Query 002427
Match_columns 924
No_of_seqs 532 out of 3541
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 23:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 2E-153 4E-158 1295.2 69.5 831 47-915 70-907 (951)
2 COG2217 ZntA Cation transport 100.0 2E-144 5E-149 1256.2 80.6 706 129-910 3-710 (713)
3 PRK10671 copA copper exporting 100.0 8E-128 2E-132 1180.4 91.9 806 46-913 3-833 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 1E-115 3E-120 1050.2 81.4 687 127-911 52-740 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 2E-103 4E-108 921.1 69.1 561 272-889 1-562 (562)
6 TIGR01512 ATPase-IB2_Cd heavy 100.0 2.8E-95 6E-100 849.8 63.2 533 291-908 1-535 (536)
7 TIGR01525 ATPase-IB_hvy heavy 100.0 1E-94 2.2E-99 850.8 68.1 549 291-907 1-556 (556)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 4.7E-93 1E-97 857.9 63.4 544 323-905 55-649 (755)
9 PRK14010 potassium-transportin 100.0 8.4E-91 1.8E-95 808.8 63.9 496 332-867 74-578 (673)
10 PRK01122 potassium-transportin 100.0 7.8E-90 1.7E-94 801.4 68.7 517 327-881 69-600 (679)
11 PRK10517 magnesium-transportin 100.0 2.6E-88 5.7E-93 825.3 64.0 515 323-870 122-715 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 5.6E-88 1.2E-92 823.7 65.6 512 326-870 90-680 (867)
13 TIGR01497 kdpB K+-transporting 100.0 5.1E-87 1.1E-91 775.7 65.7 521 322-879 63-599 (675)
14 PRK15122 magnesium-transportin 100.0 1.6E-87 3.6E-92 819.9 64.0 515 322-869 110-714 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 5.3E-85 1.2E-89 807.6 64.5 563 322-908 127-782 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 4.5E-84 9.8E-89 794.7 60.6 535 336-908 92-731 (884)
17 KOG0204 Calcium transporting A 100.0 3.4E-85 7.3E-90 729.0 38.3 604 273-910 142-854 (1034)
18 KOG0202 Ca2+ transporting ATPa 100.0 3.5E-84 7.6E-89 722.3 44.2 530 326-870 80-756 (972)
19 COG0474 MgtA Cation transport 100.0 1.9E-82 4.2E-87 776.4 48.7 543 334-908 113-753 (917)
20 TIGR01494 ATPase_P-type ATPase 100.0 3.3E-81 7.1E-86 730.1 53.1 476 331-874 3-483 (499)
21 TIGR01106 ATPase-IIC_X-K sodiu 100.0 6.1E-80 1.3E-84 764.2 65.0 517 323-872 104-764 (997)
22 TIGR01523 ATPase-IID_K-Na pota 100.0 1.7E-79 3.6E-84 757.1 65.3 524 327-872 84-826 (1053)
23 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2E-78 4.2E-83 746.2 64.2 539 322-872 35-710 (917)
24 TIGR01657 P-ATPase-V P-type AT 100.0 2.3E-77 5E-82 746.1 56.6 559 322-908 191-910 (1054)
25 COG2216 KdpB High-affinity K+ 100.0 1.5E-67 3.3E-72 558.3 39.6 490 328-851 70-568 (681)
26 KOG0203 Na+/K+ ATPase, alpha s 100.0 8.5E-71 1.8E-75 613.2 15.6 511 327-870 129-784 (1019)
27 TIGR01652 ATPase-Plipid phosph 100.0 2.3E-66 5E-71 649.7 51.0 568 320-907 50-883 (1057)
28 KOG0208 Cation transport ATPas 100.0 1.1E-66 2.4E-71 589.0 42.6 540 303-870 198-928 (1140)
29 KOG0205 Plasma membrane H+-tra 100.0 2.4E-65 5.3E-70 552.7 32.0 511 318-866 92-658 (942)
30 PLN03190 aminophospholipid tra 100.0 2.1E-60 4.6E-65 588.4 57.6 545 320-881 136-962 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 1.7E-54 3.7E-59 479.2 26.7 447 350-821 240-835 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 1.2E-50 2.6E-55 440.8 36.6 507 321-860 129-849 (1051)
33 KOG0206 P-type ATPase [General 100.0 1.1E-47 2.5E-52 457.9 32.0 552 303-872 61-874 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 2.1E-34 4.6E-39 303.0 22.7 223 329-569 1-230 (230)
35 PF00702 Hydrolase: haloacid d 100.0 2.9E-30 6.4E-35 268.8 12.8 209 573-812 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.7 9.9E-16 2.1E-20 135.4 13.3 124 717-843 17-145 (152)
37 KOG0207 Cation transport ATPas 99.5 2.7E-13 5.8E-18 156.6 12.1 138 53-200 1-138 (951)
38 PF00403 HMA: Heavy-metal-asso 99.1 2.3E-10 5E-15 93.0 7.1 60 131-190 1-60 (62)
39 TIGR02137 HSK-PSP phosphoserin 99.1 5.8E-10 1.3E-14 113.8 11.1 116 730-847 68-198 (203)
40 PF00403 HMA: Heavy-metal-asso 99.0 1.2E-09 2.6E-14 88.8 8.7 62 49-110 1-62 (62)
41 PRK11133 serB phosphoserine ph 99.0 1.7E-09 3.7E-14 117.9 12.3 115 730-845 181-316 (322)
42 TIGR01670 YrbI-phosphatas 3-de 99.0 6.3E-09 1.4E-13 101.6 12.9 120 718-845 22-149 (154)
43 COG2608 CopZ Copper chaperone 98.9 3.9E-09 8.5E-14 87.7 8.7 68 45-112 1-68 (71)
44 COG2608 CopZ Copper chaperone 98.9 5.4E-09 1.2E-13 86.9 7.5 66 129-197 3-68 (71)
45 TIGR00338 serB phosphoserine p 98.9 7.6E-09 1.6E-13 107.9 10.4 113 730-843 85-218 (219)
46 TIGR02726 phenyl_P_delta pheny 98.9 1.3E-08 2.8E-13 100.1 10.4 100 737-836 41-142 (169)
47 COG1778 Low specificity phosph 98.8 2.8E-08 6.1E-13 92.1 10.2 132 715-854 26-165 (170)
48 PRK09484 3-deoxy-D-manno-octul 98.8 3.9E-08 8.4E-13 99.1 12.1 138 709-848 20-172 (183)
49 PRK01158 phosphoglycolate phos 98.8 5.1E-08 1.1E-12 102.5 12.7 131 711-845 4-226 (230)
50 TIGR01487 SPP-like sucrose-pho 98.8 3.8E-08 8.2E-13 102.3 11.6 129 712-843 3-214 (215)
51 PRK10513 sugar phosphate phosp 98.7 8.4E-08 1.8E-12 103.5 12.9 132 711-845 4-265 (270)
52 PRK15126 thiamin pyrimidine py 98.7 9.3E-08 2E-12 103.3 11.8 132 711-845 3-259 (272)
53 COG0560 SerB Phosphoserine pho 98.7 8.1E-08 1.8E-12 98.5 10.6 103 729-832 76-199 (212)
54 PRK13582 thrH phosphoserine ph 98.7 8.6E-08 1.9E-12 98.8 11.0 113 730-845 68-196 (205)
55 PRK10976 putative hydrolase; P 98.7 1.5E-07 3.3E-12 101.2 12.6 132 711-845 3-261 (266)
56 COG0561 Cof Predicted hydrolas 98.6 2.1E-07 4.6E-12 100.0 12.6 133 711-846 4-259 (264)
57 TIGR01482 SPP-subfamily Sucros 98.6 2.7E-07 5.8E-12 96.7 11.3 120 717-839 5-212 (225)
58 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 2.4E-07 5.2E-12 95.1 9.7 100 730-829 80-200 (201)
59 PRK10530 pyridoxal phosphate ( 98.5 1.1E-06 2.3E-11 95.0 14.3 52 794-845 217-268 (272)
60 PF08282 Hydrolase_3: haloacid 98.5 5.3E-07 1.2E-11 95.9 9.6 117 728-844 13-254 (254)
61 KOG1615 Phosphoserine phosphat 98.4 3.3E-07 7.2E-12 87.9 6.5 89 730-818 88-199 (227)
62 PLN02887 hydrolase family prot 98.4 1.2E-06 2.7E-11 102.3 12.6 52 794-845 525-576 (580)
63 TIGR00099 Cof-subfamily Cof su 98.4 9.8E-07 2.1E-11 94.4 10.9 51 793-843 205-255 (256)
64 PLN02954 phosphoserine phospha 98.4 1.9E-06 4.1E-11 90.2 12.6 112 730-843 84-222 (224)
65 TIGR03333 salvage_mtnX 2-hydro 98.3 4.7E-06 1E-10 86.4 11.6 117 729-845 69-209 (214)
66 PF12710 HAD: haloacid dehalog 98.2 2.3E-06 4.9E-11 87.1 7.7 77 733-809 92-192 (192)
67 TIGR01488 HAD-SF-IB Haloacid D 98.2 2.4E-06 5.1E-11 85.8 7.1 81 731-811 74-177 (177)
68 TIGR01489 DKMTPPase-SF 2,3-dik 98.2 4.4E-06 9.5E-11 84.7 8.6 88 729-816 71-186 (188)
69 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 5.9E-06 1.3E-10 84.9 9.4 92 728-819 85-198 (202)
70 PRK13222 phosphoglycolate phos 98.2 9.6E-06 2.1E-10 84.9 10.6 117 729-847 92-224 (226)
71 PRK09552 mtnX 2-hydroxy-3-keto 98.1 9.6E-06 2.1E-10 84.5 9.7 112 730-844 74-212 (219)
72 COG0546 Gph Predicted phosphat 98.1 1.5E-05 3.2E-10 83.0 10.5 116 728-845 87-218 (220)
73 PRK03669 mannosyl-3-phosphogly 98.1 3.3E-05 7.2E-10 83.2 12.5 59 709-770 6-64 (271)
74 TIGR01454 AHBA_synth_RP 3-amin 98.0 3.2E-05 6.9E-10 79.7 10.5 113 730-844 75-203 (205)
75 TIGR01486 HAD-SF-IIB-MPGP mann 97.9 6.5E-05 1.4E-09 80.3 11.3 52 794-845 196-253 (256)
76 PRK08238 hypothetical protein; 97.9 0.00013 2.8E-09 84.0 14.4 93 730-823 72-170 (479)
77 PRK13288 pyrophosphatase PpaX; 97.9 5.8E-05 1.3E-09 78.3 10.3 113 730-844 82-210 (214)
78 PRK11033 zntA zinc/cadmium/mer 97.8 0.013 2.9E-07 72.0 30.7 68 43-112 50-117 (741)
79 COG2217 ZntA Cation transport 97.8 3.9E-05 8.6E-10 91.5 7.9 67 46-113 2-69 (713)
80 TIGR02471 sucr_syn_bact_C sucr 97.8 0.00011 2.5E-09 77.4 10.5 66 780-845 159-232 (236)
81 cd01427 HAD_like Haloacid deha 97.8 8.2E-05 1.8E-09 70.5 8.5 90 727-816 21-138 (139)
82 PRK13223 phosphoglycolate phos 97.8 0.00011 2.5E-09 79.0 10.1 116 728-845 99-230 (272)
83 PRK10187 trehalose-6-phosphate 97.7 0.00017 3.8E-09 77.1 10.9 130 710-845 14-241 (266)
84 PRK13225 phosphoglycolate phos 97.6 0.00032 7E-09 75.3 11.3 113 730-844 142-267 (273)
85 TIGR01485 SPP_plant-cyano sucr 97.6 0.00039 8.4E-09 74.0 11.7 117 713-829 4-221 (249)
86 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00018 4E-09 74.4 9.0 111 730-842 85-211 (213)
87 PRK00192 mannosyl-3-phosphogly 97.6 0.00016 3.4E-09 78.1 8.8 106 740-845 142-267 (273)
88 PRK06769 hypothetical protein; 97.6 0.00022 4.8E-09 71.1 8.5 107 709-815 3-133 (173)
89 PRK10826 2-deoxyglucose-6-phos 97.5 0.00039 8.4E-09 72.6 9.3 111 729-842 91-217 (222)
90 TIGR01544 HAD-SF-IE haloacid d 97.3 0.002 4.3E-08 68.3 12.1 116 729-844 120-273 (277)
91 PRK13226 phosphoglycolate phos 97.3 0.00096 2.1E-08 69.9 9.9 113 730-844 95-224 (229)
92 TIGR00003 copper ion binding p 97.3 0.0017 3.7E-08 51.8 8.6 65 46-110 2-66 (68)
93 TIGR01422 phosphonatase phosph 97.3 0.0012 2.6E-08 70.5 9.7 84 730-814 99-196 (253)
94 COG2179 Predicted hydrolase of 97.2 0.0023 5E-08 60.9 9.9 108 702-812 20-131 (175)
95 PRK13478 phosphonoacetaldehyde 97.2 0.0022 4.8E-08 69.0 10.9 114 730-845 101-255 (267)
96 PLN02382 probable sucrose-phos 97.1 0.0027 5.9E-08 72.2 11.3 65 780-844 175-256 (413)
97 PRK12702 mannosyl-3-phosphogly 97.1 0.0045 9.7E-08 65.5 11.9 57 711-770 2-58 (302)
98 TIGR01545 YfhB_g-proteo haloac 97.1 0.0029 6.2E-08 65.2 10.1 90 730-819 94-202 (210)
99 PRK11590 hypothetical protein; 97.1 0.0038 8.2E-08 64.5 11.1 91 730-820 95-204 (211)
100 TIGR03351 PhnX-like phosphonat 97.1 0.0025 5.4E-08 66.4 9.5 113 729-844 86-219 (220)
101 PRK06698 bifunctional 5'-methy 97.0 0.0025 5.4E-08 74.2 10.2 117 730-848 330-457 (459)
102 TIGR01668 YqeG_hyp_ppase HAD s 97.0 0.0038 8.1E-08 62.1 10.0 107 705-814 20-131 (170)
103 PRK11009 aphA acid phosphatase 97.0 0.0022 4.7E-08 66.9 8.4 81 730-814 114-206 (237)
104 PRK14501 putative bifunctional 97.0 0.0046 1E-07 76.2 12.7 142 698-845 480-721 (726)
105 TIGR01548 HAD-SF-IA-hyp1 haloa 97.0 0.0017 3.8E-08 66.3 7.2 84 728-811 104-197 (197)
106 TIGR00003 copper ion binding p 97.0 0.0027 5.9E-08 50.5 7.0 61 130-190 4-64 (68)
107 TIGR02461 osmo_MPG_phos mannos 97.0 0.0057 1.2E-07 63.8 11.1 51 715-769 4-54 (225)
108 PRK14502 bifunctional mannosyl 97.0 0.004 8.6E-08 73.2 10.7 57 710-769 416-472 (694)
109 TIGR01662 HAD-SF-IIIA HAD-supe 96.9 0.0058 1.3E-07 57.9 10.1 103 712-814 2-126 (132)
110 PLN03243 haloacid dehalogenase 96.9 0.0044 9.4E-08 66.1 10.0 110 730-841 109-231 (260)
111 KOG4383 Uncharacterized conser 96.9 0.0052 1.1E-07 69.7 10.7 147 720-866 816-1098(1354)
112 PLN02770 haloacid dehalogenase 96.9 0.0045 9.7E-08 65.7 10.0 108 730-839 108-230 (248)
113 TIGR01672 AphA HAD superfamily 96.9 0.0027 5.9E-08 66.2 7.5 81 730-814 114-206 (237)
114 PLN02575 haloacid dehalogenase 96.8 0.0074 1.6E-07 67.1 10.8 110 730-841 216-338 (381)
115 TIGR01484 HAD-SF-IIB HAD-super 96.7 0.0073 1.6E-07 62.0 9.7 53 713-769 2-56 (204)
116 TIGR02253 CTE7 HAD superfamily 96.7 0.0048 1E-07 64.2 8.4 88 730-818 94-195 (221)
117 PRK08942 D,D-heptose 1,7-bisph 96.7 0.011 2.4E-07 59.5 10.3 113 731-845 30-177 (181)
118 PRK11587 putative phosphatase; 96.7 0.0088 1.9E-07 62.2 9.6 108 730-840 83-203 (218)
119 PTZ00174 phosphomannomutase; P 96.6 0.013 2.8E-07 62.2 11.0 53 710-765 5-57 (247)
120 TIGR01428 HAD_type_II 2-haloal 96.6 0.0054 1.2E-07 62.6 7.5 85 730-814 92-187 (198)
121 KOG4656 Copper chaperone for s 96.6 0.0053 1.1E-07 59.7 6.6 59 128-190 7-65 (247)
122 COG4030 Uncharacterized protei 96.5 0.013 2.8E-07 58.2 9.2 116 730-846 83-263 (315)
123 PRK14988 GMP/IMP nucleotidase; 96.5 0.0054 1.2E-07 64.0 7.2 90 730-819 93-195 (224)
124 PLN02957 copper, zinc superoxi 96.5 0.0093 2E-07 62.5 8.7 66 46-115 6-71 (238)
125 TIGR02254 YjjG/YfnB HAD superf 96.4 0.006 1.3E-07 63.6 6.8 111 730-843 97-223 (224)
126 COG4359 Uncharacterized conser 96.4 0.01 2.2E-07 57.2 7.4 87 730-816 73-183 (220)
127 PLN02957 copper, zinc superoxi 96.4 0.0086 1.9E-07 62.7 7.6 65 128-199 6-70 (238)
128 PHA02530 pseT polynucleotide k 96.4 0.0093 2E-07 65.3 8.1 88 727-814 184-291 (300)
129 PLN02779 haloacid dehalogenase 96.3 0.012 2.7E-07 63.7 8.7 110 730-841 144-269 (286)
130 KOG4656 Copper chaperone for s 96.3 0.015 3.2E-07 56.7 7.8 66 44-113 5-70 (247)
131 PLN02580 trehalose-phosphatase 96.3 0.043 9.3E-07 61.1 12.3 60 703-763 112-173 (384)
132 KOG1603 Copper chaperone [Inor 96.2 0.01 2.2E-07 49.7 5.3 52 136-190 12-63 (73)
133 PRK10671 copA copper exporting 96.1 0.0075 1.6E-07 75.6 6.5 63 129-199 4-66 (834)
134 TIGR01656 Histidinol-ppas hist 96.1 0.011 2.5E-07 57.1 6.3 83 730-814 27-140 (147)
135 TIGR01685 MDP-1 magnesium-depe 96.1 0.021 4.5E-07 56.6 8.2 90 728-817 43-155 (174)
136 TIGR01990 bPGM beta-phosphoglu 96.0 0.0091 2E-07 60.1 5.3 82 730-814 87-180 (185)
137 PLN02940 riboflavin kinase 96.0 0.016 3.5E-07 65.4 7.8 108 730-839 93-215 (382)
138 PRK09449 dUMP phosphatase; Pro 96.0 0.023 4.9E-07 59.3 8.1 111 730-844 95-222 (224)
139 TIGR01509 HAD-SF-IA-v3 haloaci 95.9 0.023 5E-07 56.9 7.5 84 730-814 85-179 (183)
140 TIGR00213 GmhB_yaeD D,D-heptos 95.9 0.034 7.4E-07 55.6 8.6 108 731-841 27-175 (176)
141 TIGR02009 PGMB-YQAB-SF beta-ph 95.8 0.013 2.8E-07 59.0 5.6 83 729-814 87-181 (185)
142 TIGR00685 T6PP trehalose-phosp 95.8 0.039 8.5E-07 58.4 9.3 63 778-844 165-239 (244)
143 KOG1603 Copper chaperone [Inor 95.7 0.029 6.4E-07 46.9 6.1 53 53-108 11-63 (73)
144 PF13419 HAD_2: Haloacid dehal 95.6 0.014 3E-07 57.8 4.7 87 728-814 75-172 (176)
145 PLN02811 hydrolase 95.5 0.051 1.1E-06 56.5 8.6 86 729-814 77-179 (220)
146 TIGR01686 FkbH FkbH-like domai 95.4 0.046 1E-06 60.4 8.2 107 711-817 4-128 (320)
147 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.4 0.12 2.5E-06 54.7 11.0 99 710-812 8-115 (242)
148 smart00775 LNS2 LNS2 domain. T 95.4 0.17 3.6E-06 49.5 11.1 87 728-814 25-141 (157)
149 TIGR01681 HAD-SF-IIIC HAD-supe 95.4 0.057 1.2E-06 50.8 7.6 80 730-810 29-126 (128)
150 PLN02205 alpha,alpha-trehalose 95.2 0.15 3.1E-06 63.4 12.6 68 699-766 585-653 (854)
151 TIGR01533 lipo_e_P4 5'-nucleot 95.2 0.079 1.7E-06 56.2 8.8 81 728-808 116-204 (266)
152 PLN03017 trehalose-phosphatase 95.2 0.26 5.7E-06 54.4 13.0 58 706-764 107-166 (366)
153 TIGR02463 MPGP_rel mannosyl-3- 95.1 0.057 1.2E-06 56.1 7.4 56 762-817 155-220 (221)
154 TIGR01664 DNA-3'-Pase DNA 3'-p 95.0 0.13 2.8E-06 50.8 9.1 103 710-814 13-157 (166)
155 PF09419 PGP_phosphatase: Mito 94.9 0.12 2.7E-06 50.5 8.6 100 705-806 36-151 (168)
156 TIGR02252 DREG-2 REG-2-like, H 94.9 0.057 1.2E-06 55.3 6.6 83 730-814 105-200 (203)
157 TIGR01549 HAD-SF-IA-v1 haloaci 94.8 0.066 1.4E-06 52.0 6.5 80 730-812 64-154 (154)
158 PRK05446 imidazole glycerol-ph 94.6 0.081 1.8E-06 58.5 7.3 87 729-815 29-144 (354)
159 PF06888 Put_Phosphatase: Puta 94.6 0.1 2.2E-06 54.2 7.5 77 730-806 71-183 (234)
160 smart00577 CPDc catalytic doma 94.5 0.036 7.9E-07 53.6 3.8 88 729-817 44-140 (148)
161 TIGR01261 hisB_Nterm histidino 94.5 0.078 1.7E-06 52.0 6.1 87 730-816 29-144 (161)
162 TIGR01691 enolase-ppase 2,3-di 94.1 0.22 4.8E-06 51.5 8.8 91 727-817 92-194 (220)
163 PF05116 S6PP: Sucrose-6F-phos 94.1 0.23 4.9E-06 52.6 9.1 45 779-823 164-212 (247)
164 TIGR01675 plant-AP plant acid 93.7 0.37 8E-06 49.8 9.5 78 728-805 118-209 (229)
165 PLN02919 haloacid dehalogenase 93.0 0.29 6.3E-06 62.7 9.0 109 730-840 161-285 (1057)
166 TIGR02247 HAD-1A3-hyp Epoxide 92.8 0.12 2.6E-06 53.2 4.4 86 729-814 93-191 (211)
167 COG3769 Predicted hydrolase (H 92.7 0.52 1.1E-05 47.2 8.2 56 711-770 8-63 (274)
168 TIGR01458 HAD-SF-IIA-hyp3 HAD- 91.7 1.2 2.6E-05 47.5 10.4 40 731-770 22-64 (257)
169 PRK10444 UMP phosphatase; Prov 91.6 1.1 2.3E-05 47.5 9.9 47 723-769 10-59 (248)
170 PLN02151 trehalose-phosphatase 91.6 1.6 3.6E-05 48.1 11.5 56 708-764 96-153 (354)
171 PF13344 Hydrolase_6: Haloacid 91.4 0.24 5.2E-06 44.4 4.1 83 724-812 8-99 (101)
172 PRK10563 6-phosphogluconate ph 91.3 0.22 4.8E-06 51.7 4.2 86 729-817 87-184 (221)
173 PRK09456 ?-D-glucose-1-phospha 91.0 0.75 1.6E-05 46.9 7.8 85 730-814 84-180 (199)
174 TIGR01993 Pyr-5-nucltdase pyri 90.7 0.66 1.4E-05 46.6 7.0 82 730-814 84-180 (184)
175 PHA02597 30.2 hypothetical pro 90.7 0.45 9.8E-06 48.4 5.8 83 730-814 74-169 (197)
176 PRK10725 fructose-1-P/6-phosph 89.6 0.69 1.5E-05 46.5 6.1 82 731-814 89-181 (188)
177 TIGR01457 HAD-SF-IIA-hyp2 HAD- 89.4 2.6 5.6E-05 44.7 10.5 55 712-770 3-60 (249)
178 PLN02645 phosphoglycolate phos 89.3 0.62 1.4E-05 51.2 5.9 99 709-817 27-136 (311)
179 TIGR02052 MerP mercuric transp 88.5 3.1 6.8E-05 35.5 8.8 64 48-111 25-88 (92)
180 PRK14054 methionine sulfoxide 87.3 0.85 1.8E-05 44.8 4.7 47 140-186 10-75 (172)
181 PRK10748 flavin mononucleotide 86.9 1.2 2.6E-05 46.8 6.0 106 730-843 113-237 (238)
182 TIGR01684 viral_ppase viral ph 86.3 1.7 3.7E-05 46.3 6.6 59 711-772 127-188 (301)
183 KOG3040 Predicted sugar phosph 86.3 2.6 5.7E-05 41.9 7.3 50 721-770 14-66 (262)
184 KOG3120 Predicted haloacid deh 85.8 2.7 5.8E-05 42.4 7.2 88 730-817 84-208 (256)
185 PRK00192 mannosyl-3-phosphogly 85.3 1.8 3.9E-05 46.6 6.5 57 711-770 5-61 (273)
186 PF03767 Acid_phosphat_B: HAD 84.8 1.3 2.8E-05 46.2 4.9 78 730-807 115-207 (229)
187 PRK05528 methionine sulfoxide 83.8 1.7 3.8E-05 41.9 4.9 47 140-186 8-68 (156)
188 PLN02177 glycerol-3-phosphate 83.3 5.6 0.00012 46.4 9.7 85 731-819 111-215 (497)
189 COG1011 Predicted hydrolase (H 82.9 8 0.00017 40.0 10.1 112 730-845 99-227 (229)
190 TIGR01452 PGP_euk phosphoglyco 82.3 8.2 0.00018 41.6 10.1 99 712-816 4-108 (279)
191 TIGR02052 MerP mercuric transp 82.1 5.8 0.00013 33.8 7.3 62 129-190 24-85 (92)
192 PRK13014 methionine sulfoxide 81.4 1.8 3.9E-05 43.1 4.0 47 140-186 15-80 (186)
193 COG0637 Predicted phosphatase/ 80.7 4.7 0.0001 41.8 7.2 87 728-814 84-181 (221)
194 TIGR02251 HIF-SF_euk Dullard-l 80.7 1.1 2.5E-05 43.9 2.4 84 730-814 42-134 (162)
195 TIGR01680 Veg_Stor_Prot vegeta 80.4 10 0.00022 40.2 9.4 77 728-805 143-235 (275)
196 PHA03398 viral phosphatase sup 79.2 4.8 0.0001 43.1 6.6 58 711-771 129-189 (303)
197 PRK13748 putative mercuric red 79.0 5.6 0.00012 47.7 8.2 66 131-200 3-68 (561)
198 PRK00058 methionine sulfoxide 78.7 2.5 5.5E-05 42.9 4.2 47 140-186 52-117 (213)
199 TIGR00401 msrA methionine-S-su 78.3 3.5 7.5E-05 39.6 4.8 47 140-186 7-72 (149)
200 COG0225 MsrA Peptide methionin 76.8 3.8 8.2E-05 39.9 4.6 47 140-186 13-78 (174)
201 COG0241 HisB Histidinol phosph 76.6 6.3 0.00014 39.1 6.2 84 731-814 32-144 (181)
202 PRK02261 methylaspartate mutas 75.9 18 0.00039 34.4 8.9 78 704-781 26-125 (137)
203 PF02358 Trehalose_PPase: Treh 75.5 6.1 0.00013 41.4 6.3 54 716-769 3-59 (235)
204 TIGR01501 MthylAspMutase methy 75.5 22 0.00047 33.6 9.2 69 720-790 54-130 (134)
205 COG3700 AphA Acid phosphatase 74.7 6.6 0.00014 38.1 5.5 86 731-817 115-210 (237)
206 TIGR01663 PNK-3'Pase polynucle 74.1 11 0.00023 44.4 8.2 99 711-809 169-301 (526)
207 PF01625 PMSR: Peptide methion 73.8 5.5 0.00012 38.6 4.9 48 140-187 7-73 (155)
208 PF12689 Acid_PPase: Acid Phos 73.7 11 0.00025 37.0 7.2 79 731-809 46-141 (169)
209 TIGR01493 HAD-SF-IA-v2 Haloaci 73.6 3.1 6.7E-05 41.1 3.4 74 730-810 90-174 (175)
210 cd00371 HMA Heavy-metal-associ 71.5 28 0.0006 24.5 7.8 42 51-92 3-44 (63)
211 TIGR02463 MPGP_rel mannosyl-3- 71.3 7.1 0.00015 40.3 5.5 40 731-770 17-56 (221)
212 PF06506 PrpR_N: Propionate ca 70.1 39 0.00084 33.6 10.3 123 731-856 18-172 (176)
213 PRK13748 putative mercuric red 69.3 15 0.00033 44.1 8.5 64 50-114 4-67 (561)
214 PTZ00445 p36-lilke protein; Pr 68.8 8 0.00017 39.2 4.9 116 698-813 31-199 (219)
215 PRK05550 bifunctional methioni 68.3 6.7 0.00015 41.8 4.5 47 140-186 134-199 (283)
216 KOG4383 Uncharacterized conser 68.2 37 0.0008 39.9 10.4 37 370-409 162-198 (1354)
217 PF08235 LNS2: LNS2 (Lipin/Ned 67.4 29 0.00064 33.6 8.3 87 728-814 25-141 (157)
218 TIGR01652 ATPase-Plipid phosph 65.8 2.1E+02 0.0045 37.4 18.2 20 388-407 94-113 (1057)
219 PRK14194 bifunctional 5,10-met 65.7 38 0.00082 36.7 9.6 62 773-834 138-209 (301)
220 COG1877 OtsB Trehalose-6-phosp 64.2 75 0.0016 33.8 11.3 65 705-769 13-80 (266)
221 TIGR02244 HAD-IG-Ncltidse HAD 63.2 28 0.00061 38.5 8.3 37 732-768 186-223 (343)
222 COG0078 ArgF Ornithine carbamo 63.1 1.2E+02 0.0026 32.7 12.5 104 704-815 65-178 (310)
223 cd00371 HMA Heavy-metal-associ 62.5 30 0.00065 24.3 6.3 41 134-174 4-44 (63)
224 cd02071 MM_CoA_mut_B12_BD meth 62.1 32 0.00069 31.8 7.4 62 720-781 52-115 (122)
225 cd02072 Glm_B12_BD B12 binding 62.0 45 0.00098 31.2 8.2 68 719-788 51-126 (128)
226 COG0841 AcrB Cation/multidrug 61.3 57 0.0012 41.8 11.5 141 47-189 45-209 (1009)
227 PLN02423 phosphomannomutase 59.3 15 0.00033 38.7 5.3 39 780-819 189-232 (245)
228 TIGR01456 CECR5 HAD-superfamil 58.8 37 0.00081 37.4 8.5 84 723-812 9-104 (321)
229 COG4669 EscJ Type III secretor 57.3 11 0.00024 38.6 3.4 45 143-188 111-173 (246)
230 PRK00058 methionine sulfoxide 57.2 48 0.001 33.9 8.0 49 58-106 52-119 (213)
231 PLN02591 tryptophan synthase 55.6 1.3E+02 0.0028 31.8 11.3 96 699-806 96-202 (250)
232 CHL00200 trpA tryptophan synth 54.8 2E+02 0.0043 30.6 12.7 97 699-807 109-216 (263)
233 PRK14179 bifunctional 5,10-met 54.7 62 0.0013 34.8 8.9 62 773-834 137-208 (284)
234 PRK14170 bifunctional 5,10-met 54.5 55 0.0012 35.1 8.4 62 773-834 136-207 (284)
235 PRK14189 bifunctional 5,10-met 53.4 63 0.0014 34.8 8.6 62 773-834 137-208 (285)
236 PF00875 DNA_photolyase: DNA p 53.2 66 0.0014 31.4 8.4 73 735-807 55-133 (165)
237 KOG1635 Peptide methionine sul 53.1 21 0.00045 34.6 4.4 47 140-186 31-96 (191)
238 PRK10555 aminoglycoside/multid 52.9 68 0.0015 41.6 10.5 140 47-188 44-209 (1037)
239 PRK14191 bifunctional 5,10-met 52.9 60 0.0013 34.9 8.4 62 773-834 136-207 (285)
240 COG0647 NagD Predicted sugar p 52.8 17 0.00036 38.8 4.2 104 723-836 17-130 (269)
241 PRK14054 methionine sulfoxide 52.7 28 0.0006 34.4 5.4 50 58-107 10-78 (172)
242 PRK14188 bifunctional 5,10-met 52.4 53 0.0011 35.6 8.0 62 773-834 137-208 (296)
243 PRK14175 bifunctional 5,10-met 51.1 72 0.0016 34.4 8.6 62 773-834 137-208 (286)
244 TIGR01689 EcbF-BcbF capsule bi 48.9 25 0.00054 32.8 4.2 33 729-761 23-55 (126)
245 PRK14174 bifunctional 5,10-met 47.5 1.1E+02 0.0024 33.1 9.4 61 774-834 139-213 (295)
246 PRK14184 bifunctional 5,10-met 47.1 1E+02 0.0022 33.2 9.0 62 773-834 136-211 (286)
247 PF13380 CoA_binding_2: CoA bi 45.8 27 0.00059 32.0 4.0 40 731-770 64-104 (116)
248 PRK14018 trifunctional thiored 45.6 26 0.00057 41.0 4.7 47 140-186 205-269 (521)
249 PRK03692 putative UDP-N-acetyl 45.2 1.1E+02 0.0024 32.1 8.9 123 736-860 95-234 (243)
250 PF05822 UMPH-1: Pyrimidine 5' 45.2 43 0.00093 35.1 5.7 114 730-844 90-241 (246)
251 TIGR01460 HAD-SF-IIA Haloacid 45.1 1E+02 0.0022 32.2 8.7 84 724-813 8-101 (236)
252 PRK15424 propionate catabolism 44.9 2.5E+02 0.0055 33.3 12.7 69 734-803 95-165 (538)
253 KOG2882 p-Nitrophenyl phosphat 44.5 81 0.0018 33.8 7.6 90 723-814 31-127 (306)
254 TIGR00640 acid_CoA_mut_C methy 44.2 1.1E+02 0.0025 28.7 7.9 69 719-787 54-125 (132)
255 PF01206 TusA: Sulfurtransfera 43.9 69 0.0015 26.1 5.8 54 49-112 2-55 (70)
256 cd04724 Tryptophan_synthase_al 43.8 1.2E+02 0.0026 31.8 9.0 95 699-805 94-199 (242)
257 PRK09479 glpX fructose 1,6-bis 43.0 81 0.0018 34.0 7.3 81 726-809 162-282 (319)
258 PF00763 THF_DHG_CYH: Tetrahyd 42.2 58 0.0013 29.9 5.5 65 728-792 9-86 (117)
259 PRK13111 trpA tryptophan synth 42.0 4.5E+02 0.0098 27.9 15.7 96 699-806 107-213 (258)
260 cd02067 B12-binding B12 bindin 41.8 1.6E+02 0.0035 26.8 8.6 55 720-774 52-108 (119)
261 TIGR01106 ATPase-IIC_X-K sodiu 41.7 4.7E+02 0.01 33.9 15.5 157 376-551 163-326 (997)
262 TIGR01452 PGP_euk phosphoglyco 41.5 1.3E+02 0.0029 32.2 9.2 82 732-814 145-242 (279)
263 TIGR00262 trpA tryptophan synt 41.5 2.2E+02 0.0048 30.2 10.6 95 699-805 105-210 (256)
264 PRK14176 bifunctional 5,10-met 41.4 85 0.0018 33.8 7.4 61 773-833 143-213 (287)
265 PRK05528 methionine sulfoxide 39.9 62 0.0013 31.4 5.5 49 58-106 8-70 (156)
266 PRK15122 magnesium-transportin 39.8 1E+02 0.0022 39.2 9.1 189 335-552 126-352 (903)
267 TIGR02250 FCP1_euk FCP1-like p 39.2 44 0.00096 32.5 4.5 43 730-773 58-101 (156)
268 PF00873 ACR_tran: AcrB/AcrD/A 39.1 32 0.0007 44.6 4.6 142 46-189 43-210 (1021)
269 TIGR01517 ATPase-IIB_Ca plasma 39.1 4.5E+02 0.0099 33.8 14.8 35 518-552 325-359 (941)
270 PF13242 Hydrolase_like: HAD-h 38.6 38 0.00083 28.1 3.5 55 783-839 12-74 (75)
271 PRK14185 bifunctional 5,10-met 37.9 1.9E+02 0.0041 31.3 9.3 62 773-834 136-211 (293)
272 PF15584 Imm44: Immunity prote 37.9 15 0.00032 31.7 0.8 19 387-405 13-31 (94)
273 cd04728 ThiG Thiazole synthase 37.8 3.9E+02 0.0084 28.0 11.1 77 728-806 102-188 (248)
274 TIGR01459 HAD-SF-IIA-hyp4 HAD- 37.8 31 0.00068 36.2 3.5 81 732-814 140-236 (242)
275 PRK15127 multidrug efflux syst 37.7 1.9E+02 0.0041 37.7 11.1 140 47-188 44-209 (1049)
276 PRK14183 bifunctional 5,10-met 37.5 1.4E+02 0.003 32.1 8.2 62 773-834 136-207 (281)
277 cd01516 FBPase_glpX Bacterial 37.5 1.2E+02 0.0026 32.6 7.6 81 726-809 159-279 (309)
278 PRK14178 bifunctional 5,10-met 37.4 1.5E+02 0.0033 31.8 8.5 62 773-834 131-202 (279)
279 PRK15108 biotin synthase; Prov 36.7 3.5E+02 0.0075 30.2 11.7 100 697-804 80-199 (345)
280 PRK13014 methionine sulfoxide 36.2 52 0.0011 32.9 4.4 49 58-106 15-82 (186)
281 TIGR01647 ATPase-IIIA_H plasma 35.7 1.8E+02 0.0039 36.3 10.2 34 520-553 237-270 (755)
282 PF00873 ACR_tran: AcrB/AcrD/A 35.1 2.1E+02 0.0045 37.2 11.0 50 60-109 157-212 (1021)
283 PF12710 HAD: haloacid dehalog 34.9 20 0.00043 35.8 1.4 13 576-588 1-13 (192)
284 PRK12415 fructose 1,6-bisphosp 34.7 1.4E+02 0.003 32.5 7.5 82 726-809 160-280 (322)
285 cd05017 SIS_PGI_PMI_1 The memb 34.3 1E+02 0.0023 28.1 6.0 41 732-774 56-96 (119)
286 PRK13125 trpA tryptophan synth 34.2 4.6E+02 0.0099 27.5 11.6 122 724-852 104-241 (244)
287 PF01625 PMSR: Peptide methion 33.9 1.1E+02 0.0024 29.7 6.2 50 58-107 7-75 (155)
288 PRK10792 bifunctional 5,10-met 33.8 2.7E+02 0.0058 30.0 9.7 62 773-834 138-209 (285)
289 cd00860 ThrRS_anticodon ThrRS 33.6 1.5E+02 0.0033 25.1 6.7 47 724-770 6-53 (91)
290 PRK04302 triosephosphate isome 33.2 1.8E+02 0.004 30.0 8.3 87 731-819 99-203 (223)
291 TIGR02329 propionate_PrpR prop 33.1 4.8E+02 0.01 31.0 12.6 102 734-854 85-189 (526)
292 PF01206 TusA: Sulfurtransfera 32.7 94 0.002 25.3 4.9 50 131-190 2-51 (70)
293 cd01994 Alpha_ANH_like_IV This 32.7 2.3E+02 0.005 28.6 8.7 47 756-802 46-98 (194)
294 PRK14172 bifunctional 5,10-met 32.6 99 0.0021 33.1 6.2 62 773-834 137-208 (278)
295 TIGR00915 2A0602 The (Largely 32.5 2.5E+02 0.0055 36.5 11.1 141 46-188 43-209 (1044)
296 TIGR03679 arCOG00187 arCOG0018 32.5 1.9E+02 0.0041 29.8 8.2 63 733-797 73-140 (218)
297 PRK10614 multidrug efflux syst 32.3 1.9E+02 0.0042 37.5 9.9 144 45-189 44-211 (1025)
298 TIGR02765 crypto_DASH cryptoch 32.2 1.5E+02 0.0033 34.1 8.3 62 733-794 61-127 (429)
299 cd00532 MGS-like MGS-like doma 32.0 2.5E+02 0.0053 25.4 8.0 65 724-793 3-68 (112)
300 PRK00208 thiG thiazole synthas 31.2 6.2E+02 0.013 26.6 11.4 76 728-805 102-187 (250)
301 TIGR01524 ATPase-IIIB_Mg magne 31.1 3.6E+02 0.0078 34.3 11.9 194 328-550 96-317 (867)
302 PF02401 LYTB: LytB protein; 31.0 7E+02 0.015 26.9 13.9 100 721-821 156-266 (281)
303 PRK12388 fructose-1,6-bisphosp 30.7 1.7E+02 0.0037 31.6 7.4 82 726-809 159-291 (321)
304 TIGR03849 arch_ComA phosphosul 30.6 2.1E+02 0.0046 29.8 7.9 62 733-796 41-117 (237)
305 PRK14169 bifunctional 5,10-met 30.4 1.1E+02 0.0024 32.9 6.1 62 773-834 135-206 (282)
306 PRK09579 multidrug efflux prot 30.3 3.6E+02 0.0078 35.0 11.9 140 48-189 47-210 (1017)
307 TIGR00640 acid_CoA_mut_C methy 30.3 4.6E+02 0.01 24.6 10.0 101 721-822 6-115 (132)
308 PRK14167 bifunctional 5,10-met 30.2 1.1E+02 0.0025 33.1 6.2 61 773-833 136-210 (297)
309 COG1888 Uncharacterized protei 29.7 3.2E+02 0.007 23.7 7.3 71 44-114 4-79 (97)
310 TIGR00612 ispG_gcpE 1-hydroxy- 28.8 2.3E+02 0.005 31.0 8.1 85 736-821 213-319 (346)
311 COG4996 Predicted phosphatase 28.4 1.1E+02 0.0023 28.6 4.7 44 730-773 41-84 (164)
312 KOG1250 Threonine/serine dehyd 28.3 1.5E+02 0.0032 33.2 6.6 91 710-808 80-176 (457)
313 PRK00856 pyrB aspartate carbam 28.1 2.7E+02 0.0059 30.4 8.8 125 703-834 65-220 (305)
314 TIGR03679 arCOG00187 arCOG0018 27.7 3.4E+02 0.0074 27.9 9.1 70 734-803 9-97 (218)
315 COG4004 Uncharacterized protei 27.7 1E+02 0.0022 26.6 4.1 47 95-172 12-58 (96)
316 TIGR03821 AblA_like_1 lysine-2 27.2 3.5E+02 0.0077 29.7 9.6 63 729-791 216-299 (321)
317 PTZ00445 p36-lilke protein; Pr 27.1 1.4E+02 0.0029 30.6 5.7 71 730-801 26-100 (219)
318 TIGR00401 msrA methionine-S-su 26.9 1.3E+02 0.0027 29.1 5.3 49 58-106 7-74 (149)
319 cd06279 PBP1_LacI_like_3 Ligan 26.9 3.6E+02 0.0079 28.5 9.7 37 737-773 47-84 (283)
320 TIGR03556 photolyase_8HDF deox 26.9 2.7E+02 0.0058 32.6 9.1 63 733-795 55-122 (471)
321 TIGR00330 glpX fructose-1,6-bi 26.7 2.5E+02 0.0054 30.4 7.7 82 726-809 159-291 (321)
322 COG1171 IlvA Threonine dehydra 26.7 1E+02 0.0023 34.0 5.2 55 753-810 82-138 (347)
323 cd04726 KGPDC_HPS 3-Keto-L-gul 26.6 5.5E+02 0.012 25.6 10.5 70 733-803 90-168 (202)
324 TIGR00603 rad25 DNA repair hel 26.6 2.7E+02 0.0059 34.3 9.2 87 728-818 477-568 (732)
325 TIGR03822 AblA_like_2 lysine-2 26.4 3.6E+02 0.0078 29.7 9.5 85 700-791 188-293 (321)
326 TIGR00696 wecB_tagA_cpsF bacte 26.4 3.4E+02 0.0073 27.0 8.4 117 736-853 38-171 (177)
327 PRK14182 bifunctional 5,10-met 26.3 1.7E+02 0.0036 31.6 6.5 64 728-791 10-86 (282)
328 PRK14190 bifunctional 5,10-met 26.3 1.4E+02 0.003 32.2 5.9 62 773-834 137-208 (284)
329 PLN02389 biotin synthase 26.2 3.2E+02 0.0069 30.9 9.2 103 696-803 119-240 (379)
330 PTZ00314 inosine-5'-monophosph 26.0 5.6E+02 0.012 30.1 11.5 113 698-813 180-304 (495)
331 TIGR01494 ATPase_P-type ATPase 25.8 9.9E+02 0.021 28.0 13.8 151 376-552 56-213 (499)
332 COG2503 Predicted secreted aci 25.7 2.8E+02 0.0061 28.9 7.6 24 786-809 187-210 (274)
333 COG0225 MsrA Peptide methionin 25.4 1.3E+02 0.0028 29.6 4.9 50 58-107 13-81 (174)
334 COG0569 TrkA K+ transport syst 25.3 4.5E+02 0.0099 27.2 9.6 78 702-785 16-109 (225)
335 PRK09577 multidrug efflux prot 25.2 2.6E+02 0.0057 36.3 9.3 141 47-189 44-209 (1032)
336 PRK10614 multidrug efflux syst 25.2 1.4E+03 0.029 29.8 15.8 61 47-107 660-730 (1025)
337 TIGR00739 yajC preprotein tran 25.0 4.2E+02 0.0091 22.7 7.6 16 347-362 26-42 (84)
338 PLN03064 alpha,alpha-trehalose 25.0 1.8E+02 0.0039 36.9 7.5 72 698-769 579-662 (934)
339 PF03129 HGTP_anticodon: Antic 24.7 1.9E+02 0.0041 24.9 5.7 48 723-770 3-54 (94)
340 PRK08508 biotin synthase; Prov 24.5 6.7E+02 0.014 26.9 11.0 72 733-804 75-165 (279)
341 PRK11018 hypothetical protein; 24.4 2.6E+02 0.0056 23.5 6.1 55 48-112 9-63 (78)
342 TIGR02370 pyl_corrinoid methyl 24.2 1.2E+02 0.0026 30.8 4.9 66 705-772 108-190 (197)
343 COG0474 MgtA Cation transport 24.1 6.6E+02 0.014 32.2 12.4 207 326-553 109-332 (917)
344 PF04273 DUF442: Putative phos 23.8 2.8E+02 0.0061 25.1 6.7 66 736-801 17-96 (110)
345 PF14336 DUF4392: Domain of un 23.7 1.7E+02 0.0036 31.8 6.1 31 776-808 161-191 (291)
346 cd04906 ACT_ThrD-I_1 First of 23.7 3.3E+02 0.0071 23.1 6.9 41 720-761 39-80 (85)
347 cd04888 ACT_PheB-BS C-terminal 23.5 3.8E+02 0.0083 21.6 7.2 63 95-161 12-74 (76)
348 PRK10503 multidrug efflux syst 23.4 3.9E+02 0.0086 34.7 10.5 143 45-189 53-220 (1040)
349 PRK14805 ornithine carbamoyltr 23.0 3.7E+02 0.0079 29.3 8.6 93 704-804 59-159 (302)
350 KOG0208 Cation transport ATPas 22.9 5.1E+02 0.011 32.7 10.3 208 333-594 220-473 (1140)
351 PLN02645 phosphoglycolate phos 22.6 1.7E+02 0.0036 32.1 6.0 58 785-844 240-307 (311)
352 cd00859 HisRS_anticodon HisRS 22.5 2.7E+02 0.0059 23.1 6.3 46 724-769 6-52 (91)
353 PRK00652 lpxK tetraacyldisacch 22.4 2.1E+02 0.0046 31.5 6.7 57 783-839 70-154 (325)
354 PRK01122 potassium-transportin 22.2 1.5E+03 0.033 27.8 16.5 71 694-765 446-525 (679)
355 COG2179 Predicted hydrolase of 22.2 3E+02 0.0065 27.0 6.7 83 692-775 45-138 (175)
356 PHA02669 hypothetical protein; 22.1 2E+02 0.0044 27.5 5.4 48 291-357 1-49 (210)
357 PLN02423 phosphomannomutase 21.7 2E+02 0.0043 30.2 6.2 46 712-761 9-54 (245)
358 TIGR01116 ATPase-IIA1_Ca sarco 21.6 4.9E+02 0.011 33.3 10.7 215 330-553 46-273 (917)
359 PLN02527 aspartate carbamoyltr 21.6 4.1E+02 0.009 29.0 8.7 94 704-803 60-162 (306)
360 PF03808 Glyco_tran_WecB: Glyc 21.5 5.4E+02 0.012 25.2 8.9 114 736-850 38-169 (172)
361 PRK05265 pyridoxine 5'-phospha 21.2 2.7E+02 0.0059 29.0 6.6 39 732-771 112-150 (239)
362 COG1832 Predicted CoA-binding 21.0 4.2E+02 0.009 25.1 7.1 87 720-808 17-113 (140)
363 PF11491 DUF3213: Protein of u 21.0 1.4E+02 0.0031 25.2 3.7 48 143-190 13-60 (88)
364 TIGR03028 EpsE polysaccharide 20.9 1.4E+02 0.003 31.3 4.7 35 360-395 201-236 (239)
365 PRK13670 hypothetical protein; 20.9 6E+02 0.013 28.8 10.0 91 720-810 2-112 (388)
366 COG0415 PhrB Deoxyribodipyrimi 20.7 3.6E+02 0.0077 31.3 8.1 63 734-796 56-123 (461)
367 cd04236 AAK_NAGS-Urea AAK_NAGS 20.7 4.2E+02 0.009 28.4 8.3 100 686-793 8-112 (271)
368 KOG3085 Predicted hydrolase (H 20.5 2E+02 0.0044 30.0 5.7 91 733-825 116-220 (237)
369 PRK14192 bifunctional 5,10-met 20.2 2.4E+02 0.0053 30.4 6.5 64 728-791 12-89 (283)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-153 Score=1295.24 Aligned_cols=831 Identities=49% Similarity=0.785 Sum_probs=763.9
Q ss_pred EEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhhhcccCCCCCCCCc
Q 002427 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQG 126 (924)
Q Consensus 47 ~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 126 (924)
+..+++.||+|++|+..+|+.+++.+|+.++.+.+..+++++.||+...+++.+.+.++++||.+...+.... ..
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~----~~- 144 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNG----NS- 144 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccC----CC-
Confidence 5679999999999999999999999999999999999999999999999999999999999999877654321 11
Q ss_pred ceeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeecccccc---
Q 002427 127 TIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFA--- 203 (924)
Q Consensus 127 ~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~~~~~--- 203 (924)
.....|.+.||+|.+|...||+.+.+++||.+++++..++++.|.|||+.++++++.+.|+..| |.+......+
T Consensus 145 ~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~ 221 (951)
T KOG0207|consen 145 NQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTF 221 (951)
T ss_pred CCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccch
Confidence 1567899999999999999999999999999999999999999999999999999999999999 6554332111
Q ss_pred cccccchHHHHhhHHHhHHHHHhhhhHHHHHhhccchhhHHHHhhhccCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002427 204 RMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRA 283 (924)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~ 283 (924)
+...+...+.+.|++.|++++.+++|++++.+.+++............+++.+..+++++|++|++|..||+||..||++
T Consensus 222 ~~~l~~~~ei~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ks 301 (951)
T KOG0207|consen 222 KNSLKHKEEIRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKS 301 (951)
T ss_pred hhhhhhhhHHHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHH
Confidence 11223456778999999999999999998877766543211111122445667889999999999999999999999999
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeE
Q 002427 284 LRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA 363 (924)
Q Consensus 284 l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~ 363 (924)
|++++.|||+|++|++.+||+||++.++...+... +..|||++.|++.|+++|+|+|.+++.|+..++.+|+++.|.++
T Consensus 302 L~~g~~nMdvLv~L~t~aay~~S~~~~~~~~~~~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a 380 (951)
T KOG0207|consen 302 LKRGSANMDVLVVLGTTAAYFYSIFSLLAAVVFDS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKA 380 (951)
T ss_pred HhcCCCCceeehhhHHHHHHHHHHHHHHHHHHccC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccc
Confidence 99999999999999999999999999888766633 78999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCCccccceeeecceE
Q 002427 364 LLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVL 443 (924)
Q Consensus 364 ~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~ 443 (924)
.++ .+|+ ++++|+.+.|++||+|.|.||++||+||+|++|++.||||++|||++||.|++|++|.+||+|.+|.+
T Consensus 381 ~ii---~~g~--~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l 455 (951)
T KOG0207|consen 381 TII---EDGS--EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTL 455 (951)
T ss_pred eEe---ecCC--cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceE
Confidence 998 5553 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-cCCCCCcccCCCCccHHH
Q 002427 444 HIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGV-LGAYPEQWLPENGTHFVF 522 (924)
Q Consensus 444 ~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 522 (924)
.++++++|.||.+++|.++++++|.+|+|+|+++|+++.||+|+++++++++|++|++.+. ...++..|. ..+..
T Consensus 456 ~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~ 531 (951)
T KOG0207|consen 456 LVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSH 531 (951)
T ss_pred EEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 344455554 57899
Q ss_pred HHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCC-CC
Q 002427 523 ALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MD 601 (924)
Q Consensus 523 ~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~ 601 (924)
++..+++|++++|||+|++|+|++++++.+.++++|+++|+++.+|.+.++++++||||||||+|++.|.++....+ .+
T Consensus 532 a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~ 611 (951)
T KOG0207|consen 532 AFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPIS 611 (951)
T ss_pred HHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876 78
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCe--EEEEEcCeEE
Q 002427 602 RGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG--IQCFISGKQV 679 (924)
Q Consensus 602 ~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--v~~~~~g~~~ 679 (924)
..+++.++++.|..|+||+++||++|+++... ......+.+|+..+|.| +.+.++|+++
T Consensus 612 ~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~-------------------~~~~~~~~~~~~~pg~g~~~~~~~~~~~i 672 (951)
T KOG0207|consen 612 LKEALALVAAMESGSEHPIGKAIVDYAKEKLV-------------------EPNPEGVLSFEYFPGEGIYVTVTVDGNEV 672 (951)
T ss_pred HHHHHHHHHHHhcCCcCchHHHHHHHHHhccc-------------------ccCccccceeecccCCCcccceEEeeeEE
Confidence 89999999999999999999999999998631 11123456788889998 7788999999
Q ss_pred EEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH
Q 002427 680 LVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT 759 (924)
Q Consensus 680 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t 759 (924)
.+|+++|+.+++...++++++..++.+..|+++++++.|+++.|++.++|++|||+..+|+.||++||+++|+||||..+
T Consensus 673 ~iGN~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a 752 (951)
T KOG0207|consen 673 LIGNKEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA 752 (951)
T ss_pred eechHHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhH
Q 002427 760 AHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLED 839 (924)
Q Consensus 760 a~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~ 839 (924)
|+++|+++||++|||++.|+||.++|+.+|++|+.|+|||||+||+|||++|||||++|.|+++|.++||+||+++||..
T Consensus 753 A~svA~~VGi~~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~ 832 (951)
T KOG0207|consen 753 ARSVAQQVGIDNVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRD 832 (951)
T ss_pred HHHHHHhhCcceEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHhHhhhcccccccCCCCc
Q 002427 840 VIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRL 915 (924)
Q Consensus 840 l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~~~~~~~~ 915 (924)
++.+|+++|+++++||+|+.|+++||+++||+|+|.|.|| |+.|+||+|.++|.+||++|++|||.|++||+|..
T Consensus 833 v~~ai~LSrkt~~rIk~N~~~A~~yn~~~IpIAagvF~P~-~~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~ 907 (951)
T KOG0207|consen 833 VPFAIDLSRKTVKRIKLNFVWALIYNLVGIPIAAGVFAPF-GIVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTI 907 (951)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhheecccCC-ccccCchHHHHHHHhhhHHHhhhHHHHhhcccccc
Confidence 9999999999999999999999999999999999999998 48999999999999999999999999999999963
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-144 Score=1256.23 Aligned_cols=706 Identities=46% Similarity=0.724 Sum_probs=647.6
Q ss_pred eeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCC-hhhHHHhhhhcCCccceeecccccc-ccc
Q 002427 129 VGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVMNPFA-RMT 206 (924)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~-~~~i~~~I~~~g~~~y~~~~~~~~~-~~~ 206 (924)
+..+.++||+|++|+++|| .+++++||.+++||+.++++.+.||+...+ .+++.+.+++.| |......... ..+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~~ 78 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPAE 78 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchhh
Confidence 4579999999999999999 999999999999999999999999987766 799999999999 7654311000 000
Q ss_pred ccchHHHHhhHHHhHHHHHhhhhHHHHHhhccchhhHHHHhhhccCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 002427 207 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 286 (924)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l~~ 286 (924)
.+.... +..+++++++.++++|.++..+..+. ......|+++++++|++||+|+|||+.+|+++++
T Consensus 79 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 79 AEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL-------------GAFLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 000011 34466777787887777665433211 0134568999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEE
Q 002427 287 GSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLV 366 (924)
Q Consensus 287 ~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~ 366 (924)
+++|||+|+++|+++||+||++.++.. .||++++++++|+++|+++|.+++.|+++++++|.++.|++++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~ 216 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVV 216 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999999999999999999988763 899999999999999999999999999999999999999999888
Q ss_pred EecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCCccccceeeecceEEEE
Q 002427 367 VKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQ 446 (924)
Q Consensus 367 ~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~ 446 (924)
+ +|| ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.++++
T Consensus 217 ~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i~ 291 (713)
T COG2217 217 R--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTIR 291 (713)
T ss_pred e--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEEE
Confidence 4 355 37899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHH
Q 002427 447 ATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMF 526 (924)
Q Consensus 447 v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (924)
|+++|.+|++++|+++++++|.+|+|+|+++|+++.+|+|.++++++++|++|++.+. .+|..++.+
T Consensus 292 vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~~ 358 (713)
T COG2217 292 VTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALYR 358 (713)
T ss_pred EEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887641 368889999
Q ss_pred HhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHH
Q 002427 527 SISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFL 606 (924)
Q Consensus 527 ~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l 606 (924)
++++|+++|||||++|+|++++.++++++|+||++|+++++|+++++|+++||||||||+|+|+|.++...++ ++++++
T Consensus 359 a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~L 437 (713)
T COG2217 359 ALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDELL 437 (713)
T ss_pred HHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 889999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEcCeEEEEeeHhh
Q 002427 607 TLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKL 686 (924)
Q Consensus 607 ~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~g~~~~ig~~~~ 686 (924)
.+++++|++|+||+++||++++++.+ ...+.+|++++|+|+++.++|+.+.+|++++
T Consensus 438 ~laAalE~~S~HPiA~AIv~~a~~~~-----------------------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~ 494 (713)
T COG2217 438 ALAAALEQHSEHPLAKAIVKAAAERG-----------------------LPDVEDFEEIPGRGVEAEVDGERVLVGNARL 494 (713)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHhcC-----------------------CCCccceeeeccCcEEEEECCEEEEEcCHHH
Confidence 99999999999999999999888752 2345569999999999999999999999999
Q ss_pred HhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Q 002427 687 LNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE 766 (924)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~ 766 (924)
+.+.+.+.+. ..+..+.++++|.++++++.|++++|+++++|++||+++++|++||+.|++++|+||||+.+|++||++
T Consensus 495 ~~~~~~~~~~-~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~ 573 (713)
T COG2217 495 LGEEGIDLPL-LSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKE 573 (713)
T ss_pred HhhcCCCccc-hhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence 9998887765 566677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHH
Q 002427 767 IGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDL 846 (924)
Q Consensus 767 ~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~ 846 (924)
+||++++|+++||||.++|+.||++|++|+|||||+||+|||++||||||||+|+|+|+++||++|+++|++.+++++++
T Consensus 574 lGId~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~l 653 (713)
T COG2217 574 LGIDEVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDL 653 (713)
T ss_pred cChHhheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHhHhhhccccccc
Q 002427 847 SRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRY 910 (924)
Q Consensus 847 ~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~~~ 910 (924)
||+++++||||++|+|+||+++||+|++++ ++||+|+++|.+||++|++|||||+++
T Consensus 654 sr~t~~~IkqNl~~A~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 654 SRATRRIIKQNLFWAFGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 999999999999999999999999998653 799999999999999999999999974
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=8.3e-128 Score=1180.37 Aligned_cols=806 Identities=36% Similarity=0.580 Sum_probs=698.6
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhhhcccCC--C--C
Q 002427 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESST--S--G 121 (924)
Q Consensus 46 ~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~--~--~ 121 (924)
+++++.|+||+|++|+.++++++++++||.++.+++. +..+..+ .+.+.+.+.++++||++........ . .
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4678999999999999999999999999999999984 4444432 4778999999999999875431100 0 0
Q ss_pred ---------------CCCCcceeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhh
Q 002427 122 ---------------PKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 122 ---------------~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I 186 (924)
+......+.++.++||+|.+|++.+++.+.+.+||.++++++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 000012246788999999999999999999999999999999999988874 24577888888
Q ss_pred hhcCCccceeeccccccccc-c-c--chHHHHhhHHHhHHHHHhhhhHHHHHhhccchhhHHHHhhhccCCcchHHHHH-
Q 002427 187 AGRSNGKFQIRVMNPFARMT-S-R--DSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLN- 261 (924)
Q Consensus 187 ~~~g~~~y~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 261 (924)
++.| |.+.+.+...... . . .+++.+.+.+++..++++++|++++.+...++ . ........|+.
T Consensus 155 ~~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~ 222 (834)
T PRK10671 155 EKAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNM-------M--VTADNRSLWLVI 222 (834)
T ss_pred HhcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------c--cCccchhHHHHH
Confidence 8888 6654332211011 0 0 01122344556666777777776654321000 0 00001123553
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhh-cCCCCcchhhhHHHHHHHHHHHHHH
Q 002427 262 WALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVV-TGFWSPTYFETSAMLITFVLFGKYL 340 (924)
Q Consensus 262 ~~l~~~v~~~~g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~l 340 (924)
+++++|+++|+|+|||++||++|+++++|||+|+++|+++||+||++.++.... .....+.||++++++++|+++|+|+
T Consensus 223 ~~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~l 302 (834)
T PRK10671 223 GLITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHML 302 (834)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999987764321 1112256999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCC
Q 002427 341 EILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGE 420 (924)
Q Consensus 341 e~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGE 420 (924)
|.+++.|+++.+++|.++.|.+++++ ++| .+++|++++|+|||+|+|++||+||+||+|++|++.||||+||||
T Consensus 303 e~~~~~~~~~~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 303 EARARQRSSKALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCC
Confidence 99999999999999999999999998 666 468899999999999999999999999999999999999999999
Q ss_pred CcceeccCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002427 421 AVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWY 500 (924)
Q Consensus 421 s~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 500 (924)
|.|+.|++||.||+||+|.+|.++++|+++|.+|.+++|.+++++++.+|+++|+++|+++++|+|++++++++++++|+
T Consensus 377 s~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~ 456 (834)
T PRK10671 377 PIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWY 456 (834)
T ss_pred CCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecC
Q 002427 501 VAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDK 580 (924)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDK 580 (924)
+.+. ...|..++.+++++++++|||+|++++|+++..++++++|+||++|+++++|+++++|++||||
T Consensus 457 ~~~~------------~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDK 524 (834)
T PRK10671 457 FFGP------------APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDK 524 (834)
T ss_pred HhCC------------chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcC
Confidence 6431 1235678889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccc
Q 002427 581 TGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS 660 (924)
Q Consensus 581 TGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (924)
|||||+|+|+|.++...++.++.+++.+++++|..++||+++||+++++... ...+.
T Consensus 525 TGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~-----------------------~~~~~ 581 (834)
T PRK10671 525 TGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMT-----------------------LPQVN 581 (834)
T ss_pred CCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCC-----------------------CCCcc
Confidence 9999999999999988887888899999999999999999999999875321 12356
Q ss_pred cceeecCCeEEEEEcCeEEEEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHH
Q 002427 661 DFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVE 740 (924)
Q Consensus 661 ~~~~~~g~gv~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~ 740 (924)
+|++++|.|+.++++|+.+.+|+++++.+.+... +.+.+..++++++|.+++++++|++++|++.+.|++||+++++|+
T Consensus 582 ~~~~~~g~Gv~~~~~g~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~ 660 (834)
T PRK10671 582 GFRTLRGLGVSGEAEGHALLLGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQ 660 (834)
T ss_pred cceEecceEEEEEECCEEEEEeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHH
Confidence 7889999999999999999999999998776543 334555667788999999999999999999999999999999999
Q ss_pred HHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCC
Q 002427 741 GLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAG 820 (924)
Q Consensus 741 ~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 820 (924)
+|++.|++++|+|||+..++..+++++||+++++++.|++|.++++.+|.+|+.|+|+|||.||+||+++||+||+||+|
T Consensus 661 ~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g 740 (834)
T PRK10671 661 RLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGG 740 (834)
T ss_pred HHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHhH
Q 002427 821 TDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSV 900 (924)
Q Consensus 821 ~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v 900 (924)
++.++++||++++++++..|+.++++||+++++|+||+.|+++||++++|+|+|+++|++|+.|+||+|+++|.+||++|
T Consensus 741 ~~~a~~~ad~vl~~~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~v 820 (834)
T PRK10671 741 SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITV 820 (834)
T ss_pred CHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999998897799999999999999999
Q ss_pred hhhcccccccCCC
Q 002427 901 VCSSLLLRRYKKP 913 (924)
Q Consensus 901 ~~ns~~l~~~~~~ 913 (924)
++||+||++|++|
T Consensus 821 v~nslrl~~~~~~ 833 (834)
T PRK10671 821 VSNANRLLRFKPK 833 (834)
T ss_pred hhhhHHhcCCCCC
Confidence 9999999888766
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1.3e-115 Score=1050.23 Aligned_cols=687 Identities=30% Similarity=0.449 Sum_probs=600.6
Q ss_pred ceeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeeccccccccc
Q 002427 127 TIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMT 206 (924)
Q Consensus 127 ~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~~~~~~~~ 206 (924)
..+..++++||+|++|++.+|+.+.+.+||.++++++.+++..+.|++.. . +++.+.+++.| |++...+...
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~~~--- 123 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQAAA--- 123 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccchh---
Confidence 34567899999999999999999999999999999999999999998763 3 67778888888 7654322110
Q ss_pred ccchHHHHhh-HHHhHHHHHhhhhHHHHHhhccchhhHHHHhhhccCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002427 207 SRDSEETSNM-FRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALR 285 (924)
Q Consensus 207 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l~ 285 (924)
.+.+.+.+ ..+++ ++.+++|++++.+.. +. ....|+.++++ .+|+|+|||++||++++
T Consensus 124 --~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~---~~~~~~~~~~~a~~~l~ 182 (741)
T PRK11033 124 --AAPESRLKSENLPL---ITLAVMMAISWGLEQ-----------FN--HPFGQLAFIAT---TLVGLYPIARKALRLIR 182 (741)
T ss_pred --hhHHHHHHHHHHHH---HHHHHHHHHHHHHhh-----------hh--hHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 01111111 11111 111222222221100 00 01124444443 36789999999999999
Q ss_pred cCCC-CchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEE
Q 002427 286 NGST-NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL 364 (924)
Q Consensus 286 ~~~~-~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~ 364 (924)
++++ |||+|++++++++++++ . |+.++++++++++|+++|.++++|+++.+++|.++.|.+++
T Consensus 183 ~~~~~~~~~L~~~a~~~a~~~~---------------~-~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~ 246 (741)
T PRK11033 183 SGSPFAIETLMSVAAIGALFIG---------------A-TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETAT 246 (741)
T ss_pred cCCCCCccHHHHHHHHHHHHHc---------------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9885 99999999999987754 2 34578899999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCCccccceeeecceEE
Q 002427 365 LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLH 444 (924)
Q Consensus 365 v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~ 444 (924)
++ ||| ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||++.+|.++
T Consensus 247 vi---r~g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~ 320 (741)
T PRK11033 247 RL---RDG---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVT 320 (741)
T ss_pred EE---ECC---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEE
Confidence 98 677 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHH
Q 002427 445 IQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFAL 524 (924)
Q Consensus 445 ~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (924)
++|+++|.+|.++||.+++++++.+|+|+|+++|+++++|+|+++++++++|++|++.. ..+|..++
T Consensus 321 i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~-------------~~~~~~~i 387 (741)
T PRK11033 321 LEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF-------------AAPWQEWI 387 (741)
T ss_pred EEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999885532 13577789
Q ss_pred HHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHH
Q 002427 525 MFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGE 604 (924)
Q Consensus 525 ~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~ 604 (924)
.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+.++.++++
T Consensus 388 ~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~ 467 (741)
T PRK11033 388 YRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESE 467 (741)
T ss_pred HHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEcCeEEEEeeH
Q 002427 605 FLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNR 684 (924)
Q Consensus 605 ~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~g~~~~ig~~ 684 (924)
++.+++++|..+.||+++||++++++.+. .++...+++..+|.|+++.++|+.+.+|++
T Consensus 468 ~l~~aa~~e~~s~hPia~Ai~~~a~~~~~---------------------~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~ 526 (741)
T PRK11033 468 LLALAAAVEQGSTHPLAQAIVREAQVRGL---------------------AIPEAESQRALAGSGIEGQVNGERVLICAP 526 (741)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCC---------------------CCCCCcceEEEeeEEEEEEECCEEEEEecc
Confidence 99999999999999999999999876531 123345778889999999999999999999
Q ss_pred hhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 002427 685 KLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA 764 (924)
+++.+ .++++.+..++++.+|++++++++|++++|++.|+|++|||++++|++||++|++++|+|||+..+|.++|
T Consensus 527 ~~~~~----~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia 602 (741)
T PRK11033 527 GKLPP----LADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA 602 (741)
T ss_pred hhhhh----ccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 99865 23445556677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHH
Q 002427 765 REIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 765 ~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
+++||. ++++++|+||.++|+.+|+. +.|+|||||+||+|||++|||||+||+|++.++++||++++++++..|+.++
T Consensus 603 ~~lgi~-~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i 680 (741)
T PRK11033 603 GELGID-FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMI 680 (741)
T ss_pred HHcCCC-eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHH
Confidence 999995 78999999999999999965 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHhHhhhcccccccC
Q 002427 845 DLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYK 911 (924)
Q Consensus 845 ~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~~~~ 911 (924)
++||+++++|+||+.|+++||++++|+|+.++ ++||+|+++|.+||++|++||+|+.+||
T Consensus 681 ~~sr~~~~~I~~nl~~a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~Nslrl~~~~ 740 (741)
T PRK11033 681 ELSRATHANIRQNITIALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTANALRLLRKR 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHHHHHhhcccC
Confidence 99999999999999999999999999987322 6899999999999999999999999875
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=1.9e-103 Score=921.09 Aligned_cols=561 Identities=56% Similarity=0.875 Sum_probs=522.5
Q ss_pred cCHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhc-CCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 002427 272 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 350 (924)
Q Consensus 272 ~g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~ 350 (924)
+|+|||++||++|++|++|||+|++++++++|+||++.++.+... +...+.||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999988764321 1123579999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCC
Q 002427 351 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 430 (924)
Q Consensus 351 ~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~ 430 (924)
.+++|.++.|.++++++ ++| .+++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999884 234 4688999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002427 431 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPE 510 (924)
Q Consensus 431 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~ 510 (924)
.||+||+|.+|.++++|+++|.+|.+++|.+++++++.+|+|+|+++|+++++|+|++++++++++++|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred cccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceE
Q 002427 511 QWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRAT 590 (924)
Q Consensus 511 ~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~ 590 (924)
.++.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+|+++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 257789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeE
Q 002427 591 VTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGI 670 (924)
Q Consensus 591 v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv 670 (924)
+.++.+.++.++++++.+++++|++|+||+++|+++++++.+. ....+.++++++|+|+
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~---------------------~~~~~~~~~~~~g~Gi 353 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI---------------------TLVEVSDFKAIPGIGV 353 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC---------------------CcCCCCCeEEECCceE
Confidence 9999988877888999999999999999999999999876531 1123557888999999
Q ss_pred EEEEcCeEEEEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE
Q 002427 671 QCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV 750 (924)
Q Consensus 671 ~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~ 750 (924)
.+.++|+++.+|+++++.+.+..+++ .+++|.++++++.|++++|++.++|++||+++++|++||+.|++++
T Consensus 354 ~~~~~g~~~~iG~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ 425 (562)
T TIGR01511 354 EGTVEGTKIQLGNEKLLGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPV 425 (562)
T ss_pred EEEECCEEEEEECHHHHHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999877665432 3467899999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCE
Q 002427 751 MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY 830 (924)
Q Consensus 751 mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~ 830 (924)
|+|||+..++..+++++||+ +|+++.|++|.+.++.++++++.|+|+|||.||++|+++||+||++|.+++.+++.||+
T Consensus 426 ilSgd~~~~a~~ia~~lgi~-~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Adv 504 (562)
T TIGR01511 426 MLTGDNRKTAKAVAKELGIN-VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADV 504 (562)
T ss_pred EEcCCCHHHHHHHHHHcCCc-EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCE
Confidence 99999999999999999996 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHH
Q 002427 831 VLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAA 889 (924)
Q Consensus 831 vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a 889 (924)
+++++++..++.++++||+++++|+||+.|+++||++++|+|+|++.|+ |+.|+|++|
T Consensus 505 vl~~~~l~~l~~~i~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 505 VLMRNDLNDVATAIDLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 9999999999999999999999999999999999999999999888887 777999875
No 6
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=2.8e-95 Score=849.77 Aligned_cols=533 Identities=40% Similarity=0.611 Sum_probs=496.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecC
Q 002427 291 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 370 (924)
Q Consensus 291 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 370 (924)
||+|+++++..+|+++ .|+++ ++++++++++++++.++++|+++.+++|.++.|.+++++ |
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~---r 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL---R 61 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 7999999999988765 36665 778889999999999999999999999999999999998 6
Q ss_pred CCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCCccccceeeecceEEEEEEEe
Q 002427 371 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 450 (924)
Q Consensus 371 ~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~ 450 (924)
|| ++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.+|+||.+.+|.++++|+++
T Consensus 62 ~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~ 138 (536)
T TIGR01512 62 GG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKL 138 (536)
T ss_pred CC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEe
Confidence 77 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhh
Q 002427 451 GSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV 530 (924)
Q Consensus 451 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isv 530 (924)
|.+|.++++.+++++++.+++|+|+.+++++++|+|++++++++.+++|++.. .+..++.+++++
T Consensus 139 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~sv 203 (536)
T TIGR01512 139 PADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALVL 203 (536)
T ss_pred ccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888776532 122378899999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHH
Q 002427 531 VVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVA 610 (924)
Q Consensus 531 lv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~ 610 (924)
++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|++.++.+ .+++.+++
T Consensus 204 lv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a~ 277 (536)
T TIGR01512 204 LVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLAA 277 (536)
T ss_pred HhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865 37899999
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEcCeEEEEeeHhhHhhc
Q 002427 611 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNES 690 (924)
Q Consensus 611 ~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~g~~~~ig~~~~~~~~ 690 (924)
++|..+.||+++|+++++++.+ ...++++.+++|+++.++|.++.+|+++++.+.
T Consensus 278 ~~e~~~~hp~~~Ai~~~~~~~~-------------------------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~ 332 (536)
T TIGR01512 278 AAEQASSHPLARAIVDYARKRE-------------------------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAA 332 (536)
T ss_pred HHhccCCCcHHHHHHHHHHhcC-------------------------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhc
Confidence 9999999999999999987641 234567788999999999999999999998776
Q ss_pred CCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCC
Q 002427 691 GITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~v~mlTGD~~~ta~~iA~~~gi 769 (924)
+.. .++.+|.+++++++|+.+.|.+.++|++||+++++|++|+++|+ +++|+|||+..++..+++++||
T Consensus 333 ~~~----------~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi 402 (536)
T TIGR01512 333 VGA----------RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402 (536)
T ss_pred CCc----------chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCC
Confidence 532 34567889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHHHHHH
Q 002427 770 QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSR 848 (924)
Q Consensus 770 ~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r 848 (924)
+++|+++.|++|.++++.++++++.|+|+|||.||++|+++||+||++| ++++.+++.||++++++++..+++++++||
T Consensus 403 ~~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r 482 (536)
T TIGR01512 403 DEVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLAR 482 (536)
T ss_pred hhhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHHHHHHHhhhhhHhHhhhccccc
Q 002427 849 KTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 908 (924)
Q Consensus 849 ~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~ 908 (924)
++++++++|+.|++.||++++|+|+.+ .++||+|+++|.+||++|++||+|++
T Consensus 483 ~~~~~i~~nl~~a~~~n~~~i~~a~~G-------~~~p~~aa~~m~~ss~~v~~ns~r~~ 535 (536)
T TIGR01512 483 RTRRIVKQNVVIALGIILLLILLALFG-------VLPLWLAVLGHEGSTVLVILNALRLL 535 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHcChHHHHHHHHHhhc
Confidence 999999999999999999999998732 27999999999999999999999986
No 7
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=1e-94 Score=850.82 Aligned_cols=549 Identities=47% Similarity=0.725 Sum_probs=505.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecC
Q 002427 291 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 370 (924)
Q Consensus 291 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~ 370 (924)
||+|++++++.+|++|.| ..+++++++++++++++.++++|+++.+++|.++.|.+++++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~---r 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL---Q 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 899999999999988732 357789999999999999999999999999999999999998 5
Q ss_pred C-CceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecceeeecccccCCCcceeccCCCccccceeeecceEEEEEEE
Q 002427 371 V-GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATK 449 (924)
Q Consensus 371 ~-g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~ 449 (924)
+ | ++++|+.++|+|||+|++++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|++
T Consensus 62 ~~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~ 138 (556)
T TIGR01525 62 GDG---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTK 138 (556)
T ss_pred CCC---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEE
Confidence 5 4 46889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhh
Q 002427 450 VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSIS 529 (924)
Q Consensus 450 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 529 (924)
+|.+|+++++.+++++++.+++|+|+.+++++.+|+++++++++++|++|++.+. + .++.++++
T Consensus 139 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~---------------~-~~~~~~~~ 202 (556)
T TIGR01525 139 LGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA---------------L-GALYRALA 202 (556)
T ss_pred ecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c-hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876421 1 67889999
Q ss_pred hhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCC--HHHHHH
Q 002427 530 VVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD--RGEFLT 607 (924)
Q Consensus 530 vlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~--~~~~l~ 607 (924)
+++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+.++.+ .++++.
T Consensus 203 vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~ 282 (556)
T TIGR01525 203 VLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLA 282 (556)
T ss_pred HHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877655 788999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccc-cceeecCCeEEEEEcC-eEEEEeeHh
Q 002427 608 LVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS-DFSALPGRGIQCFISG-KQVLVGNRK 685 (924)
Q Consensus 608 ~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~gv~~~~~g-~~~~ig~~~ 685 (924)
++++++..+.||+++|+++++++.+... .. . ++.+++++|+++.++| .++.+|+++
T Consensus 283 ~a~~~e~~~~hp~~~Ai~~~~~~~~~~~---------------------~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~ 340 (556)
T TIGR01525 283 LAAALEQSSSHPLARAIVRYAKKRGLEL---------------------PK-QEDVEEVPGKGVEATVDGQEEVRIGNPR 340 (556)
T ss_pred HHHHHhccCCChHHHHHHHHHHhcCCCc---------------------cc-ccCeeEecCCeEEEEECCeeEEEEecHH
Confidence 9999999999999999999998753210 00 1 4567789999999999 799999999
Q ss_pred hHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHH
Q 002427 686 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~g-i~v~mlTGD~~~ta~~iA 764 (924)
++.....+.+ +..+..+++.++|++++++++|++++|.+.++|++||+++++|++|+++| ++++|+|||+..++.+++
T Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~ 419 (556)
T TIGR01525 341 LLELAAEPIS-ASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA 419 (556)
T ss_pred HHhhcCCCch-hhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH
Confidence 9844333322 23344556778899999999999999999999999999999999999999 999999999999999999
Q ss_pred HHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHH
Q 002427 765 REIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 765 ~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
+++|+.++|+++.|++|.++++.+++.|+.|+|+|||.||++|+++||+|+++|++++.+++.||+++.++++..+++++
T Consensus 420 ~~lgi~~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 420 AELGIDEVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred HHhCCCeeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccHH-HHHHHhhhhhHhHhhhcccc
Q 002427 845 DLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSLGIKLPPW-AAGACMALSSVSVVCSSLLL 907 (924)
Q Consensus 845 ~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~g~~l~p~-~a~~~m~~ss~~v~~ns~~l 907 (924)
++||+++++|++|+.|+++||++++|+|++++ ++|| +|+++|.+||++|++||+|+
T Consensus 500 ~~~r~~~~~i~~nl~~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 500 DLSRKTRRIIKQNLAWALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 99999999999999999999999999998543 5896 99999999999999999986
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=4.7e-93 Score=857.91 Aligned_cols=544 Identities=24% Similarity=0.374 Sum_probs=466.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccce
Q 002427 323 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 402 (924)
Q Consensus 323 ~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~D 402 (924)
|.+ +++++++++++..++.++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEece
Confidence 444 4556677778888899999999999999999999999998 777 679999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcceeccCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 002427 403 GIVVWGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 481 (924)
Q Consensus 403 g~vl~G~-~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 481 (924)
|+|++|+ ..||||+|||||.|+.|.+|+.+|+||.+.+|.++++|+++|.+|.+|+|.+++++++.+++|+|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 789999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccc
Q 002427 482 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 561 (924)
Q Consensus 482 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilv 561 (924)
.++++++++++++.+++|++.. ..+|..++.+++++++++|||+||+++|+++..++++|+|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999998888888776521 135788999999999999999999999999999999999999999
Q ss_pred cCchHHHHccCCcEEEecCCCccccCceEEEEEEecCC-CCHHHHHHHHHHH-hcCCCChHHHHHHHHHHhcCCCCCCCC
Q 002427 562 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVASA-EASSEHPLAKAVVEYARHFHFFDDPSL 639 (924)
Q Consensus 562 k~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~~~~~l~~~~~~-~~~s~hp~~~ai~~~~~~~~~~~~~~~ 639 (924)
|+++++|+||++|++|||||||||+|+|+|.+++..++ .+.++++.+++.+ +..+.||+++|+++++.+.+...
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~---- 350 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEAR---- 350 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHH----
Confidence 99999999999999999999999999999999987654 6677788877765 47789999999999886532000
Q ss_pred CCCCCCCccccCCCCcccccccceeecCCeEEEEE----cCeE--EEEeeHhhHhhcCCC---CChhhhHHHHHHHHcCC
Q 002427 640 NPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI----SGKQ--VLVGNRKLLNESGIT---IPDHVESFVVELEESAR 710 (924)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~----~g~~--~~ig~~~~~~~~~~~---~~~~~~~~~~~~~~~g~ 710 (924)
. .....+..+|++ .+++....+ +|+. +.+|+++.+.+.+.. .++++.+..+++..+|+
T Consensus 351 ---------~---~~~~~~~~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~ 417 (755)
T TIGR01647 351 ---------D---GYKVLEFVPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGY 417 (755)
T ss_pred ---------h---cCceEEEeccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCC
Confidence 0 011122334443 345555555 2544 457999998776532 23445566778889999
Q ss_pred eEEEEEE-C----CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--------------
Q 002427 711 TGILVAY-D----DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-------------- 771 (924)
Q Consensus 711 ~~i~va~-~----~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-------------- 771 (924)
|++++|+ + ++++|+++|+||+|||++++|++||++||+++|+||||+.||.++|+++||.+
T Consensus 418 rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~ 497 (755)
T TIGR01647 418 RALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNR 497 (755)
T ss_pred EEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcch
Confidence 9999998 2 38999999999999999999999999999999999999999999999999975
Q ss_pred ----------------EEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecC
Q 002427 772 ----------------VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRN 835 (924)
Q Consensus 772 ----------------v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~ 835 (924)
+|||++|+||.++|+.||++|+.|+|+|||+||+|||++||||||||+|+|+|+++||+||++|
T Consensus 498 ~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d 577 (755)
T TIGR01647 498 DDLPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEP 577 (755)
T ss_pred hhCCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCCccHHH---HHHHhhhhhHhHhhhcc
Q 002427 836 SLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIKLPPWA---AGACMALSSVSVVCSSL 905 (924)
Q Consensus 836 ~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~-g~~~~~~g~~l~p~~---a~~~m~~ss~~v~~ns~ 905 (924)
+|..|+.++++||++++||+||+.|.++.|+..+...+ +.+ ++|+.|+|+. ..+++.++++.+.....
T Consensus 578 ~l~~I~~ai~~gR~~~~ni~k~i~~~~~~n~~~~~~~~~~~l--~~~~~l~~~~il~~~l~~d~~~~~l~~~~~ 649 (755)
T TIGR01647 578 GLSVIVDAILESRKIFQRMKSYVIYRIAETIRIVFFFGLLIL--ILNFYFPPIMVVIIAILNDGTIMTIAYDNV 649 (755)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCcchhHHHHHHHHHHHhHhHhhccCCCC
Confidence 99999999999999999999999999999997654322 222 1233478854 44555555555555544
No 9
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=8.4e-91 Score=808.81 Aligned_cols=496 Identities=26% Similarity=0.373 Sum_probs=426.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecce
Q 002427 332 TFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS 410 (924)
Q Consensus 332 ~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~ 410 (924)
+.+++|.|+|.++++|+++++++|.++.|+ +++++. ||| ++++|++++|+|||+|+|++||+||+||+|++|++
T Consensus 74 ~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~ 148 (673)
T PRK14010 74 LTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA 148 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce
Confidence 344689999999999999999999999986 776443 567 67899999999999999999999999999999999
Q ss_pred eeecccccCCCcceeccCC---CccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHH
Q 002427 411 YVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPI 487 (924)
Q Consensus 411 ~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (924)
.||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|.++|+.+++++++.+|+|+|.....+..
T Consensus 149 ~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~----- 223 (673)
T PRK14010 149 TVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLM----- 223 (673)
T ss_pred EEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHH-----
Confidence 9999999999999999999 88999999999999999999999999999999999999999999855443322
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHH
Q 002427 488 VVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 567 (924)
Q Consensus 488 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~l 567 (924)
.+.+.++.+++|++.... + ..+...+.+.+++++.++||+|+..+|+++..++.+++|+|+++|+++++
T Consensus 224 ~l~ii~l~~~~~~~~~~~------~-----~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~av 292 (673)
T PRK14010 224 TLTIIFLVVILTMYPLAK------F-----LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSV 292 (673)
T ss_pred HHhHHHHHHHHHHHHHHh------h-----ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHH
Confidence 222222222222221000 0 12344566777888888999999999999999999999999999999999
Q ss_pred HHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 002427 568 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHS 647 (924)
Q Consensus 568 E~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 647 (924)
|++|++|++|||||||||+|++.+.++.+.++.+.++++..++.++..++||+++|+++++++.++...
T Consensus 293 E~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~----------- 361 (673)
T PRK14010 293 ETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLP----------- 361 (673)
T ss_pred HHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCch-----------
Confidence 999999999999999999999888888776666677888888888889999999999999886542100
Q ss_pred cccCCCCcccccccceee-cCCeEEEEEcCeEEEEeeHhhHhh----cCCCCChhhhHHHHHHHHcCCeEEEEEECCeEE
Q 002427 648 KESTGSGWLLDVSDFSAL-PGRGIQCFISGKQVLVGNRKLLNE----SGITIPDHVESFVVELEESARTGILVAYDDNLI 722 (924)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~-~g~gv~~~~~g~~~~ig~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~l 722 (924)
....+..+|++. .+.|+. ++|+.+.+|+++++.+ .+...+.++.+..++++++|+++++++.|++++
T Consensus 362 ------~~~~~~~pF~~~~k~~gv~--~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~l 433 (673)
T PRK14010 362 ------QEVGEYIPFTAETRMSGVK--FTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEIL 433 (673)
T ss_pred ------hhhcceeccccccceeEEE--ECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEE
Confidence 000112345443 245553 5788889999998753 233445556666778889999999999999999
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCc
Q 002427 723 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGI 802 (924)
Q Consensus 723 G~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~ 802 (924)
|+++++|++|||++++|++||++||+++|+||||+.||.+||+++||+++|||++||||.++|+.+|++|+.|+|+|||+
T Consensus 434 G~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGv 513 (673)
T PRK14010 434 GVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDGT 513 (673)
T ss_pred EEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 803 NDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVI 867 (924)
Q Consensus 803 nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~ 867 (924)
||+|||++||||||||+|+|+|+++||+||++|||++|++++++||+++.|+++.+.|.+.-|+.
T Consensus 514 NDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 514 NDAPALAEANVGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred hhHHHHHhCCEEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999988873
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=7.8e-90 Score=801.44 Aligned_cols=517 Identities=27% Similarity=0.386 Sum_probs=437.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEE
Q 002427 327 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 405 (924)
Q Consensus 327 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~v 405 (924)
.+.+++.+++++++|.++++|+++.+++|.++.|+ +++++ |+|+ .+++|++++|+|||+|+|++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 44555667899999999999999999999999886 68888 5552 368899999999999999999999999999
Q ss_pred EecceeeecccccCCCcceeccCCCc---cccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 002427 406 VWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 482 (924)
Q Consensus 406 l~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 482 (924)
++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|.++|+.+++++++.+|+|+|...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999987777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCcccc
Q 002427 483 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 562 (924)
Q Consensus 483 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk 562 (924)
.+..+++++.+..+.++++.+ .. .++.+++++++++|||+|+.++|.....++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g--------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSG--------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhC--------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 555433332222222111110 12 26788899999999999999999999999999999999999
Q ss_pred CchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhc-CCCCCCCCCC
Q 002427 563 GGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHF-HFFDDPSLNP 641 (924)
Q Consensus 563 ~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~-~~~~~~~~~~ 641 (924)
+++++|++|++|++|||||||||+|+|.+.++++.++.+.++++.+++.++..++||.++|+++++++. +....
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~----- 362 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRER----- 362 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCch-----
Confidence 999999999999999999999999999999999888888888999999999999999999999998762 21000
Q ss_pred CCCCCccccCCCCcccccccceeecC-CeEEEEEcCeEEEEeeHhhH----hhcCCCCChhhhHHHHHHHHcCCeEEEEE
Q 002427 642 DGQSHSKESTGSGWLLDVSDFSALPG-RGIQCFISGKQVLVGNRKLL----NESGITIPDHVESFVVELEESARTGILVA 716 (924)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~gv~~~~~g~~~~ig~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~i~va 716 (924)
.. .....+..+|++..+ .|+ .++|+.+.+|+++.+ .+.+...++++.+..++++++|.++++++
T Consensus 363 ------~~---~~~~~~~~pF~s~~~~~gv--~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va 431 (679)
T PRK01122 363 ------DL---QSLHATFVPFSAQTRMSGV--DLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVA 431 (679)
T ss_pred ------hh---ccccceeEeecCcCceEEE--EECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEE
Confidence 00 000122345555433 232 357889999999644 44555667677777788899999999999
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEE
Q 002427 717 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVA 796 (924)
Q Consensus 717 ~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~ 796 (924)
+|++++|+++++|++|||++++|++||++||+++|+||||+.||.+||+++||++++||++||||.++|+.+|++|+.|+
T Consensus 432 ~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 432 EDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 002427 797 MVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV-----IAIPI 871 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~-----~~i~~ 871 (924)
|+|||+||+|||++||||||||+|+|+|+++||+|+++|||++|++++++||++.-+--.--.|++. |- ..+|.
T Consensus 512 MtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~-n~~~~~~~i~p~ 590 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA-NDVAKYFAIIPA 590 (679)
T ss_pred EECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998443333445544 43 34454
Q ss_pred HhhhhccccC
Q 002427 872 AAGVFFPSLG 881 (924)
Q Consensus 872 a~g~~~~~~g 881 (924)
.+...+|-++
T Consensus 591 ~~~~~~~~~~ 600 (679)
T PRK01122 591 MFAATYPQLN 600 (679)
T ss_pred HHHhhCcccc
Confidence 4455566444
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=2.6e-88 Score=825.31 Aligned_cols=515 Identities=23% Similarity=0.280 Sum_probs=436.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCce---eeEEEEeCCCCCCCCEEEECCCCcc
Q 002427 323 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC---IEEREIDALLIQSGDTLKVLPGTKL 399 (924)
Q Consensus 323 ~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~---~~~~~i~~~~l~~GDii~v~~G~~i 399 (924)
|. .+++++++++++.+++.++++|+.+.+++|.++.|.+++|+ |||+. .++++|++++|+|||+|.|++||+|
T Consensus 122 ~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~I 197 (902)
T PRK10517 122 LF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMI 197 (902)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCCeEEEEEHHhCCCCCEEEECCCCEE
Confidence 44 45677788889999999999999999999999999999998 45210 1578999999999999999999999
Q ss_pred cceEEEEecce-eeecccccCCCcceeccCCC-------------ccccceeeecceEEEEEEEecChhHHHHHHHHHHH
Q 002427 400 PADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVET 465 (924)
Q Consensus 400 P~Dg~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 465 (924)
||||+|++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|+|.+++++
T Consensus 198 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~ 277 (902)
T PRK10517 198 PADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSE 277 (902)
T ss_pred eeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhc
Confidence 99999999975 79999999999999998874 69999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHH
Q 002427 466 AQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 545 (924)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~ 545 (924)
++.+++|+|+.++++++++++++++++.++++++.+.. .+|..++.+++++++++|||+||+++++
T Consensus 278 ~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt~ 343 (902)
T PRK10517 278 QDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVTS 343 (902)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88899999999999999999988888887776654321 3577889999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHh---cCCCChHHH
Q 002427 546 AVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAE---ASSEHPLAK 622 (924)
Q Consensus 546 ~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~---~~s~hp~~~ 622 (924)
+++.+..+|+|+|+++|+++++|++|++|+||||||||||+|+|+|.++....+.+.++++.+++..+ ....||++.
T Consensus 344 ~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~ 423 (902)
T PRK10517 344 TLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDT 423 (902)
T ss_pred HHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999876555555667777655422 335899999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEc---Ce--EEEEeeHhhHhhcCC-----
Q 002427 623 AVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS---GK--QVLVGNRKLLNESGI----- 692 (924)
Q Consensus 623 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~---g~--~~~ig~~~~~~~~~~----- 692 (924)
|+++++........ . . ........+|++.. ++..+.++ +. .+..|+++.+.+.+.
T Consensus 424 All~~a~~~~~~~~----~-------~---~~~~~~~~pFds~~-k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~ 488 (902)
T PRK10517 424 AVLEGVDEESARSL----A-------S---RWQKIDEIPFDFER-RRMSVVVAENTEHHQLICKGALEEILNVCSQVRHN 488 (902)
T ss_pred HHHHHHHhcchhhh----h-------h---cCceEEEeeeCCCc-ceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcC
Confidence 99998765310000 0 0 00011122333332 22332221 21 345677776554322
Q ss_pred ----CCCh----hhhHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCe
Q 002427 693 ----TIPD----HVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR 748 (924)
Q Consensus 693 ----~~~~----~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~ 748 (924)
++.+ .+.+..++++.+|+|++++|+ |++++|+++|+||+||+++++|++||++||+
T Consensus 489 ~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~ 568 (902)
T PRK10517 489 GEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVT 568 (902)
T ss_pred CCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCE
Confidence 1222 233445677889999999996 4689999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcC
Q 002427 749 PVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGIN 803 (924)
Q Consensus 749 v~mlTGD~~~ta~~iA~~~gi~-------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~n 803 (924)
++|+||||+.||.+||+++||. ++|||++|+||.++|+.||++|+.|+|+|||+|
T Consensus 569 v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvN 648 (902)
T PRK10517 569 VKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGIN 648 (902)
T ss_pred EEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 9999999999999999999997 799999999999999999999999999999999
Q ss_pred CHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 804 DSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 870 (924)
Q Consensus 804 D~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~ 870 (924)
|+|||++||||||||+|+|+|+++||+||++|||..|+.++++||++++||++++.|.++.|+..+.
T Consensus 649 DaPALk~ADVGIAmg~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~ 715 (902)
T PRK10517 649 DAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVF 715 (902)
T ss_pred hHHHHHhCCEEEEeCCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986554
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=5.6e-88 Score=823.70 Aligned_cols=512 Identities=21% Similarity=0.290 Sum_probs=434.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEe---cCCCceeeEEEEeCCCCCCCCEEEECCCCcccce
Q 002427 326 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVK---DKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 402 (924)
Q Consensus 326 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~---~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~D 402 (924)
.+++++++++++.+++.++++|+++++++|.++.+.+++|+++ +.|| ++++|++++|+|||+|.|++||+||||
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~VPaD 166 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNG---SMDEVPIDALVPGDLIELAAGDIIPAD 166 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCC---eEEEEEhhcCCCCCEEEECCCCEEccc
Confidence 3566677777888899999999999999999999999998831 0067 679999999999999999999999999
Q ss_pred EEEEecce-eeecccccCCCcceeccCCC-------------ccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhc
Q 002427 403 GIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 468 (924)
Q Consensus 403 g~vl~G~~-~Vdes~LTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 468 (924)
|+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.+++++ +.
T Consensus 167 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~ 245 (867)
T TIGR01524 167 ARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RR 245 (867)
T ss_pred EEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CC
Confidence 99999985 89999999999999998875 59999999999999999999999999999999988 77
Q ss_pred cCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHH
Q 002427 469 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 548 (924)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~ 548 (924)
+++|+|+.++++++++.+++++++.+++++|.+.. .+|..++.+++++++++|||+||+++|+++.
T Consensus 246 ~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la 311 (867)
T TIGR01524 246 GQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSSNLA 311 (867)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 78999999999999999999888888777665421 3577889999999999999999999999999
Q ss_pred HHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHH---HhcCCCChHHHHHH
Q 002427 549 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS---AEASSEHPLAKAVV 625 (924)
Q Consensus 549 ~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~s~hp~~~ai~ 625 (924)
.+..+|+|+|+++|+++++|+||++|+||||||||||+|+|+|.+++..++.+.++++.+++. .+..++||+++|++
T Consensus 312 ~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~ 391 (867)
T TIGR01524 312 KGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDHAVL 391 (867)
T ss_pred HHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999876665566777776653 22345799999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEcC-----eEEEEeeHhhHhhcCC--------
Q 002427 626 EYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG-----KQVLVGNRKLLNESGI-------- 692 (924)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~g-----~~~~ig~~~~~~~~~~-------- 692 (924)
+++.+...... .. ........+|++. +++..+.+++ ..+..|+++.+.+.+.
T Consensus 392 ~~~~~~~~~~~-----------~~---~~~~~~~~pF~s~-~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~ 456 (867)
T TIGR01524 392 AKLDESAARQT-----------AS---RWKKVDEIPFDFD-RRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAV 456 (867)
T ss_pred HHHHhhchhhH-----------hh---cCceEEEeccCCC-cCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCce
Confidence 98865310000 00 0001112234443 2444444432 1356688877654332
Q ss_pred -CCC----hhhhHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE
Q 002427 693 -TIP----DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM 751 (924)
Q Consensus 693 -~~~----~~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~m 751 (924)
.++ +.+.+..++++.+|+|++++|+ |++++|+++|+||+|||++++|++||++||+++|
T Consensus 457 ~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvm 536 (867)
T TIGR01524 457 VTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKV 536 (867)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEE
Confidence 121 2344556678889999999998 2379999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHH
Q 002427 752 VTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 806 (924)
Q Consensus 752 lTGD~~~ta~~iA~~~gi~-------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~ 806 (924)
+||||+.||.+||+++||. ++|||++|+||.++|+.||++|+.|+|+|||+||+|
T Consensus 537 iTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDap 616 (867)
T TIGR01524 537 LTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAP 616 (867)
T ss_pred EcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHH
Confidence 9999999999999999998 799999999999999999999999999999999999
Q ss_pred HHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 807 ALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 870 (924)
Q Consensus 807 al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~ 870 (924)
||++||||||||+|+|+|+++||+||++|||+.|+.++++||++++||+||+.|.+..|+..+.
T Consensus 617 ALk~AdVGIAmg~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~ 680 (867)
T TIGR01524 617 ALRKADVGISVDTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVF 680 (867)
T ss_pred HHHhCCEEEEeCCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988775443
No 13
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=5.1e-87 Score=775.70 Aligned_cols=521 Identities=28% Similarity=0.402 Sum_probs=440.0
Q ss_pred chhhhHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCe-EEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCc
Q 002427 322 TYFETSAM--LITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 398 (924)
Q Consensus 322 ~~~~~~~~--li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~ 398 (924)
.||+.++. +++.+++++++|.++++|+++++++|.++.|++ +++++ +|| ++++|++++|+|||+|+|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 46765433 334467999999999999999999999998875 76763 356 57899999999999999999999
Q ss_pred ccceEEEEecceeeecccccCCCcceeccCCCc---cccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHH
Q 002427 399 LPADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 475 (924)
Q Consensus 399 iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 475 (924)
||+||+|++|++.||||+|||||.|+.|++|+. ||+||.+.+|+++++|+++|.+|.++|+.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999975 99999999999999999999999999999999999999999997
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q 002427 476 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 555 (924)
Q Consensus 476 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~ 555 (924)
..+.+..++. ++++++. +.+|.+..+ . ....++.+++++++++|||+|+...|.....++.+++
T Consensus 218 ~l~~l~~~l~-~v~li~~--~~~~~~~~~-~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALT-LVFLLVT--ATLWPFAAY-G------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHH-HHHHHHH--HHHHHHHHh-c------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 7766655443 3332222 223332211 0 1123577789999999999999888988889999999
Q ss_pred hcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCC
Q 002427 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFD 635 (924)
Q Consensus 556 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~ 635 (924)
|+|+++|+++++|++|++|++|||||||||+|+|++.++++.++.+.++++.+++.++..++||.++|+++++++.+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999988777788889999999999999999999999988754211
Q ss_pred CCCCCCCCCCCccccCCCCcccccccceeecCCeEEE--EEcCeEEEEeeHhhH----hhcCCCCChhhhHHHHHHHHcC
Q 002427 636 DPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC--FISGKQVLVGNRKLL----NESGITIPDHVESFVVELEESA 709 (924)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~--~~~g~~~~ig~~~~~----~~~~~~~~~~~~~~~~~~~~~g 709 (924)
.. . .....+..+|+... ++.+ ..+|+.+.+|+++.+ .+.+...|.++.+..++++++|
T Consensus 362 ~~------~--------~~~~~~~~pf~~~~--~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G 425 (675)
T TIGR01497 362 DD------V--------QSLHATFVEFTAQT--RMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQG 425 (675)
T ss_pred cc------c--------ccccceEEEEcCCC--cEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCC
Confidence 00 0 00012233444432 3333 247889999999554 4555666777777788889999
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHh
Q 002427 710 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQ 789 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq 789 (924)
.|++++++|++++|+++++|++|||++++|++||++|++++|+||||..+|.++|+++||++++++++|+||.++|+.+|
T Consensus 426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq 505 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQ 505 (675)
T ss_pred CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002427 790 KDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV--- 866 (924)
Q Consensus 790 ~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~--- 866 (924)
++|+.|+|+|||+||+|||++|||||||++|++.++++||++++++||++|++++++||+++-+...-..|++.-++
T Consensus 506 ~~g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~~~~ 585 (675)
T TIGR01497 506 AEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDVAKY 585 (675)
T ss_pred HcCCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777778765443
Q ss_pred -HHHHHHhhhhccc
Q 002427 867 -IAIPIAAGVFFPS 879 (924)
Q Consensus 867 -~~i~~a~g~~~~~ 879 (924)
..+|..+...+|-
T Consensus 586 ~~~~~~~~~~~~~~ 599 (675)
T TIGR01497 586 FAIIPAIFAAAYPQ 599 (675)
T ss_pred HHHHHHHHHhhCcc
Confidence 3445444434553
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.6e-87 Score=819.88 Aligned_cols=515 Identities=23% Similarity=0.311 Sum_probs=429.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCc---eeeEEEEeCCCCCCCCEEEECCCCc
Q 002427 322 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGK---CIEEREIDALLIQSGDTLKVLPGTK 398 (924)
Q Consensus 322 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~---~~~~~~i~~~~l~~GDii~v~~G~~ 398 (924)
.|.+ +++++++++++.+++.++++|+++++++|.++.|.+++|+ |||+ ..++++|++++|+|||+|.|++||+
T Consensus 110 ~~~~-~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLTG-VIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEPVRREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCCeEEEEEHHHCCCCCEEEECCCCE
Confidence 3554 5667777888999999999999999999999999999988 4421 0157899999999999999999999
Q ss_pred ccceEEEEecce-eeecccccCCCcceeccC-----------------------CCccccceeeecceEEEEEEEecChh
Q 002427 399 LPADGIVVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDA 454 (924)
Q Consensus 399 iP~Dg~vl~G~~-~Vdes~LTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~v~~~g~~t 454 (924)
|||||+|++|+. .||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|+++|.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 999999999986 799999999999999975 26799999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh
Q 002427 455 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 534 (924)
Q Consensus 455 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~ 534 (924)
.+|+|.+++.+ ...++|+|+..+++.+++..+.+.++.+++++.++. ..+|..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~--------------~~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT--------------KGDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------------cCCHHHHHHHHHHHHHHH
Confidence 99999999987 556789999999999888777666555554432221 135788999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHH--
Q 002427 535 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA-- 612 (924)
Q Consensus 535 ~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~-- 612 (924)
|||+||+++|++++.+..+|+|+|+++|+++++|+||++|+||||||||||+|+|.|.+++..++.++++++.+++..
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998876665566677666532
Q ss_pred -hcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCC-eEEEEE-cCeEE--EEeeHhhH
Q 002427 613 -EASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFI-SGKQV--LVGNRKLL 687 (924)
Q Consensus 613 -~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gv~~~~-~g~~~--~ig~~~~~ 687 (924)
+..+.||+++|+++++.+.+.... . . ........+|++..++ ++.... +|+.+ ..|+++.+
T Consensus 411 ~~~~~~~p~e~All~~a~~~~~~~~----~-------~---~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~i 476 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNPEIVK----P-------A---GYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEM 476 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcCchhh----h-------h---cCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHH
Confidence 334679999999999876532100 0 0 0001112234433332 111111 34443 34888765
Q ss_pred hhcCC---------CCChh----hhHHHHHHHHcCCeEEEEEE------------------CCeEEEEEEecCCCcHhHH
Q 002427 688 NESGI---------TIPDH----VESFVVELEESARTGILVAY------------------DDNLIGVMGIADPVKREAA 736 (924)
Q Consensus 688 ~~~~~---------~~~~~----~~~~~~~~~~~g~~~i~va~------------------~~~~lG~i~l~D~lr~~~~ 736 (924)
.+.+. +++++ +.+..++++.+|+|++++|+ |++|+|+++|+||+|||++
T Consensus 477 l~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~ 556 (903)
T PRK15122 477 LAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAA 556 (903)
T ss_pred HHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHH
Confidence 44321 22222 33445677889999999996 3489999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------eEEeccChhhHHHHHHHHhhC
Q 002427 737 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------------DVMADVMPAGKADAVRSFQKD 791 (924)
Q Consensus 737 ~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~-------------------------~v~a~~~P~~K~~~V~~lq~~ 791 (924)
++|++||++||+++|+||||+.||.+||+++||. ++|||++|+||.++|+.||++
T Consensus 557 ~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~ 636 (903)
T PRK15122 557 PAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQAN 636 (903)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997 799999999999999999999
Q ss_pred CCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 792 GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAI 869 (924)
Q Consensus 792 g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i 869 (924)
|+.|+|+|||+||+|||++||||||||+|+|+|+++||+||++|||+.|+.++++||++++||++++.|.+..|+..+
T Consensus 637 G~vVamtGDGvNDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~ 714 (903)
T PRK15122 637 GHTVGFLGDGINDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNV 714 (903)
T ss_pred CCEEEEECCCchhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987554
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=5.3e-85 Score=807.64 Aligned_cols=563 Identities=24% Similarity=0.332 Sum_probs=436.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc-CCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCccc
Q 002427 322 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 400 (924)
Q Consensus 322 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~-~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP 400 (924)
.|++..+ +++.+++.-.+..+++.++++.+++|.+. .+.+++|+ ||| ++++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~~~~-il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEGVA-ILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEec
Confidence 4555433 33333333445555555666667777653 46678888 778 6799999999999999999999999
Q ss_pred ceEEEEec-ceeeecccccCCCcceeccCCCc--cccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHH
Q 002427 401 ADGIVVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 477 (924)
Q Consensus 401 ~Dg~vl~G-~~~Vdes~LTGEs~pv~k~~g~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 477 (924)
|||+|++| ++.||||+|||||.|+.|.+|+. +|+||.+.+|.++++|+++|.+|.+||+.+++++++ +++|+|+..
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78999999999999999998877 999999999999999999999999999999998765 578999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q 002427 478 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ--WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 555 (924)
Q Consensus 478 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~ 555 (924)
+++++++.+++++++++.|++|++.......... .......++..++.+++++++++|||+|++++|+++..++.+|+
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999998888888776542211100000 00001235778899999999999999999999999999999999
Q ss_pred hcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCC----------C--HHHHHHHHHHHhc---------
Q 002427 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM----------D--RGEFLTLVASAEA--------- 614 (924)
Q Consensus 556 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~----------~--~~~~l~~~~~~~~--------- 614 (924)
|+|+++|+++++|+||++|+||||||||||+|+|++.+++..+.. + ..+++..+..+..
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 999999999999999999999999999999999999998764321 0 1112222222111
Q ss_pred ----CCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeec-CCeEEEEEcCe---EEEEeeHhh
Q 002427 615 ----SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALP-GRGIQCFISGK---QVLVGNRKL 686 (924)
Q Consensus 615 ----~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~gv~~~~~g~---~~~ig~~~~ 686 (924)
...+|++.|+++++.+.+..... .. .........+|++.. ++++....++. .+..|+++.
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~---------~~---~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~ 506 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQE---------VR---AEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEI 506 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHH---------HH---hhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHH
Confidence 12468889999998765321000 00 001112334555432 33444333322 233455554
Q ss_pred Hhhc--------CCC--CC---hhhhHHHHHHHHcCCeEEEEEE----------------CCeEEEEEEecCCCcHhHHH
Q 002427 687 LNES--------GIT--IP---DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAV 737 (924)
Q Consensus 687 ~~~~--------~~~--~~---~~~~~~~~~~~~~g~~~i~va~----------------~~~~lG~i~l~D~lr~~~~~ 737 (924)
+... +.. .+ +++.+..++++.+|+|++++|+ |++|+|+++++||+||++++
T Consensus 507 il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~ 586 (941)
T TIGR01517 507 VLKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVRE 586 (941)
T ss_pred HHHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHH
Confidence 4332 221 11 2345566778899999999997 34899999999999999999
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------eEEeccChhhHHHHHHHHhh
Q 002427 738 VVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQK 790 (924)
Q Consensus 738 ~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~---------------------------~v~a~~~P~~K~~~V~~lq~ 790 (924)
+|++||++||+++|+||||+.||.++|+++||. .+|||++|+||.++|+.||+
T Consensus 587 aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~ 666 (941)
T TIGR01517 587 AVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKD 666 (941)
T ss_pred HHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 69999999999999999999
Q ss_pred CCCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 791 DGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAI 869 (924)
Q Consensus 791 ~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i 869 (924)
+|+.|+|+|||+||+|||++|||||||| +|+|+|+++||++|++|+|++|++++++||+++++|++|+.|++++|+..+
T Consensus 667 ~g~vVam~GDGvNDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i 746 (941)
T TIGR01517 667 MGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAV 746 (941)
T ss_pred CCCEEEEECCCCchHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-hhhccccCCCccHHHHHHHhhhhhHhHhhhccccc
Q 002427 870 PIAA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 908 (924)
Q Consensus 870 ~~a~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~ 908 (924)
++++ |.++ +. -.|+-+.-+....-+...+.++-|.
T Consensus 747 ~~~~~~~~~---~~-~~pl~~~qil~inl~~d~~~al~l~ 782 (941)
T TIGR01517 747 ILTFVGSCI---SS-TSPLTAVQLLWVNLIMDTLAALALA 782 (941)
T ss_pred HHHHHHHHH---hc-cccHHHHHHHHHHHHHHHhhHHHHc
Confidence 8765 3322 11 1344444444445555555555553
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=4.5e-84 Score=794.66 Aligned_cols=535 Identities=24% Similarity=0.344 Sum_probs=427.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecc-eeeec
Q 002427 336 FGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT-SYVNE 414 (924)
Q Consensus 336 ~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~-~~Vde 414 (924)
+.-.+..++++|+++.+++|.++.|.+++|+ ||| ++++|+++||+|||+|.|++||+|||||+|++|+ ..|||
T Consensus 92 ~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDE 165 (884)
T TIGR01522 92 IVVTVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDE 165 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEc
Confidence 3344555556678889999999999999998 778 6799999999999999999999999999999996 68999
Q ss_pred ccccCCCcceeccCCC--------------ccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHH
Q 002427 415 SMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFV 480 (924)
Q Consensus 415 s~LTGEs~pv~k~~g~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~ 480 (924)
|+|||||.|+.|.+++ .+|+||.+.+|.++++|+++|.+|.+|+|.+++++++.+++|+|+.++++
T Consensus 166 S~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l 245 (884)
T TIGR01522 166 SNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLL 245 (884)
T ss_pred ccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHH
Confidence 9999999999998864 79999999999999999999999999999999999888999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCcc
Q 002427 481 ASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVL 560 (924)
Q Consensus 481 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gil 560 (924)
+.++++++++++++.++++++. ..+|..++.+++++++++|||+||+++|+++..++++|+|+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~il 311 (884)
T TIGR01522 246 GKQLSLVSFGVIGVICLVGWFQ--------------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAI 311 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999887766555554443322 13577899999999999999999999999999999999999999
Q ss_pred ccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCC----------------------------HHHHHHHHHHH
Q 002427 561 IKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD----------------------------RGEFLTLVASA 612 (924)
Q Consensus 561 vk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~----------------------------~~~~l~~~~~~ 612 (924)
+|+++++|+||++|+||||||||||+|+|+|.+++..++.. ..+++..++.+
T Consensus 312 vk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (884)
T TIGR01522 312 VRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLC 391 (884)
T ss_pred ccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999987643210 12333333322
Q ss_pred hcC---------CCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCC-eEEEEE--cCe--E
Q 002427 613 EAS---------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFI--SGK--Q 678 (924)
Q Consensus 613 ~~~---------s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gv~~~~--~g~--~ 678 (924)
... ..+|+++|+++++++.+...... ........+|++..++ ++.+.. +|+ .
T Consensus 392 ~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~--------------~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~ 457 (884)
T TIGR01522 392 NNAKFRNEADTLLGNPTDVALIELLMKFGLDDLRE--------------TYIRVAEVPFSSERKWMAVKCVHRQDRSEMC 457 (884)
T ss_pred CCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHHh--------------hCcEEeEeCCCCCCCeEEEEEEEcCCCeEEE
Confidence 211 13599999999988764310000 0001122233332221 111111 121 2
Q ss_pred EEEeeHhhHhhc--------CC--CCCh----hhhHHHHHHHHcCCeEEEEEECC-----eEEEEEEecCCCcHhHHHHH
Q 002427 679 VLVGNRKLLNES--------GI--TIPD----HVESFVVELEESARTGILVAYDD-----NLIGVMGIADPVKREAAVVV 739 (924)
Q Consensus 679 ~~ig~~~~~~~~--------~~--~~~~----~~~~~~~~~~~~g~~~i~va~~~-----~~lG~i~l~D~lr~~~~~~I 739 (924)
+..|+++.+... +. ++++ .+.+..++++.+|+|++++|++. +++|+++++||+||+++++|
T Consensus 458 ~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i 537 (884)
T TIGR01522 458 FMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAV 537 (884)
T ss_pred EEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHH
Confidence 233555443322 22 1222 23445567888999999999865 89999999999999999999
Q ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------eEEeccChhhHHHHHHHHhhCC
Q 002427 740 EGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQKDG 792 (924)
Q Consensus 740 ~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~---------------------------~v~a~~~P~~K~~~V~~lq~~g 792 (924)
+.||++|++++|+|||++.||.++|+++||. .+|||++|+||.++|+.+|++|
T Consensus 538 ~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g 617 (884)
T TIGR01522 538 TTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRG 617 (884)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999997 5999999999999999999999
Q ss_pred CEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 793 SIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPI 871 (924)
Q Consensus 793 ~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~ 871 (924)
+.|+|+|||+||+|||++|||||+|| +|+++++++||++|++|+|+.++.++++||++++||++|+.|+++.|+..+.+
T Consensus 618 ~~v~mvGDGvND~pAl~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~~~~ 697 (884)
T TIGR01522 618 DVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSL 697 (884)
T ss_pred CEEEEECCCcccHHHHHhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999 79999999999999999999999999999999999999999999999987765
Q ss_pred Hh-hhhccccCCCccHHHHHHHhhhhhHhHhhhccccc
Q 002427 872 AA-GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 908 (924)
Q Consensus 872 a~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~ 908 (924)
.+ +.++ +. ..|+.+.-+..+.-+...+.++-|.
T Consensus 698 ~~~~~~~---~~-~~pl~~~qiL~inl~~d~~~a~~l~ 731 (884)
T TIGR01522 698 IALATLM---GF-PNPLNAMQILWINILMDGPPAQSLG 731 (884)
T ss_pred HHHHHHH---cC-CCchhHHHHHHHHHHHHhhHHHHhc
Confidence 43 2222 21 1344444444444445555544443
No 17
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-85 Score=729.00 Aligned_cols=604 Identities=25% Similarity=0.357 Sum_probs=479.7
Q ss_pred CHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHH--HHHHHHHHHhhhHHH
Q 002427 273 GKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVL--FGKYLEILAKGKTSD 350 (924)
Q Consensus 273 g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~le~~~~~k~~~ 350 (924)
+..|++-.|++++.. +|+.|.+.+ ++++.+++..++..++|++.+++++.+++ +-..+.+|.+.++-+
T Consensus 142 ~K~Fl~fvweA~qD~-----TLiIL~vaA-----vvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~ 211 (1034)
T KOG0204|consen 142 PKGFLRFVWEALQDV-----TLIILMVAA-----VVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFR 211 (1034)
T ss_pred CccHHHHHHHHhccc-----hHHHHHHHH-----HHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhh
Confidence 345666778888875 455554322 22334455555666789998887766442 334455665555555
Q ss_pred HHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecce-eeecccccCCCcceeccC-
Q 002427 351 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS-YVNESMVTGEAVPVLKEI- 428 (924)
Q Consensus 351 ~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~-~Vdes~LTGEs~pv~k~~- 428 (924)
.+++-. ...+..|+ ||| +.++|++.||+||||+.++.||.+||||++++|+. .+|||++||||.++.|.+
T Consensus 212 ~L~~~k--~~~k~~Vi---R~G---~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~ 283 (1034)
T KOG0204|consen 212 KLQKEK--RNIKFQVI---RGG---RRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLD 283 (1034)
T ss_pred hhhhhh--hceEEEEE---ECC---EEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCC
Confidence 555322 23345566 788 67999999999999999999999999999999976 599999999999999977
Q ss_pred -CCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC
Q 002427 429 -NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA 507 (924)
Q Consensus 429 -g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~ 507 (924)
+..+++||.+.+|.+++.||.+|.+|..|++..++.+....++|+|-..++++.....+.+++|.+++++....+....
T Consensus 284 ~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~ 363 (1034)
T KOG0204|consen 284 KDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGK 363 (1034)
T ss_pred CCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 4568999999999999999999999999999999999888999999999999999888888888888877555433322
Q ss_pred CC------CcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCC
Q 002427 508 YP------EQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKT 581 (924)
Q Consensus 508 ~~------~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKT 581 (924)
+. ..|.+.....|...|..+++++++|+|++||+|+++++++++++|.+.+.++|+.+++|++|..++||+|||
T Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKT 443 (1034)
T KOG0204|consen 364 TKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKT 443 (1034)
T ss_pred eecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCc
Confidence 21 244444456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCceEEEEEEecCCCCH----------HHHHHHH-HHH-----------------hcCCCChHHHHHHHHHHhcCC
Q 002427 582 GTLTQGRATVTTAKVFTKMDR----------GEFLTLV-ASA-----------------EASSEHPLAKAVVEYARHFHF 633 (924)
Q Consensus 582 GTLT~~~~~v~~~~~~~~~~~----------~~~l~~~-~~~-----------------~~~s~hp~~~ai~~~~~~~~~ 633 (924)
||||+|+|.|.+.+..+.... ..+..+. ... .....+|.++|++.+...+|.
T Consensus 444 GTLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~ 523 (1034)
T KOG0204|consen 444 GTLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGM 523 (1034)
T ss_pred CceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCc
Confidence 999999999999876543211 1122221 111 123467999999999987653
Q ss_pred CCCCCCCCCCCCCccccCCCCcccccccceeecCC-eEE---------EEEcCe-EEEEeeHhhH-hhcCC--CCC----
Q 002427 634 FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQ---------CFISGK-QVLVGNRKLL-NESGI--TIP---- 695 (924)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gv~---------~~~~g~-~~~ig~~~~~-~~~~~--~~~---- 695 (924)
.-+ .. +....+.++.+|.+..++ |+. +++||. ++.+.+++.+ ..+|. ++.
T Consensus 524 ~~~------~~------R~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~ 591 (1034)
T KOG0204|consen 524 DFQ------DV------RPEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDR 591 (1034)
T ss_pred chH------hh------cchhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHH
Confidence 100 00 012334566667665433 222 555554 2222222222 22222 111
Q ss_pred hhhhHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcC
Q 002427 696 DHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG 754 (924)
Q Consensus 696 ~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTG 754 (924)
..+++.++.++.+|.|++++|| +++++|+++++||.|||++++|+.|+++||+|.|+||
T Consensus 592 ~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTG 671 (1034)
T KOG0204|consen 592 KSFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTG 671 (1034)
T ss_pred HHHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeC
Confidence 2356678889999999999998 2379999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCc-----------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCH
Q 002427 755 DNWRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 805 (924)
Q Consensus 755 D~~~ta~~iA~~~gi~-----------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~ 805 (924)
||..||++||.+|||. +|+||.+|.||.-+|+.|+++|+.||.+|||.||+
T Consensus 672 DNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDa 751 (1034)
T KOG0204|consen 672 DNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDA 751 (1034)
T ss_pred CcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcCcEEEEecCCCCCc
Confidence 9999999999999995 49999999999999999999999999999999999
Q ss_pred HHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccCCC
Q 002427 806 PALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAA-GVFFPSLGIK 883 (924)
Q Consensus 806 ~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~-g~~~~~~g~~ 883 (924)
|||++||||.||| .||++|||+||+||++|||++|+++++|||..|.+|+++++|+++.|++++.+++ +... .|
T Consensus 752 PALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQFQLTVNVvAliv~fv~A~~--~~-- 827 (1034)
T KOG0204|consen 752 PALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQFQLTVNVVALIVNFVSACA--TG-- 827 (1034)
T ss_pred hhhhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhheeEEEEEEEeehhhhhhhhh--cC--
Confidence 9999999999999 8999999999999999999999999999999999999999999999999888775 2221 12
Q ss_pred ccHHHHHHHhhhhhHhHhhhccccccc
Q 002427 884 LPPWAAGACMALSSVSVVCSSLLLRRY 910 (924)
Q Consensus 884 l~p~~a~~~m~~ss~~v~~ns~~l~~~ 910 (924)
=.|+-|+-+....-|.-.|-||-|...
T Consensus 828 dsPLtAVQlLWVNLIMDTLgALALATe 854 (1034)
T KOG0204|consen 828 DSPLTAVQLLWVNLIMDTLGALALATE 854 (1034)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 378999999999999999999988754
No 18
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-84 Score=722.25 Aligned_cols=530 Identities=26% Similarity=0.378 Sum_probs=417.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEE
Q 002427 326 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 405 (924)
Q Consensus 326 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~v 405 (924)
.+..+.+.+.+.-.+..++++|+.+++++|.++.|..++|+ |+| ..+.+++.+|+|||||.++-||+||||.++
T Consensus 80 e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPADlRl 153 (972)
T KOG0202|consen 80 EPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPADLRL 153 (972)
T ss_pred cceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccceeE
Confidence 33333344444444455566678899999999999999999 777 468999999999999999999999999999
Q ss_pred Eeccee-eecccccCCCcceeccC--------------CCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccC
Q 002427 406 VWGTSY-VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSK 470 (924)
Q Consensus 406 l~G~~~-Vdes~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~ 470 (924)
++-..+ ||||+|||||.|+.|.. .+.+|+||.+..|.+++.|+.||.+|.+|+|.+.+++.+..|
T Consensus 154 ~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~k 233 (972)
T KOG0202|consen 154 IEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPK 233 (972)
T ss_pred EeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCC
Confidence 997664 99999999999999943 246899999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC--CCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHH
Q 002427 471 APIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLG--AYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 548 (924)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~ 548 (924)
+|+|+..|.+.+.+..++.++++.+++.- .+++. .....|+ ..+...|.+++++.+.++|++||..+++.++
T Consensus 234 TPLqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~tLA 307 (972)
T KOG0202|consen 234 TPLQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTTLA 307 (972)
T ss_pred CcHHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhhHH
Confidence 99999999999998866665555554431 22211 0001122 3466788999999999999999999999999
Q ss_pred HHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCC----------------------------
Q 002427 549 VATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM---------------------------- 600 (924)
Q Consensus 549 ~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~---------------------------- 600 (924)
.+..+|+|++++||...++|+||.+++||+|||||||+|+|.+.+++..+..
T Consensus 308 LG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~ 387 (972)
T KOG0202|consen 308 LGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLYEK 387 (972)
T ss_pred HhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCcccc
Confidence 9999999999999999999999999999999999999999999998764321
Q ss_pred ----CHHHH---HHHHHH-----HhcC-------CCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCccc----
Q 002427 601 ----DRGEF---LTLVAS-----AEAS-------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLL---- 657 (924)
Q Consensus 601 ----~~~~~---l~~~~~-----~~~~-------s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 657 (924)
..+.+ +.+++. .+.+ -..|.+.|+...+++.++.+.........+ ....+.+..
T Consensus 388 ~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~---~~~c~~~~~~~~~ 464 (972)
T KOG0202|consen 388 DKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEE---ASACNRVYSRLFK 464 (972)
T ss_pred ccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccc---cccchhHHHHhhh
Confidence 01112 222221 1211 356999999999999877654311110000 000010000
Q ss_pred --ccccceeecC-CeEEEEE-cC----eEEEEeeHhhHhhcC-----------CCCC----hhhhHHHHHHHHcCCeEEE
Q 002427 658 --DVSDFSALPG-RGIQCFI-SG----KQVLVGNRKLLNESG-----------ITIP----DHVESFVVELEESARTGIL 714 (924)
Q Consensus 658 --~~~~~~~~~g-~gv~~~~-~g----~~~~ig~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~g~~~i~ 714 (924)
...+|++..+ +++.+.- +| .-+..|.++-+.+.+ .++. +.+.+...++..+|.|+++
T Consensus 465 ~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLa 544 (972)
T KOG0202|consen 465 KIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLA 544 (972)
T ss_pred heeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEE
Confidence 1123443322 1222221 11 123345554433322 1222 2234455677889999999
Q ss_pred EEE------------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 715 VAY------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 715 va~------------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
+|. |++|+|++++.||+|++++++|+.|+++||+|+|+||||+.||.+||+++||.
T Consensus 545 lA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 545 LASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred EEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 986 56899999999999999999999999999999999999999999999999995
Q ss_pred -------------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEec-
Q 002427 771 -------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG- 818 (924)
Q Consensus 771 -------------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~- 818 (924)
.+|+|++|++|.++|+.||++|..|+|+|||+||+||||.||+|||||
T Consensus 625 ~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~ 704 (972)
T KOG0202|consen 625 SEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGI 704 (972)
T ss_pred cCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecC
Confidence 399999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 819 AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 870 (924)
Q Consensus 819 ~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~ 870 (924)
+|+|+||++||+||.||||++|..++++||.+|+|||+++.|.+..|+..+.
T Consensus 705 ~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~ 756 (972)
T KOG0202|consen 705 SGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVV 756 (972)
T ss_pred CccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999996654
No 19
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-82 Score=776.44 Aligned_cols=543 Identities=27% Similarity=0.390 Sum_probs=441.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecce-ee
Q 002427 334 VLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS-YV 412 (924)
Q Consensus 334 ~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~-~V 412 (924)
+++...+...++.|+.+.+++|.++.+.++.|+ ||| ++++|++++|+|||+|++++||+||||++|+++++ .|
T Consensus 113 i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~V 186 (917)
T COG0474 113 VVINALLGFVQEYRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEV 186 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEEEecCceE
Confidence 333444445556677788888888889999999 788 68999999999999999999999999999999998 79
Q ss_pred ecccccCCCcceeccC--------------CCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHH
Q 002427 413 NESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFAD 478 (924)
Q Consensus 413 des~LTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~ 478 (924)
|||+|||||.|+.|.+ ++.+|+||.+.+|.+.+.|++||.+|.+|++.+++......++|+|+..+
T Consensus 187 dEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~ 266 (917)
T COG0474 187 DESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLN 266 (917)
T ss_pred EcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHH
Confidence 9999999999999953 46789999999999999999999999999999999988778999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcC
Q 002427 479 FVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNG 558 (924)
Q Consensus 479 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~g 558 (924)
++..++..+.+++++++|+..++.+. ..|..++.+++++++.++|.+||+.+.++++.+..+|+|++
T Consensus 267 ~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~ 333 (917)
T COG0474 267 KLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDN 333 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988887644321 22788999999999999999999999999999999999999
Q ss_pred ccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecC-CCCHH-----------HHHH---HHHHHhcC------CC
Q 002427 559 VLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-KMDRG-----------EFLT---LVASAEAS------SE 617 (924)
Q Consensus 559 ilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~-~~~~~-----------~~l~---~~~~~~~~------s~ 617 (924)
+++|+++++|+||++++||+|||||||+|+|+|.+++..+ ..+.+ +++. ++...... ..
T Consensus 334 ~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~g 413 (917)
T COG0474 334 AIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQAG 413 (917)
T ss_pred chhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCceecC
Confidence 9999999999999999999999999999999999999884 21111 1222 11111222 56
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCe-EEEEEc-Ce--EEEEeeHhhHhhcCC-
Q 002427 618 HPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG-IQCFIS-GK--QVLVGNRKLLNESGI- 692 (924)
Q Consensus 618 hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-v~~~~~-g~--~~~ig~~~~~~~~~~- 692 (924)
+|++.|+++++++.++.. ..... .....+....+|++..++. +....+ |+ -+..|+++.+.+.+.
T Consensus 414 dptE~Al~~~a~~~~~~~----~~~~~------~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~~ 483 (917)
T COG0474 414 DPTEGALVEFAEKLGFSL----DLSGL------EVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKS 483 (917)
T ss_pred CccHHHHHHHHHhcCCcC----CHHHH------hhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhcc
Confidence 999999999999876421 00000 0011234455676665543 222212 21 345688887754222
Q ss_pred -----CC----ChhhhHHHHHHHHcCCeEEEEEE-----------------CCeEEEEEEecCCCcHhHHHHHHHHHHCC
Q 002427 693 -----TI----PDHVESFVVELEESARTGILVAY-----------------DDNLIGVMGIADPVKREAAVVVEGLLKMG 746 (924)
Q Consensus 693 -----~~----~~~~~~~~~~~~~~g~~~i~va~-----------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~g 746 (924)
+. ++.+.+..++++++|+|++++|+ |+.|+|+++|+||||+|++++|+.|+++|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AG 563 (917)
T COG0474 484 IGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAG 563 (917)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHCC
Confidence 12 24456677889999999998886 36899999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHcCCc-----------------------------eEEeccChhhHHHHHHHHhhCCCEEEE
Q 002427 747 VRPVMVTGDNWRTAHAVAREIGIQ-----------------------------DVMADVMPAGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 747 i~v~mlTGD~~~ta~~iA~~~gi~-----------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~ 797 (924)
|++||+||||+.||++||++||+. .||||++|+||.++|+.||+.|+.|+|
T Consensus 564 I~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVam 643 (917)
T COG0474 564 IKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAM 643 (917)
T ss_pred CcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999974 399999999999999999999999999
Q ss_pred EcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Q 002427 798 VGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA-AGV 875 (924)
Q Consensus 798 vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a-~g~ 875 (924)
+|||+||+|||++|||||||| +|+|+++++||++++++++..+..++++||++|.|+++.+.|.+..|+..+... .+.
T Consensus 644 tGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~~ 723 (917)
T COG0474 644 TGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYS 723 (917)
T ss_pred eCCCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 699999999999999999999999999999999999999999999999855433 232
Q ss_pred hccccCCCccHHHHHHHhhhhhHhHhhhccccc
Q 002427 876 FFPSLGIKLPPWAAGACMALSSVSVVCSSLLLR 908 (924)
Q Consensus 876 ~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l~ 908 (924)
++ +....|+.+.-++...-+.-.+.++-|.
T Consensus 724 ~~---~~~~~p~~~~qll~inll~d~~pa~~L~ 753 (917)
T COG0474 724 LF---NLFFLPLTPLQLLWINLLTDSLPALALG 753 (917)
T ss_pred HH---hcccccHHHHHHHHHHHHHhhhhhheee
Confidence 22 1112345555444444444455444443
No 20
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=3.3e-81 Score=730.09 Aligned_cols=476 Identities=36% Similarity=0.545 Sum_probs=433.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHh--cCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEec
Q 002427 331 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 408 (924)
Q Consensus 331 i~~~~~~~~le~~~~~k~~~~l~~l~~--~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G 408 (924)
+++++++.+++.++++++.+.+++|.+ +.|.+++++ |+| +++|++++|+|||+|++++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 356678999999999999999999998 889999998 565 58899999999999999999999999999999
Q ss_pred ceeeecccccCCCcceeccCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHH-HhHHHH
Q 002427 409 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA-SIFVPI 487 (924)
Q Consensus 409 ~~~Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 487 (924)
++.||||+|||||.|+.|.+|+.+++||.+.+|.++++|+++|.+|..+++..++++++..++++++..+++. .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHH
Q 002427 488 VVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 567 (924)
Q Consensus 488 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~l 567 (924)
+++++++++++|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++||++|+++++
T Consensus 156 ~~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 999999998888654210 014778999999999999999999999999999999999999999999999
Q ss_pred HHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 002427 568 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHS 647 (924)
Q Consensus 568 E~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 647 (924)
|+||++|++|||||||||+|+|++.++++.+. +..++||+++|+++++++..
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~--------------- 276 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI--------------- 276 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC---------------
Confidence 99999999999999999999999999987543 56799999999999886421
Q ss_pred cccCCCCcccccccceeecCCeEEEEEcC--eEEEEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEE
Q 002427 648 KESTGSGWLLDVSDFSALPGRGIQCFISG--KQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVM 725 (924)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~g~gv~~~~~g--~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i 725 (924)
....+|++.+ +|+.+.+++ ..+.+|+++++.+.+.. +.+...++..+|.++++++++++++|++
T Consensus 277 ---------~~~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~~----~~~~~~~~~~~g~~~~~~a~~~~~~g~i 342 (499)
T TIGR01494 277 ---------LNVFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVKD----LEEKVKELAQSGLRVLAVASKETLLGLL 342 (499)
T ss_pred ---------cceeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhHH----HHHHHHHHHhCCCEEEEEEECCeEEEEE
Confidence 1234566666 677777764 57889999998775432 3334456778999999999999999999
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCH
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDS 805 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~ 805 (924)
.++|++|++++++|+.|+++|++++|+|||++.+|..+|+++|| +++++|+||.++|+.+|++|+.|+|+|||.||+
T Consensus 343 ~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi---~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~ 419 (499)
T TIGR01494 343 GLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI---FARVTPEEKAALVEALQKKGRVVAMTGDGVNDA 419 (499)
T ss_pred EecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---eeccCHHHHHHHHHHHHHCCCEEEEECCChhhH
Confidence 99999999999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred HHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002427 806 PALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAG 874 (924)
Q Consensus 806 ~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g 874 (924)
|||++|||||+|+ ++++||++|+++++..++.++++||+++++++||+.|++.||++.+|++++
T Consensus 420 ~al~~Advgia~~-----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~ 483 (499)
T TIGR01494 420 PALKKADVGIAMG-----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAAL 483 (499)
T ss_pred HHHHhCCCccccc-----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 688999999999999999999999999999999999999999999999874
No 21
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=6.1e-80 Score=764.23 Aligned_cols=517 Identities=23% Similarity=0.320 Sum_probs=433.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccce
Q 002427 323 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 402 (924)
Q Consensus 323 ~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~D 402 (924)
|++ +++++++++++.++..++++|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 104 ~~~-~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 104 LYL-GVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeee
Confidence 444 5566677778888899999999999999999999999998 778 679999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcceeccCCC----------ccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCC
Q 002427 403 GIVVWGT-SYVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA 471 (924)
Q Consensus 403 g~vl~G~-~~Vdes~LTGEs~pv~k~~g~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~ 471 (924)
|++++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++++.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 9999997 589999999999999998874 59999999999999999999999999999999998888899
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q 002427 472 PIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT 551 (924)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~ 551 (924)
|+|+..++++.++++++++++++.++++++.+ ..|..++.+++++++++|||+|++++++++..+.
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~ 322 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTA 322 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 99999999999999998888888777765432 2467788999999999999999999999999999
Q ss_pred HHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCC--------------CC-----HHHHHHHHHHH
Q 002427 552 GVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK--------------MD-----RGEFLTLVASA 612 (924)
Q Consensus 552 ~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~--------------~~-----~~~~l~~~~~~ 612 (924)
.+|+++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+. .+ .++++.+++.+
T Consensus 323 ~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alc 402 (997)
T TIGR01106 323 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLC 402 (997)
T ss_pred HHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999874321 01 01344444433
Q ss_pred hc----------------CCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEc-
Q 002427 613 EA----------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS- 675 (924)
Q Consensus 613 ~~----------------~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~- 675 (924)
.. ...+|++.|+++++...+... ... ..........+|++..++.......
T Consensus 403 n~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~---------~~~---~~~~~~v~~~pF~s~rK~m~~v~~~~ 470 (997)
T TIGR01106 403 NRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSV---------MEM---RERNPKVVEIPFNSTNKYQLSIHENE 470 (997)
T ss_pred CCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCH---------HHH---HhhCceeEEeccCCCCceEEEEEecc
Confidence 21 124789999999987532100 000 0011122334666655544333221
Q ss_pred ---C-e--EEEEeeHhhHhhcCC---------CCCh----hhhHHHHHHHHcCCeEEEEEE-------------------
Q 002427 676 ---G-K--QVLVGNRKLLNESGI---------TIPD----HVESFVVELEESARTGILVAY------------------- 717 (924)
Q Consensus 676 ---g-~--~~~ig~~~~~~~~~~---------~~~~----~~~~~~~~~~~~g~~~i~va~------------------- 717 (924)
+ + .+..|+++.+.+.+. ++++ .+.+..++++.+|+|++++|+
T Consensus 471 ~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~ 550 (997)
T TIGR01106 471 DPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDV 550 (997)
T ss_pred CCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhh
Confidence 1 1 245688776655432 1222 244556778899999999885
Q ss_pred -----CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------
Q 002427 718 -----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------- 770 (924)
Q Consensus 718 -----~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~---------------------- 770 (924)
|++|+|+++++||+|++++++|++|+++||+++|+|||++.||.++|+++||.
T Consensus 551 ~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~ 630 (997)
T TIGR01106 551 NFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVN 630 (997)
T ss_pred hccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccc
Confidence 34699999999999999999999999999999999999999999999999993
Q ss_pred -------------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEec-
Q 002427 771 -------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG- 818 (924)
Q Consensus 771 -------------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~- 818 (924)
.||||++|+||.++|+.+|+.|+.|+|+|||+||+|||++||||||||
T Consensus 631 ~~~~~~~vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~ 710 (997)
T TIGR01106 631 PRDAKACVVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGI 710 (997)
T ss_pred cccccceEEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCC
Confidence 199999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 819 AGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA 872 (924)
Q Consensus 819 ~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a 872 (924)
+|+|+++++||++|++|+|++|++++++||+++.|+++++.|.++.|+..+.+.
T Consensus 711 ~G~~vak~aADivL~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~ 764 (997)
T TIGR01106 711 AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPF 764 (997)
T ss_pred cccHHHHHhhceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 799999999999999999999999999999999999999999999999776543
No 22
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=1.7e-79 Score=757.14 Aligned_cols=524 Identities=23% Similarity=0.313 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEE
Q 002427 327 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 406 (924)
Q Consensus 327 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl 406 (924)
++++++++++.-.+..++++|+++++++|.++.+.+++|+ ||| ++++|++++|+|||+|.+++||+|||||+|+
T Consensus 84 ~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi 157 (1053)
T TIGR01523 84 GGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADLRLI 157 (1053)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccEEEE
Confidence 5667777778888899999999999999999999999998 788 6799999999999999999999999999999
Q ss_pred ecc-eeeecccccCCCcceeccCC---------------CccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhc--
Q 002427 407 WGT-SYVNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM-- 468 (924)
Q Consensus 407 ~G~-~~Vdes~LTGEs~pv~k~~g---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-- 468 (924)
+++ ..||||+|||||.||.|.+. +.+|+||.+.+|.+++.|++||.+|.+|+|.+++.+.+.
T Consensus 158 ~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~~ 237 (1053)
T TIGR01523 158 ETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLF 237 (1053)
T ss_pred EeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhcc
Confidence 985 57999999999999999642 458999999999999999999999999999998865431
Q ss_pred ---------------------------------cCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 002427 469 ---------------------------------SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPE 515 (924)
Q Consensus 469 ---------------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 515 (924)
.++|+|+..++++.++..+.++++++.|+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------- 304 (1053)
T TIGR01523 238 QRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------- 304 (1053)
T ss_pred ccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------
Confidence 2489999999999988877777777666532210
Q ss_pred CCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEE
Q 002427 516 NGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAK 595 (924)
Q Consensus 516 ~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~ 595 (924)
.+...+.+++++++.++|++|++.+.++++.+..+|+|+++++|+++++|+||++++||+|||||||+|+|+|.+++
T Consensus 305 ---~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~ 381 (1053)
T TIGR01523 305 ---VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIW 381 (1053)
T ss_pred ---hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEE
Confidence 12356678899999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ecC-----------CC-----------------------------------------C----H---HHHHHHHHHHh---
Q 002427 596 VFT-----------KM-----------------------------------------D----R---GEFLTLVASAE--- 613 (924)
Q Consensus 596 ~~~-----------~~-----------------------------------------~----~---~~~l~~~~~~~--- 613 (924)
..+ ++ . . .+++..++.+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a~ 461 (1053)
T TIGR01523 382 IPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIAT 461 (1053)
T ss_pred EcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCCe
Confidence 421 00 0 0 11232222211
Q ss_pred ----------cCCCChHHHHHHHHHHhcCCCCCC-----CCCCC---CC-----CCccccCCCCcccccccceeecCCeE
Q 002427 614 ----------ASSEHPLAKAVVEYARHFHFFDDP-----SLNPD---GQ-----SHSKESTGSGWLLDVSDFSALPGRGI 670 (924)
Q Consensus 614 ----------~~s~hp~~~ai~~~~~~~~~~~~~-----~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~g~gv 670 (924)
....+|++.|++.++.+.+..... ..... .. ...+............+|++..++.-
T Consensus 462 ~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~ms 541 (1053)
T TIGR01523 462 VFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMA 541 (1053)
T ss_pred eeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeEE
Confidence 012589999999999876642100 00000 00 00000001122334456776665443
Q ss_pred EEEEc--Ce---EEEEeeHhhHhhcCC-----------CCCh----hhhHHHHHHHHcCCeEEEEEE-------------
Q 002427 671 QCFIS--GK---QVLVGNRKLLNESGI-----------TIPD----HVESFVVELEESARTGILVAY------------- 717 (924)
Q Consensus 671 ~~~~~--g~---~~~ig~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~g~~~i~va~------------- 717 (924)
....+ |. -+..|+++.+.+.+. ++++ .+.+..++++.+|+|++++|+
T Consensus 542 vv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~ 621 (1053)
T TIGR01523 542 SIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQL 621 (1053)
T ss_pred EEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchhh
Confidence 33321 22 245688877655432 1222 244556788999999999985
Q ss_pred ------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------
Q 002427 718 ------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------- 770 (924)
Q Consensus 718 ------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--------------- 770 (924)
|++|+|+++++||+|++++++|+.||++||+++|+|||++.||.+||+++||.
T Consensus 622 ~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~ 701 (1053)
T TIGR01523 622 KNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSM 701 (1053)
T ss_pred hccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccce
Confidence 34799999999999999999999999999999999999999999999999994
Q ss_pred ----------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHh
Q 002427 771 ----------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEA 827 (924)
Q Consensus 771 ----------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ 827 (924)
.+|||++|+||.++|+.+|++|+.|+|+|||+||+|||++|||||||| +|+++|+++
T Consensus 702 vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak~a 781 (1053)
T TIGR01523 702 VMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDA 781 (1053)
T ss_pred eeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHHHh
Confidence 289999999999999999999999999999999999999999999999 899999999
Q ss_pred cCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 828 ADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA 872 (924)
Q Consensus 828 ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a 872 (924)
||++|++++|++|+.++++||+++++|++.+.|.++.|+..+.+.
T Consensus 782 ADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~ 826 (1053)
T TIGR01523 782 SDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILL 826 (1053)
T ss_pred cCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999766543
No 23
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=2e-78 Score=746.22 Aligned_cols=539 Identities=23% Similarity=0.331 Sum_probs=432.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccc
Q 002427 322 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 401 (924)
Q Consensus 322 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~ 401 (924)
.|++ +.++++++++.-.+..++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeec
Confidence 4555 4556666777888888899999999999999999999998 777 67999999999999999999999999
Q ss_pred eEEEEecc-eeeecccccCCCcceeccCC-------------CccccceeeecceEEEEEEEecChhHHHHHHHHHHHhh
Q 002427 402 DGIVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 467 (924)
Q Consensus 402 Dg~vl~G~-~~Vdes~LTGEs~pv~k~~g-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 467 (924)
||+|++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+|+|.++++.++
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 78999999999999999875 78999999999999999999999999999999999988
Q ss_pred ccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHH
Q 002427 468 MSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAV 547 (924)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l 547 (924)
.+++|+|+..++++.++.++++++++++|+++........+...|. ..+..++..++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 8999999999999999998888777777665433211000011111 234556778899999999999999999999
Q ss_pred HHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCC--------------C------------
Q 002427 548 MVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM--------------D------------ 601 (924)
Q Consensus 548 ~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~--------------~------------ 601 (924)
+.++.+|+++|+++|+++++|+||++|+||||||||||+|+|++.+++..++. +
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPV 343 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999998764310 0
Q ss_pred -------HHHHHHHHHHHhc-------------CCCChHHHHHHHHHHhcCCCCCCCCCCCCCCC----ccccCCCCccc
Q 002427 602 -------RGEFLTLVASAEA-------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSH----SKESTGSGWLL 657 (924)
Q Consensus 602 -------~~~~l~~~~~~~~-------------~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 657 (924)
..+++..++.+.. ...+|.+.|+++++.+.+.............. ...........
T Consensus 344 ~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (917)
T TIGR01116 344 AGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKL 423 (917)
T ss_pred cccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhccee
Confidence 0112222222111 12589999999999876542211100000000 00000011123
Q ss_pred ccccceeecCCeEEEEEc--Ce--EEEEeeHhhHhhcCC----------CCCh----hhhHHHHHHHH-cCCeEEEEEE-
Q 002427 658 DVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNESGI----------TIPD----HVESFVVELEE-SARTGILVAY- 717 (924)
Q Consensus 658 ~~~~~~~~~g~gv~~~~~--g~--~~~ig~~~~~~~~~~----------~~~~----~~~~~~~~~~~-~g~~~i~va~- 717 (924)
...+|++..++. ...++ ++ .+..|+++.+.+.+. ++++ .+.+..+++++ +|+|++++|+
T Consensus 424 ~~~pF~s~rK~m-sviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k 502 (917)
T TIGR01116 424 ATLEFSRDRKSM-SVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFK 502 (917)
T ss_pred eecccChhhCeE-EEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 445666554432 22222 22 344688877665432 1222 23445677888 9999999985
Q ss_pred ----------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----
Q 002427 718 ----------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----- 770 (924)
Q Consensus 718 ----------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~----- 770 (924)
|++|+|+++++||+|++++++|++||++||+++|+|||+..||.++|+++||.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~ 582 (917)
T TIGR01116 503 DIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDED 582 (917)
T ss_pred ECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCcc
Confidence 23789999999999999999999999999999999999999999999999995
Q ss_pred --------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHH
Q 002427 771 --------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 824 (924)
Q Consensus 771 --------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a 824 (924)
.+|||++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||+||+|++.+
T Consensus 583 v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~a 662 (917)
T TIGR01116 583 VTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVA 662 (917)
T ss_pred ccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHH
Confidence 399999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 825 IEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIA 872 (924)
Q Consensus 825 ~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a 872 (924)
+++||+++.+|+|+.|++++++||++++|+++++.|.+..|+..+.+.
T Consensus 663 k~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~ 710 (917)
T TIGR01116 663 KEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCI 710 (917)
T ss_pred HHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999999999766543
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.3e-77 Score=746.13 Aligned_cols=559 Identities=22% Similarity=0.280 Sum_probs=434.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEEC--CCCcc
Q 002427 322 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVL--PGTKL 399 (924)
Q Consensus 322 ~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~--~G~~i 399 (924)
.||..+++++++++++..+..++++|+.+.++++.. .+..++|+ ||| ++++|+++||+|||+|.|+ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 455556777778888899999999999998888755 46778888 778 6899999999999999999 99999
Q ss_pred cceEEEEecceeeecccccCCCcceeccCC------------------Cccccceeeec-------ceEEEEEEEecChh
Q 002427 400 PADGIVVWGTSYVNESMVTGEAVPVLKEIN------------------SPVIGGTINLH-------GVLHIQATKVGSDA 454 (924)
Q Consensus 400 P~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g------------------~~v~aGt~~~~-------g~~~~~v~~~g~~t 454 (924)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.. |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999762 24999999984 78999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh
Q 002427 455 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 534 (924)
Q Consensus 455 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~ 534 (924)
..|++.+.+...+..++++++...++..++. +++++.++++++.+... +.++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhh
Confidence 9999999998877777888777666554433 33333333332222111 235778899999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCC-------------
Q 002427 535 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD------------- 601 (924)
Q Consensus 535 ~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~------------- 601 (924)
+|++||+++++++..++.+|+|+||+||++.++|.+|++|++|||||||||+|+|.|.+++..+...
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred HHHHHHHHHHHh-------cCCCChHHHHHHHHHHhcCCCCCCCCCCCCCC---CccccCCCCcccccccceeecCCe-E
Q 002427 602 RGEFLTLVASAE-------ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQS---HSKESTGSGWLLDVSDFSALPGRG-I 670 (924)
Q Consensus 602 ~~~~l~~~~~~~-------~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~g-v 670 (924)
...+....+.+. ....+|++.|+++++......+.......... ..........+....+|++..++. +
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsv 569 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSV 569 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEE
Confidence 111222222211 12479999999998643211000000000000 000000122234455777766543 3
Q ss_pred EEEEcC--e--EEEEeeHhhHhhcCC--CCChhhhHHHHHHHHcCCeEEEEEE---------------------CCeEEE
Q 002427 671 QCFISG--K--QVLVGNRKLLNESGI--TIPDHVESFVVELEESARTGILVAY---------------------DDNLIG 723 (924)
Q Consensus 671 ~~~~~g--~--~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG 723 (924)
.....+ + .+..|+|+.+.+.+. ..|+++.+..++++.+|+|++++|+ |++|+|
T Consensus 570 vv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flG 649 (1054)
T TIGR01657 570 IVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLG 649 (1054)
T ss_pred EEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEE
Confidence 333322 2 567799999988665 5788888899999999999999997 357999
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------------
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------- 770 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--------------------------------- 770 (924)
+++|+||+||+++++|++||++||+++|+||||+.||.+||+++||.
T Consensus 650 li~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1054)
T TIGR01657 650 FIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFA 729 (1054)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccc
Confidence 99999999999999999999999999999999999999999999992
Q ss_pred --------------------------------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcC
Q 002427 771 --------------------------------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGD 800 (924)
Q Consensus 771 --------------------------------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGD 800 (924)
.||||++|+||.++|+.||+.|+.|+|+||
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GD 809 (1054)
T TIGR01657 730 STQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGD 809 (1054)
T ss_pred cccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 389999999999999999999999999999
Q ss_pred CcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 002427 801 GINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIPIAAGVFFPSL 880 (924)
Q Consensus 801 g~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~~a~g~~~~~~ 880 (924)
|+||+|||++||||||||++ | |..+||+++.++++++++.+|++||+++.++++.+.|.+.||++.....+ .++ +.
T Consensus 810 G~ND~~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-~~ 885 (1054)
T TIGR01657 810 GANDCGALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVS-ILY-LI 885 (1054)
T ss_pred ChHHHHHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-Hc
Confidence 99999999999999999864 4 34789999999999999999999999999999999999999987643322 111 23
Q ss_pred CCCccHHHHHHHhhhhhHhHhhhccccc
Q 002427 881 GIKLPPWAAGACMALSSVSVVCSSLLLR 908 (924)
Q Consensus 881 g~~l~p~~a~~~m~~ss~~v~~ns~~l~ 908 (924)
|..++|+. ++...-++..+.++.+.
T Consensus 886 ~~~l~~~Q---~l~i~li~~~~~~l~l~ 910 (1054)
T TIGR01657 886 GSNLGDGQ---FLTIDLLLIFPVALLMS 910 (1054)
T ss_pred cCcCccHH---HHHHHHHHHHHHHHHHH
Confidence 44455543 23333344444444443
No 25
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-67 Score=558.33 Aligned_cols=490 Identities=29% Similarity=0.407 Sum_probs=404.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC-eEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEE
Q 002427 328 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 406 (924)
Q Consensus 328 ~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~-~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl 406 (924)
.++.+.+++..+-|..++.|.+.+.+.|...+.+ .++++. .+| +++.+++.+|+.||+|+|+.||.||+||.|+
T Consensus 70 ~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~--~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVI 144 (681)
T COG2216 70 IILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR--ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVI 144 (681)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--CCC---CeeeccccccccCCEEEEecCCCccCCCeEE
Confidence 3344455789999999999888777777665544 345553 346 6799999999999999999999999999999
Q ss_pred ecceeeecccccCCCcceeccCC---CccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHh
Q 002427 407 WGTSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASI 483 (924)
Q Consensus 407 ~G~~~Vdes~LTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 483 (924)
+|.+.||||.+||||-||.|++| +.|-.||.+.+.+++++++....+|.+.|++.+++.++.+|+|-+--...+..-
T Consensus 145 eG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~ 224 (681)
T COG2216 145 EGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSG 224 (681)
T ss_pred eeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHH
Confidence 99999999999999999999998 789999999999999999999999999999999999999999977444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccC
Q 002427 484 FVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKG 563 (924)
Q Consensus 484 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~ 563 (924)
+. ++++++..+ .|.+..+... .. ..+..-+++++..+|-.++--.+--=..++.|+.+.+++-++
T Consensus 225 LT-liFL~~~~T--l~p~a~y~~g----------~~--~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~S 289 (681)
T COG2216 225 LT-LIFLLAVAT--LYPFAIYSGG----------GA--ASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATS 289 (681)
T ss_pred HH-HHHHHHHHh--hhhHHHHcCC----------CC--cCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecC
Confidence 22 111122222 1222211110 01 123445677778888877766655556688889999999999
Q ss_pred chHHHHccCCcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCC
Q 002427 564 GDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDG 643 (924)
Q Consensus 564 ~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~ 643 (924)
++++|..|.+|+++.|||||+|.|+-.-.++++.++.+.+++...+.......+.|-.++|++.+++.+.........
T Consensus 290 GRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~-- 367 (681)
T COG2216 290 GRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDLQ-- 367 (681)
T ss_pred cchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCCccccc--
Confidence 999999999999999999999999999999999999999999999998899999999999999999875211110000
Q ss_pred CCCccccCCCCcccccccceeecCC-eEEEEEcCeEEEEeeHh----hHhhcCCCCChhhhHHHHHHHHcCCeEEEEEEC
Q 002427 644 QSHSKESTGSGWLLDVSDFSALPGR-GIQCFISGKQVLVGNRK----LLNESGITIPDHVESFVVELEESARTGILVAYD 718 (924)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~-gv~~~~~g~~~~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~ 718 (924)
.-....+|+....+ |+. .-.|.++..|+.+ +..+.+...|.+++...++.+..|.+++.|+.|
T Consensus 368 -----------~~~~fvpFtA~TRmSGvd-~~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~ 435 (681)
T COG2216 368 -----------SHAEFVPFTAQTRMSGVD-LPGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVEN 435 (681)
T ss_pred -----------ccceeeecceeccccccc-CCCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEEC
Confidence 00223345444322 221 1123577778754 455667778999999999999999999999999
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEE
Q 002427 719 DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 719 ~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~v 798 (924)
++++|++.++|-+||+.+|-+.+||++|||++|+||||+.||..||++.|++++.|+++||||.++|+.-|.+|+.|+|+
T Consensus 436 ~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAeatPEdK~~~I~~eQ~~grlVAMt 515 (681)
T COG2216 436 GRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPEDKLALIRQEQAEGRLVAMT 515 (681)
T ss_pred CEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhcCChHHHHHHHHHHHhcCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHH
Q 002427 799 GDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTF 851 (924)
Q Consensus 799 GDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~ 851 (924)
|||.||+|||++||||+||.+|++.|||++..|=+|.|..++.+.+++|++..
T Consensus 516 GDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~IGKqlL 568 (681)
T COG2216 516 GDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEIGKQLL 568 (681)
T ss_pred CCCCCcchhhhhcchhhhhccccHHHHHhhcccccCCCccceehHhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999864
No 26
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-71 Score=613.24 Aligned_cols=511 Identities=23% Similarity=0.331 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEE
Q 002427 327 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 406 (924)
Q Consensus 327 ~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl 406 (924)
..++...+.+......++..|..+.++.+.++.|..+.|+ ||| +..++..+++++||++.++-|++||||.+++
T Consensus 129 giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---Rdg---~k~~i~~eelVvGD~v~vk~GdrVPADiRii 202 (1019)
T KOG0203|consen 129 GIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---RDG---EKMTINAEELVVGDLVEVKGGDRVPADIRII 202 (1019)
T ss_pred EEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---ecc---eeEEechhhcccccceeeccCCcccceeEEE
Confidence 4444444444556677888889999999999999999999 888 6799999999999999999999999999999
Q ss_pred ecce-eeecccccCCCcceeccCC----------CccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHH
Q 002427 407 WGTS-YVNESMVTGEAVPVLKEIN----------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 475 (924)
Q Consensus 407 ~G~~-~Vdes~LTGEs~pv~k~~g----------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 475 (924)
++.. .||+|+|||||.|..+.+. +.-|.+|.+.+|..+..|.++|++|.+|+|..+-..-+..++|+++
T Consensus 203 s~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ 282 (1019)
T KOG0203|consen 203 SATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAK 282 (1019)
T ss_pred EecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchh
Confidence 9875 6999999999999998663 4578999999999999999999999999999998887889999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHH
Q 002427 476 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 555 (924)
Q Consensus 476 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~ 555 (924)
.++.+..+.....+++++..|+.-...+ .+|..++.+.+++++...|.+|+..+...+....++|+
T Consensus 283 ei~~fi~~it~vAi~~~i~fF~~~~~~g--------------y~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa 348 (1019)
T KOG0203|consen 283 EIEHFIHIITGVAIFLGISFFILALILG--------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMA 348 (1019)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhhc--------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHh
Confidence 9999988877777666666665444332 36788899999999999999999999999999999999
Q ss_pred hcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCCCC-------------------HHHHHHHHHHH---h
Q 002427 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD-------------------RGEFLTLVASA---E 613 (924)
Q Consensus 556 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~-------------------~~~~l~~~~~~---~ 613 (924)
++++++||.++.|+||...+||+|||||||+|+|.|.+++..+... -.++..++..+ +
T Consensus 349 ~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~ 428 (1019)
T KOG0203|consen 349 RKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAV 428 (1019)
T ss_pred hceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcce
Confidence 9999999999999999999999999999999999999988764321 01122222111 1
Q ss_pred c-------------CCCChHHHHHHHHHHhcCC-CCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEcC---
Q 002427 614 A-------------SSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG--- 676 (924)
Q Consensus 614 ~-------------~s~hp~~~ai~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~g--- 676 (924)
- ...++.+.|+++++..... ....+..... ..-.+|.+....-+......
T Consensus 429 ~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~k-------------v~eipfNSt~Kyqlsih~~~d~~ 495 (1019)
T KOG0203|consen 429 FKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPK-------------VAEIPFNSTNKYQLSIHETEDPS 495 (1019)
T ss_pred ecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHH-------------hhcCCcccccceEEEEEecCCCC
Confidence 0 1356788888888754310 0000000000 00012222222212111110
Q ss_pred --e--EEEEeeHhhHhhcCC-------CCCh------hhhHHHHHHHHcCCeEEEEEE----------------------
Q 002427 677 --K--QVLVGNRKLLNESGI-------TIPD------HVESFVVELEESARTGILVAY---------------------- 717 (924)
Q Consensus 677 --~--~~~ig~~~~~~~~~~-------~~~~------~~~~~~~~~~~~g~~~i~va~---------------------- 717 (924)
+ -+..|+|+.+.+.+. +.|. ++.+...++...|.|++.+++
T Consensus 496 ~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p 575 (1019)
T KOG0203|consen 496 DPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFP 575 (1019)
T ss_pred CccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCc
Confidence 1 233466665544332 2222 223334444555666654432
Q ss_pred --CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------
Q 002427 718 --DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------------------------- 770 (924)
Q Consensus 718 --~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~------------------------- 770 (924)
++.|+|++++-||+|..+++++..||.+|||++|+|||++.||+++|++.||.
T Consensus 576 ~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~ 655 (1019)
T KOG0203|consen 576 TDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRD 655 (1019)
T ss_pred chhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccc
Confidence 56899999999999999999999999999999999999999999999999974
Q ss_pred ----------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEec-CCh
Q 002427 771 ----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGT 821 (924)
Q Consensus 771 ----------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~ 821 (924)
-||||.||+||+.||+.+|++|..|+.+|||+||+|||+.|||||||| +|+
T Consensus 656 a~a~VihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGS 735 (1019)
T KOG0203|consen 656 AKAAVIHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS 735 (1019)
T ss_pred cceEEEecccccccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccc
Confidence 199999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 822 DIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 870 (924)
Q Consensus 822 ~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~ 870 (924)
|+++++||+||+||||.+|+..+++||-+++|.||.++|.++.|+--|.
T Consensus 736 DvsKqAADmILLDDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~ 784 (1019)
T KOG0203|consen 736 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEIT 784 (1019)
T ss_pred hHHHhhcceEEecCcchhheeecccceehhhhHHHHHHHHHHhcchhHh
Confidence 9999999999999999999999999999999999999999999997763
No 27
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.3e-66 Score=649.69 Aligned_cols=568 Identities=19% Similarity=0.218 Sum_probs=418.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCC-CceeeEEEEeCCCCCCCCEEEECCCCc
Q 002427 320 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKV-GKCIEEREIDALLIQSGDTLKVLPGTK 398 (924)
Q Consensus 320 ~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~-g~~~~~~~i~~~~l~~GDii~v~~G~~ 398 (924)
+..++...++++++..+++++|++.++|+++.++ +..++|+ |+ | .++++++++|+|||+|+|++||+
T Consensus 50 ~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~ 117 (1057)
T TIGR01652 50 RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDER 117 (1057)
T ss_pred ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCc
Confidence 3445555666666778999999999999887644 3678887 54 6 57889999999999999999999
Q ss_pred ccceEEEEe-----cceeeecccccCCCcceeccCC--------------------------------------------
Q 002427 399 LPADGIVVW-----GTSYVNESMVTGEAVPVLKEIN-------------------------------------------- 429 (924)
Q Consensus 399 iP~Dg~vl~-----G~~~Vdes~LTGEs~pv~k~~g-------------------------------------------- 429 (924)
||||++|++ |.+.||||.|||||.|+.|.+.
T Consensus 118 iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~ 197 (1057)
T TIGR01652 118 IPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYP 197 (1057)
T ss_pred ccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCccc
Confidence 999999998 7789999999999999988641
Q ss_pred ----Cccccceeeec-ceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 002427 430 ----SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGV 504 (924)
Q Consensus 430 ----~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ 504 (924)
+.+++||.+.+ |++.+.|++||.+|.+++. ....+.+++++++..+++..++..+.++++++++++..++..
T Consensus 198 l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~ 274 (1057)
T TIGR01652 198 LSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWND 274 (1057)
T ss_pred CCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheec
Confidence 34678888888 9999999999999988663 334456789999999999888777777777666655333211
Q ss_pred cCCCCCcccC-------CCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHH------HHHHhc----CccccCchHH
Q 002427 505 LGAYPEQWLP-------ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT------GVGANN----GVLIKGGDAL 567 (924)
Q Consensus 505 ~~~~~~~~~~-------~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~------~~~~~~----gilvk~~~~l 567 (924)
. .....|.. .....+...+.+++.++...+|.+|+..+.++..... .+|.++ ++.+|+.+.+
T Consensus 275 ~-~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~ 353 (1057)
T TIGR01652 275 A-HGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLN 353 (1057)
T ss_pred c-cCCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCCh
Confidence 0 11112311 0012345577788889999999999999999988888 667764 5999999999
Q ss_pred HHccCCcEEEecCCCccccCceEEEEEEecCC-----CC-----------------------------------------
Q 002427 568 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----MD----------------------------------------- 601 (924)
Q Consensus 568 E~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~----------------------------------------- 601 (924)
|+||+|++||+|||||||+|+|+++++...+. .+
T Consensus 354 E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1057)
T TIGR01652 354 EELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTN 433 (1057)
T ss_pred HHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcC
Confidence 99999999999999999999999999864321 00
Q ss_pred ------HHHHHHHHHHH-----h---c-------CCCChHHHHHHHHHHhcCCCCCCCCCCCCC--CCccccCCCCcccc
Q 002427 602 ------RGEFLTLVASA-----E---A-------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQ--SHSKESTGSGWLLD 658 (924)
Q Consensus 602 ------~~~~l~~~~~~-----~---~-------~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 658 (924)
..+++...+.+ + . .+.+|++.|++++++..|+....+...... ...........+..
T Consensus 434 ~~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~ 513 (1057)
T TIGR01652 434 KPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILN 513 (1057)
T ss_pred CchhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEE
Confidence 01122111111 1 1 136899999999998876532211111000 00000011233445
Q ss_pred cccceeecCCe-EEEEEc-Ce--EEEEeeHhhHhhcCCC----CChhhhHHHHHHHHcCCeEEEEEE-------------
Q 002427 659 VSDFSALPGRG-IQCFIS-GK--QVLVGNRKLLNESGIT----IPDHVESFVVELEESARTGILVAY------------- 717 (924)
Q Consensus 659 ~~~~~~~~g~g-v~~~~~-g~--~~~ig~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~i~va~------------- 717 (924)
..+|++..++. +.+... |+ -+..|+++.+...... ..+...+..++++.+|+|++++|+
T Consensus 514 ~~pF~s~rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~ 593 (1057)
T TIGR01652 514 VLEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNE 593 (1057)
T ss_pred ecccCCCCCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHH
Confidence 66777766542 222222 22 3456888776554322 234456677889999999999985
Q ss_pred -------------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--
Q 002427 718 -------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-- 770 (924)
Q Consensus 718 -------------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~-- 770 (924)
|++++|+++++|+||++++++|+.||++||++||+|||+.+||.+||+++||.
T Consensus 594 ~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~ 673 (1057)
T TIGR01652 594 EYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSR 673 (1057)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCC
Confidence 45899999999999999999999999999999999999999999999999862
Q ss_pred ------------------------------------------------------------------------eEEeccCh
Q 002427 771 ------------------------------------------------------------------------DVMADVMP 778 (924)
Q Consensus 771 ------------------------------------------------------------------------~v~a~~~P 778 (924)
.||||++|
T Consensus 674 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP 753 (1057)
T TIGR01652 674 NMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSP 753 (1057)
T ss_pred CCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCH
Confidence 18999999
Q ss_pred hhHHHHHHHHhhC-CCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHHHHH-HHHHHHHHHHH
Q 002427 779 AGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVIIAI-DLSRKTFARIR 855 (924)
Q Consensus 779 ~~K~~~V~~lq~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~~~i-~~~r~~~~~i~ 855 (924)
+||.++|+.+|+. |+.|+|+|||.||+|||++|||||++. .....|+.+||+++. +|+.|.+++ .+||.++++++
T Consensus 754 ~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~~ 831 (1057)
T TIGR01652 754 SQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRIS 831 (1057)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999998 999999999999999999999999884 222368899999995 499999988 77999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hhhccccCCCccHHHHHHHhhhhhHhHhhhcccc
Q 002427 856 LNYIFAMAYNVIAIPIAA--GVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLL 907 (924)
Q Consensus 856 ~n~~~~l~~n~~~i~~a~--g~~~~~~g~~l~p~~a~~~m~~ss~~v~~ns~~l 907 (924)
+.+.|.+..|++.+.+.+ +++..|.| .+|+.....+....+...+.++-+
T Consensus 832 ~~i~~~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l~~~n~~~t~lp~~~l 883 (1057)
T TIGR01652 832 KMILYFFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYMVLYNVFFTALPVISL 883 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999987665432 22222333 244444444444444444444443
No 28
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-66 Score=589.03 Aligned_cols=540 Identities=24% Similarity=0.326 Sum_probs=411.3
Q ss_pred HHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeC
Q 002427 303 YFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDA 382 (924)
Q Consensus 303 ~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~ 382 (924)
|++..++++. |....|++.++.++++...+..+..+..++....++++.+.. ..++|+ |+| .+++|++
T Consensus 198 YlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~-~~V~V~---R~g---~~~ti~S 265 (1140)
T KOG0208|consen 198 YLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT-CPVTVI---RDG---FWETVDS 265 (1140)
T ss_pred HHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE---ECC---EEEEEec
Confidence 4555555444 445677777888888888899999998888888888877653 566777 677 7899999
Q ss_pred CCCCCCCEEEECC-CCcccceEEEEecceeeecccccCCCcceeccCC-------------------Cccccceeeec--
Q 002427 383 LLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------------SPVIGGTINLH-- 440 (924)
Q Consensus 383 ~~l~~GDii~v~~-G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv~k~~g-------------------~~v~aGt~~~~-- 440 (924)
+||+||||+.+.+ |-..|||++|++|+|.||||+|||||+|+.|.+- +.+|+||.+..
T Consensus 266 ~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r 345 (1140)
T KOG0208|consen 266 SELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQAR 345 (1140)
T ss_pred cccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEee
Confidence 9999999999999 8999999999999999999999999999999763 35899998764
Q ss_pred ----ceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 002427 441 ----GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPEN 516 (924)
Q Consensus 441 ----g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 516 (924)
+...++|++||-.|..|++.+.+-.++ +.+.+-+-| +-.|+..+..+|++.|++..+.... .
T Consensus 346 ~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk--P~~fkfyrd--s~~fi~~l~~ia~~gfiy~~i~l~~----------~ 411 (1140)
T KOG0208|consen 346 AYLGGPVLAMVLRTGFSTTKGQLVRSILYPK--PVNFKFYRD--SFKFILFLVIIALIGFIYTAIVLNL----------L 411 (1140)
T ss_pred cCCCCceEEEEEeccccccccHHHHhhcCCC--CcccHHHHH--HHHHHHHHHHHHHHHHHHHhHhHHH----------c
Confidence 789999999999999999988776543 222232222 3334444444555555443332211 1
Q ss_pred CccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEe
Q 002427 517 GTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKV 596 (924)
Q Consensus 517 ~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~ 596 (924)
+.++...+++++-++.+..|+|||.+..+....+.+|+.|+||+|-+|+.+...|++|++|||||||||++.+.+..+.+
T Consensus 412 g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~ 491 (1140)
T KOG0208|consen 412 GVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVP 491 (1140)
T ss_pred CCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEe
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCC-CH--------HHH-----------------HHHHHHHhcCC---------CChHHHHHHHHHHhcCCCC---CCC
Q 002427 597 FTKM-DR--------GEF-----------------LTLVASAEASS---------EHPLAKAVVEYARHFHFFD---DPS 638 (924)
Q Consensus 597 ~~~~-~~--------~~~-----------------l~~~~~~~~~s---------~hp~~~ai~~~~~~~~~~~---~~~ 638 (924)
.++. +. ++. --..+.+.+|| .+|++..+.+...+..... +..
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~ 571 (1140)
T KOG0208|consen 492 VERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIEDEA 571 (1140)
T ss_pred ccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccceEEEeccccchh
Confidence 4321 00 000 01111222222 3455544443322211000 000
Q ss_pred C-----------CCCC--CCCccccCC-CCcccccccceeecC-CeEEEEEcCe----EEEEeeHhhHhhcCC--CCChh
Q 002427 639 L-----------NPDG--QSHSKESTG-SGWLLDVSDFSALPG-RGIQCFISGK----QVLVGNRKLLNESGI--TIPDH 697 (924)
Q Consensus 639 ~-----------~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g-~gv~~~~~g~----~~~ig~~~~~~~~~~--~~~~~ 697 (924)
. .+.. .+...+... ...+.+-.+|.+.-. +.+.+...|. .+..|+|+.+.+.+. .+|.+
T Consensus 572 ~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~d 651 (1140)
T KOG0208|consen 572 TREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETVPAD 651 (1140)
T ss_pred hhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccCCcc
Confidence 0 0000 000000000 111223334444333 3444444443 456799999988665 46999
Q ss_pred hhHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCC
Q 002427 698 VESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN 756 (924)
Q Consensus 698 ~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~ 756 (924)
+++.++++..+|+|+|++|+ |++|+|++.|+++||++++.+|++|.+++||++|+||||
T Consensus 652 y~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDN 731 (1140)
T KOG0208|consen 652 YQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDN 731 (1140)
T ss_pred HHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCc
Confidence 99999999999999999997 668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCc------------------------------------------------------------------
Q 002427 757 WRTAHAVAREIGIQ------------------------------------------------------------------ 770 (924)
Q Consensus 757 ~~ta~~iA~~~gi~------------------------------------------------------------------ 770 (924)
..||..+||+||+.
T Consensus 732 llTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~ 811 (1140)
T KOG0208|consen 732 LLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKT 811 (1140)
T ss_pred hheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCch
Confidence 99999999999995
Q ss_pred -------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEE
Q 002427 771 -------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYV 831 (924)
Q Consensus 771 -------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~v 831 (924)
.|||||+|+||.++|+.||+-|+.|+|+|||.||+.||++|||||+++.+ .|.-+|.+.
T Consensus 812 f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSea--EASvAApFT 889 (1140)
T KOG0208|consen 812 FQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSEA--EASVAAPFT 889 (1140)
T ss_pred hHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhhh--hHhhcCccc
Confidence 29999999999999999999999999999999999999999999999743 455678888
Q ss_pred EecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 832 LMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNVIAIP 870 (924)
Q Consensus 832 l~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~~~i~ 870 (924)
---.+++.++.+|++||..+-.-...+.|...|.++...
T Consensus 890 Sk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFi 928 (1140)
T KOG0208|consen 890 SKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFI 928 (1140)
T ss_pred cCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 877899999999999999998888888888888766543
No 29
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-65 Score=552.66 Aligned_cols=511 Identities=24% Similarity=0.364 Sum_probs=418.8
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCC
Q 002427 318 FWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 397 (924)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~ 397 (924)
..+++|-+. ..++.+++++.-+....++.+.+....|+.-...++.|+ ||| +|.+++.++|+||||+.++.|+
T Consensus 92 ~~~~DW~DF-~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~Gd 164 (942)
T KOG0205|consen 92 GRPPDWQDF-VGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLGD 164 (942)
T ss_pred CCCcchhhh-hhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccCC
Confidence 455677663 445555566655555666677777777777667778888 888 6899999999999999999999
Q ss_pred cccceEEEEeccee-eecccccCCCcceeccCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHH
Q 002427 398 KLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKF 476 (924)
Q Consensus 398 ~iP~Dg~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~ 476 (924)
+|||||+|++|+-+ ||+|.|||||.|+.|.+||.+|+||.+..|++.++|++||.+|..|+-..++.. ..+...+|+.
T Consensus 165 IiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkV 243 (942)
T KOG0205|consen 165 IIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKV 243 (942)
T ss_pred EecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHH
Confidence 99999999999964 999999999999999999999999999999999999999999999999999988 5667889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhh-cccccchhHHHHHHHHHHHHH
Q 002427 477 ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA-CPCALGLATPTAVMVATGVGA 555 (924)
Q Consensus 477 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~-~P~aL~la~p~~l~~~~~~~~ 555 (924)
.+.+..+++..+.+..++...+.+.... -...-....+.++++. +|.++|..+.+.++++..+++
T Consensus 244 Lt~IGn~ci~si~~g~lie~~vmy~~q~--------------R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLa 309 (942)
T KOG0205|consen 244 LTGIGNFCICSIALGMLIEITVMYPIQH--------------RLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS 309 (942)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhhhh--------------hhhhhhhhheheeeecccccccceeeeehhhHHHHHHH
Confidence 9998887766554333332222221110 1122233455666666 999999999999999999999
Q ss_pred hcCccccCchHHHHccCCcEEEecCCCccccCceEEEE--E-EecCCCCHHHHHHHHHHHh-cCCCChHHHHHHHHHHhc
Q 002427 556 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT--A-KVFTKMDRGEFLTLVASAE-ASSEHPLAKAVVEYARHF 631 (924)
Q Consensus 556 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~--~-~~~~~~~~~~~l~~~~~~~-~~s~hp~~~ai~~~~~~~ 631 (924)
++|.++|...++|.++.+|++|+|||||||.|+++|.+ + ...++.+.++++-.++.+. ....+.+++|++...++-
T Consensus 310 qqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP 389 (942)
T KOG0205|consen 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP 389 (942)
T ss_pred hcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH
Confidence 99999999999999999999999999999999999988 5 3346677777766655544 345678899998776431
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcccccccceeecCCeEEEEEc--Ce--EEEEeeHhhHhh---cCCCCChhhhHHHHH
Q 002427 632 HFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNE---SGITIPDHVESFVVE 704 (924)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~--g~--~~~ig~~~~~~~---~~~~~~~~~~~~~~~ 704 (924)
++...+....++.+|....++--..+++ |+ +...|.|+++.+ ...++|+.+.+.+++
T Consensus 390 ----------------Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~ 453 (942)
T KOG0205|consen 390 ----------------KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDK 453 (942)
T ss_pred ----------------HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHH
Confidence 1111233334556676666554444443 33 566799988654 344678888888999
Q ss_pred HHHcCCeEEEEEECC-------------eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-
Q 002427 705 LEESARTGILVAYDD-------------NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ- 770 (924)
Q Consensus 705 ~~~~g~~~i~va~~~-------------~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~- 770 (924)
+.++|.|.+.||+.. +++|+.-+-||+|.+..++|++-...|.+|.|+|||....++..++++|+-
T Consensus 454 ~AeRGlRSLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgt 533 (942)
T KOG0205|consen 454 FAERGLRSLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGT 533 (942)
T ss_pred HHHhcchhhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhcccc
Confidence 999999999999742 699999999999999999999999999999999999999999999999984
Q ss_pred -----------------------------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCCh
Q 002427 771 -----------------------------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGT 821 (924)
Q Consensus 771 -----------------------------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~ 821 (924)
+=||.+.|++|.++|+.||++|+.++|.|||+||+|||+.||+||++..++
T Consensus 534 nmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~at 613 (942)
T KOG0205|consen 534 NMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADAT 613 (942)
T ss_pred CcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccch
Confidence 368999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 822 DIAIEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 866 (924)
Q Consensus 822 ~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~ 866 (924)
|.|+.++|+|++.+.++.+..++..||.++++++....|++...+
T Consensus 614 daar~asdiVltepglSviI~avltSraIfqrmknytiyavsiti 658 (942)
T KOG0205|consen 614 DAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 658 (942)
T ss_pred hhhcccccEEEcCCCchhhHHHHHHHHHHHHHHhhheeeeehhHH
Confidence 999999999999999999999999999999999987777665544
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=2.1e-60 Score=588.35 Aligned_cols=545 Identities=16% Similarity=0.170 Sum_probs=394.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcc
Q 002427 320 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKL 399 (924)
Q Consensus 320 ~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~i 399 (924)
+..++...++++++..+++++|++.|+|+++.++ +..++++ ++| .++++++++|+|||+|+|++||+|
T Consensus 136 ~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~---~~~---~~~~i~~~~i~vGDiv~v~~ge~i 203 (1178)
T PLN03190 136 RGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVL---VDD---QFQEKKWKDIRVGEIIKIQANDTL 203 (1178)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEE---ECC---eEEEEeHHHCCCCCEEEECCCCEe
Confidence 3345555666777778999999999999998765 3577877 566 578899999999999999999999
Q ss_pred cceEEEEe-----cceeeecccccCCCcceeccCCCc-------------------------------------------
Q 002427 400 PADGIVVW-----GTSYVNESMVTGEAVPVLKEINSP------------------------------------------- 431 (924)
Q Consensus 400 P~Dg~vl~-----G~~~Vdes~LTGEs~pv~k~~g~~------------------------------------------- 431 (924)
|||++|++ |.++||||.||||+.|+.|.+++.
T Consensus 204 PaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~ 283 (1178)
T PLN03190 204 PCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPS 283 (1178)
T ss_pred eeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCcc
Confidence 99999998 889999999999999999975421
Q ss_pred --cccceeeec-ceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002427 432 --VIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 508 (924)
Q Consensus 432 --v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~ 508 (924)
++.|+.+.+ .++.+.|++||.+|.... ....+..+++++++..+++..++..+.++++++++++...+......
T Consensus 284 n~llRG~~LrnT~~i~GvVVYTG~dTK~~~---N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~ 360 (1178)
T PLN03190 284 NIILRGCELKNTAWAIGVAVYCGRETKAML---NNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRD 360 (1178)
T ss_pred ceeeccceecCCceEEEEEEEechhhhHhh---cCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 222333332 278999999999998422 12223457899999999998887777777777666553322111100
Q ss_pred ---CCcccCC------CC-----cc----HHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhc----------Ccc
Q 002427 509 ---PEQWLPE------NG-----TH----FVFALMFSISVVVIACPCALGLATPTAVMVATGVGANN----------GVL 560 (924)
Q Consensus 509 ---~~~~~~~------~~-----~~----~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~----------gil 560 (924)
...|... .. .. +...+...+.++-..+|.+|.+.+.+........+.++ ++.
T Consensus 361 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~ 440 (1178)
T PLN03190 361 ELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQ 440 (1178)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCcce
Confidence 0112100 00 01 12223334455557899999999999986645555433 378
Q ss_pred ccCchHHHHccCCcEEEecCCCccccCceEEEEEEecC-----CC---------------------------C-------
Q 002427 561 IKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-----KM---------------------------D------- 601 (924)
Q Consensus 561 vk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~-----~~---------------------------~------- 601 (924)
+|+.+..|+||+|++||+|||||||+|+|.++++...+ +. +
T Consensus 441 vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1178)
T PLN03190 441 CRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELS 520 (1178)
T ss_pred eccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCCHHHHhhh
Confidence 99999999999999999999999999999999986521 00 0
Q ss_pred ------H-----HHHHHHHH---HH-----h-----------cCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccC
Q 002427 602 ------R-----GEFLTLVA---SA-----E-----------ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKEST 651 (924)
Q Consensus 602 ------~-----~~~l~~~~---~~-----~-----------~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (924)
+ .+++...+ .+ + ..+.+|.+.|++++|.+.|+....+.............
T Consensus 521 ~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~ 600 (1178)
T PLN03190 521 KSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGER 600 (1178)
T ss_pred hccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeeccce
Confidence 0 11222221 11 0 12347999999999999886433322221111111111
Q ss_pred CCCcccccccceeecCCeEEE-EE-cCe--EEEEeeHhhHhhcCCC-----CChhhhHHHHHHHHcCCeEEEEEE-----
Q 002427 652 GSGWLLDVSDFSALPGRGIQC-FI-SGK--QVLVGNRKLLNESGIT-----IPDHVESFVVELEESARTGILVAY----- 717 (924)
Q Consensus 652 ~~~~~~~~~~~~~~~g~gv~~-~~-~g~--~~~ig~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~i~va~----- 717 (924)
....+..+.+|++..++.-.. .. +|. -+..|+++.+.+.... ..+...+..++++.+|+|++++|+
T Consensus 601 ~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~ 680 (1178)
T PLN03190 601 QRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSLGLRTLVVGMRELND 680 (1178)
T ss_pred ecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHHHHHHHhcCCceEEEEEEeCCH
Confidence 233455667787776553222 21 122 2345777776554321 234456677889999999999874
Q ss_pred ---------------------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 002427 718 ---------------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 718 ---------------------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA 764 (924)
|++++|+++++|++|++++++|+.|+++||++||+|||+.+||.+||
T Consensus 681 ~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA 760 (1178)
T PLN03190 681 SEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIG 760 (1178)
T ss_pred HHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999
Q ss_pred HHcCCc--------------------------------------------------------------------------
Q 002427 765 REIGIQ-------------------------------------------------------------------------- 770 (924)
Q Consensus 765 ~~~gi~-------------------------------------------------------------------------- 770 (924)
++|||.
T Consensus 761 ~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~ 840 (1178)
T PLN03190 761 YSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLF 840 (1178)
T ss_pred HHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHH
Confidence 866551
Q ss_pred --------eEEeccChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHH
Q 002427 771 --------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDV 840 (924)
Q Consensus 771 --------~v~a~~~P~~K~~~V~~lq~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l 840 (924)
-+|||++|+||+++|+.+|+. ++.|+|+|||.||++||++|||||++. .....|..+||+.+ +.|+.|
T Consensus 841 ~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIsG~EG~qA~~aSDfaI--~~Fr~L 918 (1178)
T PLN03190 841 QLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAM--GQFRFL 918 (1178)
T ss_pred HHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeecCchhHHHHHhhccch--hhhHHH
Confidence 169999999999999999987 578999999999999999999999873 33347888999999 669999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhccccC
Q 002427 841 IIAID-LSRKTFARIRLNYIFAMAYNVIAIPIAA--GVFFPSLG 881 (924)
Q Consensus 841 ~~~i~-~~r~~~~~i~~n~~~~l~~n~~~i~~a~--g~~~~~~g 881 (924)
.+++. .||..|+++.+-+.|.|..|++....-+ +++..|.|
T Consensus 919 ~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg 962 (1178)
T PLN03190 919 VPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTL 962 (1178)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99887 5999999999999999999998765432 44544555
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-54 Score=479.22 Aligned_cols=447 Identities=23% Similarity=0.269 Sum_probs=330.1
Q ss_pred HHHHHHHhc--CCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECC---CCcccceEEEEecceeeecccccCCCcce
Q 002427 350 DAIKKLVEL--APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLP---GTKLPADGIVVWGTSYVNESMVTGEAVPV 424 (924)
Q Consensus 350 ~~l~~l~~~--~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~---G~~iP~Dg~vl~G~~~Vdes~LTGEs~pv 424 (924)
+.+..+.++ .|....|. |++ .|+.+..+||.|||+|.|.. ...||||.+++.|+|.|||+||||||.|.
T Consensus 240 ~~lse~R~Mg~kpy~I~v~---R~k---KW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl 313 (1160)
T KOG0209|consen 240 RTLSEFRTMGNKPYTINVY---RNK---KWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPL 313 (1160)
T ss_pred HHHHHHHhcCCCceEEEEE---ecC---cceeccccccCCCceEEeccCcccCcCCceEEEEecceeechhhhcCCCccc
Confidence 344444444 45555666 666 68999999999999999988 56899999999999999999999999999
Q ss_pred eccC-----------------CCccccceeee-------------cceEEEEEEEecChhHHHHHHHHHHHhhccCChhH
Q 002427 425 LKEI-----------------NSPVIGGTINL-------------HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQ 474 (924)
Q Consensus 425 ~k~~-----------------g~~v~aGt~~~-------------~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~ 474 (924)
.|++ ...+|+||.++ +|-+.+.|.+||-+|.-|++.+.+--...+-+.
T Consensus 314 ~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aervTa-- 391 (1160)
T KOG0209|consen 314 MKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERVTA-- 391 (1160)
T ss_pred cccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceeeee--
Confidence 9965 12478999765 477889999999999999987765442222221
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH
Q 002427 475 KFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVG 554 (924)
Q Consensus 475 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~ 554 (924)
-++-+.+|+.+.+++|++...+.+.-|.-. + ..+-.+-+.-.+-++...+|.-||+=..+++..++..+
T Consensus 392 --Nn~Etf~FILFLlVFAiaAa~Yvwv~Gskd--~-------~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~AL 460 (1160)
T KOG0209|consen 392 --NNRETFIFILFLLVFAIAAAGYVWVEGSKD--P-------TRSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIAL 460 (1160)
T ss_pred --ccHHHHHHHHHHHHHHHHhhheEEEecccC--c-------chhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHH
Confidence 223344455555555554432211111111 0 01112233445556666789999999999999999999
Q ss_pred HhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCC----------CCHH--HHHHHHHHHh----cCCCC
Q 002427 555 ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK----------MDRG--EFLTLVASAE----ASSEH 618 (924)
Q Consensus 555 ~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~----------~~~~--~~l~~~~~~~----~~s~h 618 (924)
+|.||+|..|-.+.-.|++|.+|||||||||+..|.|.++--.+. .+.+ .++..++++- .--.+
T Consensus 461 ak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~le~~lVGD 540 (1160)
T KOG0209|consen 461 AKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVLLEDKLVGD 540 (1160)
T ss_pred HHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchhhCCchHHHHHHHHHHHHHhcCcccCC
Confidence 999999999999999999999999999999999999998764221 1112 2333333332 23578
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCCCCcccccccceeecCC-eEEEEEcC-----e--EEEEeeHhhHhhc
Q 002427 619 PLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFISG-----K--QVLVGNRKLLNES 690 (924)
Q Consensus 619 p~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gv~~~~~g-----~--~~~ig~~~~~~~~ 690 (924)
|+++|.++...+..-.++....+.+.. ....+.+...|.+.-.+ .+.+..++ + .-+.|.|+.+++.
T Consensus 541 PlEKA~l~~v~W~~~k~~~v~p~~~~~------~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~~aVKGAPEvi~~m 614 (1160)
T KOG0209|consen 541 PLEKATLEAVGWNLEKKNSVCPREGNG------KKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYFVAVKGAPEVIQEM 614 (1160)
T ss_pred hHHHHHHHhcCcccccCcccCCCcCCC------cccchhhhhhHHHHHHHHHhhhhcccCCCceEEEEEecCCHHHHHHH
Confidence 999999998765421111111111110 01222333344432221 11111111 1 2345889988887
Q ss_pred CCCCChhhhHHHHHHHHcCCeEEEEEE---------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeE
Q 002427 691 GITIPDHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRP 749 (924)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v 749 (924)
-.++|.++++...++.++|.|++++++ |++|.|++.|.-|+|+|++++|++|++.++++
T Consensus 615 l~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH~v 694 (1160)
T KOG0209|consen 615 LRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSHRV 694 (1160)
T ss_pred HHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCceE
Confidence 778999999999999999999999987 56899999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHcCCc-----------------------------------------------------------
Q 002427 750 VMVTGDNWRTAHAVAREIGIQ----------------------------------------------------------- 770 (924)
Q Consensus 750 ~mlTGD~~~ta~~iA~~~gi~----------------------------------------------------------- 770 (924)
+|+||||+.||.++|+++||.
T Consensus 695 vMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~l~~~~dlcitG~~l~~l~~~ 774 (1160)
T KOG0209|consen 695 VMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTLLAETHDLCITGSALDHLQAT 774 (1160)
T ss_pred EEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCccchhhhhhhhhhcchhHHHHHhhh
Confidence 999999999999999999995
Q ss_pred ----------eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCCh
Q 002427 771 ----------DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGT 821 (924)
Q Consensus 771 ----------~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~ 821 (924)
.||||+.|.||.-++..|++.|+.++|+|||.||+.||++||||||+-+++
T Consensus 775 ~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~~ 835 (1160)
T KOG0209|consen 775 DQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNP 835 (1160)
T ss_pred HHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcCC
Confidence 299999999999999999999999999999999999999999999996543
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=440.77 Aligned_cols=507 Identities=21% Similarity=0.262 Sum_probs=367.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCccc
Q 002427 321 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 400 (924)
Q Consensus 321 ~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP 400 (924)
..|+....+++++.++.+.++++.|++.++..++- .-.+.. |+|. ...|+++|++||+|.++.+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse------~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSE------KYTKLT--RDGT----RREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hheeec--cCCc----ccccccccccccEEEEecCCcCC
Confidence 45666677888888999999999998877766542 223333 5552 33499999999999999999999
Q ss_pred ceEEEEe-----cceeeecccccCCCcceeccC-----------------------------------------------
Q 002427 401 ADGIVVW-----GTSYVNESMVTGEAVPVLKEI----------------------------------------------- 428 (924)
Q Consensus 401 ~Dg~vl~-----G~~~Vdes~LTGEs~pv~k~~----------------------------------------------- 428 (924)
||.+++. |++.|-+-.|+||+....|-|
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999997 788999999999988766511
Q ss_pred CCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002427 429 NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 508 (924)
Q Consensus 429 g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~ 508 (924)
.+.++++|++.+|.+.+.|++||.+|+-.- + -..++.+-..++...+.+.+++...+++++++.... .+.
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRsvM--N-ts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g~---- 346 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRSVM--N-TSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KGF---- 346 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHHHh--c-cCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hcC----
Confidence 356899999999999999999999996521 0 011122223345667888888888877777654332 111
Q ss_pred CCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh----cCccccCchHHHHccCCcEEEecCCCcc
Q 002427 509 PEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTGTL 584 (924)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~----~gilvk~~~~lE~lg~v~~i~fDKTGTL 584 (924)
.+.|...+++++-++-..+|..|-..+.++-..-.....+ .|.++|+.+.-|+||++.++.+||||||
T Consensus 347 --------~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTL 418 (1051)
T KOG0210|consen 347 --------GSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTL 418 (1051)
T ss_pred --------CCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCcc
Confidence 3567888899999999999999998888887776666543 4679999999999999999999999999
Q ss_pred ccCceEEEEEEecC----CCCHHHHHHHHHHHhcC-----------CCChHH----------------------------
Q 002427 585 TQGRATVTTAKVFT----KMDRGEFLTLVASAEAS-----------SEHPLA---------------------------- 621 (924)
Q Consensus 585 T~~~~~v~~~~~~~----~~~~~~~l~~~~~~~~~-----------s~hp~~---------------------------- 621 (924)
|+|+|.+++++... ....+++-+...++... ..||..
T Consensus 419 TqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sY 498 (1051)
T KOG0210|consen 419 TQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSY 498 (1051)
T ss_pred ccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEe
Confidence 99999999988642 22223333333333211 112322
Q ss_pred -------HHHHHHHHhcCCCCCCCCCCCC-CCCccccCCCCcccccccceeecCC-eEEEEEc--Ce--EEEEeeHhhHh
Q 002427 622 -------KAVVEYARHFHFFDDPSLNPDG-QSHSKESTGSGWLLDVSDFSALPGR-GIQCFIS--GK--QVLVGNRKLLN 688 (924)
Q Consensus 622 -------~ai~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-gv~~~~~--g~--~~~ig~~~~~~ 688 (924)
-|+++..+..|.....++...- .........+..++.+.+|++..++ |+.+.-. |+ -+..|....|.
T Consensus 499 QAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~VMs 578 (1051)
T KOG0210|consen 499 QAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVVMS 578 (1051)
T ss_pred ecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHHHh
Confidence 2222221111110000000000 0000111123455667788777654 6665443 33 23334443332
Q ss_pred hcCCCCChhhhHHHHHHHHcCCeEEEEEE---------------------------------------CCeEEEEEEecC
Q 002427 689 ESGITIPDHVESFVVELEESARTGILVAY---------------------------------------DDNLIGVMGIAD 729 (924)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------------------------~~~~lG~i~l~D 729 (924)
.-+...+..++.-.+++.+|.|++.+|. |++++|+.++||
T Consensus 579 -~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVED 657 (1051)
T KOG0210|consen 579 -GIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVED 657 (1051)
T ss_pred -cccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHH
Confidence 2233444455556677888999999886 568999999999
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------------------
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------------- 770 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--------------------------------------- 770 (924)
+++++++.+++.||++|||+||+|||+.+||+.||+..++.
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~S 737 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGES 737 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCch
Confidence 99999999999999999999999999999999999999985
Q ss_pred ---------------------eEEeccChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHHHhcCCceEEe-cCChHHHHHh
Q 002427 771 ---------------------DVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAI-GAGTDIAIEA 827 (924)
Q Consensus 771 ---------------------~v~a~~~P~~K~~~V~~lq~~-g~~v~~vGDg~nD~~al~~A~vgia~-~~~~~~a~~~ 827 (924)
.++||++|+||+++++.+|+. |+.|+.+|||-||+.|+++||+||++ |.....|.-+
T Consensus 738 l~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLA 817 (1051)
T KOG0210|consen 738 LEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLA 817 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchh
Confidence 289999999999999999975 88999999999999999999999999 5555667779
Q ss_pred cCEEEecCChhHHHHHHHH-HHHHHHHHHHHHHH
Q 002427 828 ADYVLMRNSLEDVIIAIDL-SRKTFARIRLNYIF 860 (924)
Q Consensus 828 ad~vl~~~~l~~l~~~i~~-~r~~~~~i~~n~~~ 860 (924)
||+.+ ..|+++-+++.+ ||..|++--+--+|
T Consensus 818 ADfSI--tqF~Hv~rLLl~HGR~SYkrsa~laqf 849 (1051)
T KOG0210|consen 818 ADFSI--TQFSHVSRLLLWHGRNSYKRSAKLAQF 849 (1051)
T ss_pred ccccH--HHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99999 559999999887 99999876654444
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=457.86 Aligned_cols=552 Identities=17% Similarity=0.201 Sum_probs=399.3
Q ss_pred HHHHHHHHHhhhhc--CCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEE
Q 002427 303 YFYSVGALLYGVVT--GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREI 380 (924)
Q Consensus 303 ~~~s~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i 380 (924)
.+|.++..+...++ ++.+.......++++....+.+.+|++.|++.++.+++ .++.|. +++. ...+.
T Consensus 61 N~yFl~~~il~~ip~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~~~ 129 (1151)
T KOG0206|consen 61 NLYFLFIAILQFIPLSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFVEK 129 (1151)
T ss_pred HHHHHHHHHHHcCcccccCccceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eeeee
Confidence 44444444444332 22333333344556666779999999999999988876 456666 3321 26888
Q ss_pred eCCCCCCCCEEEECCCCcccceEEEEe-----cceeeecccccCCCcceeccC---------------------------
Q 002427 381 DALLIQSGDTLKVLPGTKLPADGIVVW-----GTSYVNESMVTGEAVPVLKEI--------------------------- 428 (924)
Q Consensus 381 ~~~~l~~GDii~v~~G~~iP~Dg~vl~-----G~~~Vdes~LTGEs~pv~k~~--------------------------- 428 (924)
.+++|++||+|.+..++.+|||.++++ |.|+|+++.|+||+....|..
T Consensus 130 ~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~ 209 (1151)
T KOG0206|consen 130 KWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNA 209 (1151)
T ss_pred ccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcc
Confidence 999999999999999999999999998 668999999999998877632
Q ss_pred --------------------CCccccceeeec-ceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHHHhHHHH
Q 002427 429 --------------------NSPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPI 487 (924)
Q Consensus 429 --------------------g~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (924)
.+.++.|+.+.+ ..+...|+.+|.+|.+.+-. ..+..+++++++..++....+.++
T Consensus 210 ~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~---~~~~~Krs~ier~~n~~i~~~~~~ 286 (1151)
T KOG0206|consen 210 NLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNS---GKPPSKRSRIERKMNKIIILLFVL 286 (1151)
T ss_pred cHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHHhc---CCCccccchhhhhhhhhHHHHHHH
Confidence 112456666665 47788999999999886532 236677889999999988888888
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCCcccCCCC---ccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHH--------
Q 002427 488 VVTLALFTWLCWYVAGVLG--AYPEQWLPENG---THFVFALMFSISVVVIACPCALGLATPTAVMVATGVG-------- 554 (924)
Q Consensus 488 ~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~-------- 554 (924)
.++++++..+...++.... ..+..|..... ......+..++.++...+|..|...+.+.-.......
T Consensus 287 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~ 366 (1151)
T KOG0206|consen 287 LILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYD 366 (1151)
T ss_pred HHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhh
Confidence 7777777766554433211 11122222111 1234455666667777889988888877665554332
Q ss_pred --HhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEEEecCC-----CC--------------------------
Q 002427 555 --ANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----MD-------------------------- 601 (924)
Q Consensus 555 --~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~-------------------------- 601 (924)
....+.+|+.+..|+||+|++|++|||||||+|.|++.+|.+.+. .+
T Consensus 367 ~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 446 (1151)
T KOG0206|consen 367 EETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFED 446 (1151)
T ss_pred ccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceecc
Confidence 246789999999999999999999999999999999998865321 00
Q ss_pred ----------------HHHHHHHHHH--------------HhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccC
Q 002427 602 ----------------RGEFLTLVAS--------------AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKEST 651 (924)
Q Consensus 602 ----------------~~~~l~~~~~--------------~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (924)
..+++...+. +.+...+|.+.|+++.|++.|+....+.............
T Consensus 447 ~~~~~~~~~~~~~~~~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~ 526 (1151)
T KOG0206|consen 447 SRLVDGLWSSEPQAEDILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVE 526 (1151)
T ss_pred chhhccccccccCcchHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccc
Confidence 0112222221 1223567999999999999988653332221111111112
Q ss_pred CCCcccccccceeecCC----------eEEEEEcCeEEEEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEE----
Q 002427 652 GSGWLLDVSDFSALPGR----------GIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---- 717 (924)
Q Consensus 652 ~~~~~~~~~~~~~~~g~----------gv~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~---- 717 (924)
....++++.+|.+.+++ .+..++||++-.+-.+ +..++....+.-.+.+++++.+|.|++++|+
T Consensus 527 ~~y~lL~iLeF~S~RKRMSVIVR~p~g~i~LycKGADsvI~er--L~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~ 604 (1151)
T KOG0206|consen 527 ETYELLNVLEFNSTRKRMSVIVRDPDGRILLYCKGADSVIFER--LSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELD 604 (1151)
T ss_pred eeEEEEEEeccccccceeEEEEEcCCCcEEEEEcCcchhhHhh--hhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccC
Confidence 24556777788776544 4555666654333111 1111122223334567888999999999987
Q ss_pred ----------------------------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHH
Q 002427 718 ----------------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 763 (924)
Q Consensus 718 ----------------------------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~i 763 (924)
|+.++|.+++||+|+++++++|+.|++||||+||+|||+.+||.+|
T Consensus 605 e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNI 684 (1151)
T KOG0206|consen 605 EEEYEEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINI 684 (1151)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999
Q ss_pred HHHcCCc-------------------------------------------------------------------------
Q 002427 764 AREIGIQ------------------------------------------------------------------------- 770 (924)
Q Consensus 764 A~~~gi~------------------------------------------------------------------------- 770 (924)
|..|++.
T Consensus 685 g~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~ 764 (1151)
T KOG0206|consen 685 GYSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLE 764 (1151)
T ss_pred HHhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHH
Confidence 9988763
Q ss_pred -------eEEeccChhhHHHHHHHHhh-CCCEEEEEcCCcCCHHHHhcCCceEEec-CChHHHHHhcCEEEecCChhHHH
Q 002427 771 -------DVMADVMPAGKADAVRSFQK-DGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIAIEAADYVLMRNSLEDVI 841 (924)
Q Consensus 771 -------~v~a~~~P~~K~~~V~~lq~-~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~a~~~ad~vl~~~~l~~l~ 841 (924)
.++||++|.||+.+|+..++ .+..+++||||.||++|++.|||||+++ .+...|..+||+.+. .|+-+.
T Consensus 765 la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIa--qFrfL~ 842 (1151)
T KOG0206|consen 765 LAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIA--QFRFLE 842 (1151)
T ss_pred HHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhhhhhcccchHH--HHHHHh
Confidence 18999999999999999974 4789999999999999999999999996 556678889999994 477777
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 842 IAID-LSRKTFARIRLNYIFAMAYNVIAIPIA 872 (924)
Q Consensus 842 ~~i~-~~r~~~~~i~~n~~~~l~~n~~~i~~a 872 (924)
+++. .||..|.++.+.+.+.|..|+.....-
T Consensus 843 rLLLVHGhW~Y~R~a~~ilyfFYKNi~f~~~~ 874 (1151)
T KOG0206|consen 843 RLLLVHGHWSYIRLAKMILYFFYKNIAFTFTL 874 (1151)
T ss_pred hhheeecceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655 499999999999999999999876543
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=2.1e-34 Score=302.99 Aligned_cols=223 Identities=30% Similarity=0.557 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCe-EEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEe
Q 002427 329 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 407 (924)
Q Consensus 329 ~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~-~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~ 407 (924)
+++++++++.+++.+.++|+++.++++.+..+++ +.++ ||| .++++++++|+|||+|.+++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 4677888999999999999999999999988887 6666 677 68999999999999999999999999999999
Q ss_pred -cceeeecccccCCCcceecc-----CCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 002427 408 -GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 481 (924)
Q Consensus 408 -G~~~Vdes~LTGEs~pv~k~-----~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 481 (924)
|.+.||||.+|||+.|+.|. .|+.+++||.+.+|++.+.|+++|.+|..+++.+.+...+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999888888899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhcCccc
Q 002427 482 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 561 (924)
Q Consensus 482 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~~~~~gilv 561 (924)
.++++++++++++++++|++. ....+|...+.+++++++.+|||+|++++|+++..++.+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFN------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTG------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceec------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 999999999888888766552 11245677889999999999999999999999999999999999999
Q ss_pred cCchHHHH
Q 002427 562 KGGDALER 569 (924)
Q Consensus 562 k~~~~lE~ 569 (924)
|+++++|+
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.96 E-value=2.9e-30 Score=268.83 Aligned_cols=209 Identities=38% Similarity=0.575 Sum_probs=177.5
Q ss_pred CcEEEecCCCccccCceEEEEEEecCCCCHHHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCccccCC
Q 002427 573 IKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTG 652 (924)
Q Consensus 573 v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (924)
|++||||||||||+|++.+ . . .....++.++...+..+.||++.++..++.....
T Consensus 1 i~~i~fDktGTLt~~~~~v---~-~--~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~------------------- 55 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---A-P--PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQW------------------- 55 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---E-S--CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHH-------------------
T ss_pred CeEEEEecCCCcccCeEEE---E-e--ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccc-------------------
Confidence 6899999999999999999 1 1 5678899999999999999999999998876410
Q ss_pred CCcccccccceeecCCeEEEEEcCeEEEEeeHhhHhhcCCCCChhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCc
Q 002427 653 SGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 732 (924)
Q Consensus 653 ~~~~~~~~~~~~~~g~gv~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr 732 (924)
. ....+|.+..+.|+...+++. +. |+++++.+.+... .............+.+.+.++.+..++|.+.+.|++|
T Consensus 56 --~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (215)
T PF00702_consen 56 --S-KSLESFSEFIGRGISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLR 129 (215)
T ss_dssp --H-SCCEEEEEETTTEEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBH
T ss_pred --h-hhhhhheeeeecccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcch
Confidence 0 015678889999999999988 44 8888887654321 1112222334556777888888999999999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEecc--ChhhH--HHHHHHHhhCCCEEEEEcCCcCCHH
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV--MPAGK--ADAVRSFQKDGSIVAMVGDGINDSP 806 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--v~a~~--~P~~K--~~~V~~lq~~g~~v~~vGDg~nD~~ 806 (924)
|+++++|+.|+++|++++|+|||+..++.++++++||.+ +|+++ +|++| .++++.||.+++.|+|||||+||++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~ 209 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAP 209 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHH
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999987 99999 99999 9999999977778999999999999
Q ss_pred HHhcCC
Q 002427 807 ALAAAD 812 (924)
Q Consensus 807 al~~A~ 812 (924)
|+++||
T Consensus 210 al~~Ag 215 (215)
T PF00702_consen 210 ALKAAG 215 (215)
T ss_dssp HHHHSS
T ss_pred HHHhCc
Confidence 999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.67 E-value=9.9e-16 Score=135.43 Aligned_cols=124 Identities=26% Similarity=0.349 Sum_probs=110.9
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEeccChhhHHHHHHHHhhCCCE
Q 002427 717 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMADVMPAGKADAVRSFQKDGSI 794 (924)
Q Consensus 717 ~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--~v~a~~~P~~K~~~V~~lq~~g~~ 794 (924)
+-+++.+.++---.+=++++++|++|+.. +++.+.|||...+....|+-+||+ ++|+...|+.|.++++.|++.+++
T Consensus 17 ~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 17 KAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred ecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 34677888888889999999999999999 999999999999999999999997 699999999999999999999999
Q ss_pred EEEEcCCcCCHHHHhcCCceEEe-c--CChHHHHHhcCEEEecCChhHHHHH
Q 002427 795 VAMVGDGINDSPALAAADVGMAI-G--AGTDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vgia~-~--~~~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
|.|||||.||.+||+.||+||.. + +..+.+.++||+++ .+...+.++
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvi--k~i~e~ldl 145 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVL--KEIAEILDL 145 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhh--hhHHHHHHH
Confidence 99999999999999999999877 3 45677889999998 445555444
No 37
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.7e-13 Score=156.59 Aligned_cols=138 Identities=38% Similarity=0.645 Sum_probs=126.0
Q ss_pred CCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhhhcccCCCCCCCCcceeeee
Q 002427 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (924)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l 132 (924)
.||+|..|.+.+|.++...+|+.+..+++.++++.+.|+ ...+++.+.+.+++.||++....++.. ....+.+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~------~~~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEI------TASKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCcc------ccceeEE
Confidence 489999999999999999999999999999999999999 779999999999999999987654432 1237889
Q ss_pred eeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeeccc
Q 002427 133 TIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMN 200 (924)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~~ 200 (924)
++.||+|++|+..+|+.+++.+||.++.+.+....+.+.|||..++++.+.+.+++.| |.+.+.+
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~g---f~a~~i~ 138 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLG---FSAELIE 138 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcC---ccceehh
Confidence 9999999999999999999999999999999999999999999999999999999999 7665443
No 38
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.09 E-value=2.3e-10 Score=93.05 Aligned_cols=60 Identities=28% Similarity=0.606 Sum_probs=58.1
Q ss_pred eeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
+|+|+||+|++|+++|++.|.++|||.++++|+.+++++|.|++..+++++|.+.|+++|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999999999889999999999999
No 39
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.08 E-value=5.8e-10 Score=113.78 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=97.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe--------c-------cChhhHHHHHHHHhhCCCE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA--------D-------VMPAGKADAVRSFQKDGSI 794 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a--------~-------~~P~~K~~~V~~lq~~g~~ 794 (924)
+++|++++.|+.||+.+ ++.++||-....+..+++++|++++++ + ..|++|..+++.+++.|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 58999999999999975 999999999999999999999987776 1 3568999999999988878
Q ss_pred EEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHHHH
Q 002427 795 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLS 847 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~ 847 (924)
+.|+|||.||.+|++.|++||++.....+ ++.||=.-.-.+.+.+..++.++
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFHAPENV-IREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEecCCHHH-HHhCCCCCcccCHHHHHHHHHHH
Confidence 99999999999999999999999755444 44554443445688888877775
No 40
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.03 E-value=1.2e-09 Score=88.84 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.4
Q ss_pred EEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccc
Q 002427 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (924)
Q Consensus 49 ~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (924)
+|.|.||+|++|+.+++++|.+++||.++.+|+.++++.+.+++...+++++.+.++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 48899999999999999999999999999999999999999999888899999999999995
No 41
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.02 E-value=1.7e-09 Score=117.86 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=100.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhC-
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 791 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~-----------------~~P~~K~~~V~~lq~~- 791 (924)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.++++ +..+.|.+.++.+.++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 5899999999999999999999999998889999999999876652 2346899988888654
Q ss_pred C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 792 G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 792 g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
| ..+.++|||.||.+|++.|++||++ ++.+..++.||.++..+++..+..++.
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 3 5799999999999999999999999 788999999999999889998887664
No 42
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.97 E-value=6.3e-09 Score=101.61 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=94.9
Q ss_pred CCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhC----CC
Q 002427 718 DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD----GS 793 (924)
Q Consensus 718 ~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~----g~ 793 (924)
+++.++.+.+.|. . +|++|++.|+++.++||+....+..+.+++|+..+|... ..|.+.++.+.++ ..
T Consensus 22 ~~~~~~~~~~~~~----~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 22 NGEEIKAFNVRDG----Y--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SNKLIAFSDILEKLALAPE 93 (154)
T ss_pred CCcEEEEEechhH----H--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cchHHHHHHHHHHcCCCHH
Confidence 3445555544443 2 899999999999999999999999999999999888765 4566666666432 35
Q ss_pred EEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCC----hhHHHHHHH
Q 002427 794 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS----LEDVIIAID 845 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~----l~~l~~~i~ 845 (924)
.+.|+||+.||.++++.|++++++.++.+..+..||+++.++. |..+.+.+.
T Consensus 94 ~~~~vGDs~~D~~~~~~ag~~~~v~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 149 (154)
T TIGR01670 94 NVAYIGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCELLL 149 (154)
T ss_pred HEEEECCCHHHHHHHHHCCCeEecCCcCHHHHHhCCEEecCCCCCcHHHHHHHHHH
Confidence 6999999999999999999999999888889999999997554 444444433
No 43
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.94 E-value=3.9e-09 Score=87.70 Aligned_cols=68 Identities=44% Similarity=0.663 Sum_probs=63.9
Q ss_pred eeEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchh
Q 002427 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (924)
Q Consensus 45 ~~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (924)
|++.++.++||+|.+|+..++++|++++||..+.+++..+...+.++....+.+++.++++++||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 45678999999999999999999999999999999999999999999988899999999999999864
No 44
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.88 E-value=5.4e-09 Score=86.89 Aligned_cols=66 Identities=26% Similarity=0.540 Sum_probs=62.1
Q ss_pred eeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceee
Q 002427 129 VGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIR 197 (924)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~ 197 (924)
...++++||+|.+|+..++++|.+++||.++.+++..++..|.||+...+.++|.+.|++.| |++.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aG---y~~~ 68 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAG---YKVE 68 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcC---CCee
Confidence 35789999999999999999999999999999999999999999998899999999999999 7653
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.88 E-value=7.6e-09 Score=107.92 Aligned_cols=113 Identities=23% Similarity=0.340 Sum_probs=95.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhCC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKDG 792 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~-----------------~~P~~K~~~V~~lq~~g 792 (924)
+++|++++.++.|++.|+++.++||.....+..+.+.+|+..+|+. ..+..|..+++.+.++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999887752 12334778887665542
Q ss_pred ----CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHH
Q 002427 793 ----SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 793 ----~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
..+.|+||+.||.++++.|+++++++ +.+..++.||.++.++++..+..+
T Consensus 165 ~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 165 GISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 35899999999999999999999995 567788899999999998887654
No 46
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.85 E-value=1.3e-08 Score=100.12 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=83.5
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChh--hHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCce
Q 002427 737 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--GKADAVRSFQKDGSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 737 ~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~--~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vg 814 (924)
..|+.|++.|+++.++|+.+...+..+.+.+|+..+|....|. --..+++.+.-....++|+||+.||.++++.|+++
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCe
Confidence 5789999999999999999999999999999999888876443 22333333332335699999999999999999999
Q ss_pred EEecCChHHHHHhcCEEEecCC
Q 002427 815 MAIGAGTDIAIEAADYVLMRNS 836 (924)
Q Consensus 815 ia~~~~~~~a~~~ad~vl~~~~ 836 (924)
++|+++.+..++.||+|...++
T Consensus 121 ~am~nA~~~lk~~A~~I~~~~~ 142 (169)
T TIGR02726 121 VAVGDAVADVKEAAAYVTTARG 142 (169)
T ss_pred EECcCchHHHHHhCCEEcCCCC
Confidence 9999999999999999986544
No 47
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=92.11 Aligned_cols=132 Identities=21% Similarity=0.335 Sum_probs=107.1
Q ss_pred EEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhC---
Q 002427 715 VAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD--- 791 (924)
Q Consensus 715 va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~--- 791 (924)
+..+++.+=.|-..|- ..|+.|.+.||++.++||-+...++.=|+++||..+|-.. ++|....+.|.++
T Consensus 26 ~~~~Gee~KaFnv~DG------~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~--~dK~~a~~~L~~~~~l 97 (170)
T COG1778 26 YDENGEEIKAFNVRDG------HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI--SDKLAAFEELLKKLNL 97 (170)
T ss_pred EcCCCceeeeeeccCc------HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech--HhHHHHHHHHHHHhCC
Confidence 3334444444544443 5799999999999999999999999999999999999776 7899888888764
Q ss_pred -CCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCC----hhHHHHHHHHHHHHHHHH
Q 002427 792 -GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS----LEDVIIAIDLSRKTFARI 854 (924)
Q Consensus 792 -g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~----l~~l~~~i~~~r~~~~~i 854 (924)
-..|+++||..||.|+|+..++++|+.++....++.||+|+.... .+.+.++|..++..+...
T Consensus 98 ~~e~~ayiGDD~~Dlpvm~~vGls~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~~ 165 (170)
T COG1778 98 DPEEVAYVGDDLVDLPVMEKVGLSVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDEA 165 (170)
T ss_pred CHHHhhhhcCccccHHHHHHcCCcccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHHH
Confidence 346999999999999999999999999999999999999997643 666677777666655443
No 48
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.80 E-value=3.9e-08 Score=99.07 Aligned_cols=138 Identities=17% Similarity=0.258 Sum_probs=103.0
Q ss_pred CCeEEEEEECCeEEEE-EEe---cCCCcHhH---HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhH
Q 002427 709 ARTGILVAYDDNLIGV-MGI---ADPVKREA---AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGK 781 (924)
Q Consensus 709 g~~~i~va~~~~~lG~-i~l---~D~lr~~~---~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K 781 (924)
+.+.+.+-.|++++.- +.+ ..++++.. ...|+.|++.|+++.++||.....+..+++++|+..+|... ++|
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~--~~k 97 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQ--SNK 97 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecCC--CcH
Confidence 5667777777776631 111 11122222 26899999999999999999999999999999999888743 567
Q ss_pred HHHHHHHhhC-C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecC----ChhHHHHHHHHHH
Q 002427 782 ADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRN----SLEDVIIAIDLSR 848 (924)
Q Consensus 782 ~~~V~~lq~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~----~l~~l~~~i~~~r 848 (924)
...++.+.++ | ..++||||+.||.++++.|+++++++++.+..+..||+++-.+ .+..+.+.+...|
T Consensus 98 ~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~~~~ 172 (183)
T PRK09484 98 LIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVADAHPLLLPRADYVTRIAGGRGAVREVCDLLLLAQ 172 (183)
T ss_pred HHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEecCChhHHHHHhCCEEecCCCCCCHHHHHHHHHHHhc
Confidence 7666665432 3 4699999999999999999999999888888889999999532 3555555555444
No 49
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.78 E-value=5.1e-08 Score=102.51 Aligned_cols=131 Identities=25% Similarity=0.344 Sum_probs=101.6
Q ss_pred eEEEEEECCeEEEEEEecC-CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------
Q 002427 711 TGILVAYDDNLIGVMGIAD-PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------ 771 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D-~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------ 771 (924)
+.+++-.||+++- .| .+.+.+.++|++|++.|+++++.||.....+..+.+++|+..
T Consensus 4 kli~~DlDGTLl~----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~ 79 (230)
T PRK01158 4 KAIAIDIDGTITD----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKR 79 (230)
T ss_pred eEEEEecCCCcCC----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCE
Confidence 4566677888773 33 378999999999999999999999999999999999999851
Q ss_pred -------------------------EE------------------------------------------eccChh--hHH
Q 002427 772 -------------------------VM------------------------------------------ADVMPA--GKA 782 (924)
Q Consensus 772 -------------------------v~------------------------------------------a~~~P~--~K~ 782 (924)
.+ .+..|. .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg 159 (230)
T PRK01158 80 IFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKG 159 (230)
T ss_pred EEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChH
Confidence 00 011111 144
Q ss_pred HHHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 783 DAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 783 ~~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
.-++.+.+. ...++++||+.||.+|++.|++|++|+++.+.+++.||++..+++-..+.++++
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 444444322 135899999999999999999999999999999999999998888778877765
No 50
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.78 E-value=3.8e-08 Score=102.28 Aligned_cols=129 Identities=25% Similarity=0.271 Sum_probs=102.4
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--------------------
Q 002427 712 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-------------------- 771 (924)
Q Consensus 712 ~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-------------------- 771 (924)
.+++-.||+++. =..++.+++.++|++|++.|+++++.||-+...+..+++++++..
T Consensus 3 ~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~ 79 (215)
T TIGR01487 3 LVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLA 79 (215)
T ss_pred EEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEe
Confidence 456667888774 123488999999999999999999999999999999999999850
Q ss_pred ---------------------------------------------------------EEeccCh--hhHHHHHHHHhhC-
Q 002427 772 ---------------------------------------------------------VMADVMP--AGKADAVRSFQKD- 791 (924)
Q Consensus 772 ---------------------------------------------------------v~a~~~P--~~K~~~V~~lq~~- 791 (924)
.+..++| ..|...++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 159 (215)
T TIGR01487 80 NMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELL 159 (215)
T ss_pred cccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHh
Confidence 0112222 3677777766543
Q ss_pred C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHH
Q 002427 792 G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 792 g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
| ..++++||+.||.+|++.|+.|++|+++.+.+++.||++..+++-..+.++
T Consensus 160 ~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~ 214 (215)
T TIGR01487 160 GIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEV 214 (215)
T ss_pred CCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhh
Confidence 2 358999999999999999999999999999999999999977666666543
No 51
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.73 E-value=8.4e-08 Score=103.53 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=99.9
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-------------------- 770 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~-------------------- 770 (924)
+.+++-.||+++.- ...+.+.++++|++|++.|+++++.||.....+..+.+++|+.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 45666778888752 3468899999999999999999999999999999999999862
Q ss_pred ---------------------------------eEEec---------------------------------------cCh
Q 002427 771 ---------------------------------DVMAD---------------------------------------VMP 778 (924)
Q Consensus 771 ---------------------------------~v~a~---------------------------------------~~P 778 (924)
.++.. ..|
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 01110 000
Q ss_pred hhHHHHHHHHhh----------------------------------C-C---CEEEEEcCCcCCHHHHhcCCceEEecCC
Q 002427 779 AGKADAVRSFQK----------------------------------D-G---SIVAMVGDGINDSPALAAADVGMAIGAG 820 (924)
Q Consensus 779 ~~K~~~V~~lq~----------------------------------~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~ 820 (924)
++..++.+.+++ . | ..|+++|||.||.+||+.|+.|+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 000111122211 0 1 3489999999999999999999999999
Q ss_pred hHHHHHhcCEEEecCChhHHHHHHH
Q 002427 821 TDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 821 ~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
.+.+|+.||+|..+++=..+.++++
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999998888788877765
No 52
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.69 E-value=9.3e-08 Score=103.27 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=98.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 771 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------- 771 (924)
+.+++-.||+++. -...+.+.++++|++|++.|+++++.||-+...+..+.+++|+..
T Consensus 3 kli~~DlDGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~ 79 (272)
T PRK15126 3 RLAAFDMDGTLLM---PDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLH 79 (272)
T ss_pred cEEEEeCCCcCcC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEE
Confidence 3556667888774 134589999999999999999999999999999999999999850
Q ss_pred ------------------------------EEe-----------------------------------------------
Q 002427 772 ------------------------------VMA----------------------------------------------- 774 (924)
Q Consensus 772 ------------------------------v~a----------------------------------------------- 774 (924)
++.
T Consensus 80 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~ 159 (272)
T PRK15126 80 RQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQ 159 (272)
T ss_pred eecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHH
Confidence 000
Q ss_pred ---------------------ccChh--hHHHHHHHHhhC-C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHh
Q 002427 775 ---------------------DVMPA--GKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 827 (924)
Q Consensus 775 ---------------------~~~P~--~K~~~V~~lq~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ 827 (924)
+++|. .|..-++.|.+. | ..|+++|||.||.+||+.|+.|+||+++.+.+|+.
T Consensus 160 ~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 160 IQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 00000 122222222111 1 35899999999999999999999999999999999
Q ss_pred cCE--EEecCChhHHHHHHH
Q 002427 828 ADY--VLMRNSLEDVIIAID 845 (924)
Q Consensus 828 ad~--vl~~~~l~~l~~~i~ 845 (924)
||. +..+++-..+.++++
T Consensus 240 A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 240 LPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCCeecCCCcchHHHHHHH
Confidence 996 666777777777664
No 53
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.69 E-value=8.1e-08 Score=98.54 Aligned_cols=103 Identities=27% Similarity=0.336 Sum_probs=84.2
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-----------------ccChhhHHHHHHHHhhC
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-----------------DVMPAGKADAVRSFQKD 791 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a-----------------~~~P~~K~~~V~~lq~~ 791 (924)
.+++|++.+.++.+|++|.+++++||-...-+..+|+++|++.+++ .+..+.|...++.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999984222 23347899888766653
Q ss_pred -CC---EEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEE
Q 002427 792 -GS---IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVL 832 (924)
Q Consensus 792 -g~---~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl 832 (924)
|. .+.++|||.||.|||+.|+.++++..... .+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~~-l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKPK-LRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCHH-HHHHHHHhc
Confidence 54 48999999999999999999999975433 444555444
No 54
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.69 E-value=8.6e-08 Score=98.84 Aligned_cols=113 Identities=22% Similarity=0.380 Sum_probs=92.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec---------------cChhhHHHHHHHHhhCCCE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------------VMPAGKADAVRSFQKDGSI 794 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~---------------~~P~~K~~~V~~lq~~g~~ 794 (924)
++.|++++.++.|++. +++.++|+-....+..+.+++|+.++|+. ..|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 4689999999999999 99999999999999999999999765432 2478899999999888889
Q ss_pred EEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCE-EEecCChhHHHHHHH
Q 002427 795 VAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY-VLMRNSLEDVIIAID 845 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~-vl~~~~l~~l~~~i~ 845 (924)
+.||||+.||.++.+.|++|+..+.........++. ++ +++..+...+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 999999999999999999999987654444445665 44 56777765544
No 55
>PRK10976 putative hydrolase; Provisional
Probab=98.67 E-value=1.5e-07 Score=101.22 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 771 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------- 771 (924)
+.+++-.||+++-- ...+.+.++++|+++++.|+++++.||.....+..+.+++|+..
T Consensus 3 kli~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~ 79 (266)
T PRK10976 3 QVVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIF 79 (266)
T ss_pred eEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEeh
Confidence 45666678887732 33588999999999999999999999999999999999999750
Q ss_pred -------------------------------EEe-cc------------------------------------ChhhHHH
Q 002427 772 -------------------------------VMA-DV------------------------------------MPAGKAD 783 (924)
Q Consensus 772 -------------------------------v~a-~~------------------------------------~P~~K~~ 783 (924)
++. +. .+++..+
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~ 159 (266)
T PRK10976 80 SHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLP 159 (266)
T ss_pred hhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHH
Confidence 110 00 0111111
Q ss_pred HHHHHhh----------------------------------C-C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHH
Q 002427 784 AVRSFQK----------------------------------D-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAI 825 (924)
Q Consensus 784 ~V~~lq~----------------------------------~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~ 825 (924)
+.+.+++ . | ..|+++||+.||.+||+.|+.|+||+++.+.+|
T Consensus 160 ~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 160 LEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHH
Confidence 1222221 0 1 348999999999999999999999999999999
Q ss_pred HhcC--EEEecCChhHHHHHHH
Q 002427 826 EAAD--YVLMRNSLEDVIIAID 845 (924)
Q Consensus 826 ~~ad--~vl~~~~l~~l~~~i~ 845 (924)
+.|| .|..+++=..+.++++
T Consensus 240 ~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 240 DLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HhCCCCeecccCchHHHHHHHH
Confidence 9988 6777777777877765
No 56
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.64 E-value=2.1e-07 Score=100.01 Aligned_cols=133 Identities=26% Similarity=0.389 Sum_probs=103.7
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------- 771 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------- 771 (924)
+.+++-.||+++.- ..++.+.++++|+++++.|+++++.||-....+..+.+++++..
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~ 80 (264)
T COG0561 4 KLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQ 80 (264)
T ss_pred eEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEee
Confidence 45566667665542 22389999999999999999999999999999999999999860
Q ss_pred ------------------------EE------------------------------------------------------
Q 002427 772 ------------------------VM------------------------------------------------------ 773 (924)
Q Consensus 772 ------------------------v~------------------------------------------------------ 773 (924)
++
T Consensus 81 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T COG0561 81 KPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVE 160 (264)
T ss_pred ecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHH
Confidence 00
Q ss_pred --------------------eccCh--hhHHHHHHHHhh-CCC---EEEEEcCCcCCHHHHhcCCceEEecCChHHHHHh
Q 002427 774 --------------------ADVMP--AGKADAVRSFQK-DGS---IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA 827 (924)
Q Consensus 774 --------------------a~~~P--~~K~~~V~~lq~-~g~---~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ 827 (924)
-+..| .+|...++.+.+ .|- .|+++||+.||.+||+.|+.|||||++.+.+++.
T Consensus 161 ~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~ 240 (264)
T COG0561 161 ALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKEL 240 (264)
T ss_pred HHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhh
Confidence 11111 145555555444 232 4999999999999999999999999999999999
Q ss_pred cCEEEecCChhHHHHHHHH
Q 002427 828 ADYVLMRNSLEDVIIAIDL 846 (924)
Q Consensus 828 ad~vl~~~~l~~l~~~i~~ 846 (924)
||++...++-..+...++.
T Consensus 241 A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 241 ADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred CCcccCCccchHHHHHHHH
Confidence 9988888888888887764
No 57
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.59 E-value=2.7e-07 Score=96.68 Aligned_cols=120 Identities=26% Similarity=0.351 Sum_probs=94.1
Q ss_pred ECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-------------------------
Q 002427 717 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------------- 771 (924)
Q Consensus 717 ~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------------- 771 (924)
.|++++. =...+.+.++++|++|++.|+++++.||.+...+..+.+++|+..
T Consensus 5 lDGTLl~---~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~ 81 (225)
T TIGR01482 5 IDGTLTD---PNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYLE 81 (225)
T ss_pred ccCccCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecccC
Confidence 4555552 123478899999999999999999999999999999999998630
Q ss_pred --------------------------------------------------E-------EeccCh--hhHHHHHHHHhhC-
Q 002427 772 --------------------------------------------------V-------MADVMP--AGKADAVRSFQKD- 791 (924)
Q Consensus 772 --------------------------------------------------v-------~a~~~P--~~K~~~V~~lq~~- 791 (924)
+ +.+..| ..|..-++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 161 (225)
T TIGR01482 82 EEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKL 161 (225)
T ss_pred HHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHh
Confidence 0 011222 2566666666543
Q ss_pred C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhH
Q 002427 792 G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLED 839 (924)
Q Consensus 792 g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~ 839 (924)
| ..++++||+.||.+|++.|++|++|+++.+..++.||.|..+++-..
T Consensus 162 ~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G 212 (225)
T TIGR01482 162 GIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEG 212 (225)
T ss_pred CCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCc
Confidence 2 46999999999999999999999999999999999999987776666
No 58
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.56 E-value=2.4e-07 Score=95.13 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=82.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------------cChhhHHHHHHHHhhC-
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------------VMPAGKADAVRSFQKD- 791 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~-----------------~~P~~K~~~V~~lq~~- 791 (924)
+++|++.+.++.|++.|+++.++|+-....+..+++.+|+..+++. ..|..|.+.++.+.++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999876542 2345677777776543
Q ss_pred ---CCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcC
Q 002427 792 ---GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD 829 (924)
Q Consensus 792 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad 829 (924)
...+.|+||+.||.++++.|+++++++.+....+.++|
T Consensus 160 ~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 160 NPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred CCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 24599999999999999999999999865555555555
No 59
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.53 E-value=1.1e-06 Score=94.99 Aligned_cols=52 Identities=33% Similarity=0.406 Sum_probs=47.7
Q ss_pred EEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 794 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
.++++||+.||.+|++.|++|++||++.+..++.||.+..+++-..+.++++
T Consensus 217 e~i~~GD~~NDi~m~~~ag~~vamgna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 217 NVVAFGDNFNDISMLEAAGLGVAMGNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred HeEEeCCChhhHHHHHhcCceEEecCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 4899999999999999999999999998989999999998888888887775
No 60
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.46 E-value=5.3e-07 Score=95.88 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=96.1
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------------------------
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD------------------------------------ 771 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~------------------------------------ 771 (924)
...+.+++.+++++|+++|+++++.||.....+..+.+++++..
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 45578999999999999999999999999999999999999740
Q ss_pred --------------------------------------------------------------------------------
Q 002427 772 -------------------------------------------------------------------------------- 771 (924)
Q Consensus 772 -------------------------------------------------------------------------------- 771 (924)
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence
Q ss_pred ---EEeccCh--hhHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHH
Q 002427 772 ---VMADVMP--AGKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVII 842 (924)
Q Consensus 772 ---v~a~~~P--~~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~ 842 (924)
.+-.++| ..|..-++.+.+. ...++++||+.||.+||+.++.|++|+++++..++.||.+....+=..+.+
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~i~~~~~~~gv~~ 252 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADYITPSNNDDGVAK 252 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEESSGTCTHHHH
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCEEecCCCCChHHH
Confidence 1123333 4688877777642 356999999999999999999999999999999999999997755566665
Q ss_pred HH
Q 002427 843 AI 844 (924)
Q Consensus 843 ~i 844 (924)
+|
T Consensus 253 ~i 254 (254)
T PF08282_consen 253 AI 254 (254)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 61
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.44 E-value=3.3e-07 Score=87.90 Aligned_cols=89 Identities=26% Similarity=0.413 Sum_probs=76.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEecc-------------------ChhhHHHHHHHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADV-------------------MPAGKADAVRSF 788 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--v~a~~-------------------~P~~K~~~V~~l 788 (924)
.+-|++++.++.|++.|.++.++||--..-+..||.++||+. +||+. ....|.++++.+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 467999999999999999999999999999999999999984 55542 235799999999
Q ss_pred hhC--CCEEEEEcCCcCCHHHHhcCCceEEec
Q 002427 789 QKD--GSIVAMVGDGINDSPALAAADVGMAIG 818 (924)
Q Consensus 789 q~~--g~~v~~vGDg~nD~~al~~A~vgia~~ 818 (924)
++. -..++|||||.||.+|+..||.=|+.|
T Consensus 168 rk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 168 RKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HhCCChheeEEecCCccccccCCchhhhhccC
Confidence 874 347999999999999999977766665
No 62
>PLN02887 hydrolase family protein
Probab=98.44 E-value=1.2e-06 Score=102.31 Aligned_cols=52 Identities=31% Similarity=0.404 Sum_probs=48.3
Q ss_pred EEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 794 IVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
.|+++|||.||.+||+.|+.|||||++.+.+|+.||+|..+++=..+.++++
T Consensus 525 eviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 525 EIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred HEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 4899999999999999999999999999999999999998888888887775
No 63
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.44 E-value=9.8e-07 Score=94.39 Aligned_cols=51 Identities=37% Similarity=0.483 Sum_probs=45.0
Q ss_pred CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHH
Q 002427 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 793 ~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
..++++||+.||.+|++.|+.|++|+++.+..++.||+++.+++-..+..+
T Consensus 205 ~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 205 EDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKALADYVTDSNNEDGVALA 255 (256)
T ss_pred HHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHhCCEEecCCCCcchhhh
Confidence 358999999999999999999999999999999999999987776666543
No 64
>PLN02954 phosphoserine phosphatase
Probab=98.43 E-value=1.9e-06 Score=90.20 Aligned_cols=112 Identities=26% Similarity=0.384 Sum_probs=86.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEec-------------------cChhhHHHHHHHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DVMAD-------------------VMPAGKADAVRSF 788 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--~v~a~-------------------~~P~~K~~~V~~l 788 (924)
+++|+++++++.|++.|+++.++||.....+..+.+.+|+. ++|+. ..+..|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 47899999999999999999999999999999999999996 46642 1123588888877
Q ss_pred hhC--CCEEEEEcCCcCCHHHHhc--CCceEEecCC--hHHHHHhcCEEEecCChhHHHHH
Q 002427 789 QKD--GSIVAMVGDGINDSPALAA--ADVGMAIGAG--TDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 789 q~~--g~~v~~vGDg~nD~~al~~--A~vgia~~~~--~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
.++ ...+.|+||+.||..|.+. ++++++.|.. .+.....+|+++ +++..+...
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFV--TDFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEE--CCHHHHHHh
Confidence 654 2469999999999999777 5666666632 233455689998 567776654
No 65
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.30 E-value=4.7e-06 Score=86.44 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEec-----------cCh------------hhHHHH
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMAD-----------VMP------------AGKADA 784 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi-~~v~a~-----------~~P------------~~K~~~ 784 (924)
-+++|++++.++.|++.|+++.++||........+.+.++. ..+++. ..| ..|..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 46899999999999999999999999999999999888743 344431 113 358999
Q ss_pred HHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 785 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 785 V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
++.++..+..+.|+|||.||..|++.||+.++-+.-.+..++.---...=+++..+...++
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 9999887888999999999999999999987765211212211111121256777766553
No 66
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.24 E-value=2.3e-06 Score=87.13 Aligned_cols=77 Identities=30% Similarity=0.508 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEec-------------cChh-h--HHHHHHHH------
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD-------------VMPA-G--KADAVRSF------ 788 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--v~a~-------------~~P~-~--K~~~V~~l------ 788 (924)
+++++.|+.++++|++++++||+....+..+++.+|++. +++. .+|. + |.+.++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999985 3332 2333 3 99999999
Q ss_pred hhCCCEEEEEcCCcCCHHHHh
Q 002427 789 QKDGSIVAMVGDGINDSPALA 809 (924)
Q Consensus 789 q~~g~~v~~vGDg~nD~~al~ 809 (924)
+.....+.++|||.||.|||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 445778999999999999986
No 67
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.22 E-value=2.4e-06 Score=85.79 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=69.3
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-------------------ccChhhHHHHHHHHhhC
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-------------------DVMPAGKADAVRSFQKD 791 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a-------------------~~~P~~K~~~V~~lq~~ 791 (924)
++|++++.++.+++.|++++++||.....+..+++.+|+..+++ ...+..|...++.++++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~ 153 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEE 153 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 12347899999887654
Q ss_pred ----CCEEEEEcCCcCCHHHHhcC
Q 002427 792 ----GSIVAMVGDGINDSPALAAA 811 (924)
Q Consensus 792 ----g~~v~~vGDg~nD~~al~~A 811 (924)
...+.++|||.||.+|++.|
T Consensus 154 ~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCCHHHHHHHhcC
Confidence 34689999999999999865
No 68
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.20 E-value=4.4e-06 Score=84.69 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEec-----------c----------Ch--hhH
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMAD-----------V----------MP--AGK 781 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a~-----------~----------~P--~~K 781 (924)
-+++|++.+.++.|++.|+++.++|+.+......+.+..|+.+ +++. . .| ..|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 3789999999999999999999999999999999999999864 3321 1 11 259
Q ss_pred HHHHHHHhhC-CCEEEEEcCCcCCHHHHhcCCceEE
Q 002427 782 ADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMA 816 (924)
Q Consensus 782 ~~~V~~lq~~-g~~v~~vGDg~nD~~al~~A~vgia 816 (924)
.++++.++++ ...+.|+|||.||..|.+.||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8889999999999999999887554
No 69
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.19 E-value=5.9e-06 Score=84.88 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=77.6
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec------------------cChhhHHHHHHHHh
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD------------------VMPAGKADAVRSFQ 789 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~------------------~~P~~K~~~V~~lq 789 (924)
...++|++.+.++.+++.|++++++||-....+..+++.+|++++++. +.++.|...++.+.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999876543 22367888787765
Q ss_pred h-CC---CEEEEEcCCcCCHHHHhcCCceEEecC
Q 002427 790 K-DG---SIVAMVGDGINDSPALAAADVGMAIGA 819 (924)
Q Consensus 790 ~-~g---~~v~~vGDg~nD~~al~~A~vgia~~~ 819 (924)
+ .+ ..+.++||+.+|.|+++.|+.++++..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 4 33 258999999999999999999998863
No 70
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.16 E-value=9.6e-06 Score=84.89 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=88.8
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec---------cChh--hHHHHHHHHhhCCCEEEE
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------VMPA--GKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~---------~~P~--~K~~~V~~lq~~g~~v~~ 797 (924)
.++.|++.+.++.|++.|+++.++||........+.+.+|+.+.|.. ..|. --..+++.++.....+.|
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 46889999999999999999999999999999999999998654322 2222 113444555444567999
Q ss_pred EcCCcCCHHHHhcCCc-eEEecC----ChHHHHHhcCEEEecCChhHHHHHHHHH
Q 002427 798 VGDGINDSPALAAADV-GMAIGA----GTDIAIEAADYVLMRNSLEDVIIAIDLS 847 (924)
Q Consensus 798 vGDg~nD~~al~~A~v-gia~~~----~~~~a~~~ad~vl~~~~l~~l~~~i~~~ 847 (924)
+||+.||..+.+.+++ +|.+.. ..+.....+|.++ +++..+...+..+
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999998 455532 2344456788888 7899998877654
No 71
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.13 E-value=9.6e-06 Score=84.46 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=83.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEec---c--------C--h----------hhHHHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMAD---V--------M--P----------AGKADA 784 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--v~a~---~--------~--P----------~~K~~~ 784 (924)
+++|++.+.++.|++.|+++.++||-....+..+.+.+ +.. +++. . . | ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 58999999999999999999999999999999999887 643 5432 1 1 1 248899
Q ss_pred HHHHhhCCCEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHh--cCEEEecCChhHHHHHH
Q 002427 785 VRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEA--ADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 785 V~~lq~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~--ad~vl~~~~l~~l~~~i 844 (924)
++.++.....+.|+|||.||..|.+.||+.++-+.-.+.+.+. +.+.+ ++|..+...+
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~~~l~~~~~~~~~~~~~~--~~f~ei~~~l 212 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFARDFLITKCEELGIPYTPF--ETFHDVQTEL 212 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeHHHHHHHHHHcCCCcccc--CCHHHHHHHH
Confidence 9988877778999999999999999999977743111222222 33333 5677766654
No 72
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.11 E-value=1.5e-05 Score=83.04 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=90.9
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----e-cc------ChhhHHHHHHHHhhCCCEEE
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----A-DV------MPAGKADAVRSFQKDGSIVA 796 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a-~~------~P~~K~~~V~~lq~~g~~v~ 796 (924)
...+-|+++++++.|+++|++..++|+++...+..+.+..|+..+| + .- .|+......+.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4467899999999999999999999999999999999999998644 2 22 23444455555544433699
Q ss_pred EEcCCcCCHHHHhcCC---ceEEecC--ChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 797 MVGDGINDSPALAAAD---VGMAIGA--GTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~---vgia~~~--~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
||||..+|..|-++|+ ||+..|. ........+|+++ +++..|...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999998 6677773 4556677799999 77888776553
No 73
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.06 E-value=3.3e-05 Score=83.24 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=49.0
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 709 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 709 g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
..+.++.-.||+++.- ...+-+.++++|++|++.|+++++.||-....+..+++++|++
T Consensus 6 ~~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3566777788888741 3345678999999999999999999999999999999999873
No 74
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.00 E-value=3.2e-05 Score=79.68 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=82.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----ec-----cChh--hHHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----AD-----VMPA--GKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a~-----~~P~--~K~~~V~~lq~~g~~v~~v 798 (924)
++.|++.+++++|++.|+++.++|+.+...+..+-+.+|+.+.| +. ..|. -=..+++.++-....++||
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMV 154 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEE
Confidence 67899999999999999999999999999999999999996432 21 1222 1123333343335679999
Q ss_pred cCCcCCHHHHhcCCceE---EecC--ChHHHHHhcCEEEecCChhHHHHHH
Q 002427 799 GDGINDSPALAAADVGM---AIGA--GTDIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 799 GDg~nD~~al~~A~vgi---a~~~--~~~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
||+.+|..+-+++++.. ..|. ..+...+.+|+++ +++..+..++
T Consensus 155 gD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 155 GDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred cCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 99999999999999763 3342 3345567799988 6677776554
No 75
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.91 E-value=6.5e-05 Score=80.27 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=43.8
Q ss_pred EEEEEcCCcCCHHHHhcCCceEEecCCh---HHHHHh--c-CEEEecCChhHHHHHHH
Q 002427 794 IVAMVGDGINDSPALAAADVGMAIGAGT---DIAIEA--A-DYVLMRNSLEDVIIAID 845 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~vgia~~~~~---~~a~~~--a-d~vl~~~~l~~l~~~i~ 845 (924)
.++++||+.||.+|++.|+.|+||+++. +..++. | ++|..+++-..+.++++
T Consensus 196 ~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 196 KVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred eEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 4999999999999999999999999987 467775 4 47777778888877765
No 76
>PRK08238 hypothetical protein; Validated
Probab=97.91 E-value=0.00013 Score=84.04 Aligned_cols=93 Identities=27% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEe-----ccChhhHHHHHHHHhhCCCEEEEEcCCcC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI-QDVMA-----DVMPAGKADAVRSFQKDGSIVAMVGDGIN 803 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi-~~v~a-----~~~P~~K~~~V~~lq~~g~~v~~vGDg~n 803 (924)
|++|++.+.+++++++|+++.++|+-+...+..+++++|+ +.+.+ ++.|+.|.+.++....++ .+.++||..|
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~~-~~~yvGDS~~ 150 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGER-GFDYAGNSAA 150 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCcc-CeeEecCCHH
Confidence 4789999999999999999999999999999999999997 66654 356778877665433222 2678999999
Q ss_pred CHHHHhcCCceEEecCChHH
Q 002427 804 DSPALAAADVGMAIGAGTDI 823 (924)
Q Consensus 804 D~~al~~A~vgia~~~~~~~ 823 (924)
|.|+++.|+-.++++.+...
T Consensus 151 Dlp~~~~A~~av~Vn~~~~l 170 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPGV 170 (479)
T ss_pred HHHHHHhCCCeEEECCCHHH
Confidence 99999999999999865443
No 77
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.90 E-value=5.8e-05 Score=78.31 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=82.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----c----Ch--hhHHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----V----MP--AGKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~-----~----~P--~~K~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+.....+..+-+..|+.+.|.. . .| +--..+++.+.-....++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 3779999999999999999999999999999999999999864421 1 22 22233444443334568999
Q ss_pred cCCcCCHHHHhcCCce---EEecCC-h-HHHHHhcCEEEecCChhHHHHHH
Q 002427 799 GDGINDSPALAAADVG---MAIGAG-T-DIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 799 GDg~nD~~al~~A~vg---ia~~~~-~-~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
||..+|..|-++|++- +..|.. . +.....+|.++ +++..+...+
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 9999999999999974 334422 2 23345689887 6788877654
No 78
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.83 E-value=0.013 Score=71.99 Aligned_cols=68 Identities=31% Similarity=0.513 Sum_probs=57.6
Q ss_pred CCeeEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchh
Q 002427 43 DGMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (924)
Q Consensus 43 ~~~~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (924)
....+..+.+.||+|++|.+++++.+.+.+||.++++++.+++..+.+++.. . +++.+.+++.||++.
T Consensus 50 ~~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 50 VSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLR 117 (741)
T ss_pred CCCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcccccc
Confidence 3444567899999999999999999999999999999999999999887652 3 677778888899764
No 79
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.80 E-value=3.9e-05 Score=91.49 Aligned_cols=67 Identities=46% Similarity=0.772 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCC-hHhHHHHHHhcccchhh
Q 002427 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVK-DEDIKNAIEDAGFEAEI 113 (924)
Q Consensus 46 ~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 113 (924)
++.++.++||+|++|++++| ++++++||.++++|+.++++.+.+++...+ ++++.+.+++.||.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 45789999999999999999 999999999999999999999999987666 78999999999997653
No 80
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.79 E-value=0.00011 Score=77.36 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhC-C---CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcC----EEEecCChhHHHHHHH
Q 002427 780 GKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAAD----YVLMRNSLEDVIIAID 845 (924)
Q Consensus 780 ~K~~~V~~lq~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad----~vl~~~~l~~l~~~i~ 845 (924)
.|...++.+.++ | ..++++||+.||.+|++.++.|++|+++.+..++.|| ++.-.++=..+.++|+
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHH
Confidence 566666666442 2 2589999999999999999999999999999999999 6665666666777664
No 81
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.78 E-value=8.2e-05 Score=70.47 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=69.0
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEe-----------------------ccChh
Q 002427 727 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMA-----------------------DVMPA 779 (924)
Q Consensus 727 l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~----~v~a-----------------------~~~P~ 779 (924)
...++.+++++.+++|++.|++++++||.....+..+.+++|+. .+++ +-.|+
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999983 3332 22333
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHHHhc-CCceEE
Q 002427 780 GKADAVRSFQKDGSIVAMVGDGINDSPALAA-ADVGMA 816 (924)
Q Consensus 780 ~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~-A~vgia 816 (924)
.+..+.+.+......+.++||+.||..+++. ..-+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 4444555544445679999999999999998 444443
No 82
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.76 E-value=0.00011 Score=78.96 Aligned_cols=116 Identities=25% Similarity=0.272 Sum_probs=83.7
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-----eccChhhHH--HHHHHH-hh---CCCEEE
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-----ADVMPAGKA--DAVRSF-QK---DGSIVA 796 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~-----a~~~P~~K~--~~V~~l-q~---~g~~v~ 796 (924)
..++.|++.++++.|++.|+++.++|+-+...+..+.++.|+...| +...|..|. +.++.+ ++ ....+.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 3468899999999999999999999999999999999999986533 222233332 223222 22 345699
Q ss_pred EEcCCcCCHHHHhcCCce-EEe--cC--ChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 797 MVGDGINDSPALAAADVG-MAI--GA--GTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vg-ia~--~~--~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
||||+.||..+.+.|++. +++ |. ..+.....+|.++ +++..+..++.
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 999999999999999973 343 32 2334455799988 67888776543
No 83
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.73 E-value=0.00017 Score=77.14 Aligned_cols=130 Identities=18% Similarity=0.302 Sum_probs=93.2
Q ss_pred CeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCc----------------
Q 002427 710 RTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQ---------------- 770 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~l--~D~lr~~~~~~I~~L~~-~gi~v~mlTGD~~~ta~~iA~~~gi~---------------- 770 (924)
.+.+++-+||+++-...= .-.+-++++++|+.|++ .|+.++++||........+.+.+++.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~ 93 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKT 93 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCe
Confidence 467888899988842110 11456899999999998 79999999999999999888777642
Q ss_pred ------------------------------------e---------------------------------EEeccChh--
Q 002427 771 ------------------------------------D---------------------------------VMADVMPA-- 779 (924)
Q Consensus 771 ------------------------------------~---------------------------------v~a~~~P~-- 779 (924)
. .+.++.|.
T Consensus 94 ~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~ 173 (266)
T PRK10187 94 HIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGT 173 (266)
T ss_pred eeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCC
Confidence 0 11122222
Q ss_pred hHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhcC----CceEEecCChHHHHHhcCEEEecCChhHHHHHHH
Q 002427 780 GKADAVRSFQKD----GSIVAMVGDGINDSPALAAA----DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 780 ~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A----~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
+|...++.+.+. ...++++||+.||.+|++.+ +.||+||++. ..|++.| ++...+...+.
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~----~~A~~~l--~~~~~v~~~L~ 241 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA----TQASWRL--AGVPDVWSWLE 241 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC----CcCeEeC--CCHHHHHHHHH
Confidence 555555554432 24689999999999999999 9999999775 3578877 46666665554
No 84
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.65 E-value=0.00032 Score=75.28 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=82.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---Ch-hhHHHHHHHH-hh---CCCEEEEEcCC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---MP-AGKADAVRSF-QK---DGSIVAMVGDG 801 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~---~P-~~K~~~V~~l-q~---~g~~v~~vGDg 801 (924)
++.|++.++++.|++.|+++.++|+.+...+..+-+.+|+.+.|..+ .+ ..|.+.+..+ ++ ....++||||.
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 57899999999999999999999999999999999999997643221 11 1233443333 32 23469999999
Q ss_pred cCCHHHHhcCCceEE---ecCCh--HHHHHhcCEEEecCChhHHHHHH
Q 002427 802 INDSPALAAADVGMA---IGAGT--DIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 802 ~nD~~al~~A~vgia---~~~~~--~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
.+|..+-++|++-.. .|... +.....+|+++ +++..|...+
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 999999999997632 33222 23344689988 7788887765
No 85
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.63 E-value=0.00039 Score=73.96 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=85.8
Q ss_pred EEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce---------------------
Q 002427 713 ILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--------------------- 771 (924)
Q Consensus 713 i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--------------------- 771 (924)
++.-.|++++.---=..+..|...++++++++.|+.+++.||-.....+.+.+++++..
T Consensus 4 i~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~ 83 (249)
T TIGR01485 4 LVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPD 83 (249)
T ss_pred EEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCC
Confidence 34445677762100145677999999999999999999999999999999998888640
Q ss_pred ----------------------------------------E----------------------------Ee-----ccCh
Q 002427 772 ----------------------------------------V----------------------------MA-----DVMP 778 (924)
Q Consensus 772 ----------------------------------------v----------------------------~a-----~~~P 778 (924)
+ ++ ...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~ 163 (249)
T TIGR01485 84 QHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILP 163 (249)
T ss_pred HHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEe
Confidence 0 00 1222
Q ss_pred --hhHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhc-CCceEEecCChHHHHHhcC
Q 002427 779 --AGKADAVRSFQKD----GSIVAMVGDGINDSPALAA-ADVGMAIGAGTDIAIEAAD 829 (924)
Q Consensus 779 --~~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~-A~vgia~~~~~~~a~~~ad 829 (924)
..|...++.+.+. ...|+++||+.||.+|++. ++.|++|+++.+..++.++
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~ 221 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYD 221 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHH
Confidence 2566666666442 2469999999999999998 6799999999888886543
No 86
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.63 E-value=0.00018 Score=74.42 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=79.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----ec-----cChhhH--HHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----AD-----VMPAGK--ADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a~-----~~P~~K--~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+-+...+..+.+..|+...| +. ..|.-. ....+.+.-....++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 57899999999999999999999999999999999999986433 21 122111 22223332234569999
Q ss_pred cCCcCCHHHHhcCCceEE-e--cCC--hHHHHHhcCEEEecCChhHHHH
Q 002427 799 GDGINDSPALAAADVGMA-I--GAG--TDIAIEAADYVLMRNSLEDVII 842 (924)
Q Consensus 799 GDg~nD~~al~~A~vgia-~--~~~--~~~a~~~ad~vl~~~~l~~l~~ 842 (924)
||..+|..+.++|++... + |.+ .......+|.++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 999999999999997743 3 322 223345689888 66777654
No 87
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.63 E-value=0.00016 Score=78.10 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=71.6
Q ss_pred HHHHHCCCeEEEE---cCCCHHHHHHHHHHcCCc----eEEeccChh-hHHHHHHHHhh----CC-CEEEEEcCCcCCHH
Q 002427 740 EGLLKMGVRPVMV---TGDNWRTAHAVAREIGIQ----DVMADVMPA-GKADAVRSFQK----DG-SIVAMVGDGINDSP 806 (924)
Q Consensus 740 ~~L~~~gi~v~ml---TGD~~~ta~~iA~~~gi~----~v~a~~~P~-~K~~~V~~lq~----~g-~~v~~vGDg~nD~~ 806 (924)
+.+++.++...++ +...........+..++. ..+-.+.|. .|...++.+.+ .. ..|+++||+.||.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~ 221 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLP 221 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHH
Confidence 4455556654444 333344444545566664 223344443 78888877764 34 78999999999999
Q ss_pred HHhcCCceEEecCChHHHH----Hhc-CEEE--ecCChhHHHHHHH
Q 002427 807 ALAAADVGMAIGAGTDIAI----EAA-DYVL--MRNSLEDVIIAID 845 (924)
Q Consensus 807 al~~A~vgia~~~~~~~a~----~~a-d~vl--~~~~l~~l~~~i~ 845 (924)
|++.|++|++|+++.+..+ ..| +.+. ..++=..+.+.++
T Consensus 222 m~~~ag~~vam~NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~ 267 (273)
T PRK00192 222 MLEAADIAVVVPGPDGPNPPLLPGIADGEFILASAPGPEGWAEAIN 267 (273)
T ss_pred HHHhCCeeEEeCCCCCCCcccCccccCCceEEecCCCcHHHHHHHH
Confidence 9999999999999998888 666 5666 3444556666554
No 88
>PRK06769 hypothetical protein; Validated
Probab=97.59 E-value=0.00022 Score=71.12 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=76.5
Q ss_pred CCeEEEEEECCeEEEEEEecC----CCcHhHHHHHHHHHHCCCeEEEEcCCCHH--------HHHHHHHHcCCceEEec-
Q 002427 709 ARTGILVAYDDNLIGVMGIAD----PVKREAAVVVEGLLKMGVRPVMVTGDNWR--------TAHAVAREIGIQDVMAD- 775 (924)
Q Consensus 709 g~~~i~va~~~~~lG~i~l~D----~lr~~~~~~I~~L~~~gi~v~mlTGD~~~--------ta~~iA~~~gi~~v~a~- 775 (924)
|++++.+-+|+++.|-..+.+ ++.|++++++++|++.|+++.++|+.... .....-+..|+..++..
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 678899999999877644333 36899999999999999999999986531 23344567888876632
Q ss_pred ---------cChhhH--HHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCceE
Q 002427 776 ---------VMPAGK--ADAVRSFQKDGSIVAMVGDGINDSPALAAADVGM 815 (924)
Q Consensus 776 ---------~~P~~K--~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vgi 815 (924)
..|.-. ..+++.+...-+.+.||||..+|..+-++|++-.
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~ 133 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATT 133 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeE
Confidence 122211 3334444333456999999999999999999763
No 89
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.50 E-value=0.00039 Score=72.59 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc---------ChhhHHHHHHHHhhCC---CEEE
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV---------MPAGKADAVRSFQKDG---SIVA 796 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~---------~P~~K~~~V~~lq~~g---~~v~ 796 (924)
-++.|++.++++.|++.|+++.++|+........+.+++|+.++|... .|.-. -+.+.+++.| ..++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~-~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPE-VYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHH-HHHHHHHHcCCCHHHeE
Confidence 468899999999999999999999999999999999999997644322 23222 3333344433 4689
Q ss_pred EEcCCcCCHHHHhcCCceEEe-cC---ChHHHHHhcCEEEecCChhHHHH
Q 002427 797 MVGDGINDSPALAAADVGMAI-GA---GTDIAIEAADYVLMRNSLEDVII 842 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vgia~-~~---~~~~a~~~ad~vl~~~~l~~l~~ 842 (924)
||||..||..+.+.|++.... .. ..+.-...+|.++ .++..+..
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~~ 217 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELTA 217 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHhh
Confidence 999999999999999987443 22 2222234578877 55766543
No 90
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.34 E-value=0.002 Score=68.26 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=83.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEec-------------cCh----hhHHHHHHH
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMAD-------------VMP----AGKADAVRS 787 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~----~v~a~-------------~~P----~~K~~~V~~ 787 (924)
-++||++.+.++.|++.|+++.++||=....+..+.+++|+. .++|+ -.| ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 458999999999999999999999999999999999999984 33221 112 346554432
Q ss_pred -----Hh--hCCCEEEEEcCCcCCHHHHhcC---CceEEec--CC-----hHHHHHhcCEEEecCChhHHHHHH
Q 002427 788 -----FQ--KDGSIVAMVGDGINDSPALAAA---DVGMAIG--AG-----TDIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 788 -----lq--~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
+. .....|.++|||.||..|..-. .--+.+| +. -+.-+++-||||.+|.--.++..|
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 11 2235699999999999996544 2234444 32 234667899999998766666654
No 91
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.34 E-value=0.00096 Score=69.94 Aligned_cols=113 Identities=19% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----e-cc----Chh--hHHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----A-DV----MPA--GKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a-~~----~P~--~K~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+.+...+..+-+..|+.+.| + .. .|. -=..+++.+.-....+.||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 57899999999999999999999999999888888999986532 2 11 121 1234444444445679999
Q ss_pred cCCcCCHHHHhcCCce-EE--ecCC--h-HHHHHhcCEEEecCChhHHHHHH
Q 002427 799 GDGINDSPALAAADVG-MA--IGAG--T-DIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 799 GDg~nD~~al~~A~vg-ia--~~~~--~-~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
||+.||..+-+.|++. |+ .|.. . ......+|+++ +++..|....
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~ 224 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPA 224 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHh
Confidence 9999999999999976 33 3321 1 22345689988 6677665544
No 92
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.26 E-value=0.0017 Score=51.78 Aligned_cols=65 Identities=35% Similarity=0.546 Sum_probs=55.6
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccc
Q 002427 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (924)
Q Consensus 46 ~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (924)
++..+.+.|++|..|...+++.+...+++....+++......+.+++.......+...+...||.
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 66 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE 66 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 45679999999999999999999999999999999999999999876655667776667777775
No 93
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.26 E-value=0.0012 Score=70.46 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-----ec-----cChhhHHHHHHHHhhCC----CEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-----AD-----VMPAGKADAVRSFQKDG----SIV 795 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~-----a~-----~~P~~K~~~V~~lq~~g----~~v 795 (924)
++.|++.++++.|++.|+++.++|+.....+..+-+++|+...| +. -.|. ...+.+.+++.| ..+
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~-p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPA-PWMALKNAIELGVYDVAAC 177 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCC-HHHHHHHHHHcCCCCchhe
Confidence 46799999999999999999999999999999998888876543 11 1232 223444444443 358
Q ss_pred EEEcCCcCCHHHHhcCCce
Q 002427 796 AMVGDGINDSPALAAADVG 814 (924)
Q Consensus 796 ~~vGDg~nD~~al~~A~vg 814 (924)
+||||..+|..+-+.|++-
T Consensus 178 l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred EEECCcHHHHHHHHHCCCe
Confidence 9999999999999999965
No 94
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.23 E-value=0.0023 Score=60.90 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=87.0
Q ss_pred HHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhH
Q 002427 702 VVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGK 781 (924)
Q Consensus 702 ~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K 781 (924)
.+.+.++|.+.+.+--|++++..= ....-|++++-++++|.+|+++.++|--++..+..+++.+|++-++-...|--+
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd--~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWD--NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred HHHHHHcCCcEEEEeccCceeccc--CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHH
Confidence 356788999999999999987754 345678999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHHhh---CCCEEEEEcCCc-CCHHHHhcCC
Q 002427 782 ADAVRSFQK---DGSIVAMVGDGI-NDSPALAAAD 812 (924)
Q Consensus 782 ~~~V~~lq~---~g~~v~~vGDg~-nD~~al~~A~ 812 (924)
. +-+.+++ .-+.|+||||.+ .|+-+-..++
T Consensus 98 ~-fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G 131 (175)
T COG2179 98 A-FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAG 131 (175)
T ss_pred H-HHHHHHHcCCChhHEEEEcchhhhhhhcccccC
Confidence 3 4444544 456799999984 4665444443
No 95
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.19 E-value=0.0022 Score=68.96 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-----EEec-cChhhH---HHHHHHHhhCC----CEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-----VMAD-VMPAGK---ADAVRSFQKDG----SIVA 796 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-----v~a~-~~P~~K---~~~V~~lq~~g----~~v~ 796 (924)
++-|++.++++.|++.|+++.++||.....+..+-+..|+.. +++. -.+..| .-+.+.+++.| ..++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 567999999999999999999999999988887777666533 2222 111112 23344444433 4599
Q ss_pred EEcCCcCCHHHHhcCCc---eEEecCC-------------------------hHHHHHhcCEEEecCChhHHHHHHH
Q 002427 797 MVGDGINDSPALAAADV---GMAIGAG-------------------------TDIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~v---gia~~~~-------------------------~~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
||||..+|..+-+.|++ |+..|.. .+.....+|+++ +++..+...+.
T Consensus 181 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi--~~~~~l~~~l~ 255 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVI--DTIADLPAVIA 255 (267)
T ss_pred EEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeeh--hhHHHHHHHHH
Confidence 99999999999999996 4444422 122334588888 77888877663
No 96
>PLN02382 probable sucrose-phosphatase
Probab=97.13 E-value=0.0027 Score=72.25 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhC----C---CEEEEEcCCcCCHHHHhcCC-ceEEecCChHHHHHhc--------CEEEec-CChhHHHH
Q 002427 780 GKADAVRSFQKD----G---SIVAMVGDGINDSPALAAAD-VGMAIGAGTDIAIEAA--------DYVLMR-NSLEDVII 842 (924)
Q Consensus 780 ~K~~~V~~lq~~----g---~~v~~vGDg~nD~~al~~A~-vgia~~~~~~~a~~~a--------d~vl~~-~~l~~l~~ 842 (924)
.|...++.|.+. | ..++.+||+.||.+||+.++ .||+|+++.+..++.+ +++..+ .+-..+.+
T Consensus 175 sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~ 254 (413)
T PLN02382 175 GKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATERCAAGIIQ 254 (413)
T ss_pred CHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCCCccHHHH
Confidence 477777777554 2 36899999999999999999 6999999998888643 555442 33444555
Q ss_pred HH
Q 002427 843 AI 844 (924)
Q Consensus 843 ~i 844 (924)
++
T Consensus 255 al 256 (413)
T PLN02382 255 AI 256 (413)
T ss_pred HH
Confidence 44
No 97
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.12 E-value=0.0045 Score=65.50 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=46.8
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
+.++.-.|++++- -.+..-+.++++|++|++.||.+++.||-.......+.+++|+.
T Consensus 2 KLIftDLDGTLLd---~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLD---LEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3455666777664 24456778999999999999999999999999999999998874
No 98
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.09 E-value=0.0029 Score=65.20 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=71.3
Q ss_pred CCcHhHHHHHH-HHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEe--------------ccChhhHHHHHHHHh-h
Q 002427 730 PVKREAAVVVE-GLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA--------------DVMPAGKADAVRSFQ-K 790 (924)
Q Consensus 730 ~lr~~~~~~I~-~L~~~gi~v~mlTGD~~~ta~~iA~~~gi---~~v~a--------------~~~P~~K~~~V~~lq-~ 790 (924)
.++|++.++|+ .++++|++++++|+=....+..+|+..++ +++.| .+.-++|..-++..- .
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 47999999996 78989999999999999999999988544 43322 244578988776542 2
Q ss_pred CCCEEEEEcCCcCCHHHHhcCCceEEecC
Q 002427 791 DGSIVAMVGDGINDSPALAAADVGMAIGA 819 (924)
Q Consensus 791 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 819 (924)
.....-+=||..||.|+|+.||-+++++.
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 23345688999999999999999999964
No 99
>PRK11590 hypothetical protein; Provisional
Probab=97.09 E-value=0.0038 Score=64.52 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=73.1
Q ss_pred CCcHhHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEe--------------ccChhhHHHHHHHH-hh
Q 002427 730 PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREIGI---QDVMA--------------DVMPAGKADAVRSF-QK 790 (924)
Q Consensus 730 ~lr~~~~~~I-~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi---~~v~a--------------~~~P~~K~~~V~~l-q~ 790 (924)
.+.|++.+.| +.|++.|++++++|+-....+..+++.+|+ +++.| .+.-++|..-++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 578889999999999999999999999994 43322 25568898877754 32
Q ss_pred CCCEEEEEcCCcCCHHHHhcCCceEEecCC
Q 002427 791 DGSIVAMVGDGINDSPALAAADVGMAIGAG 820 (924)
Q Consensus 791 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 820 (924)
.....-+=||..||.|+|+.|+-+++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 334456889999999999999999999743
No 100
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.06 E-value=0.0025 Score=66.35 Aligned_cols=113 Identities=23% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eE----Eec-----cChhhHHHHHHHHhhC----CC
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--DV----MAD-----VMPAGKADAVRSFQKD----GS 793 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--~v----~a~-----~~P~~K~~~V~~lq~~----g~ 793 (924)
.++.||+.+.++.|++.|+++.++|+-.......+.+.+|+. +. ++. -.|... .+.+.+++. ..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~-~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPD-LILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHH-HHHHHHHHcCCCChh
Confidence 478999999999999999999999999999999999999986 42 222 123221 222333332 25
Q ss_pred EEEEEcCCcCCHHHHhcCCceEE--ecCC--h--HHHHHhcCEEEecCChhHHHHHH
Q 002427 794 IVAMVGDGINDSPALAAADVGMA--IGAG--T--DIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~vgia--~~~~--~--~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
.++||||+.+|..+-++|++..+ +..| . ......+|.++ +++..+..++
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~~ 219 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPALL 219 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHhh
Confidence 69999999999999999999863 3222 2 22234578777 6677766543
No 101
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.04 E-value=0.0025 Score=74.17 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=84.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc------ChhhHHHHHHH-Hhh-CCCEEEEEcCC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV------MPAGKADAVRS-FQK-DGSIVAMVGDG 801 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~------~P~~K~~~V~~-lq~-~g~~v~~vGDg 801 (924)
++.|++.++++.||+.|+++.++|+-....+..+-+.+|+.++|... .+..|.+.+.. +++ ....+.||||.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 67899999999999999999999999999999999999997543221 11122223322 222 23569999999
Q ss_pred cCCHHHHhcCCce-EEec--CChHHHHHhcCEEEecCChhHHHHHHHHHH
Q 002427 802 INDSPALAAADVG-MAIG--AGTDIAIEAADYVLMRNSLEDVIIAIDLSR 848 (924)
Q Consensus 802 ~nD~~al~~A~vg-ia~~--~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r 848 (924)
.+|..+-+.|++- |.+. ...+.....+|+++ +++..+..++...+
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~~ 457 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTVQ 457 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHHh
Confidence 9999999999974 4443 22222234689988 67888877765443
No 102
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.03 E-value=0.0038 Score=62.08 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=79.3
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCceEEeccChhhHHH
Q 002427 705 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREIGIQDVMADVMPAGKAD 783 (924)
Q Consensus 705 ~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~-~~ta~~iA~~~gi~~v~a~~~P~~K~~ 783 (924)
+.+.+.+.+.+..|+++.-. =...+-|++.++++.|++.|+++.++|+-+ ...+..+.+.+|+...+....|... .
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~-~ 96 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGC-A 96 (170)
T ss_pred HHHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChH-H
Confidence 34567888888888765522 133678999999999999999999999987 6778888899998655444455433 2
Q ss_pred HHHHHhh---CCCEEEEEcCCc-CCHHHHhcCCce
Q 002427 784 AVRSFQK---DGSIVAMVGDGI-NDSPALAAADVG 814 (924)
Q Consensus 784 ~V~~lq~---~g~~v~~vGDg~-nD~~al~~A~vg 814 (924)
+-..+++ ....++||||.. .|..+-+.+++-
T Consensus 97 ~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 97 FRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 2233333 345699999998 699999999875
No 103
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.02 E-value=0.0022 Score=66.86 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHHHHcCC--c----eEEeccCh--hhHHHHHHHHhhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGD----NWRTAHAVAREIGI--Q----DVMADVMP--AGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD----~~~ta~~iA~~~gi--~----~v~a~~~P--~~K~~~V~~lq~~g~~v~~ 797 (924)
.+.+++++.++.|++.|+++.++||- ...++..+.+..|+ . .+++.-++ .+|... +++.| .++|
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~---l~~~~-i~I~ 189 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQW---LKKKN-IRIF 189 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHH---HHhcC-CeEE
Confidence 47788999999999999999999994 46799999999999 4 23443332 446554 44445 4899
Q ss_pred EcCCcCCHHHHhcCCce
Q 002427 798 VGDGINDSPALAAADVG 814 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg 814 (924)
+||..+|..+-+.|++-
T Consensus 190 IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 190 YGDSDNDITAAREAGAR 206 (237)
T ss_pred EcCCHHHHHHHHHcCCc
Confidence 99999999999999865
No 104
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.01 E-value=0.0046 Score=76.18 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=100.3
Q ss_pred hhHHHHHHHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCc----
Q 002427 698 VESFVVELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREIGIQ---- 770 (924)
Q Consensus 698 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l--~D~lr~~~~~~I~~L~~-~gi~v~mlTGD~~~ta~~iA~~~gi~---- 770 (924)
.+.....+....++.+++-+||+++..-.- ...+.+++.+++++|.+ .|+.++++||.............++.
T Consensus 480 ~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liae 559 (726)
T PRK14501 480 AEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAE 559 (726)
T ss_pred HHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEe
Confidence 445566677777889999999998864211 12367899999999999 59999999999999888877655542
Q ss_pred -------------------------------------------------eEE----------------------------
Q 002427 771 -------------------------------------------------DVM---------------------------- 773 (924)
Q Consensus 771 -------------------------------------------------~v~---------------------------- 773 (924)
.++
T Consensus 560 nG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~ 639 (726)
T PRK14501 560 HGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAP 639 (726)
T ss_pred CCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000
Q ss_pred ---------eccCh--hhHHHHHHHHhhC--CCEEEEEcCCcCCHHHHhcC---CceEEecCChHHHHHhcCEEEecCCh
Q 002427 774 ---------ADVMP--AGKADAVRSFQKD--GSIVAMVGDGINDSPALAAA---DVGMAIGAGTDIAIEAADYVLMRNSL 837 (924)
Q Consensus 774 ---------a~~~P--~~K~~~V~~lq~~--g~~v~~vGDg~nD~~al~~A---~vgia~~~~~~~a~~~ad~vl~~~~l 837 (924)
-++.| -+|...++.+.+. ...++++||+.||.+|++.+ ..+|+||++ ..+|++.|. +-
T Consensus 640 ~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~--~~ 713 (726)
T PRK14501 640 LEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLP--SQ 713 (726)
T ss_pred eEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCC--CH
Confidence 11222 2465555555542 24799999999999999986 588888874 357888884 34
Q ss_pred hHHHHHHH
Q 002427 838 EDVIIAID 845 (924)
Q Consensus 838 ~~l~~~i~ 845 (924)
..+..+++
T Consensus 714 ~eV~~~L~ 721 (726)
T PRK14501 714 REVRELLR 721 (726)
T ss_pred HHHHHHHH
Confidence 55555443
No 105
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.97 E-value=0.0017 Score=66.25 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=64.1
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe----------ccChhhHHHHHHHHhhCCCEEEE
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA----------DVMPAGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a----------~~~P~~K~~~V~~lq~~g~~v~~ 797 (924)
.+++.++++++++.|++.|+++.++||-....+..+-+.+|+..+|. .-.|+--...++.+.-....+.|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 34566777999999999999999999999999999999999975331 12233334455555444567999
Q ss_pred EcCCcCCHHHHhcC
Q 002427 798 VGDGINDSPALAAA 811 (924)
Q Consensus 798 vGDg~nD~~al~~A 811 (924)
|||+.+|..+-++|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999886654
No 106
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.97 E-value=0.0027 Score=50.54 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=53.4
Q ss_pred eeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 130 GQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 130 ~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
..+.+.|++|.+|.+.+++.+...+++..+.+++..+.+.+.|++.......+...+...|
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 64 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAG 64 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcC
Confidence 4688999999999999999999999999999999999999999877666777766666666
No 107
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.96 E-value=0.0057 Score=63.76 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=42.2
Q ss_pred EEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002427 715 VAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 715 va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi 769 (924)
+-.|++++- .+..-++++++|++|++.|++++++||-....+..+.+++|+
T Consensus 4 ~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 4 TDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 344555553 355667899999999999999999999999999999999997
No 108
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.96 E-value=0.004 Score=73.22 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=46.4
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002427 710 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi 769 (924)
.+.++.-.|++++.- .+..-+.++++|++|+++|+.+++.||........+++++|+
T Consensus 416 ~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 416 KKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 456777788887642 223445789999999999999999999999999999999886
No 109
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.94 E-value=0.0058 Score=57.85 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=71.7
Q ss_pred EEEEEECCeEEEEEEe-----cCCCcHhHHHHHHHHHHCCCeEEEEcCCC--------HHHHHHHHHHcCCceEEe---c
Q 002427 712 GILVAYDDNLIGVMGI-----ADPVKREAAVVVEGLLKMGVRPVMVTGDN--------WRTAHAVAREIGIQDVMA---D 775 (924)
Q Consensus 712 ~i~va~~~~~lG~i~l-----~D~lr~~~~~~I~~L~~~gi~v~mlTGD~--------~~ta~~iA~~~gi~~v~a---~ 775 (924)
.+.+-.|+++..-... +-++.|++.++++.|++.|+++.++|+.. ......+.+.+|+...+. .
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4566677777742111 23678999999999999999999999988 777888899999863222 1
Q ss_pred --cChhhH--HHHHHHHh-hCCCEEEEEcC-CcCCHHHHhcCCce
Q 002427 776 --VMPAGK--ADAVRSFQ-KDGSIVAMVGD-GINDSPALAAADVG 814 (924)
Q Consensus 776 --~~P~~K--~~~V~~lq-~~g~~v~~vGD-g~nD~~al~~A~vg 814 (924)
..|.-. ..+.+.++ -....++|||| ..+|..+-+.+++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 233111 23333432 33467999999 59999998888764
No 110
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.93 E-value=0.0044 Score=66.11 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=77.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----ec-----cChh--hHHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----AD-----VMPA--GKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a~-----~~P~--~K~~~V~~lq~~g~~v~~v 798 (924)
++.|+++++++.|++.|+++.++|+.....+..+-+.+|+.+.| +. -.|. -=...++.+.-....++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 56899999999999999999999999999999999999986422 11 1222 1123333333334569999
Q ss_pred cCCcCCHHHHhcCCce-EEe-cCChHHHHHhcCEEEecCChhHHH
Q 002427 799 GDGINDSPALAAADVG-MAI-GAGTDIAIEAADYVLMRNSLEDVI 841 (924)
Q Consensus 799 GDg~nD~~al~~A~vg-ia~-~~~~~~a~~~ad~vl~~~~l~~l~ 841 (924)
||..+|..|-+.|++- |++ |.........+|.++ ++++.+.
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi--~~~~el~ 231 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVV--RRLDDLS 231 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEe--CCHHHHH
Confidence 9999999999999985 333 322222334578887 5566554
No 111
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0052 Score=69.65 Aligned_cols=147 Identities=18% Similarity=0.376 Sum_probs=119.1
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----------------------------
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----------------------------- 770 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~----------------------------- 770 (924)
.|.|++.+..+.+++....|+.|-++-||.+-.+-.++...+-.|+++||.
T Consensus 816 If~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a~ 895 (1354)
T KOG4383|consen 816 IFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFAA 895 (1354)
T ss_pred hhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhhc
Confidence 589999999999999999999999999999999999999999999999995
Q ss_pred --------------------------------------------------------------------------eEEecc
Q 002427 771 --------------------------------------------------------------------------DVMADV 776 (924)
Q Consensus 771 --------------------------------------------------------------------------~v~a~~ 776 (924)
..|..+
T Consensus 896 qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTDc 975 (1354)
T KOG4383|consen 896 QKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTDC 975 (1354)
T ss_pred cCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccCC
Confidence 178999
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHH--HHhcCCceEEecC-------------ChHHHH-Hhc------------
Q 002427 777 MPAGKADAVRSFQKDGSIVAMVGDGINDSP--ALAAADVGMAIGA-------------GTDIAI-EAA------------ 828 (924)
Q Consensus 777 ~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~--al~~A~vgia~~~-------------~~~~a~-~~a------------ 828 (924)
+|+.-.+.|+-+|+.|+.++.+|--.|-.. .+-+||++|++-. ++.... ++.
T Consensus 976 npeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgqL 1055 (1354)
T KOG4383|consen 976 NPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQL 1055 (1354)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeecccc
Confidence 999999999999999999999999887543 3468999999841 222211 122
Q ss_pred -----CEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002427 829 -----DYVLMRNSLEDVIIAIDLSRKTFARIRLNYIFAMAYNV 866 (924)
Q Consensus 829 -----d~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~~l~~n~ 866 (924)
|+-+-...+-++..+|.-+|..+.-+|+.+.|.+...+
T Consensus 1056 naL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL 1098 (1354)
T KOG4383|consen 1056 NALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQL 1098 (1354)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 23333334566778899999999999999988765444
No 112
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.91 E-value=0.0045 Score=65.74 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=77.1
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-----cc----Chh--hHHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-----DV----MPA--GKADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a-----~~----~P~--~K~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+-....+..+-+.+|+.+.|. .- .|. -=....+.+.-....+.||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 578999999999999999999999999999999999999875332 21 222 1123334443334569999
Q ss_pred cCCcCCHHHHhcCCce-EEe--cCC-hHHHHHhcCEEEecCChhH
Q 002427 799 GDGINDSPALAAADVG-MAI--GAG-TDIAIEAADYVLMRNSLED 839 (924)
Q Consensus 799 GDg~nD~~al~~A~vg-ia~--~~~-~~~a~~~ad~vl~~~~l~~ 839 (924)
||..+|..+-++|++- |++ |.. .+.....+|.++ +++..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi--~~~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLI--KDYED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEe--ccchh
Confidence 9999999999999975 223 322 222234688888 55555
No 113
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.86 E-value=0.0027 Score=66.20 Aligned_cols=81 Identities=22% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHHHHcCCceEE----eccC-h---hhHHHHHHHHhhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGD----NWRTAHAVAREIGIQDVM----ADVM-P---AGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD----~~~ta~~iA~~~gi~~v~----a~~~-P---~~K~~~V~~lq~~g~~v~~ 797 (924)
.+.+.+++.++.|++.|+++.++|+- ...++..+.+.+|+.+.| +.-. + .+|. ..+++.| .+.|
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~-i~i~ 189 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKN-IRIH 189 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCC-CeEE
Confidence 35566999999999999999999996 777999999999997533 2111 0 1343 3455555 4799
Q ss_pred EcCCcCCHHHHhcCCce
Q 002427 798 VGDGINDSPALAAADVG 814 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg 814 (924)
+||..||..+-+.|++-
T Consensus 190 vGDs~~DI~aAk~AGi~ 206 (237)
T TIGR01672 190 YGDSDNDITAAKEAGAR 206 (237)
T ss_pred EeCCHHHHHHHHHCCCC
Confidence 99999999999888854
No 114
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.81 E-value=0.0074 Score=67.10 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=79.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----ec-----cChhh--HHHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----AD-----VMPAG--KADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a~-----~~P~~--K~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+-....+..+-+.+||.+.| +. -.|+. =...++.+.-....++||
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 47899999999999999999999999999999999999997532 21 12322 133444444345679999
Q ss_pred cCCcCCHHHHhcCCce-EEecCChHH-HHHhcCEEEecCChhHHH
Q 002427 799 GDGINDSPALAAADVG-MAIGAGTDI-AIEAADYVLMRNSLEDVI 841 (924)
Q Consensus 799 GDg~nD~~al~~A~vg-ia~~~~~~~-a~~~ad~vl~~~~l~~l~ 841 (924)
||..+|+.|-+.|++- |++..+... -...+|+++ +++..+.
T Consensus 296 GDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL~ 338 (381)
T PLN02575 296 GNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDELS 338 (381)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHHH
Confidence 9999999999999976 333333222 223588887 6677663
No 115
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.74 E-value=0.0073 Score=62.00 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=43.1
Q ss_pred EEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002427 713 ILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 713 i~va~~~~~lG~i~l~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi 769 (924)
+++-.|++++. .+ ++.+++.+++++|++.|++++++||-....+..+.++++.
T Consensus 2 i~~D~DgTL~~----~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 2 LFFDLDGTLLD----PNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred EEEeCcCCCcC----CCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 34556777764 22 5789999999999999999999999999999999887553
No 116
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.73 E-value=0.0048 Score=64.18 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe---------ccChhhHHHHHHHHhhC---CCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA---------DVMPAGKADAVRSFQKD---GSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a---------~~~P~~K~~~V~~lq~~---g~~v~~ 797 (924)
++.|++.++++.|++.|+++.++|+-+...+...-+.+|+.+.|- ...|... .+...+++. ...+.|
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~-~~~~~~~~~~~~~~~~~~ 172 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPK-IFYAALKRLGVKPEEAVM 172 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHH-HHHHHHHHcCCChhhEEE
Confidence 578999999999999999999999988888888889999875331 1234322 233333333 356999
Q ss_pred EcCCc-CCHHHHhcCCce-EEec
Q 002427 798 VGDGI-NDSPALAAADVG-MAIG 818 (924)
Q Consensus 798 vGDg~-nD~~al~~A~vg-ia~~ 818 (924)
|||.. +|..+-++|++- |.+.
T Consensus 173 igDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 173 VGDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred ECCChHHHHHHHHHCCCEEEEEC
Confidence 99998 999999999875 4444
No 117
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.69 E-value=0.011 Score=59.45 Aligned_cols=113 Identities=25% Similarity=0.240 Sum_probs=71.0
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCC--ceEEec----------cCh--hhH
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGI--QDVMAD----------VMP--AGK 781 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~---------------~ta~~iA~~~gi--~~v~a~----------~~P--~~K 781 (924)
+.|++.+++++|++.|+++.++|..+. .....+-+..|+ +.++.. ..| +--
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~~ 109 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGML 109 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHHH
Confidence 578999999999999999999998762 112223345565 344321 122 222
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHHHhcCCce-EEecCCh--H-HHHHhc--CEEEecCChhHHHHHHH
Q 002427 782 ADAVRSFQKDGSIVAMVGDGINDSPALAAADVG-MAIGAGT--D-IAIEAA--DYVLMRNSLEDVIIAID 845 (924)
Q Consensus 782 ~~~V~~lq~~g~~v~~vGDg~nD~~al~~A~vg-ia~~~~~--~-~a~~~a--d~vl~~~~l~~l~~~i~ 845 (924)
....+.+.-....+.||||..+|..+-+.|++. |.+..|. . .....+ |.++ +++..+...+.
T Consensus 110 ~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 110 LSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 334444433446799999999999999999975 2232222 1 122235 7777 66777766543
No 118
>PRK11587 putative phosphatase; Provisional
Probab=96.65 E-value=0.0088 Score=62.15 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=73.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---eEEe-c----cChhhHHHHHHHHhh---CCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---DVMA-D----VMPAGKADAVRSFQK---DGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~---~v~a-~----~~P~~K~~~V~~lq~---~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+.....+...-+..|+. .+.+ + ..|.- ..+...+++ ....+.||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p-~~~~~~~~~~g~~p~~~l~i 161 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEP-DAYLLGAQLLGLAPQECVVV 161 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCc-HHHHHHHHHcCCCcccEEEE
Confidence 57899999999999999999999998877777666777774 2222 1 12321 222333333 34679999
Q ss_pred cCCcCCHHHHhcCCce-EEecCCh-HHHHHhcCEEEecCChhHH
Q 002427 799 GDGINDSPALAAADVG-MAIGAGT-DIAIEAADYVLMRNSLEDV 840 (924)
Q Consensus 799 GDg~nD~~al~~A~vg-ia~~~~~-~~a~~~ad~vl~~~~l~~l 840 (924)
||..+|..+-+.|++. |++..+. ......+|.++ +++..+
T Consensus 162 gDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~--~~~~el 203 (218)
T PRK11587 162 EDAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVL--HSLEQL 203 (218)
T ss_pred ecchhhhHHHHHCCCEEEEECCCCchhhhccCCEEe--cchhhe
Confidence 9999999999999985 5554332 22334578877 445544
No 119
>PTZ00174 phosphomannomutase; Provisional
Probab=96.64 E-value=0.013 Score=62.19 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 002427 710 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 765 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~ 765 (924)
.+.+++-.||+++. =..++.+..+++|+++++.|+++++.||.+........+
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 56677777887762 133588999999999999999999999998887665544
No 120
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.59 E-value=0.0054 Score=62.64 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----e-----ccChhhH--HHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----A-----DVMPAGK--ADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a-----~~~P~~K--~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|+-+......+.+.+|+.+.| + ...|.-. ..+.+.+.-....++||
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 57899999999999999999999998888889999999986432 2 1233322 23333333334569999
Q ss_pred cCCcCCHHHHhcCCce
Q 002427 799 GDGINDSPALAAADVG 814 (924)
Q Consensus 799 GDg~nD~~al~~A~vg 814 (924)
||+.+|..+-+.+++-
T Consensus 172 gD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFK 187 (198)
T ss_pred eCCHHHHHHHHHCCCc
Confidence 9999999998888875
No 121
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0053 Score=59.70 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=53.0
Q ss_pred eeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 128 IVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 128 ~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
...+|.|. |+|.+|+..+++.|+.++||.++++++..+.+.|.- ...+.+|.+.+++.|
T Consensus 7 ~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tG 65 (247)
T KOG4656|consen 7 YEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTG 65 (247)
T ss_pred eeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhC
Confidence 45677775 899999999999999999999999999999999984 467899999999998
No 122
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.55 E-value=0.013 Score=58.21 Aligned_cols=116 Identities=23% Similarity=0.344 Sum_probs=91.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc---------------------------------------
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ--------------------------------------- 770 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~--------------------------------------- 770 (924)
.+-|++.++++.|++. ...+++|---.+-+.++|..+|+.
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 3679999999998864 556677777788899999999984
Q ss_pred -----eEEeccChhhHHHHHHHHhhCC------------------CEEEEEcCCcCCHHHHhcCC-ce-EEec-CChHHH
Q 002427 771 -----DVMADVMPAGKADAVRSFQKDG------------------SIVAMVGDGINDSPALAAAD-VG-MAIG-AGTDIA 824 (924)
Q Consensus 771 -----~v~a~~~P~~K~~~V~~lq~~g------------------~~v~~vGDg~nD~~al~~A~-vg-ia~~-~~~~~a 824 (924)
++|.|+.|.+-.+++...+.-| ...++|||.+.|..+|+.+. -| +|+. ||.+-|
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 2788888876666666555422 34689999999999998775 33 6665 788999
Q ss_pred HHhcCEEEecCChhHHHHHHHH
Q 002427 825 IEAADYVLMRNSLEDVIIAIDL 846 (924)
Q Consensus 825 ~~~ad~vl~~~~l~~l~~~i~~ 846 (924)
..-||+.+..++...+..+|++
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 9999999999999998888876
No 123
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.55 E-value=0.0054 Score=64.01 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEe-ccChhhH--HHHHHH-HhhC---CCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMA-DVMPAGK--ADAVRS-FQKD---GSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a-~~~P~~K--~~~V~~-lq~~---g~~v~~v 798 (924)
++.|++.++++.|++.|+++.++|.-+...+...-+..|+.+ +++ .-....| .++... +++. ...++||
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 578999999999999999999999988888888888889853 222 1111122 223332 2332 4569999
Q ss_pred cCCcCCHHHHhcCCce--EEecC
Q 002427 799 GDGINDSPALAAADVG--MAIGA 819 (924)
Q Consensus 799 GDg~nD~~al~~A~vg--ia~~~ 819 (924)
||..+|..+-+.|++. +++.+
T Consensus 173 gDs~~di~aA~~aG~~~~~~v~~ 195 (224)
T PRK14988 173 DDSEPILDAAAQFGIRYCLGVTN 195 (224)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeC
Confidence 9999999999999996 44443
No 124
>PLN02957 copper, zinc superoxide dismutase
Probab=96.52 E-value=0.0093 Score=62.50 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhhhc
Q 002427 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILA 115 (924)
Q Consensus 46 ~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 115 (924)
+++.+.+ +|+|.+|+.++++.+.+.+||.++.+++..+++.+.++ ...+++.+.+++.||.+.+..
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~ 71 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIG 71 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEec
Confidence 4566888 79999999999999999999999999999999999873 467888899999999876544
No 125
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.44 E-value=0.006 Score=63.57 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEec-----cChhhH--HHHHHHH-hhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMAD-----VMPAGK--ADAVRSF-QKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a~-----~~P~~K--~~~V~~l-q~~g~~v~~ 797 (924)
++.|++.+++++|++. +++.++|+-....+..+-+++|+.. +++. ..|... ...++.+ .-....+.|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5789999999999999 9999999988899899999999864 3332 124322 2233333 222346999
Q ss_pred EcCCc-CCHHHHhcCCce-EEe--cCChHHHHHhcCEEEecCChhHHHHH
Q 002427 798 VGDGI-NDSPALAAADVG-MAI--GAGTDIAIEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 798 vGDg~-nD~~al~~A~vg-ia~--~~~~~~a~~~ad~vl~~~~l~~l~~~ 843 (924)
|||.. +|..+-+.+++. |.+ +..+......+|.++ +++..|..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 899999999974 333 222222223567776 667766644
No 126
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.01 Score=57.15 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC----CceE------------------Ee--ccChhhHHHHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIG----IQDV------------------MA--DVMPAGKADAV 785 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~g----i~~v------------------~a--~~~P~~K~~~V 785 (924)
.++|+-++.++.+++.+++++++|+--..-...+-++++ |..+ +- ..--.+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 478999999999999999999998877777777777666 3210 00 11124899999
Q ss_pred HHHhhCCCEEEEEcCCcCCHHHHhcCCceEE
Q 002427 786 RSFQKDGSIVAMVGDGINDSPALAAADVGMA 816 (924)
Q Consensus 786 ~~lq~~g~~v~~vGDg~nD~~al~~A~vgia 816 (924)
+.+++....+.|+|||+.|.+|-+.+|+=.|
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFA 183 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFA 183 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhh
Confidence 9999999999999999999988776665443
No 127
>PLN02957 copper, zinc superoxide dismutase
Probab=96.39 E-value=0.0086 Score=62.75 Aligned_cols=65 Identities=18% Similarity=0.438 Sum_probs=56.5
Q ss_pred eeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeecc
Q 002427 128 IVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVM 199 (924)
Q Consensus 128 ~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~ 199 (924)
+...+.+ +|+|.+|+..+++.+.+++||.++.+++..+++.|.|+ ...+++.+.+++.| |.+.+.
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~G---y~a~~~ 70 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTG---RKARLI 70 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcC---CcEEEe
Confidence 4456778 69999999999999999999999999999999999984 46788999999999 766544
No 128
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.37 E-value=0.0093 Score=65.33 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=70.7
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EE----e--------------ccChhhHHHHHHH
Q 002427 727 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VM----A--------------DVMPAGKADAVRS 787 (924)
Q Consensus 727 l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-v~----a--------------~~~P~~K~~~V~~ 787 (924)
..+++.+++.++++.|++.|++++++||-....+..+.+.+|+.. .| + +-.|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 578899999999999999999999999999999999999988874 21 1 2223455555555
Q ss_pred Hhh-CCCEEEEEcCCcCCHHHHhcCCce
Q 002427 788 FQK-DGSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 788 lq~-~g~~v~~vGDg~nD~~al~~A~vg 814 (924)
+-. ....++||||..+|+.+-+.|++.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 433 236799999999999999999977
No 129
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.34 E-value=0.012 Score=63.69 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc------eEE-ec----cChhhH--HHHHHHHhhCCCEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ------DVM-AD----VMPAGK--ADAVRSFQKDGSIVA 796 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~------~v~-a~----~~P~~K--~~~V~~lq~~g~~v~ 796 (924)
++.|++.+.++.|++.|+++.++|+-+......+-+..+.. .++ +. ..|+-. ..+.+.+.-....++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 57899999999999999999999998888777666554321 222 11 122211 223333333345699
Q ss_pred EEcCCcCCHHHHhcCCceEEe---cCChHHHHHhcCEEEecCChhHHH
Q 002427 797 MVGDGINDSPALAAADVGMAI---GAGTDIAIEAADYVLMRNSLEDVI 841 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vgia~---~~~~~~a~~~ad~vl~~~~l~~l~ 841 (924)
||||+.+|..|-+.|++.... |.........+|+++ +++..+.
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi--~~~~~l~ 269 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVF--DCLGDVP 269 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEE--CChhhcc
Confidence 999999999999999977433 222222224688888 5555544
No 130
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.015 Score=56.68 Aligned_cols=66 Identities=30% Similarity=0.516 Sum_probs=55.9
Q ss_pred CeeEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhh
Q 002427 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (924)
Q Consensus 44 ~~~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (924)
...+.+|.| .|+|.+|+..+.+.|+..+|+.++++++..+.+.|... ..++++.+.++.+|-++..
T Consensus 5 ~~~~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts---~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 5 DTYEAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETS---VPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred CceeEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEcc---CChHHHHHHHHhhChheEE
Confidence 345567777 68999999999999999999999999999999988743 5678999999999977643
No 131
>PLN02580 trehalose-phosphatase
Probab=96.26 E-value=0.043 Score=61.06 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHHHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHH
Q 002427 703 VELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAV 763 (924)
Q Consensus 703 ~~~~~~g~~~i~va~~~~~lG~i~l~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~i 763 (924)
..+.......+++-|||++.-+..--| .+-++.++++++|.+. ..+.++||.......+.
T Consensus 112 ~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~ 173 (384)
T PLN02580 112 ANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYEL 173 (384)
T ss_pred HHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHH
Confidence 345555677889999999887552211 2356889999999887 47999999876554443
No 132
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.01 Score=49.72 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=48.0
Q ss_pred CCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 136 GMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 136 gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
.|||..|...+++.++.++||.++.++...+++++.-+ .++..+++.+.+.+
T Consensus 12 ~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 12 NMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred CcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999966 67899999888865
No 133
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.14 E-value=0.0075 Score=75.58 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=53.8
Q ss_pred eeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeecc
Q 002427 129 VGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVM 199 (924)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~ 199 (924)
..++.|+||+|++|+.+|++.+++++||.++.+++. +.+++++ .+.+++.+.+++.| |++...
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~G---y~~~~~ 66 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAG---YDASVS 66 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcC---Cccccc
Confidence 468999999999999999999999999999999994 4455543 46889999999999 877653
No 134
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.12 E-value=0.011 Score=57.08 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCCc---eEEec---------cChhhHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGIQ---DVMAD---------VMPAGKA 782 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~---------------~ta~~iA~~~gi~---~v~a~---------~~P~~K~ 782 (924)
++.|++.++++.|++.|+++.++|..+. .....+.+.+|+. .+++. ..|+ .
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~--~ 104 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPK--P 104 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCC--H
Confidence 3689999999999999999999998652 4556677889986 23321 1232 3
Q ss_pred HHHHHH-hhC---CCEEEEEcCCcCCHHHHhcCCce
Q 002427 783 DAVRSF-QKD---GSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 783 ~~V~~l-q~~---g~~v~~vGDg~nD~~al~~A~vg 814 (924)
++++.. ++. ...+.||||...|..+-+.+++-
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 333332 222 35699999999999998888765
No 135
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.11 E-value=0.021 Score=56.58 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=66.5
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcCCc---------e----EEeccChh-hH--HHHHHHHhh
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIGIQ---------D----VMADVMPA-GK--ADAVRSFQK 790 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD-~~~ta~~iA~~~gi~---------~----v~a~~~P~-~K--~~~V~~lq~ 790 (924)
+-++.|++.++++.|+++|+++.++|+- ....+..+-+.+|+. + +.+.-.|. .| .++.+.+.+
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 3357899999999999999999999965 888999998999986 3 22222222 22 233454443
Q ss_pred C------CCEEEEEcCCcCCHHHHhcCCceEEe
Q 002427 791 D------GSIVAMVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 791 ~------g~~v~~vGDg~nD~~al~~A~vgia~ 817 (924)
. ...++||||...|+.+-++|++-...
T Consensus 123 ~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 123 VDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred cccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 2 25699999999999999998876544
No 136
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.01 E-value=0.0091 Score=60.10 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec---------cChhhHHHHHHHHhhC---CCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------VMPAGKADAVRSFQKD---GSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~---------~~P~~K~~~V~~lq~~---g~~v~~ 797 (924)
++.|++.++++.|+++|+++.++|+... +..+.+.+|+.+.|-. -.|. ..-+-..+++. ...+.|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~-p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPD-PEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCC-hHHHHHHHHHcCCCHHHeEE
Confidence 5789999999999999999999997432 4567888898643222 2232 11222233333 345999
Q ss_pred EcCCcCCHHHHhcCCce
Q 002427 798 VGDGINDSPALAAADVG 814 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg 814 (924)
|||..+|..+-+.|++-
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMF 180 (185)
T ss_pred EecCHHHHHHHHHcCCE
Confidence 99999999999999875
No 137
>PLN02940 riboflavin kinase
Probab=96.01 E-value=0.016 Score=65.43 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=73.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH-HcCCce----EEe-----ccChhhH--HHHHHHHhhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR-EIGIQD----VMA-----DVMPAGK--ADAVRSFQKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~-~~gi~~----v~a-----~~~P~~K--~~~V~~lq~~g~~v~~ 797 (924)
++.|++.++++.|++.|+++.++|+-....+...-+ ..|+.+ +.+ +..|.-. ...++.+.-....+.|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 467999999999999999999999998888876665 678753 222 1233222 2333333333567999
Q ss_pred EcCCcCCHHHHhcCCce-EEecCC--hHHHHHhcCEEEecCChhH
Q 002427 798 VGDGINDSPALAAADVG-MAIGAG--TDIAIEAADYVLMRNSLED 839 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg-ia~~~~--~~~a~~~ad~vl~~~~l~~ 839 (924)
|||..+|..+-+.|++. |.+..+ .......+|.++ +++..
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i--~sl~e 215 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI--NSLLD 215 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe--CCHhH
Confidence 99999999999999977 334332 233334577776 44554
No 138
>PRK09449 dUMP phosphatase; Provisional
Probab=95.95 E-value=0.023 Score=59.30 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EE-ecc----ChhhHHHHHHHHhhCC----CEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VM-ADV----MPAGKADAVRSFQKDG----SIVA 796 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~-a~~----~P~~K~~~V~~lq~~g----~~v~ 796 (924)
++.|++.++++.|+ .|+++.++|......+...-+.+|+.+ ++ +.- .|.. .-+-..+++.| ..+.
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p-~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDV-AIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCH-HHHHHHHHHcCCCCcccEE
Confidence 47899999999999 589999999988888888888899863 22 221 3322 22223333333 4699
Q ss_pred EEcCCc-CCHHHHhcCCce-EEec-CChH-HHHHhcCEEEecCChhHHHHHH
Q 002427 797 MVGDGI-NDSPALAAADVG-MAIG-AGTD-IAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 797 ~vGDg~-nD~~al~~A~vg-ia~~-~~~~-~a~~~ad~vl~~~~l~~l~~~i 844 (924)
||||.. +|..+-+.|++- |.+. .+.. .....+|+++ +++..+..++
T Consensus 173 ~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 173 MVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 999998 699999999985 4443 2211 1112478877 6677776654
No 139
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=95.87 E-value=0.023 Score=56.91 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEe-ccChhhH------HHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMA-DVMPAGK------ADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a-~~~P~~K------~~~V~~lq~~g~~v~~v 798 (924)
++.|++.+.++.|++.|+++.++|+-.... ..+.+++|+.+ +++ .-....| ..+.+.+.-....+.||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 578999999999999999999999977777 66666689853 332 1111222 23333333335679999
Q ss_pred cCCcCCHHHHhcCCce
Q 002427 799 GDGINDSPALAAADVG 814 (924)
Q Consensus 799 GDg~nD~~al~~A~vg 814 (924)
||...|..+-+++++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999988888763
No 140
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=95.85 E-value=0.034 Score=55.58 Aligned_cols=108 Identities=26% Similarity=0.219 Sum_probs=66.8
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCC--ceEEe-c---------------cC
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREIGI--QDVMA-D---------------VM 777 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~---------------~ta~~iA~~~gi--~~v~a-~---------------~~ 777 (924)
+.|++.+++++|+++|+++.++|.-+. .....+-.+.|+ +.++. . ..
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K 106 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRK 106 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCCC
Confidence 468999999999999999999997553 111233344443 33332 1 12
Q ss_pred hhhHHHHHHHHhhC---CCEEEEEcCCcCCHHHHhcCCceE--EecCCh---HHHHHhcCEEEecCChhHHH
Q 002427 778 PAGKADAVRSFQKD---GSIVAMVGDGINDSPALAAADVGM--AIGAGT---DIAIEAADYVLMRNSLEDVI 841 (924)
Q Consensus 778 P~~K~~~V~~lq~~---g~~v~~vGDg~nD~~al~~A~vgi--a~~~~~---~~a~~~ad~vl~~~~l~~l~ 841 (924)
|.- .-+...+++. ...+.||||..+|..+-++|++.. .+..|. ......+|.++ +++..|+
T Consensus 107 P~p-~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i--~~~~el~ 175 (176)
T TIGR00213 107 PKP-GMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVL--NSLADLP 175 (176)
T ss_pred CCH-HHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEe--ccHHHhh
Confidence 321 1222333333 456899999999999999999853 433332 11223489888 5666554
No 141
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.85 E-value=0.013 Score=58.97 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEe-----ccChhhHHHHHHHHhhC---CCEEE
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMA-----DVMPAGKADAVRSFQKD---GSIVA 796 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a-----~~~P~~K~~~V~~lq~~---g~~v~ 796 (924)
-++.|++.++++.|++.|+++.++|+- ..+..+-+.+|+.+ +++ ...|... .+-+.+++. ...+.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~-~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPE-TFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChH-HHHHHHHHcCCCHHHeE
Confidence 468999999999999999999999986 56777888899864 322 1223322 122223332 35689
Q ss_pred EEcCCcCCHHHHhcCCce
Q 002427 797 MVGDGINDSPALAAADVG 814 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vg 814 (924)
||||..+|..+-+.|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMF 181 (185)
T ss_pred EEeCcHhhHHHHHHCCCe
Confidence 999999999999988875
No 142
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=95.81 E-value=0.039 Score=58.36 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhcC--------CceEEecCChHHHHHhcCEEEecCChhHHHHHH
Q 002427 778 PAGKADAVRSFQKD----GSIVAMVGDGINDSPALAAA--------DVGMAIGAGTDIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 778 P~~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A--------~vgia~~~~~~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
+.+|...++.+.++ ...++|+||+.||.+|++.+ ..+|+++.+. .+..|++++ ++...+...+
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~--~~~~A~~~~--~~~~~v~~~L 239 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS--KKTVAKFHL--TGPQQVLEFL 239 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC--cCCCceEeC--CCHHHHHHHH
Confidence 34677666666543 34699999999999999988 4788885332 345689888 5666666555
No 143
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.029 Score=46.88 Aligned_cols=53 Identities=25% Similarity=0.474 Sum_probs=47.7
Q ss_pred CCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcc
Q 002427 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (924)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (924)
-.|+|.+|..++++.++.++||.++..+...+++++.-. .++..+.+.+.+.|
T Consensus 11 v~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 11 VNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred ECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 389999999999999999999999999999999998744 67889999888766
No 144
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=95.63 E-value=0.014 Score=57.81 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=66.6
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEec-----cChhhH--HHHHHHHhhCCCEEE
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMAD-----VMPAGK--ADAVRSFQKDGSIVA 796 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a~-----~~P~~K--~~~V~~lq~~g~~v~ 796 (924)
..++.|++.+.++.|++.|++++++|+-.......+.+++|+.. +++. ..|+.. ..+++.+.-....+.
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 34578999999999999999999999999999999999999873 3322 122222 234444433456799
Q ss_pred EEcCCcCCHHHHhcCCce
Q 002427 797 MVGDGINDSPALAAADVG 814 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vg 814 (924)
||||..+|..+-+.|++.
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999999999888865
No 145
>PLN02811 hydrolase
Probab=95.49 E-value=0.051 Score=56.51 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCce----EEecc-------ChhhH--HHHHHHHh---hC
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH-AVAREIGIQD----VMADV-------MPAGK--ADAVRSFQ---KD 791 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~-~iA~~~gi~~----v~a~~-------~P~~K--~~~V~~lq---~~ 791 (924)
-++.|++.++|+.|++.|+++.++||-...... ...+..++.+ +++.- .|+-. ...++.+. -.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 357899999999999999999999997765333 2333334432 22222 12211 22333332 22
Q ss_pred CCEEEEEcCCcCCHHHHhcCCce
Q 002427 792 GSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 792 g~~v~~vGDg~nD~~al~~A~vg 814 (924)
...+.||||...|+.|-+.|++.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCe
Confidence 35699999999999999999976
No 146
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.38 E-value=0.046 Score=60.37 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=80.8
Q ss_pred eEEEEEECCeEEEEEEecC--------CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceEEec--c
Q 002427 711 TGILVAYDDNLIGVMGIAD--------PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE----IGIQDVMAD--V 776 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D--------~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~----~gi~~v~a~--~ 776 (924)
+++.+--|+++-|-+.-+| ++.+++.++++.|++.|+++.++|.-+...|..+-++ +|+.+.|.. .
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 4555555666666555555 4578999999999999999999999999999999999 888754332 3
Q ss_pred ChhhHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceEEe
Q 002427 777 MPAGKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 777 ~P~~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgia~ 817 (924)
.+.-|.+.++.+-++ -..++||||...|..+.+.+...+.+
T Consensus 84 ~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~ 128 (320)
T TIGR01686 84 NWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTL 128 (320)
T ss_pred ecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCcc
Confidence 345566555554332 35799999999999999998877644
No 147
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.38 E-value=0.12 Score=54.70 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=66.7
Q ss_pred CeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH--HHHHHcCCce-EEec-cChhhH-HHH
Q 002427 710 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH--AVAREIGIQD-VMAD-VMPAGK-ADA 784 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~--~iA~~~gi~~-v~a~-~~P~~K-~~~ 784 (924)
++.+.+-.|++ +.-.+.+-|++++++++|+++|+++.++|.-...... ...+++|+.. .+-. +++.+- ...
T Consensus 8 ~~~~~~D~dG~----l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~ 83 (242)
T TIGR01459 8 YDVFLLDLWGV----IIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQM 83 (242)
T ss_pred CCEEEEecccc----cccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHH
Confidence 44555555554 3446778999999999999999999999985554444 5668899875 3333 333321 123
Q ss_pred HHH-Hhh---CCCEEEEEcCCcCCHHHHhcCC
Q 002427 785 VRS-FQK---DGSIVAMVGDGINDSPALAAAD 812 (924)
Q Consensus 785 V~~-lq~---~g~~v~~vGDg~nD~~al~~A~ 812 (924)
+.. +++ .+..+.++||+.+|...+...+
T Consensus 84 l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 84 ILESKKRFDIRNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred HHhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence 332 232 2467999999999998886543
No 148
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.37 E-value=0.17 Score=49.48 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=64.6
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHH-----cCCc--eEEe--------------ccChhh-HH
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH---AVARE-----IGIQ--DVMA--------------DVMPAG-KA 782 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~---~iA~~-----~gi~--~v~a--------------~~~P~~-K~ 782 (924)
+|.+.|+++++++++++.|++++.+||-....+. ...++ .++. .++. .-.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 4788999999999999999999999999888774 45555 2342 2211 233444 88
Q ss_pred HHHHHHhh-----CCCEEEEEcCCcCCHHHHhcCCce
Q 002427 783 DAVRSFQK-----DGSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 783 ~~V~~lq~-----~g~~v~~vGDg~nD~~al~~A~vg 814 (924)
+.++.+++ ....++..|++.+|+.+-++++|.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 88888877 345677899999999998877654
No 149
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.36 E-value=0.057 Score=50.82 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcC-------CceEE-----eccChhhHHHHHHHHhhCC----
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREIG-------IQDVM-----ADVMPAGKADAVRSFQKDG---- 792 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD-~~~ta~~iA~~~g-------i~~v~-----a~~~P~~K~~~V~~lq~~g---- 792 (924)
++.+++.++++.|++.|+++.++|+- ....+..+-+..| +.++| ++-.|.-+ .+.+.+++.|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~-~~~~a~~~lg~~~~ 107 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSP-RLVEIALKLNGVLK 107 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHH-HHHHHHHHhcCCCC
Confidence 58999999999999999999999998 7878878778777 44322 22334333 2333333334
Q ss_pred -CEEEEEcCCcCCHHHHhc
Q 002427 793 -SIVAMVGDGINDSPALAA 810 (924)
Q Consensus 793 -~~v~~vGDg~nD~~al~~ 810 (924)
..++|+||...|..+++.
T Consensus 108 p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 108 PKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred cceEEEECCCHhHHHHHHh
Confidence 679999999988776653
No 150
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.24 E-value=0.15 Score=63.42 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHH
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVARE 766 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L-~~~gi~v~mlTGD~~~ta~~iA~~ 766 (924)
+.....+.....+.+++-+||+++-.-...-.+.++..+++++| ++.|+.++++||....+....-..
T Consensus 585 ~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 585 EHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 44556677777889999999999844333345678999999998 677999999999999988877654
No 151
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.20 E-value=0.079 Score=56.24 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=61.4
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHcCCc-----eEEeccChhhHHHHHHHHhhCCCEEEEEc
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNW---RTAHAVAREIGIQ-----DVMADVMPAGKADAVRSFQKDGSIVAMVG 799 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~---~ta~~iA~~~gi~-----~v~a~~~P~~K~~~V~~lq~~g~~v~~vG 799 (924)
..++-|++.+.++.|++.|+++.++|+-.. ..+...-+..|+. .++.+-....|....+.+.+....++++|
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vG 195 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFG 195 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEEC
Confidence 345779999999999999999999999653 3344556778885 45655444567777777766667799999
Q ss_pred CCcCCHHHH
Q 002427 800 DGINDSPAL 808 (924)
Q Consensus 800 Dg~nD~~al 808 (924)
|-.+|....
T Consensus 196 D~~~Df~~~ 204 (266)
T TIGR01533 196 DNLLDFDDF 204 (266)
T ss_pred CCHHHhhhh
Confidence 999998654
No 152
>PLN03017 trehalose-phosphatase
Probab=95.17 E-value=0.26 Score=54.41 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=46.1
Q ss_pred HHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 002427 706 EESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 706 ~~~g~~~i~va~~~~~lG~i~l~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA 764 (924)
.......+++-+||+++-+..-.| .+-++..++|++|+ .|+.++++||........+.
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 344456778889999997766434 47899999999999 68999999999988877664
No 153
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.09 E-value=0.057 Score=56.12 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=39.8
Q ss_pred HHHHHcCCc----eEEeccChh--hHHHHHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceEEe
Q 002427 762 AVAREIGIQ----DVMADVMPA--GKADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 762 ~iA~~~gi~----~v~a~~~P~--~K~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgia~ 817 (924)
...++.|+. ..+.++.|. .|...++.+.+. ...|+++||+.||.+||+.|+.|+|+
T Consensus 155 ~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 155 ALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 333444654 233444443 587777776543 35699999999999999999999986
No 154
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=94.96 E-value=0.13 Score=50.81 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=66.8
Q ss_pred CeEEEEEECCeEEEEEE----e--cCC---CcHhHHHHHHHHHHCCCeEEEEcCCCH------------HHHHHHHHHcC
Q 002427 710 RTGILVAYDDNLIGVMG----I--ADP---VKREAAVVVEGLLKMGVRPVMVTGDNW------------RTAHAVAREIG 768 (924)
Q Consensus 710 ~~~i~va~~~~~lG~i~----l--~D~---lr~~~~~~I~~L~~~gi~v~mlTGD~~------------~ta~~iA~~~g 768 (924)
.+.+++-.|++++-... . .++ +-|++.+++++|++.|+++.++|.-.. .....+.+.+|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC
Confidence 35677788888775321 1 122 348999999999999999999996443 24567788888
Q ss_pred Cce--EE-ec----cChhhHHHHHHH-HhhCC-----CEEEEEcCCc--------CCHHHHhcCCce
Q 002427 769 IQD--VM-AD----VMPAGKADAVRS-FQKDG-----SIVAMVGDGI--------NDSPALAAADVG 814 (924)
Q Consensus 769 i~~--v~-a~----~~P~~K~~~V~~-lq~~g-----~~v~~vGDg~--------nD~~al~~A~vg 814 (924)
+.. +. +. -.|. .+.++. +++.| ..+.||||.. +|..+-++|++-
T Consensus 93 l~~~~ii~~~~~~~~KP~--p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 93 VPIQVLAATHAGLYRKPM--TGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred CCEEEEEecCCCCCCCCc--cHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 863 11 11 1222 222222 22223 5699999986 699888877664
No 155
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.93 E-value=0.12 Score=50.52 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=76.9
Q ss_pred HHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCC--eEEEEcCC-------CHHHHHHHHHHcCCceE-Ee
Q 002427 705 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV--RPVMVTGD-------NWRTAHAVAREIGIQDV-MA 774 (924)
Q Consensus 705 ~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi--~v~mlTGD-------~~~ta~~iA~~~gi~~v-~a 774 (924)
+.+.|.+.+.+-.|+++.. -=++++-|+..+.+++|++.+. ++.++|-- +...|..+++.+||.-+ +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 4566777777777776432 2378889999999999999976 49999875 47899999999999754 45
Q ss_pred ccChhhHHHHHHHHhhC-----CCEEEEEcCCc-CCHH
Q 002427 775 DVMPAGKADAVRSFQKD-----GSIVAMVGDGI-NDSP 806 (924)
Q Consensus 775 ~~~P~~K~~~V~~lq~~-----g~~v~~vGDg~-nD~~ 806 (924)
...|.-..++.+.++.+ .+.++||||-. .|.-
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl 151 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVL 151 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHH
Confidence 67897777888888765 56799999973 3443
No 156
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=94.87 E-value=0.057 Score=55.27 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----e-c----cChhhHHHHHHHHhh---CCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM----A-D----VMPAGKADAVRSFQK---DGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~----a-~----~~P~~K~~~V~~lq~---~g~~v~~ 797 (924)
.+-|++.++++.|++.|+++.++|+-.. ....+.+.+|+...| . . ..|+- .-+-+.+++ ....++|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~-~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS-RLRGLLEALGLLEYFDFVVTSYEVGAEKPDP-KIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHCCcHHhcceEEeecccCCCCCCH-HHHHHHHHHcCCChhHEEE
Confidence 5779999999999999999999997554 456777888985322 2 1 12322 122223333 3457999
Q ss_pred EcCCc-CCHHHHhcCCce
Q 002427 798 VGDGI-NDSPALAAADVG 814 (924)
Q Consensus 798 vGDg~-nD~~al~~A~vg 814 (924)
|||.. +|..+-++|++-
T Consensus 183 IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWR 200 (203)
T ss_pred ECCCchHHHHHHHHcCCe
Confidence 99997 899988887653
No 157
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=94.77 E-value=0.066 Score=52.05 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=56.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEec----cChhhHHHHHHH-HhhCCC--EEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMAD----VMPAGKADAVRS-FQKDGS--IVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a~----~~P~~K~~~V~~-lq~~g~--~v~~v 798 (924)
...+++.++++.|++.|+++.++|+-....+....+.. +.. +++. ..| +.+.... +++.|. .++||
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp--~~~~~~~~~~~~~~~~~~l~i 140 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKP--EPEIFLAALESLGLPPEVLHV 140 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCc--CHHHHHHHHHHcCCCCCEEEE
Confidence 44579999999999999999999999888888887775 433 2221 123 2233322 222222 69999
Q ss_pred cCCcCCHHHHhcCC
Q 002427 799 GDGINDSPALAAAD 812 (924)
Q Consensus 799 GDg~nD~~al~~A~ 812 (924)
||..+|..+-+.|+
T Consensus 141 GDs~~Di~aa~~aG 154 (154)
T TIGR01549 141 GDNLNDIEGARNAG 154 (154)
T ss_pred eCCHHHHHHHHHcc
Confidence 99999998877653
No 158
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=94.61 E-value=0.081 Score=58.54 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHcCCc--eEEec------c--ChhhHHH
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVMAD------V--MPAGKAD 783 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD---------------~~~ta~~iA~~~gi~--~v~a~------~--~P~~K~~ 783 (924)
-++.|++.+++++|++.|+++.++|.- .......+.+..|+. .++.. - ...-|..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHH
Confidence 357899999999999999999999982 234566777888875 23221 1 0112333
Q ss_pred HHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceE
Q 002427 784 AVRSFQKD----GSIVAMVGDGINDSPALAAADVGM 815 (924)
Q Consensus 784 ~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgi 815 (924)
.+..+.++ ...+.||||+.+|..+-+.|++-.
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~ 144 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKG 144 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeE
Confidence 44443332 367999999999999999999873
No 159
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.60 E-value=0.1 Score=54.22 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCcHhHHHHHHHH--HHCCCeEEEEcCCCHHHHHHHHHHcCCceE----E----------------------eccCh-hh
Q 002427 730 PVKREAAVVVEGL--LKMGVRPVMVTGDNWRTAHAVAREIGIQDV----M----------------------ADVMP-AG 780 (924)
Q Consensus 730 ~lr~~~~~~I~~L--~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v----~----------------------a~~~P-~~ 780 (924)
|+.|+.++.++.+ ++.|+.+.++|-=|..--..+-+.-|+... | .++.| -=
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 5778999999999 457999999999899888899999998631 1 12323 36
Q ss_pred HHHHHHHHhhC----C---CEEEEEcCCcCCHH
Q 002427 781 KADAVRSFQKD----G---SIVAMVGDGINDSP 806 (924)
Q Consensus 781 K~~~V~~lq~~----g---~~v~~vGDg~nD~~ 806 (924)
|..+++.+++. | .+|.+||||.||.-
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~C 183 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFC 183 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcC
Confidence 99999988865 4 68999999999963
No 160
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=94.48 E-value=0.036 Score=53.62 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=63.9
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-E----Eec-cChhhHHHHHHHHhh---CCCEEEEEc
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-V----MAD-VMPAGKADAVRSFQK---DGSIVAMVG 799 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-v----~a~-~~P~~K~~~V~~lq~---~g~~v~~vG 799 (924)
-++||++.+.++.|+ .++++.+.|.=+...+..+-+.+|+.. + +++ -....|-.+.+.+++ ....+.|||
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~ 122 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIID 122 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEE
Confidence 357999999999999 579999999999999999999998853 2 221 112223224444444 345799999
Q ss_pred CCcCCHHHHhcCCceEEe
Q 002427 800 DGINDSPALAAADVGMAI 817 (924)
Q Consensus 800 Dg~nD~~al~~A~vgia~ 817 (924)
|..+|..+-+++.+-|..
T Consensus 123 Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 123 DSPDSWPFHPENLIPIKP 140 (148)
T ss_pred CCHHHhhcCccCEEEecC
Confidence 999999887666555443
No 161
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=94.46 E-value=0.078 Score=52.02 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHcCCc--eEE-e-----ccChh--hHHHH
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGD---------------NWRTAHAVAREIGIQ--DVM-A-----DVMPA--GKADA 784 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD---------------~~~ta~~iA~~~gi~--~v~-a-----~~~P~--~K~~~ 784 (924)
++-|++.+++++|++.|+++.++|-- .......+.+++|+. .++ + ..... -|...
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 35689999999999999999999974 244667778888886 232 2 11111 12233
Q ss_pred HHHH-hhCC---CEEEEEcCCcCCHHHHhcCCceEE
Q 002427 785 VRSF-QKDG---SIVAMVGDGINDSPALAAADVGMA 816 (924)
Q Consensus 785 V~~l-q~~g---~~v~~vGDg~nD~~al~~A~vgia 816 (924)
+..+ ++.| ..+.||||+.+|..+-+.+++...
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 3333 2222 459999999999999999988743
No 162
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.11 E-value=0.22 Score=51.52 Aligned_cols=91 Identities=10% Similarity=0.149 Sum_probs=64.1
Q ss_pred ecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---CCc----eEEe---ccChhhH--HHHHHHHhhCCCE
Q 002427 727 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI---GIQ----DVMA---DVMPAGK--ADAVRSFQKDGSI 794 (924)
Q Consensus 727 l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~---gi~----~v~a---~~~P~~K--~~~V~~lq~~g~~ 794 (924)
++-++.||+.+++++|+++|+++.++|..+......+-+.. ++. .+|. ...|+-. ..+.+.+.-....
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 34578999999999999999999999998877777666654 332 2222 1223222 2334444333456
Q ss_pred EEEEcCCcCCHHHHhcCCceEEe
Q 002427 795 VAMVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vgia~ 817 (924)
++||||...|+.|-++|++-...
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti~ 194 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTGQ 194 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEE
Confidence 99999999999999999986443
No 163
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.08 E-value=0.23 Score=52.63 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhhC-C---CEEEEEcCCcCCHHHHhcCCceEEecCChHH
Q 002427 779 AGKADAVRSFQKD-G---SIVAMVGDGINDSPALAAADVGMAIGAGTDI 823 (924)
Q Consensus 779 ~~K~~~V~~lq~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~ 823 (924)
..|...|+.|+++ | ..|..+||..||.+||..++-||.++++...
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e 212 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPE 212 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HH
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHH
Confidence 4688888887765 2 3578899999999999999999999988776
No 164
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.74 E-value=0.37 Score=49.79 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=56.6
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCce---EEeccC-hhh------HHHHHHHHhhCCC-
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQD---VMADVM-PAG------KADAVRSFQKDGS- 793 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t---a~~iA~~~gi~~---v~a~~~-P~~------K~~~V~~lq~~g~- 793 (924)
.-|.-|++.+.++.|++.|++|+++||-.... ...--++.|+.. ++-|-. -.. |.+.-+.+.++|+
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYr 197 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYR 197 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCce
Confidence 34678999999999999999999999988654 323335567753 444431 112 6666667777765
Q ss_pred EEEEEcCCcCCH
Q 002427 794 IVAMVGDGINDS 805 (924)
Q Consensus 794 ~v~~vGDg~nD~ 805 (924)
+++.+||-.+|.
T Consensus 198 Iv~~iGDq~sDl 209 (229)
T TIGR01675 198 IWGNIGDQWSDL 209 (229)
T ss_pred EEEEECCChHHh
Confidence 678999999987
No 165
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.99 E-value=0.29 Score=62.65 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=77.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-e----EE-e----ccChhhH--HHHHHHHhhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ-D----VM-A----DVMPAGK--ADAVRSFQKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~-~----v~-a----~~~P~~K--~~~V~~lq~~g~~v~~ 797 (924)
.+-|++.+.+++|+++|+++.++|+-....+..+-+++|+. . ++ + +..|+.. ....+.+.-....+.|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 36799999999999999999999999888888888889984 2 21 1 2233222 2334444334567999
Q ss_pred EcCCcCCHHHHhcCCce-EEecCC---hHHHHHhcCEEEecCChhHH
Q 002427 798 VGDGINDSPALAAADVG-MAIGAG---TDIAIEAADYVLMRNSLEDV 840 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg-ia~~~~---~~~a~~~ad~vl~~~~l~~l 840 (924)
|||..+|+.|-+.|++- |.+..+ .+.....+|.++ +++..+
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi--~~l~el 285 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIR--KDIGNI 285 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEE--CChHHC
Confidence 99999999999999974 444322 334445678888 556654
No 166
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=92.76 E-value=0.12 Score=53.20 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=56.6
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCCc----eEEec-----cChhhH--HHHHHHHhhCCCEE
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRT--AHAVAREIGIQ----DVMAD-----VMPAGK--ADAVRSFQKDGSIV 795 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t--a~~iA~~~gi~----~v~a~-----~~P~~K--~~~V~~lq~~g~~v 795 (924)
-++.|++.++++.|++.|+++.++|...... ........++. .+++. ..|+-. ..+.+.+.-....+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 3578999999999999999999999865432 33223334543 33322 234322 22223333234568
Q ss_pred EEEcCCcCCHHHHhcCCce
Q 002427 796 AMVGDGINDSPALAAADVG 814 (924)
Q Consensus 796 ~~vGDg~nD~~al~~A~vg 814 (924)
+||||...|..+-++|++-
T Consensus 173 l~i~D~~~di~aA~~aG~~ 191 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGIT 191 (211)
T ss_pred EEEcCCHHHHHHHHHcCCE
Confidence 9999999999999999885
No 167
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.68 E-value=0.52 Score=47.17 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=40.7
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
.+|+.-.|+++++ =+.+ . ..+.+.+.+|+++|++|+.+|.-....-...-+.+|+.
T Consensus 8 ~lIFtDlD~TLl~-~~ye--~-~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 8 LLIFTDLDGTLLP-HSYE--W-QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred eEEEEcccCcccC-CCCC--C-CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 3555566777776 2222 2 23678999999999999999987777777777888874
No 168
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=91.70 E-value=1.2 Score=47.52 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=29.5
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCc
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRT---AHAVAREIGIQ 770 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~t---a~~iA~~~gi~ 770 (924)
+=|++.++|++|+++|++++++||.+..+ .....+++|++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 67789999999999999999999866654 33334456663
No 169
>PRK10444 UMP phosphatase; Provisional
Probab=91.64 E-value=1.1 Score=47.50 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=37.8
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---cCC
Q 002427 723 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE---IGI 769 (924)
Q Consensus 723 G~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~---~gi 769 (924)
|++.-.+.+-|++.++++.|++.|++++++|+....+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 44455677888999999999999999999999888877777766 466
No 170
>PLN02151 trehalose-phosphatase
Probab=91.59 E-value=1.6 Score=48.11 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=42.3
Q ss_pred cCCeEEEEEECCeEEEEEEecCC--CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 002427 708 SARTGILVAYDDNLIGVMGIADP--VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 708 ~g~~~i~va~~~~~lG~i~l~D~--lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA 764 (924)
.....+++-+||+++-+..--|. +-++.+++|+.|.+ +..+.++||-+......+.
T Consensus 96 ~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 96 GKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred CCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 34567888999998865543333 56889999999994 5799999998877666554
No 171
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.45 E-value=0.24 Score=44.37 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=52.7
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCc----eEEeccChhhHHHHHHHHhh--CCCE
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQ----DVMADVMPAGKADAVRSFQK--DGSI 794 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA---~~~gi~----~v~a~~~P~~K~~~V~~lq~--~g~~ 794 (924)
++...+.+=|++.++|+.|+++|++++++|-....+...++ +.+|+. +++... ....+.|++ .+.+
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~-----~~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG-----MAAAEYLKEHKGGKK 82 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH-----HHHHHHHHHHTTSSE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH-----HHHHHHHHhcCCCCE
Confidence 34457788899999999999999999999987755544444 667875 233222 123344444 5778
Q ss_pred EEEEcCCcCCHHHHhcCC
Q 002427 795 VAMVGDGINDSPALAAAD 812 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~ 812 (924)
|..+|.. .....++.++
T Consensus 83 v~vlG~~-~l~~~l~~~G 99 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAG 99 (101)
T ss_dssp EEEES-H-HHHHHHHHTT
T ss_pred EEEEcCH-HHHHHHHHcC
Confidence 9999875 4444444443
No 172
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.26 E-value=0.22 Score=51.71 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=61.1
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-----c-cChhhH--HHH-HHHHhhC---CCEEE
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-----D-VMPAGK--ADA-VRSFQKD---GSIVA 796 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a-----~-~~P~~K--~~~-V~~lq~~---g~~v~ 796 (924)
-++.|++.++++.| ++++.++|+.....+...-+..|+.+.|. . -....| .++ ...+++. ...++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 35678999999988 48999999998888888888889864432 1 111122 222 2233333 35699
Q ss_pred EEcCCcCCHHHHhcCCceEEe
Q 002427 797 MVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vgia~ 817 (924)
||||..+|..+-++|++....
T Consensus 164 ~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEE
Confidence 999999999999999988653
No 173
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=91.00 E-value=0.75 Score=46.88 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc----eEEec-----cChhhH--HHHHHHHhhCCCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ----DVMAD-----VMPAGK--ADAVRSFQKDGSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA-~~~gi~----~v~a~-----~~P~~K--~~~V~~lq~~g~~v~~ 797 (924)
++.|++.++++.|++.|+++.++|.-+.......- +..++. .+++. ..|.-. ..+.+.+.-....+.|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 47899999999999999999999987665544332 223442 23221 233221 2223333323456899
Q ss_pred EcCCcCCHHHHhcCCce
Q 002427 798 VGDGINDSPALAAADVG 814 (924)
Q Consensus 798 vGDg~nD~~al~~A~vg 814 (924)
|||...|..+-+++++.
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (199)
T PRK09456 164 FDDNADNIEAANALGIT 180 (199)
T ss_pred eCCCHHHHHHHHHcCCE
Confidence 99999999998988885
No 174
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=90.68 E-value=0.66 Score=46.55 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEec---------cChhhH--HHHHHHHhhCCCE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VMAD---------VMPAGK--ADAVRSFQKDGSI 794 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~a~---------~~P~~K--~~~V~~lq~~g~~ 794 (924)
++.+++.+++++|+ .++.++|.-+...+..+.+.+|+.. +++. ..|... ..+++.+......
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 47789999999998 4789999988889999999999953 3332 144322 2334444434567
Q ss_pred EEEEcCCcCCHHHHhcCCce
Q 002427 795 VAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vg 814 (924)
++||||...|..+-+.+++.
T Consensus 161 ~l~vgD~~~di~aA~~~G~~ 180 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMK 180 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCE
Confidence 89999999999988888765
No 175
>PHA02597 30.2 hypothetical protein; Provisional
Probab=90.68 E-value=0.45 Score=48.35 Aligned_cols=83 Identities=20% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--------E-EeccChhhHHHHHHH-HhhCC-CEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--------V-MADVMPAGKADAVRS-FQKDG-SIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~--------v-~a~~~P~~K~~~V~~-lq~~g-~~v~~v 798 (924)
++.|++.+++++|++.+ +.+++|.-+..+....-+.+|+.. + .++... -|.+++.. +++.| ..++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~-~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDE-SKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCc-ccHHHHHHHHHHhCCCcEEEe
Confidence 47899999999999875 566667644444444556666642 2 122222 14444443 33334 358899
Q ss_pred cCCcCCHHHHhcC--Cce
Q 002427 799 GDGINDSPALAAA--DVG 814 (924)
Q Consensus 799 GDg~nD~~al~~A--~vg 814 (924)
||..+|..+-++| ++-
T Consensus 152 gDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLP 169 (197)
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 9999999999999 886
No 176
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=89.63 E-value=0.69 Score=46.51 Aligned_cols=82 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec---------cChhhH--HHHHHHHhhCCCEEEEEc
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD---------VMPAGK--ADAVRSFQKDGSIVAMVG 799 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~---------~~P~~K--~~~V~~lq~~g~~v~~vG 799 (924)
+-|+ .++++.|++. ++..++|+.....+..+-+..|+.+.|.. -.|... ....+.+.-....+.|||
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ig 166 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFE 166 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 3454 6899999875 89999999999999999999998643221 122221 223333332334589999
Q ss_pred CCcCCHHHHhcCCce
Q 002427 800 DGINDSPALAAADVG 814 (924)
Q Consensus 800 Dg~nD~~al~~A~vg 814 (924)
|..+|+.+-+.|++-
T Consensus 167 Ds~~di~aA~~aG~~ 181 (188)
T PRK10725 167 DADFGIQAARAAGMD 181 (188)
T ss_pred ccHhhHHHHHHCCCE
Confidence 999999999998875
No 177
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=89.40 E-value=2.6 Score=44.67 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=40.6
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCc
Q 002427 712 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG---DNWRTAHAVAREIGIQ 770 (924)
Q Consensus 712 ~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTG---D~~~ta~~iA~~~gi~ 770 (924)
.+++-.||++. -.+.+=|++.++|++|++.|++++++|| ..........+++|+.
T Consensus 3 ~~~~D~DGtl~----~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 3 GYLIDLDGTMY----KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 44555565554 3566667899999999999999999996 5566666666777774
No 178
>PLN02645 phosphoglycolate phosphatase
Probab=89.34 E-value=0.62 Score=51.17 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=67.2
Q ss_pred CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCc----eEEeccChhhH
Q 002427 709 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQ----DVMADVMPAGK 781 (924)
Q Consensus 709 g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA---~~~gi~----~v~a~~~P~~K 781 (924)
.++.+.+-.||++. -.+.+=|++.++|++|++.|++++++|+....+...++ +++|+. +++....
T Consensus 27 ~~~~~~~D~DGtl~----~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~---- 98 (311)
T PLN02645 27 SVETFIFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF---- 98 (311)
T ss_pred hCCEEEEeCcCCeE----eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH----
Confidence 36677777777664 34666799999999999999999999999977776666 567874 2332221
Q ss_pred HHHHHHHhhC----CCEEEEEcCCcCCHHHHhcCCceEEe
Q 002427 782 ADAVRSFQKD----GSIVAMVGDGINDSPALAAADVGMAI 817 (924)
Q Consensus 782 ~~~V~~lq~~----g~~v~~vGDg~nD~~al~~A~vgia~ 817 (924)
.....+++. ++. .++++...|...++.+++-..-
T Consensus 99 -~~~~~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 99 -AAAAYLKSINFPKDKK-VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred -HHHHHHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEec
Confidence 112223321 344 4555566789999988775443
No 179
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=88.46 E-value=3.1 Score=35.54 Aligned_cols=64 Identities=38% Similarity=0.604 Sum_probs=47.7
Q ss_pred EEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccch
Q 002427 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (924)
Q Consensus 48 ~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (924)
..+.+.++.|..|...++..+...+++....++.......+.++....+.+.+.....+.||..
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 4567899999999999999999999988888888888776666543334455545556666653
No 180
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=87.31 E-value=0.85 Score=44.83 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=41.7
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCCe-------------------EEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISGE-------------------LEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~~-------------------~~V~yd~~~~~~~~i~~~I 186 (924)
+.|=|-+|+.+.+++||.++++-++.+. +.|.|||..++.++|++..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f 75 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELF 75 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHH
Confidence 4689999999999999999999777654 8999999999999999854
No 181
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=86.90 E-value=1.2 Score=46.85 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=64.1
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EE-ec----cChhhH--HHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD----VM-AD----VMPAGK--ADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~----v~-a~----~~P~~K--~~~V~~lq~~g~~v~~v 798 (924)
++-|++.++++.|++. +++.++|.-+.. .+..|+.+ ++ +. ..|.-. ....+.+.-....++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 4668999999999975 899889875544 26678753 22 21 123221 12222332234569999
Q ss_pred cCC-cCCHHHHhcCCceEEecC--ChHHH-----HHhcCEEEecCChhHHHHH
Q 002427 799 GDG-INDSPALAAADVGMAIGA--GTDIA-----IEAADYVLMRNSLEDVIIA 843 (924)
Q Consensus 799 GDg-~nD~~al~~A~vgia~~~--~~~~a-----~~~ad~vl~~~~l~~l~~~ 843 (924)
||. ..|..+-+.|++-....+ +.... ....|..+ .+|+.|..+
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i--~~l~el~~~ 237 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEI--SRLASLTSL 237 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEE--CCHHHHHhh
Confidence 999 599999999987754432 11111 12356665 556666554
No 182
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=86.33 E-value=1.7 Score=46.34 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=49.8
Q ss_pred eEEEEEECCeEEEEEEecCC--Cc-HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceE
Q 002427 711 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDV 772 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~--lr-~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v 772 (924)
.++++-.|++++.- +.+ +| |++.+++++|++.|+++.+.|+-....+...-+++|+...
T Consensus 127 kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~Y 188 (301)
T TIGR01684 127 HVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRY 188 (301)
T ss_pred eEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcc
Confidence 46778888887654 333 66 9999999999999999999998888888899999999853
No 183
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=86.25 E-value=2.6 Score=41.94 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=41.1
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCc
Q 002427 721 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REIGIQ 770 (924)
Q Consensus 721 ~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA---~~~gi~ 770 (924)
+-|.+..+|..-|++.|+++.||.++.+|..+|--..+.-+.+. +++|++
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 46999999999999999999999999999999876655555555 456774
No 184
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=85.82 E-value=2.7 Score=42.37 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=64.1
Q ss_pred CCcHhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCceEE--------------------------eccChh--h
Q 002427 730 PVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREIGIQDVM--------------------------ADVMPA--G 780 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi-~v~mlTGD~~~ta~~iA~~~gi~~v~--------------------------a~~~P~--~ 780 (924)
|+-|+..++|+.+++.|- .++++|--|.---..+-+..||...| |...|. =
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 677999999999999986 99999998988888999999986322 222333 2
Q ss_pred HHHHHHHHhhCC-------CEEEEEcCCcCCH-HHHhcCCceEEe
Q 002427 781 KADAVRSFQKDG-------SIVAMVGDGINDS-PALAAADVGMAI 817 (924)
Q Consensus 781 K~~~V~~lq~~g-------~~v~~vGDg~nD~-~al~~A~vgia~ 817 (924)
|..++..++..+ .++.++|||.||. |.++...--++|
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 666777666532 2789999999994 555544444444
No 185
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.28 E-value=1.8 Score=46.56 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=48.6
Q ss_pred eEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 711 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
+.+++-.||+++.- .+.+.++++++|++|++.|++++++||.....+..+.+++|+.
T Consensus 5 kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 5 LLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred eEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 45666678887742 3457788999999999999999999999999999999999986
No 186
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=84.83 E-value=1.3 Score=46.24 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCCc---eEEeccCh--------hhHHHHHHHHhhCCC-E
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWR---TAHAVAREIGIQ---DVMADVMP--------AGKADAVRSFQKDGS-I 794 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~---ta~~iA~~~gi~---~v~a~~~P--------~~K~~~V~~lq~~g~-~ 794 (924)
+.=|++.+.++.+++.|++|+.+||-+.. ....=-++.|+. .++-|-.. +-|...-+.++++|+ +
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 34477888999999999999999984332 223333556663 33333222 238888888888854 7
Q ss_pred EEEEcCCcCCHHH
Q 002427 795 VAMVGDGINDSPA 807 (924)
Q Consensus 795 v~~vGDg~nD~~a 807 (924)
++++||..+|...
T Consensus 195 i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 195 IANIGDQLSDFSG 207 (229)
T ss_dssp EEEEESSGGGCHC
T ss_pred EEEeCCCHHHhhc
Confidence 8999999999864
No 187
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=83.82 E-value=1.7 Score=41.93 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=40.6
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC--------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG--------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~--------------~~~V~yd~~~~~~~~i~~~I 186 (924)
+.|=|-+|..+.+++||.++++-++.+ .+.|.|||..++.++|++..
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f 68 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYL 68 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHH
Confidence 468999999999999999999866552 38999999999999999854
No 188
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=83.29 E-value=5.6 Score=46.42 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=63.0
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCceEEec-------------------cChhhHHHHHHHHhh
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE-IGIQDVMAD-------------------VMPAGKADAVRSFQK 790 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~-~gi~~v~a~-------------------~~P~~K~~~V~~lq~ 790 (924)
+++++.+.+ ++.|-+ +++|+-....++.+|++ +|++.+.+. +.=++|.+-++....
T Consensus 111 l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 677766544 566754 99999999999999987 899865221 233568887774432
Q ss_pred CCCEEEEEcCCcCCHHHHhcCCceEEecC
Q 002427 791 DGSIVAMVGDGINDSPALAAADVGMAIGA 819 (924)
Q Consensus 791 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 819 (924)
......+-||..||.|+|+.|+-+..++.
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeCC
Confidence 12223689999999999999999999985
No 189
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.93 E-value=8 Score=40.00 Aligned_cols=112 Identities=23% Similarity=0.243 Sum_probs=70.6
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE---------eccChhhHHHHHHHHhhC---CCEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM---------ADVMPAGKADAVRSFQKD---GSIVAM 797 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~---------a~~~P~~K~~~V~~lq~~---g~~v~~ 797 (924)
++-+++.+++++|++. .++.++|--.........+++|+.+.| ....|+.+ -+-..+++. ...++|
T Consensus 99 ~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~-~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 99 PDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPE-IFEYALEKLGVPPEEALF 176 (229)
T ss_pred ccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcH-HHHHHHHHcCCCcceEEE
Confidence 4678899999999988 899999976777888889999976422 23455444 333344444 346999
Q ss_pred EcCC-cCCHHHHhcCCc-eEEecCCh---HHHHHhcCEEEecCChhHHHHHHH
Q 002427 798 VGDG-INDSPALAAADV-GMAIGAGT---DIAIEAADYVLMRNSLEDVIIAID 845 (924)
Q Consensus 798 vGDg-~nD~~al~~A~v-gia~~~~~---~~a~~~ad~vl~~~~l~~l~~~i~ 845 (924)
|||. .||...-++++. ++-+..+. .......|..+ .++..+..++.
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~~ 227 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLLE 227 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHHh
Confidence 9996 667344455554 34443211 11114566666 55666666553
No 190
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=82.34 E-value=8.2 Score=41.62 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=61.0
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HHHHcCCceEEeccChhhHHHHHHHH
Q 002427 712 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHA---VAREIGIQDVMADVMPAGKADAVRSF 788 (924)
Q Consensus 712 ~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~---iA~~~gi~~v~a~~~P~~K~~~V~~l 788 (924)
.+.+-.||++. -.+.+=|++.++|++|++.|++++++|+....+... --+++|+..-..+.-+.. ....+.|
T Consensus 4 ~~~~D~DGtl~----~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~-~~~~~~l 78 (279)
T TIGR01452 4 GFIFDCDGVLW----LGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA-LCAARLL 78 (279)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH-HHHHHHH
Confidence 45555666653 356777889999999999999999999965443332 235678742111111111 1223344
Q ss_pred hh---CCCEEEEEcCCcCCHHHHhcCCceEE
Q 002427 789 QK---DGSIVAMVGDGINDSPALAAADVGMA 816 (924)
Q Consensus 789 q~---~g~~v~~vGDg~nD~~al~~A~vgia 816 (924)
++ .+..|.++|+. .....++.+++-+.
T Consensus 79 ~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 79 RQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 44 25689999985 34556676666544
No 191
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=82.08 E-value=5.8 Score=33.78 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=47.4
Q ss_pred eeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 129 VGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 129 ~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
...+.+.++.|..|...++..+...+++....++.......+.+++.......+...+...|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAG 85 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcC
Confidence 34577899999999999999999999999899998888888887654344444444444445
No 192
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=81.41 E-value=1.8 Score=43.09 Aligned_cols=47 Identities=23% Similarity=0.472 Sum_probs=41.2
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCCe-------------------EEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISGE-------------------LEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~~-------------------~~V~yd~~~~~~~~i~~~I 186 (924)
+.|=|-+|+.+.+++||.++++-++.+. +.|.|||..++.++|++..
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~F 80 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIF 80 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHH
Confidence 3588999999999999999999777653 8999999999999999854
No 193
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=80.71 E-value=4.7 Score=41.80 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=69.8
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec-----------cChhhHHHHHHHHhhCCCEEE
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD-----------VMPAGKADAVRSFQKDGSIVA 796 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~-----------~~P~~K~~~V~~lq~~g~~v~ 796 (924)
..++.|++.+.+++|++.|+.+.+.|+-....+..+.+.+|+.+.|.- -.|+-=+...+.|.-....+.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 357899999999999999999999999999999999999999865432 223333444555433556799
Q ss_pred EEcCCcCCHHHHhcCCce
Q 002427 797 MVGDGINDSPALAAADVG 814 (924)
Q Consensus 797 ~vGDg~nD~~al~~A~vg 814 (924)
.+.|..|.+.|-++|+.-
T Consensus 164 viEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EEecchhHHHHHHHCCCE
Confidence 999999999999999976
No 194
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=80.66 E-value=1.1 Score=43.90 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EE----ec-cChhhHHHHHHHHhhCC---CEEEEEcC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VM----AD-VMPAGKADAVRSFQKDG---SIVAMVGD 800 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-v~----a~-~~P~~K~~~V~~lq~~g---~~v~~vGD 800 (924)
..||++.+.+++|++. +++++.|--....|..+.+.++... .+ .| .....|..+++.|..-| ..|.||||
T Consensus 42 ~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD 120 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDN 120 (162)
T ss_pred EECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeC
Confidence 4799999999999987 9999999999999999999999753 22 22 11111222445554433 46999999
Q ss_pred CcCCHHHHhcCCce
Q 002427 801 GINDSPALAAADVG 814 (924)
Q Consensus 801 g~nD~~al~~A~vg 814 (924)
...|..+-..+.+-
T Consensus 121 ~~~~~~~~~~NgI~ 134 (162)
T TIGR02251 121 SPYSYSLQPDNAIP 134 (162)
T ss_pred ChhhhccCccCEee
Confidence 98887654444433
No 195
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=80.44 E-value=10 Score=40.17 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=52.2
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHH----HHHHHHHHcCCc---eEEeccCh--------hhHHHHHHHHhhCC
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWR----TAHAVAREIGIQ---DVMADVMP--------AGKADAVRSFQKDG 792 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~----ta~~iA~~~gi~---~v~a~~~P--------~~K~~~V~~lq~~g 792 (924)
+.|.=|++.+..+.+++.|++|+.+||-... |...+ ++.|+. +++-|-.. +-|...-+.+.++|
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eG 221 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEG 221 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcC
Confidence 4456679999999999999999999997653 33343 346774 34444221 22444445555566
Q ss_pred C-EEEEEcCCcCCH
Q 002427 793 S-IVAMVGDGINDS 805 (924)
Q Consensus 793 ~-~v~~vGDg~nD~ 805 (924)
+ +++.+||-.+|.
T Consensus 222 YrIv~~iGDq~sDl 235 (275)
T TIGR01680 222 YNIVGIIGDQWNDL 235 (275)
T ss_pred ceEEEEECCCHHhc
Confidence 5 788999999997
No 196
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=79.16 E-value=4.8 Score=43.10 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=47.5
Q ss_pred eEEEEEECCeEEEEEEecCC--Cc-HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce
Q 002427 711 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD 771 (924)
Q Consensus 711 ~~i~va~~~~~lG~i~l~D~--lr-~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~ 771 (924)
+++++-.|++++-- +.+ +| |++.+++++|+++|+++.++|+-+...+..+.+.+|+..
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~ 189 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG 189 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc
Confidence 46677778876644 444 46 999999999999999999999777778888999999974
No 197
>PRK13748 putative mercuric reductase; Provisional
Probab=79.02 E-value=5.6 Score=47.73 Aligned_cols=66 Identities=23% Similarity=0.444 Sum_probs=52.0
Q ss_pred eeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcCCccceeeccc
Q 002427 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMN 200 (924)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g~~~y~~~~~~ 200 (924)
.+.+.+|+|.+|...++..+...+++....+++..+...+.|++. ....++...+++.+ |...+..
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g---~~~~~~~ 68 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLG---YRATLAD 68 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcC---CeeeccC
Confidence 356889999999999999999999999999999999988888753 45566666666677 5554433
No 198
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=78.69 E-value=2.5 Score=42.88 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=41.3
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC-------------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~yd~~~~~~~~i~~~I 186 (924)
+.|=|-+|+.+++++||.++++-++.+ .+.|.|||..++.++|++..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~F 117 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVF 117 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 468999999999999999999987743 48999999999999999864
No 199
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=78.34 E-value=3.5 Score=39.64 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=40.4
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCC-------------------CeEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~-------------------~~~~V~yd~~~~~~~~i~~~I 186 (924)
..|=|-+|..+.+++||.++++-++. ..+.|.|||..++.++|++..
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f 72 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVF 72 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHH
Confidence 35889999999999999999986554 358899999999999999854
No 200
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=76.78 E-value=3.8 Score=39.86 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=41.0
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC-------------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~yd~~~~~~~~i~~~I 186 (924)
..|=|=+|+.+.++|||.++.+-++.+ .+.|.|||..++.++|++..
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~f 78 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVF 78 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHH
Confidence 358899999999999999999876663 58999999999999999864
No 201
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=76.56 E-value=6.3 Score=39.14 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=55.2
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcC---C--CHHHHH----------HHHHHcC--Cce-EEeccChhh--------HHHH
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTG---D--NWRTAH----------AVAREIG--IQD-VMADVMPAG--------KADA 784 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTG---D--~~~ta~----------~iA~~~g--i~~-v~a~~~P~~--------K~~~ 784 (924)
+.+++.+++..|+++|++++|+|- . -..+.. .+=++.| |+. .+|.-.|++ ..-+
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 568999999999999999999984 1 111111 1112233 222 455555554 2344
Q ss_pred HHHHhhCC---CEEEEEcCCcCCHHHHhcCCce
Q 002427 785 VRSFQKDG---SIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 785 V~~lq~~g---~~v~~vGDg~nD~~al~~A~vg 814 (924)
.+.+++.+ ....||||-..|..+-..+++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 55555544 5688999999999998888887
No 202
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.90 E-value=18 Score=34.36 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHcCCeEEEEEE--------------CCeEEEEEEecCCCcHhHHHHHHHHHHCCC-e-EEEEcCCC------HHHHH
Q 002427 704 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-R-PVMVTGDN------WRTAH 761 (924)
Q Consensus 704 ~~~~~g~~~i~va~--------------~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~-v~mlTGD~------~~ta~ 761 (924)
-+...|++++++.. +-.++|+-.+.-.-.+.+++.++.|++.|. + .+++-|-- +....
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~ 105 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVE 105 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHH
Confidence 45567777777654 336888888888999999999999999965 2 34555532 34455
Q ss_pred HHHHHcCCceEEeccChhhH
Q 002427 762 AVAREIGIQDVMADVMPAGK 781 (924)
Q Consensus 762 ~iA~~~gi~~v~a~~~P~~K 781 (924)
..++++|++.+|..-+|.+.
T Consensus 106 ~~l~~~G~~~vf~~~~~~~~ 125 (137)
T PRK02261 106 KKFKEMGFDRVFPPGTDPEE 125 (137)
T ss_pred HHHHHcCCCEEECcCCCHHH
Confidence 67899999999986665544
No 203
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=75.54 E-value=6.1 Score=41.39 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=28.0
Q ss_pred EECCeEEEEEEe--cCCCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 002427 716 AYDDNLIGVMGI--ADPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 716 a~~~~~lG~i~l--~D~lr~~~~~~I~~L~~~-gi~v~mlTGD~~~ta~~iA~~~gi 769 (924)
-|||++..+..- .-.+.+++.+++++|.+. +..++++||-..........--+|
T Consensus 3 DyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 3 DYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp E-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred ccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 455655555443 234568899999999876 457999999999886555443333
No 204
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=75.49 E-value=22 Score=33.60 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=47.4
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCe--EEEEcCCC------HHHHHHHHHHcCCceEEeccChhhHHHHHHHHhh
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDN------WRTAHAVAREIGIQDVMADVMPAGKADAVRSFQK 790 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~~gi~--v~mlTGD~------~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~ 790 (924)
.++|+-++.=.--+..+++++.|+++|++ .+++=|-- ...-..-++++|++.+|..-+|-+ +++..+++
T Consensus 54 diVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~--~iv~~l~~ 130 (134)
T TIGR01501 54 DAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPE--VVIADLKK 130 (134)
T ss_pred CEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHH--HHHHHHHH
Confidence 56777777667777889999999999873 45666631 112244579999999998776653 35555543
No 205
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=74.72 E-value=6.6 Score=38.07 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=62.6
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCH----HHHHHHHHHcCCce----EEeccChh-hHHHHHHHHhhCCCEEEEEcCC
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNW----RTAHAVAREIGIQD----VMADVMPA-GKADAVRSFQKDGSIVAMVGDG 801 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~----~ta~~iA~~~gi~~----v~a~~~P~-~K~~~V~~lq~~g~~v~~vGDg 801 (924)
+|+=+++.|..-++.|-++..+||..+ .++..+|+...|.+ +|+.-.|. .+..-...+|+++. -..-||.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~-~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI-RIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc-eEEecCC
Confidence 567778889988899999999999765 46778888888864 56655551 12233455666665 4688999
Q ss_pred cCCHHHHhcCCc-eEEe
Q 002427 802 INDSPALAAADV-GMAI 817 (924)
Q Consensus 802 ~nD~~al~~A~v-gia~ 817 (924)
-||.-|-+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999998876 3444
No 206
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=74.14 E-value=11 Score=44.43 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=61.5
Q ss_pred eEEEEEECCeEEEE----EEecCC-----CcHhHHHHHHHHHHCCCeEEEEcCCCH------------HHHHHHHHHcCC
Q 002427 711 TGILVAYDDNLIGV----MGIADP-----VKREAAVVVEGLLKMGVRPVMVTGDNW------------RTAHAVAREIGI 769 (924)
Q Consensus 711 ~~i~va~~~~~lG~----i~l~D~-----lr~~~~~~I~~L~~~gi~v~mlTGD~~------------~ta~~iA~~~gi 769 (924)
+++++-.|++++-. ....|+ +-|++.+.++.|++.|++++++|.=.. ..+..+.+++|+
T Consensus 169 Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi 248 (526)
T TIGR01663 169 KIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV 248 (526)
T ss_pred cEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 46777778877632 112221 468999999999999999999996433 346778888887
Q ss_pred c-eEEeccCh--hhH--HHHHH-HHhhCC-------CEEEEEcCCcCCHHHHh
Q 002427 770 Q-DVMADVMP--AGK--ADAVR-SFQKDG-------SIVAMVGDGINDSPALA 809 (924)
Q Consensus 770 ~-~v~a~~~P--~~K--~~~V~-~lq~~g-------~~v~~vGDg~nD~~al~ 809 (924)
. .++..... -.| ...+. .+++.+ ..+.||||-..|..+-+
T Consensus 249 pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~ 301 (526)
T TIGR01663 249 PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGK 301 (526)
T ss_pred ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHH
Confidence 5 22221110 012 12222 222222 35889999999986533
No 207
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=73.83 E-value=5.5 Score=38.60 Aligned_cols=48 Identities=27% Similarity=0.458 Sum_probs=41.0
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC-------------------eEEEeeCCCCCChhhHHHhhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGIA 187 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~yd~~~~~~~~i~~~I~ 187 (924)
+.|=|-.|..+.+++||.++++-+..+ .+.|.|||..++.++|++..-
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~ 73 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFF 73 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHH
Confidence 468999999999999999999977664 589999999999999998653
No 208
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=73.67 E-value=11 Score=37.01 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=55.5
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcCCc----------eEE--eccChhhHHHHHHHHhhC----CC
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVT-GDNWRTAHAVAREIGIQ----------DVM--ADVMPAGKADAVRSFQKD----GS 793 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlT-GD~~~ta~~iA~~~gi~----------~v~--a~~~P~~K~~~V~~lq~~----g~ 793 (924)
+-|+++++++.|++.|+++.+.| -|.+..|+++-+.++|. ++| .+.-|..|..-.+.++++ -.
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GG
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChh
Confidence 56899999999999999999999 58899999999999998 444 466788999999988864 23
Q ss_pred EEEEEcCCcCCHHHHh
Q 002427 794 IVAMVGDGINDSPALA 809 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~ 809 (924)
.+++.=|-.......+
T Consensus 126 eMlFFDDe~~N~~~v~ 141 (169)
T PF12689_consen 126 EMLFFDDESRNIEVVS 141 (169)
T ss_dssp GEEEEES-HHHHHHHH
T ss_pred HEEEecCchhcceeeE
Confidence 4677777654444433
No 209
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=73.63 E-value=3.1 Score=41.14 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-----ecc----ChhhH--HHHHHHHhhCCCEEEEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM-----ADV----MPAGK--ADAVRSFQKDGSIVAMV 798 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~-----a~~----~P~~K--~~~V~~lq~~g~~v~~v 798 (924)
++.|++.++++ ++.++|.-+......+-+.+|+.+.| ++. .|.-. ....+.+.-....++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 47889999988 36789998888888888999987433 221 23222 33334443334569999
Q ss_pred cCCcCCHHHHhc
Q 002427 799 GDGINDSPALAA 810 (924)
Q Consensus 799 GDg~nD~~al~~ 810 (924)
||...|..+-++
T Consensus 163 gD~~~Di~~A~~ 174 (175)
T TIGR01493 163 AAHQWDLIGARK 174 (175)
T ss_pred ecChhhHHHHhc
Confidence 999999876554
No 210
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=71.52 E-value=28 Score=24.51 Aligned_cols=42 Identities=48% Similarity=0.753 Sum_probs=32.8
Q ss_pred EeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECC
Q 002427 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDP 92 (924)
Q Consensus 51 ~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~ 92 (924)
.+.++.|..|...++..+...+++.....++......+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP 44 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECC
Confidence 367889999999999988888888777777776666665543
No 211
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=71.34 E-value=7.1 Score=40.35 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=36.4
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
.-+.++++|++|++.|++++++||-....+..+.+++|+.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3345899999999999999999999999999999999975
No 212
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.06 E-value=39 Score=33.56 Aligned_cols=123 Identities=21% Similarity=0.221 Sum_probs=79.0
Q ss_pred CcHhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEEEcCC--cCCHHH
Q 002427 731 VKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDG--INDSPA 807 (924)
Q Consensus 731 lr~~~~~~I~~L-~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg--~nD~~a 807 (924)
.=+++.+..+++ .+.|.++++-.| .||..+.+.+++.-+--..|..|=.+.++..++.+.+++++|.. .+|...
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~ 94 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLES 94 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHH
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHH
Confidence 346677788888 788999999888 68888999999988888888888888888887778888887765 233332
Q ss_pred Hh--------------------------cCCceEEecCC--hHHHHH-hcCEEEecCChhHHHHHHHHHHHHHHHHHH
Q 002427 808 LA--------------------------AADVGMAIGAG--TDIAIE-AADYVLMRNSLEDVIIAIDLSRKTFARIRL 856 (924)
Q Consensus 808 l~--------------------------~A~vgia~~~~--~~~a~~-~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~ 856 (924)
+. ..++.+-+|++ .+.|++ .-..++...+-.++..++..++++.+..++
T Consensus 95 ~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~~~ 172 (176)
T PF06506_consen 95 IEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALRIARARRR 172 (176)
T ss_dssp HHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 22 22344444422 223322 345677777899999999999998887764
No 213
>PRK13748 putative mercuric reductase; Provisional
Probab=69.34 E-value=15 Score=44.05 Aligned_cols=64 Identities=27% Similarity=0.534 Sum_probs=51.0
Q ss_pred EEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchhhh
Q 002427 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (924)
Q Consensus 50 ~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (924)
+.+.+|+|++|..+++..+...+++.....++..+...+.+++. .+...+...++++||...+.
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~ 67 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLA 67 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeecc
Confidence 56899999999999999999999999899999888877776542 45566666667788875543
No 214
>PTZ00445 p36-lilke protein; Provisional
Probab=68.83 E-value=8 Score=39.19 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=73.8
Q ss_pred hhHHHHHHHHcCCeEEEEEECCeEEEEE--EecCC----------CcHhHHHHHHHHHHCCCeEEEEcCCCHHH------
Q 002427 698 VESFVVELEESARTGILVAYDDNLIGVM--GIADP----------VKREAAVVVEGLLKMGVRPVMVTGDNWRT------ 759 (924)
Q Consensus 698 ~~~~~~~~~~~g~~~i~va~~~~~lG~i--~l~D~----------lr~~~~~~I~~L~~~gi~v~mlTGD~~~t------ 759 (924)
.....+.+.+.|-+++++-.|+++++.= +.-++ ++|+.+..+++|+++||++.++|=-.+.+
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~ 110 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENR 110 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCC
Confidence 4456677889999999999999887611 12233 79999999999999999999998433322
Q ss_pred ---------HHHHHHH----cCCceEEecc------------------ChhhHHHHHHHHh-hC---CCEEEEEcCCcCC
Q 002427 760 ---------AHAVARE----IGIQDVMADV------------------MPAGKADAVRSFQ-KD---GSIVAMVGDGIND 804 (924)
Q Consensus 760 ---------a~~iA~~----~gi~~v~a~~------------------~P~~K~~~V~~lq-~~---g~~v~~vGDg~nD 804 (924)
+.+.-+. ..|..++|-- .|+-|.--.+.+. +. ...++++=|....
T Consensus 111 ~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 111 PRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred cceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 2222232 2233444321 2334333223332 22 3468999999888
Q ss_pred HHHHhcCCc
Q 002427 805 SPALAAADV 813 (924)
Q Consensus 805 ~~al~~A~v 813 (924)
+.+-++.++
T Consensus 191 VeaA~~lGi 199 (219)
T PTZ00445 191 CKNALKEGY 199 (219)
T ss_pred HHHHHHCCC
Confidence 887776554
No 215
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=68.34 E-value=6.7 Score=41.82 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=40.9
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC-------------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~yd~~~~~~~~i~~~I 186 (924)
..|=|-+|+.+.+++||.++++-++.+ .+.|+|||..++.++|++..
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F 199 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVF 199 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 468999999999999999999876654 38999999999999999854
No 216
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.20 E-value=37 Score=39.89 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.7
Q ss_pred CCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecc
Q 002427 370 KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 409 (924)
Q Consensus 370 ~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~ 409 (924)
||| ...++|..-++.||||-.+||+.-||.+.=++++
T Consensus 162 RDG---hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 162 RDG---HLMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred ccC---eeeecceeEEEeccEEEecCCccccccccccCCC
Confidence 677 4588999999999999999999999988766653
No 217
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=67.42 E-value=29 Score=33.62 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=58.0
Q ss_pred cCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHHc-----CCc-----------------eEEeccChhhHH
Q 002427 728 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH---AVAREI-----GIQ-----------------DVMADVMPAGKA 782 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~---~iA~~~-----gi~-----------------~v~a~~~P~~K~ 782 (924)
.|..++++.+..+.+++.|++++-||+-...-+. ..-++. ++. ++..+-.-+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 3677888888888888888888888876643332 222222 332 233333346799
Q ss_pred HHHHHHhhC-----CCEEEEEcCCcCCHHHHhcCCce
Q 002427 783 DAVRSFQKD-----GSIVAMVGDGINDSPALAAADVG 814 (924)
Q Consensus 783 ~~V~~lq~~-----g~~v~~vGDg~nD~~al~~A~vg 814 (924)
..++.+++. ...++..|.-.+|+.+-++++|.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 999999874 33577788888999988877664
No 218
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=65.75 E-value=2.1e+02 Score=37.38 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=18.4
Q ss_pred CCEEEECCCCcccceEEEEe
Q 002427 388 GDTLKVLPGTKLPADGIVVW 407 (924)
Q Consensus 388 GDii~v~~G~~iP~Dg~vl~ 407 (924)
|....+...|..|-|.+++.
T Consensus 94 ~~~~~i~~~~l~~GDiv~l~ 113 (1057)
T TIGR01652 94 GQFVEIPWKDLRVGDIVKVK 113 (1057)
T ss_pred CcEEEeeeecccCCCEEEEc
Confidence 68889999999999999987
No 219
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.68 E-value=38 Score=36.70 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=37.0
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCC-cCCHH---HHhcCCceEEecC----ChHHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDG-INDSP---ALAAADVGMAIGA----GTDIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg-~nD~~---al~~A~vgia~~~----~~~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++...- .|+.|+++|-| +-=.| .|..++..+.+-+ ....+...||+++.-
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 455666655555554432 48999999997 44444 3455665555531 123344678998864
No 220
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=64.18 E-value=75 Score=33.84 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=51.1
Q ss_pred HHHcCCeEEEEEECCeEEEEEEe--cCCCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 002427 705 LEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAREIGI 769 (924)
Q Consensus 705 ~~~~g~~~i~va~~~~~lG~i~l--~D~lr~~~~~~I~~L~~~-gi~v~mlTGD~~~ta~~iA~~~gi 769 (924)
+.....+.+.+-+||++.-.+-. ...+-++..++++.|... ..-++|+||-+..-......-.||
T Consensus 13 ~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 13 YLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred cccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 34556778899999988766655 556777889999999887 457999999999988888775555
No 221
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=63.22 E-value=28 Score=38.50 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=34.4
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-C
Q 002427 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI-G 768 (924)
Q Consensus 732 r~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~-g 768 (924)
-|++.+++++|+++|+++.++|.-....+..+.+.+ |
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999996 7
No 222
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=63.13 E-value=1.2e+02 Score=32.67 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=62.5
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC---hhh
Q 002427 704 ELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM---PAG 780 (924)
Q Consensus 704 ~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~---P~~ 780 (924)
-..+.|..++++.-+..=+| +.+.=.|+..++.+. +..+|+-|....+....|+..++.-+-+-.. |-|
T Consensus 65 a~~qlGg~~~~l~~~~~Qlg----r~Esi~DTArVLsr~----~D~I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q 136 (310)
T COG0078 65 AATQLGGHAIYLGPGDSQLG----RGESIKDTARVLSRM----VDAIMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQ 136 (310)
T ss_pred HHHHcCCCeEEeCCCccccC----CCCcHHHHHHHHHhh----hheEEEecccHHHHHHHHHhCCCceEcccccccCcHH
Confidence 34567788888776654444 333334444444444 5678899999999999999999964433222 333
Q ss_pred HHHHHHHHhh-----CCCEEEEEcCCcCCHH--HHhcCCceE
Q 002427 781 KADAVRSFQK-----DGSIVAMVGDGINDSP--ALAAADVGM 815 (924)
Q Consensus 781 K~~~V~~lq~-----~g~~v~~vGDg~nD~~--al~~A~vgi 815 (924)
=+.=+..+++ +|.+++++|||.|=+- ++..|-+|+
T Consensus 137 ~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~ 178 (310)
T COG0078 137 ALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGM 178 (310)
T ss_pred HHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCC
Confidence 3222222222 4789999999955333 334444443
No 223
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=62.54 E-value=30 Score=24.28 Aligned_cols=41 Identities=39% Similarity=0.767 Sum_probs=34.2
Q ss_pred eCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCC
Q 002427 134 IGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDP 174 (924)
Q Consensus 134 i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~ 174 (924)
+.++.|..|...++......+++.....++......+.|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP 44 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECC
Confidence 56888999999999999888998888888877777777754
No 224
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.11 E-value=32 Score=31.81 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEeccChhhH
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMADVMPAGK 781 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K 781 (924)
.++++-.......+.+++.++.|+++|. ++ +++-|..+.--..-.++.|++.+|..-++.+.
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~ 115 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEE 115 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHH
Confidence 4566666677888999999999999977 43 55666555444556679999987765554443
No 225
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=61.96 E-value=45 Score=31.17 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCH------HHHHHHHHHcCCceEEeccChhhHHHHHHHH
Q 002427 719 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNW------RTAHAVAREIGIQDVMADVMPAGKADAVRSF 788 (924)
Q Consensus 719 ~~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~------~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~l 788 (924)
-.++|+-++.-.--+..+++++.|+++|+ .+ +|+-|--. ..-..-.+++|++.+|..-+|-+ +++..|
T Consensus 51 adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~--~i~~~l 126 (128)
T cd02072 51 ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPE--EAIADL 126 (128)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHH--HHHHHH
Confidence 35788888887888899999999999998 55 45555421 23345678899999997655433 244444
No 226
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=61.28 E-value=57 Score=41.80 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=85.3
Q ss_pred EEEEEeCCCCCh----hhHHHHHHHhhCCCCeeEEEEEe--cCCEEEEEECCCCCChH----hHHHHHHhccc--chhhh
Q 002427 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL--LQNKADVVFDPDLVKDE----DIKNAIEDAGF--EAEIL 114 (924)
Q Consensus 47 ~~~~~I~gm~C~----~C~~~ie~~l~~~~GV~~~~v~~--~~~~~~v~~~~~~~~~~----~i~~~i~~~Gy--~~~~~ 114 (924)
.++-.-+|-+-. .-...+|++++..+|+.+.+-.- ....++++++.+ .+++ ++.+.+.+... +.. .
T Consensus 45 ~V~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~-~ 122 (1009)
T COG0841 45 VVSATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSG-V 122 (1009)
T ss_pred EEEEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCc-c
Confidence 344555665543 34578899999999988766543 444556667665 4454 45555554432 111 1
Q ss_pred cccCCCCCCCCcceeeeeeeCC--Cccc----chHhhHHhhhhcCCCceeEEEecC-CCeEEEeeCCCC-----CChhhH
Q 002427 115 AESSTSGPKPQGTIVGQYTIGG--MTCA----ACVNSVEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSL 182 (924)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~i~g--m~C~----~C~~~ie~~l~~~~GV~~v~vn~~-~~~~~V~yd~~~-----~~~~~i 182 (924)
..+.....+..+.....+.+.. +.-. --...++..|+++|||.+|++.-. ...+.|..||++ +++.++
T Consensus 123 ~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV 202 (1009)
T COG0841 123 QQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDV 202 (1009)
T ss_pred CCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHH
Confidence 1111111112222233333333 3211 134568889999999999998765 789999999976 678999
Q ss_pred HHhhhhc
Q 002427 183 VDGIAGR 189 (924)
Q Consensus 183 ~~~I~~~ 189 (924)
.++|++.
T Consensus 203 ~~ai~~q 209 (1009)
T COG0841 203 QSAIRAQ 209 (1009)
T ss_pred HHHHHHh
Confidence 9998763
No 227
>PLN02423 phosphomannomutase
Probab=59.30 E-value=15 Score=38.66 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhCCCEEEEEcC----CcCCHHHHhc-CCceEEecC
Q 002427 780 GKADAVRSFQKDGSIVAMVGD----GINDSPALAA-ADVGMAIGA 819 (924)
Q Consensus 780 ~K~~~V~~lq~~g~~v~~vGD----g~nD~~al~~-A~vgia~~~ 819 (924)
+|..-++.|+ ....|+++|| |-||.+||+. --.|+.+.+
T Consensus 189 nKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 189 DKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 7999999999 6778999999 8999999996 667888854
No 228
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=58.84 E-value=37 Score=37.39 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=55.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHHC----CCeEEEEcCCC---HH-HHHHHHHHcCCceEEeccChhh----HHHHHHHHhh
Q 002427 723 GVMGIADPVKREAAVVVEGLLKM----GVRPVMVTGDN---WR-TAHAVAREIGIQDVMADVMPAG----KADAVRSFQK 790 (924)
Q Consensus 723 G~i~l~D~lr~~~~~~I~~L~~~----gi~v~mlTGD~---~~-ta~~iA~~~gi~~v~a~~~P~~----K~~~V~~lq~ 790 (924)
|++.-.+++-+++.++++.|+.. |+++..+|-.. .. .+..+.+++|+. +.|++ ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~-----~~~~~i~~s~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD-----VSPLQVIQSHSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC-----CCHHHHHhhhHHHHHHHHH
Confidence 56677888999999999999998 99999998543 33 366677888884 23332 1222233333
Q ss_pred CCCEEEEEcCCcCCHHHHhcCC
Q 002427 791 DGSIVAMVGDGINDSPALAAAD 812 (924)
Q Consensus 791 ~g~~v~~vGDg~nD~~al~~A~ 812 (924)
.+.++.++|.+. -...++.++
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G 104 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYG 104 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcC
Confidence 344688998763 344455443
No 229
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=57.25 E-value=11 Score=38.64 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=31.6
Q ss_pred HhhHHhhhhcCCCceeEEEec--------------CCCeEEEeeCCCCCCh----hhHHHhhhh
Q 002427 143 VNSVEGILSNFKGVRQFRFDK--------------ISGELEVLFDPEALSS----RSLVDGIAG 188 (924)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~vn~--------------~~~~~~V~yd~~~~~~----~~i~~~I~~ 188 (924)
...+|+.+++++||.+++|.. .+-++.+.|.|+. +. .+|.+.|.+
T Consensus 111 eQ~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~-nl~~~v~~IK~LV~n 173 (246)
T COG4669 111 EQQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDV-NLSIYVSQIKRLVAN 173 (246)
T ss_pred HHHHHHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCC-ChhHhHHHHHHHHHh
Confidence 468999999999999887642 2457889998873 33 444444444
No 230
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=57.15 E-value=48 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=41.3
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecC-------------------CEEEEEECCCCCChHhHHHHHHh
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQ-------------------NKADVVFDPDLVKDEDIKNAIED 106 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~ 106 (924)
++|=|.+|....+++||.++.+=+.. +.+.|.||+..++.+++.+..-+
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~ 119 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWE 119 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHH
Confidence 68999999999999999999987763 34678999999999998877643
No 231
>PLN02591 tryptophan synthase
Probab=55.55 E-value=1.3e+02 Score=31.78 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=63.4
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE-EEcCCCH-HHHHHHHHHc-CCceEEec
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDNW-RTAHAVAREI-GIQDVMAD 775 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~-mlTGD~~-~ta~~iA~~~-gi~~v~a~ 775 (924)
+++.++..+.|...+ +.- |-+=++..+..+.+++.|+..+ ++|-... +..+.+++.. |..-+.++
T Consensus 96 ~~F~~~~~~aGv~Gv-----------iip-DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~ 163 (250)
T PLN02591 96 DKFMATIKEAGVHGL-----------VVP-DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSS 163 (250)
T ss_pred HHHHHHHHHcCCCEE-----------EeC-CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC
Confidence 455666666664433 333 4444889999999999999854 5656553 4667777775 55432221
Q ss_pred --------cChhhHHHHHHHHhhCCCEEEEEcCCcCCHH
Q 002427 776 --------VMPAGKADAVRSFQKDGSIVAMVGDGINDSP 806 (924)
Q Consensus 776 --------~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~ 806 (924)
-.|++=.+.++.+|+....-.++|=|+++..
T Consensus 164 ~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e 202 (250)
T PLN02591 164 TGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPE 202 (250)
T ss_pred CCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHH
Confidence 2256666778888886666778999999543
No 232
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=54.78 E-value=2e+02 Score=30.65 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=65.0
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeE-EEEcCCC-HHHHHHHHHHcC-CceEEec
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDN-WRTAHAVAREIG-IQDVMAD 775 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v-~mlTGD~-~~ta~~iA~~~g-i~~v~a~ 775 (924)
+++.++..+.|-..+ .+-|.+=++..+.++.+++.|+.. .+++=.. .+.-..+++... ..-+.++
T Consensus 109 e~F~~~~~~aGvdgv------------iipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~ 176 (263)
T CHL00200 109 NKFIKKISQAGVKGL------------IIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVST 176 (263)
T ss_pred HHHHHHHHHcCCeEE------------EecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcC
Confidence 456667777765443 346666789999999999999984 5666655 456677888775 4322121
Q ss_pred --------cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHH
Q 002427 776 --------VMPAGKADAVRSFQKDGSIVAMVGDGINDSPA 807 (924)
Q Consensus 776 --------~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~a 807 (924)
..|++-.+.++.+|+.-..-.++|=|+|+..-
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~ 216 (263)
T CHL00200 177 TGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQ 216 (263)
T ss_pred CCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHH
Confidence 22455567788888765555678999996543
No 233
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.74 E-value=62 Score=34.79 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=37.3
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcC-CcCCHH---HHhcCCceEEe--cCCh--HHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGD-GINDSP---ALAAADVGMAI--GAGT--DIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGD-g~nD~~---al~~A~vgia~--~~~~--~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++...- .|+.++++|- |+-=.| .|..++.-+.+ .... ......||+++.-
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 456777665555554432 4899999999 555555 34455544444 3222 2345679999863
No 234
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.50 E-value=55 Score=35.13 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=36.0
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcCC----HHHHh--cCCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIND----SPALA--AADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~nD----~~al~--~A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|..+|.+..= +.+|. .|.|-++.....+ .....||+++.-
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEe
Confidence 44566655555554432 248999999998542 22333 3556666653322 334679999864
No 235
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.43 E-value=63 Score=34.79 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=36.2
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcC-C---HHHHhc--CCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIN-D---SPALAA--ADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~n-D---~~al~~--A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++..+ -.|+.|+.+|.|.. = +.+|.. |.|-++.....+ .....||+++.-
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEc
Confidence 45566655555555443 24899999999865 1 234444 444444442222 345689999974
No 236
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=53.18 E-value=66 Score=31.39 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC--hhhH---HHHHHHHhhCCCEE-EEEcCCcCCHHH
Q 002427 735 AAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM--PAGK---ADAVRSFQKDGSIV-AMVGDGINDSPA 807 (924)
Q Consensus 735 ~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~--P~~K---~~~V~~lq~~g~~v-~~vGDg~nD~~a 807 (924)
..+.=++|++.|+..+++.||....-..+++++|+..|++.-. |+++ .++.+.+++.|-.+ .+-++.+-+...
T Consensus 55 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~ 133 (165)
T PF00875_consen 55 LADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDD 133 (165)
T ss_dssp HHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHH
T ss_pred HHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEeccc
Confidence 3445566788899999999999999999999999999988644 4433 24455566666554 344444444443
No 237
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=21 Score=34.58 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=40.4
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC-------------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~-------------------~~~V~yd~~~~~~~~i~~~I 186 (924)
..|=|-.|.+..++|||..-+|-++.+ .+.|+|||..++-++|++..
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~F 96 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFF 96 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHH
Confidence 358999999999999999999876653 58899999999999998754
No 238
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=52.89 E-value=68 Score=41.61 Aligned_cols=140 Identities=16% Similarity=0.291 Sum_probs=81.4
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEe---cCCEEEEEECCCCCChHh----HHHHHHhc--ccchhh
Q 002427 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKDED----IKNAIEDA--GFEAEI 113 (924)
Q Consensus 47 ~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~~~~~~~~~~----i~~~i~~~--Gy~~~~ 113 (924)
.+...=+|.+-.- -...+|++++..+|+++++..- ......++++.+ .+.++ +.+.+... ..+...
T Consensus 44 ~V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~v 122 (1037)
T PRK10555 44 RITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAG-TDPDEAVQQVQNQLQSAMRKLPQAV 122 (1037)
T ss_pred EEEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3444446655433 3467899999999999988743 224566777766 34443 44444322 122110
Q ss_pred hcccCCCCCCCCcceeeeeee---CC-Ccc----cchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCC-----CChh
Q 002427 114 LAESSTSGPKPQGTIVGQYTI---GG-MTC----AACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSR 180 (924)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~i---~g-m~C----~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~-----~~~~ 180 (924)
+................+.+ ++ ++- ..-.+.++..|++++||.+++++-....+.|..||++ ++..
T Consensus 123 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~ 201 (1037)
T PRK10555 123 -QNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTK 201 (1037)
T ss_pred -ccCCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHH
Confidence 00000000111111223333 22 221 1134678999999999999999876677999999865 7889
Q ss_pred hHHHhhhh
Q 002427 181 SLVDGIAG 188 (924)
Q Consensus 181 ~i~~~I~~ 188 (924)
++.+.|++
T Consensus 202 ~v~~al~~ 209 (1037)
T PRK10555 202 DVTDAIES 209 (1037)
T ss_pred HHHHHHHH
Confidence 99998875
No 239
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.85 E-value=60 Score=34.90 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=37.8
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcC-C---HHHH--hcCCceEEecCChHH--HHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIN-D---SPAL--AAADVGMAIGAGTDI--AIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~n-D---~~al--~~A~vgia~~~~~~~--a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++..+- .|+.|+.+|.|.. - +.+| +.|.|-++.....+. ....||+++.-
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEe
Confidence 445777666666665532 4899999999922 1 2233 335666665533332 45789999864
No 240
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=52.78 E-value=17 Score=38.81 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=69.9
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc----CCc----eEEeccChhhHHHHHHHHhhC--C
Q 002427 723 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI----GIQ----DVMADVMPAGKADAVRSFQKD--G 792 (924)
Q Consensus 723 G~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~----gi~----~v~a~~~P~~K~~~V~~lq~~--g 792 (924)
|++.-.+.+=|++.++|++|+++|++++.+|--...+...+++++ |++ .++..- ......++++ +
T Consensus 17 Gvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~-----~at~~~l~~~~~~ 91 (269)
T COG0647 17 GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG-----DATADYLAKQKPG 91 (269)
T ss_pred CceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH-----HHHHHHHHhhCCC
Confidence 667788899999999999999999999999988777777555543 332 233211 1223334433 3
Q ss_pred CEEEEEcCCcCCHHHHhcCCceEEecCChHHHHHhcCEEEecCC
Q 002427 793 SIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNS 836 (924)
Q Consensus 793 ~~v~~vGDg~nD~~al~~A~vgia~~~~~~~a~~~ad~vl~~~~ 836 (924)
.+|.++|.+ .+...++.+++-+.-.... ...|+|+...|
T Consensus 92 ~kv~viG~~-~l~~~l~~~G~~~~~~~~~----~~~d~Vv~g~d 130 (269)
T COG0647 92 KKVYVIGEE-GLKEELEGAGFELVDEEEP----ARVDAVVVGLD 130 (269)
T ss_pred CEEEEECCc-chHHHHHhCCcEEeccCCC----CcccEEEEecC
Confidence 689999954 5667888888776664222 11677776543
No 241
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=52.75 E-value=28 Score=34.40 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=41.9
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecCCE-------------------EEEEECCCCCChHhHHHHHHhc
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQNK-------------------ADVVFDPDLVKDEDIKNAIEDA 107 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~~ 107 (924)
++|=|.+|....+++||.++.+=+..+. +.|.||+..++.+++.+..-+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 6899999999999999999988775553 7789999999999988766443
No 242
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.37 E-value=53 Score=35.63 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=35.8
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCC-cCCHH---HHhcCCceEEecC----ChHHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDG-INDSP---ALAAADVGMAIGA----GTDIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg-~nD~~---al~~A~vgia~~~----~~~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|+++|-+ .-=.| .|..++..+.+-+ ..+.+...||+++.-
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 45566655555555442 248999999944 33333 3455666665542 233444578988853
No 243
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.09 E-value=72 Score=34.39 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=37.4
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcC----CHHHHh--cCCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIN----DSPALA--AADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~n----D~~al~--~A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -+|+.|+.+|-|.. =+.+|. .|.|-++-....+ .....||+++.-
T Consensus 137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSA 208 (286)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEEC
Confidence 45566766555555543 24899999999851 122333 3556666553333 345679999864
No 244
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=48.92 E-value=25 Score=32.82 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=28.9
Q ss_pred CCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 002427 729 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 761 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~ 761 (924)
+++.+++.+++++|++.|++++++||-......
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 568899999999999999999999998776544
No 245
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.53 E-value=1.1e+02 Score=33.13 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.3
Q ss_pred eccChhhHHHHHHHHhh--CCCEEEEEcCCcCCHH----HHh------cCCceEEecCCh--HHHHHhcCEEEec
Q 002427 774 ADVMPAGKADAVRSFQK--DGSIVAMVGDGINDSP----ALA------AADVGMAIGAGT--DIAIEAADYVLMR 834 (924)
Q Consensus 774 a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD~~----al~------~A~vgia~~~~~--~~a~~~ad~vl~~ 834 (924)
.-+||.-=.++++...- .|+.|+.+|.+..=-- +|. .|.|-++..... ......||+++.-
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 34666655555554431 4899999999855221 332 466777765433 3345789999964
No 246
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.14 E-value=1e+02 Score=33.18 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=38.4
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcCC----HHHHhc------CCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIND----SPALAA------ADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~nD----~~al~~------A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|..+|.+..= +-+|.. |.|-++.....+ .....||+++.-
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVA 211 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 45677765555555543 248999999998442 223333 667777654333 345789999864
No 247
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.78 E-value=27 Score=32.03 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=30.1
Q ss_pred CcHhHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCc
Q 002427 731 VKREAAVVVEGLLKMGVR-PVMVTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~-v~mlTGD~~~ta~~iA~~~gi~ 770 (924)
..+.+.+.++++.+.|++ +|+.+|.....+...|++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 456789999999999996 8899999899999999998884
No 248
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=45.63 E-value=26 Score=41.02 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=40.9
Q ss_pred cchHhhHHhhhhcCCCceeEEEecCCC------------------eEEEeeCCCCCChhhHHHhh
Q 002427 140 AACVNSVEGILSNFKGVRQFRFDKISG------------------ELEVLFDPEALSSRSLVDGI 186 (924)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~v~vn~~~~------------------~~~V~yd~~~~~~~~i~~~I 186 (924)
+.|=|-+|+.+++++||.++++-++.+ .+.|.|||..++.++|++..
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f 269 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYY 269 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHH
Confidence 368999999999999999999876654 38899999999999999864
No 249
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.23 E-value=1.1e+02 Score=32.13 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceEE---eccChhhHHHHHHHHhhCCCEEEEEcCCcCC----
Q 002427 736 AVVVEGLLKMGVRPVMVTGDNWRTAHAVARE----IGIQDVM---ADVMPAGKADAVRSFQKDGSIVAMVGDGIND---- 804 (924)
Q Consensus 736 ~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~----~gi~~v~---a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD---- 804 (924)
.+.++...+.|.++.++ |..+.++...++. .|+.-+. .-..|++..++++.+.+.+..+.+||=|.-=
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 34455556667888877 6666655544443 3553211 1234777778999999999999999999542
Q ss_pred ---HHHHhcCCceEEecCChHHH---HHhcCEEEecCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002427 805 ---SPALAAADVGMAIGAGTDIA---IEAADYVLMRNSLEDVIIAIDLSRKTFARIRLNYIF 860 (924)
Q Consensus 805 ---~~al~~A~vgia~~~~~~~a---~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~n~~~ 860 (924)
.-..-...|.+++|..-|.. ..-|.-.+.+-+|..+.+++.+=|+..+.+. |-.|
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~~-~~~F 234 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLR-LLRY 234 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHHH-HHHH
Confidence 11222345556666422211 1123333445578888888888777544443 4443
No 250
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=45.17 E-value=43 Score=35.08 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=64.7
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEec-----------------cChhhHHH-H---
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ----DVMAD-----------------VMPAGKAD-A--- 784 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~----~v~a~-----------------~~P~~K~~-~--- 784 (924)
.+|+++.+.++.|++.+|.+.+.|+-=-.....+-++.|.. +|.++ .-+-.|-+ .
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 48999999999999999999999976556666666666653 11111 01122322 1
Q ss_pred ---HHHHhhCCCEEEEEcCCcCCHHHHhcC---CceEEec--CC-h----HHHHHhcCEEEecCChhHHHHHH
Q 002427 785 ---VRSFQKDGSIVAMVGDGINDSPALAAA---DVGMAIG--AG-T----DIAIEAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 785 ---V~~lq~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-~----~~a~~~ad~vl~~~~l~~l~~~i 844 (924)
-+.++. -..|..+||..-|+.|-.-. +.-+.+| +. . +.-+++=||||.+|.--.++..|
T Consensus 170 ~~~~~~~~~-R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 170 SPYFKQLKK-RTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp HHHHHCTTT---EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred chHHHHhcc-CCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 122222 34699999999999987554 4445555 32 2 34556789999998755555443
No 251
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=45.06 E-value=1e+02 Score=32.20 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=51.3
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEc---CCCHHHHH-HHHHHcCCceEEeccChhhH----HHHHHHHhh--CCC
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVMVT---GDNWRTAH-AVAREIGIQDVMADVMPAGK----ADAVRSFQK--DGS 793 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~mlT---GD~~~ta~-~iA~~~gi~~v~a~~~P~~K----~~~V~~lq~--~g~ 793 (924)
++.-.+.+=|++.++|+.|++.|++++++| |-...... .+.+..|+. ++|++= ....+.|++ .+.
T Consensus 8 vL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~-----~~~~~iits~~~~~~~l~~~~~~~ 82 (236)
T TIGR01460 8 VLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD-----VSPDQIITSGSVTKDLLRQRFEGE 82 (236)
T ss_pred ccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC-----CCHHHeeeHHHHHHHHHHHhCCCC
Confidence 334456666799999999999999999998 54444333 344436763 233321 122233433 356
Q ss_pred EEEEEcCCcCCHHHHhcCCc
Q 002427 794 IVAMVGDGINDSPALAAADV 813 (924)
Q Consensus 794 ~v~~vGDg~nD~~al~~A~v 813 (924)
+|..+|.. .....++.+++
T Consensus 83 ~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 83 KVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred EEEEECCH-HHHHHHHHcCC
Confidence 79999964 35556665543
No 252
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=44.93 E-value=2.5e+02 Score=33.35 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCCc-eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcC
Q 002427 734 EAAVVVEGLLKMGVRPVMVTGDNW-RTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGIN 803 (924)
Q Consensus 734 ~~~~~I~~L~~~gi~v~mlTGD~~-~ta~~iA~~~gi~-~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~n 803 (924)
|+-.++...++.+-++.+++=.+. ..+..++.-+++. ..+.-.+++|=...|+.++++|.. +.|||++-
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~ 165 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIE-AVVGAGLI 165 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH
Confidence 566777777877778877776553 4666788888886 567778889999999999999974 57798744
No 253
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=44.46 E-value=81 Score=33.82 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=58.9
Q ss_pred EEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---HcCCceEEeccChhhHHHHHHHHhhC---CCEEE
Q 002427 723 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR---EIGIQDVMADVMPAGKADAVRSFQKD---GSIVA 796 (924)
Q Consensus 723 G~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~---~~gi~~v~a~~~P~~K~~~V~~lq~~---g~~v~ 796 (924)
|++...+.+=|++.++++.|++.|-++..+|-..-.+-+..++ ++|+.++--+--+.-=..+...|++. +++|-
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vy 110 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVY 110 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEE
Confidence 6778889999999999999999998899999887777666654 56776432222222223445555433 34555
Q ss_pred EEc-CCcCCHHHHhcCCce
Q 002427 797 MVG-DGINDSPALAAADVG 814 (924)
Q Consensus 797 ~vG-Dg~nD~~al~~A~vg 814 (924)
.+| +|+++- |+.|++-
T Consensus 111 vig~~gi~~e--L~~aG~~ 127 (306)
T KOG2882|consen 111 VIGEEGIREE--LDEAGFE 127 (306)
T ss_pred EecchhhhHH--HHHcCce
Confidence 544 566653 4556543
No 254
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.20 E-value=1.1e+02 Score=28.70 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred CeEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEe-ccChhhHHHHHHH
Q 002427 719 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMA-DVMPAGKADAVRS 787 (924)
Q Consensus 719 ~~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~~ta~~iA~~~gi~~v~a-~~~P~~K~~~V~~ 787 (924)
-.++|+-++...-.+..+++++.|+++|. ++ +|+=|-.+..-..--+++|++.+|. +.++++.++.+..
T Consensus 54 adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 35677778888888999999999999987 44 4554444444455678899998765 5666666665554
No 255
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=43.86 E-value=69 Score=26.09 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=40.3
Q ss_pred EEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchh
Q 002427 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (924)
Q Consensus 49 ~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (924)
++.+.|+.|+...-.+.+++.+++. .+...+..+.. .+.+.+....+..||...
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~-~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDP-AAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESST-THHHHHHHHHHHHTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCc-cHHHHHHHHHHHCCCEEE
Confidence 5678999999999999999999743 23445555544 467889999999999753
No 256
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=43.84 E-value=1.2e+02 Score=31.83 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=59.3
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCC-HHHHHHHHH-HcCCceEEe-
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDN-WRTAHAVAR-EIGIQDVMA- 774 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~m-lTGD~-~~ta~~iA~-~~gi~~v~a- 774 (924)
+++.+++.+.|...+.+ -|-+=++..+.++.+|+.|++.++ ++-.. .+..+.+++ ..|..-+.+
T Consensus 94 ~~fi~~~~~aG~~giii------------pDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 94 ERFLRDAKEAGVDGLII------------PDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHCCCcEEEE------------CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 44566666666543332 243346888999999999998665 55433 455667777 677643222
Q ss_pred -----ccC--hhhHHHHHHHHhhCCCEEEEEcCCcCCH
Q 002427 775 -----DVM--PAGKADAVRSFQKDGSIVAMVGDGINDS 805 (924)
Q Consensus 775 -----~~~--P~~K~~~V~~lq~~g~~v~~vGDg~nD~ 805 (924)
..+ +.+-.+.|+.+++....-.++|-|+|+.
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~ 199 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTP 199 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCH
Confidence 222 2344466777776545567889999955
No 257
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=42.99 E-value=81 Score=33.99 Aligned_cols=81 Identities=19% Similarity=0.353 Sum_probs=57.3
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEeccChhhH
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGK 781 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA-~~~gi~-----------------------~v~a~~~P~~K 781 (924)
.+-|.+|. .+.|+++|+.|.++.++|--....+...+ ...|++ ++.+|+-|++.
T Consensus 162 ~vLdRpRH--~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~mqgRL~~~~~ 239 (319)
T PRK09479 162 VVLDRPRH--EELIAEIREAGARVKLISDGDVAGAIATAFPDTGVDILMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNE 239 (319)
T ss_pred EEEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCCeeEEEEcCcChHHHHHHHHHHhcCceeEEeECCCCH
Confidence 34566666 58999999999999999854455555555 334554 57888888765
Q ss_pred HHHHHHHhhCC----------------CEEEEEcCCcCCHHHHh
Q 002427 782 ADAVRSFQKDG----------------SIVAMVGDGINDSPALA 809 (924)
Q Consensus 782 ~~~V~~lq~~g----------------~~v~~vGDg~nD~~al~ 809 (924)
.+.-+ +++.| ..|.|+.-|+.|...|+
T Consensus 240 ~e~~r-~~~~Gi~D~~kv~~~~dLv~gddv~F~ATGVTdG~lL~ 282 (319)
T PRK09479 240 EERAR-AKKMGITDLDKVLTLDDLVRGDDVIFAATGVTDGDLLK 282 (319)
T ss_pred HHHHH-HHHcCCcChhheeEHHHcccCCCEEEEEeCCCCCCCcC
Confidence 54433 33333 47999999999998886
No 258
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=42.18 E-value=58 Score=29.93 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=41.7
Q ss_pred cCCCcHhHHHHHHHHHHCCCeE---EEEcCCCHHHHHH------HHHHcCCceEE----eccChhhHHHHHHHHhhCC
Q 002427 728 ADPVKREAAVVVEGLLKMGVRP---VMVTGDNWRTAHA------VAREIGIQDVM----ADVMPAGKADAVRSFQKDG 792 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v---~mlTGD~~~ta~~------iA~~~gi~~v~----a~~~P~~K~~~V~~lq~~g 792 (924)
...++++.++-++.|++.|+++ +++.||++....+ .|+++||.-.. ...+.++=.+.|+.|-+..
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3457888999999999998874 5678999886654 47889997433 3446666667777776553
No 259
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.96 E-value=4.5e+02 Score=27.89 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=60.8
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCC-HHHHHHHHHHc-CCceEEe-
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDN-WRTAHAVAREI-GIQDVMA- 774 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~m-lTGD~-~~ta~~iA~~~-gi~~v~a- 774 (924)
+++.++..+.|...+.+ -|-+=++..+.++.+++.|+..+. +|-.. .+..+.+++.. |..-+.+
T Consensus 107 e~f~~~~~~aGvdGvii------------pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~ 174 (258)
T PRK13111 107 ERFAADAAEAGVDGLII------------PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSR 174 (258)
T ss_pred HHHHHHHHHcCCcEEEE------------CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 45556666666543332 254557899999999999998654 77766 45677777765 3321111
Q ss_pred -------ccChhhHHHHHHHHhhCCCEEEEEcCCcCCHH
Q 002427 775 -------DVMPAGKADAVRSFQKDGSIVAMVGDGINDSP 806 (924)
Q Consensus 775 -------~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~ 806 (924)
...|.+=.+.++.+++....-.++|-|+++..
T Consensus 175 ~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e 213 (258)
T PRK13111 175 AGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPE 213 (258)
T ss_pred CCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHH
Confidence 12244555678888876555667899996654
No 260
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.76 E-value=1.6e+02 Score=26.78 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=41.0
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEe
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREIGIQDVMA 774 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~~ta~~iA~~~gi~~v~a 774 (924)
.++|+-...+.--+.+++.++.+|+.+- ++ +++-|-....-...+++.|.+.++.
T Consensus 52 dvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 52 DAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 4667766667777899999999999976 44 6777755544356889999977764
No 261
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=41.71 E-value=4.7e+02 Score=33.86 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=77.5
Q ss_pred eEEEEeCCCCCCCCEEEECCCCcccceEEEEeccee-eecccccCCCcce----eccCCCccccceeeecceEEEEEEEe
Q 002427 376 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPV----LKEINSPVIGGTINLHGVLHIQATKV 450 (924)
Q Consensus 376 ~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~-Vdes~LTGEs~pv----~k~~g~~v~aGt~~~~g~~~~~v~~~ 450 (924)
....+...+..|.|.++++.. .+=+|=-.+.|++. |.-..-.-+..|. .--.|..+..|+...-=..++.=+..
T Consensus 163 Div~l~~Gd~IPaD~~il~~~-~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~ 241 (997)
T TIGR01106 163 DLVEVKGGDRIPADLRIISAQ-GCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVM 241 (997)
T ss_pred CEEEECCCCEEeeeEEEEEcc-CcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchh
Confidence 346778888889999888764 24456555667664 3221110011121 12356777777532211111122222
Q ss_pred cChhHHHHHHHHHHHhhc-cCChhHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHhhcCCCCCcccCCCCccHHHHHHHHh
Q 002427 451 GSDAVLSQIISLVETAQM-SKAPIQKFADFVASIFVPIVVTLALFTWLC-WYVAGVLGAYPEQWLPENGTHFVFALMFSI 528 (924)
Q Consensus 451 g~~t~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 528 (924)
|. +.++.+..+..+. -...++++.+.+..+.+.+.+++.++.++. +.+. ..+..++...+
T Consensus 242 g~---i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~v~v 303 (997)
T TIGR01106 242 GR---IASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYTWL---------------EAVIFLIGIIV 303 (997)
T ss_pred hH---HHhhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---------------HHHHHHHHHHh
Confidence 22 1122222111111 123456667777666555544444443322 1221 12344556667
Q ss_pred hhhhhhcccccchhHHHHHHHHH
Q 002427 529 SVVVIACPCALGLATPTAVMVAT 551 (924)
Q Consensus 529 svlv~~~P~aL~la~p~~l~~~~ 551 (924)
+....+.|..+.++...+.....
T Consensus 304 ~~iP~~L~~~v~i~l~~~~~~m~ 326 (997)
T TIGR01106 304 ANVPEGLLATVTVCLTLTAKRMA 326 (997)
T ss_pred hcCCccchHHHHHHHHHHHHHHH
Confidence 77888888888888887765433
No 262
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=41.49 E-value=1.3e+02 Score=32.22 Aligned_cols=82 Identities=17% Similarity=0.104 Sum_probs=47.0
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHH--------------HHHHHHcCCceE-EeccChhhHHHHHHHHhhCCCEEE
Q 002427 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTA--------------HAVAREIGIQDV-MADVMPAGKADAVRSFQKDGSIVA 796 (924)
Q Consensus 732 r~~~~~~I~~L~~~gi~v~mlTGD~~~ta--------------~~iA~~~gi~~v-~a~~~P~~K~~~V~~lq~~g~~v~ 796 (924)
-+++.++++.|++.|+ ..++|.-..... ..+....|-..+ ...-+|+-=..+.+.+.-....++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 5789999999998887 556664222111 111111122111 112223222234444433456799
Q ss_pred EEcCCc-CCHHHHhcCCce
Q 002427 797 MVGDGI-NDSPALAAADVG 814 (924)
Q Consensus 797 ~vGDg~-nD~~al~~A~vg 814 (924)
||||.. .|..+-+.|++-
T Consensus 224 mIGD~~~tDI~~A~~aGi~ 242 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMT 242 (279)
T ss_pred EECCChHHHHHHHHHcCCc
Confidence 999995 999998888865
No 263
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.47 E-value=2.2e+02 Score=30.16 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=59.0
Q ss_pred hHHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE-EEcCCC-HHHHHHHHHHcC-CceEEe-
Q 002427 699 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV-MVTGDN-WRTAHAVAREIG-IQDVMA- 774 (924)
Q Consensus 699 ~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~-mlTGD~-~~ta~~iA~~~g-i~~v~a- 774 (924)
+++.+++.+.|-..+ .+-|.+-++..+.++.+|+.|++.+ +++-.. .+....+++... ..-+.+
T Consensus 105 e~f~~~~~~aGvdgv------------iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 105 EEFYAKCKEVGVDGV------------LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHHHHcCCCEE------------EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC
Confidence 455666666664433 3346666889999999999999955 666655 345567777764 543222
Q ss_pred ----cc---ChhhHHHHHHHHhhCCCEEEEEcCCcCCH
Q 002427 775 ----DV---MPAGKADAVRSFQKDGSIVAMVGDGINDS 805 (924)
Q Consensus 775 ----~~---~P~~K~~~V~~lq~~g~~v~~vGDg~nD~ 805 (924)
.. .+.+=.+.++.+++.-..-.++|-|+|+.
T Consensus 173 ~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~ 210 (256)
T TIGR00262 173 AGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKP 210 (256)
T ss_pred CCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCH
Confidence 11 22334566666766433346789999844
No 264
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.36 E-value=85 Score=33.78 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=37.0
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHHHh--cCCceEEecCChH--HHHHhcCEEEe
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIND----SPALA--AADVGMAIGAGTD--IAIEAADYVLM 833 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD----~~al~--~A~vgia~~~~~~--~a~~~ad~vl~ 833 (924)
|.-+||.-=.++++..+- .|+.|+.+|-+..= +-+|. .|.|-++-....+ .....||+++.
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEE
Confidence 456777666666665532 58999999998521 22333 3556565543222 23467999885
No 265
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=39.94 E-value=62 Score=31.43 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecCC--------------EEEEEECCCCCChHhHHHHHHh
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQN--------------KADVVFDPDLVKDEDIKNAIED 106 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~~--------------~~~v~~~~~~~~~~~i~~~i~~ 106 (924)
++|=|.+|....+++||.++.+=+..+ .+.|.|||..++.+++.+..-+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999988776442 3678899999999998876644
No 266
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=39.82 E-value=1e+02 Score=39.25 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCeEE----------EEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEE
Q 002427 335 LFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 404 (924)
Q Consensus 335 ~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~ 404 (924)
+++.+.| +..+++.++++++........+ ..+.-++=..+....+..-|..|-|..+++. +.+=+|=-
T Consensus 126 ~i~~~qe-~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l~VDES 203 (903)
T PRK15122 126 LLRFWQE-FRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDLFISQA 203 (903)
T ss_pred HHHHHHH-HHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-CceEEEcc
Confidence 3444444 4455777788877654432221 1111111011134667788888888887763 33455655
Q ss_pred EEeccee-eecccc------------cCCCcce-----eccCCCccccceeeecceEEEEEEEec----------ChhHH
Q 002427 405 VVWGTSY-VNESMV------------TGEAVPV-----LKEINSPVIGGTINLHGVLHIQATKVG----------SDAVL 456 (924)
Q Consensus 405 vl~G~~~-Vdes~L------------TGEs~pv-----~k~~g~~v~aGt~~~~g~~~~~v~~~g----------~~t~~ 456 (924)
.+.|++. |+-... .++..+. ..-.|..+..|+...-=..++.-+..| ..|.+
T Consensus 204 ~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t~l 283 (903)
T PRK15122 204 VLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAF 283 (903)
T ss_pred ccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCCcH
Confidence 5566664 433321 1222111 235677787776432111111111111 12222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcc
Q 002427 457 SQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACP 536 (924)
Q Consensus 457 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P 536 (924)
.+ .-.++.+...+++.++++++++++.+...-|. ..+..++..+++...-+.|
T Consensus 284 ~~----------~l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~-----------------~~l~~aisl~V~~~Pe~Lp 336 (903)
T PRK15122 284 DR----------GVNSVSWLLIRFMLVMVPVVLLINGFTKGDWL-----------------EALLFALAVAVGLTPEMLP 336 (903)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHhhhhhhhccCCHH-----------------HHHHHHHHHHHHHccchHH
Confidence 11 11245667778888888888777654332121 1234456667777777777
Q ss_pred cccchhHHHHHHHHHH
Q 002427 537 CALGLATPTAVMVATG 552 (924)
Q Consensus 537 ~aL~la~p~~l~~~~~ 552 (924)
.+++++...+.....+
T Consensus 337 ~~vt~~La~g~~~mak 352 (903)
T PRK15122 337 MIVSSNLAKGAIAMAR 352 (903)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776654443
No 267
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=39.20 E-value=44 Score=32.45 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-VM 773 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-v~ 773 (924)
.+||++.+.+++|++. +++.+.|.-....|..+.+.++... +|
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F 101 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYF 101 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCee
Confidence 4799999999999965 9999999999999999999999873 44
No 268
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=39.12 E-value=32 Score=44.58 Aligned_cols=142 Identities=15% Similarity=0.261 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEecCCEEE--EEECCCCCChHh----HHHHHHhcc--cchhh
Q 002427 46 RRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKAD--VVFDPDLVKDED----IKNAIEDAG--FEAEI 113 (924)
Q Consensus 46 ~~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~~~~~~--v~~~~~~~~~~~----i~~~i~~~G--y~~~~ 113 (924)
-.++..-+|.+-.. -...+|++++.++|+++++..-..+... ++++.+ .+.++ +.+.+...- .+...
T Consensus 43 i~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~ 121 (1021)
T PF00873_consen 43 ISVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGV 121 (1021)
T ss_dssp EEEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHH
T ss_pred eEEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcccc
Confidence 33455556655433 3467899999999999998887777655 456655 34443 444444432 12111
Q ss_pred hcccCCCCCCCCcceeeeeeeCC----Ccc----cchHhhHHhhhhcCCCceeEEEec-CCCeEEEeeCCCC-----CCh
Q 002427 114 LAESSTSGPKPQGTIVGQYTIGG----MTC----AACVNSVEGILSNFKGVRQFRFDK-ISGELEVLFDPEA-----LSS 179 (924)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~i~g----m~C----~~C~~~ie~~l~~~~GV~~v~vn~-~~~~~~V~yd~~~-----~~~ 179 (924)
+.+..............+.+.+ ++- ....+.++..|+++|||.++++.- ....+.|..||++ ++.
T Consensus 122 -~~p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~ 200 (1021)
T PF00873_consen 122 -EEPQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSL 200 (1021)
T ss_dssp -HHHEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--H
T ss_pred -cCCceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCH
Confidence 1110000000111222233322 222 123467999999999999999864 6688999999975 788
Q ss_pred hhHHHhhhhc
Q 002427 180 RSLVDGIAGR 189 (924)
Q Consensus 180 ~~i~~~I~~~ 189 (924)
.++.+.|++.
T Consensus 201 ~~v~~~l~~~ 210 (1021)
T PF00873_consen 201 SDVAQALQAN 210 (1021)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 269
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=39.07 E-value=4.5e+02 Score=33.78 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.3
Q ss_pred ccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q 002427 518 THFVFALMFSISVVVIACPCALGLATPTAVMVATG 552 (924)
Q Consensus 518 ~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~ 552 (924)
..+..++...++....+.|.++++++..+.....+
T Consensus 325 ~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 325 DHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888888888765554
No 270
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=38.63 E-value=38 Score=28.06 Aligned_cols=55 Identities=29% Similarity=0.421 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCEEEEEcCC-cCCHHHHhcCCce-EEecCC---hHHH---HHhcCEEEecCChhH
Q 002427 783 DAVRSFQKDGSIVAMVGDG-INDSPALAAADVG-MAIGAG---TDIA---IEAADYVLMRNSLED 839 (924)
Q Consensus 783 ~~V~~lq~~g~~v~~vGDg-~nD~~al~~A~vg-ia~~~~---~~~a---~~~ad~vl~~~~l~~ 839 (924)
...+.+.-....+.||||. ..|..+-+++++- |.+.+| .+.. ...+|+|+ ++|..
T Consensus 12 ~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv--~~l~e 74 (75)
T PF13242_consen 12 QALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVV--DDLKE 74 (75)
T ss_dssp HHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEE--SSGGG
T ss_pred HHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEE--CCHHh
Confidence 3444443334569999999 9999999999975 444322 1222 25789988 55653
No 271
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.94 E-value=1.9e+02 Score=31.29 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=36.9
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHHHhc------CCceEEecCCh--HHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIND----SPALAA------ADVGMAIGAGT--DIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD----~~al~~------A~vgia~~~~~--~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++...- .|+.|..+|-+.-= +.+|.. |.|-++..... ......||+++.-
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsA 211 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAA 211 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEc
Confidence 455677665566555432 48999999998431 223432 55666665322 2234579999863
No 272
>PF15584 Imm44: Immunity protein 44
Probab=37.89 E-value=15 Score=31.65 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.9
Q ss_pred CCCEEEECCCCcccceEEE
Q 002427 387 SGDTLKVLPGTKLPADGIV 405 (924)
Q Consensus 387 ~GDii~v~~G~~iP~Dg~v 405 (924)
+.+-.+|+.|++|||||+-
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4556789999999999986
No 273
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=37.83 E-value=3.9e+02 Score=28.05 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=53.1
Q ss_pred cCCCcHhHHHHHHHHHHC---CCeEEEEcCCCHHHHHHHHHHcCCceE-------EeccChhhHHHHHHHHhhCCCEEEE
Q 002427 728 ADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGIQDV-------MADVMPAGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~---gi~v~mlTGD~~~ta~~iA~~~gi~~v-------~a~~~P~~K~~~V~~lq~~g~~v~~ 797 (924)
.+-|-||..++++..+.. |+.++-.+-|++..|+++++- |-.-+ -.+.. -...+.|+.+++.-..-.+
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg~pIGsg~G-i~~~~~I~~I~e~~~vpVI 179 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGQG-LLNPYNLRIIIERADVPVI 179 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCCC-CCCHHHHHHHHHhCCCcEE
Confidence 556789999999999998 999987788999999998876 54433 12221 1225667777765444556
Q ss_pred EcCCcCCHH
Q 002427 798 VGDGINDSP 806 (924)
Q Consensus 798 vGDg~nD~~ 806 (924)
++-|++-..
T Consensus 180 ~egGI~tpe 188 (248)
T cd04728 180 VDAGIGTPS 188 (248)
T ss_pred EeCCCCCHH
Confidence 777766543
No 274
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=37.82 E-value=31 Score=36.19 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=48.0
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC------------ceEEeccChhhH--HHHHHHHhhC-CCEEE
Q 002427 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI------------QDVMADVMPAGK--ADAVRSFQKD-GSIVA 796 (924)
Q Consensus 732 r~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi------------~~v~a~~~P~~K--~~~V~~lq~~-g~~v~ 796 (924)
-++..++++.|++.|++. ++|......+.......|. ..+. .-.|+.. ....+.+... ...+.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~-~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIY-SGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEec-CCCCCHHHHHHHHHHcCCCCcccEE
Confidence 478899999998899986 6676544433322222222 1211 1223221 2333343221 24699
Q ss_pred EEcCC-cCCHHHHhcCCce
Q 002427 797 MVGDG-INDSPALAAADVG 814 (924)
Q Consensus 797 ~vGDg-~nD~~al~~A~vg 814 (924)
||||. .+|..+-+.|++-
T Consensus 218 ~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGID 236 (242)
T ss_pred EECCCcHHHHHHHHHCCCe
Confidence 99999 5999988887764
No 275
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=37.69 E-value=1.9e+02 Score=37.67 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=81.2
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEec---CCEEEEEECCCCCChH----hHHHHHHhcc--cchhh
Q 002427 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALL---QNKADVVFDPDLVKDE----DIKNAIEDAG--FEAEI 113 (924)
Q Consensus 47 ~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~---~~~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~ 113 (924)
.+...-+|.+-.. -...+|+++...+|+++++..-. .....++++.+ .+.+ ++.+.+.... ++...
T Consensus 44 ~V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~ 122 (1049)
T PRK15127 44 TISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEV 122 (1049)
T ss_pred EEEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcc
Confidence 3444555655433 33678899999999999886542 33566777765 3444 3444444332 22110
Q ss_pred hcccCCCCCCCCcceeeeeeeCC----Ccc-cc---hHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCC-----CChh
Q 002427 114 LAESSTSGPKPQGTIVGQYTIGG----MTC-AA---CVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSR 180 (924)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~i~g----m~C-~~---C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~-----~~~~ 180 (924)
+.......+........+.+.+ ++- .- -.+.++..|+++|||.++++.-....+.|..||.+ +++.
T Consensus 123 -~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~ 201 (1049)
T PRK15127 123 -QQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPV 201 (1049)
T ss_pred -cCCCcEEecCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHH
Confidence 0000000001111122233321 111 11 23568999999999999999876778999999975 7789
Q ss_pred hHHHhhhh
Q 002427 181 SLVDGIAG 188 (924)
Q Consensus 181 ~i~~~I~~ 188 (924)
++.+.|+.
T Consensus 202 ~V~~~l~~ 209 (1049)
T PRK15127 202 DVINAIKA 209 (1049)
T ss_pred HHHHHHHH
Confidence 99998874
No 276
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.50 E-value=1.4e+02 Score=32.13 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=36.2
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcC-C---HHHHh--cCCceEEecCCh--HHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIN-D---SPALA--AADVGMAIGAGT--DIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~n-D---~~al~--~A~vgia~~~~~--~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++..+- .|+.|+.+|.+.. - +-+|. .|.|-++-.... ......||+++.-
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEe
Confidence 445666555555554432 4889999999933 1 22333 355666654322 2334689999864
No 277
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=37.48 E-value=1.2e+02 Score=32.57 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=55.6
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH-HcCCc-----------------------eEEeccChhhH
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR-EIGIQ-----------------------DVMADVMPAGK 781 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~-~~gi~-----------------------~v~a~~~P~~K 781 (924)
.+-|.+|. .+.|+++|+.|.++.+++--....+...+. ..|++ ++.+|+-|++.
T Consensus 159 ~vLdRpRH--~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~ 236 (309)
T cd01516 159 VVLDRPRH--AALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNE 236 (309)
T ss_pred EEEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCH
Confidence 34566666 589999999999999998434444544443 35554 47888888765
Q ss_pred HHHHHHHhhC----------------CCEEEEEcCCcCCHHHHh
Q 002427 782 ADAVRSFQKD----------------GSIVAMVGDGINDSPALA 809 (924)
Q Consensus 782 ~~~V~~lq~~----------------g~~v~~vGDg~nD~~al~ 809 (924)
.+.-+. ++. |..|.|+.-|+.|...|+
T Consensus 237 ~e~~r~-~~~Gi~D~~ki~~~ddLv~gd~v~FaATGvTdG~lL~ 279 (309)
T cd01516 237 EERARA-REMGITDPNKILTLDDLVRGDDVVFAATGITDGELLK 279 (309)
T ss_pred HHHHHH-HHcCCCChhheeEHHHcccCCCEEEEEeCCCCCCccC
Confidence 443332 222 456899999999988776
No 278
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.38 E-value=1.5e+02 Score=31.77 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=38.1
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCC-cCCHH---HHh--cCCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDG-INDSP---ALA--AADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg-~nD~~---al~--~A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|..+|.+ .-=-| .|. .|.|-++.....+ .....||+++.-
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~A 202 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSA 202 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEEC
Confidence 45566766555555543 248999999999 33444 443 3556666653322 344679999964
No 279
>PRK15108 biotin synthase; Provisional
Probab=36.75 E-value=3.5e+02 Score=30.16 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHcCCeEEEEEECCeEEEEEEecCC-Cc--HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--
Q 002427 697 HVESFVVELEESARTGILVAYDDNLIGVMGIADP-VK--REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-- 771 (924)
Q Consensus 697 ~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~-lr--~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-- 771 (924)
++.+......+.|.+-+ .+..+.++| .+ +...++++.+|+.|+.+.+--|.-......-=++.|++.
T Consensus 80 EI~~~a~~~~~~G~~~i--------~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 80 QVLESARKAKAAGSTRF--------CMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred HHHHHHHHHHHcCCCEE--------EEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 34444445555565433 222332455 44 678889999999898876544544444444445778872
Q ss_pred ------------EEeccChhhHHHHHHHHhhCCCEEE---EEcCCcCC
Q 002427 772 ------------VMADVMPAGKADAVRSFQKDGSIVA---MVGDGIND 804 (924)
Q Consensus 772 ------------v~a~~~P~~K~~~V~~lq~~g~~v~---~vGDg~nD 804 (924)
++..-+.+++.+.++.+++.|..+. ++|=|-.+
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ 199 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETV 199 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCH
Confidence 3333456788999999998887654 77777554
No 280
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=36.16 E-value=52 Score=32.91 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=40.8
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecCC-------------------EEEEEECCCCCChHhHHHHHHh
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIED 106 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 106 (924)
++|=|.+|....+++||.++.+=+..+ .+.|.||+..++.+++.+..-+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 688899999999999999988876544 3678999999999998877644
No 281
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=35.68 E-value=1.8e+02 Score=36.30 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhhhhcccccchhHHHHHHHHHHH
Q 002427 520 FVFALMFSISVVVIACPCALGLATPTAVMVATGV 553 (924)
Q Consensus 520 ~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~ 553 (924)
+..++...++....+.|.+++++...+.....++
T Consensus 237 ~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~ 270 (755)
T TIGR01647 237 LQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK 270 (755)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 4556777888888999999999888887655544
No 282
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=35.11 E-value=2.1e+02 Score=37.24 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=34.4
Q ss_pred hHHHHHHHhhCCCCeeEEEEEe-cCCEEEEEECCCC-----CChHhHHHHHHhccc
Q 002427 60 CSNSVEGALMGLKGVAKASVAL-LQNKADVVFDPDL-----VKDEDIKNAIEDAGF 109 (924)
Q Consensus 60 C~~~ie~~l~~~~GV~~~~v~~-~~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy 109 (924)
..+.++..|++.+||.++++.= ..++..+..|+.. .+.+++.+++.....
T Consensus 157 ~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~n~ 212 (1021)
T PF00873_consen 157 AEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQANNV 212 (1021)
T ss_dssp HHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHHSC
T ss_pred HHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHhhh
Confidence 4567889999999999988763 4556677777653 677888888876554
No 283
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.92 E-value=20 Score=35.77 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=12.1
Q ss_pred EEecCCCccccCc
Q 002427 576 VIFDKTGTLTQGR 588 (924)
Q Consensus 576 i~fDKTGTLT~~~ 588 (924)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999987
No 284
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=34.69 E-value=1.4e+02 Score=32.45 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=55.7
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEeccChhhH
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGK 781 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA-~~~gi~-----------------------~v~a~~~P~~K 781 (924)
.+-|.+|. .+.|+++|++|.++.+++--....|...| ...|++ ++.+|+-|++.
T Consensus 160 ~vLdRpRH--~~lI~eir~~Gari~Li~DGDV~~ai~~~~~~~~vD~~~GiGGaPEGVlaAaAlkclGG~~q~rL~~~~~ 237 (322)
T PRK12415 160 IVQERERH--QDIIDRVRAKGARVKLFGDGDVGASIATALPGTGIDLFVGIGGAPEGVISAAALKCLGGEMQARLVPMNE 237 (322)
T ss_pred EEEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEECCCCH
Confidence 34566666 58999999999999999843444444444 235554 57888887765
Q ss_pred HHHHHHHhh---------------CCCEEEEEcCCcCCHHHHh
Q 002427 782 ADAVRSFQK---------------DGSIVAMVGDGINDSPALA 809 (924)
Q Consensus 782 ~~~V~~lq~---------------~g~~v~~vGDg~nD~~al~ 809 (924)
.+.-+..+. .|..|.|+.-|+.|...|+
T Consensus 238 ~e~~r~~~~Gi~D~~~v~~~ddlv~gd~v~FaATGvTdG~ll~ 280 (322)
T PRK12415 238 EEEARCREMGLEDPRQLLMLDDLVSGDDAIFSATGVSAGELLD 280 (322)
T ss_pred HHHHHHHHcCCcChhheeEHHHccCCCCEEEEEeCCCCCCCcC
Confidence 443332221 1557899999999998886
No 285
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.28 E-value=1e+02 Score=28.09 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=31.7
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe
Q 002427 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA 774 (924)
Q Consensus 732 r~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a 774 (924)
-+++.++++.+|+.|++++.+|++.+ -...+.+.|+..+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~~~~~ 96 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVPVIII 96 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCcEEEC
Confidence 57889999999999999999998874 344667667655543
No 286
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.20 E-value=4.6e+02 Score=27.50 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEecCCC---cHhHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHc------CCceEEeccChhhHHHHHHHHhhCC
Q 002427 724 VMGIADPV---KREAAVVVEGLLKMGVRPVMVTGD--NWRTAHAVAREI------GIQDVMADVMPAGKADAVRSFQKDG 792 (924)
Q Consensus 724 ~i~l~D~l---r~~~~~~I~~L~~~gi~v~mlTGD--~~~ta~~iA~~~------gi~~v~a~~~P~~K~~~V~~lq~~g 792 (924)
.+.+.|-+ -++..+.++.+++.|+++.++-.. ..+....+++.. ++...+...-+.+-.+.++.+++.-
T Consensus 104 gvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 104 GVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV 183 (244)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc
Q ss_pred -CEEEEEcCCc---CCHHHHhcCCc-eEEecCChHHHHHhcCEEEecCChhHHHHHHHHHHHHHH
Q 002427 793 -SIVAMVGDGI---NDSPALAAADV-GMAIGAGTDIAIEAADYVLMRNSLEDVIIAIDLSRKTFA 852 (924)
Q Consensus 793 -~~v~~vGDg~---nD~~al~~A~v-gia~~~~~~~a~~~ad~vl~~~~l~~l~~~i~~~r~~~~ 852 (924)
.....+|-|+ +|+..+..+++ |+-+|++--...+..| +....+.++.-|...+
T Consensus 184 ~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~-------~~~~~~~~~~~~~~~~ 241 (244)
T PRK13125 184 GNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNG-------VESALNLLKKIRGALD 241 (244)
T ss_pred CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC-------HHHHHHHHHHHHHHhh
No 287
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=33.87 E-value=1.1e+02 Score=29.67 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecCC-------------------EEEEEECCCCCChHhHHHHHHhc
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIEDA 107 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 107 (924)
++|=|..|....+++||.++.+=+..+ .+.|.||+..++.+++.+..-+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 589999999999999999999887544 45788999999988888777443
No 288
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.83 E-value=2.7e+02 Score=30.03 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=37.4
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHHHh--cCCceEEecCCh--HHHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIND----SPALA--AADVGMAIGAGT--DIAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD----~~al~--~A~vgia~~~~~--~~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++...- .|+.|+.+|.|..= +.+|. .|.|-++-.... ......||+++.-
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVA 209 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEc
Confidence 456677666666655432 38999999999631 22333 355666555322 2344679999864
No 289
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.56 E-value=1.5e+02 Score=25.08 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=32.7
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHcCCc
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVM-VTGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~m-lTGD~~~ta~~iA~~~gi~ 770 (924)
++.+.+..++.+.+..+.|++.|+++.+ ..+.+..--..-|++.|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445667888899999999999999877 4555555555555556653
No 290
>PRK04302 triosephosphate isomerase; Provisional
Probab=33.16 E-value=1.8e+02 Score=29.98 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=53.7
Q ss_pred CcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEe-------------ccChhhHHHHHHHHhhC-CCEEE
Q 002427 731 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMA-------------DVMPAGKADAVRSFQKD-GSIVA 796 (924)
Q Consensus 731 lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a-------------~~~P~~K~~~V~~lq~~-g~~v~ 796 (924)
+-++..+.++.+++.|+.+++++|+.. .+..+ .+.+-+-+.. ..+|++-.++++.+++. .....
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~v~~~~-~~~~~-~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pv 176 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVCVNNPE-TSAAA-AALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKV 176 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCHH-HHHHH-hcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEE
Confidence 345688999999999999999999843 34443 3444332221 13477766777777763 23455
Q ss_pred EEcCCcCCHHHHh---cCC-ceEEecC
Q 002427 797 MVGDGINDSPALA---AAD-VGMAIGA 819 (924)
Q Consensus 797 ~vGDg~nD~~al~---~A~-vgia~~~ 819 (924)
..|-|+++....+ +++ =|+.+|+
T Consensus 177 i~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 177 LCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred EEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 6788987665443 232 3455553
No 291
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.06 E-value=4.8e+02 Score=30.99 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCCc-eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhcC
Q 002427 734 EAAVVVEGLLKMGVRPVMVTGDNW-RTAHAVAREIGIQ-DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAA 811 (924)
Q Consensus 734 ~~~~~I~~L~~~gi~v~mlTGD~~-~ta~~iA~~~gi~-~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~A 811 (924)
|.-.++...++.+-++.+++=.+. ..+..++.-++++ ..+.-.++++=...|+.++++|.. +.|||++-
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~-------- 155 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLI-------- 155 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEECChHH--------
Confidence 566777777777777777765444 5677888888886 567778889999999999999974 57798743
Q ss_pred CceEEecCChHHHHHh-cCEEEecCChhHHHHHHHHHHHHHHHH
Q 002427 812 DVGMAIGAGTDIAIEA-ADYVLMRNSLEDVIIAIDLSRKTFARI 854 (924)
Q Consensus 812 ~vgia~~~~~~~a~~~-ad~vl~~~~l~~l~~~i~~~r~~~~~i 854 (924)
.+.|++. -..++..+ ..+|..++..+.+..+..
T Consensus 156 ---------~~~A~~~gl~~ili~s-~esi~~a~~~A~~~~~~~ 189 (526)
T TIGR02329 156 ---------TDLAEQAGLHGVFLYS-ADSVRQAFDDALDVARAT 189 (526)
T ss_pred ---------HHHHHHcCCceEEEec-HHHHHHHHHHHHHHHHHH
Confidence 2233222 23344444 377777777777665533
No 292
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=32.71 E-value=94 Score=25.26 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=37.3
Q ss_pred eeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 131 QYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 131 ~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
.+.+.|+.|+...-.+.+++.+++ ....+.|..|.. ....+|.+..+..|
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~---------~G~~l~v~~d~~-~~~~di~~~~~~~g 51 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELP---------PGEVLEVLVDDP-AAVEDIPRWCEENG 51 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSG---------TT-EEEEEESST-THHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcC---------CCCEEEEEECCc-cHHHHHHHHHHHCC
Confidence 467889999999999999999964 224455665544 45788999999998
No 293
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=32.67 E-value=2.3e+02 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHcCCceEEeccCh---h---hHHHHHHHHhhCCCEEEEEcCCc
Q 002427 756 NWRTAHAVAREIGIQDVMADVMP---A---GKADAVRSFQKDGSIVAMVGDGI 802 (924)
Q Consensus 756 ~~~ta~~iA~~~gi~~v~a~~~P---~---~K~~~V~~lq~~g~~v~~vGDg~ 802 (924)
+.+.++.+|+.+||..+.....+ + +-.+.++.++++|......||-.
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 56788899999999866655433 1 11233333344455555555543
No 294
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.59 E-value=99 Score=33.15 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=37.8
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHHHhc--CCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIND----SPALAA--ADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD----~~al~~--A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++...- .|+.|+.+|.+..= +-+|.. |.|-++-....+ .....||+++.-
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVA 208 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 456777666666665532 58999999998542 234444 445555543322 234579999864
No 295
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=32.53 E-value=2.5e+02 Score=36.53 Aligned_cols=141 Identities=13% Similarity=0.215 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEec---CCEEEEEECCCCCCh----HhHHHHHHhc--ccchh
Q 002427 46 RRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALL---QNKADVVFDPDLVKD----EDIKNAIEDA--GFEAE 112 (924)
Q Consensus 46 ~~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~---~~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~ 112 (924)
-.+...-+|.+-.. -...+|++++..+|+++++..-. .....+.++++. +. .++.+.+... ..+..
T Consensus 43 i~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~ 121 (1044)
T TIGR00915 43 VTVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQE 121 (1044)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCc
Confidence 33445556655433 33567888999999998776432 345556665552 33 3344444432 12211
Q ss_pred hhcccCCCCCCCCcceeeeeeeCC----Ccc----cchHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCC-----CCh
Q 002427 113 ILAESSTSGPKPQGTIVGQYTIGG----MTC----AACVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSS 179 (924)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~i~g----m~C----~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~-----~~~ 179 (924)
. +................+.+.+ .+- ..-.+.++..|+++|||.++++.-....+.|..||++ ++.
T Consensus 122 ~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~ 200 (1044)
T TIGR00915 122 V-QRQGVRVEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTP 200 (1044)
T ss_pred c-cCCCcEEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCH
Confidence 0 0000000001111122233322 121 1123578999999999999999877788999999875 788
Q ss_pred hhHHHhhhh
Q 002427 180 RSLVDGIAG 188 (924)
Q Consensus 180 ~~i~~~I~~ 188 (924)
.++.+.|+.
T Consensus 201 ~dV~~~i~~ 209 (1044)
T TIGR00915 201 ADVISAIQA 209 (1044)
T ss_pred HHHHHHHHH
Confidence 999998876
No 296
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=32.49 E-value=1.9e+02 Score=29.81 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCH-----HHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCCEEEE
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNW-----RTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~-----~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~ 797 (924)
++..+++.++++.|++ .+++||+. ....++++++|+ .+++-+--.+|.++++.+.+.|-....
T Consensus 73 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl-~~~~PLw~~~~~el~~~~~~~G~~~~i 140 (218)
T TIGR03679 73 EDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGL-KVFAPLWGRDQEEYLRELVERGFRFII 140 (218)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCC-eEEeehhcCCHHHHHHHHHHCCCEEEE
Confidence 3466778888777877 57788875 456688899998 566666668899999999999875543
No 297
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=32.34 E-value=1.9e+02 Score=37.52 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=81.0
Q ss_pred eeEEEEEeCCCCChhhH----HHHHHHhhCCCCeeEEEEEecCCE--EEEEECCCCCCh----HhHHHHHHhc--ccchh
Q 002427 45 MRRIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDA--GFEAE 112 (924)
Q Consensus 45 ~~~~~~~I~gm~C~~C~----~~ie~~l~~~~GV~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~ 112 (924)
.-.+...-+|.+-.... ..+|++++..+|+++++..-..+. ..++++.+ .+. .++.+.+... .++..
T Consensus 44 ~v~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~-~d~~~a~~~v~~~v~~~~~~LP~~ 122 (1025)
T PRK10614 44 VIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD-RDINGAARDVQAAINAAQSLLPSG 122 (1025)
T ss_pred eEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCc
Confidence 34455566676655544 667999999999999876544444 44556554 233 3344444332 12111
Q ss_pred hhcccCCCCCCCCcceeeeeeeCC--Cccc-c---hHhhHHhhhhcCCCceeEEEecC-CCeEEEeeCCCC-----CChh
Q 002427 113 ILAESSTSGPKPQGTIVGQYTIGG--MTCA-A---CVNSVEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSR 180 (924)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~i~g--m~C~-~---C~~~ie~~l~~~~GV~~v~vn~~-~~~~~V~yd~~~-----~~~~ 180 (924)
....+..............+.+.+ ++-. - -.+.++..|+++|||.++++.-. ...+.|..||++ ++.+
T Consensus 123 ~~~~p~~~~~~~~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~ 202 (1025)
T PRK10614 123 MPSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLD 202 (1025)
T ss_pred cCCCCEEEecCCCccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHH
Confidence 000000000001111122233322 1111 1 23679999999999999998643 467999999875 6788
Q ss_pred hHHHhhhhc
Q 002427 181 SLVDGIAGR 189 (924)
Q Consensus 181 ~i~~~I~~~ 189 (924)
++.+.|+..
T Consensus 203 dV~~al~~~ 211 (1025)
T PRK10614 203 DVRQAISNA 211 (1025)
T ss_pred HHHHHHHHh
Confidence 999888764
No 298
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=32.24 E-value=1.5e+02 Score=34.05 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChh--hH---HHHHHHHhhCCCE
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA--GK---ADAVRSFQKDGSI 794 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~--~K---~~~V~~lq~~g~~ 794 (924)
+...+.=++|++.|++..+..||....-..++++.++..|++...++ ++ ..+.+.+++.|-.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 34455566788899999999999999999999999999999875543 33 2344445655544
No 299
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=32.03 E-value=2.5e+02 Score=25.40 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=45.2
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChh-hHHHHHHHHhhCCC
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPA-GKADAVRSFQKDGS 793 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~-~K~~~V~~lq~~g~ 793 (924)
++.+.|.-|++..+.++.|.+.|+++. .|+ .||..+.+ .|+.--...--++ ...++...++++|+
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~---gTa~~L~~-~Gi~~~~v~~~~~~g~~~i~~~i~~~g~ 68 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATG---GTSRVLAD-AGIPVRAVSKRHEDGEPTVDAAIAEKGK 68 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECc---HHHHHHHH-cCCceEEEEecCCCCCcHHHHHHhCCCC
Confidence 567889999999999999999999984 776 47777765 7886322222233 34556676665255
No 300
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.19 E-value=6.2e+02 Score=26.62 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred cCCCcHhHHHHHHHHHHC---CCeEEEEcCCCHHHHHHHHHHcCCceE-------EeccChhhHHHHHHHHhhCCCEEEE
Q 002427 728 ADPVKREAAVVVEGLLKM---GVRPVMVTGDNWRTAHAVAREIGIQDV-------MADVMPAGKADAVRSFQKDGSIVAM 797 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~---gi~v~mlTGD~~~ta~~iA~~~gi~~v-------~a~~~P~~K~~~V~~lq~~g~~v~~ 797 (924)
.+-+-||..++++..+.. |+.++=.+-|++.+|+++++- |-.-+ -.+....+ .+.++.+++.-..-.+
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~~~vpVI 179 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-GCAAVMPLGAPIGSGLGLLN-PYNLRIIIEQADVPVI 179 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCCCCCC-HHHHHHHHHhcCCeEE
Confidence 455689999999999998 999986777889999988765 54432 11211112 4557777665334456
Q ss_pred EcCCcCCH
Q 002427 798 VGDGINDS 805 (924)
Q Consensus 798 vGDg~nD~ 805 (924)
++-|+.-.
T Consensus 180 veaGI~tp 187 (250)
T PRK00208 180 VDAGIGTP 187 (250)
T ss_pred EeCCCCCH
Confidence 66666544
No 301
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=31.10 E-value=3.6e+02 Score=34.31 Aligned_cols=194 Identities=16% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEE----------EEEecCCCceeeEEEEeCCCCCCCCEEEECCCC
Q 002427 328 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 397 (924)
Q Consensus 328 ~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~ 397 (924)
+++++-.+++.+.|.+++ |+.+.++++....+...+ ..+.-++=..+....+..-+.+|-|..+++ |+
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~ 173 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-AR 173 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cC
Confidence 344455568888888886 888889888766544433 111111111113466778888888888876 44
Q ss_pred cccceEEEEeccee-eeccccc--CCCcce-----eccCCCccccceeeecceEEEEEEEec----------ChhHHHHH
Q 002427 398 KLPADGIVVWGTSY-VNESMVT--GEAVPV-----LKEINSPVIGGTINLHGVLHIQATKVG----------SDAVLSQI 459 (924)
Q Consensus 398 ~iP~Dg~vl~G~~~-Vdes~LT--GEs~pv-----~k~~g~~v~aGt~~~~g~~~~~v~~~g----------~~t~~~~i 459 (924)
-+=+|=-.+.|++. |+-..-+ .+..|. .-..|..+..|....-=..++.-+..| ..|.+.+.
T Consensus 174 ~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~t~lq~~ 253 (867)
T TIGR01524 174 DLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATERRGQTAFDKG 253 (867)
T ss_pred ceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhCCCCCCcHHHH
Confidence 45667666777764 3322110 011111 124688888776432111111111111 12222211
Q ss_pred HHHHHHhhccCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhccccc
Q 002427 460 ISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCAL 539 (924)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL 539 (924)
. .++.+....+..++.++++++..+...-|. ..+..++..+++....+.|.++
T Consensus 254 ~----------~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~~al~l~v~~iP~~Lp~~v 306 (867)
T TIGR01524 254 V----------KSVSKLLIRFMLVMVPVVLMINGLMKGDWL-----------------EAFLFALAVAVGLTPEMLPMIV 306 (867)
T ss_pred H----------HHHHHHHHHHHHHHHHHheehHHHhcCCHH-----------------HHHHHHHHHHHHhCcchHHHHH
Confidence 1 112333344444444444433322111121 1244556667777877888888
Q ss_pred chhHHHHHHHH
Q 002427 540 GLATPTAVMVA 550 (924)
Q Consensus 540 ~la~p~~l~~~ 550 (924)
+++...+....
T Consensus 307 t~~la~g~~~m 317 (867)
T TIGR01524 307 SSNLAKGAINM 317 (867)
T ss_pred HHHHHHHHHHH
Confidence 88888776443
No 302
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=31.02 E-value=7e+02 Score=26.86 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=69.1
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHHCCCeEE--------EEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCC
Q 002427 721 LIGVMGIADPVKREAAVVVEGLLKMGVRPV--------MVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDG 792 (924)
Q Consensus 721 ~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~--------mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g 792 (924)
-++++.=.=-.+++..+.++.|++..-... -.|-+++..+..+|+++.+.-|.+.-....-.++.+..++.|
T Consensus 156 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~ 235 (281)
T PF02401_consen 156 KVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHG 235 (281)
T ss_dssp CEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCT
T ss_pred eEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhC
Confidence 355555566677888999999998766554 347778889999999988877777666666667888888888
Q ss_pred CEEEEEcCCcCCH--HHHhcC-CceEEecCCh
Q 002427 793 SIVAMVGDGINDS--PALAAA-DVGMAIGAGT 821 (924)
Q Consensus 793 ~~v~~vGDg~nD~--~al~~A-~vgia~~~~~ 821 (924)
..+-.|.+- .|. ..|+.. .|||.-|.+|
T Consensus 236 ~~t~~Ie~~-~el~~~~l~~~~~VGItaGAST 266 (281)
T PF02401_consen 236 KPTYHIETA-DELDPEWLKGVKKVGITAGAST 266 (281)
T ss_dssp TCEEEESSG-GG--HHHHTT-SEEEEEE-TTS
T ss_pred CCEEEeCCc-cccCHhHhCCCCEEEEEccCCC
Confidence 778777664 454 456666 6888888544
No 303
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=30.68 E-value=1.7e+02 Score=31.61 Aligned_cols=82 Identities=10% Similarity=0.182 Sum_probs=54.6
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEeccChhhH
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPAGK 781 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA-~~~gi~-----------------------~v~a~~~P~~K 781 (924)
.+-|++|. .+.|+++|++|.++.+++--....+...| ...|++ ++.+|+-|.+.
T Consensus 159 ~vLdRpRH--~~lI~eiR~~GarI~Li~DGDVa~ai~~~~~~s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgRL~~~~~ 236 (321)
T PRK12388 159 VTLDKPRL--SAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISACAVKALGGDMQAELIDFCQ 236 (321)
T ss_pred EEEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEEccCcc
Confidence 34566666 58999999999999999843444444444 235554 57888877661
Q ss_pred ------------HHHHHHHhhC---------------CCEEEEEcCCcCCHHHHh
Q 002427 782 ------------ADAVRSFQKD---------------GSIVAMVGDGINDSPALA 809 (924)
Q Consensus 782 ------------~~~V~~lq~~---------------g~~v~~vGDg~nD~~al~ 809 (924)
.+-.+.+++. |..|.|+.-|+.|...|+
T Consensus 237 ~~g~~~~~~~~~~~e~~r~~~~GiD~~kv~~~ddLv~gddv~FaATGVTdG~lL~ 291 (321)
T PRK12388 237 AKGDYTENRQIAEQERKRCKAMGVDVNRVYSLDELVRGNDILFSATGVTGGELVN 291 (321)
T ss_pred cccccccccccCHHHHHHHHHcCCChhhEeEHHHccCCCCEEEEEeCCCCCCccC
Confidence 2223333332 567899999999988876
No 304
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.61 E-value=2.1e+02 Score=29.85 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHH----------HHHHHHcCCceE-----EeccChhhHHHHHHHHhhCCCEEE
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNWRTA----------HAVAREIGIQDV-----MADVMPAGKADAVRSFQKDGSIVA 796 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~~ta----------~~iA~~~gi~~v-----~a~~~P~~K~~~V~~lq~~g~~v~ 796 (924)
+-.++-|+.+|+.||.+ .||+..... ..-|+++|++.| +-.+.+++|.++|+..++.|-+|.
T Consensus 41 ~~l~eki~la~~~~V~v--~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKV--YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHHHHHcCCeE--eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 35788899999988774 588633222 236788888643 567889999999999999887654
No 305
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.43 E-value=1.1e+02 Score=32.90 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=36.9
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcCC----HHHHhc--CCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIND----SPALAA--ADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~nD----~~al~~--A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|..+|.+..= +.+|.. |.|-++-....+ .....||+++.-
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEc
Confidence 45567766556655543 248999999998442 223433 455555543322 344679999864
No 306
>PRK09579 multidrug efflux protein; Reviewed
Probab=30.32 E-value=3.6e+02 Score=35.01 Aligned_cols=140 Identities=9% Similarity=0.139 Sum_probs=77.5
Q ss_pred EEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEecCCEEE--EEECCCCCChHh----HHHHHHhcc--cchhhhc
Q 002427 48 IQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKAD--VVFDPDLVKDED----IKNAIEDAG--FEAEILA 115 (924)
Q Consensus 48 ~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~~~~~~--v~~~~~~~~~~~----i~~~i~~~G--y~~~~~~ 115 (924)
+...-+|.+-.- -...+|++++..+|+++++..-..+... ++++.+ .+.++ +.+.+...- .+.. .+
T Consensus 47 V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~v~~~v~~v~~~LP~~-~~ 124 (1017)
T PRK09579 47 VTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIG-ADSDRLFTELLAKANEVKNQLPQD-AE 124 (1017)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CCHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 444445554332 3467899999999999888766666554 466655 34433 344443221 1110 00
Q ss_pred ccCCCCCCCCcceeeeeeeCC--Cccc---c-hHhhHHhhhhcCCCceeEEEe-cCCCeEEEeeCCCC-----CChhhHH
Q 002427 116 ESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILSNFKGVRQFRFD-KISGELEVLFDPEA-----LSSRSLV 183 (924)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~vn-~~~~~~~V~yd~~~-----~~~~~i~ 183 (924)
.+..............+.+.+ .+-. . -.+.++..|++++||.++++. .....+.|..||++ ++.+++.
T Consensus 125 ~P~i~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~ 204 (1017)
T PRK09579 125 DPVLSKEAADASALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVT 204 (1017)
T ss_pred CCeEEeCCCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHH
Confidence 000000000001112233322 2111 1 235689999999999999864 44457888888864 7889999
Q ss_pred Hhhhhc
Q 002427 184 DGIAGR 189 (924)
Q Consensus 184 ~~I~~~ 189 (924)
+.|+..
T Consensus 205 ~al~~~ 210 (1017)
T PRK09579 205 QAVRRY 210 (1017)
T ss_pred HHHHHh
Confidence 998663
No 307
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.30 E-value=4.6e+02 Score=24.57 Aligned_cols=101 Identities=22% Similarity=0.214 Sum_probs=62.9
Q ss_pred EEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCCceE-Eecc---ChhhHHHHHHHHhhCCC--
Q 002427 721 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNW-RTAHAVAREIGIQDV-MADV---MPAGKADAVRSFQKDGS-- 793 (924)
Q Consensus 721 ~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~-~ta~~iA~~~gi~~v-~a~~---~P~~K~~~V~~lq~~g~-- 793 (924)
++|.+.. |--..++.=+-..|+.+|++|+-+-+|.. +...+-|++-+-+-+ .+.+ +.+.=.++++.|+++|.
T Consensus 6 ~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 6 LVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD 84 (132)
T ss_pred EEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC
Confidence 3455554 66566666666778889999988887743 444455555554322 2222 23334577888888764
Q ss_pred EEEEEcC--CcCCHHHHhcCCceEEecCChH
Q 002427 794 IVAMVGD--GINDSPALAAADVGMAIGAGTD 822 (924)
Q Consensus 794 ~v~~vGD--g~nD~~al~~A~vgia~~~~~~ 822 (924)
...++|- ...|...+++++|-=.++.|++
T Consensus 85 i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred CEEEEeCCCChHhHHHHHHCCCCEEECCCCC
Confidence 4567773 3446788888888766665554
No 308
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.20 E-value=1.1e+02 Score=33.06 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=37.8
Q ss_pred EeccChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHHHh------cCCceEEecCChH--HHHHhcCEEEe
Q 002427 773 MADVMPAGKADAVRSFQK--DGSIVAMVGDGIND----SPALA------AADVGMAIGAGTD--IAIEAADYVLM 833 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq~--~g~~v~~vGDg~nD----~~al~------~A~vgia~~~~~~--~a~~~ad~vl~ 833 (924)
|.-+||.-=.++++..+- .|+.|+.+|-+..= +-+|. .|.|-++.....+ .....||+++.
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 136 FKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 445777666666665532 58999999998542 22343 3556666653322 34568999997
No 309
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.70 E-value=3.2e+02 Score=23.67 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=48.8
Q ss_pred CeeEEEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEE-----ecCCEEEEEECCCCCChHhHHHHHHhcccchhhh
Q 002427 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVA-----LLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (924)
Q Consensus 44 ~~~~~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (924)
+.+++.+.+---+-..-.-.+-+.+.+++||..++.. ..+....+.......+-+++.+.+++.|...+..
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 4455555555555444455667788999998776654 3455556666666688999999999999766543
No 310
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=28.76 E-value=2.3e+02 Score=31.03 Aligned_cols=85 Identities=22% Similarity=0.288 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCe--E-EEEcCCCHH---HHHHHHHHcCCce---------EEeccChhhHHHHHH----HHhh--CCCE
Q 002427 736 AVVVEGLLKMGVR--P-VMVTGDNWR---TAHAVAREIGIQD---------VMADVMPAGKADAVR----SFQK--DGSI 794 (924)
Q Consensus 736 ~~~I~~L~~~gi~--v-~mlTGD~~~---ta~~iA~~~gi~~---------v~a~~~P~~K~~~V~----~lq~--~g~~ 794 (924)
.-.|-.|-..||- + +=||+|..+ +|..|-+.+|+.+ -|+|+. -|=..+++ .|++ ..-+
T Consensus 213 aigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~-~dl~~~~~~ve~~l~~~~~~l~ 291 (346)
T TIGR00612 213 SAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTG-FDVEKVVRRVQEALFHLKTPLK 291 (346)
T ss_pred HHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcC-CCHHHHHHHHHHHHhcCCCCCE
Confidence 3446677777772 3 348898765 5667888888853 233443 22222232 2332 2568
Q ss_pred EEEEcCCcCCHHHHhcCCceEEec-CCh
Q 002427 795 VAMVGDGINDSPALAAADVGMAIG-AGT 821 (924)
Q Consensus 795 v~~vGDg~nD~~al~~A~vgia~~-~~~ 821 (924)
|+.+|-=+|-..--+.||+||+.| .+.
T Consensus 292 VAVMGCvVNGPGEak~ADiGIaggg~g~ 319 (346)
T TIGR00612 292 VAVMGCVVNGPGEAKHADIGISGGGTGS 319 (346)
T ss_pred EEEECceecCCchhhccCeeeecCCCCc
Confidence 999999999999999999999988 553
No 311
>COG4996 Predicted phosphatase [General function prediction only]
Probab=28.43 E-value=1.1e+02 Score=28.55 Aligned_cols=44 Identities=7% Similarity=-0.047 Sum_probs=40.5
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVM 773 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~ 773 (924)
.++++++++++.+|+.|.-+-..|=.-+..|...-+.+++.++|
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yF 84 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYF 84 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhE
Confidence 37899999999999999999999999999999999999998755
No 312
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=28.26 E-value=1.5e+02 Score=33.17 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=62.2
Q ss_pred CeEEEEEE-CCeEEEEEEecCCCcHhHHHHHHHHHHCCCe--EEEEcC-CCHHHHHHHHHHcCCc--eEEeccChhhHHH
Q 002427 710 RTGILVAY-DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTG-DNWRTAHAVAREIGIQ--DVMADVMPAGKAD 783 (924)
Q Consensus 710 ~~~i~va~-~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~--v~mlTG-D~~~ta~~iA~~~gi~--~v~a~~~P~~K~~ 783 (924)
...+++-+ +++..|-|-+ .++...+.+|-+.+-+ ++-.|+ .+...+..-|+++||. -|.-..+|..|.
T Consensus 80 g~~vyLK~E~lQpsgSFK~-----RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~ki- 153 (457)
T KOG1250|consen 80 GMPVYLKREDLQPSGSFKI-----RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKI- 153 (457)
T ss_pred CCceEEEehhcccccceeh-----hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHH-
Confidence 34455544 4566666554 3778888888777644 445555 4455666778999997 478889999995
Q ss_pred HHHHHhhCCCEEEEEcCCcCCHHHH
Q 002427 784 AVRSFQKDGSIVAMVGDGINDSPAL 808 (924)
Q Consensus 784 ~V~~lq~~g~~v~~vGDg~nD~~al 808 (924)
+.+|+.|..|...|+...-+-++
T Consensus 154 --q~~~nlGA~Vil~G~~~deAk~~ 176 (457)
T KOG1250|consen 154 --QRCRNLGATVILSGEDWDEAKAF 176 (457)
T ss_pred --HHHhccCCEEEEecccHHHHHHH
Confidence 45666788999999876655544
No 313
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=28.08 E-value=2.7e+02 Score=30.37 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=78.9
Q ss_pred HHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEecc----Ch
Q 002427 703 VELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADV----MP 778 (924)
Q Consensus 703 ~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~----~P 778 (924)
....+.|.+++.+..+.. .+ .-.+..+++++-|.+.|..++++=.....++..+|+...+.-|=+.. -|
T Consensus 65 ~A~~~LGg~~i~l~~~~~-----~~--~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HP 137 (305)
T PRK00856 65 LAAKRLGADVINFSASTS-----SV--SKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHP 137 (305)
T ss_pred HHHHHcCCcEEEeCCCcc-----cC--CCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCc
Confidence 334566778877754332 11 23678889999999998898888888888999999998887666643 24
Q ss_pred hhHH-HHHHHHhh----CCCEEEEEcCCcCC------HHHHhcCCceEEec--CC--------------hHHHHHhcCEE
Q 002427 779 AGKA-DAVRSFQK----DGSIVAMVGDGIND------SPALAAADVGMAIG--AG--------------TDIAIEAADYV 831 (924)
Q Consensus 779 ~~K~-~~V~~lq~----~g~~v~~vGDg~nD------~~al~~A~vgia~~--~~--------------~~~a~~~ad~v 831 (924)
-|=+ ++....+. +|.+|++|||+.|. +.+++.-++-+.+. .+ .+.|.+.||+|
T Consensus 138 tQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvv 217 (305)
T PRK00856 138 TQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVV 217 (305)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEE
Confidence 4432 22222222 36799999999532 22333333333332 11 13567788988
Q ss_pred Eec
Q 002427 832 LMR 834 (924)
Q Consensus 832 l~~ 834 (924)
.++
T Consensus 218 yt~ 220 (305)
T PRK00856 218 MML 220 (305)
T ss_pred EEC
Confidence 874
No 314
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=27.75 E-value=3.4e+02 Score=27.95 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHCCCeEE-EEc------------CCCHHHHHHHHHHcCCceEEeccC---hhhH---HHHHHHHhhCCCE
Q 002427 734 EAAVVVEGLLKMGVRPV-MVT------------GDNWRTAHAVAREIGIQDVMADVM---PAGK---ADAVRSFQKDGSI 794 (924)
Q Consensus 734 ~~~~~I~~L~~~gi~v~-mlT------------GD~~~ta~~iA~~~gi~~v~a~~~---P~~K---~~~V~~lq~~g~~ 794 (924)
|+.-++..+++.|.++. ++| +.....++.+|+.+||......++ +..- ...++.++++|..
T Consensus 9 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~ 88 (218)
T TIGR03679 9 DSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVE 88 (218)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCC
Confidence 33445555666676653 333 446778899999999986666554 3222 2334444555766
Q ss_pred EEEEcCCcC
Q 002427 795 VAMVGDGIN 803 (924)
Q Consensus 795 v~~vGDg~n 803 (924)
....||=.-
T Consensus 89 ~vv~G~i~s 97 (218)
T TIGR03679 89 GIVTGAIAS 97 (218)
T ss_pred EEEECCccc
Confidence 666666443
No 315
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.69 E-value=1e+02 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=36.0
Q ss_pred CChHhHHHHHHhcccchhhhcccCCCCCCCCcceeeeeeeCCCcccchHhhHHhhhhcCCCceeEEEecCCCeEEEee
Q 002427 95 VKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRFDKISGELEVLF 172 (924)
Q Consensus 95 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~y 172 (924)
.+++.|.+.++++|+..+.- | +..+.+.||++.+++++.++++.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~e---------------------G----------D~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEE---------------------G----------DRIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeec---------------------c----------cEEEEecCCceEEEEecccceEEEec
Confidence 46888999999999865431 1 12345679999999999999998875
No 316
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=27.16 E-value=3.5e+02 Score=29.75 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=47.2
Q ss_pred CCCcHhHHHHHHHHHHCCCeE----EEEcC--CCHHHHHHHHHH---cCCceE------------EeccChhhHHHHHHH
Q 002427 729 DPVKREAAVVVEGLLKMGVRP----VMVTG--DNWRTAHAVARE---IGIQDV------------MADVMPAGKADAVRS 787 (924)
Q Consensus 729 D~lr~~~~~~I~~L~~~gi~v----~mlTG--D~~~ta~~iA~~---~gi~~v------------~a~~~P~~K~~~V~~ 787 (924)
+++-+++.++|+.|+++|+.+ +++.| ||..+-..+.+. +|+..+ +.++++++=.++++.
T Consensus 216 ~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~ 295 (321)
T TIGR03821 216 NEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAE 295 (321)
T ss_pred HhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHH
Confidence 456688999999999999875 55677 888887776654 477643 245777777888888
Q ss_pred HhhC
Q 002427 788 FQKD 791 (924)
Q Consensus 788 lq~~ 791 (924)
+++.
T Consensus 296 l~~~ 299 (321)
T TIGR03821 296 LLAR 299 (321)
T ss_pred HHHh
Confidence 8764
No 317
>PTZ00445 p36-lilke protein; Provisional
Probab=27.05 E-value=1.4e+02 Score=30.64 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=50.0
Q ss_pred CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHc-CCceEEeccChhhHHHHHHHHhhCCCEEEEEcCC
Q 002427 730 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REI-GIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDG 801 (924)
Q Consensus 730 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA---~~~-gi~~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg 801 (924)
..++.+...++.|++.||+++..-=|+-..+.+-+ +.. ....+...++|+=|. +++.+++.|-.|+.|--.
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~-~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKI-LGKRLKNSNIKISVVTFS 100 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHH-HHHHHHHCCCeEEEEEcc
Confidence 35677888899999999999998667665553222 111 233566778998886 788888888877766543
No 318
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=26.93 E-value=1.3e+02 Score=29.07 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEec-------------------CCEEEEEECCCCCChHhHHHHHHh
Q 002427 58 AACSNSVEGALMGLKGVAKASVALL-------------------QNKADVVFDPDLVKDEDIKNAIED 106 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~-------------------~~~~~v~~~~~~~~~~~i~~~i~~ 106 (924)
++|=|.+|....+++||.++.+=+. .+.+.|.|||..++.+++.+..-+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998887653 334568899999998888876643
No 319
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.92 E-value=3.6e+02 Score=28.49 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcCCceEE
Q 002427 737 VVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVM 773 (924)
Q Consensus 737 ~~I~~L~~~gi~v~mlTG-D~~~ta~~iA~~~gi~~v~ 773 (924)
+.++.+.+.++.-+++++ +.......-+++.|+.-|+
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~ 84 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVV 84 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEE
Confidence 456666666776555544 3222334445666665443
No 320
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=26.89 E-value=2.7e+02 Score=32.59 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccCh--hhH---HHHHHHHhhCCCEE
Q 002427 733 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMP--AGK---ADAVRSFQKDGSIV 795 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P--~~K---~~~V~~lq~~g~~v 795 (924)
+...+.=+.|++.|++.++..|+...+-..++++.++..|++...+ ..+ .++.+.++..|-.|
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 3445555678889999999999999999999999999999976553 222 34555666666543
No 321
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=26.73 E-value=2.5e+02 Score=30.36 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=53.5
Q ss_pred EecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEeccChh--
Q 002427 726 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA-REIGIQ-----------------------DVMADVMPA-- 779 (924)
Q Consensus 726 ~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA-~~~gi~-----------------------~v~a~~~P~-- 779 (924)
.+-|.+|. .+.|+++|++|.++.+++--....+...+ ...|++ ++.+|+-|+
T Consensus 159 ~vLdRpRH--~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgrL~~~~~ 236 (321)
T TIGR00330 159 TILAKPRH--DAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAAIRALGGDMQGRLLPRHD 236 (321)
T ss_pred EEEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhcCceeEEEEccccc
Confidence 34566665 58999999999999999843444444434 335554 477888777
Q ss_pred -----------hHHHHHHHHhh--------------CCCEEEEEcCCcCCHHHHh
Q 002427 780 -----------GKADAVRSFQK--------------DGSIVAMVGDGINDSPALA 809 (924)
Q Consensus 780 -----------~K~~~V~~lq~--------------~g~~v~~vGDg~nD~~al~ 809 (924)
+..+.-+..+- .|..|.|+.-|+.|...|+
T Consensus 237 ~~~~~~~~~~~~~~e~~r~~~~GiD~~kv~~~ddLv~gddv~FaATGVTdG~lL~ 291 (321)
T TIGR00330 237 VKGDNEENRRIAEQEIARCKAMGVDVNKVLRLEDLVRGDNVIFSATGITKGDLLK 291 (321)
T ss_pred cccccccccCCCHHHHHHHHHcCCChhhEeEHHHccCCCCEEEEEeCCCCCCCcC
Confidence 33222221111 2567999999999998886
No 322
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=26.71 E-value=1e+02 Score=34.01 Aligned_cols=55 Identities=33% Similarity=0.532 Sum_probs=44.2
Q ss_pred cCCCHHHHHHHHHHcCCce--EEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHHhc
Q 002427 753 TGDNWRTAHAVAREIGIQD--VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAA 810 (924)
Q Consensus 753 TGD~~~ta~~iA~~~gi~~--v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al~~ 810 (924)
+|.|.+-...-|+.+||.- +.-..+|.+|.+-++.+ |..|...||.-+|+.+.+.
T Consensus 82 aGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~---GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 82 AGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGY---GAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred CCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhc---CCEEEEECCCHHHHHHHHH
Confidence 5788888888899999974 66789999997776654 7788899998888876543
No 323
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.59 E-value=5.5e+02 Score=25.63 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHCCCeEEE--EcCCCHHHHHHHHHHcCCceEEec--cChhh-----HHHHHHHHhhCCCEEEEEcCCcC
Q 002427 733 REAAVVVEGLLKMGVRPVM--VTGDNWRTAHAVAREIGIQDVMAD--VMPAG-----KADAVRSFQKDGSIVAMVGDGIN 803 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~m--lTGD~~~ta~~iA~~~gi~~v~a~--~~P~~-----K~~~V~~lq~~g~~v~~vGDg~n 803 (924)
....++++.+++.|+++.+ ++=+++..+.. +.+.|.+-+... ..+.. -.+.++.+++....-.+++-|+|
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 3567899999999999875 78788887777 666777654332 11121 13445555542233344555776
No 324
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.59 E-value=2.7e+02 Score=34.31 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=59.0
Q ss_pred cCCCcHhH-HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccChhhHHHHHHHHhhCCC-EEEEEcC---Cc
Q 002427 728 ADPVKREA-AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGS-IVAMVGD---GI 802 (924)
Q Consensus 728 ~D~lr~~~-~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq~~g~-~v~~vGD---g~ 802 (924)
.+|-+-++ ...++.-.+.|-++++.+ |+...+..+++.+|..-++.++++.+..++++.+++.|. .++++-+ --
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~-~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFS-DNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEe-CCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 34444333 234444344677888887 567789999999998888999999999999999986544 4544433 22
Q ss_pred CCHHHHhcCCceEEec
Q 002427 803 NDSPALAAADVGMAIG 818 (924)
Q Consensus 803 nD~~al~~A~vgia~~ 818 (924)
=|.| .|++.|-+.
T Consensus 556 IDlP---~a~vvI~~s 568 (732)
T TIGR00603 556 IDLP---EANVLIQIS 568 (732)
T ss_pred cCCC---CCCEEEEeC
Confidence 3443 567776653
No 325
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.39 E-value=3.6e+02 Score=29.66 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEE---EEcC---CCHHHHHH---HHHHcCCc
Q 002427 700 SFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV---MVTG---DNWRTAHA---VAREIGIQ 770 (924)
Q Consensus 700 ~~~~~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~---mlTG---D~~~ta~~---iA~~~gi~ 770 (924)
+..+.+.+.|.. +.+..+..- -.++.+++.++++.|+++|+.+. +++. |+..+-.. .+.++|+.
T Consensus 188 ell~~L~~~g~~-v~i~l~~~h------~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 188 ALIAALKTSGKT-VYVALHANH------ARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHHcCCc-EEEEecCCC------hhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 344556666644 455554421 12346899999999999999873 3444 77665544 34567886
Q ss_pred eE------------EeccChhhHHHHHHHHhhC
Q 002427 771 DV------------MADVMPAGKADAVRSFQKD 791 (924)
Q Consensus 771 ~v------------~a~~~P~~K~~~V~~lq~~ 791 (924)
.+ +.++++++-.++++.+++.
T Consensus 261 pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~ 293 (321)
T TIGR03822 261 PYYLHHLDLAPGTAHFRVTIEEGQALVRALRGR 293 (321)
T ss_pred eEEEEecCCCCCcccccCcHHHHHHHHHHHHHh
Confidence 42 2356677778888888765
No 326
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.37 E-value=3.4e+02 Score=27.00 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-----CCc--eEEeccChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHH
Q 002427 736 AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREI-----GIQ--DVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPAL 808 (924)
Q Consensus 736 ~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~-----gi~--~v~a~~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al 808 (924)
.+.++.+.+.|.++.++ |-.+.++...++.+ |+. ..+.-.+|++-.++++.+.+.+..+++||=|.-==..+
T Consensus 38 ~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 34555566667777777 55666655555544 232 11233457777788999998888899999996532222
Q ss_pred -------hcCCceEEecCChHHH---HHhcCEEEecCChhHHHHHHHHHHHHHHH
Q 002427 809 -------AAADVGMAIGAGTDIA---IEAADYVLMRNSLEDVIIAIDLSRKTFAR 853 (924)
Q Consensus 809 -------~~A~vgia~~~~~~~a---~~~ad~vl~~~~l~~l~~~i~~~r~~~~~ 853 (924)
....+.+++|.+-|.. +.-|.-.+.+-+|..+.+++.+=|+..+.
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R~ 171 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKRM 171 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHHh
Confidence 1233555555422221 11222233345677777777776665443
No 327
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.33 E-value=1.7e+02 Score=31.55 Aligned_cols=64 Identities=30% Similarity=0.325 Sum_probs=44.3
Q ss_pred cCCCcHhHHHHHHHHHHCCCeE---EEEcCCCHHHHHH------HHHHcCCceEEecc----ChhhHHHHHHHHhhC
Q 002427 728 ADPVKREAAVVVEGLLKMGVRP---VMVTGDNWRTAHA------VAREIGIQDVMADV----MPAGKADAVRSFQKD 791 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~gi~v---~mlTGD~~~ta~~------iA~~~gi~~v~a~~----~P~~K~~~V~~lq~~ 791 (924)
.++++++.++-++.|++.|++. +++-||++....+ .|+++||.....+. +.++=.+.|+.|-+.
T Consensus 10 A~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 10 AAKVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567889999999999888763 5678999886554 56789997544443 444555566665443
No 328
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.29 E-value=1.4e+02 Score=32.24 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=37.5
Q ss_pred EeccChhhHHHHHHHHh--hCCCEEEEEcCCcCC----HHHHh--cCCceEEecCChH--HHHHhcCEEEec
Q 002427 773 MADVMPAGKADAVRSFQ--KDGSIVAMVGDGIND----SPALA--AADVGMAIGAGTD--IAIEAADYVLMR 834 (924)
Q Consensus 773 ~a~~~P~~K~~~V~~lq--~~g~~v~~vGDg~nD----~~al~--~A~vgia~~~~~~--~a~~~ad~vl~~ 834 (924)
|.-+||.-=.++++... -.|+.|+.+|.+.-= +.+|. .|.|-++.....+ .....||+++.-
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVA 208 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 45677766666666553 248899999998432 22332 3556665543222 345679998853
No 329
>PLN02389 biotin synthase
Probab=26.23 E-value=3.2e+02 Score=30.88 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred hhhhHHHHHHHHcCCeEEEEEECCeEEEEEEecC--CCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--
Q 002427 696 DHVESFVVELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-- 771 (924)
Q Consensus 696 ~~~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~-- 771 (924)
+++.+...+..+.|.+.+.+...++ ...+ ...+...+.++.+|+.|+.+..-.|--......--++.|++.
T Consensus 119 EeIl~~a~~~~~~G~~~~~ivts~r-----g~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 119 DDVLEAAKRAKEAGSTRFCMGAAWR-----DTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccc-----CCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 3444555555666665544321110 0122 235688889999998899887777866655555556778863
Q ss_pred ------------EEeccChhhHHHHHHHHhhCCCEE---EEEcCCcC
Q 002427 772 ------------VMADVMPAGKADAVRSFQKDGSIV---AMVGDGIN 803 (924)
Q Consensus 772 ------------v~a~~~P~~K~~~V~~lq~~g~~v---~~vGDg~n 803 (924)
+...-+++++.+.++.+++.|-.| +++|=|-.
T Consensus 194 ~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt 240 (379)
T PLN02389 194 HNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEA 240 (379)
T ss_pred eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCC
Confidence 334457789999999999998654 45665543
No 330
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=26.02 E-value=5.6e+02 Score=30.12 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=67.7
Q ss_pred hhHHHHHHHHcCCeEEE-EEECCeEEEEEEecCCCcHhHHHHHHHHH--HCCCeEEEEcCCCH---HHHHHHHHHcCCce
Q 002427 698 VESFVVELEESARTGIL-VAYDDNLIGVMGIADPVKREAAVVVEGLL--KMGVRPVMVTGDNW---RTAHAVAREIGIQD 771 (924)
Q Consensus 698 ~~~~~~~~~~~g~~~i~-va~~~~~lG~i~l~D~lr~~~~~~I~~L~--~~gi~v~mlTGD~~---~ta~~iA~~~gi~~ 771 (924)
+.+..+.+.+.+...+. +..+++++|++...|-++..... ..++ +..+.|-..-|.++ +.+..+. +.|++-
T Consensus 180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p--~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~-~ag~d~ 256 (495)
T PTZ00314 180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP--NASLDSNGQLLVGAAISTRPEDIERAAALI-EAGVDV 256 (495)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc--hhhhccCCCEEEEEEECCCHHHHHHHHHHH-HCCCCE
Confidence 34455566666555443 44568899999999988764421 2233 22456655666554 3444443 357776
Q ss_pred EEecc---ChhhHHHHHHHHhhC-CCEEEEEcCCcC--CHHHHhcCCc
Q 002427 772 VMADV---MPAGKADAVRSFQKD-GSIVAMVGDGIN--DSPALAAADV 813 (924)
Q Consensus 772 v~a~~---~P~~K~~~V~~lq~~-g~~v~~vGDg~n--D~~al~~A~v 813 (924)
+.-.. ....-.+.|+.+++. .....+.|+..+ |+..+..|++
T Consensus 257 i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 257 LVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 66444 233345788888876 345567788774 7777776654
No 331
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=25.82 E-value=9.9e+02 Score=27.99 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=81.3
Q ss_pred eEEEEeCCCCCCCCEEEECCCCcccceEEEEeccee-eecccccCCCcceeccCCCccccceeeecceEEEEEEEecChh
Q 002427 376 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDA 454 (924)
Q Consensus 376 ~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~~-Vdes~LTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t 454 (924)
....+...|..|-|.++++. ..=+|--.+.|++. +.-. .|+. ...|..++.|+....=.....- ....
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~---s~~~ 124 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPN---TFGG 124 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccc---cHHH
Confidence 35677888888999888865 45556666667764 3322 1443 2467788888865431111110 1112
Q ss_pred HHHHHHHHHHHhhcc-CChhHHHH-HHHHHhHHHHHHHHHHHHHHHHH----HHhhcCCCCCcccCCCCccHHHHHHHHh
Q 002427 455 VLSQIISLVETAQMS-KAPIQKFA-DFVASIFVPIVVTLALFTWLCWY----VAGVLGAYPEQWLPENGTHFVFALMFSI 528 (924)
Q Consensus 455 ~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i 528 (924)
.++++.+.-.+.+.. .....++. ..+..+.+.+.++..++.+..+. +. ..+..++...+
T Consensus 125 ~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vl~ 189 (499)
T TIGR01494 125 KIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIF---------------KIFLRALILLV 189 (499)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH---------------HHHHHHHHHHH
Confidence 222332222222222 22334444 34444333333333333322211 11 13566777888
Q ss_pred hhhhhhcccccchhHHHHHHHHHH
Q 002427 529 SVVVIACPCALGLATPTAVMVATG 552 (924)
Q Consensus 529 svlv~~~P~aL~la~p~~l~~~~~ 552 (924)
.....+.|.+++++.-.+.....+
T Consensus 190 ~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 190 IAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHH
Confidence 888899999999998888776655
No 332
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=25.74 E-value=2.8e+02 Score=28.93 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=16.8
Q ss_pred HHHhhCCCEEEEEcCCcCCHHHHh
Q 002427 786 RSFQKDGSIVAMVGDGINDSPALA 809 (924)
Q Consensus 786 ~~lq~~g~~v~~vGDg~nD~~al~ 809 (924)
+..++.-..|+.|||..+|-....
T Consensus 187 ~~v~k~~~iVm~vGDNl~DF~d~~ 210 (274)
T COG2503 187 QAVEKDYKIVMLVGDNLDDFGDNA 210 (274)
T ss_pred HHHhhccceeeEecCchhhhcchh
Confidence 334445568999999999975443
No 333
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=1.3e+02 Score=29.63 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=40.5
Q ss_pred hhhHHHHHHHhhCCCCeeEEEEEecCC-------------------EEEEEECCCCCChHhHHHHHHhc
Q 002427 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIEDA 107 (924)
Q Consensus 58 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 107 (924)
++|=|-+|+...++|||.++.+-++.+ .+.|.||+..++.+++.+..-+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 689999999999999999988765433 45688999999999988877444
No 334
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.35 E-value=4.5e+02 Score=27.15 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=50.3
Q ss_pred HHHHHHcCCeEEEEEECC---------eEEEEEEecCCCcHhHHHHHHHHHHCCCe----EEEEcCCCHH--HHHHHHHH
Q 002427 702 VVELEESARTGILVAYDD---------NLIGVMGIADPVKREAAVVVEGLLKMGVR----PVMVTGDNWR--TAHAVARE 766 (924)
Q Consensus 702 ~~~~~~~g~~~i~va~~~---------~~lG~i~l~D~lr~~~~~~I~~L~~~gi~----v~mlTGD~~~--ta~~iA~~ 766 (924)
.+.+.++|+.++.+..|. ++......-|..-+++ |+++|+. ++..||++.. .+..+|++
T Consensus 16 a~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~------L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 16 ARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDV------LEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred HHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHH------HHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 455667777777765532 2444555566666654 8888885 6778998655 44456655
Q ss_pred -cCCceEEeccChhhHHHHH
Q 002427 767 -IGIQDVMADVMPAGKADAV 785 (924)
Q Consensus 767 -~gi~~v~a~~~P~~K~~~V 785 (924)
+|+.++.+|..-.+-.++.
T Consensus 90 ~~gv~~viar~~~~~~~~~~ 109 (225)
T COG0569 90 EFGVPRVIARARNPEHEKVL 109 (225)
T ss_pred hcCCCcEEEEecCHHHHHHH
Confidence 8999999887655443333
No 335
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.22 E-value=2.6e+02 Score=36.33 Aligned_cols=141 Identities=14% Similarity=0.231 Sum_probs=78.4
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEecCC--EEEEEECCCCCChH----hHHHHHHhcc--cchhhh
Q 002427 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVKDE----DIKNAIEDAG--FEAEIL 114 (924)
Q Consensus 47 ~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~~ 114 (924)
.+...-+|.+-.. -...+|++++..+|+++++..-..+ ...++++.+ .+.+ ++.+.+.... .+...
T Consensus 44 ~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~~- 121 (1032)
T PRK09577 44 SIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPEPV- 121 (1032)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCccc-
Confidence 3444555665433 3357889999999999876654444 445566655 3333 3444444321 21110
Q ss_pred cccCCCCCCCCcceeeeeeeCC----Cccc---c-hHhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCC-----CChhh
Q 002427 115 AESSTSGPKPQGTIVGQYTIGG----MTCA---A-CVNSVEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRS 181 (924)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~i~g----m~C~---~-C~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~-----~~~~~ 181 (924)
+.......+........+.+.+ .+-. . -.+.++..|+++|||.+|+++-....+.|..||.+ ++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~ 201 (1032)
T PRK09577 122 RRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASD 201 (1032)
T ss_pred ccCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHH
Confidence 0000000000000111222222 1111 1 23678999999999999999876677788888865 77899
Q ss_pred HHHhhhhc
Q 002427 182 LVDGIAGR 189 (924)
Q Consensus 182 i~~~I~~~ 189 (924)
+.+.|++.
T Consensus 202 V~~~l~~~ 209 (1032)
T PRK09577 202 IASAVRAH 209 (1032)
T ss_pred HHHHHHHh
Confidence 99988764
No 336
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=25.17 E-value=1.4e+03 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCh---hhHHHHHHHhhCCCCeeEEEEEecCCEE--EEEECCC-----CCChHhHHHHHHhc
Q 002427 47 RIQVGVTGMTCA---ACSNSVEGALMGLKGVAKASVALLQNKA--DVVFDPD-----LVKDEDIKNAIEDA 107 (924)
Q Consensus 47 ~~~~~I~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~~~~~--~v~~~~~-----~~~~~~i~~~i~~~ 107 (924)
.+.+.+.|-+-. .-+..+++.+++.||+.++..++..+.. .+..|+. ..++.++.+.++..
T Consensus 660 ~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 660 SYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 355666665422 3467889999999999999988766644 4444433 25667777777643
No 337
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.00 E-value=4.2e+02 Score=22.74 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=6.5
Q ss_pred hHHHHHHHHH-hcCCCe
Q 002427 347 KTSDAIKKLV-ELAPAT 362 (924)
Q Consensus 347 k~~~~l~~l~-~~~~~~ 362 (924)
|.++..+++. ++.|..
T Consensus 26 K~~k~~~~m~~~L~~Gd 42 (84)
T TIGR00739 26 KRRKAHKKLIESLKKGD 42 (84)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 3334444433 344443
No 338
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=24.97 E-value=1.8e+02 Score=36.92 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=55.6
Q ss_pred hhHHHHHHHHcCCeEEEEEECCeEEEEEEecC-----------CCcHhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHH
Q 002427 698 VESFVVELEESARTGILVAYDDNLIGVMGIAD-----------PVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVAR 765 (924)
Q Consensus 698 ~~~~~~~~~~~g~~~i~va~~~~~lG~i~l~D-----------~lr~~~~~~I~~L~~~-gi~v~mlTGD~~~ta~~iA~ 765 (924)
.......+.....+.+++.+||++..+..--+ .+-++..++++.|.+. +-.|+++||.........-.
T Consensus 579 ~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 579 PEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred HHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 45566677777789999999999987643322 2447888999999876 67899999999999888877
Q ss_pred HcCC
Q 002427 766 EIGI 769 (924)
Q Consensus 766 ~~gi 769 (924)
.+++
T Consensus 659 ~~~L 662 (934)
T PLN03064 659 EFDM 662 (934)
T ss_pred CCCc
Confidence 6654
No 339
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=24.73 E-value=1.9e+02 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=37.2
Q ss_pred EEEEecC---CCcHhHHHHHHHHHHCCCeEEEE-cCCCHHHHHHHHHHcCCc
Q 002427 723 GVMGIAD---PVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREIGIQ 770 (924)
Q Consensus 723 G~i~l~D---~lr~~~~~~I~~L~~~gi~v~ml-TGD~~~ta~~iA~~~gi~ 770 (924)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|+.
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4566677 77788899999999999998776 556666666777777874
No 340
>PRK08508 biotin synthase; Provisional
Probab=24.48 E-value=6.7e+02 Score=26.88 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHHHcCCce--------------EEeccChhhHHHHHHHHhhCCCEE-
Q 002427 733 REAAVVVEGLLKMG--VRPVMVTGDNWRTAHAVAREIGIQD--------------VMADVMPAGKADAVRSFQKDGSIV- 795 (924)
Q Consensus 733 ~~~~~~I~~L~~~g--i~v~mlTGD~~~ta~~iA~~~gi~~--------------v~a~~~P~~K~~~V~~lq~~g~~v- 795 (924)
+-..++++.+|+.+ +.++...|........--++.|++. +....+++++.+.++..++.|-.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 45566777777654 4444455655444444445566653 222355688889999998887543
Q ss_pred --EEEcCCcCC
Q 002427 796 --AMVGDGIND 804 (924)
Q Consensus 796 --~~vGDg~nD 804 (924)
+++|-|-++
T Consensus 155 sg~I~GlGEt~ 165 (279)
T PRK08508 155 SGGIFGLGESW 165 (279)
T ss_pred ceeEEecCCCH
Confidence 567766543
No 341
>PRK11018 hypothetical protein; Provisional
Probab=24.36 E-value=2.6e+02 Score=23.52 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=41.6
Q ss_pred EEEEeCCCCChhhHHHHHHHhhCCCCeeEEEEEecCCEEEEEECCCCCChHhHHHHHHhcccchh
Q 002427 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (924)
Q Consensus 48 ~~~~I~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (924)
..+...|..|+...-+..+++++++. .+...|..|.. .+...+....+..||...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVL 63 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEE
Confidence 46889999999999999999998752 23344544443 466788888899999864
No 342
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=24.22 E-value=1.2e+02 Score=30.76 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHcCCeEEEEEEC--------------CeEEEEEEecCCCcHhHHHHHHHHHHCCCe--E-EEEcCCCHHHHHHHHHHc
Q 002427 705 LEESARTGILVAYD--------------DNLIGVMGIADPVKREAAVVVEGLLKMGVR--P-VMVTGDNWRTAHAVAREI 767 (924)
Q Consensus 705 ~~~~g~~~i~va~~--------------~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~--v-~mlTGD~~~ta~~iA~~~ 767 (924)
+...|++++++..| -.++|+-.....--++.++.++.|++.|.+ + +++-| ...+ ...|+++
T Consensus 108 l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG-~~~~-~~~~~~~ 185 (197)
T TIGR02370 108 LRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGG-APVT-QDWADKI 185 (197)
T ss_pred HHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEC-hhcC-HHHHHHh
Confidence 44556666665442 357888888888899999999999999875 4 45555 4433 4678888
Q ss_pred CCceE
Q 002427 768 GIQDV 772 (924)
Q Consensus 768 gi~~v 772 (924)
|-+-+
T Consensus 186 gad~~ 190 (197)
T TIGR02370 186 GADVY 190 (197)
T ss_pred CCcEE
Confidence 87543
No 343
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.12 E-value=6.6e+02 Score=32.20 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCeE----EEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccc
Q 002427 326 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA----LLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 401 (924)
Q Consensus 326 ~~~~li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~----~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~ 401 (924)
..++++...++| +.+.+...++.++++++.......- ++...-++=.++....+...|.+|-|..+++..+ .=+
T Consensus 109 I~~~i~~n~~~g-~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l~V 186 (917)
T COG0474 109 ILLVVVINALLG-FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-LEV 186 (917)
T ss_pred ehHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-ceE
Confidence 345555566666 5555555678888887766553322 2221111100113477889999999999999887 556
Q ss_pred eEEEEeccee-eecc--cccCCCccee---c---cCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhccCCh
Q 002427 402 DGIVVWGTSY-VNES--MVTGEAVPVL---K---EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 472 (924)
Q Consensus 402 Dg~vl~G~~~-Vdes--~LTGEs~pv~---k---~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 472 (924)
|=-.+.|++. |+-. ..+.|..|.. + -.|..|..|+-..--..++.-|..|+-+..-.-.+ .....-...
T Consensus 187 dEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~--~~~t~l~~~ 264 (917)
T COG0474 187 DESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKK--EVKTPLQRK 264 (917)
T ss_pred EcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhcccc--ccCCcHHHH
Confidence 6556667764 2221 1222333332 2 45778888773222222222333333332222111 111111223
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHH
Q 002427 473 IQKFADFVASIFVPIVVTLALFTWLC----WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVM 548 (924)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~ 548 (924)
+.++...+..+.+...++..+..+.. |. ..+..++..+++++..+.|..+.++..++..
T Consensus 265 l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~l~va~IPegLp~~vti~la~g~~ 327 (917)
T COG0474 265 LNKLGKFLLVLALVLGALVFVVGLFRGGNGLL-----------------ESFLTALALAVAAVPEGLPAVVTIALALGAQ 327 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH-----------------HHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 44455555554444444333333332 22 1356778889999999999988888888776
Q ss_pred HHHHH
Q 002427 549 VATGV 553 (924)
Q Consensus 549 ~~~~~ 553 (924)
.-.++
T Consensus 328 ~mak~ 332 (917)
T COG0474 328 RMAKD 332 (917)
T ss_pred HHHhc
Confidence 54444
No 344
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.84 E-value=2.8e+02 Score=25.15 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCH-----H--HHHHHHHHcCCceEE-----eccChhhHHHHHHHHhhC-CCEEEEEcCC
Q 002427 736 AVVVEGLLKMGVRPVMV-TGDNW-----R--TAHAVAREIGIQDVM-----ADVMPAGKADAVRSFQKD-GSIVAMVGDG 801 (924)
Q Consensus 736 ~~~I~~L~~~gi~v~ml-TGD~~-----~--ta~~iA~~~gi~~v~-----a~~~P~~K~~~V~~lq~~-g~~v~~vGDg 801 (924)
++-++.|+++|++.+|. -.|++ . .-...|+++||.-++ ...++++=..+.+.+.+. +...+++.-|
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 46688999999998775 33432 2 234789999997443 456666666777777754 4555666665
No 345
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=23.73 E-value=1.7e+02 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=21.1
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHHH
Q 002427 776 VMPAGKADAVRSFQKDGSIVAMVGDGINDSPAL 808 (924)
Q Consensus 776 ~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~al 808 (924)
+.|-|. +....++.|-.+..||||-|...|=
T Consensus 161 ~a~~D~--lf~~a~~~gi~tigIGDGGNEiGMG 191 (291)
T PF14336_consen 161 VAPLDD--LFLAAKEPGIPTIGIGDGGNEIGMG 191 (291)
T ss_pred cccHHH--HHHHhhcCCCCEEEECCCchhcccC
Confidence 445555 3344445788899999999987543
No 346
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.72 E-value=3.3e+02 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=29.2
Q ss_pred eEEEEEEecCCC-cHhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 002427 720 NLIGVMGIADPV-KREAAVVVEGLLKMGVRPVMVTGDNWRTAH 761 (924)
Q Consensus 720 ~~lG~i~l~D~l-r~~~~~~I~~L~~~gi~v~mlTGD~~~ta~ 761 (924)
.---.+.++-+= +++..++++.|+++|+++..+|. ++....
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~-~~~~~~ 80 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSD-DELAKT 80 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCC-CHHHHH
Confidence 334455566665 78899999999999999887654 444433
No 347
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.51 E-value=3.8e+02 Score=21.64 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=36.1
Q ss_pred CChHhHHHHHHhcccchhhhcccCCCCCCCCcceeeeeeeCCCcccchHhhHHhhhhcCCCceeEEE
Q 002427 95 VKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILSNFKGVRQFRF 161 (924)
Q Consensus 95 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~l~i~gm~C~~C~~~ie~~l~~~~GV~~v~v 161 (924)
.-..++.+.+.+.|-...-..... ...+.....+.++.-+=..--..+-+.|+++|||.+|++
T Consensus 12 g~l~~I~~~la~~~inI~~i~~~~----~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 12 GVLSKVLNTIAQVRGNVLTINQNI----PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred chHHHHHHHHHHcCCCEEEEEeCC----CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 346778888888876654332211 111223344444321112245677788889999998874
No 348
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=23.42 E-value=3.9e+02 Score=34.75 Aligned_cols=143 Identities=15% Similarity=0.216 Sum_probs=81.6
Q ss_pred eeEEEEEeCCCCChh----hHHHHHHHhhCCCCeeEEEEEecCCEE--EEEECCCCCCh----HhHHHHHHhcc--cchh
Q 002427 45 MRRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKA--DVVFDPDLVKD----EDIKNAIEDAG--FEAE 112 (924)
Q Consensus 45 ~~~~~~~I~gm~C~~----C~~~ie~~l~~~~GV~~~~v~~~~~~~--~v~~~~~~~~~----~~i~~~i~~~G--y~~~ 112 (924)
.-.+...-+|.+-.. -...+|++++..+|+++++..-..+.. .++++.+ .+. .++.+.+...- .+..
T Consensus 53 ~v~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g-~d~~~a~~ev~~~i~~~~~~LP~~ 131 (1040)
T PRK10503 53 TIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLT-LPLDVAEQEVQAAINAATNLLPSD 131 (1040)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCCc
Confidence 334556667776555 346789999999999988876555544 4556554 233 33444443321 1111
Q ss_pred hhcccCC-CCCCCCcceeeeeeeCC--Cccc---c-hHhhHHhhhhcCCCceeEEEecC-CCeEEEeeCCCC-----CCh
Q 002427 113 ILAESST-SGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSS 179 (924)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~~~l~i~g--m~C~---~-C~~~ie~~l~~~~GV~~v~vn~~-~~~~~V~yd~~~-----~~~ 179 (924)
. ...+. ............+.+.+ ++-. . -.+.++..|+++|||.+|++.-. ...+.|.+||++ +++
T Consensus 132 ~-~~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~ 210 (1040)
T PRK10503 132 L-PNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTS 210 (1040)
T ss_pred c-CCCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCH
Confidence 0 00000 00001111122333322 1110 1 22578999999999999988744 478999999975 678
Q ss_pred hhHHHhhhhc
Q 002427 180 RSLVDGIAGR 189 (924)
Q Consensus 180 ~~i~~~I~~~ 189 (924)
.++.+.|+..
T Consensus 211 ~~v~~ai~~~ 220 (1040)
T PRK10503 211 ETVRTAITGA 220 (1040)
T ss_pred HHHHHHHHHh
Confidence 8999888653
No 349
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=23.00 E-value=3.7e+02 Score=29.35 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=58.2
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC---hhh
Q 002427 704 ELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM---PAG 780 (924)
Q Consensus 704 ~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~---P~~ 780 (924)
...+.|..++.+..+.. .-.-++..+++++-|.+. ..++++=.........+|+..++.-+-+... |-|
T Consensus 59 A~~~LGg~~i~l~~~~s-------s~~kgEsl~Dt~~vls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ 130 (302)
T PRK14805 59 GINKLGGHCLYLDQQNG-------ALGKRESVADFAANLSCW-ADAIVARVFSHSTIEQLAEHGSVPVINALCDLYHPCQ 130 (302)
T ss_pred HHHHcCCcEEECCCCcC-------cCCCCcCHHHHHHHHHHh-CCEEEEeCCChhHHHHHHHhCCCCEEECCCCCCChHH
Confidence 34556777776643221 112357788888888887 7777776677778889999888865555433 333
Q ss_pred HH-HHHHHHhh----CCCEEEEEcCCcCC
Q 002427 781 KA-DAVRSFQK----DGSIVAMVGDGIND 804 (924)
Q Consensus 781 K~-~~V~~lq~----~g~~v~~vGDg~nD 804 (924)
=+ ++....+. +|.+|+++||+.|=
T Consensus 131 aL~Dl~Ti~e~~g~l~g~kva~vGD~~~v 159 (302)
T PRK14805 131 ALADFLTLAEQFGDVSKVKLAYVGDGNNV 159 (302)
T ss_pred HHHHHHHHHHHhCCcCCcEEEEEcCCCcc
Confidence 22 11111112 36789999998774
No 350
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.88 E-value=5.1e+02 Score=32.72 Aligned_cols=208 Identities=15% Similarity=0.158 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcCCCeEEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEEEecce--
Q 002427 333 FVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTS-- 410 (924)
Q Consensus 333 ~~~~~~~le~~~~~k~~~~l~~l~~~~~~~~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~vl~G~~-- 410 (924)
+++++-+--...-+..++.-++|.++. ++ .+++.=++.|-...|..-|.||-|..+++...
T Consensus 220 I~iisv~Si~~sv~e~r~qs~rlr~mv----------~~-------~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~ 282 (1140)
T KOG0208|consen 220 IVIISVYSIVLSVYETRKQSIRLRSMV----------KF-------TCPVTVIRDGFWETVDSSELVPGDILYIPPPGKI 282 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cC-------CceEEEEECCEEEEEeccccccccEEEECCCCeE
Confidence 344555555566677777777777652 22 13344467899999999999999999999732
Q ss_pred ------eeecccccCCCcceeccCCCccc-------cce----------------eeecceEEEEEEEecChhHHHHHHH
Q 002427 411 ------YVNESMVTGEAVPVLKEINSPVI-------GGT----------------INLHGVLHIQATKVGSDAVLSQIIS 461 (924)
Q Consensus 411 ------~Vdes~LTGEs~pv~k~~g~~v~-------aGt----------------~~~~g~~~~~v~~~g~~t~~~~i~~ 461 (924)
.++-+.++-||+.- |+.|. .|+ .+..|.-.+++...+....++.+.+
T Consensus 283 ~PcDa~Li~g~civNEsmLT----GESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~R 358 (1140)
T KOG0208|consen 283 MPCDALLISGDCIVNESMLT----GESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLR 358 (1140)
T ss_pred eecceEEEeCcEEeeccccc----CCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEe
Confidence 35666666677653 55432 122 1334666666665555544433221
Q ss_pred HHHHhhcc--CChhHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhh--
Q 002427 462 LVETAQMS--KAPIQKF-------ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV-- 530 (924)
Q Consensus 462 ~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isv-- 530 (924)
...+ |..+-|. -.++.+=...+++.++++.++.+.+.. ..........
T Consensus 359 ----TGF~T~KGqLVRsilyPkP~~fkfyrds~~fi~~l~~ia~~gfiy~~-----------------i~l~~~g~~~~~ 417 (1140)
T KOG0208|consen 359 ----TGFSTTKGQLVRSILYPKPVNFKFYRDSFKFILFLVIIALIGFIYTA-----------------IVLNLLGVPLKT 417 (1140)
T ss_pred ----ccccccccHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh-----------------HhHHHcCCCHHH
Confidence 1112 2222221 123333344566666666555433321 0111111111
Q ss_pred hhh----hcccccchhHHHHHHHHHHHHHhcCccccCchHHHHccCCcEEEecCCCccccCceEEEEE
Q 002427 531 VVI----ACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTA 594 (924)
Q Consensus 531 lv~----~~P~aL~la~p~~l~~~~~~~~~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~ 594 (924)
+++ ..-.-.|-|+|.++.+++..+ .-+|.+-...|.--+--=..|+..+.-+
T Consensus 418 iiirsLDliTi~VPPALPAaltvG~~~a------------~~RLkkk~IfCisP~rIn~~G~i~~~cF 473 (1140)
T KOG0208|consen 418 IIIRSLDLITIVVPPALPAALTVGIIYA------------QSRLKKKGIFCISPQRINLCGKLNLVCF 473 (1140)
T ss_pred HhhhhhcEEEEecCCCchhhhhHHHHHH------------HHHHHhcCeEEcCccceeecceeeEEEE
Confidence 111 122345567777777776554 4567788888887776666677766544
No 351
>PLN02645 phosphoglycolate phosphatase
Probab=22.57 E-value=1.7e+02 Score=32.08 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHhhCCCEEEEEcCCc-CCHHHHhcCCce-EEe--cCChH--HHH----HhcCEEEecCChhHHHHHH
Q 002427 785 VRSFQKDGSIVAMVGDGI-NDSPALAAADVG-MAI--GAGTD--IAI----EAADYVLMRNSLEDVIIAI 844 (924)
Q Consensus 785 V~~lq~~g~~v~~vGDg~-nD~~al~~A~vg-ia~--~~~~~--~a~----~~ad~vl~~~~l~~l~~~i 844 (924)
.+.+.-....++||||.. +|..+-+.|++- |.+ |.++. ... ..+|.++ +++..+..++
T Consensus 240 ~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 240 ANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 333333456799999997 999999999854 333 42222 211 2468888 6677776544
No 352
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.50 E-value=2.7e+02 Score=23.13 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=30.4
Q ss_pred EEEecCCCcHhHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcCC
Q 002427 724 VMGIADPVKREAAVVVEGLLKMGVRPVMVT-GDNWRTAHAVAREIGI 769 (924)
Q Consensus 724 ~i~l~D~lr~~~~~~I~~L~~~gi~v~mlT-GD~~~ta~~iA~~~gi 769 (924)
++.+.++.++.+.+..+.|+++|+++.+.. +.+..-....|+..|+
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~ 52 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGA 52 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCC
Confidence 344566677888888999999999886643 3344444555555554
No 353
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=22.41 E-value=2.1e+02 Score=31.53 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCEEEEEcCCc--------------------CCHHHHhcC--CceEEecC----ChHHHHH--hcCEEEec
Q 002427 783 DAVRSFQKDGSIVAMVGDGI--------------------NDSPALAAA--DVGMAIGA----GTDIAIE--AADYVLMR 834 (924)
Q Consensus 783 ~~V~~lq~~g~~v~~vGDg~--------------------nD~~al~~A--~vgia~~~----~~~~a~~--~ad~vl~~ 834 (924)
.+++.|+++|.+|+.+.-|- .|-|.|-+- ++.+.++. +...+.+ .+|++|+|
T Consensus 70 ~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~~~~~~~~~~~~dviilD 149 (325)
T PRK00652 70 ALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAVSPDRVAAARALLAAHGADIIILD 149 (325)
T ss_pred HHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEEcCcHHHHHHHHHhcCCCCEEEEc
Confidence 34556667777777774331 477766544 67888873 3344443 58999999
Q ss_pred CChhH
Q 002427 835 NSLED 839 (924)
Q Consensus 835 ~~l~~ 839 (924)
|.|.+
T Consensus 150 DGfQh 154 (325)
T PRK00652 150 DGLQH 154 (325)
T ss_pred CCccC
Confidence 98764
No 354
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.19 E-value=1.5e+03 Score=27.80 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=39.5
Q ss_pred CChhhhHHHHHHHHcCCeEEEEEECC--------eEEEEEEecCCCcHhH-HHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 002427 694 IPDHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKREA-AVVVEGLLKMGVRPVMVTGDNWRTAHAVA 764 (924)
Q Consensus 694 ~~~~~~~~~~~~~~~g~~~i~va~~~--------~~lG~i~l~D~lr~~~-~~~I~~L~~~gi~v~mlTGD~~~ta~~iA 764 (924)
..++..+..+++.+.|-+++.+.-|. +-+|+-.+.-+..|+- .+.|++||+.|. +++.|||-..=|-+++
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~-~VaMtGDGvNDAPALa 524 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGR-LVAMTGDGTNDAPALA 524 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCC-eEEEECCCcchHHHHH
Confidence 34556666777777777766665443 1234433333444533 455677777663 4556677666555554
Q ss_pred H
Q 002427 765 R 765 (924)
Q Consensus 765 ~ 765 (924)
+
T Consensus 525 ~ 525 (679)
T PRK01122 525 Q 525 (679)
T ss_pred h
Confidence 3
No 355
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.16 E-value=3e+02 Score=27.01 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=65.1
Q ss_pred CCCChhhhHHHHHHHHcCCeEEEEEECC--------eEEEEEEecCCCcHhHHHHHHHHHHCCCe---EEEEcCCCHHHH
Q 002427 692 ITIPDHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKREAAVVVEGLLKMGVR---PVMVTGDNWRTA 760 (924)
Q Consensus 692 ~~~~~~~~~~~~~~~~~g~~~i~va~~~--------~~lG~i~l~D~lr~~~~~~I~~L~~~gi~---v~mlTGD~~~ta 760 (924)
.+..++..++..++.+.|.+++.++.+. .-+|+=.+.-..||-.+..=+.|++++++ |+|+ ||...|=
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmV-GDqL~TD 123 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMV-GDQLFTD 123 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEE-cchhhhh
Confidence 3556778889999999999998887643 34566666677788888888888888885 4555 9999999
Q ss_pred HHHHHHcCCceEEec
Q 002427 761 HAVAREIGIQDVMAD 775 (924)
Q Consensus 761 ~~iA~~~gi~~v~a~ 775 (924)
.-=++..|+-.+..+
T Consensus 124 Vlggnr~G~~tIlV~ 138 (175)
T COG2179 124 VLGGNRAGMRTILVE 138 (175)
T ss_pred hhcccccCcEEEEEE
Confidence 999999999766544
No 356
>PHA02669 hypothetical protein; Provisional
Probab=22.06 E-value=2e+02 Score=27.52 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHh
Q 002427 291 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAK-GKTSDAIKKLVE 357 (924)
Q Consensus 291 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~le~~~~-~k~~~~l~~l~~ 357 (924)
|..|+.++++.|.+| .+++.+-+++-+|-..|...| .|.++.+++|..
T Consensus 1 m~~LVii~iIvavi~-------------------LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLat 49 (210)
T PHA02669 1 MMALVLIGIIVAVIY-------------------LTGAAIYLLIEIGLAAERANKRSRVKANMRKLAT 49 (210)
T ss_pred CceeehhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456777777666443 234445455556666664443 345566666643
No 357
>PLN02423 phosphomannomutase
Probab=21.69 E-value=2e+02 Score=30.23 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=35.7
Q ss_pred EEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 002427 712 GILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 761 (924)
Q Consensus 712 ~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~ 761 (924)
.+++-.||+++- =..++.+...++|++|++. +++++.||.......
T Consensus 9 i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~ 54 (245)
T PLN02423 9 IALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKIS 54 (245)
T ss_pred EEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHH
Confidence 444667887762 2346889999999999986 999999999776653
No 358
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=21.64 E-value=4.9e+02 Score=33.35 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCe----EEEEEecCCCceeeEEEEeCCCCCCCCEEEECCCCcccceEEE
Q 002427 330 LITFVLFGKYLEILAKGKTSDAIKKLVELAPAT----ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 405 (924)
Q Consensus 330 li~~~~~~~~le~~~~~k~~~~l~~l~~~~~~~----~~v~~~~~~g~~~~~~~i~~~~l~~GDii~v~~G~~iP~Dg~v 405 (924)
+++...++.+.|.+++ ++-+.++++....-.. .+.....++=.++....+...|..|-|.++++.. .+=+|=-.
T Consensus 46 i~~~~~i~~~qe~~a~-~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~-~l~VdeS~ 123 (917)
T TIGR01116 46 LVANAIVGVWQERNAE-KAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLK-TLRVDQSI 123 (917)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEec-ceEEEccc
Confidence 3444556667666665 5566676654432211 1111111110111346778888899998888764 23455555
Q ss_pred Eeccee-eeccc--ccCCCc-ce----eccCCCccccceeeecceEEEEEEEecChhHHHHHHHHHHHhhc-cCChhHHH
Q 002427 406 VWGTSY-VNESM--VTGEAV-PV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM-SKAPIQKF 476 (924)
Q Consensus 406 l~G~~~-Vdes~--LTGEs~-pv----~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-~~~~~~~~ 476 (924)
+.|++. |.-.. ..++.. +. .--.|..+..|....-=..++.-+..| .+.+..+..++.+. -...+.++
T Consensus 124 LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~g---ki~~~~~~~~~~~t~lq~~l~~~ 200 (917)
T TIGR01116 124 LTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIG---KIRDEMRAAEQEDTPLQKKLDEF 200 (917)
T ss_pred ccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHH---HHHHHhhccCCCCCCHHHHHHHH
Confidence 556653 22111 111111 11 124577777775322111111111112 11121111111111 12234555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCccHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHH
Q 002427 477 ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 553 (924)
Q Consensus 477 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isvlv~~~P~aL~la~p~~l~~~~~~ 553 (924)
...+..+...+.++..++....|........+...|. ..+..++..+++....+.|..+.++.-.+.....++
T Consensus 201 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~ 273 (917)
T TIGR01116 201 GELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAI----YYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK 273 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHH----HHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC
Confidence 5555544443333322222211110000000000000 124455666777888888888888888777654443
No 359
>PLN02527 aspartate carbamoyltransferase
Probab=21.58 E-value=4.1e+02 Score=28.99 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred HHHHcCCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEeccC----hh
Q 002427 704 ELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM----PA 779 (924)
Q Consensus 704 ~~~~~g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~~~----P~ 779 (924)
.....|..++.+..+..- ..=.-++..+++++-|.+. ..++++=.-...+...+|+...+.-|=+... |-
T Consensus 60 A~~~LGg~~i~l~~~~~~-----s~~~kgEs~~Dta~vls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPt 133 (306)
T PLN02527 60 AMKRLGGEVLTTENAGEF-----SSAAKGETLEDTIRTVEGY-SDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPT 133 (306)
T ss_pred HHHHcCCCEEEeCCCCCc-----cccCCCcCHHHHHHHHHHh-CcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChH
Confidence 345567777776542100 0111257788888888887 6666666666778888999888876665442 44
Q ss_pred hHHHHHHHHh-h----CCCEEEEEcCCcC
Q 002427 780 GKADAVRSFQ-K----DGSIVAMVGDGIN 803 (924)
Q Consensus 780 ~K~~~V~~lq-~----~g~~v~~vGDg~n 803 (924)
|=+.=+-.++ + +|.+|++|||+.|
T Consensus 134 Q~LaDl~Ti~e~~g~l~g~kva~vGD~~~ 162 (306)
T PLN02527 134 QALLDVYTIQREIGRLDGIKVGLVGDLAN 162 (306)
T ss_pred HHHHHHHHHHHHhCCcCCCEEEEECCCCC
Confidence 4321111121 1 3679999999966
No 360
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.45 E-value=5.4e+02 Score=25.25 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHH----Hc-CCceEEec---cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHH
Q 002427 736 AVVVEGLLKMGVRPVMVTGDNWRTAHAVAR----EI-GIQDVMAD---VMPAGKADAVRSFQKDGSIVAMVGDGINDSPA 807 (924)
Q Consensus 736 ~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~----~~-gi~~v~a~---~~P~~K~~~V~~lq~~g~~v~~vGDg~nD~~a 807 (924)
.+.++.+.+.|.++.++= .+++++...++ +. |+.-+... .++++-.++++.+++.+..+.++|-|.---..
T Consensus 38 ~~l~~~~~~~~~~ifllG-~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~ 116 (172)
T PF03808_consen 38 PDLLRRAEQRGKRIFLLG-GSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQER 116 (172)
T ss_pred HHHHHHHHHcCCeEEEEe-CCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 455566666677777774 34455443333 32 33211111 25678888999999888889999999764332
Q ss_pred H-------hcCCceEEecCChHHHHH---hcCEEEecCChhHHHHHHHHHHHH
Q 002427 808 L-------AAADVGMAIGAGTDIAIE---AADYVLMRNSLEDVIIAIDLSRKT 850 (924)
Q Consensus 808 l-------~~A~vgia~~~~~~~a~~---~ad~vl~~~~l~~l~~~i~~~r~~ 850 (924)
+ -.+.|.+++|..-|.... -|.-.+-+-+|..+.+++.+=|+.
T Consensus 117 ~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glEWlyRl~~eP~Rl 169 (172)
T PF03808_consen 117 WIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLEWLYRLLQEPKRL 169 (172)
T ss_pred HHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcHHHHHHHhChHhh
Confidence 2 223366777654333211 122222233455555555554443
No 361
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.20 E-value=2.7e+02 Score=29.00 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=32.8
Q ss_pred cHhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce
Q 002427 732 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD 771 (924)
Q Consensus 732 r~~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~ 771 (924)
++..+++|++|+++||+|-+.= |........|+++|-+.
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFi-dP~~~qi~~A~~~GAd~ 150 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGADR 150 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcCE
Confidence 3567899999999999986654 88888889999999874
No 362
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.03 E-value=4.2e+02 Score=25.13 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=61.3
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcC--CCH--------HHHHHHHHHcCCceEEeccChhhHHHHHHHHh
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG--DNW--------RTAHAVAREIGIQDVMADVMPAGKADAVRSFQ 789 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTG--D~~--------~ta~~iA~~~gi~~v~a~~~P~~K~~~V~~lq 789 (924)
+-+++++++|.+...+-.+.+.|+++|++++=+-- +-. .+-..|.+.+.+.++|- .|+.=.++++..-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR--~~e~~~~i~~eal 94 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR--RSEAAPEVAREAL 94 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec--ChhhhHHHHHHHH
Confidence 44788999999999999999999999999987733 100 11122333444556774 3677778888887
Q ss_pred hCCCEEEEEcCCcCCHHHH
Q 002427 790 KDGSIVAMVGDGINDSPAL 808 (924)
Q Consensus 790 ~~g~~v~~vGDg~nD~~al 808 (924)
+.|.+|.+.--|+-+-.|.
T Consensus 95 ~~~~kv~W~QlGi~n~ea~ 113 (140)
T COG1832 95 EKGAKVVWLQLGIRNEEAA 113 (140)
T ss_pred hhCCCeEEEecCcCCHHHH
Confidence 7788888888886555443
No 363
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.95 E-value=1.4e+02 Score=25.22 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=27.9
Q ss_pred HhhHHhhhhcCCCceeEEEecCCCeEEEeeCCCCCChhhHHHhhhhcC
Q 002427 143 VNSVEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 190 (924)
Q Consensus 143 ~~~ie~~l~~~~GV~~v~vn~~~~~~~V~yd~~~~~~~~i~~~I~~~g 190 (924)
+..++=.|.+.++|-.+=+|.=.+...|.||+...+.+++++.+++..
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 445566778889999999999999999999999999999999999887
No 364
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.94 E-value=1.4e+02 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCceeeEEEEeCCC-CCCCCEEEECC
Q 002427 360 PATALLVVKDKVGKCIEEREIDALL-IQSGDTLKVLP 395 (924)
Q Consensus 360 ~~~~~v~~~~~~g~~~~~~~i~~~~-l~~GDii~v~~ 395 (924)
+..+.+++.+.+|+. +...++..+ |+|||+|.|..
T Consensus 201 ~~~v~i~R~~~~g~~-~~~~~~~~~~l~~gDii~V~~ 236 (239)
T TIGR03028 201 ERGIRVMRRDDKGAV-EEVSGELGDLVQPDDVIYVRE 236 (239)
T ss_pred cceEEEEEECCCCcE-EEEecCCCcccCCCCEEEEeC
Confidence 345677766566753 334444444 89999998865
No 365
>PRK13670 hypothetical protein; Provisional
Probab=20.90 E-value=6e+02 Score=28.83 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred eEEEEEEecCCCcHhHHHHHHHHHH---CCCeEEEEcCC----------CHHHHHHHHHHcCCceE------EeccChhh
Q 002427 720 NLIGVMGIADPVKREAAVVVEGLLK---MGVRPVMVTGD----------NWRTAHAVAREIGIQDV------MADVMPAG 780 (924)
Q Consensus 720 ~~lG~i~l~D~lr~~~~~~I~~L~~---~gi~v~mlTGD----------~~~ta~~iA~~~gi~~v------~a~~~P~~ 780 (924)
+.+|+|+=-|++-.|=...|++.++ +|..+++++|+ +...-..+|.++|++-| |+..+|++
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~ 81 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADF 81 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHH
Confidence 4679999999999999888888875 47777777887 55666789999999843 78888886
Q ss_pred HHH-HHHHHhhCCCEEEEEcCCcCCHHHHhc
Q 002427 781 KAD-AVRSFQKDGSIVAMVGDGINDSPALAA 810 (924)
Q Consensus 781 K~~-~V~~lq~~g~~v~~vGDg~nD~~al~~ 810 (924)
=.+ -|+.|.+-|-....+|....|...|+.
T Consensus 82 F~~~aV~iL~~l~v~~lv~G~e~g~~~~L~~ 112 (388)
T PRK13670 82 FAEGAVSILDALGVDSLVFGSESGDIEDFQK 112 (388)
T ss_pred HHHhHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 553 355565567778899998778766653
No 366
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=20.69 E-value=3.6e+02 Score=31.26 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEec--cChhhH-HH--HHHHHhhCCCEEE
Q 002427 734 EAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMAD--VMPAGK-AD--AVRSFQKDGSIVA 796 (924)
Q Consensus 734 ~~~~~I~~L~~~gi~v~mlTGD~~~ta~~iA~~~gi~~v~a~--~~P~~K-~~--~V~~lq~~g~~v~ 796 (924)
...+.=+.|++.|++..+.+||.......+++++++..|+.. .++..+ .. +-+.|++.|..+.
T Consensus 56 sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~ 123 (461)
T COG0415 56 SLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVH 123 (461)
T ss_pred HHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEE
Confidence 345555678889999999999999999999999999888764 333333 22 5566777775443
No 367
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=20.67 E-value=4.2e+02 Score=28.39 Aligned_cols=100 Identities=11% Similarity=0.136 Sum_probs=62.7
Q ss_pred hHhhcCCCCChhhhHHHHHHHHc----CCeEEEEEECCeEEEEEEecCCCcHhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 002427 686 LLNESGITIPDHVESFVVELEES----ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 761 (924)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~va~~~~~lG~i~l~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ta~ 761 (924)
|+++.+.+ +.+..++...++.. ..+-..+-+++..+ -.++..+....-|..|++.|++++++-|=.+..-.
T Consensus 8 ~~~~~~~~-~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~----~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~ 82 (271)
T cd04236 8 FLHQKGGD-PREARYWLTQFQIAMPNDWPAFAVLEVDHSVF----RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGT 82 (271)
T ss_pred HHHHhCCC-HHHHHHHHHHhhccCCCCCCCEEEEEEChhhh----cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhh
Confidence 44444432 34556666666653 35566666665543 23456688899999999999999999998775544
Q ss_pred HHHHHcCCceEEeccCh-hhHHHHHHHHhhCCC
Q 002427 762 AVAREIGIQDVMADVMP-AGKADAVRSFQKDGS 793 (924)
Q Consensus 762 ~iA~~~gi~~v~a~~~P-~~K~~~V~~lq~~g~ 793 (924)
... +..-...++.- +.-.+++..+++.|-
T Consensus 83 ~l~---~~~~~~~~~v~~~~n~~Lv~~L~~~G~ 112 (271)
T cd04236 83 NMS---DLELQAARSRLVKDCKTLVEALQANSA 112 (271)
T ss_pred hhc---CCcchheehhHHHHHHHHHHHHHhCCC
Confidence 433 33222222111 555678899988754
No 368
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.46 E-value=2e+02 Score=30.01 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcCCceEE---------eccChhhH--HHHHHHHhhCCCEEEEEcC
Q 002427 733 REAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREIGIQDVM---------ADVMPAGK--ADAVRSFQKDGSIVAMVGD 800 (924)
Q Consensus 733 ~~~~~~I~~L~~~gi~v~mlTG-D~~~ta~~iA~~~gi~~v~---------a~~~P~~K--~~~V~~lq~~g~~v~~vGD 800 (924)
++..+++++||+.|..+.++|- |...- .+-..+|+...| .-..|+-+ ...++.+.-+...++++||
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r~~--~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD 193 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDRLR--LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGD 193 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHHHH--HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecC
Confidence 3445999999999988888874 33332 566667764322 12345544 2344555555667999999
Q ss_pred C-cCCHHHHhcCCce-EEecCChHHHH
Q 002427 801 G-INDSPALAAADVG-MAIGAGTDIAI 825 (924)
Q Consensus 801 g-~nD~~al~~A~vg-ia~~~~~~~a~ 825 (924)
. .||..+-+.++.- +-+.++....+
T Consensus 194 ~l~nD~~gA~~~G~~ailv~~~~~~~~ 220 (237)
T KOG3085|consen 194 LLENDYEGARNLGWHAILVDNSITALK 220 (237)
T ss_pred ccccccHhHHHcCCEEEEEccccchhh
Confidence 8 7999887776643 44444433333
No 369
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.15 E-value=2.4e+02 Score=30.37 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=46.4
Q ss_pred cCCCcHhHHHHHHHHHHC-CCeE---EEEcCCCHHHHHH------HHHHcCCceEEecc----ChhhHHHHHHHHhhC
Q 002427 728 ADPVKREAAVVVEGLLKM-GVRP---VMVTGDNWRTAHA------VAREIGIQDVMADV----MPAGKADAVRSFQKD 791 (924)
Q Consensus 728 ~D~lr~~~~~~I~~L~~~-gi~v---~mlTGD~~~ta~~------iA~~~gi~~v~a~~----~P~~K~~~V~~lq~~ 791 (924)
.+++|++.++-++.|++. |+++ +++-||++....+ .++++||.-.+-+. ++++=.+.++.|.+.
T Consensus 12 a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 12 AKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456788999999999876 7653 6678999887665 46789998655544 455556777777665
Done!