (673)
T ss_dssp EEC
T ss_pred EEE
Confidence 885
No 41
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.76 E-value=2.7e-18 Score=207.92 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=96.7
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .+.++||++++.+|..++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~~R~~~~~~ 484 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGI----------------------------------RARYLHHELDAFKRQALIRD 484 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTCCHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC----------------------------------CceeecCCCCHHHHHHHHHH
Confidence 35899999999999999999976543 57889999999999999999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEe-cceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLS-SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
|+.|.++|||||+++++|+|+|.+++||. +..++ ..|.+..+|+||+|||||.| .|.|++++++..
T Consensus 485 f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~----G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 485 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE----GFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp HHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC----SGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred hhcCCceEEEccChhhcCccCCCCCEEEEeCCccc----CCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 99999999999999999999999997776 22221 24789999999999999986 799999987643
No 42
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.76 E-value=3.3e-18 Score=178.37 Aligned_cols=112 Identities=25% Similarity=0.295 Sum_probs=100.3
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
.....++||||+|+..|+.++..|...++ ++.++||+|++.+|..+
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGH----------------------------------PAQALHGDLSQGERERV 73 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTC----------------------------------CEEEECSSSCHHHHHHH
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEEEEECCCCHHHHHHH
Confidence 34567999999999999999998864332 68899999999999999
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
+..|++|.++|||||+++++|||+|.+++||+ ++.|.++..|+||+|||||.| ..|.|++++++.+
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~--------~~~p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YRLPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 139 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE--------SSCCSSHHHHHHHHTTBCCCC----BEEEEEECGGG
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEEE--------CCCCcCHHHHHHHhcccCCCC--CCCeEEEEEchhH
Confidence 99999999999999999999999999999999 778999999999999999999 6799999997643
No 43
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.76 E-value=2.7e-18 Score=171.60 Aligned_cols=130 Identities=22% Similarity=0.277 Sum_probs=103.5
Q ss_pred hCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHH
Q 002426 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 267 (924)
Q Consensus 188 ~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~V 267 (924)
.....++||||+|+..|+.++..|...++ +++.+||+|++.+|..+
T Consensus 27 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 27 SISVTQAVIFCNTRRKVEELTTKLRNDKF----------------------------------TVSAIYSDLPQQERDTI 72 (165)
T ss_dssp HTTCSCEEEEESSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------CEEEEECCCCHHHHHHH
Confidence 34557899999999999999999875432 68999999999999999
Q ss_pred HHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCCC--H
Q 002426 268 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG--A 345 (924)
Q Consensus 268 E~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~--~ 345 (924)
+..|++|.++|||||+++++|+|+|+.++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.+. .
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--------~~~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 142 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLPANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 142 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHhcccccCC--CCceEEEEEcchHHHHH
Confidence 99999999999999999999999999999999 778899999999999999999 78999988876432 1
Q ss_pred HHHHHHHhCCCccccc
Q 002426 346 EECCKLLFAGVEPLVS 361 (924)
Q Consensus 346 ~~~~~l~~~~~~pL~S 361 (924)
..+.+.+.....++.+
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 143 RELEKFYSTQIEELPS 158 (165)
T ss_dssp HHHHHHSSCCCEECCS
T ss_pred HHHHHHHccCccccCc
Confidence 2233344444444443
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.75 E-value=4.1e-18 Score=216.31 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=59.1
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceE-EEcCCCCHHHHHHHHHH
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA-AHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa-~hH~gl~~~~R~~VE~l 270 (924)
.++||||+|+..|+.++..|...++ .++ .+|| .|.. ++.
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g~----------------------------------~~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFKF----------------------------------NVGETWSE-----FEKN-FED 349 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTTC----------------------------------CEEESSSS-----HHHH-HHH
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCC----------------------------------CeeeEecC-----cHHH-HHH
Confidence 6899999999999999999975443 455 7888 2455 999
Q ss_pred hhCCCeeEEEE----ccccccccCCCC-ceEEEe
Q 002426 271 FQRGLVKVVFA----TETLAAGINMPA-RTAVLS 299 (924)
Q Consensus 271 F~~G~ikVL~A----T~tla~GINmPa-~~VVI~ 299 (924)
|++|.++|||| |+++++|||+|+ +++||+
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~ 383 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF 383 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE
Confidence 99999999999 999999999999 888887
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.75 E-value=8.6e-19 Score=222.46 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|... ..++++||++ ..+++.
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----------------------------------~~v~~lhg~~-----~~~l~~ 314 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----------------------------------FRIGIVTATK-----KGDYEK 314 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----------------------------------SCEEECTTSS-----SHHHHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----------------------------------cCeeEEeccH-----HHHHHH
Confidence 458999999999999999988632 2688999998 377888
Q ss_pred hhCCCeeEEEE----ccccccccCCCCc-eEEEe
Q 002426 271 FQRGLVKVVFA----TETLAAGINMPAR-TAVLS 299 (924)
Q Consensus 271 F~~G~ikVL~A----T~tla~GINmPa~-~VVI~ 299 (924)
|++|.++|||| |+++++|||+|++ ++||+
T Consensus 315 F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 315 FVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp HHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred HHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 99999999999 9999999999995 87776
No 46
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=172.04 Aligned_cols=119 Identities=22% Similarity=0.246 Sum_probs=101.5
Q ss_pred HHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCH
Q 002426 182 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 261 (924)
Q Consensus 182 ~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~ 261 (924)
.+..+......++||||+++..|+.+++.|...++ .+..+||+|++
T Consensus 45 ~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~~~~ 90 (191)
T 2p6n_A 45 YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV----------------------------------EAVAIHGGKDQ 90 (191)
T ss_dssp HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC----------------------------------CEEEECTTSCH
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCH
Confidence 34444444456899999999999999999864332 67889999999
Q ss_pred HHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 262 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 262 ~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.+|..++..|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++++
T Consensus 91 ~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d~p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~ 160 (191)
T 2p6n_A 91 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YDMPEEIENYVHRIGRTGCSG--NTGIATTFINK 160 (191)
T ss_dssp HHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SSCCSSHHHHHHHHTTSCC-----CCEEEEEECT
T ss_pred HHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eCCCCCHHHHHHHhCccccCC--CCcEEEEEEcC
Confidence 99999999999999999999999999999999999999 778999999999999999999 68999988877
Q ss_pred CCC
Q 002426 342 YEG 344 (924)
Q Consensus 342 ~~~ 344 (924)
..+
T Consensus 161 ~~~ 163 (191)
T 2p6n_A 161 ACD 163 (191)
T ss_dssp TSC
T ss_pred chh
Confidence 543
No 47
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=207.28 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=84.2
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC--------CCHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG--------CLPI 262 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g--------l~~~ 262 (924)
..++||||+|++.|+.+++.|....... .....+.++||+ |++.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~----------------------------~~g~~~~~lhg~~~~~~~~~~~~~ 451 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFA----------------------------EVGVKAHHLIGAGHSSEFKPMTQN 451 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC---------------------------------CEECCCSCCCTTCCCCCHH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccc----------------------------ccCcceEEEECCCCccCCCCCCHH
Confidence 5799999999999999999997431100 011256788998 9999
Q ss_pred HHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCC
Q 002426 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 328 (924)
Q Consensus 263 ~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G 328 (924)
+|..++..|++|.++|||||+++++|||+|++++||+ ++.|.++..|+||+|||||.|
T Consensus 452 eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~--------~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 452 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR--------YGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE--------ESCCCCHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE--------eCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999998 778999999999999987765
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.74 E-value=1.6e-18 Score=211.95 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=73.6
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCccc-CCHHHHHHHhcccCCCC
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRG 328 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~p-ls~~ey~Qm~GRAGR~G 328 (924)
.+|+.+||+|++.+|+.++..|++|.++|||||+++++|||+|.+++||. ++.| .+...|+||+|||||.|
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~~l~~l~Qr~GRaGR~g 685 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERFGLAQLHQLRGRVGRGG 685 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSSCTTHHHHHHHTSCCSS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCCCHHHHHHHhcccCcCC
Confidence 37899999999999999999999999999999999999999999999887 3344 36788999999999998
Q ss_pred CCCccEEEEEeCC
Q 002426 329 IDNRGHVVLVQTP 341 (924)
Q Consensus 329 ~D~~G~vill~~~ 341 (924)
..|.|+++.++
T Consensus 686 --~~g~~ill~~~ 696 (780)
T 1gm5_A 686 --QEAYCFLVVGD 696 (780)
T ss_dssp --TTCEEECCCCS
T ss_pred --CCCEEEEEECC
Confidence 78999988874
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=7.2e-18 Score=201.29 Aligned_cols=107 Identities=22% Similarity=0.188 Sum_probs=84.6
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .+..+||+|++.+
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~----------------------------------~v~~lHG~l~q~e------- 434 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGI----------------------------------NAVAYYRGLDVSV------- 434 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTC----------------------------------CEEEECTTSCGGG-------
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCC----------------------------------cEEEecCCCCHHH-------
Confidence 45899999999999999999975443 5789999999874
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEe-ccee-----cC--CCC-----cccCCHHHHHHHhcccCCCCCCCccEEEE
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLS-SLSK-----RT--ASG-----RIQLTSNELFQMAGRAGRRGIDNRGHVVL 337 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k-----~d--g~~-----~~pls~~ey~Qm~GRAGR~G~D~~G~vil 337 (924)
|.++..+|||||+++++|||+| +++||+ +..+ || +.. ..|.+..+|+||+||||| | ..|. +.
T Consensus 435 r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~ 509 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YR 509 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EE
T ss_pred HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EE
Confidence 5667779999999999999998 776664 2121 22 111 179999999999999999 6 6898 87
Q ss_pred EeCCCC
Q 002426 338 VQTPYE 343 (924)
Q Consensus 338 l~~~~~ 343 (924)
++++.+
T Consensus 510 lvt~~e 515 (666)
T 3o8b_A 510 FVTPGE 515 (666)
T ss_dssp ESCCCC
T ss_pred EEecch
Confidence 776644
No 50
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.74 E-value=1.4e-17 Score=201.55 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=96.6
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..++||||+|++.|+.+++.|...++ .+.++||++++.+|..++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~~R~~~l~~ 490 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI----------------------------------KVNYLHSEIKTLERIEIIRD 490 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC----------------------------------CeEEEeCCCCHHHHHHHHHH
Confidence 45899999999999999999976543 56789999999999999999
Q ss_pred hhCCCeeEEEEccccccccCCCCceEEEe-cceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 271 FQRGLVKVVFATETLAAGINMPARTAVLS-SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmPa~~VVI~-~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
|+.|.++|||||+++++|+|+|.+++||. +..+| ..|.+...|+||+|||||.+ .|.|++++++..
T Consensus 491 f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~----G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 491 LRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE----GFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp HHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC----TTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred HhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc----cCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 99999999999999999999999997776 22222 23789999999999999974 899999987754
No 51
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.73 E-value=3.3e-18 Score=202.49 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||+++..|+.++..|...+.... .. .......+...+||+|++.+|..++
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~----------------~~------~~~~~g~~~~~~~~~~~~~~R~~~~ 444 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSF----------------LK------PGILTGRGRTNRATGMTLPAQKCVL 444 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTT----------------CC------EEECCC-------------------
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCc----------------ee------eeEEEecCCcccccccCHHHHHHHH
Confidence 3557999999999999999999975431000 00 0011224677889999999999999
Q ss_pred HHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 269 ELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 269 ~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
..|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||. ..|.+++++++.
T Consensus 445 ~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~--------~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 507 (555)
T 3tbk_A 445 EAFRASGDNNILIATSVADEGIDIAECNLVIL--------YEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSA 507 (555)
T ss_dssp -------CCSEEEECCCTTCCEETTSCSEEEE--------ESCCSSCCCEECSSCC-CTT---TSCEEEEEESCH
T ss_pred HHHhcCCCeeEEEEcchhhcCCccccCCEEEE--------eCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCC
Confidence 99999 99999999999999999999999999 7788999999999999 887 489999998763
No 52
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=168.59 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=86.4
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+|+..|+.++..|...++ +++.+||+|++.+|..++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGY----------------------------------ACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTC----------------------------------CEEEEC--------CHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCC----------------------------------ceEEEeCCCCHHHHHHHHH
Confidence 356899999999999999999875442 6889999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
.|++|.++|||||+++++|+|+|..++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+
T Consensus 91 ~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 91 QFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPSDIEEYVHRIGRTGRVG--NLGLATSFFNERN 154 (185)
T ss_dssp HHHHTSSSEEEEEC------CCCSBSEEEE--------SSCCSSHHHHHHHHTTBCCTT--SCEEEEEEECGGG
T ss_pred HHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHccccCCCC--CCcEEEEEEchhh
Confidence 999999999999999999999999999999 778999999999999999999 6899998887643
No 53
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=2.2e-17 Score=180.80 Aligned_cols=111 Identities=25% Similarity=0.304 Sum_probs=97.3
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||+|+..|+.++..|...++ .+..+||+|++.+|..++
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGH----------------------------------PAQALHGDMSQGERERVM 71 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTC----------------------------------CEEEECSCCCTHHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCC----------------------------------CEEEEeCCCCHHHHHHHH
Confidence 3467999999999999999999875443 688999999999999999
Q ss_pred HHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 269 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
..|++|.++|||||+++++|||+|.+++||+ ++.|.++..|+||+|||||.| ..|.|++++++.+
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d~p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e 136 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YRMPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 136 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cCCCCCHHHHHHHccCcCcCC--CCceEEEEeChHH
Confidence 9999999999999999999999999999999 778899999999999999999 6799999998754
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.71 E-value=1.6e-17 Score=195.54 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCC
Q 002426 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 259 (924)
Q Consensus 180 ~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl 259 (924)
.+.+......+..+.|||+. .+.|+.+++.|...+ ..++++||++
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~----------------------------------~~v~~~~g~~ 381 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY----------------------------------DKVYYVSGEV 381 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------------SSEEEESSST
T ss_pred HHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------------CCeEEEECCC
Confidence 34444444445556677766 888888888876432 1588999999
Q ss_pred CHHHHHHHHHHhhCCCeeEEEEc-cccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCC
Q 002426 260 LPIWKSFIEELFQRGLVKVVFAT-ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329 (924)
Q Consensus 260 ~~~~R~~VE~lF~~G~ikVL~AT-~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~ 329 (924)
++.+|+.++..|++|.++||||| +++++|+|+|..++||. .+.|.++.+|+|++|||||.|.
T Consensus 382 ~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 382 DTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKSKIIVLQTIGRVLRKHG 444 (510)
T ss_dssp THHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCSCCHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCCHHHHHHHHhcccccCC
Confidence 99999999999999999999999 99999999999999998 6677889999999999999994
No 55
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.71 E-value=3.1e-17 Score=203.57 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||+++..|+.++..|....-.. . . ........+...+||||++.+|..++
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~-------------------~-~--~~~~l~G~~~~~~hg~~~~~eR~~~l 686 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILN-------------------Y-I--KPGVLMGRGRRDQTTGMTLPSQKGVL 686 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTC-------------------S-C--CCEEC---------------------
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccc-------------------c-c--cceEEEecCCcccCCCCCHHHHHHHH
Confidence 455799999999999999999997421000 0 0 00011234667789999999999999
Q ss_pred HHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 269 ELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 269 ~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
..|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||. ..|.|++++++.
T Consensus 687 ~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~--------yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~ 749 (797)
T 4a2q_A 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (797)
T ss_dssp -------CCSEEEEECC-------CCCSEEEE--------ESCCSCHHHHHTC-----------CCCEEEEECCH
T ss_pred HHhhccCCceEEEEcCchhcCCCchhCCEEEE--------eCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCC
Confidence 99999 99999999999999999999999999 7789999999999999 998 489999888663
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.70 E-value=3.3e-17 Score=191.06 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=93.2
Q ss_pred HHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHH
Q 002426 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 265 (924)
Q Consensus 186 l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~ 265 (924)
+......++||||+++..++.+++.| ++.++||++++.+|+
T Consensus 344 l~~~~~~k~lvF~~~~~~~~~l~~~l---------------------------------------~~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 344 LERHRKDKIIIFTRHNELVYRISKVF---------------------------------------LIPAITHRTSREERE 384 (472)
T ss_dssp HHHTSSSCBCCBCSCHHHHHHHHHHT---------------------------------------TCCBCCSSSCSHHHH
T ss_pred HHhCCCCcEEEEECCHHHHHHHHHHh---------------------------------------CcceeeCCCCHHHHH
Confidence 33445679999999999999888876 245689999999999
Q ss_pred HHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC-CccEEEEEeCC
Q 002426 266 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID-NRGHVVLVQTP 341 (924)
Q Consensus 266 ~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D-~~G~vill~~~ 341 (924)
.++..|++|.++|||||++++.|+|+|+.++||. ++.|.++..|+||+|||||.|.+ ....++.+++.
T Consensus 385 ~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 385 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp THHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred HHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------ECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999999999998 56778999999999999999954 44555555544
No 57
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.70 E-value=1.2e-17 Score=204.07 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+++..|+.+++.|...+.... . ........|...+||+|++.+|..+++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~----------------~------~~~~l~G~~~~~~h~~~~~~eR~~v~~ 454 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSF----------------L------KPGILTGRGKTNQNTGMTLPAQKCILD 454 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCS----------------C------CEEC-----------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccc----------------c------ceeEEEccCCCccccCCCHHHHHHHHH
Confidence 456899999999999999999986542110 0 000111235666799999999999999
Q ss_pred HhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||. ..|.++++.++
T Consensus 455 ~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~--------~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~ 515 (696)
T 2ykg_A 455 AFKASGDHNILIATSVADEGIDIAQCNLVIL--------YEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSN 515 (696)
T ss_dssp ------CCSCSEEEESSCCC---CCCSEEEE--------ESCC--CCCC-------------CCCEEEEEESC
T ss_pred HHHhcCCccEEEEechhhcCCcCccCCEEEE--------eCCCCCHHHHHHhhcc-CcC---CCceEEEEecC
Confidence 9998 99999999999999999999999999 7788889999999999 997 47999988865
No 58
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=4.6e-18 Score=170.85 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=98.3
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+++..|+.+++.|...++ +++.+||+|++.+|..++.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI----------------------------------NNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 446899999999999999998864332 6788999999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
.|++|.++|||||+++++|+|+|+.++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 137 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFN--------FDMPRSGDTYLHRIGRTARAG--RKGTAISLVEAH 137 (170)
Confidence 999999999999999999999999999998 778899999999999999999 689998887654
No 59
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.66 E-value=1.7e-16 Score=199.50 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
....++||||.+++.|+.+++.|....-... . ........+...+||+|++.+|..++
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~--------------------i--k~~~l~G~~~~~~hg~m~~~eR~~il 686 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY--------------------I--KPGVLMGRGRRDQTTGMTLPSQKGVL 686 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSS--------------------C--CCEEC---------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccc--------------------c--ceeEEecCCCcccCCCCCHHHHHHHH
Confidence 3457999999999999999999975310000 0 00001123566789999999999999
Q ss_pred HHhhC-CCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 269 ELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 269 ~lF~~-G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
..|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||.. .|.++++.+.
T Consensus 687 ~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~--------yD~p~s~~~~iQr~GR-GR~~---~g~vi~Li~~ 748 (936)
T 4a2w_A 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRAA---GSKCILVTSK 748 (936)
T ss_dssp -------CCSEEEEECC------CCCCSEEEE--------ESCCSCSHHHHCC-----------CCCEEEEESC
T ss_pred HHhhccCCeeEEEEeCchhcCCcchhCCEEEE--------eCCCCCHHHHHHhcCC-CCCC---CCEEEEEEeC
Confidence 99999 99999999999999999999999999 7789999999999999 9984 8899988765
No 60
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.65 E-value=4e-16 Score=187.98 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=96.2
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..|+||||.|+..|+.++..|...++ ....+||++...+|.++...
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~gi----------------------------------~~~vLhg~~~~rEr~ii~~a 477 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNKGI----------------------------------PHQVLNAKNHEREAQIIEEA 477 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTTC----------------------------------CCEEECSSCHHHHHHHHTTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCCC----------------------------------CEEEeeCCccHHHHHHHHHc
Confidence 46999999999999999999986665 35679999998899888878
Q ss_pred hhCCCeeEEEEccccccccCCC--------CceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 271 FQRGLVKVVFATETLAAGINMP--------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmP--------a~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
|+.| .|+|||+.++||+|+| ...+||+ +++|-+...|+||+|||||.| ..|.++++.+..
T Consensus 478 g~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--------~d~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~e 545 (844)
T 1tf5_A 478 GQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TERHESRRIDNQLRGRSGRQG--DPGITQFYLSME 545 (844)
T ss_dssp TSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEETT
T ss_pred CCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE--------ecCCCCHHHHHhhcCccccCC--CCCeEEEEecHH
Confidence 8777 6999999999999999 7889999 889999999999999999999 899999888765
Q ss_pred CC
Q 002426 343 EG 344 (924)
Q Consensus 343 ~~ 344 (924)
++
T Consensus 546 D~ 547 (844)
T 1tf5_A 546 DE 547 (844)
T ss_dssp SS
T ss_pred HH
Confidence 43
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.62 E-value=1.7e-15 Score=181.66 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||+++..|+.+++.|...+. .+.......+..+||.++ ..|+.++.
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~--------------------------~~~~~~~~~~~~i~g~~~-~~r~~~l~ 490 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNS--------------------------DLSRKHPDYVARVTSEEG-KIGKGHLS 490 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTH--------------------------HHHTTCTTSEEECSSTTH-HHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhh--------------------------hhhccCCCeEEEEeCCCh-HHHHHHHH
Confidence 346899999999999999999864321 000001124677888864 47999999
Q ss_pred HhhCCCee---EEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC
Q 002426 270 LFQRGLVK---VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330 (924)
Q Consensus 270 lF~~G~ik---VL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D 330 (924)
.|++|..+ ||+||+++++|||+|.+++||. ++.+.++..|+||+|||||.|.|
T Consensus 491 ~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~~~~s~~~~~Q~iGR~~R~~~~ 546 (590)
T 3h1t_A 491 RFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------ARVVNSMSEFKQIVGRGTRLRED 546 (590)
T ss_dssp HHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ESCCCCHHHHHHHHTTSCCCBGG
T ss_pred HHhCCCCCCCEEEEECChhhcCccchheeEEEE--------EecCCChHHHHHHHhhhcccCcc
Confidence 99998876 8899999999999999999998 66788999999999999999854
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.60 E-value=6.5e-14 Score=176.54 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=103.5
Q ss_pred HHHhCCCCCeEEEEcChHhHHHHHHHhhh-CCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHH
Q 002426 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 263 (924)
Q Consensus 185 ~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~-~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~ 263 (924)
.+......++||||+++..++.++..|.. .++ .++.+||+|++.+
T Consensus 497 ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~----------------------------------~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 497 YLTSHRSQKVLVICAKAATALQLEQVLREREGI----------------------------------RAAVFHEGMSIIE 542 (968)
T ss_dssp HHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCC----------------------------------CEEEECTTSCTTH
T ss_pred HHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHH
Confidence 33345567999999999999999998873 232 6889999999999
Q ss_pred HHHHHHHhhCCC--eeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 264 KSFIEELFQRGL--VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 264 R~~VE~lF~~G~--ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
|+.++..|++|. ++|||||+++++|||+|..++||. ++.|.++..|.|++||+||.|......++.+...
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~--------~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM--------FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC--------SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE--------ecCCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 999999999998 999999999999999999999998 7788999999999999999995433344444444
Q ss_pred CCCHHHHHHHHhCC
Q 002426 342 YEGAEECCKLLFAG 355 (924)
Q Consensus 342 ~~~~~~~~~l~~~~ 355 (924)
....+.+.+.+...
T Consensus 615 ~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 615 KTAQSVLVRWYHEG 628 (968)
T ss_dssp TSHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhC
Confidence 33233355555433
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.59 E-value=1.3e-14 Score=174.36 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=96.5
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||||.|+..++.++..|...++ ...++||++...++.+|..
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi----------------------------------~~~vLnak~~~rEa~iia~ 485 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGI----------------------------------KHNVLNAKFHANEAAIVAQ 485 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTC----------------------------------CCEECCTTCHHHHHHHHHT
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC----------------------------------CEEEecCChhHHHHHHHHh
Confidence 456999999999999999999987665 3467899999999999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCc-------------------------------------eEEEecceecCCCCcccC
Q 002426 270 LFQRGLVKVVFATETLAAGINMPAR-------------------------------------TAVLSSLSKRTASGRIQL 312 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~-------------------------------------~VVI~~~~k~dg~~~~pl 312 (924)
.|+.| .|+|||+.++||+|++.. .+||+ +++|-
T Consensus 486 agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pe 555 (853)
T 2fsf_A 486 AGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHE 555 (853)
T ss_dssp TTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCS
T ss_pred cCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCC
Confidence 99999 799999999999999973 68999 88999
Q ss_pred CHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 313 s~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
+...|.|+.|||||.| ..|.++++.+..+
T Consensus 556 s~riy~qr~GRTGRqG--d~G~s~~fls~eD 584 (853)
T 2fsf_A 556 SRRIDNQLRGRSGRQG--DAGSSRFYLSMED 584 (853)
T ss_dssp SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred CHHHHHhhccccccCC--CCeeEEEEecccH
Confidence 9999999999999999 8999998887644
No 64
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.56 E-value=3.4e-14 Score=171.03 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=95.9
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...|+||||.|+..|+.++..|...++ ...++||++...++.+|..
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi----------------------------------~~~vLnak~~~rEa~iia~ 504 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRI----------------------------------PHNVLNAKYHEQEATIIAV 504 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTC----------------------------------CCEEECSSCHHHHHHHHHT
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCC----------------------------------CEEEecCChhHHHHHHHHh
Confidence 346999999999999999999987665 3567999998889999999
Q ss_pred HhhCCCeeEEEEccccccccCCCCc----------------------------------------------------eEE
Q 002426 270 LFQRGLVKVVFATETLAAGINMPAR----------------------------------------------------TAV 297 (924)
Q Consensus 270 lF~~G~ikVL~AT~tla~GINmPa~----------------------------------------------------~VV 297 (924)
.|+.| .|+|||+.++||+|++.. .+|
T Consensus 505 agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhV 582 (922)
T 1nkt_A 505 AGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYV 582 (922)
T ss_dssp TTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEE
T ss_pred cCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEE
Confidence 99998 699999999999999974 588
Q ss_pred EecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 298 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 298 I~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
|+ +++|-+...|.|+.|||||.| ..|.++++.+..+
T Consensus 583 I~--------te~pes~riy~qr~GRTGRqG--dpG~s~fflSleD 618 (922)
T 1nkt_A 583 LG--------TERHESRRIDNQLRGRSGRQG--DPGESRFYLSLGD 618 (922)
T ss_dssp EE--------CSCCSSHHHHHHHHHTSSGGG--CCEEEEEEEETTS
T ss_pred Ee--------ccCCCCHHHHHHHhcccccCC--CCeeEEEEechhH
Confidence 98 889999999999999999999 8999998887654
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.48 E-value=5.8e-13 Score=156.22 Aligned_cols=111 Identities=17% Similarity=-0.003 Sum_probs=90.3
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||.++..++.++..|... +...+..+||++++.+|..+..
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH---------------------------------HTCCCCEEETTSCHHHHHHHHH
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh---------------------------------hCCCeEEEECCCCHHHHHHHHH
Confidence 4468999999999998888877531 1125788999999999999999
Q ss_pred HhhCC-Cee-EEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRG-LVK-VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G-~ik-VL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|++| .++ +|+||++++.|+|+|+.++||. ++.|.++..|.|++||++|.|......++.+...
T Consensus 387 ~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~--------~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 387 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp HHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE--------SSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred HhcCCCCCCEEEEecccccCCCchhhCCEEEE--------eCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 99998 566 7999999999999999999999 7788999999999999999997766666655544
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.46 E-value=4.4e-13 Score=158.21 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
..|+||||.|+..|+.++..|...++ ....+||+....++..+...
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi----------------------------------~~~vLhgkq~~rE~~ii~~a 519 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGI----------------------------------PHQVLNAKYHEKEAEIVAKA 519 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTC----------------------------------CCEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC----------------------------------CEEEeeCCchHHHHHHHHhC
Confidence 46999999999999999999986654 35679999877788888888
Q ss_pred hhCCCeeEEEEccccccccCCC--------CceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCCC
Q 002426 271 FQRGLVKVVFATETLAAGINMP--------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 342 (924)
Q Consensus 271 F~~G~ikVL~AT~tla~GINmP--------a~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~ 342 (924)
|+.| .|+|||+.++||+|++ ...+||+ ++.|-+...|.|++|||||.| ..|.++++.+..
T Consensus 520 g~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn--------te~Pes~r~y~qriGRTGRqG--~~G~a~~fvsle 587 (822)
T 3jux_A 520 GQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG--------TERHESRRIDNQLRGRAGRQG--DPGESIFFLSLE 587 (822)
T ss_dssp HSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE--------SSCCSSHHHHHHHHTTSSCSS--CCCEEEEEEETT
T ss_pred CCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe--------cCCCCCHHHHHHhhCccccCC--CCeeEEEEechh
Confidence 8887 6999999999999998 5678999 889999999999999999999 899999888775
Q ss_pred C
Q 002426 343 E 343 (924)
Q Consensus 343 ~ 343 (924)
+
T Consensus 588 D 588 (822)
T 3jux_A 588 D 588 (822)
T ss_dssp S
T ss_pred H
Confidence 5
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.26 E-value=5.3e-11 Score=149.49 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=68.5
Q ss_pred HHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCC--CccEEEEEeC
Q 002426 263 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID--NRGHVVLVQT 340 (924)
Q Consensus 263 ~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D--~~G~vill~~ 340 (924)
.|..+...|++|.++|||+|+.+++|+|.|..+|++- +.|++...|+|++||+||.+.+ +.|.+|.+.+
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tlyl---------Dkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFV---------DKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEEE---------ESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEEE---------ccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 5888999999999999999999999999999977654 4788999999999999999853 4588887776
Q ss_pred CCCCHHHHHHHHhCC
Q 002426 341 PYEGAEECCKLLFAG 355 (924)
Q Consensus 341 ~~~~~~~~~~l~~~~ 355 (924)
.......+.+.+.+.
T Consensus 708 ~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 708 LERSTIDAITLFGDK 722 (1038)
T ss_dssp CHHHHHHHHHHTSCS
T ss_pred cHHHHHHHHHHHhCC
Confidence 655555555555444
No 68
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.22 E-value=3.4e-11 Score=129.91 Aligned_cols=119 Identities=16% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhC-CCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 180 ~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~-~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
.+++..+.. ...++||||.++..++.+...|... ++ .+..+||+
T Consensus 102 ~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~----------------------------------~~~~l~G~ 146 (271)
T 1z5z_A 102 MEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNT----------------------------------EVPFLYGE 146 (271)
T ss_dssp HHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCS----------------------------------CCCEECTT
T ss_pred HHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCC----------------------------------cEEEEECC
Confidence 344444433 3468999999999999988888631 22 46789999
Q ss_pred CCHHHHHHHHHHhhCC-Cee-EEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEE
Q 002426 259 CLPIWKSFIEELFQRG-LVK-VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 336 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G-~ik-VL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vi 336 (924)
+++.+|..+...|++| .++ +|++|+.+++|+|+|+.++||. ++.|.++..|.|++||++|.|....-.++
T Consensus 147 ~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~--------~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 147 LSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp SCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--------CSCCSCTTTC--------------CCEEE
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE--------ECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999 788 7999999999999999999999 78899999999999999999965555556
Q ss_pred EEeCC
Q 002426 337 LVQTP 341 (924)
Q Consensus 337 ll~~~ 341 (924)
.+...
T Consensus 219 ~li~~ 223 (271)
T 1z5z_A 219 KLISV 223 (271)
T ss_dssp EEEET
T ss_pred EEeeC
Confidence 55543
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3e-10 Score=140.84 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=95.5
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
...++||||..+..++.+...|...++ .+..+||++++.+|..+..
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~----------------------------------~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGI----------------------------------NFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTC----------------------------------CCEEESTTSCHHHHHHHHH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCC----------------------------------CEEEEeCCCCHHHHHHHHH
Confidence 446999999999999998888864332 5678999999999999999
Q ss_pred HhhCCCe---eEEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 270 LFQRGLV---KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 270 lF~~G~i---kVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.|+.|.. .+|++|.+++.|||+|+.++||. ++.+-++..+.|++|||+|.|......++.+...
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~--------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~ 683 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI--------FDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE--------SSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEET
T ss_pred HhhCCCCCceEEEEecccccCCCCccccceEEE--------ecCCCChhhHHHHHHHHHhcCCCceEEEEEEecC
Confidence 9999655 49999999999999999999999 7788899999999999999998777777755554
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.96 E-value=5.2e-09 Score=126.56 Aligned_cols=117 Identities=10% Similarity=-0.008 Sum_probs=97.8
Q ss_pred HHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHH
Q 002426 183 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 262 (924)
Q Consensus 183 l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~ 262 (924)
+..+......++|||+.++..++.++..|...++ .+..+||++++.
T Consensus 408 l~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~----------------------------------~~~~l~G~~~~~ 453 (644)
T 1z3i_X 408 LAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRY----------------------------------LYVRLDGTMSIK 453 (644)
T ss_dssp HHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTC----------------------------------CEEEECSSCCHH
T ss_pred HHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCC----------------------------------CEEEEeCCCCHH
Confidence 3333334456899999999999988888764332 567899999999
Q ss_pred HHHHHHHHhhCCCee---EEEEccccccccCCCCceEEEecceecCCCCcccCCHHHHHHHhcccCCCCCCCccEEEEEe
Q 002426 263 WKSFIEELFQRGLVK---VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 339 (924)
Q Consensus 263 ~R~~VE~lF~~G~ik---VL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pls~~ey~Qm~GRAGR~G~D~~G~vill~ 339 (924)
.|..+...|++|... +|++|..++.|||+|+.++||. ++.|-++..|.|++||++|.|......++-+.
T Consensus 454 ~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~--------~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 454 KRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM--------FDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp HHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE--------CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred HHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE--------ECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 999999999998764 8999999999999999999999 78899999999999999999976666666555
Q ss_pred CC
Q 002426 340 TP 341 (924)
Q Consensus 340 ~~ 341 (924)
..
T Consensus 526 ~~ 527 (644)
T 1z3i_X 526 ST 527 (644)
T ss_dssp ET
T ss_pred EC
Confidence 44
No 71
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.94 E-value=4.7e-06 Score=86.13 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=52.3
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhccc-CCceEEecCC
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSS 87 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~-~~~~~vv~s~ 87 (924)
...+.++++||+||+|.+.+.+++..++.++..++++.|+++||||+++ ++.+|+... ++|..+....
T Consensus 145 ~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 145 ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE--KLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEEEECC-
T ss_pred CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCH--HHHHHHHHHcCCCeEEEeec
Confidence 3457899999999999999889999999999999999999999999985 344444332 3455554443
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.92 E-value=7.4e-06 Score=86.17 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=49.8
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHh
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 74 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL 74 (924)
...++++++||+||+|.|.+.+++..++.++..++++.|+++||||+++ .++++.+.
T Consensus 171 ~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 171 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999996 45555544
No 73
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=83.76 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=48.6
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHH
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGW 73 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~w 73 (924)
...++++++||+||+|.+.+.+++..++.++..++++.|+++||||+++ .++++..
T Consensus 162 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 162 SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence 4458899999999999999999999999999999999999999999995 3555543
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.86 E-value=1.7e-05 Score=80.82 Aligned_cols=49 Identities=35% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 66 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N 66 (924)
...+.++++||+||+|.+.+.+++..++.++..++++.|+++||||+|+
T Consensus 141 ~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 141 VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 3457899999999999999999999999999999989999999999984
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.83 E-value=1e-05 Score=82.40 Aligned_cols=57 Identities=28% Similarity=0.265 Sum_probs=50.1
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhc
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIG 75 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~ 75 (924)
..+.++++||+||+|.+.+.+++..++.++..+++..|+++||||+++ .++++++..
T Consensus 140 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred cchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 457899999999999999889999999999999999999999999996 467777654
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.80 E-value=1.5e-05 Score=83.29 Aligned_cols=56 Identities=27% Similarity=0.324 Sum_probs=49.0
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHh
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 74 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL 74 (924)
-.+.++++||+||+|.+.+.+++..++.++..++...|+++||||+++ .++++.+.
T Consensus 167 ~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 167 FHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp CCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred cccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 457899999999999999989999999999999999999999999985 46666654
No 77
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.77 E-value=1.5e-05 Score=84.97 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=48.7
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHH
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGW 73 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~w 73 (924)
-.+.++++||+||+|.|.+.+++..++.++..++..+|+|+||||+++ .++++..
T Consensus 197 ~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 197 FMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred cccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999996 4556553
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.75 E-value=3e-05 Score=80.77 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCCCCccEEEEccccccCCCC-chHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcc
Q 002426 19 SGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~-RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~ 76 (924)
-.+.++++||+||+|.+.+.+ ++..++.++..++...|+++||||++ .++.+|+..
T Consensus 162 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~--~~~~~~~~~ 218 (230)
T 2oxc_A 162 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP--EFLANALTK 218 (230)
T ss_dssp SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC--HHHHHHHTT
T ss_pred cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC--HHHHHHHHH
Confidence 357899999999999998876 89999999999999999999999998 556666654
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.73 E-value=2.3e-05 Score=83.00 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=49.0
Q ss_pred CCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhc
Q 002426 20 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIG 75 (924)
Q Consensus 20 ~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~ 75 (924)
.+.++++||+||+|.+.+.+++..++.++..+++..|+++||||+++ ..+++.+..
T Consensus 183 ~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 183 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp CCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC
T ss_pred CccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC
Confidence 47899999999999999889999999999999999999999999995 456666543
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.71 E-value=2.8e-05 Score=81.45 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=47.9
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHh
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 74 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL 74 (924)
..+.++++||+||+|.+.+.+++..+..++..++...|+|+||||+++ ..+++..+
T Consensus 169 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 169 LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred cCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH
Confidence 457889999999999999888999999999999999999999999985 45555443
No 81
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.66 E-value=1.9e-05 Score=86.19 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=48.5
Q ss_pred CCCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHhc
Q 002426 19 SGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIG 75 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL~ 75 (924)
-.++++++|||||+|.|.+ .+++..+..++..+++++|+|+||||+++ ...++..+.
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 3478999999999999987 67888888888889999999999999997 466666553
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.65 E-value=3.7e-05 Score=79.44 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=48.2
Q ss_pred CCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHH
Q 002426 18 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGW 73 (924)
Q Consensus 18 ~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~w 73 (924)
...+.++++||+||+|.+.+.+++..+..++..+++..|+++||||+++ ..++...
T Consensus 150 ~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 150 RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHH
T ss_pred CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHH
Confidence 3457889999999999999889999999999999999999999999996 3455543
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.61 E-value=3.1e-05 Score=81.77 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHh--CCC--CccEEEEcccCCC-HHHHHHHh
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPK--EVQIICLSATVAN-ADELAGWI 74 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~--lp~--~~qiV~LSATi~N-~~e~a~wL 74 (924)
..+.++++||+||+|.|.+.+++..++.++.. ++. +.|+++||||+++ .++++..+
T Consensus 170 ~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 170 ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 35789999999999999998999999999885 454 7899999999986 45566544
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.48 E-value=4.7e-05 Score=78.46 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCCCCccEEEEccccccCC-CCchHHHHHHHHhCCCCccEEEEcccCCC-HHHHHHHh
Q 002426 19 SGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 74 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D-~~RG~v~Eeii~~lp~~~qiV~LSATi~N-~~e~a~wL 74 (924)
..++++++||+||+|.+.+ .++...+..++..++.+.|+++||||+++ .++++.+.
T Consensus 154 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 154 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 4578999999999999976 45667777788888889999999999997 46676644
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.41 E-value=8.6e-05 Score=77.91 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=41.8
Q ss_pred CCCCCccEEEEccccccCCC---CchHHHHHHHHhC-CCCccEEEEcccCCCHHHHHHHhcc
Q 002426 19 SGLFDVDVIVLDEVHYLSDI---SRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQ 76 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~---~RG~v~Eeii~~l-p~~~qiV~LSATi~N~~e~a~wL~~ 76 (924)
-.+.++++||+||+|.|.+. ++...+..++..+ +.+.|+++||||++ .++.+|+..
T Consensus 171 ~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~--~~v~~~~~~ 230 (245)
T 3dkp_A 171 IDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA--YDVEQWCKL 230 (245)
T ss_dssp CCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC--HHHHHHHHH
T ss_pred cccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC--HHHHHHHHH
Confidence 35789999999999999873 4445555555554 56799999999998 456666654
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=8e-05 Score=77.94 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCCccEEEEcccccc-CCCCch-HHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcc
Q 002426 21 LFDVDVIVLDEVHYL-SDISRG-TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76 (924)
Q Consensus 21 L~~v~~VVlDE~H~l-~D~~RG-~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~ 76 (924)
++++++||+||+|.+ .+.++. ..+..++... ++.|+|+||||+++.. |++|++.
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH-HHHHcCC
Confidence 889999999999985 443333 2445555555 4799999999999766 9999974
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.02 E-value=0.0029 Score=75.81 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCC
Q 002426 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 258 (924)
Q Consensus 179 ~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~g 258 (924)
+.+.+..+.....+.++||++|....+.+++.+. .+ +.- ..-|
T Consensus 436 ~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~----------------------------------~~~-~~q~ 478 (620)
T 4a15_A 436 MATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FE----------------------------------HMK-EYRG 478 (620)
T ss_dssp HHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SC----------------------------------CEE-CCTT
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hc----------------------------------chh-ccCC
Confidence 3444555554445679999999998887776654 11 000 2234
Q ss_pred CCHHHHHHHHHHhhCCCeeEEEEcc--ccccccCCCC---ceEEEecceec----------------CCC-----CcccC
Q 002426 259 CLPIWKSFIEELFQRGLVKVVFATE--TLAAGINMPA---RTAVLSSLSKR----------------TAS-----GRIQL 312 (924)
Q Consensus 259 l~~~~R~~VE~lF~~G~ikVL~AT~--tla~GINmPa---~~VVI~~~~k~----------------dg~-----~~~pl 312 (924)
+....+..+.+.|+ |.-.|||||- .++.|||+|. +.|||.++-.- .|+ +..|
T Consensus 479 ~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p- 556 (620)
T 4a15_A 479 IDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP- 556 (620)
T ss_dssp CCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-
T ss_pred CChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-
Confidence 55567888999999 8888999975 9999999996 55777764211 011 1122
Q ss_pred CHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 313 TSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 313 s~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
....+.|-+||+=|.-. ..|.++++...
T Consensus 557 a~~~l~Qa~GRlIR~~~-D~G~v~llD~R 584 (620)
T 4a15_A 557 TAIKIRQEIGRLIRSAE-DTGACVILDKR 584 (620)
T ss_dssp HHHHHHHHHHTTCCSTT-CCEEEEEECGG
T ss_pred HHHHHHHHhCccccCCC-ceEEEEEEccc
Confidence 34557899999998764 58887777554
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.0011 Score=78.10 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEc
Q 002426 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256 (924)
Q Consensus 177 ~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH 256 (924)
..+.+.+..+.......++||++|.+..+.+++.+... .+ +.+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~~------------------------------------~~-~~q 412 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGI------------------------------------PV-IEE 412 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTTS------------------------------------CE-EES
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhccC------------------------------------ce-Eec
Confidence 34566666666666668999999999998888766421 22 233
Q ss_pred CCCCHHHHHHHHHHhhCCCeeEEE--EccccccccCCCC----ce-EEEecceecCC-----------------C----C
Q 002426 257 AGCLPIWKSFIEELFQRGLVKVVF--ATETLAAGINMPA----RT-AVLSSLSKRTA-----------------S----G 308 (924)
Q Consensus 257 ~gl~~~~R~~VE~lF~~G~ikVL~--AT~tla~GINmPa----~~-VVI~~~~k~dg-----------------~----~ 308 (924)
+.. ..|+.+++.|++|. .||| ||..++.|||+|. .+ |||.++-.-.. + +
T Consensus 413 ~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~ 489 (540)
T 2vl7_A 413 NKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI 489 (540)
T ss_dssp TTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH
Confidence 332 45788899998865 5777 8999999999997 34 55554321111 0 0
Q ss_pred cccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 309 ~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
..+.....+.|-+||+-|... ..|.++++...
T Consensus 490 ~~~~~~~~~~Q~~GR~iR~~~-D~g~v~llD~R 521 (540)
T 2vl7_A 490 IHDLTAIVIKQTIGRAFRDPN-DYVKIYLCDSR 521 (540)
T ss_dssp HHHHHHHHHHHHHHHHCCSTT-CCCEEEEESGG
T ss_pred HHHHHHHHHHHHhCCcccCCC-ccEEEEEEccc
Confidence 122224668899999999864 48877766544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.56 E-value=0.0008 Score=72.22 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCH
Q 002426 19 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 67 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~ 67 (924)
..++++++||+||+|.+. +..++.++..++...++++||||.+|.
T Consensus 221 ~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp GGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCTT
T ss_pred HHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeCCCCCc
Confidence 357899999999999997 357888888887789999999999975
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.18 E-value=0.025 Score=66.68 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcC
Q 002426 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 257 (924)
Q Consensus 178 ~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~ 257 (924)
.+.+.+..+.....+.++||++|.+..+.+++.+ + ..|-....
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~---~----------------------------------~~v~~q~~ 422 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI---S----------------------------------LPKYVESE 422 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTTC---C----------------------------------SSEEECCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHhc---C----------------------------------CcEEEcCC
Confidence 4455566666555568999999998887766421 0 12323333
Q ss_pred CCCHHHHHHHHHHhhCCCeeEEEEc--cccccccCCC------CceEEEeccee-------------cC---CC-C----
Q 002426 258 GCLPIWKSFIEELFQRGLVKVVFAT--ETLAAGINMP------ARTAVLSSLSK-------------RT---AS-G---- 308 (924)
Q Consensus 258 gl~~~~R~~VE~lF~~G~ikVL~AT--~tla~GINmP------a~~VVI~~~~k-------------~d---g~-~---- 308 (924)
+++ +..+.+.|+.+.--||||| ..+..|||+| .+.|||.++-. ++ |. .
T Consensus 423 ~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~ 499 (551)
T 3crv_A 423 DSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFL 499 (551)
T ss_dssp SCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHH
T ss_pred CCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHH
Confidence 444 3456777753333799998 6999999999 46688876311 11 11 1
Q ss_pred -cccCCHHHHHHHhcccCCCCCCCccEEEEEeCCCC
Q 002426 309 -RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343 (924)
Q Consensus 309 -~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~~~ 343 (924)
..| ....+.|-+||+=|... ..|.++++.....
T Consensus 500 y~~p-a~~~l~Qa~GRlIR~~~-D~G~v~llD~R~~ 533 (551)
T 3crv_A 500 FKIP-ALVTIKQAIGRAIRDVN-DKCNVWLLDKRFE 533 (551)
T ss_dssp THHH-HHHHHHHHHHTTCCSTT-CEEEEEEESGGGG
T ss_pred HHHH-HHHHHHHHhccCccCCC-ccEEEEEeehhcc
Confidence 223 45668899999998764 4887777765543
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.90 E-value=0.0039 Score=63.22 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=26.3
Q ss_pred CCCCCccEEEEccccccCCCC-chHHHHHHHHhC-------------CCCccEEEEccc
Q 002426 19 SGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIYC-------------PKEVQIICLSAT 63 (924)
Q Consensus 19 ~~L~~v~~VVlDE~H~l~D~~-RG~v~Eeii~~l-------------p~~~qiV~LSAT 63 (924)
..+.++++||+||+|.+.+.. ....+...+... .+.+++|+||||
T Consensus 158 ~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 457899999999999997643 333333333221 157899999998
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.74 E-value=0.023 Score=59.30 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHH
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANAD 68 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~ 68 (924)
..+++||+||+|++.+.. ++.++..++ ..++++||||.++.+
T Consensus 191 ~~~~llIiDEaH~l~~~~----~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 191 NRFMLLIFDEVHHLPAES----YVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp TTCSEEEEECSSCCCTTT----HHHHHHTCC-CSEEEEEEESCC---
T ss_pred ccCCEEEEECCccCCChH----HHHHHHhcc-CCEEEEEecCCCCCC
Confidence 468999999999998754 455555665 578999999998654
No 93
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=92.52 E-value=0.69 Score=56.54 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=24.9
Q ss_pred cccCCHHHHHHHhcccCCCCCCCccEEEEEeCC
Q 002426 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341 (924)
Q Consensus 309 ~~pls~~ey~Qm~GRAGR~G~D~~G~vill~~~ 341 (924)
.++-|..-=.|.-|||||-| ..|.+-++.+-
T Consensus 667 eRhESrRIDnQLRGRaGRQG--DPGsSrF~LSL 697 (997)
T 2ipc_A 667 ERHESRRIDNQLRGRAGRQG--DPGGSRFYVSF 697 (997)
T ss_dssp SCCSSHHHHHHHHHTSSCSS--CCCEEEEEEES
T ss_pred cCCchHHHHHHHhcccccCC--CCCCeEEEEEC
Confidence 45677778899999999999 78888766654
No 94
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=89.15 E-value=0.41 Score=57.99 Aligned_cols=168 Identities=12% Similarity=0.023 Sum_probs=98.3
Q ss_pred HHHHHHHHhHcCcccCCC--CccChhhHHHHhhhCCchHHHHHHHHhcccC--CCCHHhHHHHHhhhh-cccccccccCC
Q 002426 734 FLRISNVIHETRALDINT--QVIFPLGETAAAIRGENELWLAMVLRNKILL--DLKPAQLAAVCASLV-SEGIKVRLWKN 808 (924)
Q Consensus 734 f~~~~~VL~~lgyld~~~--~~vt~kGr~a~~I~~~~ELlltell~~g~~~--~L~p~~lAAllS~~v-~e~~~~r~~~~ 808 (924)
+.+.++.|.++|+|+.++ ..+|..|+.++..+-.- -++.++..+.=. ..+..++..++|+.- ++..
T Consensus 473 ~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~------- 543 (715)
T 2va8_A 473 FDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINP--FTADIIRKGLEGHKASCELAYLHLLAFTPDGPLV------- 543 (715)
T ss_dssp HHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCH--HHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCC-------
T ss_pred HHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCH--hHHHHHHHHhhhccCCCHHHHHHHhhcCcccccC-------
Confidence 667888999999998653 37999999999998643 334444443322 245556666555422 2221
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCC--------CCchHHHHHHHHhCCCCHHHHHHhcCCChhhH
Q 002426 809 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EIPCC--------LDSQFSGMVEAWASGLTWREMMMDCALDDGDL 879 (924)
Q Consensus 809 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l-~~~~~--------~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdi 879 (924)
...+ .+.. .+.+...+. ...++ +.|.. ......-+..+|.++.++.+|++.-++..||+
T Consensus 544 ---~~r~-~e~~----~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl 611 (715)
T 2va8_A 544 ---SVGR-NEEE----ELIELLEDL----DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDL 611 (715)
T ss_dssp ---CCCH-HHHH----HHHHHHTTC----SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred ---ccCh-HHHH----HHHHHHHhc----chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhH
Confidence 1111 1111 111111000 01111 11110 11124556799999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCccccC
Q 002426 880 ARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 922 (924)
Q Consensus 880 vR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~~ 922 (924)
........-+++.+...+.. ...+...+..-...|..|+..|+
T Consensus 612 ~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~ 656 (715)
T 2va8_A 612 RNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEEL 656 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhh
Confidence 88877666666655443322 45666667777777776766654
No 95
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=83.70 E-value=6.9 Score=47.07 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHhHcCcccCC-CCccChhhHHHHhhhCCchHHHHHHHHhcccCC-CCHHhHHHHHhhhh-ccccccccc
Q 002426 730 GWKEFLRISNVIHETRALDIN-TQVIFPLGETAAAIRGENELWLAMVLRNKILLD-LKPAQLAAVCASLV-SEGIKVRLW 806 (924)
Q Consensus 730 ~~~~f~~~~~VL~~lgyld~~-~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~-L~p~~lAAllS~~v-~e~~~~r~~ 806 (924)
....+.+.++.|.++|+|+.+ ...+|..|+.++..+-. --.+.++..+.=.. .+..++-.++|+.- |+.
T Consensus 451 ~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~------ 522 (702)
T 2p6r_A 451 LSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYID--PLTGFIFHDVLSRMELSDIGALHLICRTPDMER------ 522 (702)
T ss_dssp CHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCC--HHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCC------
T ss_pred HHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCC--HHHHHHHHHHhhcccCCHHHHHHHhhCCccccc------
Confidence 455677888999999999864 13799999999998863 34456666654332 45556555554321 122
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCC--C-------CCchHHHHHHHHhCCCCHHHHHHhcCCCh
Q 002426 807 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG-VEIPC--C-------LDSQFSGMVEAWASGLTWREMMMDCALDD 876 (924)
Q Consensus 807 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-l~~~~--~-------~~~~l~~~v~~Wa~G~~f~~i~~~t~l~e 876 (924)
....+.+ ....+.+.+ . .++ +++|. . ......-++.+|.+|.++.+|++.-.+..
T Consensus 523 ----i~~r~~e--~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~ 587 (702)
T 2p6r_A 523 ----LTVRKTD--SWVEEEAFR-------L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAP 587 (702)
T ss_dssp ----CCCCTTT--HHHHHHHHH-------H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCH
T ss_pred ----CCCCCch--HHHHHHHHh-------c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcH
Confidence 1222222 111111111 0 122 23331 1 11225566799999999999999989999
Q ss_pred hhHHHHHHHHHHHHh
Q 002426 877 GDLARLLRRTIDLLA 891 (924)
Q Consensus 877 GdivR~~rRl~elL~ 891 (924)
||+...+....-+++
T Consensus 588 gdl~~i~~~a~~l~~ 602 (702)
T 2p6r_A 588 GDLRRIVETAEWLSN 602 (702)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 998765554443333
No 96
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.45 E-value=8.1 Score=46.57 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhHcCccc-CCC--CccChhhHHHHhhhCCchHHHHHHHHhcccC---CCCHHhHHHHHhhhh-cccccc
Q 002426 731 WKEFLRISNVIHETRALD-INT--QVIFPLGETAAAIRGENELWLAMVLRNKILL---DLKPAQLAAVCASLV-SEGIKV 803 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld-~~~--~~vt~kGr~a~~I~~~~ELlltell~~g~~~---~L~p~~lAAllS~~v-~e~~~~ 803 (924)
...+...++.|.++|+|+ .++ ..+|..|+.+++.+-.-. .+.++....=. ..+..++-.++|..- ++.
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~--- 527 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPY--TAKMFKDKMEEVVKDPNPIGIFHLISLTPDITP--- 527 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHH--HHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCC---
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHH--HHHHHHHHHHhhccCCCHHHHHHHhccCccccc---
Confidence 345668888999999998 542 279999999999986433 33343332211 144556666655421 122
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C----------chHHHHHHHHhCCCCHHHHHHh
Q 002426 804 RLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL--D----------SQFSGMVEAWASGLTWREMMMD 871 (924)
Q Consensus 804 r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~~--~----------~~l~~~v~~Wa~G~~f~~i~~~ 871 (924)
....+ .+.. . +.++ +.+...+.-.+.|... . .-..-++++|.++.++.+|++.
T Consensus 528 -------i~~r~-~e~~-~---l~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~ 592 (720)
T 2zj8_A 528 -------FNYSK-REFE-R---LEEE---YYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEK 592 (720)
T ss_dssp -------CCCCH-HHHH-H---HHHH---HHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred -------cccCH-HHHH-H---HHHH---HHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 11111 1111 1 1111 1111111112333221 1 1245567999999999999998
Q ss_pred cCCChhhHHHHHHHHHHHHhhc
Q 002426 872 CALDDGDLARLLRRTIDLLAQI 893 (924)
Q Consensus 872 t~l~eGdivR~~rRl~elL~Ql 893 (924)
-.+..||+...+....-+++-+
T Consensus 593 ~~~~~gdl~~~~~~a~~l~~a~ 614 (720)
T 2zj8_A 593 YSVEPGDIYRIVETAEWLVYSL 614 (720)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHhHHHHHHHHHHHHHHH
Confidence 8999999887666555544443
No 97
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=66.68 E-value=15 Score=38.67 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhc-ccCCCCHHhHHHHHhhhhccc
Q 002426 736 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK-ILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 736 ~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g-~~~~L~p~~lAAllS~~v~e~ 800 (924)
+=.+.|..||.||+++ .+|..|+..+++-- |--++-+|..+ .|.-+ ++++.++|++-.++
T Consensus 22 ~A~~~L~~LgAld~~g-~lT~lG~~ma~lPl--~P~lakmLl~a~~~~c~--~~~l~iaA~Ls~~~ 82 (270)
T 3i4u_A 22 TAMEQLYTLGALDDEG-LLTRLGRRMAEFPL--EPMLCKMLIMSVHLGCS--EEMLTIVSMLSVQN 82 (270)
T ss_dssp HHHHHHHHHTSBCTTS-CBCHHHHHHTTSCS--CHHHHHHHHHHHHTTCH--HHHHHHHHHHTSSC
T ss_pred HHHHHHHHcCCcCCCC-CccHHHHHHHhCCC--CHHHHHHHHHhhhcCCH--HHHHHHHHHHCCCc
Confidence 4456899999999885 89999999999875 44555555444 44433 34444445444343
No 98
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=62.52 E-value=5.1 Score=47.77 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=27.7
Q ss_pred CCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccC
Q 002426 22 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 64 (924)
Q Consensus 22 ~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi 64 (924)
...++||+||+|.+.+.. ......+..++. .+.++||||.
T Consensus 191 ~~~~~vI~DEaH~ikn~~--~~~~~al~~l~~-~~rl~LTgTP 230 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD--NQTYLALNSMNA-QRRVLISGTP 230 (644)
T ss_dssp SCCCEEEETTGGGCCTTC--HHHHHHHHHHCC-SEEEEECSSC
T ss_pred CCccEEEEECceecCChh--hHHHHHHHhccc-CcEEEEecCc
Confidence 356889999999997533 333344445543 4779999995
No 99
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=61.72 E-value=16 Score=44.57 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=40.5
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccc-cccCCCCceEEEe
Q 002426 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA-AGINMPARTAVLS 299 (924)
Q Consensus 250 ~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla-~GINmPa~~VVI~ 299 (924)
-.|+..||++....|..+...+.+|..+|+|+|..+- ..+++....+||-
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 3688999999999999999999999999999997543 3467777665554
No 100
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=54.91 E-value=7.4 Score=36.67 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred CCCCCchHHHHHHHH-hCCCCHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCCC
Q 002426 845 PCCLDSQFSGMVEAW-ASGLTWREMMMDCAL-DDGDLARLLRRTIDLLAQIPKLP 897 (924)
Q Consensus 845 ~~~~~~~l~~~v~~W-a~G~~f~~i~~~t~l-~eGdivR~~rRl~elL~Ql~~~~ 897 (924)
|..+.+.+++-+..+ +.|.|+.+||+..++ ..-.|-||+.+=.|+..++..|-
T Consensus 10 Ptk~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar 64 (140)
T 4dyq_A 10 PSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKAT 64 (140)
T ss_dssp CCSCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHH
Confidence 445888899888777 899999999999999 89999999999888877776653
No 101
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=53.62 E-value=23 Score=39.08 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=51.7
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 269 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~ 269 (924)
....+||.++++.-|.+.++.+.... . ..-.++..|||.+...|.....
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~------------------------------~-~~~~v~~~~g~~~~~~~~~~~~ 111 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLA------------------------------D-EKVKIFGFYSSMKKEEKEKFEK 111 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHC------------------------------C-SSCCEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHc------------------------------c-CCceEEEEECCCChhhHHHHHH
Confidence 44689999999999988888776311 1 1226889999999998888888
Q ss_pred HhhCCCeeEEEEcccc
Q 002426 270 LFQRGLVKVVFATETL 285 (924)
Q Consensus 270 lF~~G~ikVL~AT~tl 285 (924)
.+..|..+|+|+|+-.
T Consensus 112 ~l~~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 112 SFEEDDYHILVFSTQF 127 (414)
T ss_dssp HHHHTCCSEEEEEHHH
T ss_pred HhhcCCCCEEEECHHH
Confidence 8889999999999853
No 102
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=51.46 E-value=11 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.3
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHhh
Q 002426 867 EMMMDCALDDGDLARLLRRTIDLLAQ 892 (924)
Q Consensus 867 ~i~~~t~l~eGdivR~~rRl~elL~Q 892 (924)
++|..-.+.||||||.+|.++...++
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 56777789999999999999876554
No 103
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=47.79 E-value=58 Score=30.46 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhHcCcccC----CC-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 730 GWKEFLRISNVIHETRALDI----NT-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 730 ~~~~f~~~~~VL~~lgyld~----~~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
-...-.++++-|.+-|||.. ++ ..+|.+|+-+.+-- .-...-+...+|.+|+++|++.+...+
T Consensus 59 ~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 59 EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV----DGVISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34555688999999999952 21 26899999776432 112334556688999999998887764
No 104
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=40.09 E-value=50 Score=42.04 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=40.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEcc-ccccccCCCCceEEEe
Q 002426 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE-TLAAGINMPARTAVLS 299 (924)
Q Consensus 251 GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~-tla~GINmPa~~VVI~ 299 (924)
.|+..|+......+..+...+..|..+|+|+|. .+...+++....+||-
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 578899999999999999999999999999995 4455577777775554
No 105
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=38.88 E-value=59 Score=27.45 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=40.9
Q ss_pred CCchH-HHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCC
Q 002426 848 LDSQF-SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 898 (924)
Q Consensus 848 ~~~~l-~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~ 898 (924)
+.+.+ ..+|..+..|.|..+|++..++....|-||+++......+....+.
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~~~ 74 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSAT 74 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCCCc
Confidence 45555 4566666789999999999999999999999998887777666553
No 106
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.34 E-value=28 Score=25.02 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHH
Q 002426 853 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886 (924)
Q Consensus 853 ~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl 886 (924)
..++..|..|.|..+|.+..++....|-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4667778999999999999999999999998753
No 107
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=38.06 E-value=69 Score=29.46 Aligned_cols=63 Identities=5% Similarity=-0.053 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhHcCcccCCC---------CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhh
Q 002426 731 WKEFLRISNVIHETRALDINT---------QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~~---------~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v 797 (924)
...-.++++-|.+.|||.... ..+|.+|+.+.+-.. =...-+...++++|+++++..+...+-
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L~ 139 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK----ARVDAAHGRYFEGIPDTVVNQMRDTLQ 139 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345567888999999996421 369999998876442 123344566778999999988877654
No 108
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=37.86 E-value=24 Score=41.65 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=28.3
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEc
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LS 61 (924)
.+++||+||++++. ...++.++..+|...|+|++.
T Consensus 262 ~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 262 HLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp SCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEE
T ss_pred CCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEc
Confidence 78999999999653 356677888888889998864
No 109
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=37.13 E-value=48 Score=42.05 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=52.5
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHH
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 268 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE 268 (924)
.....+||.++++.-|.+.++.+..... ..-.++..|||++..+|....
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~-------------------------------~~i~v~~l~Gg~~~~er~~~~ 167 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLAD-------------------------------EKVKIFGFYSSMKKEEKEKFE 167 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSC-------------------------------TTSCEEEECTTCCTTHHHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhC-------------------------------CCCeEEEEeCCCCHHHHHHHH
Confidence 3445899999999999998888864220 112588999999998888888
Q ss_pred HHhhCCCeeEEEEccc
Q 002426 269 ELFQRGLVKVVFATET 284 (924)
Q Consensus 269 ~lF~~G~ikVL~AT~t 284 (924)
..+.+|..+|+|+|+-
T Consensus 168 ~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 168 KSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp HHHHTSCCSEEEEEHH
T ss_pred HHHhCCCCCEEEECHH
Confidence 9999999999999974
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=36.60 E-value=69 Score=30.31 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... + ..+|.+|+.+..-.. -...-+...+|.+|+++++..+...+
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME----EVIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455888999999999642 1 268999998876442 12333555677889999988877765
No 111
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=36.56 E-value=70 Score=29.08 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHcCcccCC-----C----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN-----T----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~-----~----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+-|||... . ..+|.+|+.+.+-.. -...-+...++.+|++++++.+...+
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44556888999999999631 1 268999998876432 12334456678899999998887754
No 112
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.87 E-value=61 Score=30.33 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=46.5
Q ss_pred hccccHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 726 IEPSGWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 726 ~~~~~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
..+.-...-.++++-|.+.|||... + ..+|.+|+.+++-.. -...-+...++.++++++++.+...+
T Consensus 76 ~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 76 LGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS----PLINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333445566889999999999632 1 268999998876432 13334556678899999998887765
No 113
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=34.49 E-value=1e+02 Score=28.16 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHcCcccCC---------CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 733 EFLRISNVIHETRALDIN---------TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 733 ~f~~~~~VL~~lgyld~~---------~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
.-.++++-|.+-|||... -..+|.+|+...+--. -...-+...++.+|+++++..+...+
T Consensus 73 ~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 73 SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN----NIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH----HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345788899999999642 1369999998775432 12344556688999999999887764
No 114
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=34.25 E-value=2.2e+02 Score=30.54 Aligned_cols=27 Identities=11% Similarity=-0.134 Sum_probs=21.3
Q ss_pred CCCCCeEEEEcChHhHHHHHHHhhhCC
Q 002426 189 RDMLPAIWFIFNRRGCDAAVQYLEDCN 215 (924)
Q Consensus 189 ~~~~p~IVF~~Sr~~ce~~a~~L~~~~ 215 (924)
.....++||+...+.-+-+..+|...+
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~~~ 149 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLGNK 149 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTTSS
T ss_pred hCCCEEEEEECChhHHHHHHHHHhcCC
Confidence 345689999999999888888886544
No 115
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.63 E-value=64 Score=24.49 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccH---HHHHHHHHHHhHcC
Q 002426 707 EKIKRLKARSKRLTKRIEQIEPSGW---KEFLRISNVIHETR 745 (924)
Q Consensus 707 ~~~~~l~~~~~~l~~~i~~~~~~~~---~~f~~~~~VL~~lg 745 (924)
++...|+.+-..|+++++.-+..+. .+-..|+.||++|+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 3344455555556666655544432 33348888888875
No 116
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=32.12 E-value=1.3e+02 Score=27.65 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHhhccccHHHHHHHHHHHhHcCcc----cCCCC-----ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHH
Q 002426 720 TKRIEQIEPSGWKEFLRISNVIHETRAL----DINTQ-----VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790 (924)
Q Consensus 720 ~~~i~~~~~~~~~~f~~~~~VL~~lgyl----d~~~~-----~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lA 790 (924)
..++......-...-.++++-|.+-||| ++++. .+|.+|+-+.+ ++.-..--....|.+|+++|+.
T Consensus 54 ~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~-----~~~~~~~~~~~~l~~l~~ee~~ 128 (147)
T 4b8x_A 54 MSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE-----AATRDLMAMDFGLGAYDAEECG 128 (147)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH-----HHHHHHHHTGGGTTTSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH-----HHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHhhh
Q 002426 791 AVCASL 796 (924)
Q Consensus 791 AllS~~ 796 (924)
.+...|
T Consensus 129 ~l~~~L 134 (147)
T 4b8x_A 129 EIFAML 134 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 117
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.77 E-value=1.2e+02 Score=27.27 Aligned_cols=72 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHhhccccHHHHHHHHHHHhHcCcc----cCCCC-----ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHH
Q 002426 721 KRIEQIEPSGWKEFLRISNVIHETRAL----DINTQ-----VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791 (924)
Q Consensus 721 ~~i~~~~~~~~~~f~~~~~VL~~lgyl----d~~~~-----~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAA 791 (924)
.++....+.-...-.++++-|.+-||| ++.+. .+|.+|+.+.+-. .-...-+...+|++|+++++..
T Consensus 51 ~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~ 126 (139)
T 3eco_A 51 NDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF----TSIFDEMEQTLVSQLSEEENEQ 126 (139)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHH
Q ss_pred HHhhh
Q 002426 792 VCASL 796 (924)
Q Consensus 792 llS~~ 796 (924)
+...+
T Consensus 127 l~~~l 131 (139)
T 3eco_A 127 MKANL 131 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
No 118
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.82 E-value=59 Score=29.63 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHhhccccHHHHHHHHHHHhHcCcccCCCC---------ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHH
Q 002426 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---------VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790 (924)
Q Consensus 720 ~~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~~---------~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lA 790 (924)
..++....+.-...-.++++-|.+-|||..... .+|.+|+.+.+-... ...-+...++.+|+++++.
T Consensus 54 ~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~ 129 (142)
T 3ech_A 54 LQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL----IMSRVHDELFAPLTPVEQA 129 (142)
T ss_dssp HHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHH
Q ss_pred HHHhhh
Q 002426 791 AVCASL 796 (924)
Q Consensus 791 AllS~~ 796 (924)
.+...+
T Consensus 130 ~l~~~l 135 (142)
T 3ech_A 130 TLVHLL 135 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 119
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=30.74 E-value=1.2e+02 Score=27.87 Aligned_cols=60 Identities=2% Similarity=-0.007 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 730 GWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 730 ~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
-...-.++++-|.+.|||... + ..+|.+|+-+.+-. .+.+..-++.+|++++++.+...+
T Consensus 68 ~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~-------~~~~~~~~~~~l~~~e~~~l~~~l 136 (149)
T 4hbl_A 68 SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV-------FEAISSCLPQEFDTTEYDETKYVF 136 (149)
T ss_dssp CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH-------HHHHHTTSCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH-------HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 345556889999999999642 1 26999999876432 122222278888998888777654
No 120
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.69 E-value=70 Score=36.77 Aligned_cols=59 Identities=7% Similarity=-0.051 Sum_probs=48.2
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
..+||.++++.-+...++.+...++ .+++.||+.+...+..+...+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi----------------------------------~~~~l~~~~~~~~~~~~~~~~ 111 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGV----------------------------------AAACLNSTQTREQQLEVMTGC 111 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHHHHHHH
Confidence 4789999999888777776654332 567899999999998888889
Q ss_pred hCCCeeEEEEccc
Q 002426 272 QRGLVKVVFATET 284 (924)
Q Consensus 272 ~~G~ikVL~AT~t 284 (924)
..|..+++++|+-
T Consensus 112 ~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 112 RTGQIRLLYIAPE 124 (523)
T ss_dssp HHTCCSEEEECHH
T ss_pred hcCCCCEEEECHH
Confidence 9999999999964
No 121
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=29.49 E-value=98 Score=37.50 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhhccc
Q 002426 732 KEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 800 (924)
Q Consensus 732 ~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v~e~ 800 (924)
....+-++.|..+|+||+++ .+|..|+.++++.- +--+--.++....|.-+ .+++.++|++-..+
T Consensus 489 ~~i~~a~~~L~~lgald~~~-~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~--~~~l~i~a~ls~~~ 553 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEG-NLTPLGRLASQFPL-DPMLAVMLIGSFEFQCS--QEILTIVAMLSVPN 553 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTS-CBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCH--HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHcCCcccCC-CcChhhhhhccccC-CHHHHHHHHhhcccCch--hHHHHHHHhcccCC
Confidence 44557788999999999875 79999999999985 43333344444444433 34444555544444
No 122
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=29.13 E-value=1.3e+02 Score=24.43 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002426 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730 (924)
Q Consensus 671 ~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~ 730 (924)
.+.....++..|+.++.....- + -|.+|.+|++++..+..+++.....+
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQ---D--------eFAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQ---D--------NYAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTT---T--------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667788888887765541 1 36778888888777777776654433
No 123
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=28.93 E-value=1.3e+02 Score=29.52 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
.++||.++++.-+.+.++.+.... ...+ ...++..|||....... ..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~------------------~~~~-----------~~~v~~~~g~~~~~~~~---~~~ 130 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFS------------------KYMP-----------NVKVAVFFGGLSIKKDE---EVL 130 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHT------------------TTST-----------TCCEEEESCCSCHHHHH---HHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHH------------------hhCC-----------CceEEEEeCCCChHHHH---HHH
Confidence 479999999999888777665211 0000 12578889998865443 234
Q ss_pred hCCCeeEEEEccccc------cccCCCCceEEEe
Q 002426 272 QRGLVKVVFATETLA------AGINMPARTAVLS 299 (924)
Q Consensus 272 ~~G~ikVL~AT~tla------~GINmPa~~VVI~ 299 (924)
.++..+|+|+|.-.. ..+++....+||-
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 556779999996321 2355666554443
No 124
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.62 E-value=77 Score=37.12 Aligned_cols=59 Identities=7% Similarity=0.028 Sum_probs=47.4
Q ss_pred CCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHHh
Q 002426 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271 (924)
Q Consensus 192 ~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~lF 271 (924)
..+||.++++.-+...++.|...++ .+++.||++....+..+...+
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi----------------------------------~~~~l~~~~~~~~~~~~~~~l 130 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGI----------------------------------SATMLNASSSKEHVKWVHAEM 130 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTC----------------------------------CEEECCSSCCHHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCC----------------------------------cEEEEeCCCCHHHHHHHHHHh
Confidence 4789999999888877776653322 568899999999988888777
Q ss_pred --hCCCeeEEEEccc
Q 002426 272 --QRGLVKVVFATET 284 (924)
Q Consensus 272 --~~G~ikVL~AT~t 284 (924)
..+..+||++|+-
T Consensus 131 ~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 131 VNKNSELKLIYVTPE 145 (591)
T ss_dssp HCTTCCCCEEEECHH
T ss_pred hcccCCCCEEEEChh
Confidence 5789999999983
No 125
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=28.58 E-value=1.5e+02 Score=28.53 Aligned_cols=72 Identities=8% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHhhccccHHHHHHHHHHHhHcCcc----cCCCC-----ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHH
Q 002426 721 KRIEQIEPSGWKEFLRISNVIHETRAL----DINTQ-----VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791 (924)
Q Consensus 721 ~~i~~~~~~~~~~f~~~~~VL~~lgyl----d~~~~-----~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAA 791 (924)
.+|....+.-...-.++++-|.+-||| ++++. .+|.+|+.++.-. .-...-+...+|.+|+++++..
T Consensus 61 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~ee~~~ 136 (189)
T 3nqo_A 61 NNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTC----SRTGINFMADVFHEFTKDELET 136 (189)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH----HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHH
Q ss_pred HHhhh
Q 002426 792 VCASL 796 (924)
Q Consensus 792 llS~~ 796 (924)
+...+
T Consensus 137 l~~~L 141 (189)
T 3nqo_A 137 LWSLL 141 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
No 126
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.53 E-value=96 Score=28.18 Aligned_cols=58 Identities=5% Similarity=-0.023 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHH
Q 002426 827 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888 (924)
Q Consensus 827 ~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~e 888 (924)
..+.+.+......+|+..+. +.++..++. ..|.+..+|.+...+..+.+-|.+++|++
T Consensus 14 ~~~~~~~~~~~~~~~lt~~q---~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 14 NLICNVFDKWIGQQDLNYNL---FAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHHHHHHHTTTCCHHH---HHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHH---HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555667764332 234444432 45699999999999999999999999987
No 127
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=27.44 E-value=1.4e+02 Score=27.63 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHcCcccCC---------CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN---------TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~---------~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... ...+|.+|+....-.. +. ..-+...++..++++++..+...+
T Consensus 77 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 147 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA--PL--VNEMEQRLMSVFSAEEQQTLERLI 147 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH--HH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556788899999999652 1368999987765331 11 233445567888998887766554
No 128
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.39 E-value=1.3e+02 Score=27.16 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... + ..+|.+|+....-. .-..+-+...++.+++++++..+...+
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI----EAIAASVRNDVLTGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH----HHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455788899999999532 1 26899999877543 122334556678899999988877654
No 129
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=26.88 E-value=1.5e+02 Score=27.46 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHhhccccHHHHHHHHHHHhHcCcc----cCCCC-----ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHH
Q 002426 721 KRIEQIEPSGWKEFLRISNVIHETRAL----DINTQ-----VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791 (924)
Q Consensus 721 ~~i~~~~~~~~~~f~~~~~VL~~lgyl----d~~~~-----~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAA 791 (924)
.++....+.-...-.++++-|.+.||| ++++. .+|.+|+.++.-. .=...-+...+|.+++++++..
T Consensus 68 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~ 143 (159)
T 3s2w_A 68 ESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM----KKIASEWGEILFSSFDDRQRRE 143 (159)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH----HHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHhhh
Q 002426 792 VCASL 796 (924)
Q Consensus 792 llS~~ 796 (924)
+...+
T Consensus 144 l~~~l 148 (159)
T 3s2w_A 144 ITNSL 148 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
No 130
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.53 E-value=1.5e+02 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHcCcccCC---------CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN---------TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~---------~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... ...+|.+|+.+.+-.. + ...-+...++.+++++++..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 138 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS--D--FAIEREKQLLEEFEEAEKDQLFILL 138 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH--H--HTHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556888889999999642 1378999998876432 1 1222445577889999988877654
No 131
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.20 E-value=1.8e+02 Score=23.57 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002426 424 ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRR 480 (924)
Q Consensus 424 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 480 (924)
...++..++-.+..++..-.. -++|..|++|+.++.++...+..+...
T Consensus 7 ~~~~l~~E~~~lk~E~~stSa---------QDeFAKWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISA---------QDNYAKWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCT---------TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777766653222 358999999999998776555555444
No 132
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=25.50 E-value=1.2e+02 Score=27.40 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHhhccccHHHHHHHHHHHhHcCcccCCC---------CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHH
Q 002426 721 KRIEQIEPSGWKEFLRISNVIHETRALDINT---------QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 791 (924)
Q Consensus 721 ~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~---------~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAA 791 (924)
.++...-+.-...-.++++-|.+-|||.... ..+|.+|+....-. .-...-+...++.+++++++..
T Consensus 47 ~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~ 122 (144)
T 1lj9_A 47 EKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII----VRENQHSNQVALQGLSEVEISQ 122 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH----HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHH
Q ss_pred HHhhh
Q 002426 792 VCASL 796 (924)
Q Consensus 792 llS~~ 796 (924)
+...+
T Consensus 123 l~~~l 127 (144)
T 1lj9_A 123 LADYL 127 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
No 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=24.84 E-value=53 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=28.1
Q ss_pred CccEEEEccccccCCCCchHHHHHHHHh--C-CCCccEEEEcccCCCHHH
Q 002426 23 DVDVIVLDEVHYLSDISRGTVWEEIIIY--C-PKEVQIICLSATVANADE 69 (924)
Q Consensus 23 ~v~~VVlDE~H~l~D~~RG~v~Eeii~~--l-p~~~qiV~LSATi~N~~e 69 (924)
..-+||+||+|+|.+ . .++..++.. . ..++-+|+.++|+.++..
T Consensus 132 ~~~ii~lDE~d~l~~--q-~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 132 RKTLILIQNPENLLS--E-KILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp CEEEEEEECCSSSCC--T-HHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred CceEEEEecHHHhhc--c-hHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 456999999999982 2 223222221 1 235677888999987653
No 134
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.75 E-value=1.4e+02 Score=27.24 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHcCcccC--C----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDI--N----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~--~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||.. . + ..+|.+|+.+.+-....+ +. .-....++.+++++++..+...+
T Consensus 69 ~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~-~~-~~~~~~~~~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 69 GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANA-FM-YKAMMKVFENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCH-HH-HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhH-HH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455678899999999976 1 1 268999998765443332 11 23445567889999988877665
No 135
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.68 E-value=52 Score=23.89 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHH
Q 002426 852 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 886 (924)
Q Consensus 852 l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl 886 (924)
...++..|..|.|..+|++..++....|-|++++.
T Consensus 11 ~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 11 QEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 45566678899999999999999999999987653
No 136
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.18 E-value=1.2e+02 Score=27.89 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... + ..+|.+|+....-.. + ...-+...++++|+++++..+...+
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~ee~~~l~~~L 142 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL--S--NFESLLKSVLEKFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44556788999999999531 1 268999988765431 1 2233445577888999888776654
No 137
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=24.16 E-value=47 Score=26.35 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCchHHHHHHHHhCC-CCHHHHHHh
Q 002426 847 CLDSQFSGMVEAWASG-LTWREMMMD 871 (924)
Q Consensus 847 ~~~~~l~~~v~~Wa~G-~~f~~i~~~ 871 (924)
++++.+.+.+..|+.| .|++++.+.
T Consensus 27 Epd~~~l~~~erwv~GEis~~e~i~~ 52 (61)
T 3shg_B 27 EPDPQVVAQMERVVVGELETSDVIKD 52 (61)
T ss_dssp CCCHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 3788999999999999 899888753
No 138
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=23.57 E-value=1.3e+02 Score=27.96 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhHcCcc----cCCCC-----ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 736 RISNVIHETRAL----DINTQ-----VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 736 ~~~~VL~~lgyl----d~~~~-----~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
++++-|.+-||| +.++. .+|.+|+.+.+-. .-...-+...+|.+|++++++.+...+
T Consensus 79 ~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 79 KILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQC----NQVVQQLEAQMLQGVDINLAFLIRNNL 144 (162)
T ss_dssp HHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
No 139
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=23.36 E-value=1.4e+02 Score=37.49 Aligned_cols=62 Identities=10% Similarity=-0.092 Sum_probs=46.8
Q ss_pred CCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhcc----ceEEEcCCCCHHHHH
Q 002426 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK----GVAAHHAGCLPIWKS 265 (924)
Q Consensus 190 ~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~----GVa~hH~gl~~~~R~ 265 (924)
....+||.++++.-|.+.++.+.... ..+.- .++..|||.+...+.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~------------------------------~~~~i~~~~~v~~~~Gg~~~~~~~ 147 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYA------------------------------EKAGVGTENLIGYYHGRIPKREKE 147 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHH------------------------------TTTCCSGGGSEEECCSSCCSHHHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH------------------------------hhcCCCccceEEEEeCCCChhhHH
Confidence 34589999999999988887765211 11111 578999999998887
Q ss_pred HHHHHhhCCCeeEEEEcc
Q 002426 266 FIEELFQRGLVKVVFATE 283 (924)
Q Consensus 266 ~VE~lF~~G~ikVL~AT~ 283 (924)
.....+++ .+|+|+|+
T Consensus 148 ~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 148 NFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp HHHHSGGG--CSEEEEEH
T ss_pred HHHhhccC--CCEEEEcH
Confidence 77777776 89999997
No 140
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=23.14 E-value=2.1e+02 Score=25.65 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhHcCcccCC---------CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN---------TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~---------~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+-|||... ...+|.+|+....-.... .-...-....++.+++++++..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~e~~~l~~~l 138 (146)
T 3tgn_A 65 QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHH-HEHTLLTYEQVATQFTPNEQKVIQRFL 138 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHH-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556889999999999642 136899998887544210 023344456677899999988876654
No 141
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.96 E-value=1.8e+02 Score=22.92 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhh
Q 002426 847 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 892 (924)
Q Consensus 847 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Q 892 (924)
.+.+.-..++..++.|.|..+|.+..++.++.+=+.++|+.+-|+.
T Consensus 11 ~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 11 LLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4777777888888999999999999999999999999998877764
No 142
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.77 E-value=1.6e+02 Score=26.54 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCc---hHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHH
Q 002426 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDS---QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888 (924)
Q Consensus 818 ~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~---~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~e 888 (924)
........+..+...+.......- . +..+.+ .++..++....|.+..+|.+...+..+.+-|.+++|++
T Consensus 5 ~~~~l~~~l~~~~~~~~~~~~~~~-~-~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 5 QDLQLAAHLRSQVTTLTRRLRREA-Q-ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-C-CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-c-ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 334445555555555555444321 1 111222 23333332245789999999999999999999999998
No 143
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=22.65 E-value=1.5e+02 Score=27.04 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHcCcccC----C-------CCccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 732 KEFLRISNVIHETRALDI----N-------TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 732 ~~f~~~~~VL~~lgyld~----~-------~~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
..-.++++-|.+-|||.. + ...+|.+|+....-.. -...-+...+|.+++++++..+...+
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK----AIMSHIASDMTSDFDSKEIEKVRQVL 137 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH----HHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345578889999999974 1 1378999998775432 12344556688999999998887765
No 144
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=22.61 E-value=1e+02 Score=28.06 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 730 GWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 730 ~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
-...-.++++-|.+.|||... + ..+|.+|+-+.+-.. + ...-+.+.+|.+|++++++.+...+
T Consensus 58 ~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 129 (145)
T 3g3z_A 58 PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT--E--SAQEFSDKVFATFGDKRTTRLFADL 129 (145)
T ss_dssp CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH--H--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH--H--HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 344556888999999999631 1 268999998764321 1 1223344456678888888777664
No 145
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.29 E-value=1.5e+02 Score=27.39 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 731 WKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 731 ~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
...-.++++-|.+.|||... + ..+|.+|+...+-.. -...-+...++.+|+++++..+...+
T Consensus 80 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 150 (162)
T 3cjn_A 80 QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW----PHMRASHDRMFQGITPQERQAFLATL 150 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44556788999999999631 1 268999987765431 12234455678889999988776654
No 146
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=21.47 E-value=3.6e+02 Score=26.71 Aligned_cols=59 Identities=12% Similarity=-0.095 Sum_probs=38.4
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
...+||.++++.-|.+.++.+.. +.......++..|||..........
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~-- 149 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAE------------------------------YCRACRLKSTCIYGGAPKGPQIRDL-- 149 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH------------------------------HHHHTTCCEEEECTTSCHHHHHHHH--
T ss_pred CCEEEEEeCcHHHHHHHHHHHHH------------------------------HHhhcCceEEEEECCCChHHHHHHh--
Confidence 44689999999988877766542 1111223577889998876544332
Q ss_pred hhCCCeeEEEEcc
Q 002426 271 FQRGLVKVVFATE 283 (924)
Q Consensus 271 F~~G~ikVL~AT~ 283 (924)
.+ ..+|+|+|+
T Consensus 150 -~~-~~~I~v~Tp 160 (242)
T 3fe2_A 150 -ER-GVEICIATP 160 (242)
T ss_dssp -HH-CCSEEEECH
T ss_pred -cC-CCCEEEECH
Confidence 22 367899986
No 147
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=21.44 E-value=4.9e+02 Score=25.93 Aligned_cols=75 Identities=16% Similarity=0.028 Sum_probs=45.8
Q ss_pred CCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCCcccchhHHhhhccceEEEcCCCCHHHHHHHHHH
Q 002426 191 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 270 (924)
Q Consensus 191 ~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~~~~~~~~~~~L~~GVa~hH~gl~~~~R~~VE~l 270 (924)
...+||.++++.-|.+.++.+... .......++..+||.....+....
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~------------------------------~~~~~~~~~~~~g~~~~~~~~~~~-- 158 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEAL------------------------------GSSIGVQSAVIVGGIDSMSQSLAL-- 158 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHH------------------------------HGGGTCCEEEECTTSCHHHHHHHH--
T ss_pred CceEEEEeCCHHHHHHHHHHHHHH------------------------------hccCCeeEEEEECCCChHHHHHHh--
Confidence 346999999999888877766421 111223577889998865443221
Q ss_pred hhCCCeeEEEEccccc-------cccCCCCceEEEe
Q 002426 271 FQRGLVKVVFATETLA-------AGINMPARTAVLS 299 (924)
Q Consensus 271 F~~G~ikVL~AT~tla-------~GINmPa~~VVI~ 299 (924)
.+..+|+|+|.--. .++++....+||-
T Consensus 159 --~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 159 --AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp --HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred --cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 24578999995321 2455665554443
No 148
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.13 E-value=2.4e+02 Score=24.40 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHhccCCchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhHcCc
Q 002426 667 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRA 746 (924)
Q Consensus 667 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgy 746 (924)
.....+....+++.+|+.++.....-.. |.+|.+|++++..+..+++.....+...=...-..|..|..
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDe-----------FAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~ 88 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDN-----------YAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLEH 88 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 149
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=20.90 E-value=61 Score=31.53 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=12.2
Q ss_pred CccEEEEccccccC
Q 002426 23 DVDVIVLDEVHYLS 36 (924)
Q Consensus 23 ~v~~VVlDE~H~l~ 36 (924)
+.++||+||+|++.
T Consensus 76 ~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 76 DTRGVFIDEVQFFN 89 (184)
T ss_dssp TEEEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 57899999999974
No 150
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.81 E-value=1.7e+02 Score=22.74 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCchHHHHHHH-HhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Q 002426 848 LDSQFSGMVEA-WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 894 (924)
Q Consensus 848 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~ 894 (924)
+.+.--.++.. +..|.|+.+|.+..++.++.+=+.+.|...-|++.-
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 55666666654 699999999999999999999999999998888754
No 151
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.75 E-value=1.4e+02 Score=27.18 Aligned_cols=64 Identities=5% Similarity=-0.060 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhHcCcccCC----C-----CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhhh
Q 002426 730 GWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797 (924)
Q Consensus 730 ~~~~f~~~~~VL~~lgyld~~----~-----~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~v 797 (924)
-...-.++++-|.+.|||... + ..+|.+|+...+-.. + ...-+...++.+|+++++..+...+-
T Consensus 64 s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l~ 136 (155)
T 1s3j_A 64 KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL--A--GRKAIMARYLSFLTEEEMLQAAHITA 136 (155)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556788999999999531 1 268999987765432 1 12234455778899999888777654
No 152
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=20.61 E-value=1.2e+02 Score=28.02 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHhHcCcccCCC---------CccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 002426 734 FLRISNVIHETRALDINT---------QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 796 (924)
Q Consensus 734 f~~~~~VL~~lgyld~~~---------~~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lAAllS~~ 796 (924)
-.++++-|.+.|||.... ..+|.+|+....-.. + ...-....+|.+++++++..+...+
T Consensus 79 vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 146 (160)
T 3boq_A 79 VSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS--E--AHNRILAELLRAVSDQDMVEASAAL 146 (160)
T ss_dssp HHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346778889999996421 269999998775321 1 1233445578889999988776654
No 153
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.55 E-value=2e+02 Score=25.72 Aligned_cols=73 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHhhccccHHHHHHHHHHHhHcCcccCCCC---------ccChhhHHHHhhhCCchHHHHHHHHhcccCCCCHHhHH
Q 002426 720 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---------VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790 (924)
Q Consensus 720 ~~~i~~~~~~~~~~f~~~~~VL~~lgyld~~~~---------~vt~kGr~a~~I~~~~ELlltell~~g~~~~L~p~~lA 790 (924)
..++....+.-...-.++++-|.+.|||..... .+|.+|+....-. .-..+-+...++.+++++++.
T Consensus 53 ~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~ 128 (146)
T 2gxg_A 53 MAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG----IEIYKKLANEVTGDLSEDEVI 128 (146)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH----HHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHH
Q ss_pred HHHhhh
Q 002426 791 AVCASL 796 (924)
Q Consensus 791 AllS~~ 796 (924)
.+...+
T Consensus 129 ~l~~~l 134 (146)
T 2gxg_A 129 LVLDKI 134 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 154
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.42 E-value=60 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=22.2
Q ss_pred ccEEEEccccccCCCC-ch----HHHHHHHHhCCCCccEEEEccc
Q 002426 24 VDVIVLDEVHYLSDIS-RG----TVWEEIIIYCPKEVQIICLSAT 63 (924)
Q Consensus 24 v~~VVlDE~H~l~D~~-RG----~v~Eeii~~lp~~~qiV~LSAT 63 (924)
-.+||+||||.+.... .+ ..+..+...-....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999994211 11 1111111122345688888776
No 155
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=20.33 E-value=2.1e+02 Score=25.47 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHH
Q 002426 820 INVINVLDEHRSSFLELQEKH-GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 888 (924)
Q Consensus 820 ~~~~~~l~~~~~~l~~~~~~~-~l~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~e 888 (924)
......+..+.+.+.....++ +++.+ ...++..++. ..|.+..+|.+...+..+.+-|.+++|++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 6 EDLLYRLKVADETISNLFEKQLGISLT---RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHH---HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555666666555554 55432 1223333322 36799999999999999999999999998
Done!