BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002427
(924 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 295/782 (37%), Positives = 440/782 (56%), Gaps = 74/782 (9%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGK 193
+ GMTCA CV S+E + + +GV + R + + + FD + + ++ I G
Sbjct: 8 VTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYG- 66
Query: 194 FQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGP 253
V++ A +++ + E S M R + F + + F+ I L Y
Sbjct: 67 ----VVDEQAAVSA-EVEHLSRMKRKLYVAAFAGVLLLFL---AHFISLPYE-------- 110
Query: 254 FLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYG 313
D++ + F G + AA ALR + NMDV+ ++G AA+ SV + G
Sbjct: 111 ----DFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLST-AG 165
Query: 314 VVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKD--KV 371
V+ +S ++ETS +L+ F+L G+ LE AK +T +AIKKLV L TA+ V++D ++
Sbjct: 166 VLPREYS--FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAV-VIRDGKEI 222
Query: 372 GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSP 431
+EE + GD + V PG K+P DG+VV G SYV+ESM++GE VPVLK
Sbjct: 223 AVPVEE-------VAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDE 275
Query: 432 VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTL 491
V G TIN GVL I+AT+VG + +L+QI+ LVE A SK PIQ+ AD V + F+P V+ +
Sbjct: 276 VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLV 335
Query: 492 ALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT 551
A+ ++ WY + P +FA I+V+V+ACPCA GLATPTA+ V
Sbjct: 336 AISAFIYWY---FIAHAP----------LLFAFTTLIAVLVVACPCAFGLATPTALTVGM 382
Query: 552 GVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS 611
G GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A
Sbjct: 383 GKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAI 441
Query: 612 AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQ 671
AE SEHP+A+A+V+ A H E L + + G G+
Sbjct: 442 AERRSEHPIAEAIVKKALE---------------HGIE------LGEPEKVEVIAGEGVV 480
Query: 672 CFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPV 731
+LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D +
Sbjct: 481 A----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTL 536
Query: 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD 791
K A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 537 KESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK 596
Query: 792 GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTF 851
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT
Sbjct: 597 -EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTM 655
Query: 852 ARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMAXXXXXXXXXXXXXRRYK 911
++I+ N +A+ YNVI IP AAG+ +P G+ P AG MA R Y
Sbjct: 656 SKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYV 715
Query: 912 KP 913
P
Sbjct: 716 PP 717
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
V VTGMTCA C S+E A+ L+GV + V L A + FD + E IK IED G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/646 (41%), Positives = 386/646 (59%), Gaps = 53/646 (8%)
Query: 270 FVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAM 329
F G + AA ALR + NMDV+ ++G AA+ SV + GV+ +S ++ETS +
Sbjct: 45 FYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLST-AGVLPREYS--FYETSVL 101
Query: 330 LITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKD--KVGKCIEEREIDALLIQS 387
L+ F+L G+ LE AK +T +AIKKLV L TA+ V++D ++ +EE +
Sbjct: 102 LLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAV-VIRDGKEIAVPVEE-------VAV 153
Query: 388 GDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQA 447
GD + V PG K+P DG+VV G SYV+ESM++GE VPVLK V G TIN GVL I+A
Sbjct: 154 GDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRA 213
Query: 448 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA 507
T+VG + +L+QI+ LVE A SK PIQ+ AD V + F+P V+ +A+ ++ WY +
Sbjct: 214 TRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWY---FIAH 270
Query: 508 YPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 567
P +FA I+V+V+ACPCA GLATPTA+ V G GA G+LIK DAL
Sbjct: 271 AP----------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADAL 320
Query: 568 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEY 627
E A+K+ VIFDKTGTLT+G+ VT V D E L L A AE SEHP+A+A+V+
Sbjct: 321 EVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAERRSEHPIAEAIVKK 379
Query: 628 ARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLL 687
A H E L + + G G+ +LVGN++L+
Sbjct: 380 ALE---------------HGIE------LGEPEKVEVIAGEGVVA----DGILVGNKRLM 414
Query: 688 NESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV 747
+ G+ + + VE + +LE A+T ++VA + + G++ ++D +K A V+ L +MG+
Sbjct: 415 EDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGI 474
Query: 748 RPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPA 807
+ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q +VA VGDGIND+PA
Sbjct: 475 KVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 533
Query: 808 LAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI 867
LA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT ++I+ N +A+ YNVI
Sbjct: 534 LAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 593
Query: 868 AIPIAAGVFFPSLGIKLPPWAAGACMAXXXXXXXXXXXXXRRYKKP 913
IP AAG+ +P G+ P AG MA R Y P
Sbjct: 594 LIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPP 639
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/697 (37%), Positives = 383/697 (54%), Gaps = 65/697 (9%)
Query: 210 SEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGD---WLNWALVS 266
S E +M R F +L L+IPV + + + F+ G+ W+ L +
Sbjct: 75 SPEYLDMRRRFWIALMLTIPVVILEMGGHGLK-----------HFISGNGSSWIQLLLAT 123
Query: 267 VVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVV--TGFWSP--- 321
V G F+ ++L+ G NM L+A+G A+ YS+ A+L+ V F S
Sbjct: 124 PVVLWGGWPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGV 183
Query: 322 --TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEERE 379
YFE +A++ T VL G+ LE+ A+ +T AI+ L++L P +A + +D E E
Sbjct: 184 VAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDG-----SEEE 238
Query: 380 IDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINL 439
+ + GD L+V PG K+P DG V G S+V+ESMVTGE +PV KE ++ VIG TIN
Sbjct: 239 VSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQ 298
Query: 440 HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCW 499
G ++A VGSD +L++I+ +V AQ S+APIQ+ AD V+ FVP V+ +A+ +++ W
Sbjct: 299 TGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVW 358
Query: 500 YVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGV 559
+LG P + L+ ++SV++IACPCALGLATP ++MV G GA +GV
Sbjct: 359 ---ALLGPQPA---------LSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGV 406
Query: 560 LIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHP 619
LIK +ALER +K+ ++ DKTGTLT+G +T V L L A+ E SEHP
Sbjct: 407 LIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI-VTDDFVEDNALALAAALEHQSEHP 465
Query: 620 LAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQV 679
LA A+V A+ S GS V F A G+G+ + G V
Sbjct: 466 LANAIVHAAKEKGL----------------SLGS-----VEAFEAPTGKGVVGQVDGHHV 504
Query: 680 LVGNRKLLNESGITIPDHVESF--VVELEESARTGILVAYDDNLIGVMGIADPVKREAAV 737
+GN +L+ E G D+ F EL + + +A D + ++ + DP+K
Sbjct: 505 AIGNARLMQEHG---GDNAPLFEKADELRGKGASVMFMAVDGKTVALLVVEDPIKSSTPE 561
Query: 738 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAM 797
+ L + G+ VM+TGD+ RTA AVA +GI+ V+A++MP K+ V + G IVAM
Sbjct: 562 TILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAM 621
Query: 798 VGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLN 857
GDG+ND+PALA AD+G+A+G GTD+AIE+A L+ L + A LS T + IR N
Sbjct: 622 AGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQN 681
Query: 858 YIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMA 894
FA YNV+ +P+AAGV +P G+ L P A A MA
Sbjct: 682 LFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMA 718
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 186/303 (61%), Gaps = 29/303 (9%)
Query: 554 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE 613
GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE
Sbjct: 13 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAE 71
Query: 614 ASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC 672
SEHP+A+A+V+ A H +P + G G+
Sbjct: 72 RRSEHPIAEAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA 109
Query: 673 FISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 732
+LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D +K
Sbjct: 110 ----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLK 165
Query: 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792
A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 166 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK- 224
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 852
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT +
Sbjct: 225 EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMS 284
Query: 853 RIR 855
+I+
Sbjct: 285 KIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 185/303 (61%), Gaps = 29/303 (9%)
Query: 554 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE 613
GA G+LIK DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE
Sbjct: 13 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAE 71
Query: 614 ASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC 672
SE P+A+A+V+ A H +P + G G+
Sbjct: 72 RRSEQPIAEAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA 109
Query: 673 FISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 732
+LVGN++L+ + G+ + + VE + +LE A+T ++VA + + G++ ++D +K
Sbjct: 110 ----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLK 165
Query: 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792
A V+ L +MG++ M+TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 166 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK- 224
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 852
+VA VGDGIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT +
Sbjct: 225 EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMS 284
Query: 853 RIR 855
+I+
Sbjct: 285 KIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 175/293 (59%), Gaps = 29/293 (9%)
Query: 562 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLA 621
K DALE A+K+ VIFDKTGTLT+G+ VT V D E L L A AE SEHP+A
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL-VPLNGDERELLRLAAIAERRSEHPIA 59
Query: 622 KAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVL 680
+A+V+ A H +P + G G+ +L
Sbjct: 60 EAIVKKALEHGIELGEPE----------------------KVEVIAGEGVVA----DGIL 93
Query: 681 VGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVE 740
VGN++L + G+ + + VE + +LE A+T ++VA + + G++ ++D +K A V+
Sbjct: 94 VGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQ 153
Query: 741 GLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGD 800
L + G++ +TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q +VA VGD
Sbjct: 154 ELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGD 212
Query: 801 GINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 853
GIND+PALA AD+G+A+G+G+D+A+E+ D VL+R+ L DV+ AI LSRKT ++
Sbjct: 213 GINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 198 bits (504), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 177/289 (61%), Gaps = 27/289 (9%)
Query: 566 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVV 625
A ERA+ ++ VIFDKTGTLT+GR VT F + E L + AS EA SEHP+A A+V
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSE-DELLQIAASLEARSEHPIAAAIV 64
Query: 626 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 685
E A E G G L +V +F A+PG+G++ ++G++ +V +
Sbjct: 65 EEA--------------------EKRGFG-LTEVEEFRAIPGKGVEGIVNGRRYMVVSPG 103
Query: 686 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM 745
+ E GI + VE +L++ +T + + + + GV+ +AD ++ E+ + L +
Sbjct: 104 YIRELGIKTDESVE----KLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAI 159
Query: 746 GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 805
G++ +M+TGDN A VA E+G+ D A+V+P KA+ V+ Q+ + AMVGDG+ND+
Sbjct: 160 GIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDA 218
Query: 806 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARI 854
PALA ADVG+AIGAGTD+A+E AD VL+RN DV ++LSRKT++++
Sbjct: 219 PALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 176/288 (61%), Gaps = 27/288 (9%)
Query: 566 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVV 625
A ERA+ ++ VIFDKTGTLT+GR VT F + E L + AS EA SEHP+A A+V
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSE-DELLQIAASLEARSEHPIAAAIV 64
Query: 626 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 685
E A E G G L +V +F A+PG+G++ ++G++ +V +
Sbjct: 65 EEA--------------------EKRGFG-LTEVEEFRAIPGKGVEGIVNGRRYMVVSPG 103
Query: 686 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKM 745
+ E GI + VE +L++ +T + + + + GV+ +AD ++ E+ + L +
Sbjct: 104 YIRELGIKTDESVE----KLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAI 159
Query: 746 GVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 805
G++ +M+TGDN A VA E+G+ D A+V+P KA+ V+ Q+ + AMVGDG+ND+
Sbjct: 160 GIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDA 218
Query: 806 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 853
PALA ADVG+AIGAGTD+A+E AD VL+RN DV ++LSRKT+++
Sbjct: 219 PALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSK 266
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 142/587 (24%), Positives = 243/587 (41%), Gaps = 104/587 (17%)
Query: 339 YLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 398
+++ G D +KK + L +V++D K EI+A + GD L+V GT
Sbjct: 159 FVQEFQAGSIVDELKKTLALKA----VVLRDGTLK-----EIEAPEVVPGDILQVEEGTI 209
Query: 399 LPADGIVVWGTSY--VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVL 456
+PADG +V ++ V++S +TGE++ V K V + G + T G + +
Sbjct: 210 IPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFV 269
Query: 457 SQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPEN 516
+ +LV A + + + +I + +V+ FT L +V+ + P
Sbjct: 270 GRAAALVNAASGGSGHFTEVLNGIGTILLILVI----FTLLIVWVSSFYRSNP------- 318
Query: 517 GTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYV 576
V L F++++ +I P L T + V A +++ A+E ++ +
Sbjct: 319 ---IVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 577 IFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSE-----------------HP 619
DKTGTLT+ + ++ +D E L L A AS + +P
Sbjct: 376 CSDKTGTLTKNKLSLHDPYTVAGVDP-EDLMLTACLAASRKKKGIDAIDKAFLKSLKYYP 434
Query: 620 LAKAVVEYAR--HFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGK 677
AK+V+ + FH FD S S + G I C + G
Sbjct: 435 RAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQ-----------------GERITC-VKGA 476
Query: 678 QVLVGNRKLLNESGITIPDHV-ESFVVELEESARTGIL---VAYDD-----NLIGVMGIA 728
+ V K + E IP+ V +++ ++ E A G VA ++G+M
Sbjct: 477 PLFV--LKTVEEDH-PIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCM 533
Query: 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI------------------- 769
DP + + V +G+ M+TGD A +R++G+
Sbjct: 534 DPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMP 593
Query: 770 ----------QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGA 819
D A+V P K + V Q+ G +VAM GDG+ND+P+L AD G+A+
Sbjct: 594 GSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
Query: 820 GTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 866
+D A AAD V + L +I A+ SR+ F R+ ++ +A ++
Sbjct: 654 SSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 349 SDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 408
S+A+ KL+ L A +V D + E ++D L+Q GD +KV+PG K P DG V+ G
Sbjct: 6 SEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65
Query: 409 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 467
S V+ES++TGEA+PV K+ S VI G+IN +G L I AT VG+D LSQI+ LVE AQ
Sbjct: 66 HSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7, A
P- Type Atpase
Length = 74
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
MR+IQVGVTGMTCAACSNSVE ALM + GV KASVALLQN+ADVVFDP+LVK+EDIK I
Sbjct: 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEI 60
Query: 105 EDAGFEAEILAE 116
EDAGFEAEILAE
Sbjct: 61 EDAGFEAEILAE 72
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDP 174
Q + GMTCAAC NSVE L N GV + + +V+FDP
Sbjct: 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDP 48
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 81/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 613
+ G++IK + E+ ++I +IFDKTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 614 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 673
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 674 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 732
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 837
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 613
+ G++IK + E+ ++I +IF+KTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 614 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 673
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 674 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 732
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 837
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 55/285 (19%)
Query: 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLV--ASAE 613
+ G++IK + E+ ++I +IF+KTGTLT G VT G+ L+L AS E
Sbjct: 11 HKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI-------GDSLSLAYAASVE 63
Query: 614 ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF 673
A S HP+AKA+V+YA+ G +L+V DF + G G++
Sbjct: 64 ALSSHPIAKAIVKYAKE-----------QGVK----------ILEVKDFKEISGIGVRGK 102
Query: 674 ISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-DDNLIGVMGIADPVK 732
IS K ++E++++ + Y + I I+D +
Sbjct: 103 ISDK------------------------IIEVKKAENNNDIAVYINGEPIASFNISDVPR 138
Query: 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792
+E L G++ ++++GD +++E+ IQ+ +++ P K + +++G
Sbjct: 139 PNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNG 198
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSL 837
+ V M+GDG+ND+ ALA ADV +A+G G DI+ AD +L+ N +
Sbjct: 199 NKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDI 243
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 128/553 (23%), Positives = 223/553 (40%), Gaps = 83/553 (15%)
Query: 368 KDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLK 426
K KV + + E +A ++ GD + + G +PAD ++ G V++S +TGE++PV K
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 427 EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVP 486
V G+ G + G + LV++ + F + +I
Sbjct: 191 HPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ----VGHFQKVLTAIGNF 246
Query: 487 IVVTLALFTWLCWYVAGVLGAYPEQWLP-ENGTHFVFALMFSISVVVIACPCALGLATPT 545
+ ++A+ V ++ YP Q +G + L+ + +A PT
Sbjct: 247 CICSIAIGM-----VIEIIVMYPIQRRKYRDGIDNLLVLLIG----------GIPIAMPT 291
Query: 546 AVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV--TTAKVFTK 599
+ V +G++ G + K A+E + + DKTGTLT + +V +VF K
Sbjct: 292 VLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCK 351
Query: 600 MDRGEFLTLVASAEASSEHPLA------------KAVVEYARHFHFFDDPSLNP-DGQSH 646
+ + L A+ + E+ A K R HF NP D ++
Sbjct: 352 GVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFL---PFNPVDKRTA 408
Query: 647 SKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELE 706
GSG VS P + ++ + + ++K+L+ + S V +
Sbjct: 409 LTYIDGSGNWHRVS--KGAPEQILELAKASNDL---SKKVLSIIDKYAERGLRSLAVARQ 463
Query: 707 ---ESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 763
E + ++ +G++ + DP + ++A + L +GV M+TGD
Sbjct: 464 VVPEKTKESPGAPWE--FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKET 521
Query: 764 AREIGI------------------------------QDVMADVMPAGKADAVRSFQKDGS 793
R +G+ D A V P K + V+ Q+
Sbjct: 522 GRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKH 581
Query: 794 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFAR 853
IV M GDG+ND+PAL AD+G+A+ TD A A+D VL L +I A+ SR F R
Sbjct: 582 IVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQR 641
Query: 854 IRLNYIFAMAYNV 866
++ I+A++ +
Sbjct: 642 MKNYTIYAVSITI 654
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 9/114 (7%)
Query: 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK 790
+K A V+ L + G++ +TGDNWR+A A++RE+ + V+A+V+P K++ V+ Q
Sbjct: 23 LKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQA 82
Query: 791 DGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 844
+VA VGDGIND+PALA AD+G+A+G+G D VL+R+ L DV+ AI
Sbjct: 83 -KEVVAFVGDGINDAPALAQADLGIAVGSG--------DIVLIRDDLRDVVAAI 127
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 565 DALERAQKIKYVIFDKTGTLTQGRATVTTA 594
DALE A+K+ VIFDKTGTLT+ + + A
Sbjct: 1 DALEVAEKVTAVIFDKTGTLTKLKESAKPA 30
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 350 DAIKKLVELAPATALLVVKDK-VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 408
+AIKKLV L TA+++ K + +EE + GD + V PG K+P DG+VV G
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIAVPVEE-------VAVGDIVIVRPGEKIPVDGVVVEG 53
Query: 409 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETA 466
SYV+ESM++GE VPVLK V G TIN GVL I+AT+VG + +L+QI+ LVE A
Sbjct: 54 ESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 695 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 752
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 570 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 624
Query: 753 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 781
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 625 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 684
Query: 782 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 841
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 685 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 744
Query: 842 IAIDLSRKTFARIRLNYIFAMAYNV 866
A++ R + ++ + ++ NV
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 41/315 (13%)
Query: 315 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 374
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 375 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 428
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 429 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 477
N G I L I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 478 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 535
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 536 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 593
P L T + + T A +++ ++E + KTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCK 365
Query: 594 AKVFTKMDRGEFLTL 608
+ K+D G+F +L
Sbjct: 366 MFIIDKVD-GDFCSL 379
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 695 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 752
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 571 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 625
Query: 753 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 781
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 626 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 685
Query: 782 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 841
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 686 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 745
Query: 842 IAIDLSRKTFARIRLNYIFAMAYNV 866
A++ R + ++ + ++ NV
Sbjct: 746 AAVEEGRAIYNNMKQFIRYLISSNV 770
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 41/315 (13%)
Query: 315 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 374
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 86 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 137
Query: 375 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 428
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 138 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 195
Query: 429 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 477
N G I L I AT G + +I + + K P+Q+
Sbjct: 196 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 254
Query: 478 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 535
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 255 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 306
Query: 536 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 593
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 307 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 366
Query: 594 AKVFTKMDRGEFLTL 608
+ K+D G+F +L
Sbjct: 367 MFIIDKVD-GDFCSL 380
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 38/205 (18%)
Query: 695 PDHVESFVVELEESARTGILVAYDDNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMV 752
P E V L++S+R + Y+ +L +GV+G+ DP ++E ++ G+R +M+
Sbjct: 570 PPKREEMV--LDDSSR---FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 624
Query: 753 TGDNWRTAHAVAREIGI---QDVMAD----------------------------VMPAGK 781
TGDN TA A+ R IGI + +AD V P+ K
Sbjct: 625 TGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHK 684
Query: 782 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVI 841
+ V Q I AM GDG+ND+PAL A++G+A+G+GT +A A++ VL ++ ++
Sbjct: 685 SKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 744
Query: 842 IAIDLSRKTFARIRLNYIFAMAYNV 866
A++ R + ++ + ++ NV
Sbjct: 745 AAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 41/315 (13%)
Query: 315 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 374
+T F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 ITAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 375 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 428
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 429 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 477
N G I L I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 478 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 535
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 536 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 593
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 365
Query: 594 AKVFTKMDRGEFLTL 608
+ K+D G+F +L
Sbjct: 366 MFIIDKVD-GDFCSL 379
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 31/180 (17%)
Query: 718 DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI----QDV- 772
D +GV+G+ DP ++E ++ G+R +M+TGDN TA A+ R IGI +DV
Sbjct: 589 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVA 648
Query: 773 --------------------------MADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 806
A V P K+ V Q I AM GDG+ND+P
Sbjct: 649 DRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAP 708
Query: 807 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 866
AL A++G+A+G+GT +A A++ VL ++ ++ A++ R + ++ + ++ NV
Sbjct: 709 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 768
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 40/308 (12%)
Query: 315 VTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC 374
VT F P F +LI + G + E A+ +AI+ L E P + D+ K
Sbjct: 85 VTAFVEP--FVILLILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADR--KS 136
Query: 375 IEEREIDALLIQSGDTLKVLPGTKLPADGIVVW---GTSYVNESMVTGEAVPVLKEI--- 428
++ I A I GD ++V G K+PAD ++ T V++S++TGE+V V+K
Sbjct: 137 VQR--IKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 429 -----------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 477
N G I + I AT G + +I + + K P+Q+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKAIGIVAT-TGVGTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 478 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIAC-- 535
D ++ + + WL +G + + P +G ++ ++ + V
Sbjct: 254 DEFGEQLSKVISLICVAVWLI-----NIGHFND---PVHGGSWIRGAIYYFKIAVALAVA 305
Query: 536 --PCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT 593
P L T + + T A +++ ++E + DKTGTLT + +V
Sbjct: 306 AIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK 365
Query: 594 AKVFTKMD 601
+ ++D
Sbjct: 366 MFIIDRID 373
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111
+ GMTCA+C +++E L GV VAL+ KA++ +DP++++ +I I+D GFEA
Sbjct: 10 IKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEA 69
Query: 112 EILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVL 171
++ + + S G I + TI GMTCA+CV+++E L+ G+ + + V
Sbjct: 70 AVMEDYAGS----DGNI--ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVK 123
Query: 172 FDPEALSSRSLV 183
FDPE + R ++
Sbjct: 124 FDPEIIGPRDII 135
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
I++ +TGMTCA+C +++E L G+ ASVAL +KA V FDP+++ DI IE+
Sbjct: 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEE 140
Query: 107 AGFEAEI 113
GF A +
Sbjct: 141 IGFHASL 147
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 54/203 (26%)
Query: 721 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI----------- 769
+G+M + DP + V G++ +MVTGD+ TA A+A+ +GI
Sbjct: 590 FVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDI 649
Query: 770 ------------------------------QDVMADVM------------PAGKADAVRS 787
+V+ D++ P K V
Sbjct: 650 AARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEG 709
Query: 788 FQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDL 846
Q+ G+IVA+ GDG+NDSPAL AD+G+A+G +G+D++ +AAD +L+ ++ ++ ++
Sbjct: 710 CQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEE 769
Query: 847 SRKTFARIRLNYIFAMAYNVIAI 869
R F ++ + + + N+ I
Sbjct: 770 GRLIFDNLKKSIAYTLTSNIPEI 792
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%)
Query: 307 VGALLYGVVTGFWSPTYFETS-------AMLITFVLFGKYLEILAKGKTSDAIKKLVELA 359
+GA+L + G + T E + +L T V+ + K+S + +
Sbjct: 111 IGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMV 170
Query: 360 PATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVT 418
P AL V++D E+ I+A + +GD ++V G ++PAD I+ V+ S +T
Sbjct: 171 PQQAL-VIRDG-----EKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLT 224
Query: 419 GEAVPVLK--EINS--PVIGGTINLHGVLHIQATK------VGSDAVLSQIISLVETAQM 468
GE+ P + E +S P+ I ++ T G V+ +I +L ++
Sbjct: 225 GESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEV 284
Query: 469 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSI 528
+ PI + I + A+F + +++ ++ Y WL A++F I
Sbjct: 285 GRTPIAIEIEHFIHIITGV----AVFLGVSFFILSLILGY--SWLE--------AVIFLI 330
Query: 529 SVVVIACPCALGLATPTAVMVATGVG-ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQG 587
++V P L LAT T + T A L+K +A+E + DKTGTLTQ
Sbjct: 331 GIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQN 389
Query: 588 RATV 591
R TV
Sbjct: 390 RMTV 393
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 53/73 (72%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ + GMTCA+C +S+EG + L+GV + SV+L + A V+++P ++ E+++ AIED GF
Sbjct: 126 IAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGF 185
Query: 110 EAEILAESSTSGP 122
EA +++ES ++ P
Sbjct: 186 EASVVSESCSTNP 198
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 42 GDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIK 101
G + +Q+ + GM C +C ++E + L GV V+L A V +DP ++
Sbjct: 16 GSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQ 75
Query: 102 NAIE---DAGFEAEILAESSTSGP----------------KPQGTIVGQY-TIGGMTCAA 141
AIE F+ + + SG + QGT I GMTCA+
Sbjct: 76 RAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCAS 135
Query: 142 CVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSL 182
CV+S+EG++S +GV+Q G VL++P +S L
Sbjct: 136 CVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEEL 176
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 117 SSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEA 176
S T G + + Q I GM C +CV ++E + GV+ + + +V +DP
Sbjct: 9 SETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSC 68
Query: 177 LSSRSLVDGIAGRSNGKFQIRV 198
S +L I G F++ +
Sbjct: 69 TSPVALQRAIEALPPGNFKVSL 90
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 60/201 (29%)
Query: 723 GVMGIADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGI--------QD 771
G++ + DP + A V + +LK G+R +MVTGD+ TA A+A +GI +D
Sbjct: 597 GLVSMIDPPR---ATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVED 653
Query: 772 VMA-------------------------DVMPAGKADAVR-------------------- 786
+ A D+ P+ +A+R
Sbjct: 654 IAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVE 713
Query: 787 SFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAID 845
S Q+ G+IVA+ GDG+NDSPAL AD+G+A+G AG+D A AAD +L+ ++ ++ ++
Sbjct: 714 SCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVE 773
Query: 846 LSRKTFARIRLNYIFAMAYNV 866
R F ++ + + + N+
Sbjct: 774 QGRLIFDNLKKSIAYTLTKNI 794
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 328 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQS 387
A+++ FG Y E K+++ I L P A V++D ++ +I+A +
Sbjct: 148 AVVVVTGCFGYYQEF----KSTNIIASFKNLVPQQAT-VIRDG-----DKFQINADQLVV 197
Query: 388 GDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLK----------EINSPVIGGT 436
GD +++ G ++PAD I+ V+ S +TGE+ P + E + T
Sbjct: 198 GDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFST 257
Query: 437 INLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTW 496
+ L G G ++ +I SL + K PI + FV I+ LA+
Sbjct: 258 MCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEH----FVDIIAGLAILFG 313
Query: 497 LCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG-A 555
+++ + Y F+ A++F +++VV P L LAT T + T A
Sbjct: 314 ATFFIVAMCIGY----------TFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLA 362
Query: 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVT 592
+ ++K +A+E + DKTGTLTQ R TV+
Sbjct: 363 SKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVS 399
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 56/207 (27%)
Query: 719 DNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-------- 768
DNL +G++ + DP + V G++ +MVTGD+ TA A+A+ +G
Sbjct: 550 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 609
Query: 769 IQDVMA---------------------------------DVM------------PAGKAD 783
++D+ A D++ P K
Sbjct: 610 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 669
Query: 784 AVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVII 842
V Q+ G+IVA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD +L+ ++ ++
Sbjct: 670 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 729
Query: 843 AIDLSRKTFARIRLNYIFAMAYNVIAI 869
++ R F ++ + + + N+ I
Sbjct: 730 GVEEGRLIFDNLKKSIAYTLTSNIPEI 756
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 37/277 (13%)
Query: 327 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQ 386
SA++I F Y E K+S ++ + P AL++ E+ I+A +
Sbjct: 106 SAVVIITGCFSYYQE----AKSSKIMESFKNMVPQQALVIRNG------EKMSINAEEVV 155
Query: 387 SGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLKEIN----SPVIGGTINLHG 441
GD ++V G ++PAD I+ V+ S +TGE+ P + + +P+ I
Sbjct: 156 VGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFS 215
Query: 442 VLHIQATK------VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFT 495
++ T G V+ +I +L + + PI + F+ I+ +A+F
Sbjct: 216 TNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEH----FIHIITGVAVFL 271
Query: 496 WLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG- 554
+ +++ ++ Y WL A++F I ++V P L LAT T + T
Sbjct: 272 GVSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRM 320
Query: 555 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 591
A L+K +A+E + KTGTLTQ R TV
Sbjct: 321 ARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTV 357
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 56/207 (27%)
Query: 719 DNL--IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG-------- 768
DNL +G++ + DP + V G++ +MVTGD+ TA A+A+ +G
Sbjct: 556 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 615
Query: 769 IQDVMA---------------------------------DVM------------PAGKAD 783
++D+ A D++ P K
Sbjct: 616 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 675
Query: 784 AVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVII 842
V Q+ G+IVA+ GDG+NDSPA AD+G+A+G AG+D++ +AAD +L+ ++ ++
Sbjct: 676 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 735
Query: 843 AIDLSRKTFARIRLNYIFAMAYNVIAI 869
++ R F ++ + + + N+ I
Sbjct: 736 GVEEGRLIFDNLKKSIAYTLTSNIPEI 762
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 327 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQ 386
SA++I F Y E K+S ++ + P AL++ E+ I+A +
Sbjct: 112 SAVVIITGCFSYYQE----AKSSKIMESFKNMVPQQALVIRNG------EKMSINAEEVV 161
Query: 387 SGDTLKVLPGTKLPAD-GIVVWGTSYVNESMVTGEAVPVLKEIN----SPVIGGTINLHG 441
GD ++V G ++PAD I+ V+ S +TGE+ P + + +P+ I
Sbjct: 162 VGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFS 221
Query: 442 VLHIQATK------VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFT 495
++ T G V+ +I +L + + PI + F+ I+ +A+F
Sbjct: 222 TNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEH----FIHIITGVAVFL 277
Query: 496 WLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG- 554
+ +++ ++ Y WL A++F I ++V P L LAT T + T
Sbjct: 278 GVSFFILSLILEY--TWLE--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRM 326
Query: 555 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATV 591
A L+K +A+E + DKTGTLTQ R TV
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV 363
>pdb|2KOY|A Chain A, Structure Of The E1064a Mutant Of The N-Domain Of Wilson
Disease Associated Protein
Length = 141
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 30/137 (21%)
Query: 604 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFS 663
+ L +V +A ASSEHPL AV +Y KE G+ L +DF
Sbjct: 24 KVLAVVGTAAASSEHPLGVAVTKYC-------------------KEELGTETLGYCTDFQ 64
Query: 664 ALPGRGIQCFISGKQ-----------VLVGNRKLLNESGITIPDHVESFVVELEESARTG 712
A+PG GI C +S + VL+GNR+ L +G+TI V + + E +T
Sbjct: 65 AVPGCGIGCKVSNVEGILAAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTA 124
Query: 713 ILVAYDDNLIGVMGIAD 729
ILVA D L G++ IAD
Sbjct: 125 ILVAIDGVLCGMIAIAD 141
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L ++V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKIS 165
G+ ++ E + ++ I GMTCAAC N +E L+ +GV +
Sbjct: 66 KLGY--HVVTEKA------------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL 111
Query: 166 GELEVLFDPEALSSRSLVDGI 186
+ V ++P+ S L + +
Sbjct: 112 ETVTVEYNPKEASVSDLKEAV 132
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 135 LGYKLKLKGEQDS 147
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
R + + V GMTC+AC+N++ L LKGV K ++L+ N+ V +D ++ D IK IE
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIE 60
Query: 106 DAGFEAEILAES 117
D GF+ EIL +S
Sbjct: 61 DCGFDCEILRDS 72
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPE 175
+ GMTC+AC N++ L KGV + ++ E +V +D E
Sbjct: 8 VHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNE 49
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
R + + V GMTC+AC+N++ L LKGV K ++L+ N+ V +D ++ D IK IE
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIE 60
Query: 106 DAGFEAEILAES 117
D GF+ EIL +S
Sbjct: 61 DCGFDCEILRDS 72
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPE 175
+ GMTC+AC N++ L KGV + ++ E +V +D E
Sbjct: 8 VHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNE 49
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L +V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKIS 165
G+ ++ E + ++ I GMTCAAC N +E L+ +GV +
Sbjct: 66 KLGY--HVVTEKA------------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL 111
Query: 166 GELEVLFDPEALSSRSLVDGI 186
+ V ++P+ S L + +
Sbjct: 112 ETVTVEYNPKEASVSDLKEAV 132
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 135 LGYKLKLKGEQDS 147
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 41 IGDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDI 100
+GDG+ +++ V GMTCA+C + +E +L +G+ SVAL NKA + +DP+++ DI
Sbjct: 1 MGDGV--LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDI 58
Query: 101 KNAIEDAGFEAEIL 114
+ IE GFEA ++
Sbjct: 59 IHTIESLGFEASLV 72
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDG 185
G V + + GMTCA+CV+ +E L+ +G+ + + + +DPE + R ++
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 186 I 186
I
Sbjct: 62 I 62
>pdb|2ARF|A Chain A, Solution Structure Of The Wilson Atpase N-Domain In The
Presence Of Atp
Length = 165
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 67/161 (41%), Gaps = 54/161 (33%)
Query: 604 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFS 663
+ L +V +AEASSEHPL AV +Y KE G+ L +DF
Sbjct: 24 KVLAVVGTAEASSEHPLGVAVTKYC-------------------KEELGTETLGYCTDFQ 64
Query: 664 ALPGRGIQCFISGKQ-----------------------------------VLVGNRKLLN 688
A+PG GI C +S + VL+GNR+ L
Sbjct: 65 AVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLR 124
Query: 689 ESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIAD 729
+G+TI V + + E +T ILVA D L G++ IAD
Sbjct: 125 RNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 165
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 41 IGDGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDI 100
+GDG+ +++ V GMTCA+C + +E +L +G+ SVAL NKA + +DP+++ DI
Sbjct: 1 MGDGV--LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDI 58
Query: 101 KNAIEDAGFEAEIL 114
+ IE GFE ++
Sbjct: 59 IHTIESLGFEPSLV 72
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDG 185
G V + + GMTCA+CV+ +E L+ +G+ + + + +DPE + R ++
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 186 I 186
I
Sbjct: 62 I 62
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 74/199 (37%)
Query: 586 QGRATVTTAKVFTKMDR---GEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPD 642
G V KV T+ +R + L +V +AE++SEHPL A+ +Y +
Sbjct: 5 HGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCK------------- 51
Query: 643 GQSHSKESTGSGWLLDVSDFSALPGRG-----------------------------IQCF 673
Q E+ G+ DF +PG G +Q
Sbjct: 52 -QELDTETLGT-----CIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQID 105
Query: 674 ISGKQ-----------------------VLVGNRKLLNESGITIPDHVESFVVELEESAR 710
S +Q VL+GNR+ + +G+ I + V F+ E E R
Sbjct: 106 ASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVNDFMTEHERKGR 165
Query: 711 TGILVAYDDNLIGVMGIAD 729
T +LVA DD L G++ IAD
Sbjct: 166 TAVLVAVDDELCGLIAIAD 184
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC +C++++EG + L+GV + V+L +A +V+ P L+ E++K IE
Sbjct: 5 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 64
Query: 108 GFEA 111
GF A
Sbjct: 65 GFPA 68
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSL 182
G +V + + GMTC +C +++EG + +GV++ + + E +++ P +S +
Sbjct: 1 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 57
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC +C++++EG + L+GV + V+L +A +V+ P L+ E++K IE
Sbjct: 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70
Query: 108 GFEA 111
GF A
Sbjct: 71 GFPA 74
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 126 GTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSL 182
G +V + + GMTC +C +++EG + +GV++ + + E +++ P +S +
Sbjct: 7 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 63
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ + GMTC +C S+EG + GV V+L + V +DP L E ++ AIED GF
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66
Query: 110 EAEI 113
+A +
Sbjct: 67 DATL 70
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
I GMTC +CV S+EG++S GV+ R + V +DP S +L I
Sbjct: 9 IDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAI 61
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
G+ + + V GMTC +C ++E + + GV V+L + A +++DP L + ++ A
Sbjct: 2 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 61
Query: 104 IEDAGFEAEI 113
I+D GF+A I
Sbjct: 62 IDDMGFDAVI 71
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 133 TIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
++ GMTC +CV ++E + GV + +++DP+ + ++L + I
Sbjct: 9 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 62
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
G+ + + V GMTC +C ++E + + GV V+L + A +++DP L + ++ A
Sbjct: 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 65
Query: 104 IEDAGFEAEI 113
I+D GF+A I
Sbjct: 66 IDDMGFDAVI 75
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 133 TIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
++ GMTC +CV ++E + GV + +++DP+ + ++L + I
Sbjct: 13 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
++ Q+ V GM CAAC++S+E AL LKGVA+ASV + + V +DP V + I+ I
Sbjct: 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 105 EDAGF 109
G+
Sbjct: 62 AALGY 66
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAG 188
Q +GGM CAAC +S+E L KGV + +G L V +DP+ +S ++ + IA
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
M + + V GM+C C +VE ++ L GV+ V L K DV FD D V +DI +AI
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
Query: 105 EDAGFE 110
ED G++
Sbjct: 61 EDQGYD 66
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
+ GM+C CV +VE + GV + +G+++V FD + +S + + D I
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
M + + V GM+C C +VE ++ L GV+ V L K DV FD D V +DI +AI
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
Query: 105 EDAGFE 110
ED G++
Sbjct: 61 EDQGYD 66
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
+ GM+C CV +VE + GV + +G+++V FD + +S + + D I
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
++ Q+ V GM C +C +EG+L LKGVA+ASV + + V +DP V + I+ I
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 66
Query: 105 EDAGFEAEILAESSTS 120
G+ LAE +S
Sbjct: 67 AALGY---TLAEPKSS 79
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAG 188
Q +GGM C +C +EG L KGV + +G L V +DP+ +S ++ + IA
Sbjct: 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAI 104
++ Q+ V GM C +C +EG+L LKGVA+ASV + + V +DP V + I+ I
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 105 EDAGFEAEILAESSTS 120
G+ LAE +S
Sbjct: 62 AALGY---TLAEPKSS 74
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAG 188
Q +GGM C +C +EG L KGV + +G L V +DP+ +S ++ + IA
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+ + V GMTC +C ++E + + GV V+L + A +++DP L + ++ AI+D
Sbjct: 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63
Query: 108 GFEAEI 113
GF+A I
Sbjct: 64 GFDAVI 69
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 133 TIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
++ GMTC +CV ++E + GV + +++DP+ + ++L + I
Sbjct: 7 SVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 601 DRGEFLTLVASAEASSEHPLAKAVVEYA-RHFHFFDDPSLNPDGQSHSKESTGSGWLLDV 659
D E L L A AE SEHP+A+A+V+ A H +P
Sbjct: 14 DERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPE--------------------- 52
Query: 660 SDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDD 719
+ G G+ +LVGN++L + G+ + + VE + +LE A+T ++VA +
Sbjct: 53 -KVEVIAGEGVVA----DGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNG 107
Query: 720 NLIGVMGIAD 729
+ G++ ++D
Sbjct: 108 RVEGIIAVSD 117
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 43 DGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKN 102
+ M ++ + V GM+C C N++E ++ L GV + V L + +V D +V +DI
Sbjct: 2 NAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVA 61
Query: 103 AIEDAGFEAE 112
IED G++ +
Sbjct: 62 VIEDQGYDVQ 71
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLV 183
+ GM+C CVN++E + GV Q + G +EV D ++ + +V
Sbjct: 11 VEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIV 60
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 64 LGYKLKLKGEQDS 76
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 130 GQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
++ I GMTCAAC N +E L+ +GV + + V ++P+ S L + +
Sbjct: 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIED 106
+ + + GMTCAAC+N +E L ++GVA A V V ++P D+K A++
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 107 AGFEAEILAESST 119
G++ ++ E +
Sbjct: 64 LGYKLKLKGEQDS 76
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 130 GQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
++ I GMTCAAC N +E L+ +GV + + V ++P+ S L + +
Sbjct: 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ I + V+GMTCAAC+ +E L + GV A+V L +V++DP I+ IE
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 106 DAGFEAEI 113
G+ I
Sbjct: 66 KLGYHVVI 73
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186
+ GMTCAAC +E L GV + + + V++DP + ++ + I
Sbjct: 12 VSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKI 64
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain Of
Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
+ VTGMTCA+C ++E L +G+ VAL+ KA+V ++P +++ I I + GF
Sbjct: 7 IQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66
Query: 110 EAEIL 114
A ++
Sbjct: 67 GATVI 71
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEAL 177
+ GMTCA+CV ++E L +G+ ++G+ EV ++P +
Sbjct: 9 VTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVI 52
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
+ + + V GMTCAAC +V+ AL ++GV+K V + +A V FD + + A
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKA 60
Query: 104 IEDAGFEAEI 113
DAG+ + +
Sbjct: 61 TADAGYPSSV 70
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIA 187
+ GMTCAAC +V+ LS +GV + E V FD S + L A
Sbjct: 9 VPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATA 62
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNA 103
+ + + V GMTC+AC +V+ A+ ++GV+K V +A V FD + + A
Sbjct: 1 ATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKA 60
Query: 104 IEDAGFEAEI 113
DAG+ + +
Sbjct: 61 TADAGYPSSV 70
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM CAAC++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 63
Query: 108 GFEAEILAE 116
G+ A +L +
Sbjct: 64 GYHARVLKQ 72
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM CAAC++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 63
Query: 108 GFEAEIL 114
G+ A +L
Sbjct: 64 GYHARVL 70
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
+++ V GMTC C +V AL + GV K V+L + +A V D + + A+E+
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTAD---PKALVQAVEEE 58
Query: 108 GFEAEILA 115
G++AE+LA
Sbjct: 59 GYKAEVLA 66
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGF 109
V+GM CAAC+ VE A+ L GV + V K +V D D +++A++ AG+
Sbjct: 9 VSGMDCAACARKVENAVRQLAGVNQVQVLFATEK--LVVDADNDIRAQVESALQKAGY 64
>pdb|2PQ0|A Chain A, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2PQ0|B Chain B, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2QYH|A Chain A, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|B Chain B, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|C Chain C, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|D Chain D, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
Length = 258
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 770 QDVMADVMPAG--KADAVRSFQK----DGSIVAMVGDGINDSPALAAADVGMAIGAGTDI 823
DV DV+PAG KA+ +R + D V GDG+ND L+ G+A G +
Sbjct: 171 HDVSTDVLPAGGSKAEGIRXXIEKLGIDKKDVYAFGDGLNDIEXLSFVGTGVAXGNAHEE 230
Query: 824 AIEAADYV 831
AD+V
Sbjct: 231 VKRVADFV 238
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIE 105
+ GM C +C +++E L L+ V+ V+L A VV++ V E ++ AIE
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 132 YTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSN 191
+ I GM C +CV+++E LS + V + V+++ +++ SL I S
Sbjct: 7 FIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSP 66
Query: 192 GKFQIRV 198
G +++ +
Sbjct: 67 GLYRVSI 73
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
I + + GM C +C++S+E A+ + GV V +A V + + + + +A+E A
Sbjct: 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERA 62
Query: 108 GFEAEIL 114
G+ A +L
Sbjct: 63 GYHARVL 69
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108
+ V GM+C C +E A+ + GV K V L + KA V FD V+ +I AI + G
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 109 FEAEIL 114
++AE++
Sbjct: 63 YQAEVI 68
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 779 AGKADAVRSF-QKDGSIVAM---VGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMR 834
AGKA A+R F Q+ G +A VGDG ND LAAA +G+A A + E AD L
Sbjct: 322 AGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALR-EVADASLSH 380
Query: 835 NSLEDVIIAIDLSR 848
L+ V+ + ++R
Sbjct: 381 PYLDTVLFLLGVTR 394
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD--VMPAGKADAVR-S 787
V EA +VE L + G + V+++G ++ +E+G + MA+ + GK +R
Sbjct: 80 VSPEARELVETLREKGFKVVLISG-SFEEVLEPFKELG-DEFMANRAIFEDGKFQGIRLR 137
Query: 788 FQ---------KDGSIVAMVGDGINDSPALAAADVGMAIG---AGTDIAIE 826
F+ +DG I+AM GDG D+ AD+G+A+G G D+ ++
Sbjct: 138 FRDKGEFLKRFRDGFILAM-GDGYADAKMFERADMGIAVGREIPGADLLVK 187
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 795 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845
V +GDG ND + A G+A G + +AADY+ + N + V AI+
Sbjct: 216 VIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 795 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845
V +GDG ND + A +G+A+G + +AADY+ + N + V AI+
Sbjct: 216 VIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|3OBF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator,
Iclr Family; Targeted Domain 129...302
pdb|3OBF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator,
Iclr Family; Targeted Domain 129...302
Length = 176
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 659 VSDFSALPGRGIQCFISGKQVLVGN------RKLLNESGITIP----DHVESFVVELEES 708
V + L R + S QV + + R+LL IT+ D VE++++ L+ES
Sbjct: 46 VKHLAPLGARYNEALSSSVQVFLASENEDRVRQLLRSGSITLTGVDEDAVEAYLLRLKES 105
Query: 709 ARTGILVAYDDNLIGVMGIADPV 731
G V + + I +G+A PV
Sbjct: 106 XERGWAVNFGETSIEEVGVASPV 128
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYV 831
S + GDG ND P L AA +G+A+G ++ AD+V
Sbjct: 211 SEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFV 249
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 779 AGKADAVRSFQKDGSI----VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMR 834
A K A++ K +I A VGD +ND L AA G+A G + AD V +
Sbjct: 215 ASKGQALKRLAKQLNIPLEETAAVGDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLT 274
Query: 835 N 835
N
Sbjct: 275 N 275
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108
+ +TGMTC +C+ V+ AL + GV A V+ + A + P D + A+ G
Sbjct: 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDA-LTAAVAGLG 61
Query: 109 FEAEI 113
++A +
Sbjct: 62 YKATL 66
>pdb|3QYG|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 506 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 561
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 562 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 613
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 614 ASSEHP 619
EHP
Sbjct: 177 GKGEHP 182
>pdb|3QXE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QZ5|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 506 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 561
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 562 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 613
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 614 ASSEHP 619
EHP
Sbjct: 177 GKGEHP 182
>pdb|3QZ9|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 219
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 506 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 561
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYEHWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 562 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 613
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 614 ASSEHP 619
EHP
Sbjct: 177 GKGEHP 182
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDA 107
IQ+ V M C +C+ +V A+ A V L K + + +E ++ AI A
Sbjct: 2 IQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTIT---SALGEEQLRTAIASA 58
Query: 108 GFEAE 112
G E E
Sbjct: 59 GHEVE 63
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 83 QNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL-AESSTSGPKPQGTIVGQYTIGGMTCAA 141
Q +V+F L+K+ D+K+AIE + AE + ++ +S + V + C
Sbjct: 379 QVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVF 438
Query: 142 CVNSVEGILSNFKG 155
+ + G +S F G
Sbjct: 439 MLICIIGTVSVFAG 452
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron
Images
pdb|1OED|D Chain D, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 227
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 83 QNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL-AESSTSGPKPQGTIVGQYTIGGMTCAA 141
Q +V+F L+K+ D+K+AIE + AE + ++ +S + V + C
Sbjct: 145 QVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVF 204
Query: 142 CVNSVEGILSNFKG 155
+ + G +S F G
Sbjct: 205 MLICIIGTVSVFAG 218
>pdb|3QYH|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida
Length = 219
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 506 GAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLA----TPTAVMVATGVGANNGVLI 561
G Y E WL VF + V+ A A G A T T V+ V +G+L
Sbjct: 66 GTYYELWL------HVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIV---DGLLS 116
Query: 562 KGGDAL-ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-------MDRGEFLTLVASAE 613
G A E + ++ + DK L + T +T+ +D G F+T +A
Sbjct: 117 TGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAH 176
Query: 614 ASSEHP 619
EHP
Sbjct: 177 GKGEHP 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,310,123
Number of Sequences: 62578
Number of extensions: 1048955
Number of successful extensions: 2944
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2743
Number of HSP's gapped (non-prelim): 158
length of query: 924
length of database: 14,973,337
effective HSP length: 108
effective length of query: 816
effective length of database: 8,214,913
effective search space: 6703369008
effective search space used: 6703369008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)