BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002428
(923 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 852 ATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+++ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 910 TEFIVALNKV 919
T F+VA NK+
Sbjct: 123 TPFVVAANKI 132
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 88/130 (67%), Gaps = 2/130 (1%)
Query: 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 851
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKK 62
Query: 852 ATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+++ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR 122
Query: 910 TEFIVALNKV 919
T F+VA NK+
Sbjct: 123 TPFVVAANKI 132
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 16/127 (12%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R P+ IMGHVD GKT LLD IR + V E EAGGITQ IGA
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY----------------QV 50
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
T+ + +DTPGHE+FT +R+RG+ + DI ILVV G+ PQT+E++N K N
Sbjct: 51 TVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI 110
Query: 913 IVALNKV 919
IVA+NK+
Sbjct: 111 IVAINKM 117
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 18/111 (16%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
R+P+ IMGHVD GKT LL+ IR T V GEAGGITQ IGA + EN
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN------------ 50
Query: 853 TLKVPGLLV-IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 902
G++ +DTPGH +FT++R+RG+ DI +LVV G+ PQTIE++
Sbjct: 51 -----GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 15/126 (11%)
Query: 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 852
RSP+ IMGHVD GKT LLD +R T V EAGGITQ IGA + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 912
+DTPGH +F+ +R+RG+ + DI ILVV G+ QT+ES+ K +
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI 107
Query: 913 IVALNK 918
++A+NK
Sbjct: 108 VLAINK 113
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 799 IMGHVDTGKT---KLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKAN 851
I GH+D GKT K+L I T+ E + GIT IG + F EN R
Sbjct: 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR--------- 74
Query: 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 911
+ ++D PGH + + D+A++VVD G + QT E + +L N
Sbjct: 75 -------ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 127
Query: 912 FIVALNK 918
IV + K
Sbjct: 128 IIVVITK 134
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAE 839
++N+R+ CI+ HVD GK+ L D + R Q + + ++ G T +
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGIT-VKXQ 59
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+R + N T K L +IDTPGH F+ SR C+ A+L++D G+E QT+
Sbjct: 60 AVRXFYKAKDGN-TYK---LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV 115
Query: 900 ESLNLLKMRNTEFIVALNKV 919
+ ++ I +NK+
Sbjct: 116 ANFWKAVEQDLVIIPVINKI 135
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENI-RERTRELKANA-TLK 855
I+ H+D GK+ L D I GG++ +++ A + ++ RER +KA + TL
Sbjct: 9 IIAHIDHGKSTLSDRIIQI------CGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 856 VPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 909 NTEFIVALNKV 919
+ E + LNK+
Sbjct: 123 DLEVVPVLNKI 133
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENI-RERTRELKANA-TLK 855
I+ H+D GK+ L D I GG++ +++ A + ++ RER +KA + TL
Sbjct: 9 IIAHIDHGKSTLSDRIIQI------CGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 856 VPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 908
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 909 NTEFIVALNKV 919
+ E + LNK+
Sbjct: 123 DLEVVPVLNKI 133
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 789 EENLRSPICCIMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAE 839
++N+R+ CI+ HVD GK+ L D + R Q + + ++ G T +
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGIT-VKMQ 59
Query: 840 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 899
+R + N T K L +IDTPGH F+ SR C+ A+L++D G+E QT+
Sbjct: 60 AVRMFYKAKDGN-TYK---LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV 115
Query: 900 ESLNLLKMRNTEFIVALNKV 919
+ ++ I +NK+
Sbjct: 116 ANFWKAVEQDLVIIPVINKI 135
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 9/65 (13%)
Query: 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFI 913
++ DTPGHE +T + G+ CD+AI++VD +G++ QT I SL +K +
Sbjct: 106 FIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIK----HIV 161
Query: 914 VALNK 918
VA+NK
Sbjct: 162 VAINK 166
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 798 CIMGHVDTGKTKLLD--CIRGTNVQEGEAGGITQQIGATYFPAENI-RERTRELKANATL 854
I+ H D GKT L + + G +Q AG + + A + ++ + ER R + ++
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQM--AGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 855 -------KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 907
+V LL DTPGH+ F+ R D A++V+D G+E QT + +++ +M
Sbjct: 93 MQFPYRDRVVNLL--DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM 150
Query: 908 RNTEFIVALNKV 919
R T + +NK+
Sbjct: 151 RATPVMTFVNKM 162
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 798 CIMGHVDTGKTKLLD--CIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATL 854
I+ H D GKT L + + G +Q AG I + A + ++ E+ R + ++
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWXELEKQRGISVTTSV 74
Query: 855 -KVPG----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
+ P + ++DTPGH FT R D A+ V+D G+EP+TI+ + ++R+
Sbjct: 75 XQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRH 134
Query: 910 TEFIVALNK 918
T +NK
Sbjct: 135 TPIXTFINK 143
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKL 144
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKL 144
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--- 853
I H+D GKT + I + + G + + F E RER + A T
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
K + +IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 799 IMGHVDTGKTKLLDCI------------------RGTNVQEGEAGGITQQIGATYFPAEN 840
++ HVD GKT L + + R N GIT Q G T F EN
Sbjct: 7 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 66
Query: 841 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900
K N +IDTPGH F R + D AIL++ G++ QT
Sbjct: 67 T-------KVN---------IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI 110
Query: 901 SLNLLKMRNTEFIVALNKV 919
+ L+ I +NK+
Sbjct: 111 LFHALRKMGIPTIFFINKI 129
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 842
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 8 RQAEVNIG-----MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 59
Query: 843 ERTRELKANATLKVPG----------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 892
+ + + + P + ID+PGHE+ G+ L D AILV+
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE 119
Query: 893 GL-EPQTIESLNLLKMRNTE-FIVALNKVRF 921
PQT E L L++ + I+A NK+
Sbjct: 120 PCPRPQTREHLMALQIIGQKNIIIAQNKIEL 150
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 797 CCIMGHVDTGKTKLLDCI---RG----TNVQEGE--AGGITQQIGATYFPAENIRE-RTR 846
++GHVD GK+ L+ + RG V+E E A + ++ F + ++E R R
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 847 ELKANATL-----KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------L 894
+ N T K +ID PGH F G+ D AILVV G +
Sbjct: 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 128
Query: 895 EPQTIESLNLLK-MRNTEFIVALNKVRFS 922
E QT E + L K M + IVA+NK+ +
Sbjct: 129 EGQTREHIILAKTMGLDQLIVAVNKMDLT 157
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 842
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNIG-----MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 843 ERTRELKANATLKVPG----------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 892
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 893 GL-EPQTIESLNLLKMRNTE-FIVALNKVRF 921
PQT E L L++ + I+A NK+
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGAT 834
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 835 YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894
+E E +E+K + +ID+PGH F++ + + D A++VVD + G+
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 895 EPQTIESLNLLKMRNTEFIVALNKV 919
QT L + +V +NKV
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKV 160
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 791 NLRSPICCIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGAT 834
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 835 YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894
+E E +E+K + +ID+PGH F++ + + D A++VVD + G+
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 895 EPQTIESLNLLKMRNTEFIVALNKV 919
QT L + +V +NKV
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKV 160
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 842
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNIG-----MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 843 ERTRELKANATLKVPG----------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 892
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 893 GL-EPQTIESLNLLKMRNTE-FIVALNKVRF 921
PQT E L L++ + I+A NK+
Sbjct: 119 PCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 786 KQAEENLRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAG-GITQQIGATYFPAENIR 842
+QAE N+ +GHVD GKT L + G T+ E GIT +IG F IR
Sbjct: 7 RQAEVNIGX-----VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 843 ERTRELKANATLKVPG----------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 892
+ + + P + ID PGHE+ G+ L D AILV+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Query: 893 GL-EPQTIESLNLLKMRNTE-FIVALNKVRF 921
PQT E L L++ + I+A NK+
Sbjct: 119 PCPRPQTREHLXALQIIGQKNIIIAQNKIEL 149
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +ID PGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LK 855
I H+D GKT + I + + G + + F E RER + A T K
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCFWK 75
Query: 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+ +ID PGH FT R + D AI+V D G+EPQ+
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 799 IMGHVDTGKTKLLDCI-----RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853
I H+D GKT + I R + E G T E RER + A T
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDF------MEQERERGITITAAVT 70
Query: 854 ---LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
K + +ID PGH FT R + D AI+V D G+EPQ+
Sbjct: 71 TCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE---------LK 849
IM H+D GKT + I G +IG T+ A + +E
Sbjct: 15 IMAHIDAGKTTTTERILYYT-------GRIHKIGETHEGASQMDWMEQEQDRGITITSAA 67
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
A + + +IDTPGH FT R + D A+ V+D G+EPQT
Sbjct: 68 TTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYG 127
Query: 910 TEFIVALNKV 919
IV +NK+
Sbjct: 128 VPRIVFVNKM 137
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 783 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF---PA 838
A PK Q E N+ ++GHVD GKT L+ I G + + G IG P
Sbjct: 1 AWPKVQPEVNIG-----VVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPE 54
Query: 839 ENIRERTRELKANATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894
+ E + K+ + P L ID PGHE G+ L D AILVV
Sbjct: 55 AYVTEPS--CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 112
Query: 895 -EPQTIE---SLNLLKMRNTEFIVALNKV 919
+PQT E +L ++ ++N I+ NKV
Sbjct: 113 PQPQTREHFVALGIIGVKN--LIIVQNKV 139
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 18/125 (14%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANA--- 852
+GHVD GKT L I + G GA + E I ER R + NA
Sbjct: 20 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 70
Query: 853 --TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
+ D PGH + G+ D ILVV G PQT E L L +
Sbjct: 71 EYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGV 130
Query: 911 EFIVA 915
E +V
Sbjct: 131 EHVVV 135
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 356
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 915 A-LNK 918
LNK
Sbjct: 417 VFLNK 421
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919
+IDTPGH FT R + D A+ V+D G+EPQT IV +NK+
Sbjct: 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKM 137
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 859
+GHVD GKT L I T V GG A I T ++ + +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGG----------AARGITINTSHVEYDTPTR--HY 62
Query: 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNK 918
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK
Sbjct: 63 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 122
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRE 843
QAE N+ ++GHVD GKT L + G E GI+ ++G Y E IR+
Sbjct: 6 QAEVNIG-----MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG--YADCE-IRK 57
Query: 844 RTRELKANATLKVPGLLV----------IDTPGHESFTNLRSRGSGLCDIAILVVDIMHG 893
+ + P L +D+PGHE+ G+ L D AILV+
Sbjct: 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117
Query: 894 L-EPQTIESLNLLKMRNTE-FIVALNKV 919
+PQT E L L++ + I+ NK+
Sbjct: 118 CPQPQTKEHLMALEILGIDKIIIVQNKI 145
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 356
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 416
Query: 915 A-LNKV 919
LNK
Sbjct: 417 VFLNKC 422
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 783 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPA 838
A PK Q E N+ ++GHVD GKT L+ I G E G+T ++G +
Sbjct: 1 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLG---YAE 52
Query: 839 ENIRERTRELKANATLKVPG---------------LLVIDTPGHESFTNLRSRGSGLCDI 883
NI K A + P + ID PGHE G+ L D
Sbjct: 53 TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDG 112
Query: 884 AILVVDIMHGL-EPQTIE---SLNLLKMRNTEFIVALNKV 919
AILVV +PQT E +L ++ ++N I+ NKV
Sbjct: 113 AILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNKV 150
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 783 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPA 838
A PK Q E N+ ++GHVD GKT L+ I G E G+T ++G +
Sbjct: 2 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLG---YAE 53
Query: 839 ENIRERTRELKANATLKVPG---------------LLVIDTPGHESFTNLRSRGSGLCDI 883
NI K A + P + ID PGHE G+ L D
Sbjct: 54 TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDG 113
Query: 884 AILVVDIMHGL-EPQTIE---SLNLLKMRNTEFIVALNKV 919
AILVV +PQT E +L ++ ++N I+ NKV
Sbjct: 114 AILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNKV 151
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 71
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 915 A-LNK 918
LNK
Sbjct: 132 VFLNK 136
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 898
+IDTPGH FT R + D AI+V D G+EPQ+
Sbjct: 48 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 85
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 71
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 915 A-LNK 918
LNK
Sbjct: 132 VFLNK 136
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 71
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 72 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 131
Query: 915 A-LNK 918
LNK
Sbjct: 132 VFLNK 136
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 72
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 132
Query: 915 A-LNK 918
LNK
Sbjct: 133 VFLNK 137
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 9 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 63
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 64 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 123
Query: 915 A-LNK 918
LNK
Sbjct: 124 VFLNK 128
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT---LKV 856
+GHVD GKT L I T V GG + E E+ R + N +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPE---EKARGITINTSHVEYDT 72
Query: 857 P--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914
P +D PGH + G+ D AILVV G PQT E + L + +I+
Sbjct: 73 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 132
Query: 915 A-LNK 918
LNK
Sbjct: 133 VFLNK 137
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 18/125 (14%)
Query: 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANA--- 852
+GHVD GKT L I + G GA + E I ER R + NA
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 59
Query: 853 --TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 910
+ D PGH + G+ D ILVV G PQT E L L +
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 911 EFIVA 915
E +V
Sbjct: 120 EHVVV 124
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 81 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D PGH + G+ D AILVV G PQT E + L + +IV +NKV
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV 138
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE---------LK 849
IM H+D GKT + I G +IG T+ A + +E
Sbjct: 15 IMAHIDAGKTTTTERILYYT-------GRIHKIGETHEGASQMDWMEQEQDRGITITSAA 67
Query: 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 909
A + + +IDTPGH T R + D A+ V+D G+EPQT
Sbjct: 68 TTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYG 127
Query: 910 TEFIVALNKV 919
IV +NK+
Sbjct: 128 VPRIVFVNKM 137
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 64/154 (41%), Gaps = 26/154 (16%)
Query: 783 ATPK-QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF----- 836
A PK Q E N+ ++GHVD GKT L+ I G + I T
Sbjct: 1 AWPKVQPEVNI-----GVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCES 55
Query: 837 ---PAENIRERTRELKANATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVD 889
P + E + K+ + P L ID PGHE G+ L D AILVV
Sbjct: 56 CKKPEAYVTEPS--CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 113
Query: 890 IMHGL-EPQTIE---SLNLLKMRNTEFIVALNKV 919
+PQT E +L ++ ++N I+ NKV
Sbjct: 114 ANEPFPQPQTREHFVALGIIGVKN--LIIVQNKV 145
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 799 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK 855
I H+D GKT + I G N + GE AT E +ER + + AT
Sbjct: 14 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 69
Query: 856 VPGLL----------VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT---IESL 902
+ +IDTPGH FT R + D A++V + G++PQ+
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 903 NLLKMRNTEFIVALNKVRFSF 923
N K+ F+ ++++ +F
Sbjct: 130 NKYKVPRIAFVNKMDRMGANF 150
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 799 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK 855
I H+D GKT + I G N + GE AT E +ER + + AT
Sbjct: 15 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 70
Query: 856 VPGLL----------VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT---IESL 902
+ +IDTPGH FT R + D A++V + G++PQ+
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 903 NLLKMRNTEFIVALNKVRFSF 923
N K+ F+ ++++ +F
Sbjct: 131 NKYKVPRIAFVNKMDRMGANF 151
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 798 CIMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE--- 847
++GHVD GK+ L L+ + + +++ + ++ +G + F I ++T E
Sbjct: 171 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERE 228
Query: 848 -------LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HG 893
++ + ++D PGH F G D+AIL VD
Sbjct: 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 288
Query: 894 LEPQTIESLNL---LKMRNTEFIVALNKV 919
L+ QT E + L L + N I+A+NK+
Sbjct: 289 LDGQTKEHMLLASSLGIHN--LIIAMNKM 315
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919
+IDTPGH T R + D A+ V+D G+EPQT IV +NK+
Sbjct: 79 IIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKM 137
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 797 CCIMGHVDTGKTKLLDCI--RGTNVQEGEAGGITQQI---GATYFPAENI-----RERTR 846
++GHVD GK+ L+ + R ++E + + +Q G F I ER R
Sbjct: 12 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 71
Query: 847 ELKANATL-----KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------L 894
+ + T K +ID PGH F G+ D AILVV G
Sbjct: 72 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 131
Query: 895 EPQTIESLNLLKMRNTE-FIVALNKV 919
E QT E L L + E IVA+NK+
Sbjct: 132 EGQTREHLLLARTMGIEQIIVAVNKM 157
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 797 CCIMGHVDTGKTKLLDCI--RGTNVQEGEAGGITQQI---GATYFPAENI-----RERTR 846
++GHVD GK+ L+ + R ++E + + +Q G F I ER R
Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68
Query: 847 ELKANATL-----KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------L 894
+ + T K +ID PGH F G+ D AILVV G
Sbjct: 69 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 128
Query: 895 EPQTIESLNLLKMRNTE-FIVALNKV 919
E QT E L L + E IVA+NK+
Sbjct: 129 EGQTREHLLLARTMGIEQIIVAVNKM 154
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 799 IMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE---- 847
++GHVD GK+ L L+ + + +++ + ++ +G + F I ++T E
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERER 95
Query: 848 ------LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HGL 894
++ + ++D PGH F G D+AIL VD L
Sbjct: 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 155
Query: 895 EPQTIESLNL---LKMRNTEFIVALNKV 919
+ QT E + L L + N I+A+NK+
Sbjct: 156 DGQTKEHMLLASSLGIHN--LIIAMNKM 181
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNK 918
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 78
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNK 918
+D PGH + G+ D AILVV G PQT E + L + +I+ LNK
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 78
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919
VIDTPGH FT R + D A++V G+EPQ+ IV +NK+
Sbjct: 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKM 147
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 783 ATPKQAEENLRSPIC--CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--------IG 832
+ P+ E++ P+ + GHVD+GK+ +L I + GE + Q G
Sbjct: 164 SVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIM---FELGEINSRSMQKLHNEAANSG 220
Query: 833 ATYFPAENIRERTRELKAN-ATLKVPGLL---------VIDTPGHESFTNLRSRGSGLCD 882
F + + T E +A T+ V + D PGH F + G+ D
Sbjct: 221 KGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSAD 280
Query: 883 IAILVVDIMHG------LEP-QTIESLNLLK-MRNTEFIVALNKV 919
A+LVVD LE QT E LL+ + +E +V++NK+
Sbjct: 281 FAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 799 IMGHVDTGKTKL-------LDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE---- 847
++GHVD GK+ L L+ + + +++ + ++ G + F I ++T E
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRE--SETXGKSSFKFAWIXDQTNEERER 95
Query: 848 ------LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD 889
++ + ++D PGH F G D AIL VD
Sbjct: 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVD 143
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 808 TKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867
T L TN QE G T ++G YF E K + T ++D PGH
Sbjct: 63 TWYLSWALDTN-QEERDKGKTVEVGRAYFETE---------KKHFT-------ILDAPGH 105
Query: 868 ESFTNLRSRGSGLCDIAILVV 888
+SF G+ D+A+LV+
Sbjct: 106 KSFVPNMIGGASQADLAVLVI 126
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA-LNKV 919
+D GH + G+ D AILVV G QT E + L + +IV +NKV
Sbjct: 80 VDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKV 138
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 826 GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAI 885
G T ++G YF E+ R ++D PGH+ + G+ DI +
Sbjct: 106 GKTVEVGRAYFETEHRR----------------FSLLDAPGHKGYVTNMINGASQADIGV 149
Query: 886 LVVDIMHG 893
LV+ G
Sbjct: 150 LVISARRG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,520,691
Number of Sequences: 62578
Number of extensions: 356394
Number of successful extensions: 653
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 80
length of query: 923
length of database: 14,973,337
effective HSP length: 108
effective length of query: 815
effective length of database: 8,214,913
effective search space: 6695154095
effective search space used: 6695154095
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)