Query 002428
Match_columns 923
No_of_seqs 391 out of 1339
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 1.5E-71 3.2E-76 633.3 32.4 586 278-923 1-606 (1064)
2 COG0532 InfB Translation initi 99.9 6.8E-22 1.5E-26 225.1 12.1 119 791-922 2-120 (509)
3 TIGR00491 aIF-2 translation in 99.8 1.2E-18 2.6E-23 204.7 14.5 132 791-922 1-134 (590)
4 PRK04004 translation initiatio 99.8 1.7E-18 3.8E-23 203.5 14.6 132 791-922 3-136 (586)
5 PRK05306 infB translation init 99.7 7E-18 1.5E-22 203.2 13.9 116 791-922 287-402 (787)
6 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.9E-17 4.2E-22 159.8 13.0 115 795-922 1-115 (168)
7 TIGR00487 IF-2 translation ini 99.7 1.4E-17 3E-22 195.9 14.0 116 792-922 85-200 (587)
8 PF00009 GTP_EFTU: Elongation 99.7 7.4E-18 1.6E-22 169.6 9.1 128 795-922 4-135 (188)
9 KOG1145 Mitochondrial translat 99.7 4.4E-17 9.6E-22 185.3 12.2 116 792-922 151-266 (683)
10 CHL00189 infB translation init 99.7 7E-17 1.5E-21 193.4 12.5 119 792-922 242-360 (742)
11 cd04171 SelB SelB subfamily. 99.7 1.8E-16 4E-21 151.7 12.6 113 795-922 1-117 (164)
12 cd01890 LepA LepA subfamily. 99.7 5.5E-16 1.2E-20 152.1 11.9 120 797-922 3-132 (179)
13 cd01885 EF2 EF2 (for archaea a 99.7 3.4E-16 7.3E-21 164.1 10.8 120 796-922 2-138 (222)
14 cd01891 TypA_BipA TypA (tyrosi 99.7 6.8E-16 1.5E-20 155.7 12.6 126 792-922 2-130 (194)
15 cd01884 EF_Tu EF-Tu subfamily. 99.6 6.5E-16 1.4E-20 158.6 11.8 127 795-922 3-131 (195)
16 cd04169 RF3 RF3 subfamily. Pe 99.6 7.7E-16 1.7E-20 165.2 11.2 129 792-922 2-136 (267)
17 cd00881 GTP_translation_factor 99.6 1.2E-15 2.6E-20 149.4 10.9 126 796-922 1-127 (189)
18 cd04124 RabL2 RabL2 subfamily. 99.6 3.1E-15 6.6E-20 146.0 12.2 114 795-922 1-117 (161)
19 cd01886 EF-G Elongation factor 99.6 2.5E-15 5.5E-20 161.6 11.7 127 796-922 1-129 (270)
20 cd04167 Snu114p Snu114p subfam 99.6 4.1E-15 8.9E-20 153.0 12.8 124 797-922 3-136 (213)
21 cd01889 SelB_euk SelB subfamil 99.6 3.6E-15 7.9E-20 150.2 11.6 126 795-922 1-133 (192)
22 cd04168 TetM_like Tet(M)-like 99.6 2.7E-15 5.8E-20 158.3 10.9 127 796-922 1-129 (237)
23 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.2E-15 6.9E-20 153.6 10.9 127 796-922 1-143 (208)
24 cd04113 Rab4 Rab4 subfamily. 99.6 5.2E-15 1.1E-19 142.8 11.5 114 795-922 1-118 (161)
25 cd04119 RJL RJL (RabJ-Like) su 99.6 6.9E-15 1.5E-19 141.1 12.0 114 795-922 1-123 (168)
26 TIGR00475 selB selenocysteine- 99.6 4.4E-15 9.5E-20 174.9 12.9 112 795-922 1-116 (581)
27 cd04138 H_N_K_Ras_like H-Ras/N 99.6 5.8E-15 1.3E-19 140.8 11.1 113 795-922 2-119 (162)
28 TIGR01394 TypA_BipA GTP-bindin 99.6 3.3E-15 7.1E-20 176.3 11.4 128 792-922 1-129 (594)
29 cd01864 Rab19 Rab19 subfamily. 99.6 6.2E-15 1.3E-19 143.4 11.4 115 794-922 3-121 (165)
30 PRK14845 translation initiatio 99.6 4.5E-15 9.8E-20 182.8 12.9 124 795-922 466-591 (1049)
31 cd01894 EngA1 EngA1 subfamily. 99.6 6.6E-15 1.4E-19 139.7 11.1 109 798-922 1-118 (157)
32 cd01875 RhoG RhoG subfamily. 99.6 7E-15 1.5E-19 148.7 11.7 115 792-921 1-119 (191)
33 cd04106 Rab23_lke Rab23-like s 99.6 8.8E-15 1.9E-19 140.8 11.8 116 795-922 1-119 (162)
34 cd01861 Rab6 Rab6 subfamily. 99.6 1E-14 2.3E-19 140.1 12.1 112 796-921 2-117 (161)
35 cd01862 Rab7 Rab7 subfamily. 99.6 1E-14 2.3E-19 141.3 12.1 114 795-922 1-122 (172)
36 cd04145 M_R_Ras_like M-Ras/R-R 99.6 9.2E-15 2E-19 140.6 11.6 114 794-922 2-120 (164)
37 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.1E-14 2.4E-19 143.1 12.1 116 793-922 1-122 (170)
38 CHL00071 tufA elongation facto 99.6 8.2E-15 1.8E-19 165.7 12.5 125 793-922 11-141 (409)
39 cd01895 EngA2 EngA2 subfamily. 99.6 1.9E-14 4.2E-19 137.8 13.1 113 794-922 2-126 (174)
40 PLN00116 translation elongatio 99.6 4.6E-15 1E-19 181.2 10.9 132 788-923 15-164 (843)
41 cd01866 Rab2 Rab2 subfamily. 99.6 1.3E-14 2.8E-19 142.3 11.9 114 795-922 5-122 (168)
42 cd04132 Rho4_like Rho4-like su 99.6 1.6E-14 3.4E-19 143.6 12.6 114 795-922 1-118 (187)
43 COG1159 Era GTPase [General fu 99.6 8.7E-15 1.9E-19 158.2 11.5 118 790-922 2-127 (298)
44 smart00175 RAB Rab subfamily o 99.6 1.6E-14 3.4E-19 138.7 12.0 114 795-922 1-118 (164)
45 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.8E-14 3.8E-19 146.2 13.0 115 795-922 1-123 (201)
46 cd04122 Rab14 Rab14 subfamily. 99.6 1.5E-14 3.2E-19 141.2 12.0 114 795-922 3-120 (166)
47 PLN03126 Elongation factor Tu; 99.6 6.9E-15 1.5E-19 169.7 11.0 123 794-922 81-210 (478)
48 cd04136 Rap_like Rap-like subf 99.6 1.4E-14 3E-19 139.3 11.4 113 795-922 2-119 (163)
49 cd04140 ARHI_like ARHI subfami 99.6 1.8E-14 3.8E-19 140.7 12.2 113 795-922 2-121 (165)
50 PRK12736 elongation factor Tu; 99.6 1.1E-14 2.3E-19 164.1 12.1 128 794-922 12-141 (394)
51 cd04157 Arl6 Arl6 subfamily. 99.6 1E-14 2.2E-19 140.0 10.0 110 796-922 1-117 (162)
52 smart00173 RAS Ras subfamily o 99.6 1.5E-14 3.3E-19 139.7 11.1 112 796-922 2-118 (164)
53 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.5E-14 3.3E-19 143.7 11.5 114 794-922 2-120 (172)
54 PLN03127 Elongation factor Tu; 99.6 1.4E-14 2.9E-19 166.0 12.6 129 793-922 60-190 (447)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 2E-14 4.3E-19 139.8 11.9 114 795-922 3-120 (166)
56 cd01867 Rab8_Rab10_Rab13_like 99.6 1.7E-14 3.8E-19 141.1 11.5 115 794-922 3-121 (167)
57 cd04127 Rab27A Rab27a subfamil 99.6 1.3E-14 2.7E-19 142.9 10.6 124 795-922 5-133 (180)
58 PTZ00369 Ras-like protein; Pro 99.6 1.4E-14 3.1E-19 145.6 11.1 116 792-922 3-123 (189)
59 cd04154 Arl2 Arl2 subfamily. 99.6 1.5E-14 3.2E-19 142.6 10.9 112 792-922 12-128 (173)
60 cd04163 Era Era subfamily. Er 99.6 3.4E-14 7.4E-19 134.3 12.9 116 792-922 1-124 (168)
61 cd01860 Rab5_related Rab5-rela 99.6 2.1E-14 4.5E-19 138.4 11.6 114 795-922 2-119 (163)
62 cd01897 NOG NOG1 is a nucleola 99.6 3.3E-14 7.1E-19 137.9 12.9 112 795-922 1-126 (168)
63 TIGR03598 GTPase_YsxC ribosome 99.6 2.9E-14 6.3E-19 142.2 12.7 113 791-922 15-142 (179)
64 cd04120 Rab12 Rab12 subfamily. 99.6 2.3E-14 5E-19 147.8 12.4 113 796-922 2-118 (202)
65 cd04170 EF-G_bact Elongation f 99.6 1.2E-14 2.5E-19 154.9 10.3 125 796-922 1-129 (268)
66 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.4E-14 5.1E-19 142.9 11.8 113 795-922 2-118 (175)
67 PRK05433 GTP-binding protein L 99.6 1.5E-14 3.2E-19 171.0 12.0 125 790-922 5-139 (600)
68 cd04133 Rop_like Rop subfamily 99.5 2.1E-14 4.6E-19 144.8 11.3 112 795-921 2-117 (176)
69 COG0480 FusA Translation elong 99.5 6.1E-15 1.3E-19 175.9 8.7 131 789-923 7-142 (697)
70 cd04116 Rab9 Rab9 subfamily. 99.5 3E-14 6.6E-19 139.0 12.0 114 795-922 6-127 (170)
71 smart00174 RHO Rho (Ras homolo 99.5 2E-14 4.4E-19 140.4 10.8 111 797-922 1-115 (174)
72 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 2.6E-14 5.5E-19 144.8 11.8 113 794-921 5-121 (182)
73 PF02421 FeoB_N: Ferrous iron 99.5 1.2E-14 2.6E-19 145.5 9.2 110 795-922 1-118 (156)
74 PRK00741 prfC peptide chain re 99.5 1.4E-14 2.9E-19 169.0 11.2 131 790-922 8-144 (526)
75 cd00154 Rab Rab family. Rab G 99.5 3.5E-14 7.5E-19 133.4 11.9 114 795-922 1-118 (159)
76 cd04175 Rap1 Rap1 subgroup. T 99.5 2.1E-14 4.6E-19 139.2 10.7 113 795-922 2-119 (164)
77 TIGR01393 lepA GTP-binding pro 99.5 2E-14 4.4E-19 169.7 12.5 123 791-922 2-135 (595)
78 cd01865 Rab3 Rab3 subfamily. 99.5 3.3E-14 7.1E-19 138.9 11.9 114 795-922 2-119 (165)
79 PRK10218 GTP-binding protein; 99.5 2.1E-14 4.5E-19 169.8 12.6 128 790-922 3-133 (607)
80 cd00877 Ran Ran (Ras-related n 99.5 2.8E-14 6.1E-19 140.6 11.5 114 795-922 1-117 (166)
81 TIGR00485 EF-Tu translation el 99.5 1.9E-14 4E-19 162.0 11.5 130 792-922 10-141 (394)
82 PLN03071 GTP-binding nuclear p 99.5 3.3E-14 7.1E-19 147.6 12.5 118 791-922 10-130 (219)
83 PRK00089 era GTPase Era; Revie 99.5 3.8E-14 8.3E-19 152.2 13.4 117 791-922 2-126 (292)
84 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.7E-14 3.7E-19 139.7 9.7 115 796-922 1-120 (167)
85 cd01863 Rab18 Rab18 subfamily. 99.5 3E-14 6.4E-19 137.3 11.2 114 795-922 1-119 (161)
86 PRK12735 elongation factor Tu; 99.5 2.4E-14 5.1E-19 161.4 12.1 128 794-922 12-141 (396)
87 cd01871 Rac1_like Rac1-like su 99.5 3.3E-14 7.3E-19 141.7 11.9 112 795-921 2-117 (174)
88 PRK12317 elongation factor 1-a 99.5 1.8E-14 3.9E-19 163.2 11.3 128 794-922 6-152 (425)
89 cd04164 trmE TrmE (MnmE, ThdF, 99.5 5.2E-14 1.1E-18 133.3 12.6 110 795-922 2-120 (157)
90 cd04114 Rab30 Rab30 subfamily. 99.5 3.4E-14 7.5E-19 137.9 11.6 115 794-922 7-125 (169)
91 cd04176 Rap2 Rap2 subgroup. T 99.5 3.2E-14 7E-19 137.6 11.4 113 795-922 2-119 (163)
92 cd01888 eIF2_gamma eIF2-gamma 99.5 3.4E-14 7.3E-19 145.6 12.1 128 795-922 1-150 (203)
93 cd04131 Rnd Rnd subfamily. Th 99.5 3.1E-14 6.7E-19 143.2 11.6 112 795-921 2-117 (178)
94 PRK10512 selenocysteinyl-tRNA- 99.5 3E-14 6.6E-19 168.8 13.3 113 795-922 1-117 (614)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 3.9E-14 8.6E-19 141.9 12.2 116 793-922 2-122 (183)
96 cd04123 Rab21 Rab21 subfamily. 99.5 4.2E-14 9.1E-19 134.9 11.7 113 796-922 2-118 (162)
97 cd00157 Rho Rho (Ras homology) 99.5 3.3E-14 7.1E-19 137.7 11.1 113 795-922 1-117 (171)
98 cd01868 Rab11_like Rab11-like. 99.5 3.9E-14 8.5E-19 137.3 11.5 114 795-922 4-121 (165)
99 cd04101 RabL4 RabL4 (Rab-like4 99.5 4.9E-14 1.1E-18 136.2 12.1 115 795-922 1-120 (164)
100 cd04134 Rho3 Rho3 subfamily. 99.5 2.8E-14 6E-19 143.7 10.7 112 796-922 2-117 (189)
101 cd01883 EF1_alpha Eukaryotic e 99.5 2.7E-14 5.8E-19 148.1 10.7 127 796-922 1-150 (219)
102 TIGR00484 EF-G translation elo 99.5 3.2E-14 6.8E-19 170.6 12.9 132 788-922 6-140 (689)
103 cd01898 Obg Obg subfamily. Th 99.5 4.1E-14 9E-19 137.2 11.3 111 796-922 2-127 (170)
104 cd01879 FeoB Ferrous iron tran 99.5 3.1E-14 6.7E-19 135.9 10.2 106 799-922 1-114 (158)
105 cd04144 Ras2 Ras2 subfamily. 99.5 3.5E-14 7.7E-19 142.8 10.9 112 796-922 1-119 (190)
106 cd00878 Arf_Arl Arf (ADP-ribos 99.5 3.8E-14 8.3E-19 136.4 10.3 108 796-922 1-113 (158)
107 PRK00049 elongation factor Tu; 99.5 3.8E-14 8.2E-19 159.8 12.0 130 792-922 10-141 (396)
108 KOG0084 GTPase Rab1/YPT1, smal 99.5 3.1E-14 6.8E-19 145.9 10.1 116 793-922 8-127 (205)
109 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 5E-14 1.1E-18 138.8 11.3 108 797-922 2-112 (164)
110 cd04110 Rab35 Rab35 subfamily. 99.5 5.7E-14 1.2E-18 142.8 12.0 115 794-922 6-123 (199)
111 PRK12739 elongation factor G; 99.5 2.9E-14 6.2E-19 171.0 11.4 132 789-922 5-138 (691)
112 TIGR00503 prfC peptide chain r 99.5 3.2E-14 6.8E-19 166.0 11.5 131 790-922 9-145 (527)
113 cd01893 Miro1 Miro1 subfamily. 99.5 6.8E-14 1.5E-18 137.0 12.1 111 796-922 2-116 (166)
114 cd04135 Tc10 TC10 subfamily. 99.5 5.6E-14 1.2E-18 137.3 11.3 112 796-922 2-117 (174)
115 TIGR00436 era GTP-binding prot 99.5 8.2E-14 1.8E-18 148.9 13.4 111 795-922 1-120 (270)
116 cd04165 GTPBP1_like GTPBP1-lik 99.5 7.2E-14 1.6E-18 146.5 12.7 127 796-922 1-151 (224)
117 PRK00007 elongation factor G; 99.5 4.5E-14 9.7E-19 169.4 12.6 133 788-922 6-140 (693)
118 cd04112 Rab26 Rab26 subfamily. 99.5 6.4E-14 1.4E-18 141.1 11.8 115 795-922 1-119 (191)
119 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 6.4E-14 1.4E-18 148.0 12.2 115 792-921 11-129 (232)
120 cd04151 Arl1 Arl1 subfamily. 99.5 6.4E-14 1.4E-18 135.7 11.2 108 796-922 1-113 (158)
121 TIGR02034 CysN sulfate adenyly 99.5 3.5E-14 7.6E-19 160.6 10.9 127 796-922 2-146 (406)
122 cd04149 Arf6 Arf6 subfamily. 99.5 5.5E-14 1.2E-18 139.2 11.0 110 794-922 9-123 (168)
123 cd04118 Rab24 Rab24 subfamily. 99.5 8.9E-14 1.9E-18 139.1 12.4 114 796-922 2-118 (193)
124 cd04109 Rab28 Rab28 subfamily. 99.5 7.6E-14 1.6E-18 143.6 12.1 114 796-922 2-122 (215)
125 cd04102 RabL3 RabL3 (Rab-like3 99.5 8.1E-14 1.8E-18 144.1 12.4 118 795-922 1-142 (202)
126 KOG0462 Elongation factor-type 99.5 1.2E-14 2.6E-19 165.8 6.5 125 790-922 58-190 (650)
127 TIGR00231 small_GTP small GTP- 99.5 8.4E-14 1.8E-18 129.4 11.0 113 795-922 2-121 (161)
128 cd04159 Arl10_like Arl10-like 99.5 1E-13 2.3E-18 130.5 11.5 108 797-922 2-114 (159)
129 PRK03003 GTP-binding protein D 99.5 9.4E-14 2E-18 159.8 13.5 112 795-922 39-159 (472)
130 cd04156 ARLTS1 ARLTS1 subfamil 99.5 9.9E-14 2.1E-18 133.5 11.6 109 796-922 1-114 (160)
131 PF01926 MMR_HSR1: 50S ribosom 99.5 1.1E-13 2.4E-18 128.5 11.5 106 796-918 1-116 (116)
132 cd01878 HflX HflX subfamily. 99.5 9.2E-14 2E-18 140.7 11.7 113 794-922 41-166 (204)
133 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.1E-13 2.3E-18 137.5 11.9 113 796-922 2-119 (170)
134 cd04139 RalA_RalB RalA/RalB su 99.5 8.6E-14 1.9E-18 133.3 10.9 112 796-922 2-118 (164)
135 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.1E-13 2.3E-18 136.7 11.7 107 797-922 2-113 (167)
136 cd04150 Arf1_5_like Arf1-Arf5- 99.5 1E-13 2.2E-18 135.8 11.4 109 795-922 1-114 (159)
137 cd01870 RhoA_like RhoA-like su 99.5 1E-13 2.2E-18 135.7 11.3 113 795-922 2-118 (175)
138 smart00177 ARF ARF-like small 99.5 1E-13 2.2E-18 138.0 11.5 110 794-922 13-127 (175)
139 cd04105 SR_beta Signal recogni 99.5 1E-13 2.2E-18 142.5 11.7 113 795-922 1-122 (203)
140 cd01892 Miro2 Miro2 subfamily. 99.5 8.4E-14 1.8E-18 137.9 10.5 115 794-922 4-121 (169)
141 cd04121 Rab40 Rab40 subfamily. 99.5 1.3E-13 2.9E-18 140.6 12.3 115 794-922 6-123 (189)
142 PTZ00141 elongation factor 1- 99.5 6.9E-14 1.5E-18 160.2 11.3 128 794-921 7-157 (446)
143 PRK05124 cysN sulfate adenylyl 99.5 8.1E-14 1.8E-18 160.7 11.9 129 794-922 27-173 (474)
144 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.2E-13 2.5E-18 136.3 11.3 113 795-922 1-117 (173)
145 cd04125 RabA_like RabA-like su 99.5 1.5E-13 3.3E-18 137.4 12.1 114 795-922 1-118 (188)
146 TIGR03594 GTPase_EngA ribosome 99.5 1.3E-13 2.7E-18 155.4 12.8 114 793-922 171-296 (429)
147 PTZ00416 elongation factor 2; 99.5 6E-14 1.3E-18 171.4 10.9 130 789-922 16-157 (836)
148 cd04117 Rab15 Rab15 subfamily. 99.5 1.9E-13 4E-18 133.8 12.0 113 796-922 2-118 (161)
149 TIGR03594 GTPase_EngA ribosome 99.5 1.4E-13 3E-18 155.1 12.7 111 796-922 1-120 (429)
150 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.4E-13 3E-18 136.5 11.2 110 794-922 15-129 (174)
151 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.5E-13 3.2E-18 144.2 12.0 113 795-922 2-118 (222)
152 PRK00093 GTP-binding protein D 99.5 1.9E-13 4E-18 154.6 13.7 112 795-922 2-122 (435)
153 PLN03118 Rab family protein; P 99.5 1.7E-13 3.7E-18 140.2 12.2 114 794-922 14-133 (211)
154 PLN03110 Rab GTPase; Provision 99.5 1.8E-13 3.8E-18 141.6 12.3 114 794-921 12-129 (216)
155 cd00879 Sar1 Sar1 subfamily. 99.5 1.4E-13 3E-18 137.2 11.0 112 792-922 17-133 (190)
156 KOG0394 Ras-related GTPase [Ge 99.5 4.3E-14 9.4E-19 143.7 7.4 113 795-921 10-130 (210)
157 cd04126 Rab20 Rab20 subfamily. 99.5 1.7E-13 3.6E-18 143.5 12.0 109 795-922 1-113 (220)
158 smart00178 SAR Sar1p-like memb 99.5 2E-13 4.3E-18 137.2 12.0 112 792-922 15-131 (184)
159 PLN00223 ADP-ribosylation fact 99.5 2.2E-13 4.7E-18 137.1 12.1 111 793-922 16-131 (181)
160 PRK15494 era GTPase Era; Provi 99.5 2E-13 4.4E-18 151.2 12.9 117 791-922 49-173 (339)
161 cd04147 Ras_dva Ras-dva subfam 99.5 1.4E-13 3E-18 139.7 10.5 112 796-922 1-117 (198)
162 PRK04213 GTP-binding protein; 99.5 2.9E-13 6.3E-18 136.5 12.6 110 793-922 8-143 (201)
163 cd04137 RheB Rheb (Ras Homolog 99.5 1.5E-13 3.2E-18 135.6 10.2 113 795-922 2-119 (180)
164 TIGR00483 EF-1_alpha translati 99.5 1.3E-13 2.9E-18 156.4 11.2 128 794-922 7-154 (426)
165 cd04111 Rab39 Rab39 subfamily. 99.5 1.9E-13 4.1E-18 141.0 11.4 115 795-922 3-122 (211)
166 cd04146 RERG_RasL11_like RERG/ 99.5 1.5E-13 3.4E-18 133.6 10.2 112 796-922 1-119 (165)
167 TIGR03680 eif2g_arch translati 99.5 1.4E-13 3.1E-18 155.6 11.3 131 792-922 2-147 (406)
168 PRK00093 GTP-binding protein D 99.5 2.3E-13 5E-18 153.8 12.8 114 793-922 172-297 (435)
169 cd00880 Era_like Era (E. coli 99.5 3.1E-13 6.8E-18 125.4 11.5 108 799-922 1-117 (163)
170 PLN00043 elongation factor 1-a 99.5 1.4E-13 2.9E-18 157.9 10.9 128 794-922 7-158 (447)
171 cd04158 ARD1 ARD1 subfamily. 99.5 2.1E-13 4.5E-18 134.4 10.6 108 796-922 1-113 (169)
172 KOG0092 GTPase Rab5/YPT51 and 99.5 9.3E-14 2E-18 142.0 8.2 117 792-922 3-123 (200)
173 cd04177 RSR1 RSR1 subgroup. R 99.5 2.4E-13 5.2E-18 133.2 10.8 113 795-922 2-119 (168)
174 PRK13351 elongation factor G; 99.5 1.9E-13 4.2E-18 163.7 12.2 131 790-922 6-138 (687)
175 cd04128 Spg1 Spg1p. Spg1p (se 99.5 2.9E-13 6.4E-18 136.5 11.7 113 795-922 1-117 (182)
176 PLN03108 Rab family protein; P 99.5 3.3E-13 7.1E-18 138.8 12.1 114 795-922 7-124 (210)
177 PF08477 Miro: Miro-like prote 99.5 1.6E-13 3.5E-18 126.6 8.8 113 796-920 1-119 (119)
178 cd00876 Ras Ras family. The R 99.5 2.4E-13 5.3E-18 129.4 10.3 112 796-922 1-117 (160)
179 PTZ00133 ADP-ribosylation fact 99.5 2.7E-13 6E-18 136.3 11.1 110 794-922 17-131 (182)
180 PRK07560 elongation factor EF- 99.5 8.4E-14 1.8E-18 168.0 8.8 130 789-922 17-152 (731)
181 COG1217 TypA Predicted membran 99.5 1.2E-13 2.6E-18 155.4 9.3 126 790-922 3-133 (603)
182 PRK03003 GTP-binding protein D 99.5 3.1E-13 6.6E-18 155.6 12.9 114 793-922 210-335 (472)
183 PLN00023 GTP-binding protein; 99.5 3.5E-13 7.6E-18 148.7 12.5 128 790-922 17-164 (334)
184 COG5256 TEF1 Translation elong 99.5 1.8E-13 3.9E-18 153.1 10.2 127 794-922 7-158 (428)
185 PTZ00327 eukaryotic translatio 99.5 2.6E-13 5.5E-18 156.1 11.5 133 790-922 30-184 (460)
186 TIGR00490 aEF-2 translation el 99.4 1.9E-13 4.2E-18 164.7 10.4 130 789-922 16-151 (720)
187 cd04142 RRP22 RRP22 subfamily. 99.4 5E-13 1.1E-17 136.9 11.9 114 795-922 1-129 (198)
188 cd04143 Rhes_like Rhes_like su 99.4 4E-13 8.7E-18 142.8 11.5 113 795-922 1-126 (247)
189 TIGR00450 mnmE_trmE_thdF tRNA 99.4 5.7E-13 1.2E-17 152.6 13.5 112 794-922 203-323 (442)
190 cd04155 Arl3 Arl3 subfamily. 99.4 5.4E-13 1.2E-17 130.3 11.3 112 792-922 12-128 (173)
191 PRK05506 bifunctional sulfate 99.4 2.2E-13 4.7E-18 161.9 10.0 129 794-922 24-170 (632)
192 COG1160 Predicted GTPases [Gen 99.4 4.3E-13 9.4E-18 151.8 11.8 112 795-922 4-125 (444)
193 TIGR03156 GTP_HflX GTP-binding 99.4 4.8E-13 1E-17 149.1 11.8 112 795-922 190-314 (351)
194 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 4.2E-13 9.1E-18 137.7 10.2 119 790-922 18-141 (221)
195 smart00176 RAN Ran (Ras-relate 99.4 5.4E-13 1.2E-17 137.6 11.0 109 800-922 1-112 (200)
196 PF00071 Ras: Ras family; Int 99.4 6.8E-13 1.5E-17 128.0 10.9 113 796-922 1-117 (162)
197 TIGR02528 EutP ethanolamine ut 99.4 3.3E-13 7.1E-18 128.2 8.5 96 796-922 2-101 (142)
198 PRK00454 engB GTP-binding prot 99.4 1.1E-12 2.4E-17 130.9 12.6 113 793-922 23-148 (196)
199 KOG0098 GTPase Rab2, small G p 99.4 4.4E-13 9.6E-18 136.6 9.7 114 795-922 7-124 (216)
200 cd01881 Obg_like The Obg-like 99.4 8E-13 1.7E-17 128.4 10.5 108 799-922 1-133 (176)
201 PRK09518 bifunctional cytidyla 99.4 1.1E-12 2.4E-17 157.9 13.6 113 794-922 275-396 (712)
202 COG1100 GTPase SAR1 and relate 99.4 1E-12 2.2E-17 133.6 11.2 114 795-922 6-124 (219)
203 PRK04000 translation initiatio 99.4 8.5E-13 1.8E-17 149.8 11.3 130 793-922 8-152 (411)
204 PRK05291 trmE tRNA modificatio 99.4 1.3E-12 2.9E-17 149.8 12.1 111 794-922 215-334 (449)
205 KOG0080 GTPase Rab18, small G 99.4 5E-13 1.1E-17 133.5 7.3 116 792-921 9-129 (209)
206 KOG0087 GTPase Rab11/YPT3, sma 99.4 6.5E-13 1.4E-17 137.6 8.4 113 796-922 16-132 (222)
207 COG4108 PrfC Peptide chain rel 99.4 4.8E-13 1E-17 150.0 7.9 122 797-922 15-146 (528)
208 cd00882 Ras_like_GTPase Ras-li 99.4 1.2E-12 2.6E-17 119.4 9.2 110 799-922 1-115 (157)
209 PRK09518 bifunctional cytidyla 99.4 1.6E-12 3.6E-17 156.5 13.0 113 794-922 450-574 (712)
210 KOG0467 Translation elongation 99.4 4.1E-13 8.9E-18 157.5 7.5 128 788-923 5-138 (887)
211 cd04148 RGK RGK subfamily. Th 99.4 2.1E-12 4.5E-17 134.4 12.0 113 795-922 1-119 (221)
212 PRK11058 GTPase HflX; Provisio 99.4 1.8E-12 3.9E-17 147.9 12.4 113 795-922 198-322 (426)
213 COG0218 Predicted GTPase [Gene 99.4 3E-12 6.6E-17 132.3 12.7 111 793-922 23-148 (200)
214 PTZ00132 GTP-binding nuclear p 99.4 3.1E-12 6.8E-17 131.2 12.8 118 791-922 6-126 (215)
215 KOG0078 GTP-binding protein SE 99.4 1.2E-12 2.6E-17 135.5 9.6 117 792-922 10-130 (207)
216 COG2895 CysN GTPases - Sulfate 99.4 8.1E-13 1.8E-17 145.2 8.5 129 794-922 6-152 (431)
217 PRK12299 obgE GTPase CgtA; Rev 99.4 3.4E-12 7.4E-17 141.6 13.1 111 797-922 161-284 (335)
218 COG1084 Predicted GTPase [Gene 99.4 1.7E-12 3.6E-17 142.0 10.1 126 778-922 155-293 (346)
219 cd04129 Rho2 Rho2 subfamily. 99.4 2.7E-12 5.9E-17 128.9 11.0 111 796-921 3-117 (187)
220 PF00025 Arf: ADP-ribosylation 99.4 2E-12 4.3E-17 129.7 9.9 112 792-922 12-128 (175)
221 KOG0095 GTPase Rab30, small G 99.4 2.4E-12 5.2E-17 127.3 9.7 114 795-922 8-125 (213)
222 cd01876 YihA_EngB The YihA (En 99.4 5.9E-12 1.3E-16 119.6 11.9 109 797-922 2-123 (170)
223 cd01873 RhoBTB RhoBTB subfamil 99.3 4.5E-12 9.8E-17 129.9 11.5 123 795-922 3-133 (195)
224 KOG0468 U5 snRNP-specific prot 99.3 1.3E-12 2.8E-17 151.2 8.2 133 789-923 125-263 (971)
225 COG0481 LepA Membrane GTPase L 99.3 1.1E-12 2.4E-17 148.2 7.0 121 789-922 6-141 (603)
226 TIGR02729 Obg_CgtA Obg family 99.3 5.3E-12 1.1E-16 139.7 11.6 111 796-922 159-286 (329)
227 PRK09554 feoB ferrous iron tra 99.3 7.7E-12 1.7E-16 151.7 13.2 112 793-922 2-125 (772)
228 cd04103 Centaurin_gamma Centau 99.3 7.8E-12 1.7E-16 123.3 10.9 105 796-921 2-111 (158)
229 PRK12298 obgE GTPase CgtA; Rev 99.3 7.7E-12 1.7E-16 141.4 12.2 110 797-922 162-288 (390)
230 COG2229 Predicted GTPase [Gene 99.3 1.3E-11 2.7E-16 125.9 12.1 126 790-922 6-134 (187)
231 KOG0093 GTPase Rab3, small G p 99.3 9.9E-12 2.1E-16 122.9 10.5 112 796-921 23-138 (193)
232 KOG0086 GTPase Rab4, small G p 99.3 5.8E-12 1.3E-16 125.0 8.6 112 796-921 11-126 (214)
233 PRK15467 ethanolamine utilizat 99.3 1.1E-11 2.3E-16 122.7 9.2 98 796-922 3-104 (158)
234 KOG0079 GTP-binding protein H- 99.3 9.1E-12 2E-16 123.2 8.5 112 797-922 11-125 (198)
235 COG0050 TufB GTPases - transla 99.3 7.4E-12 1.6E-16 135.1 8.6 119 795-922 13-141 (394)
236 PRK12296 obgE GTPase CgtA; Rev 99.3 1.7E-11 3.7E-16 142.1 11.8 111 796-922 161-297 (500)
237 PRK12297 obgE GTPase CgtA; Rev 99.3 2.3E-11 5.1E-16 138.8 12.5 110 796-921 160-286 (424)
238 COG1160 Predicted GTPases [Gen 99.3 1.5E-11 3.2E-16 139.5 10.8 114 793-922 177-302 (444)
239 KOG0458 Elongation factor 1 al 99.3 1.2E-11 2.6E-16 142.7 10.0 129 793-922 176-328 (603)
240 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.3E-11 7.2E-16 126.3 12.1 114 787-922 32-146 (225)
241 PF09439 SRPRB: Signal recogni 99.3 1.1E-11 2.3E-16 127.1 8.2 111 794-922 3-125 (181)
242 cd01850 CDC_Septin CDC/Septin. 99.3 3.3E-11 7.2E-16 130.3 12.4 123 795-922 5-156 (276)
243 cd04104 p47_IIGP_like p47 (47- 99.3 2.9E-11 6.2E-16 123.5 11.2 114 795-922 2-120 (197)
244 PRK12740 elongation factor G; 99.3 1.3E-11 2.8E-16 147.6 10.0 123 800-922 1-125 (668)
245 KOG0395 Ras-related GTPase [Ge 99.2 2.2E-11 4.8E-16 125.8 9.0 115 793-922 2-121 (196)
246 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 6E-11 1.3E-15 120.6 11.6 110 796-922 2-129 (196)
247 COG0486 ThdF Predicted GTPase 99.2 4.8E-11 1E-15 135.7 11.3 112 794-922 217-337 (454)
248 KOG0073 GTP-binding ADP-ribosy 99.2 5.8E-11 1.3E-15 119.3 9.6 112 792-922 14-130 (185)
249 KOG0465 Mitochondrial elongati 99.2 1.1E-11 2.4E-16 143.3 4.9 130 790-922 37-169 (721)
250 PF00350 Dynamin_N: Dynamin fa 99.2 1.2E-10 2.6E-15 114.0 11.1 123 797-919 1-168 (168)
251 cd01896 DRG The developmentall 99.2 1.8E-10 3.9E-15 121.4 12.7 81 796-892 2-89 (233)
252 KOG0097 GTPase Rab14, small G 99.2 4.8E-11 1E-15 117.3 7.1 112 797-922 14-129 (215)
253 smart00053 DYNc Dynamin, GTPas 99.1 6.6E-10 1.4E-14 118.5 14.9 132 791-922 23-205 (240)
254 KOG0088 GTPase Rab21, small G 99.1 4.2E-11 9E-16 119.6 5.0 116 792-921 11-130 (218)
255 KOG1423 Ras-like GTPase ERA [C 99.1 1.4E-10 3.1E-15 126.0 9.1 119 789-922 67-198 (379)
256 KOG0461 Selenocysteine-specifi 99.1 1.7E-10 3.7E-15 126.5 9.7 122 794-922 7-135 (522)
257 TIGR00437 feoB ferrous iron tr 99.1 1.7E-10 3.7E-15 136.7 10.4 104 801-922 1-112 (591)
258 COG3276 SelB Selenocysteine-sp 99.1 2.2E-10 4.7E-15 129.5 10.2 112 795-922 1-116 (447)
259 KOG1532 GTPase XAB1, interacts 99.1 6.1E-11 1.3E-15 127.2 5.4 65 858-922 117-194 (366)
260 KOG0464 Elongation factor G [T 99.1 1.5E-11 3.2E-16 136.8 0.7 133 784-922 29-167 (753)
261 KOG0460 Mitochondrial translat 99.1 1.5E-10 3.3E-15 127.0 8.0 115 792-922 52-183 (449)
262 COG0370 FeoB Fe2+ transport sy 99.1 7.3E-10 1.6E-14 130.7 12.0 112 793-922 2-121 (653)
263 PRK09866 hypothetical protein; 99.0 1.2E-09 2.7E-14 128.7 13.5 66 857-922 230-302 (741)
264 COG3596 Predicted GTPase [Gene 99.0 4.5E-10 9.6E-15 121.1 9.0 117 791-922 36-161 (296)
265 PF10662 PduV-EutP: Ethanolami 99.0 3.9E-10 8.5E-15 111.8 7.9 96 796-922 3-102 (143)
266 KOG1490 GTP-binding protein CR 99.0 1.7E-10 3.6E-15 131.5 5.6 126 778-922 155-294 (620)
267 KOG0075 GTP-binding ADP-ribosy 99.0 2.6E-10 5.6E-15 113.0 5.9 110 795-922 21-135 (186)
268 COG5257 GCD11 Translation init 99.0 5.2E-10 1.1E-14 122.3 7.7 127 794-922 10-153 (415)
269 KOG0091 GTPase Rab39, small G 99.0 8.7E-10 1.9E-14 110.9 8.5 115 795-922 9-129 (213)
270 cd01853 Toc34_like Toc34-like 99.0 3.1E-09 6.8E-14 113.7 13.2 116 791-922 28-162 (249)
271 KOG1954 Endocytosis/signaling 99.0 2.7E-09 5.8E-14 118.2 11.9 136 787-922 51-224 (532)
272 KOG0070 GTP-binding ADP-ribosy 99.0 6.1E-10 1.3E-14 113.7 5.7 112 792-922 15-131 (181)
273 KOG3883 Ras family small GTPas 98.9 3.5E-09 7.5E-14 105.7 9.8 117 793-921 8-130 (198)
274 KOG0469 Elongation factor 2 [T 98.9 6.7E-10 1.5E-14 126.1 5.1 131 790-922 17-163 (842)
275 KOG0074 GTP-binding ADP-ribosy 98.9 1.4E-09 3.1E-14 107.2 6.7 113 792-922 15-132 (185)
276 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 5.8E-09 1.2E-13 110.9 11.5 113 796-922 1-124 (232)
277 TIGR00991 3a0901s02IAP34 GTP-b 98.9 9E-09 2E-13 113.5 13.4 117 791-922 35-166 (313)
278 KOG0393 Ras-related small GTPa 98.9 1.6E-09 3.4E-14 112.5 4.9 117 792-922 2-122 (198)
279 PF04548 AIG1: AIG1 family; I 98.9 9.5E-09 2.1E-13 106.7 10.4 110 796-922 2-129 (212)
280 PF00735 Septin: Septin; Inte 98.9 5.4E-09 1.2E-13 113.8 8.7 123 795-922 5-155 (281)
281 KOG1144 Translation initiation 98.8 2.5E-08 5.4E-13 117.5 13.6 77 514-595 223-302 (1064)
282 PF03029 ATP_bind_1: Conserved 98.8 4.2E-09 9E-14 112.1 6.4 65 858-922 92-169 (238)
283 KOG0083 GTPase Rab26/Rab37, sm 98.8 1.1E-09 2.3E-14 107.1 1.7 111 799-922 2-116 (192)
284 KOG1489 Predicted GTP-binding 98.8 1.2E-08 2.6E-13 111.7 9.8 108 797-921 199-324 (366)
285 KOG1191 Mitochondrial GTPase [ 98.8 1.6E-08 3.5E-13 115.6 10.2 112 795-922 269-402 (531)
286 PF05049 IIGP: Interferon-indu 98.8 1.2E-08 2.5E-13 115.1 8.5 112 794-921 35-153 (376)
287 KOG4252 GTP-binding protein [S 98.8 4.4E-09 9.6E-14 107.2 4.6 119 790-922 16-137 (246)
288 KOG1707 Predicted Ras related/ 98.8 2.3E-08 4.9E-13 116.2 10.3 117 790-922 5-128 (625)
289 KOG0081 GTPase Rab27, small G 98.8 1.7E-09 3.7E-14 108.3 0.7 122 796-922 11-137 (219)
290 COG2262 HflX GTPases [General 98.8 3.9E-08 8.5E-13 110.9 11.4 114 794-922 192-317 (411)
291 PRK13768 GTPase; Provisional 98.7 1.3E-08 2.8E-13 108.9 6.8 66 857-922 97-175 (253)
292 KOG0071 GTP-binding ADP-ribosy 98.7 2.8E-08 6.1E-13 98.2 8.5 110 794-922 17-131 (180)
293 COG0536 Obg Predicted GTPase [ 98.7 4.4E-08 9.6E-13 108.4 10.0 109 797-922 162-288 (369)
294 KOG0076 GTP-binding ADP-ribosy 98.7 1.4E-08 3E-13 103.3 5.1 113 795-921 18-138 (197)
295 COG5258 GTPBP1 GTPase [General 98.7 1.1E-08 2.4E-13 113.9 4.1 127 794-922 117-268 (527)
296 KOG0090 Signal recognition par 98.7 4.2E-08 9.1E-13 102.7 7.6 109 795-922 39-158 (238)
297 COG5192 BMS1 GTP-binding prote 98.6 9.7E-08 2.1E-12 109.9 9.4 119 782-922 56-176 (1077)
298 TIGR02836 spore_IV_A stage IV 98.6 2.4E-07 5.2E-12 105.4 12.2 119 795-921 18-192 (492)
299 KOG1143 Predicted translation 98.6 3.8E-08 8.2E-13 109.3 5.6 128 792-922 165-316 (591)
300 cd01899 Ygr210 Ygr210 subfamil 98.6 8.8E-08 1.9E-12 106.1 8.4 95 797-891 1-110 (318)
301 PTZ00258 GTP-binding protein; 98.6 1.1E-07 2.4E-12 107.9 9.2 100 792-891 19-126 (390)
302 COG5019 CDC3 Septin family pro 98.6 1.6E-07 3.5E-12 104.8 9.6 124 794-922 23-175 (373)
303 TIGR00993 3a0901s04IAP86 chlor 98.6 3.5E-07 7.6E-12 108.7 12.8 113 794-922 118-249 (763)
304 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 8.2E-08 1.8E-12 98.9 6.4 114 794-921 10-126 (216)
305 PTZ00099 rab6; Provisional 98.6 1.6E-07 3.6E-12 95.0 8.5 65 858-922 30-98 (176)
306 PRK09601 GTP-binding protein Y 98.6 1.3E-07 2.8E-12 106.5 8.6 96 795-891 3-107 (364)
307 PRK09602 translation-associate 98.6 1.4E-07 3E-12 107.4 8.6 97 795-891 2-113 (396)
308 KOG0463 GTP-binding protein GP 98.6 5.6E-08 1.2E-12 108.0 5.0 136 787-922 126-286 (641)
309 KOG2655 Septin family protein 98.5 2E-07 4.3E-12 104.5 8.7 120 795-922 22-171 (366)
310 KOG0077 Vesicle coat complex C 98.5 2.3E-07 5E-12 94.0 7.2 111 794-923 20-135 (193)
311 KOG0072 GTP-binding ADP-ribosy 98.5 1.3E-07 2.9E-12 93.8 5.3 111 793-922 17-132 (182)
312 cd01900 YchF YchF subfamily. 98.5 1.9E-07 4.1E-12 101.6 6.4 94 797-891 1-103 (274)
313 KOG2486 Predicted GTPase [Gene 98.5 5.7E-07 1.2E-11 97.5 9.5 112 792-922 134-261 (320)
314 KOG1673 Ras GTPases [General f 98.4 2.6E-07 5.6E-12 92.8 4.9 119 790-923 16-138 (205)
315 COG1163 DRG Predicted GTPase [ 98.3 1.2E-06 2.7E-11 96.6 8.9 84 795-894 64-154 (365)
316 COG0012 Predicted GTPase, prob 98.3 7.3E-07 1.6E-11 100.1 7.1 97 794-891 2-108 (372)
317 cd03112 CobW_like The function 98.3 1.1E-06 2.4E-11 87.6 7.7 63 856-921 86-158 (158)
318 smart00275 G_alpha G protein a 98.3 1E-06 2.2E-11 98.5 8.1 66 857-922 184-264 (342)
319 KOG1547 Septin CDC10 and relat 98.3 1.8E-06 3.8E-11 92.1 8.3 123 794-922 46-197 (336)
320 TIGR00750 lao LAO/AO transport 98.3 1.3E-06 2.7E-11 95.8 6.8 61 855-922 125-185 (300)
321 KOG0466 Translation initiation 98.3 3.7E-07 8E-12 99.6 2.3 140 783-922 27-192 (466)
322 PRK09435 membrane ATPase/prote 98.3 1.6E-06 3.5E-11 96.8 7.4 60 856-922 148-207 (332)
323 cd00066 G-alpha G protein alph 98.3 2.4E-06 5.3E-11 94.5 8.7 66 857-922 161-241 (317)
324 TIGR00073 hypB hydrogenase acc 98.2 9.6E-07 2.1E-11 91.2 4.4 60 856-922 102-161 (207)
325 KOG0410 Predicted GTP binding 98.2 1.7E-06 3.7E-11 95.4 6.0 117 790-921 174-306 (410)
326 COG4917 EutP Ethanolamine util 98.2 1.3E-06 2.8E-11 85.3 4.2 97 796-922 3-103 (148)
327 KOG0459 Polypeptide release fa 98.2 7.7E-07 1.7E-11 100.2 2.8 129 793-921 78-229 (501)
328 TIGR01425 SRP54_euk signal rec 98.1 4.8E-06 1E-10 95.8 8.3 64 856-921 182-251 (429)
329 cd01858 NGP_1 NGP-1. Autoanti 98.1 5.1E-06 1.1E-10 81.9 6.5 26 794-819 102-127 (157)
330 cd01851 GBP Guanylate-binding 98.1 1.8E-05 4E-10 83.5 10.9 85 795-892 8-103 (224)
331 PRK14722 flhF flagellar biosyn 98.1 6.7E-06 1.4E-10 93.3 7.2 25 793-817 136-160 (374)
332 cd04178 Nucleostemin_like Nucl 98.1 7.3E-06 1.6E-10 83.4 6.6 55 794-867 117-172 (172)
333 PF02492 cobW: CobW/HypB/UreG, 98.0 3.9E-06 8.5E-11 85.0 4.4 127 795-922 1-154 (178)
334 TIGR00092 GTP-binding protein 98.0 1E-05 2.2E-10 91.6 7.7 96 795-891 3-108 (368)
335 KOG4423 GTP-binding protein-li 98.0 4.7E-07 1E-11 93.2 -4.0 112 797-921 28-147 (229)
336 COG0523 Putative GTPases (G3E 97.9 3.1E-05 6.7E-10 86.4 9.7 128 795-922 2-158 (323)
337 cd01849 YlqF_related_GTPase Yl 97.9 1.7E-05 3.6E-10 78.2 6.7 56 793-867 99-155 (155)
338 PRK14974 cell division protein 97.9 1.6E-05 3.5E-10 89.1 7.0 63 857-921 223-291 (336)
339 TIGR03597 GTPase_YqeH ribosome 97.9 6.4E-06 1.4E-10 92.7 3.9 107 795-920 155-277 (360)
340 TIGR00064 ftsY signal recognit 97.9 2.3E-05 4.9E-10 85.3 8.0 64 856-921 154-229 (272)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.7E-05 3.7E-10 77.1 6.4 24 796-819 85-108 (141)
342 PF03193 DUF258: Protein of un 97.9 7.2E-06 1.6E-10 83.2 3.7 28 791-818 32-59 (161)
343 cd03115 SRP The signal recogni 97.9 4.6E-05 9.9E-10 76.1 9.0 64 856-922 82-152 (173)
344 KOG3886 GTP-binding protein [S 97.9 1.7E-05 3.7E-10 84.4 5.6 113 795-922 5-129 (295)
345 PRK10416 signal recognition pa 97.9 3.4E-05 7.3E-10 85.8 8.3 64 856-921 196-271 (318)
346 cd01855 YqeH YqeH. YqeH is an 97.9 2.1E-05 4.6E-10 79.7 6.0 26 794-819 127-152 (190)
347 KOG0448 Mitofusin 1 GTPase, in 97.9 5.4E-05 1.2E-09 90.1 10.1 130 792-921 107-273 (749)
348 cd03110 Fer4_NifH_child This p 97.9 0.00015 3.3E-09 72.6 11.9 65 855-921 91-155 (179)
349 KOG0082 G-protein alpha subuni 97.8 3.8E-05 8.2E-10 86.4 8.0 69 854-922 192-275 (354)
350 cd03114 ArgK-like The function 97.8 5E-05 1.1E-09 75.4 8.0 58 856-920 91-148 (148)
351 KOG1491 Predicted GTP-binding 97.8 2.6E-05 5.7E-10 86.8 6.5 99 793-891 19-125 (391)
352 TIGR00101 ureG urease accessor 97.8 4.9E-05 1.1E-09 79.0 8.2 60 856-922 91-150 (199)
353 TIGR03348 VI_IcmF type VI secr 97.8 3.5E-05 7.6E-10 98.5 8.3 116 794-922 111-256 (1169)
354 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.3E-05 7.2E-10 84.3 7.0 57 793-868 120-177 (287)
355 TIGR03596 GTPase_YlqF ribosome 97.8 4.3E-05 9.4E-10 82.8 7.8 56 793-867 117-173 (276)
356 KOG3859 Septins (P-loop GTPase 97.8 2.9E-05 6.3E-10 84.4 6.2 121 791-922 39-189 (406)
357 PF00503 G-alpha: G-protein al 97.8 1.2E-05 2.6E-10 91.0 3.5 67 856-922 235-316 (389)
358 PRK11537 putative GTP-binding 97.8 5.5E-05 1.2E-09 84.2 8.4 128 793-922 3-163 (318)
359 smart00010 small_GTPase Small 97.8 5.7E-05 1.2E-09 69.5 7.2 86 796-921 2-89 (124)
360 PRK00771 signal recognition pa 97.8 5.3E-05 1.1E-09 87.7 8.2 62 857-921 176-244 (437)
361 PRK12727 flagellar biosynthesi 97.8 4.7E-05 1E-09 89.7 7.6 64 855-921 427-496 (559)
362 PRK11889 flhF flagellar biosyn 97.7 8.6E-05 1.9E-09 85.0 8.7 63 857-921 321-389 (436)
363 TIGR02475 CobW cobalamin biosy 97.7 0.00011 2.5E-09 82.3 9.6 25 793-817 3-27 (341)
364 COG3640 CooC CO dehydrogenase 97.7 4.9E-05 1.1E-09 81.3 6.1 62 857-921 134-197 (255)
365 PF00448 SRP54: SRP54-type pro 97.7 3.5E-05 7.7E-10 80.0 4.8 63 857-922 84-153 (196)
366 cd01856 YlqF YlqF. Proteins o 97.7 7.2E-05 1.6E-09 75.0 6.8 26 794-819 115-140 (171)
367 KOG1707 Predicted Ras related/ 97.7 0.00011 2.4E-09 86.3 8.9 110 796-921 427-538 (625)
368 PF03308 ArgK: ArgK protein; 97.7 4.7E-05 1E-09 82.5 5.3 58 856-921 121-179 (266)
369 KOG1534 Putative transcription 97.7 2.7E-05 5.8E-10 82.1 3.2 64 858-922 99-177 (273)
370 COG1161 Predicted GTPases [Gen 97.7 6E-05 1.3E-09 83.9 6.2 57 792-867 130-187 (322)
371 PRK12288 GTPase RsgA; Reviewed 97.6 7E-05 1.5E-09 84.3 5.3 25 795-819 206-230 (347)
372 cd02036 MinD Bacterial cell di 97.6 0.00053 1.2E-08 67.7 10.6 62 858-921 64-126 (179)
373 PRK10867 signal recognition pa 97.5 0.00022 4.7E-09 82.6 8.5 63 856-921 183-252 (433)
374 PRK05703 flhF flagellar biosyn 97.5 0.00029 6.3E-09 81.3 9.4 64 856-921 299-369 (424)
375 PRK12289 GTPase RsgA; Reviewed 97.5 0.00012 2.5E-09 82.8 6.0 26 793-818 171-196 (352)
376 TIGR00959 ffh signal recogniti 97.5 0.00021 4.6E-09 82.6 7.9 63 856-921 182-251 (428)
377 COG1703 ArgK Putative periplas 97.5 0.00018 4E-09 79.3 6.9 58 857-921 144-201 (323)
378 COG1162 Predicted GTPases [Gen 97.5 0.0001 2.2E-09 81.4 5.0 28 790-817 160-187 (301)
379 cd01859 MJ1464 MJ1464. This f 97.5 0.00024 5.1E-09 69.7 6.9 26 793-818 100-125 (156)
380 TIGR00157 ribosome small subun 97.5 0.00016 3.4E-09 77.5 6.0 28 792-819 118-145 (245)
381 PRK12726 flagellar biosynthesi 97.5 0.00027 5.8E-09 80.7 7.9 24 793-816 205-228 (407)
382 PRK13695 putative NTPase; Prov 97.5 0.00046 1E-08 69.3 8.8 57 861-919 76-136 (174)
383 KOG1486 GTP-binding protein DR 97.4 0.00018 3.9E-09 77.6 5.9 82 795-892 63-151 (364)
384 KOG0447 Dynamin-like GTP bindi 97.4 0.00059 1.3E-08 79.6 10.2 66 857-922 412-492 (980)
385 cd02038 FleN-like FleN is a me 97.4 0.00048 1E-08 67.2 8.2 63 857-921 45-109 (139)
386 PRK14721 flhF flagellar biosyn 97.4 0.00048 1E-08 79.5 9.3 24 793-816 190-213 (420)
387 PRK06731 flhF flagellar biosyn 97.4 0.00042 9E-09 75.8 8.2 64 856-921 154-223 (270)
388 PRK12723 flagellar biosynthesi 97.4 0.00049 1.1E-08 78.7 9.0 23 794-816 174-196 (388)
389 PRK12724 flagellar biosynthesi 97.4 0.00037 8E-09 80.4 7.8 24 793-816 222-245 (432)
390 PRK06995 flhF flagellar biosyn 97.4 0.00046 9.9E-09 80.9 8.3 24 794-817 256-279 (484)
391 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.00096 2.1E-08 58.2 8.4 93 797-917 2-99 (99)
392 PRK10463 hydrogenase nickel in 97.3 0.0003 6.5E-09 77.6 6.4 23 794-816 104-126 (290)
393 cd01859 MJ1464 MJ1464. This f 97.3 0.00032 6.9E-09 68.8 5.5 53 870-922 2-54 (156)
394 COG3523 IcmF Type VI protein s 97.3 0.00031 6.7E-09 89.1 6.5 112 797-922 128-269 (1188)
395 PRK14723 flhF flagellar biosyn 97.3 0.00062 1.4E-08 83.4 8.7 23 795-817 186-208 (767)
396 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00036 7.8E-09 76.4 6.0 29 792-820 159-187 (287)
397 cd02037 MRP-like MRP (Multiple 97.3 0.0011 2.4E-08 66.2 9.0 64 856-921 67-133 (169)
398 PRK00098 GTPase RsgA; Reviewed 97.3 0.00044 9.6E-09 76.1 6.4 28 792-819 162-189 (298)
399 KOG1424 Predicted GTP-binding 97.3 0.00017 3.7E-09 83.8 3.2 55 794-867 314-369 (562)
400 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00047 1E-08 67.1 5.6 50 873-922 4-55 (141)
401 KOG2485 Conserved ATP/GTP bind 97.2 0.00049 1.1E-08 76.2 5.9 58 794-867 143-206 (335)
402 KOG3905 Dynein light intermedi 97.2 0.0012 2.6E-08 73.5 8.8 25 794-818 52-76 (473)
403 KOG1533 Predicted GTPase [Gene 97.2 0.00015 3.3E-09 77.6 1.7 66 857-922 97-176 (290)
404 KOG0052 Translation elongation 97.1 0.00022 4.8E-09 80.8 2.3 66 857-922 82-155 (391)
405 cd02042 ParA ParA and ParB of 97.1 0.0018 3.9E-08 59.3 7.9 71 797-892 2-73 (104)
406 PRK13796 GTPase YqeH; Provisio 97.1 0.0006 1.3E-08 77.2 5.8 24 795-818 161-184 (365)
407 PF13401 AAA_22: AAA domain; P 97.1 0.00017 3.7E-09 67.8 0.9 116 795-918 5-125 (131)
408 cd03111 CpaE_like This protein 97.1 0.0024 5.2E-08 59.8 8.3 59 858-918 44-106 (106)
409 KOG1487 GTP-binding protein DR 97.0 0.00065 1.4E-08 73.8 4.8 83 796-894 61-150 (358)
410 COG0378 HypB Ni2+-binding GTPa 97.0 0.00033 7.2E-09 73.3 2.5 22 795-816 14-35 (202)
411 KOG3887 Predicted small GTPase 97.0 0.0011 2.3E-08 71.5 6.3 113 794-922 27-148 (347)
412 PF09547 Spore_IV_A: Stage IV 96.9 0.0038 8.3E-08 72.0 10.1 23 794-816 17-39 (492)
413 PF03266 NTPase_1: NTPase; In 96.9 0.00087 1.9E-08 68.3 4.1 21 796-816 1-21 (168)
414 KOG4181 Uncharacterized conser 96.8 0.0026 5.6E-08 71.4 7.6 23 796-818 190-212 (491)
415 COG1419 FlhF Flagellar GTP-bin 96.8 0.0022 4.8E-08 73.5 7.2 126 794-921 203-350 (407)
416 KOG2743 Cobalamin synthesis pr 96.8 0.0039 8.5E-08 69.0 8.7 134 789-922 52-224 (391)
417 COG1618 Predicted nucleotide k 96.7 0.011 2.3E-07 60.8 10.3 21 795-815 6-26 (179)
418 KOG2484 GTPase [General functi 96.7 0.002 4.2E-08 73.5 5.4 58 792-868 250-308 (435)
419 cd01855 YqeH YqeH. YqeH is an 96.7 0.0022 4.7E-08 65.2 5.1 56 865-922 19-74 (190)
420 TIGR01969 minD_arch cell divis 96.7 0.014 3.1E-07 61.0 11.4 64 856-921 108-172 (251)
421 PF05621 TniB: Bacterial TniB 96.7 0.0052 1.1E-07 68.3 8.3 102 789-918 56-189 (302)
422 cd01856 YlqF YlqF. Proteins o 96.7 0.0018 4E-08 64.9 4.3 57 864-922 2-59 (171)
423 COG0552 FtsY Signal recognitio 96.6 0.0037 8.1E-08 70.1 6.8 26 791-816 136-161 (340)
424 cd01120 RecA-like_NTPases RecA 96.6 0.003 6.4E-08 60.3 5.3 21 797-817 2-22 (165)
425 smart00382 AAA ATPases associa 96.5 0.0081 1.8E-07 54.5 7.4 23 795-817 3-25 (148)
426 PRK13849 putative crown gall t 96.5 0.0084 1.8E-07 64.0 8.2 63 856-920 83-151 (231)
427 TIGR03596 GTPase_YlqF ribosome 96.5 0.0033 7.1E-08 68.4 5.0 56 865-922 5-61 (276)
428 cd02032 Bchl_like This family 96.5 0.016 3.5E-07 62.0 10.2 65 856-921 115-184 (267)
429 PHA02518 ParA-like protein; Pr 96.4 0.01 2.2E-07 60.5 8.1 63 856-920 76-144 (211)
430 TIGR00157 ribosome small subun 96.3 0.0046 1E-07 66.4 5.1 55 868-922 24-80 (245)
431 COG0541 Ffh Signal recognition 96.3 0.011 2.4E-07 68.3 8.0 98 795-893 101-225 (451)
432 KOG0099 G protein subunit Galp 96.3 0.006 1.3E-07 66.6 5.4 66 857-922 202-282 (379)
433 PF01656 CbiA: CobQ/CobB/MinD/ 96.2 0.0035 7.6E-08 62.6 3.5 63 857-921 95-160 (195)
434 TIGR01281 DPOR_bchL light-inde 96.2 0.026 5.7E-07 60.4 10.0 64 856-920 115-183 (268)
435 PF06858 NOG1: Nucleolar GTP-b 96.2 0.014 2.9E-07 50.4 6.1 44 877-920 10-58 (58)
436 cd02117 NifH_like This family 96.1 0.035 7.7E-07 57.7 10.3 66 856-921 116-187 (212)
437 PF03205 MobB: Molybdopterin g 96.1 0.0039 8.5E-08 61.7 2.8 22 795-816 1-22 (140)
438 KOG0446 Vacuolar sorting prote 96.1 0.0034 7.5E-08 76.2 2.8 40 790-829 25-64 (657)
439 PRK09563 rbgA GTPase YlqF; Rev 96.1 0.0056 1.2E-07 67.0 4.2 57 864-922 7-64 (287)
440 PF05783 DLIC: Dynein light in 96.0 0.018 4E-07 67.7 8.5 86 793-893 24-113 (472)
441 TIGR03499 FlhF flagellar biosy 96.0 0.0046 1E-07 67.7 3.0 23 794-816 194-216 (282)
442 PRK11670 antiporter inner memb 96.0 0.028 6.1E-07 64.1 9.4 66 856-921 215-281 (369)
443 PF13671 AAA_33: AAA domain; P 96.0 0.0051 1.1E-07 58.8 2.9 21 796-816 1-21 (143)
444 PRK01889 GTPase RsgA; Reviewed 95.9 0.0071 1.5E-07 68.5 4.4 24 795-818 196-219 (356)
445 KOG0780 Signal recognition par 95.9 0.022 4.8E-07 65.1 7.8 25 792-816 99-123 (483)
446 KOG1029 Endocytic adaptor prot 95.9 0.066 1.4E-06 65.0 12.0 8 912-919 1077-1084(1118)
447 TIGR03371 cellulose_yhjQ cellu 95.9 0.037 8.1E-07 57.9 9.2 62 858-921 116-180 (246)
448 PRK08099 bifunctional DNA-bind 95.8 0.019 4.2E-07 66.1 7.5 37 780-817 206-242 (399)
449 PRK10751 molybdopterin-guanine 95.8 0.037 8E-07 57.2 8.5 25 792-816 4-28 (173)
450 KOG2423 Nucleolar GTPase [Gene 95.7 0.0077 1.7E-07 68.7 3.5 29 791-819 304-332 (572)
451 PF05729 NACHT: NACHT domain 95.7 0.019 4E-07 55.5 5.7 21 796-816 2-22 (166)
452 CHL00072 chlL photochlorophyll 95.7 0.053 1.1E-06 59.8 9.9 64 856-920 115-183 (290)
453 cd01393 recA_like RecA is a b 95.7 0.042 9.2E-07 57.0 8.6 24 794-817 19-42 (226)
454 cd01124 KaiC KaiC is a circadi 95.7 0.017 3.7E-07 57.7 5.5 21 797-817 2-22 (187)
455 PRK11519 tyrosine kinase; Prov 95.6 0.046 1E-06 67.3 10.1 64 857-921 636-700 (719)
456 KOG3022 Predicted ATPase, nucl 95.6 0.028 6E-07 61.9 7.2 62 854-915 154-216 (300)
457 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.013 2.8E-07 63.3 4.6 25 793-817 35-59 (259)
458 PRK13185 chlL protochlorophyll 95.6 0.052 1.1E-06 58.2 9.0 64 856-920 117-185 (270)
459 TIGR01005 eps_transp_fam exopo 95.6 0.029 6.2E-07 69.1 8.0 64 857-921 656-720 (754)
460 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.019 4.2E-07 60.9 5.6 27 793-819 20-46 (237)
461 cd02035 ArsA ArsA ATPase funct 95.5 0.037 8E-07 58.0 7.5 64 857-920 114-181 (217)
462 TIGR03597 GTPase_YqeH ribosome 95.5 0.017 3.6E-07 65.5 5.3 54 867-922 50-103 (360)
463 PRK09841 cryptic autophosphory 95.5 0.061 1.3E-06 66.3 10.4 64 857-921 641-705 (726)
464 PRK04195 replication factor C 95.5 0.038 8.3E-07 64.8 8.3 23 794-816 39-61 (482)
465 cd00009 AAA The AAA+ (ATPases 95.5 0.044 9.6E-07 50.5 7.1 23 795-817 20-42 (151)
466 PF00004 AAA: ATPase family as 95.5 0.046 9.9E-07 51.0 7.2 20 797-816 1-20 (132)
467 TIGR02012 tigrfam_recA protein 95.4 0.023 4.9E-07 63.9 6.0 23 794-816 55-77 (321)
468 PRK00098 GTPase RsgA; Reviewed 95.4 0.022 4.7E-07 62.9 5.6 45 878-922 78-124 (298)
469 KOG2749 mRNA cleavage and poly 95.3 0.053 1.2E-06 61.5 8.3 31 790-820 99-129 (415)
470 PRK12289 GTPase RsgA; Reviewed 95.3 0.022 4.8E-07 64.6 5.3 48 875-922 84-133 (352)
471 PRK09354 recA recombinase A; P 95.3 0.027 5.9E-07 63.9 6.0 23 794-816 60-82 (349)
472 PRK05057 aroK shikimate kinase 95.3 0.023 4.9E-07 57.8 4.8 23 794-816 4-26 (172)
473 PRK04328 hypothetical protein; 95.2 0.033 7.2E-07 59.9 6.2 27 793-819 22-48 (249)
474 COG0563 Adk Adenylate kinase a 95.2 0.022 4.7E-07 58.8 4.5 23 795-817 1-23 (178)
475 cd01122 GP4d_helicase GP4d_hel 95.2 0.037 8E-07 59.2 6.3 23 794-816 30-52 (271)
476 COG1120 FepC ABC-type cobalami 95.1 0.061 1.3E-06 58.9 7.9 24 794-817 28-51 (258)
477 PRK05800 cobU adenosylcobinami 95.1 0.05 1.1E-06 55.6 6.8 21 796-816 3-23 (170)
478 TIGR03420 DnaA_homol_Hda DnaA 95.1 0.044 9.6E-07 56.6 6.4 23 794-816 38-60 (226)
479 PF13479 AAA_24: AAA domain 95.1 0.016 3.5E-07 60.7 3.2 22 793-814 2-23 (213)
480 PRK07261 topology modulation p 95.1 0.026 5.6E-07 57.3 4.6 21 796-816 2-22 (171)
481 PRK08118 topology modulation p 95.1 0.028 6E-07 57.0 4.7 21 796-816 3-23 (167)
482 KOG1029 Endocytic adaptor prot 95.1 0.17 3.6E-06 61.8 11.7 29 515-543 334-362 (1118)
483 PRK04296 thymidine kinase; Pro 95.0 0.14 3E-06 52.9 9.7 39 882-920 78-117 (190)
484 KOG0781 Signal recognition par 95.0 0.027 5.8E-07 65.8 4.9 25 791-815 375-399 (587)
485 PRK06762 hypothetical protein; 94.9 0.06 1.3E-06 53.4 6.6 22 795-816 3-24 (166)
486 PRK07764 DNA polymerase III su 94.9 0.069 1.5E-06 66.8 8.5 118 795-923 38-164 (824)
487 TIGR02858 spore_III_AA stage I 94.9 0.1 2.2E-06 57.3 8.8 24 795-818 112-135 (270)
488 KOG0066 eIF2-interacting prote 94.9 0.13 2.7E-06 59.9 9.7 22 796-817 615-636 (807)
489 PRK01889 GTPase RsgA; Reviewed 94.8 0.046 9.9E-07 62.1 6.2 45 878-922 110-155 (356)
490 PRK05416 glmZ(sRNA)-inactivati 94.8 0.11 2.4E-06 57.5 9.0 20 796-815 8-27 (288)
491 PRK05973 replicative DNA helic 94.8 0.046 9.9E-07 59.1 5.8 25 793-817 63-87 (237)
492 PHA00729 NTP-binding motif con 94.8 0.038 8.3E-07 59.3 5.1 21 796-816 19-39 (226)
493 COG0455 flhG Antiactivator of 94.8 0.15 3.3E-06 55.9 9.7 61 858-920 114-177 (262)
494 PRK14737 gmk guanylate kinase; 94.7 0.068 1.5E-06 55.3 6.6 24 794-817 4-27 (186)
495 PF05879 RHD3: Root hair defec 94.7 0.057 1.2E-06 66.8 7.0 25 800-824 1-25 (742)
496 PF07015 VirC1: VirC1 protein; 94.7 0.066 1.4E-06 57.7 6.6 62 857-920 84-151 (231)
497 PRK13232 nifH nitrogenase redu 94.7 0.11 2.5E-06 55.9 8.5 65 856-920 116-185 (273)
498 COG1116 TauB ABC-type nitrate/ 94.6 0.026 5.5E-07 61.3 3.3 26 793-818 28-53 (248)
499 PTZ00121 MAEBL; Provisional 94.6 0.28 6.1E-06 63.2 12.3 212 387-598 1466-1697(2084)
500 cd00984 DnaB_C DnaB helicase C 94.6 0.055 1.2E-06 56.7 5.6 21 796-816 15-35 (242)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-71 Score=633.31 Aligned_cols=586 Identities=54% Similarity=0.748 Sum_probs=377.8
Q ss_pred cccccccccCCCCCCCcccccccC---CCcccccccCCCCCCC-cccccccccccccCCcccccccccccccccccccCC
Q 002428 278 FTDKKKKSNKGGRMRSSAFDLLEN---EDEDDDEKKDKDEEDE-PIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAP 353 (923)
Q Consensus 278 f~~kkk~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~i~fsgkKk~sk~~~~~~~~~~~~~~~~~~~~~~~~ 353 (923)
|.+|.|+++..+-+.+.+|++|+. ....++...+++.+.. +++|+|.|++.+++...+ + ..|+ -.+.+++
T Consensus 1 ~~kk~KK~k~~kwd~d~~ea~l~~~~~~~~~d~~~~de~~~~~~~~a~s~~kk~~~~g~~~s--~---~~dd-see~e~~ 74 (1064)
T KOG1144|consen 1 FKKKGKKSKSKKWDGDASEALLAELLVATDKDDEEEDEDAKKASTLAFSGAKKKKKKGLKLS--S---PGDD-SEELEEP 74 (1064)
T ss_pred CCCcccccccccccccHHHHHHHHHhcCCCCCChhhccchhhhhhhhccccccccccccccc--C---CCcc-cccccCC
Confidence 556667777666677778888852 2222222223333333 499999998844433332 2 1111 1111111
Q ss_pred ccccccccccccccCCCCccccccccccccchhhhhhhhhhhhhhhhcCcchhhhhccHHHHHHHHHHcCCCCCCcccc-
Q 002428 354 VLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK- 432 (923)
Q Consensus 354 ~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~kkkk~k~k~K~~~~~~~~ed~dk~lael~~~~~~~~~~- 432 (923)
. |+ ......+++..+.++++++++ +++++++.++++|++++|+.++..+.+....
T Consensus 75 e-----~k-----------------~~~ta~~e~~e~~~skkkk~~--K~~kk~~~eE~~d~dkllas~~ek~~~~s~~e 130 (1064)
T KOG1144|consen 75 E-----GK-----------------TKKTAKVEVVETGKSKKKKKK--KKKKKGKAEEEDDLDKLLASLGEKDEPASEKE 130 (1064)
T ss_pred C-----CC-----------------cccccccchhhccccchhhhc--ccccccccccccchHHHhhhcCCCCCccchhh
Confidence 1 11 112223333366666666554 3355567799999999999999887432211
Q ss_pred -ccCCCCCCCCCCCCccccccchhhhhhHHHHHHhhhHHHHHHHHHHHHHHHh--------hhhhcchhhhhhhccCCCC
Q 002428 433 -VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE--------DKQQGKSEAVETKKNDGKS 503 (923)
Q Consensus 433 -~~~~~~~~~~~~~a~~~~~~ee~e~~~aa~kkKKKKKeKekekkaa~~~aaa--------~~~e~~~e~~e~~k~~~k~ 503 (923)
...++ .+.+++.++..+ ....+++.+|+++|+++++.+..++++++- +++.+...+.++.++.++.
T Consensus 131 ~~~~qp-e~va~~eaa~~~----ekkek~~akKkkeKkek~~~~~~~~~a~~~~~~e~ke~~~ek~~~~p~e~ekk~ak~ 205 (1064)
T KOG1144|consen 131 KKEAQP-ENVAPVEAAGEK----EKKEKAAAKKKKEKKEKEKKKEDSAAAAAEKSVEAKEEKKEKSVTEPAEPEKKEAKG 205 (1064)
T ss_pred hhhcCc-cccCCccCCCch----hhHHHHHHhhhhhhhhhhhhhhhhhhccchhhhhHHHHhhhhcccCcccccccchhh
Confidence 11111 222222222211 244455555555555555554432222111 2344455556666777788
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 002428 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTG 583 (923)
Q Consensus 504 k~~~KK~~a~~~~~qe~l~~~keeEE~~kreEEEr~rreEEE~~~~eEeer~~eE~k~~kkekekekke~~KkEGKlLTk 583 (923)
+...++.+++|++||++|+++++++|+++|++||++|+++|+++++++++++++|++++++++++++++++|++|+|||+
T Consensus 206 Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTa 285 (1064)
T KOG1144|consen 206 KKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTA 285 (1064)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcC--CCCCCCCCccccCCccccccccccccccCCCCCcccchhhhHHHHHHHhhh-hhhccc
Q 002428 584 KQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET-LLEVDV 660 (923)
Q Consensus 584 KQKeekar~ea~~~~Lla~G--v~v~~~~~~~~kKk~~y~~kkkk~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~ 660 (923)
+||+++++++++|++||++| +.|+..+ ...+|||||.++|++..++.....++... ...++.+. .+++.+
T Consensus 286 kQK~~~a~aea~l~~ll~sg~~~~va~kd-g~~kKrpiY~nKKk~~rq~~~~~~s~~~~------~~~~~~e~~~~~~~~ 358 (1064)
T KOG1144|consen 286 KQKEEAALAEAFLKQLLASGGGLPVADKD-GDSKKRPIYANKKKKARQKGNDRTSVEKL------GEVEAKENHAGDVGS 358 (1064)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCccc-CCcccCcccccccccccccccchhhhhhc------ccCchhhhccCCCCC
Confidence 99999999999999999997 5555544 34899999999999876655443222111 11111110 011111
Q ss_pred ccchhhhccccccccCCcc-ccCCCCCccccccCCCCchhhhccCccccccccCCCCCccccCCCCChhhhhhhhccCCC
Q 002428 661 GETEKVEEGESLTVEEKPE-IADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPS 739 (923)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~e~~~d~wd~~~~d~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~ 739 (923)
.+.+.++..+.+.+.+... +.++++++.. ..++|++. +++...+++++.++ ..++...++.+....+
T Consensus 359 ~d~~~~~~~e~~~~~e~e~~~~dv~~e~g~------~e~~~~~k----~~~~~~~d~dd~ee--~~~e~~~~e~~e~~~~ 426 (1064)
T KOG1144|consen 359 VDTEEVDLEEDSNTDEKEGTPEDVDQEEGE------EEDDWDAK----VDLAIDGDDDDDEE--ELQEEVDKELKEAEEE 426 (1064)
T ss_pred CcchhhccccccCCcccccCCCChhhhhcc------cchhhhcc----ccccccccccchhh--hhchhhhhcccccccc
Confidence 1222222212222222211 1111111111 12336553 34444454444332 1222222222111100
Q ss_pred CCCccCCchhhccccCCCCCCcchhhhhcccchhhhccCccccCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 740 PRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~rr~~r~~~~l~~~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
... ...+. ........+ ..++..++..+ ++...+........+++++|+|+||||||+++|||.||++|+++||
T Consensus 427 ~e~-s~~~~--~~a~~k~~~-~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNV 500 (1064)
T KOG1144|consen 427 EED-SEKPT--EDAAVKAIS-KVEDAATRTKR--AKIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRGTNV 500 (1064)
T ss_pred hhh-ccccc--ccccccccc-ccchhhhhhhh--cchhccCchhhccccchhcCCceEEEeecccccchHHHHHhhcccc
Confidence 000 00000 000111111 22232222211 1122333344455677899999999999999999999999999999
Q ss_pred ccCCCCcceeecceeeecccccccceeeeccccc--cCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHh
Q 002428 820 QEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 897 (923)
Q Consensus 820 q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~--~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~q 897 (923)
+.++++|||++||++|||..+++.++..+..+.. |..|+|+|||||||++|.+++++++++||++|||||||||+.+|
T Consensus 501 qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepq 580 (1064)
T KOG1144|consen 501 QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQ 580 (1064)
T ss_pred ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcc
Confidence 9999999999999999999999998888877655 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 898 TIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 898 tiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
++++|++|+.+++||||+|||||+||
T Consensus 581 tiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 581 TIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred hhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 99999999999999999999999998
No 2
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.8e-22 Score=225.13 Aligned_cols=119 Identities=56% Similarity=0.868 Sum_probs=112.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..|.|+||||||+++||||||++|+.+++..++++|||+.||+++++.... ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 478999999999999999999999999999999999999999999886532 2356999999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+++|.++...|||+||||++.+|+.+||++.+++++..++||||++||||+.
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP 120 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC
Confidence 9999999999999999999999999999999999999999999999999985
No 3
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.78 E-value=1.2e-18 Score=204.71 Aligned_cols=132 Identities=58% Similarity=0.899 Sum_probs=111.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeee--ccccccCCCCEEEEeCCCCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I--~~~~~~k~~~L~IIDTPGhE 868 (923)
++|+|+|+|+||+++|||||||+|++.++.....+++|++++.++++........... .....+..++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4799999999999999999999999999988888999999999888765432211000 01122344679999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++.++++.+|++|||||+++++.+++++++.++...++|+|||+||+|++
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999888899999999999985
No 4
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.7e-18 Score=203.49 Aligned_cols=132 Identities=60% Similarity=0.887 Sum_probs=111.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccccccccee-eec-cccccCCCCEEEEeCCCCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTR-ELK-ANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~-~I~-~~~~~k~~~L~IIDTPGhE 868 (923)
++|+|+|+|+||+++||||||++|++..+..+..+++|+++|.++++......... .+. ....+..++|+|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 58999999999999999999999999998888889999999998887653321100 000 0122344679999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++.++++.+|++|||||+++++.++++.++.++...++|+|||+||+|++
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 999999999999999999999999999999999999988899999999999984
No 5
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=7e-18 Score=203.24 Aligned_cols=116 Identities=51% Similarity=0.755 Sum_probs=104.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..|.|+|+||||+++||||||++|+..++..++.+++|+.++..++.+. ...|+|||||||..|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~----------------~~~ItfiDTPGhe~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN----------------GGKITFLDTPGHEAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC----------------CEEEEEEECCCCccc
Confidence 5789999999999999999999999999988888999988887554332 123899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++.++++.+|++|||||+.+++.+++.++|.++...++|+|||+||||+.
T Consensus 351 ~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~ 402 (787)
T PRK05306 351 TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP 402 (787)
T ss_pred hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc
Confidence 9999999999999999999999999999999999999999999999999984
No 6
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=1.9e-17 Score=159.76 Aligned_cols=115 Identities=63% Similarity=0.936 Sum_probs=92.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
|.|+|+|++|+|||||+++|+...+.....++++..++...+.... .....+.||||||+..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 5699999999999999999998777655444555554333322210 122459999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||++++...+++.++..+...++|+|||+||+|+.
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 999999999999999998888888888888888899999999999975
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=1.4e-17 Score=195.93 Aligned_cols=116 Identities=51% Similarity=0.762 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.|.|+|+|+||+++|||||+++|++.++..++.+|+|++++..++..... ..|+|||||||+.|.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEAFT 149 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcchh
Confidence 57889999999999999999999999998888889999887655443210 148999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++.++++.+|++|||||+.++..+++.+++.++...++|+|||+||||+.
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP 200 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc
Confidence 999999999999999999999999999999999888899999999999984
No 8
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=7.4e-18 Score=169.61 Aligned_cols=128 Identities=37% Similarity=0.447 Sum_probs=88.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeeccc-c--ccCCCCEEEEeCCCCcch
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELKAN-A--TLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~~~-~--~~k~~~L~IIDTPGhEsf 870 (923)
++|+|+||+++|||||+++|++........+.... .......+....+..+..+... . ......|+|||||||..|
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 45999999999999999999864432111110000 0000111111111111110000 1 123456999999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...+.+++..+|++|||||+..++..++.+++.++...++|+|||+||||++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch
Confidence 9999999999999999999999999999999999999999999999999986
No 9
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.4e-17 Score=185.25 Aligned_cols=116 Identities=45% Similarity=0.728 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.|.|.|.||||++.||||||++|+...+..++.||||+.||+..++...- ..|+|+|||||.-|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G---------------~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG---------------KSITFLDTPGHAAFS 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC---------------CEEEEecCCcHHHHH
Confidence 48999999999999999999999999999999999999999977765411 248999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+|-++...+|+|||||-+-+|+.+||.+.|.+.+..++|+||++||||..
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999963
No 10
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=7e-17 Score=193.37 Aligned_cols=119 Identities=48% Similarity=0.745 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.|.|+|+||||+++||||||++|+..++..+..+|+|+.++...+..... .....|+|||||||..|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~------------~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK------------DENQKIVFLDTPGHEAFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec------------CCceEEEEEECCcHHHHH
Confidence 46788999999999999999999998888777888998887644332110 012459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++.++++.+|++|||||+.+++.++++++|..+...++|+|||+||||+.
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc
Confidence 999999999999999999999999999999999988899999999999984
No 11
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=1.8e-16 Score=151.73 Aligned_cols=113 Identities=35% Similarity=0.516 Sum_probs=81.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++|+|+|++++|||||+++|++... .....+++|..++...+... ....+.||||||+..|.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~~~DtpG~~~~~ 65 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRLGFIDVPGHEKFI 65 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec---------------CCcEEEEEECCChHHHH
Confidence 3689999999999999999986432 11111233333222111100 02358999999999998
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
..+..+++.+|++|||||++++...+....+..+...+. |+|||+||+|+.
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 877888999999999999998777777777666655565 999999999984
No 12
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.66 E-value=5.5e-16 Score=152.08 Aligned_cols=120 Identities=29% Similarity=0.382 Sum_probs=81.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCC---ccee------ecceeeecccccccceeeecc-ccccCCCCEEEEeCCC
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAG---GITQ------QIGATYFPAENIRERTRELKA-NATLKVPGLLVIDTPG 866 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geag---GIT~------qIgat~~p~e~i~ekt~~I~~-~~~~k~~~L~IIDTPG 866 (923)
|+|||++++|||||+++|++........+ .+.. ..+.++.+.. ..+.. ........|+||||||
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~------~~~~~~~~~~~~~~~~l~Dt~G 76 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQT------VRLNYKAKDGQEYLLNLIDTPG 76 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecce------EEEEEecCCCCcEEEEEEECCC
Confidence 99999999999999999987421100000 0000 0011111000 00000 0011224488999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..|..++.+++..+|++|||||++.+...+++..+..+...++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 77 HVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred ChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 99999999999999999999999998887777777766666789999999999974
No 13
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=3.4e-16 Score=164.14 Aligned_cols=120 Identities=29% Similarity=0.437 Sum_probs=86.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeec-c-eeeecccccccceeeeccc-----cccC----------CCC
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-G-ATYFPAENIRERTRELKAN-----ATLK----------VPG 858 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qI-g-at~~p~e~i~ekt~~I~~~-----~~~k----------~~~ 858 (923)
+|+||||+++|||||+++|+...-. +.... + ..+.... ..++.+++... ..|. ...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~------i~~~~~g~~~~~D~~-~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGI------ISEKLAGKARYMDSR-EDEQERGITMKSSAISLYFEYEEEDKADGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC------CccccCCceeeccCC-HHHHHhccccccceEEEEEecCcccccCCCceE
Confidence 3999999999999999999863311 11100 0 0111100 01111111110 1111 345
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|+|||||||..|...+..+++.+|++|||||+..++..++..++..+...++|+|||+||||++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 8999999999999999999999999999999999999999999998888899999999999986
No 14
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=6.8e-16 Score=155.69 Aligned_cols=126 Identities=29% Similarity=0.353 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CccccCCCCcceeecceeeecccccccceeee-ccccccCCCCEEEEeCCCCc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGEAGGITQQIGATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg--tnVq~geagGIT~qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhE 868 (923)
+|+ |+|+|++++|||||+++|++ ..+.... .+...+ ..+.+.......+... .....+....+.|||||||.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~--~~~~~~-~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENE--EVEERV-MDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccC--cccccc-cccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 455 99999999999999999986 2222110 000000 0000000000000000 00112233458999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++..+++.+|++|||||++++...++..++..+...++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 77 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999999999999999999998777777777777777789999999999984
No 15
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=6.5e-16 Score=158.61 Aligned_cols=127 Identities=29% Similarity=0.286 Sum_probs=88.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhhH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
++|+|+||+++|||||+++|++.....+....... ....+.+....+..+.... ....+....++|||||||..|...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKY-DEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhccccccccc-ccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 56999999999999999999864211111000000 0001111111111111110 011223356899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
+.+++..+|++|||||+..++..++..++.++...++| +|||+||+|++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999997 78999999985
No 16
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.64 E-value=7.7e-16 Score=165.25 Aligned_cols=129 Identities=26% Similarity=0.350 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee--eccee---eecccccccceeee-ccccccCCCCEEEEeCC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGAT---YFPAENIRERTREL-KANATLKVPGLLVIDTP 865 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~--qIgat---~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTP 865 (923)
+|| |+|+||+|+|||||+++|+...-.....+.+.. ..+.+ +.+....+..+... .....+....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 455 999999999999999999863221111111100 01111 11111111111011 11233445679999999
Q ss_pred CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 866 GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||..|...+..+++.+|++|||||++.++..++..++.++...++|+|||+||+|+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999888889999999999999999988888888888888899999999999974
No 17
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.63 E-value=1.2e-15 Score=149.43 Aligned_cols=126 Identities=33% Similarity=0.388 Sum_probs=86.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeee-ccccccCCCCEEEEeCCCCcchhhHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
+|+|+|.+|+|||||+|+|++..+........+..+ ............+... .....+....++||||||+..|...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF-LDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc-ccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHH
Confidence 389999999999999999998665432211111000 0000000000000000 00111223469999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+.++...+...++..+...+.|++||+||+|++
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 999999999999999999888888888888877899999999999985
No 18
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.62 E-value=3.1e-15 Score=146.04 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|+...+..... ++++..+..... .+ ......|.||||||++.|..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~~~~~~~~~~~~------~~----~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL----STYALTLYKHNA------KF----EGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC----CceeeEEEEEEE------EE----CCEEEEEEEEeCCCchhhhhhh
Confidence 369999999999999999999876643211 111111111000 00 0111348899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||++++.....+ .++..+... ++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999999999999999875544333 344444443 68999999999973
No 19
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.61 E-value=2.5e-15 Score=161.63 Aligned_cols=127 Identities=27% Similarity=0.266 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceee-cceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhhH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-IGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~q-Igat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
+|+|+||+|+|||||+++|+...-.....+.+... ....+.+....+..+.... ....+....++|||||||..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 38999999999999999998522111110111110 0011222221211111110 112344567999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.++++.+|++|||||+..++..++..++.++...++|+|||+||+|+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999984
No 20
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.61 E-value=4.1e-15 Score=152.96 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=84.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc---c-------ccCCCCEEEEeCCC
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN---A-------TLKVPGLLVIDTPG 866 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~---~-------~~k~~~L~IIDTPG 866 (923)
|+|+||+|+|||||+++|+.........+ ..+.+...+.........+++... . ......|+||||||
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~--~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSG--KDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccc--cccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 89999999999999999987543321100 001111111000000001111100 0 01124589999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..|...+..++..+|++|+|||+.++...++..++..+...++|+|||+||+|++
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999888887777777777789999999999985
No 21
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.60 E-value=3.6e-15 Score=150.21 Aligned_cols=126 Identities=28% Similarity=0.424 Sum_probs=84.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC-------ccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt-------nVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
++|+|+|++++|||||+++|++. .......+++|..++...+......... ...........|+|||||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~DtpG~ 78 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLR--ELINPGEENLQITLVDCPGH 78 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccccccc--ccccccccCceEEEEECCCc
Confidence 46999999999999999999863 1111112334444333222211000000 00001122356999999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..|......+++.+|++|||||+..+...++...+..+...++|+|||+||+|++
T Consensus 79 ~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 79 ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 8877777777888999999999999887777766666665688999999999985
No 22
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.60 E-value=2.7e-15 Score=158.34 Aligned_cols=127 Identities=28% Similarity=0.296 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeec-ceeeecccccccceeee-ccccccCCCCEEEEeCCCCcchhhH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qI-gat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
+|+|+||+|+|||||+++|+...-.....+.+.... ...+.+....+..+... .....+....|+|||||||..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 389999999999999999986432111111111000 00111111111111100 0112344557999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+..++..++..++.++...++|+|||+||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 9999999999999999999999999999999988899999999999985
No 23
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=3.2e-15 Score=153.62 Aligned_cols=127 Identities=25% Similarity=0.308 Sum_probs=82.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccC--C-------CCccee-----ecceeeecccccccceeeec-cccccCCCCEE
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG--E-------AGGITQ-----QIGATYFPAENIRERTRELK-ANATLKVPGLL 860 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~g--e-------agGIT~-----qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~ 860 (923)
+|+||||+|+|||||+++|+...-... . ..+.+. .....+.+....+..++... ....+....|+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986321100 0 000000 00001111111111111110 11223345699
Q ss_pred EEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 861 IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
|||||||..|...+..++..+|++|||||++.++..++..++.++...++| +|||+||+|++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 999999999988788889999999999999998888887777777777765 78899999985
No 24
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.60 E-value=5.2e-15 Score=142.82 Aligned_cols=114 Identities=25% Similarity=0.218 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||++++|||||+++|++..+.....+.++..+....+... .....|.||||||+..|..++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG--------------GKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC--------------CEEEEEEEEECcchHHHHHhH
Confidence 369999999999999999999876643322222211111111100 111348999999999999988
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHH---HHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNL---LKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~l---Lkk~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. ++.. +...++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99999999999999999854443332 2232 233478999999999984
No 25
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.59 E-value=6.9e-15 Score=141.12 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=77.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++++|||||+++|++..+..... +.++..+.... +.. ......|.||||||+..|..++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~----~t~~~~~~~~~--------~~~--~~~~~~l~i~Dt~G~~~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL----PTIGIDYGVKK--------VSV--RNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CccceeEEEEE--------EEE--CCeEEEEEEEECCccHHHHHHH
Confidence 469999999999999999999877653221 22222111100 000 0011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh--------cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--------RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk--------~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99999999999999998743322222 2222221 358999999999984
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.59 E-value=4.4e-15 Score=174.90 Aligned_cols=112 Identities=38% Similarity=0.542 Sum_probs=92.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn---Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++|+|+||+++|||||+++|++.. +.....+|+|..++..++.... ..+.|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 479999999999999999998643 2223345667666554443321 238999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..+..++..+|++|||||+.+++.+++.+++.++...++| +|||+||||++
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 9999999999999999999999999999999988888999 99999999985
No 27
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.59 E-value=5.8e-15 Score=140.79 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=76.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||.+|+|||||+++|++..+.... .++++..+.... .+ ......+.||||||++.|..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~-------~~----~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQV-------VI----DGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEE-------EE----CCEEEEEEEEECCCCcchHHHH
Confidence 46999999999999999999987654321 122221111100 00 0011237899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH----hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..++..++++|+|||+.+......+. ++..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999998743323222 222222 3478999999999974
No 28
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=3.3e-15 Score=176.28 Aligned_cols=128 Identities=27% Similarity=0.298 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccccCCCCEEEEeCCCCcch
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf 870 (923)
+|| |+||||+++|||||+++|+...-.....+.++.. ...+.+....+..+.... ....|....|+|||||||.+|
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~-~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAER-VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF 77 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceee-cccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH
Confidence 466 9999999999999999998632110000101110 011111111111111110 112344567999999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...+.++++.+|++|||||+..+...++..+|..+...++|+|||+||||+.
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 129 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999974
No 29
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=6.2e-15 Score=143.43 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|+|+|++|+|||||+++|+...+..... +.++..+.. ..+.. ......++||||||+..|..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~----~t~~~~~~~--------~~~~~--~~~~~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG----NTIGVDFTM--------KTLEI--EGKRVKLQIWDTAGQERFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC----CccceEEEE--------EEEEE--CCEEEEEEEEECCChHHHHHH
Confidence 3569999999999999999998765542211 111111100 00000 000124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++....+.+ .++..+. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999885433332 2333333 2468999999999984
No 30
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=4.5e-15 Score=182.83 Aligned_cols=124 Identities=52% Similarity=0.789 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec--cccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~--~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+-++|++| |||||++|++++++.++++|||++||++++|...+...+..+. ....+..|+|+|||||||+.|..
T Consensus 466 ~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~ 541 (1049)
T PRK14845 466 IANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS 541 (1049)
T ss_pred eeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH
Confidence 33566665 9999999999999999999999999999999875543322221 11234568899999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.++++.+|++|||||+++++.+++.+++..+...++|+|||+||+|++
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 99999999999999999999999999999999998899999999999985
No 31
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.59 E-value=6.6e-15 Score=139.72 Aligned_cols=109 Identities=25% Similarity=0.314 Sum_probs=77.7
Q ss_pred EEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh----
Q 002428 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 872 (923)
Q Consensus 798 ~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n---- 872 (923)
+|+|++|+|||||+++|++.++. ....+++|...... ...+....|.||||||+..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~----------------~~~~~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYG----------------EAEWGGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeE----------------EEEECCeEEEEEECCCCCCchhHHHH
Confidence 48999999999999999976532 11111222111000 0111224589999999887543
Q ss_pred ----HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ----lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+..++..+|++|||||+.++.......++..+...++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 44567788999999999998877777777777888889999999999985
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.59 E-value=7e-15 Score=148.69 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
|+.++|+|||..++|||||+.+|+...+... +.++++..+..... + ......|.||||||++.|.
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~-------~----~~~~~~l~i~Dt~G~e~~~ 65 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTA-------V----DGRTVSLNLWDTAGQEEYD 65 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEE-------E----CCEEEEEEEEECCCchhhh
Confidence 3557899999999999999999998776533 22333322211000 1 0111348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDL 921 (923)
.++..+++.+|++|||||+++..+...+. ++..+.. .++|+|||+||+||
T Consensus 66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhh
Confidence 99999999999999999999855444442 2232322 36899999999998
No 33
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.58 E-value=8.8e-15 Score=140.79 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=78.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+++|||||+++|++..+.... .+.++..+.... ..+. .......|.||||||++.|..++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~------~~~~--~~~~~~~~~i~D~~G~~~~~~~~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY----KKTIGVDFLEKQ------IFLR--QSDEDVRLMLWDTAGQEEFDAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCcEEEEEEEEE------EEEc--CCCCEEEEEEeeCCchHHHHHhH
Confidence 36999999999999999999987664322 222222221110 0010 00112348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|+|||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999999999999998743333332 2222322 378999999999984
No 34
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.58 E-value=1e-14 Score=140.13 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++++||||||++|++..+.....++++..+....+.... ....|.||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED--------------KTVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 599999999999999999998877644333333222111111100 002389999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH-hc--CCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MR--NTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLk-k~--~iP~IVVLNKIDL 921 (923)
.+++.+|++|||+|++++...... .++..+. .. ++|+|||+||+|+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 999999999999999874333332 2333332 23 4899999999998
No 35
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.58 E-value=1e-14 Score=141.30 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|++++|||||+++|++..+... ..+.++..++..... + ......|.||||||+..|..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~------~----~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ----YKATIGADFLTKEVT------V----DDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC----cCCccceEEEEEEEE------E----CCEEEEEEEEeCCChHHHHhHH
Confidence 3699999999999999999998765432 222222222211100 0 0011248899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHH-HH-HHh------cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NL-LKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL-~l-Lkk------~~iP~IVVLNKIDLL 922 (923)
..+++.||++|||||+.++........| .. +.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 9999999999999999875432222221 11 111 268999999999985
No 36
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.58 E-value=9.2e-15 Score=140.64 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|+|+|.+|+|||||+++|++..+... ..+.++..+..... + ......+.||||||+..|..+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~-------~----~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD----YDPTIEDSYTKQCE-------I----DGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc----cCCCccceEEEEEE-------E----CCEEEEEEEEECCCCcchhHH
Confidence 35799999999999999999987654321 11111111111000 0 011134889999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH----HhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lL----kk~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++......+. ++..+ ...++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 999999999999999998743322221 22222 22478999999999974
No 37
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.58 E-value=1.1e-14 Score=143.08 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~- 871 (923)
|.++|+|+|++|+|||||+++|+...+.... .+.++..+.... +.. ......|.||||||++.|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~--------~~~--~~~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERT----EATIGVDFRERT--------VEI--DGERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcc----ccceeEEEEEEE--------EEE--CCeEEEEEEEeCCChHHHHH
Confidence 4567999999999999999999876654321 122222111100 000 0111348999999998886
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHH-HHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL-~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||++.+...+.+..| ..+.. ..+|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 4678889999999999999986555444333 33332 358999999999974
No 38
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=8.2e-15 Score=165.73 Aligned_cols=125 Identities=30% Similarity=0.304 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc-----cccCCCCEEEEeCCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN-----ATLKVPGLLVIDTPGH 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~~~L~IIDTPGh 867 (923)
..++|+|+||+++|||||+++|++.......... ...... .....++.+++... .......|+|||||||
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~----~~~~~~-d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA----KKYDEI-DSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccc----cccccc-cCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 3456999999999999999999964221100000 000000 00001111111111 1122345899999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|...+.+++..+|++|||||+..++..++.+++.++...++| +|||+||+|++
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999 77899999985
No 39
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.58 E-value=1.9e-14 Score=137.81 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~- 871 (923)
.++|+|+|++|+|||||+++|++..+.. ...++++..... ....+....+.||||||+..+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSID----------------VPFEYDGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCcee----------------eEEEECCeeEEEEECCCCccccc
Confidence 4579999999999999999998765321 111111111100 0111122348999999975431
Q ss_pred ----------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 ----------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 ----------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....++..+|++|+|+|+.++.......++..+...+.|+|||+||+|++
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 112345678999999999999888777777777777789999999999985
No 40
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.57 E-value=4.6e-15 Score=181.20 Aligned_cols=132 Identities=24% Similarity=0.281 Sum_probs=92.8
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeec-ccccc-----------
Q 002428 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELK-ANATL----------- 854 (923)
Q Consensus 788 ~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~----------- 854 (923)
.+.++|| |+||||+++|||||+++|+...-. .....+.+. ...+.+....+..+.... ....|
T Consensus 15 ~~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~--~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~ 90 (843)
T PLN00116 15 KKHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR--MTDTRADEAERGITIKSTGISLYYEMTDESLKDFK 90 (843)
T ss_pred CccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCcee--eccCcHHHHHhCCceecceeEEEeecccccccccc
Confidence 3567887 999999999999999999864321 000111000 001111111111110000 00001
Q ss_pred -----CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 855 -----KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 855 -----k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
..+.|+|||||||.+|...+..+++.||++|+|||+..|+..++..+|+++...++|+||++||||+++
T Consensus 91 ~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 91 GERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred cccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccc
Confidence 134589999999999999999999999999999999999999999999999999999999999999973
No 41
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.57 E-value=1.3e-14 Score=142.34 Aligned_cols=114 Identities=24% Similarity=0.192 Sum_probs=78.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|++|+|||||+++|+...+.....+.++..+....+... .....+.||||||++.|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--------------GKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC--------------CEEEEEEEEECCCcHHHHHHH
Confidence 579999999999999999999876543322211111111111100 011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+++....+.+. ++..+.. .++|+|||+||+|+.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999998643333332 3333333 368999999999985
No 42
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=1.6e-14 Score=143.61 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+||||||++|++..+.... .+.++..+....... ......|.||||||++.|..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~----~~t~~~~~~~~i~~~----------~~~~~~l~i~Dt~G~~~~~~~~ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY----VPTVFENYVTNIQGP----------NGKIIELALWDTAGQEEYDRLR 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC----CCeeeeeeEEEEEec----------CCcEEEEEEEECCCchhHHHHH
Confidence 36999999999999999999987664322 222222221110000 0011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHH--hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE--sL~lLk--k~~iP~IVVLNKIDLL 922 (923)
..++..+|+||||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 67 PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 99999999999999998855444432 333332 2368999999999974
No 43
>COG1159 Era GTPase [General function prediction only]
Probab=99.57 E-value=8.7e-15 Score=158.20 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=92.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
..+++..|||||.|++|||||||+|++..+. |++. ...+++..++++.... ..+++||||||+..
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~Kis------IvS~------k~QTTR~~I~GI~t~~---~~QiIfvDTPGih~ 66 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKIS------IVSP------KPQTTRNRIRGIVTTD---NAQIIFVDTPGIHK 66 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceE------eecC------CcchhhhheeEEEEcC---CceEEEEeCCCCCC
Confidence 3578999999999999999999999998765 2222 2334445555554433 46799999999432
Q ss_pred --------hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 --------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 --------f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.......+..||+||||||+.+++......++..++..++|+|+++||+|++
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 12234567789999999999999999988889999988789999999999975
No 44
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.57 E-value=1.6e-14 Score=138.71 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=78.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....|.||||||+..|..++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD--------------GKRVKLQIWDTAGQERFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCChHHHHHHH
Confidence 369999999999999999999876643322222221111111110 011248899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..||++|||||+++....+.+. ++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99999999999999998744333322 3333332 368999999999974
No 45
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=1.8e-14 Score=146.25 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||.+|+||||||++|++..+... +.++++..+.... +... ......|.||||||++.|..++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~--------v~~~-~~~~~~l~l~Dt~G~~~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKV--------IEWD-PNTVVRLQLWDIAGQERFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEE--------EEEC-CCCEEEEEEEECCCchhhhhhH
Confidence 3699999999999999999998765432 1222222211100 0000 0011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH-------hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK-------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk-------k~~iP~IVVLNKIDLL 922 (923)
..+++.++++|||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 99999999999999998754333332 222221 2468999999999984
No 46
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.57 E-value=1.5e-14 Score=141.16 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=77.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||+.|+||||||++|+...+.... .++++..+.... ..+ ......+.||||||+..|..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~------~~~----~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRI------IEV----NGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEE------EEE----CCEEEEEEEEECCCcHHHHHHH
Confidence 46999999999999999999987654321 112222211100 000 0011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999999998754433332 233222 2468999999999984
No 47
>PLN03126 Elongation factor Tu; Provisional
Probab=99.57 E-value=6.9e-15 Score=169.67 Aligned_cols=123 Identities=28% Similarity=0.295 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee-ecccccccceeeeccc-----cccCCCCEEEEeCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY-FPAENIRERTRELKAN-----ATLKVPGLLVIDTPGH 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~-~p~e~i~ekt~~I~~~-----~~~k~~~L~IIDTPGh 867 (923)
.++|+|+||+++|||||+++|++.... +.......+ +......++.+++... ..+....|+|||||||
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~------i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALAS------MGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhh------hccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 456999999999999999999853211 110000000 0000001111111111 1123356999999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|...+..++..+|++|||||+..++..++.+++.++...++| +|||+||+|++
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999 78899999985
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.57 E-value=1.4e-14 Score=139.27 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=76.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+|||||+++|+...+.... .++++..+... ..+ ......+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~-------~~~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQ-------IEV----DGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEE-------EEE----CCEEEEEEEEECCCccccchHH
Confidence 47999999999999999999976653221 11111111100 000 0011237899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999874332222 22233322 368999999999974
No 49
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.57 E-value=1.8e-14 Score=140.74 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=78.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|.+|+|||||+++|++..+... ..+.++..+... +. .......|.||||||+..|..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~---------~~--~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQV---------IS--CSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC----cCCcchheEEEE---------EE--ECCEEEEEEEEECCCCCcchHHH
Confidence 4699999999999999999998766432 222222222110 00 01112348999999999999998
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh------cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk------~~iP~IVVLNKIDLL 922 (923)
..+++.++++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 8899999999999999875443322 23333322 468999999999974
No 50
>PRK12736 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.1e-14 Score=164.08 Aligned_cols=128 Identities=28% Similarity=0.306 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+||+++|||||+++|++.....+........ .....+.+..+..+..+. .........|+|||||||..|..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~-~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYD-SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchh-hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 4569999999999999999998632111100000000 000011111111111110 00111234589999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
.+.+++..+|++|||||+..++..++.+++.++...++| +|||+||+|++
T Consensus 91 ~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 91 NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 989999999999999999999999999999999999999 67899999985
No 51
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.56 E-value=1e-14 Score=140.03 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|.+++|||||+++|++..+.. ..+.++++..+.. + ......+.||||||+..|..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~---~~~~~t~g~~~~~----------~----~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS---QIIVPTVGFNVES----------F----EKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc---ceecCccccceEE----------E----EECCEEEEEEECCCCHhhHHHHH
Confidence 38999999999999999998754321 1122333321110 0 01123489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHH------HhcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLL------KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lL------kk~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||+++....... .++..+ ...++|+|||+||+|+.
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999999999999875432211 222222 12478999999999974
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.56 E-value=1.5e-14 Score=139.72 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|++..+.....+. +...+.. . +. .......|.||||||++.|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t----~~~~~~~-------~--~~--~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPT----IEDSYRK-------Q--IE--IDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCc----hhhhEEE-------E--EE--ECCEEEEEEEEECCCcccchHHHH
Confidence 6999999999999999999986654322111 1111100 0 00 000113488999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHH-HHH----HHhcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNL----LKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEs-L~l----Lkk~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++.-....+.. +.. ....++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999987433222221 122 222368999999999974
No 53
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.56 E-value=1.5e-14 Score=143.70 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|+|||..|+|||||+++|+...+... ..++++..+.... .+ ......|.||||||+..|..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~----~~~t~~~~~~~~~-------~~----~~~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY----HDPTIEDAYKQQA-------RI----DNEPALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC----cCCcccceEEEEE-------EE----CCEEEEEEEEeCCCchhhHHH
Confidence 46799999999999999999998766432 1222222221100 00 001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHH----hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiEs-L~lLk----k~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++..+...... +..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 9999999999999999998766555432 22222 2368999999999973
No 54
>PLN03127 Elongation factor Tu; Provisional
Probab=99.56 E-value=1.4e-14 Score=166.05 Aligned_cols=129 Identities=29% Similarity=0.326 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..++|+|+||+++|||||+++|++.....+....++.. .....+.+..+..++.+. .........|+|||||||..|.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~-~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFD-EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeec-cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 34669999999999999999997431111110000000 000000000011111110 0011122458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..+..++..+|++|||||+..++..++.+++.++...++| +|||+||||++
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 9888888999999999999999999999999999999999 57899999985
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.56 E-value=2e-14 Score=139.76 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=77.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||++|+|||||+++|++..+.....+. ++..+.... +... .....+.||||||+..|..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t----~~~~~~~~~--------~~~~--~~~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIST----IGVDFKIRT--------IELD--GKTIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----cceeEEEEE--------EEEC--CEEEEEEEEECCCcHhHHHHH
Confidence 46999999999999999999987664322222 221111100 0000 001248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 9999999999999999874322222 23333332 368999999999974
No 56
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.56 E-value=1.7e-14 Score=141.07 Aligned_cols=115 Identities=20% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++|+|||||+++|++..+... +.+.++..+.... +.. ......|.||||||+..|..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~----~~~t~~~~~~~~~--------~~~--~~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS----FISTIGIDFKIRT--------IEL--DGKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc----cccCccceEEEEE--------EEE--CCEEEEEEEEeCCchHHHHHH
Confidence 36799999999999999999998766432 2222222211110 000 001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||++++.....+ .++..+.. .++|+|||+||+|+.
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999874433332 22333332 368999999999985
No 57
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.56 E-value=1.3e-14 Score=142.89 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=79.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+|||||+++|+...+.... .++++..+.......................|.||||||++.|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKF----ITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 67999999999999999999887664332 22222222111100000000000000011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++..+...+. ++..+.. .+.|+|||+||+|+.
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 99999999999999998743333332 2333332 368999999999984
No 58
>PTZ00369 Ras-like protein; Provisional
Probab=99.56 E-value=1.4e-14 Score=145.56 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.++|+|||.+|+|||||+++|+...+... +.++++..+... ..+ ......+.||||||+..|.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~----~~~t~~~~~~~~-------~~~----~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE----YDPTIEDSYRKQ-------CVI----DEETCLLDILDTAGQEEYS 67 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcC----cCCchhhEEEEE-------EEE----CCEEEEEEEEeCCCCccch
Confidence 3457899999999999999999998765422 222222222110 001 1111248899999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH----HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL----kk~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||+++..+..... ++..+ ...++|+|||+||+|+.
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999998754322222 22222 22378999999999973
No 59
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.56 E-value=1.5e-14 Score=142.61 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+. .+.++++..+.. + .+....|.||||||+..|.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~~~~~----------~----~~~~~~l~l~D~~G~~~~~ 72 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKT----------L----EYEGYKLNIWDVGGQKTLR 72 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCccccceEE----------E----EECCEEEEEEECCCCHHHH
Confidence 34577999999999999999999876432 122233211100 0 0112348999999999998
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHh-HHHHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~q-tiEsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++...... ...++..+ ...++|+|||+||+|+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 88899999999999999998742221 11222222 22478999999999974
No 60
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.56 E-value=3.4e-14 Score=134.33 Aligned_cols=116 Identities=26% Similarity=0.347 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++..+|+|+|++|+|||||+++|++..+...... ...+ ......+ .......+.||||||+....
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-----~~~~-------~~~~~~~---~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-----PQTT-------RNRIRGI---YTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCC-----CCce-------eceEEEE---EEcCCeEEEEEECCCCCcch
Confidence 3467799999999999999999998654321100 0000 0000000 11112458999999975432
Q ss_pred --------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 --------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....++..+|++|||+|+++........++..+...+.|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 233456888999999999998766666666677777789999999999985
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.56 E-value=2.1e-14 Score=138.38 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=77.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|++++|||||+++|++..+.... .+.++..+...... + ......|.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~------~----~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVN------L----DDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEE------E----CCEEEEEEEEeCCchHHHHHHH
Confidence 57999999999999999999987765321 12222211111000 0 0111348999999999999888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHh-HHHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~q-tiEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++..... ...++..+.. ..+|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88999999999999998642222 2223333332 358999999999974
No 62
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.56 E-value=3.3e-14 Score=137.91 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~--- 871 (923)
|+|+|+|++|+|||||+++|++..+.....++.|..+.... ..+....|+||||||+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~----------------~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH----------------FDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE----------------EccCceEEEEEECCCcCCccccC
Confidence 56999999999999999999987653222112111111000 11122459999999984211
Q ss_pred ------hHHHhhccCCCEEEEEEeCCCCCC---HhHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 ------NLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 ------nlrs~~ls~aDiVILVVDas~gle---~qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.......+.+|++|||||+++... .....++..+... ++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 011112234689999999987432 2223455555544 79999999999984
No 63
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.55 E-value=2.9e-14 Score=142.19 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=80.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc--CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE--GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~--geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
..+.++|+|+|++|+|||||+|+|++..+.. ....+.|..+. ++.. ...|.||||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~-----------------~~~~~liDtpG~~ 75 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN--FFEV-----------------NDGFRLVDLPGYG 75 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE--EEEe-----------------CCcEEEEeCCCCc
Confidence 3566789999999999999999999865221 11122221111 1100 0258999999953
Q ss_pred ----------chhhHHHhhcc---CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 ----------SFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 ----------sf~nlrs~~ls---~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..+...++. .++++|||||+++++......++.++...++|+|||+||+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 23333334443 4689999999999898888888888888899999999999985
No 64
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.55 E-value=2.3e-14 Score=147.84 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=79.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|+|||..|+||||||.+|+...|.... .++++..+..... .+. .....|.||||+|++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~----~~Ti~~~~~~~~i------~~~----~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEAC----KSGVGVDFKIKTV------ELR----GKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcC----CCcceeEEEEEEE------EEC----CEEEEEEEEeCCCchhhHHHHH
Confidence 5899999999999999999987775432 2223322221100 000 0113489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++..+...+. ++..+. ..++|+|||+||+||.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999999865444443 233333 2368999999999984
No 65
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.55 E-value=1.2e-14 Score=154.87 Aligned_cols=125 Identities=24% Similarity=0.273 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecce---eeecccccccceeee-ccccccCCCCEEEEeCCCCcchh
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA---TYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIga---t~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
+|+|+||+|+|||||+++|++........+.+. .+. .+.+....+..+... .....+....|+||||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999986332111111111 111 111111111000000 01122334569999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+..++..+|++|+|||++.+...++..+|..+...++|+|||+||+|+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 889999999999999999999998888888888888899999999999974
No 66
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.55 E-value=2.4e-14 Score=142.94 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=79.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||..|+|||||+.+|+...+... +.++++..+... + .+ ......|.||||||++.|..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~--~-----~~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVT--V-----MI----GGEPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEE--E-----EE----CCEEEEEEEEECCCccchhhhh
Confidence 5699999999999999999998776433 222222222100 0 00 0011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 88999999999999998865444432 3333432 368999999999973
No 67
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.5e-14 Score=171.03 Aligned_cols=125 Identities=32% Similarity=0.458 Sum_probs=88.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeecc-----cccc-----CCCCE
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-----NATL-----KVPGL 859 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~-----~~~~-----k~~~L 859 (923)
.++|| |+||||+++|||||+++|+...-.... . .++..+..... .++.+++.. ...| ..+.|
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~-~----~~~~~~lD~~~-~ErerGiTi~~~~v~~~~~~~dg~~~~l 76 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSE-R----EMKAQVLDSMD-LERERGITIKAQAVRLNYKAKDGETYIL 76 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcc-c----ccccccccCch-HHhhcCCcccccEEEEEEEccCCCcEEE
Confidence 46777 999999999999999999863211000 0 00111111100 000111110 0111 12458
Q ss_pred EEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 860 ~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+|||||||.+|...+.+++..||++|||||+++++..++...|.++...++|+|+|+||+|+.
T Consensus 77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 999999999999999999999999999999999999999988888877899999999999974
No 68
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=2.1e-14 Score=144.80 Aligned_cols=112 Identities=17% Similarity=0.261 Sum_probs=82.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||..++|||+||.+|+...+... +.++++..+..... + ......|.||||+|++.|..++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~-------~----~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANVS-------V----DGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCcceeeeEEEEE-------E----CCEEEEEEEEECCCCccccccc
Confidence 4699999999999999999998777533 22333332221100 1 0012348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCc
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDL 921 (923)
..+++.++++|||||+++..+...+ .|+..+.. .++|+|||+||+||
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhh
Confidence 9999999999999999986665554 35555543 36899999999998
No 69
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.1e-15 Score=175.88 Aligned_cols=131 Identities=31% Similarity=0.282 Sum_probs=96.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee---ecccccccceeeeccc-cccCC-CCEEEEe
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY---FPAENIRERTRELKAN-ATLKV-PGLLVID 863 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~---~p~e~i~ekt~~I~~~-~~~k~-~~L~IID 863 (923)
+.++|| |+|+||.++|||||+.+|+...-.....+.+. -|.++ .+....+..+...... ..|.. +.|+|||
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 567888 99999999999999999986432221111111 11111 2222222212111111 22343 6799999
Q ss_pred CCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 864 TPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
||||.+|.....+.++.||++|+|||+..|+.+|+..+|+++...++|.|+++||||++.
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc
Confidence 999999999999999999999999999999999999999999999999999999999973
No 70
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.55 E-value=3e-14 Score=138.95 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|.+++|||||+++|+...+... ..+.++..+...... + ......|.||||||++.|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~----~~~~~~~~~~~~~~~------~----~~~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ----LFHTIGVEFLNKDLE------V----DGHFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC----cCCceeeEEEEEEEE------E----CCeEEEEEEEeCCChHHHHHhH
Confidence 5699999999999999999997666432 122222222111000 0 0111248899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH-------hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK-------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk-------k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+.+......+. ++..+. ..++|+|||+||+|+.
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999999999999998754333322 222111 2358999999999973
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.55 E-value=2e-14 Score=140.40 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=76.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
|+|||.+|+|||||+++|++..+.....+. +...+.... .+ ......+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~----~~~~~~~~~-------~~----~~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPT----VFENYSADV-------EV----DGKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCc----EEeeeeEEE-------EE----CCEEEEEEEEECCCCcccchhchh
Confidence 689999999999999999987764321111 111111100 00 011134899999999999999989
Q ss_pred hccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 99999999999999874333332 23444433 379999999999974
No 72
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.55 E-value=2.6e-14 Score=144.76 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||..++|||||+++|+...+... +.++++..+..... + ......|.||||+|++.|..+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~~~~~~~~~~-------~----~~~~~~l~iwDtaG~e~~~~~ 69 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFE-------I----DTQRIELSLWDTSGSPYYDNV 69 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeeeeEEEEE-------E----CCEEEEEEEEECCCchhhHhh
Confidence 45799999999999999999998776532 22333322211000 0 011134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCc
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDL 921 (923)
+..+++.+|++|||||+++..+...+ .++..+.. .++|+|||+||+||
T Consensus 70 ~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 70 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhh
Confidence 99999999999999999986555443 33344433 26899999999997
No 73
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.55 E-value=1.2e-14 Score=145.45 Aligned_cols=110 Identities=21% Similarity=0.248 Sum_probs=79.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh--
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n-- 872 (923)
++|+++|.++||||||+|+|++.++..++++|.|.......+.. ....+.||||||..++..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----------------~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----------------GDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----------------TTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----------------cCceEEEEECCCcccCCCCC
Confidence 57999999999999999999999887777888776654333322 123489999999655432
Q ss_pred ----HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ----LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ----lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
....++ ...|++|+|+|+++ ....+.++..+...++|+|||+||+|++
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 222333 68999999999987 3455666777888899999999999974
No 74
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.55 E-value=1.4e-14 Score=169.01 Aligned_cols=131 Identities=26% Similarity=0.361 Sum_probs=91.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce----eecc-eeeecccccccceeeec-cccccCCCCEEEEe
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT----QQIG-ATYFPAENIRERTRELK-ANATLKVPGLLVID 863 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT----~qIg-at~~p~e~i~ekt~~I~-~~~~~k~~~L~IID 863 (923)
.++|| |+||||+|+|||||+++|+...-.....+.+. .... ..+.+....+..+.... ....+....|+|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 35666 99999999999999999985221111111110 0000 11222211111111110 11334456699999
Q ss_pred CCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 864 TPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||||..|...+.++++.+|++|||||++.++..++..++.++...++|+|||+||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 99999999988899999999999999999999999999999988999999999999984
No 75
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.55 E-value=3.5e-14 Score=133.45 Aligned_cols=114 Identities=25% Similarity=0.225 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++++|||||+++|++..+.......+..++....+... .....+.||||||+..|..++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID--------------GKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC--------------CEEEEEEEEecCChHHHHHHH
Confidence 369999999999999999999866653311111111111111100 011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc---CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~---~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+.+....... .++..+... .+|+|||+||+|+.
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 9999999999999999873322222 234444443 48999999999984
No 76
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.55 E-value=2.1e-14 Score=139.24 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+|||||+++|+...+... +.++++..+... +. .......+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~---------~~--~~~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIEDSYRKQ---------VE--VDGQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEE---------EE--ECCEEEEEEEEECCCcccchhHH
Confidence 4699999999999999999986554322 112222111100 00 00111347899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||++........ .++..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 9999999999999998764333222 2233332 2468999999999984
No 77
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.54 E-value=2e-14 Score=169.71 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=87.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeeccc-----ccc-----CCCCE
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELKAN-----ATL-----KVPGL 859 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~~~-----~~~-----k~~~L 859 (923)
++|| |+||||+++|||||+++|+..... ++. .++..+..+.. .++.+++... ..| ..+.|
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~------i~~~~~~~~~~D~~~-~ErerGiTi~~~~v~~~~~~~~g~~~~l 72 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGA------ISEREMREQVLDSMD-LERERGITIKAQAVRLNYKAKDGETYVL 72 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCC------CccccccccccCCCh-HHHhcCCCeeeeEEEEEEEcCCCCEEEE
Confidence 4677 999999999999999999864211 111 11111111100 0001111100 111 11458
Q ss_pred EEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 860 ~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+|||||||..|...+.+++..||++|||||++++...+++..|..+...++|+|+|+||+|+.
T Consensus 73 ~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 73 NLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP 135 (595)
T ss_pred EEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 999999999999999999999999999999999999999888877777889999999999974
No 78
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=3.3e-14 Score=138.88 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||.+|+|||||+++|++..+... +++.++..+.... +.. ......|.||||||+..|..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~--------~~~--~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA----FVSTVGIDFKVKT--------VFR--NDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEE--------EEE--CCEEEEEEEEECCChHHHHHHH
Confidence 4699999999999999999998766432 2222222111100 000 0011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+ .++..+.. ..+|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9999999999999999864332222 23333433 357999999999984
No 79
>PRK10218 GTP-binding protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=169.76 Aligned_cols=128 Identities=30% Similarity=0.295 Sum_probs=91.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--cccCCCCcceeecceeeecccccccceeee-ccccccCCCCEEEEeCCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTREL-KANATLKVPGLLVIDTPG 866 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~Llgtn--Vq~geagGIT~qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPG 866 (923)
.++|+ |+||||+++|||||+++|+... +... ..+......+.+....+..+... .....+....|+||||||
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~---~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSR---AETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccc---cccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 45777 9999999999999999999622 1110 00000011111111111111111 011234445699999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..|...+..+++.+|++|||||+..+...++..+|..+...++|+|||+||||+.
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 99999999999999999999999999999999999999888999999999999974
No 80
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.54 E-value=2.8e-14 Score=140.64 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=77.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|.+|||||||+++|+...+... +.++++..+.... + ........|.||||||++.|..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~--------~--~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLD--------F--HTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEE--------E--EECCEEEEEEEEECCCChhhcccc
Confidence 3699999999999999999987655322 1222222211110 0 000111348999999999998888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHhc--CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+++....+.+. ++..+... ++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 89999999999999998754443332 23333222 69999999999984
No 81
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=1.9e-14 Score=161.98 Aligned_cols=130 Identities=29% Similarity=0.308 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeecc-ccccCCCCEEEEeCCCCcch
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-NATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~-~~~~k~~~L~IIDTPGhEsf 870 (923)
.+.++|+|+||+++|||||+++|++.....+....... ......+.+..+..++.+.. ........++|||||||..|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~-~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAY-DQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhccccccc-ccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 34567999999999999999999853111110000000 00000011111111111100 01112235899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDLL 922 (923)
...+..++..+|++|||||+..++..++.+++.++...++|+| ||+||||++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 9888889999999999999999999999999999998899866 689999985
No 82
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=3.3e-14 Score=147.59 Aligned_cols=118 Identities=22% Similarity=0.211 Sum_probs=83.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
++..++|+|||..||||||||++|+...+... ..++++..+....... ......|.||||||++.|
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~~----------~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT----------NCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEEE----------CCeEEEEEEEECCCchhh
Confidence 37778899999999999999999987666432 2233333322211000 001134899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH--hcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLk--k~~iP~IVVLNKIDLL 922 (923)
..++..+++.++++|||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 999999999999999999999865444332 333332 2368999999999973
No 83
>PRK00089 era GTPase Era; Reviewed
Probab=99.54 E-value=3.8e-14 Score=152.17 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=83.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.+|+..|+|+|++|+|||||+|+|++..+... ++...+ ++..+.++.. .....++||||||+...
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~v-----s~~~~t-------t~~~i~~i~~---~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIV-----SPKPQT-------TRHRIRGIVT---EDDAQIIFVDTPGIHKP 66 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeec-----CCCCCc-------ccccEEEEEE---cCCceEEEEECCCCCCc
Confidence 46888999999999999999999998765321 111111 1111111111 12246999999996543
Q ss_pred h--------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 T--------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~--------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. .....++..+|++|||||+++++......++..+...++|+|||+||+|++
T Consensus 67 ~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 67 KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 2 233456788999999999998777777777777777789999999999986
No 84
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.54 E-value=1.7e-14 Score=139.73 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||++|+|||||+++|++.... ..+++.. .+.++..... .. ..+....+.||||||+..|..++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~---~~~~~~~---~~~~t~~~~~--~~----~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSK---YKGLPPS---KITPTVGLNI--GT----IEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccc---ccCCccc---ccCCccccce--EE----EEECCEEEEEEECCCChhhHHHHH
Confidence 3899999999999999999763321 0111110 0111111100 00 112234589999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHh-HHHHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~q-tiEsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||++...... ...++..+. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 9999999999999997632211 122222222 2479999999999974
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.54 E-value=3e-14 Score=137.30 Aligned_cols=114 Identities=24% Similarity=0.227 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++++|||||+++|++..+... ..+.++..+.... +.. ......+.||||||+..|..++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~--------~~~--~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD----LAATIGVDFKVKT--------LTV--DGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----cCCcccceEEEEE--------EEE--CCEEEEEEEEECCCchhhhhhh
Confidence 4699999999999999999997655322 1222222211110 000 0011248999999999999988
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH----hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++....+.+. ++..+. ..++|++||+||+|+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999999999998743333322 223232 3468999999999985
No 86
>PRK12735 elongation factor Tu; Reviewed
Probab=99.54 E-value=2.4e-14 Score=161.41 Aligned_cols=128 Identities=28% Similarity=0.309 Sum_probs=86.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+||+++|||||+++|++.....+....... ......+.+..+..+..+. .........|+|||||||..|..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~-~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAY-DQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchh-hhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 466999999999999999999863211110000000 0000001111111111110 00112234589999999999998
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDLL 922 (923)
.+..++..+|++|||||+..++..++.+++.++...++|+| ||+||+|++
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 88899999999999999999999999999999988899966 579999985
No 87
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.54 E-value=3.3e-14 Score=141.74 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|..||||||||.+|+...+.....+ +++..+... ..+ ......|.||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~----t~~~~~~~~-------~~~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSAN-------VMV----DGKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC----cceeeeEEE-------EEE----CCEEEEEEEEECCCchhhhhhh
Confidence 5799999999999999999998766432211 121111100 000 0111348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCc
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDL 921 (923)
..++..+|++|||||+++.-+...+. ++..+.. .++|+|||+||+||
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 99999999999999998854444432 3333332 36899999999998
No 88
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.54 E-value=1.8e-14 Score=163.17 Aligned_cols=128 Identities=27% Similarity=0.341 Sum_probs=86.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCC-----------Ccceeecceeeecccccccceeeeccc-----cccCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----------GGITQQIGATYFPAENIRERTRELKAN-----ATLKVP 857 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~gea-----------gGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~~ 857 (923)
.++|+|+||+++|||||+++|++........ .|.. .+...++......++.++++.. ..+...
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~-~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKE-SFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCc-ccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4669999999999999999998533211000 0000 0000000000111111222111 223345
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC--CCCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~--gle~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
.|+|||||||..|...+..++..+|++|||||++. ++..++..++.++...++ |+|||+||+|++
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 69999999999998877788899999999999998 888888888888877776 599999999985
No 89
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.54 E-value=5.2e-14 Score=133.27 Aligned_cols=110 Identities=24% Similarity=0.361 Sum_probs=74.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n- 872 (923)
++|+|+|++|+|||||+++|++..+. ....++++..+.... ..+....++||||||+..+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEES----------------IDIGGIPVRLIDTAGIRETEDE 65 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEE----------------EEeCCEEEEEEECCCcCCCcch
Confidence 46999999999999999999976542 122222222111100 011123589999999765532
Q ss_pred -------HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 -------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 -------lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....+..+|++|||+|+++.........+.. ..+.|+|||+||+|++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 23356788999999999998666655554443 4579999999999985
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=3.4e-14 Score=137.89 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|+...+.......++..+....+... .....+.||||||+..|...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK--------------GEKIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCCcHHHHHH
Confidence 4679999999999999999998765543221111111100000000 00123789999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHH---HHHHhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESL---NLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL---~lLkk~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+.+......+ .++ ..+...++|+|||+||+|+.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 89999999999999999874333222 222 22333468999999999974
No 91
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.54 E-value=3.2e-14 Score=137.59 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=76.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+|||||+++|+...+... +.+.++..+... ..+ ......+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~-------~~~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK----YDPTIEDFYRKE-------IEV----DSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCchhheEEEE-------EEE----CCEEEEEEEEECCCcccccchH
Confidence 4799999999999999999997665432 111111111100 000 0011237899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|+|||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999999999999999874332222 22222322 478999999999973
No 92
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.54 E-value=3.4e-14 Score=145.56 Aligned_cols=128 Identities=24% Similarity=0.300 Sum_probs=84.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeeccccc---cccee------eeccccc--------c
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENI---RERTR------ELKANAT--------L 854 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i---~ekt~------~I~~~~~--------~ 854 (923)
++|+|+||.|+|||||+..|.+... ......+++..++...+..... +.... ....... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3699999999999999999976521 1112234444443333221100 00000 0000000 0
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
....|+|||||||..|...+..++..+|++|||||+.++ ...++..+|..+...++ |+|||+||+|++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 114599999999999999999999999999999999974 56677777777766665 799999999985
No 93
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=3.1e-14 Score=143.22 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||..|+|||||+++|++..+... +.++++..+.... .+. .....|.||||||++.|..++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~-------~~~----~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASF-------EID----EQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEE-------EEC----CEEEEEEEEECCCchhhhhcc
Confidence 4699999999999999999998766532 2222322221100 010 011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCc
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDL 921 (923)
..+++.+|++|||||+++..+...+ .|+..+.. .++|+|||+||+||
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhh
Confidence 9999999999999999986555542 34444433 36899999999997
No 94
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.54 E-value=3e-14 Score=168.77 Aligned_cols=113 Identities=39% Similarity=0.535 Sum_probs=91.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++|+++||+++|||||+++|++.+. ......|+|..++..++.... ...|.|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 4789999999999999999987442 223345777766554432211 1237999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..+..++..+|++|||||+.+++.+++.+++.++...++| +|||+||||++
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 9999999999999999999999999999999999888888 57999999985
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.54 E-value=3.9e-14 Score=141.91 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..++|+|+|++|||||||+++|+...+... .++++..+... .+.. .......|.||||||++.|..
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-----~~t~~~~~~~~--------~~~~-~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-----VPTKGFNTEKI--------KVSL-GNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-----CCccccceeEE--------Eeec-cCCCceEEEEEECCCcHhHHH
Confidence 457799999999999999999987655321 11122111100 0000 011123489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHH----HHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESL----NLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL----~lLkk~~iP~IVVLNKIDLL 922 (923)
++..+++.||++|||||+++....... .++ ......++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 999999999999999999874222111 122 22233478999999999974
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.54 E-value=4.2e-14 Score=134.92 Aligned_cols=113 Identities=23% Similarity=0.193 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|++..+.....+.++..+....+... .....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG--------------GKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC--------------CEEEEEEEEECCchHHHHHhhH
Confidence 69999999999999999999876643221111111111000000 0112389999999999999998
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||++++.....+. ++..+. ..++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 8999999999999998754333332 222222 2368999999999974
No 97
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.54 E-value=3.3e-14 Score=137.73 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|++..+.....+.+... +...... ......+.||||||++.|..++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~----~~~~~~~-----------~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN----YSATVTV-----------DGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee----eEEEEEE-----------CCEEEEEEEEeCCCcccccccc
Confidence 469999999999999999999877632221111111 1100000 0111248999999999888888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 8888999999999999874333222 233333332 59999999999975
No 98
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=3.9e-14 Score=137.26 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=77.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|.+++|||||+++|++..+.....+ .++..+.... +... .....+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~--------~~~~--~~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKS----TIGVEFATRS--------IQID--GKTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----ccceEEEEEE--------EEEC--CEEEEEEEEeCCChHHHHHHH
Confidence 5699999999999999999998766433222 2222111110 0000 011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..++++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999999998643333222 3333322 258999999999974
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.54 E-value=4.9e-14 Score=136.21 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=76.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--ccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt--nVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.+|+|||.+|+|||||+++|+.. .+... ..+.++..+..... .+. ......+.||||||+..|..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~----~~~t~~~~~~~~~~------~~~---~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN----YLMTTGCDFVVKEV------PVD---TDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc----CCCceEEEEEEEEE------EeC---CCCEEEEEEEECCCHHHHHH
Confidence 36999999999999999999864 23222 12222222111000 000 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999999874333222 23333333 368999999999974
No 100
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=2.8e-14 Score=143.71 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|..|+|||||+++|++..+... +.++++..+.... .+ ......|.||||||++.|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~i-------~~----~~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV----YEPTVFENYVHDI-------FV----DGLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc----cCCcceeeeEEEE-------EE----CCEEEEEEEEECCCChhcccccc
Confidence 589999999999999999998776532 2222222221110 00 01113489999999999988988
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||+++....+.+. ++..+.. .++|+|||+||+||.
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 8999999999999999855444332 3444433 368999999999984
No 101
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.53 E-value=2.7e-14 Score=148.09 Aligned_cols=127 Identities=25% Similarity=0.260 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCC-----------cce-eec--ceeeecccccccceeeec-cccccCCCCEE
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAG-----------GIT-QQI--GATYFPAENIRERTRELK-ANATLKVPGLL 860 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geag-----------GIT-~qI--gat~~p~e~i~ekt~~I~-~~~~~k~~~L~ 860 (923)
+|+|+||+++|||||+.+|+...-.....+ |.+ ..+ ...+.+....+..++.+. ....+..+.|+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999975321100000 000 000 001111111111111111 11234456799
Q ss_pred EEeCCCCcchhhHHHhhccCCCEEEEEEeCCC-------CCCHhHHHHHHHHHhcC-CcEEEEEeCCCcC
Q 002428 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVALNKVRFS 922 (923)
Q Consensus 861 IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~-------gle~qtiEsL~lLkk~~-iP~IVVLNKIDLL 922 (923)
|||||||..|...+..+++.+|++|||||++. ++..++..++.++...+ .|+|||+||+|++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999999998888889999999999999988 45567777777776666 5899999999985
No 102
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=3.2e-14 Score=170.58 Aligned_cols=132 Identities=24% Similarity=0.245 Sum_probs=92.6
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceee--cceeeecccccccceeee-ccccccCCCCEEEEeC
Q 002428 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTREL-KANATLKVPGLLVIDT 864 (923)
Q Consensus 788 ~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~q--Igat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDT 864 (923)
.+.++|| |+|+||+++|||||+++|+...-..... +.+.. ....+.+....+..+... .....+....|+||||
T Consensus 6 ~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~-~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 6 DLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKI-GEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred ccccccE--EEEECCCCCCHHHHHHHHHHhCCCcccc-ccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 4567887 9999999999999999998522111000 00000 000111111111111111 1122344567999999
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||..|...+..+++.+|++|||||+..+...++..++.++...++|+|||+||||+.
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT 140 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999899999999999999999999999999999999988899999999999985
No 103
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=4.1e-14 Score=137.19 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCC-CCEEEEeCCCCcc-----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES----- 869 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~-~~L~IIDTPGhEs----- 869 (923)
.|+|||++|+|||||+++|.+.....+..++.|.......+ .+.. ..+.||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~----------------~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVV----------------RVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEE----------------EcCCCCeEEEEecCcccCccccc
Confidence 48999999999999999998755422221222211100000 1112 2599999999642
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCC-CCHhHHH-HHHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIE-SLNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~g-le~qtiE-sL~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+...+.+.+..||++|||||+++. -....+. ++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 222333445679999999999875 2333332 3333332 268999999999974
No 104
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.53 E-value=3.1e-14 Score=135.91 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=72.7
Q ss_pred EEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh------
Q 002428 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN------ 872 (923)
Q Consensus 799 VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n------ 872 (923)
|+|++|+|||||+++|++..+..+..+++|..+....+. +....+.||||||+..|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFK----------------LGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEe----------------eCCeEEEEEECCCccccCCCChhHH
Confidence 589999999999999988654443333333332211111 1123489999999877654
Q ss_pred HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++..++ ..+|++|||+|+.+. .....++..+...++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 344455 489999999999873 233445555666789999999999984
No 105
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=3.5e-14 Score=142.84 Aligned_cols=112 Identities=21% Similarity=0.155 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|.+|+|||||+++|+...+... +.++++..+.... .+. .....|.||||||++.|..++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~----~~~t~~~~~~~~~-------~~~----~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET----YDPTIEDSYRKQV-------VVD----GQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc----CCCchHhhEEEEE-------EEC----CEEEEEEEEECCCchhhHHHHH
Confidence 389999999999999999997665422 1122221111000 000 0112389999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh------cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLkk------~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++..+...+ .++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 999999999999999875433332 22333321 368999999999984
No 106
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.52 E-value=3.8e-14 Score=136.40 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|++..+.. ..+.++..+.. ..+....+.||||||+..|..++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-----~~~t~~~~~~~--------------~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-----TIPTIGFNVET--------------VEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCcCcceEE--------------EEECCEEEEEEECCCChhhHHHHH
Confidence 48999999999999999999876321 11222211110 011124599999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCH-hHHHHHHHH-H---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLL-K---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~-qtiEsL~lL-k---k~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||++..-.. ....++..+ . ..+.|+|||+||+|+.
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 999999999999999874211 122222222 2 3478999999999985
No 107
>PRK00049 elongation factor Tu; Reviewed
Probab=99.52 E-value=3.8e-14 Score=159.85 Aligned_cols=130 Identities=28% Similarity=0.314 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeecc-ccccCCCCEEEEeCCCCcch
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-NATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~-~~~~k~~~L~IIDTPGhEsf 870 (923)
...++|+|+||+++|||||+++|++.....+........ .....+.+..+..+..+.. ........|+|||||||..|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYD-QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchh-hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 345669999999999999999998632111100000000 0000111111111111100 01112345899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDLL 922 (923)
...+..++..+|++|||||+..++..++.+++.++...++|+| ||+||+|++
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 9888899999999999999999999999999999999999976 689999985
No 108
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.1e-14 Score=145.95 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+...|+|||..|||||+|+.+|....++... ..+||..+... .+.. .-....|+||||.|++.|..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~----~sTIGVDf~~r--------t~e~--~gk~iKlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESY----ISTIGVDFKIR--------TVEL--DGKTIKLQIWDTAGQERFRT 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhh----cceeeeEEEEE--------Eeee--cceEEEEEeeeccccHHHhh
Confidence 3456999999999999999999987776542 22333322211 1111 11123599999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
++..||+.+|+||||||++..-++..+. |+..+.. .++|.|+|+||||+.
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 9999999999999999999855544443 3334433 378999999999984
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.52 E-value=5e-14 Score=138.82 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=76.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
|+|||+.|+|||||+++|++..+... +.++++..+. .+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~----------~i----~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSV----------AI----PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceE----------EE----eeCCeEEEEEECCCCcchhHHHHH
Confidence 79999999999999999997655322 2233332111 01 112245899999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHhH-HHHHHHHH--hcCCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQT-IESLNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qt-iEsL~lLk--k~~iP~IVVLNKIDLL 922 (923)
+++.+|++|||||+++...... ..++..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 9999999999999987432222 22333332 2479999999999974
No 110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.52 E-value=5.7e-14 Score=142.76 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++|+||||||++|++..+.... .++++..+... .+.. ......|.||||||+..|..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~----~~t~~~~~~~~--------~~~~--~~~~~~l~l~D~~G~~~~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY----ITTIGVDFKIR--------TVEI--NGERVKLQIWDTAGQERFRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CccccceeEEE--------EEEE--CCEEEEEEEEeCCCchhHHHH
Confidence 357999999999999999999987654221 12222111110 0000 001123889999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
+..+++.++++|||||+++......+ .++..+.. ..+|+|||+||+|+.
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999999999999875433322 23333333 258999999999974
No 111
>PRK12739 elongation factor G; Reviewed
Probab=99.52 E-value=2.9e-14 Score=171.02 Aligned_cols=132 Identities=27% Similarity=0.281 Sum_probs=91.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeec-cccccCCCCEEEEeCCC
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPG 866 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPG 866 (923)
..++|| |+|+||+++|||||+++|+...-.....+.+.. .....+.+....+..+.... ....+....|+||||||
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPG 82 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCC
Confidence 345666 999999999999999999852111000000000 00011111111111111110 11223445699999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..|...+.++++.+|++|||||+..++..++..+|.++...++|+|||+||+|++
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999985
No 112
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=3.2e-14 Score=165.99 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=90.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce-----eecceeeecccccccceeeec-cccccCCCCEEEEe
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGATYFPAENIRERTRELK-ANATLKVPGLLVID 863 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT-----~qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IID 863 (923)
.++|+ |+||||+++|||||+++|+...-.....+.+. ......+.+....+..+.... ....+....|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 34565 99999999999999999874221111111110 000111222211111111110 12334556799999
Q ss_pred CCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 864 TPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||||..|...+.++++.+|++|||||++.++..++..++..+...++|+|||+||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 99999999888889999999999999999999999999988888899999999999984
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.52 E-value=6.8e-14 Score=137.00 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||+.|+|||||+++|+...+... .+.+...+ .. .+ ........+.||||||+..+...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~----------~~--~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TI----------PA--DVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Ee----------ee--eecCCeEEEEEEeCCCchhhhHHHh
Confidence 699999999999999999998766422 11111000 00 00 0011123489999999988877777
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||++++.....+ .++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 788999999999999875554443 23333432 368999999999984
No 114
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.52 E-value=5.6e-14 Score=137.33 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=77.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||++|+|||||+++|++..+.....+ .+...+.... .+ ......+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~----t~~~~~~~~~-------~~----~~~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVP----TVFDHYAVSV-------TV----GGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeeeEEEE-------EE----CCEEEEEEEEeCCCccccccccc
Confidence 699999999999999999998776433222 1111111000 00 00112378999999999999998
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH--HHHHHHH--hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti--EsL~lLk--k~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++....+.+ .++..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 999999999999999875443333 2333333 3478999999999973
No 115
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.52 E-value=8.2e-14 Score=148.90 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=76.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf--- 870 (923)
.+|+|+|.+|+|||||+|+|++.++.. +..+++|.. .+.++.. .....++||||||+...
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-------------~i~~i~~---~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-------------RISGIHT---TGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-------------cEEEEEE---cCCcEEEEEECcCCCCCcch
Confidence 368999999999999999999876532 111222211 1111111 12235899999996532
Q ss_pred -----hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 -----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 -----~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...+..++..+|++|||||+++..... ..++..+...++|+|+|+||+|++
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 112345678999999999999865554 445666777789999999999985
No 116
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.52 E-value=7.2e-14 Score=146.55 Aligned_cols=127 Identities=23% Similarity=0.288 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCC--------------Ccceeecceeeecccccc---cceeeec-----cccc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIR---ERTRELK-----ANAT 853 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~gea--------------gGIT~qIgat~~p~e~i~---ekt~~I~-----~~~~ 853 (923)
+|+|+|+.++|||||+++|....+..+.. .|+|..+....+...... .....+. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999998755543211 122222111111100000 0000000 0011
Q ss_pred cCCCCEEEEeCCCCcchhhHHHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 854 LKVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlrs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....++|||||||..|...+.+++. .+|++|||||+.+++..++..++.++...++|+|||+||+|++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 22345999999999999888777775 7999999999999999999999999999999999999999974
No 117
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=4.5e-14 Score=169.42 Aligned_cols=133 Identities=26% Similarity=0.272 Sum_probs=92.7
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeee-ccccccCCCCEEEEeCC
Q 002428 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTREL-KANATLKVPGLLVIDTP 865 (923)
Q Consensus 788 ~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTP 865 (923)
..+++|| |+|+||+++|||||+++|+...-.....+.+.. .....+.+....+..++.. .....+....|+|||||
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTP 83 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTP 83 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCC
Confidence 3456777 999999999999999999842111000000000 0001111111111111111 01123345679999999
Q ss_pred CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 866 GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||..|...+.++++.+|++|||||+..++..++..+|.++...++|+|||+||+|+.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999989999999999999999999999999999999999999999999999985
No 118
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=6.4e-14 Score=141.10 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=77.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|.+|+|||||+++|+..++..+. +.+.++..+... ...+. .....|.||||||+..|..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~---~~~t~~~~~~~~------~~~~~----~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN---FIATVGIDFRNK------VVTVD----GVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccC---cCCcccceeEEE------EEEEC----CEEEEEEEEeCCCcHHHHHhh
Confidence 36999999999999999999987664321 111111111110 00000 011348999999999999888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+ .++..+. ...+|+|||+||+|+.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 8999999999999999875333222 2333333 2368999999999984
No 119
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=6.4e-14 Score=147.95 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
+..+.|+|||..+||||+||.+|+...|... +.++++..|..... + .-....|.||||+|++.|.
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~----y~pTi~~~~~~~i~-------~----~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPET----YVPTVFENYTAGLE-------T----EEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCC----cCCceeeeeEEEEE-------E----CCEEEEEEEEeCCCchhhH
Confidence 4457799999999999999999998776533 22333332221100 0 0011348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qt--iEsL~lLkk--~~iP~IVVLNKIDL 921 (923)
.++..+++.+|++|||||+++..+... ..|+..+.. .++|+|||+||+||
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 999999999999999999998655443 234444443 36899999999997
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.52 E-value=6.4e-14 Score=135.67 Aligned_cols=108 Identities=24% Similarity=0.196 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++++|||||+++|....+.. ..++++..+. .+ .+....+.||||||+..|..++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~----------~~----~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-----TIPTIGFNVE----------TV----TYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-----cCCccCcCeE----------EE----EECCEEEEEEECCCCHHHHHHHH
Confidence 48999999999999999997654421 1122221110 01 11223589999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHh-HHHHHH-HHHh---cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~q-tiEsL~-lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||++...... ....+. ++.. .++|+|||+||+|+.
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 9999999999999998742211 122222 2222 368999999999974
No 121
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.52 E-value=3.5e-14 Score=160.57 Aligned_cols=127 Identities=25% Similarity=0.349 Sum_probs=87.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCC-----------CCcce-eecceeeecccccccceeeeccc-----cccCCCC
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGIT-QQIGATYFPAENIRERTRELKAN-----ATLKVPG 858 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~ge-----------agGIT-~qIgat~~p~e~i~ekt~~I~~~-----~~~k~~~ 858 (923)
+|+|+||+++|||||+++|+...-.... ..|.+ ..+...++......++.+++... ..+....
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999853211000 01111 01111111111112222222222 1223346
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
|+|||||||..|...+..++..+|++|||||+..++..++.+++.++...++| +|||+||||++
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 99999999999998888899999999999999999999999999888887775 88999999985
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.52 E-value=5.5e-14 Score=139.24 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++++|||||+++|....+.. +.++++..+.. + .+....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-----~~~t~g~~~~~----------~----~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVET----------V----TYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-----ccCCcccceEE----------E----EECCEEEEEEECCCCHHHHHH
Confidence 4679999999999999999998654421 12222221110 0 011234999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHh-HHHHHH-HHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~q-tiEsL~-lLkk---~~iP~IVVLNKIDLL 922 (923)
+..+++.||++|||||+++..... ...++. ++.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 999999999999999998743222 222232 3322 358999999999974
No 123
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.51 E-value=8.9e-14 Score=139.12 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|.+|+||||||++|++..+..+. +.++++..+...... +. .....|.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~------~~----~~~~~l~i~D~~G~~~~~~~~~ 68 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMV------VG----ERVVTLGIWDTAGSERYEAMSR 68 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEE------EC----CEEEEEEEEECCCchhhhhhhH
Confidence 6999999999999999999987664311 222233222111000 00 0012378999999999988888
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 889999999999999874333222 344444433 68999999999974
No 124
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.51 E-value=7.6e-14 Score=143.65 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||.+|+||||||++|++..+.... .++++..++... ..+... ....|.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~----~~T~~~d~~~~~------i~~~~~---~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY----KQTIGLDFFSKR------VTLPGN---LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEE------EEeCCC---CEEEEEEEECCCcHHHHHHHH
Confidence 6899999999999999999987664322 222222221110 000000 113489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh------cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk------~~iP~IVVLNKIDLL 922 (923)
.+++.+|+||||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 9999999999999998743333322 3333322 246899999999984
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.51 E-value=8.1e-14 Score=144.13 Aligned_cols=118 Identities=18% Similarity=0.101 Sum_probs=80.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc-cccCCCCEEEEeCCCCcchhhH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN-ATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~-~~~k~~~L~IIDTPGhEsf~nl 873 (923)
++|+|+|..++|||||+++|++..+.... .++++..+.... + .+... ..-....|.||||+|++.|..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~----~~Tig~~~~~k~-~-----~~~~~~~~~~~~~l~IwDtaG~e~~~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRP----SWTVGCSVDVKH-H-----TYKEGTPEEKTFFVELWDVGGSESVKST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcceeeeEEEEE-E-----EEcCCCCCCcEEEEEEEecCCchhHHHH
Confidence 36999999999999999999987765432 222222111000 0 00000 0001134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----------------------cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----------------------RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----------------------~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++.-+...+. |+..+.. .++|+|||+||+||.
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999999865544443 3333322 368999999999984
No 126
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-14 Score=165.78 Aligned_cols=125 Identities=36% Similarity=0.480 Sum_probs=92.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-----cccccCC---CCEEE
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-----ANATLKV---PGLLV 861 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-----~~~~~k~---~~L~I 861 (923)
+++|| +.||-|++.|||||.++|+... +.+..+.+...+-.....++-++|+ ..+.|.. +.|+|
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~t------g~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELT------GTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHh------CCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 78999 8999999999999999998521 1111111111111111111111221 1122333 66999
Q ss_pred EeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 862 IDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||||||.+|....++.+..|+++|||||+.+|+..||...+.+....+..+|.|+|||||.
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP 190 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.51 E-value=8.4e-14 Score=129.38 Aligned_cols=113 Identities=23% Similarity=0.275 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|++..+.....++++..+....+.... ..+.+.||||||+..+..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDG--------------KTYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECC--------------EEEEEEEEECCCcccchHHH
Confidence 5799999999999999999998775443333333322221111110 00348899999999998888
Q ss_pred HhhccCCCEEEEEEeCCCCCC-------HhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle-------~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++..++++|+++|+...+. .+...++.++ ..++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLR 121 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCC
Confidence 888888888888888765411 1112222222 2278999999999985
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.51 E-value=1e-13 Score=130.52 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=75.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
|+|+|++|+|||||+++|.+..+.... .++++..+... .+....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~--------------~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKV--------------TKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEE--------------EECCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999987654322 12222111110 011134899999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCH-hHHHHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~-qtiEsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
++..+|++|||||++..... ....++..+. ..++|++||+||+|+.
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 99999999999999863221 1122233222 2468999999999974
No 129
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=9.4e-14 Score=159.76 Aligned_cols=112 Identities=23% Similarity=0.323 Sum_probs=82.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
++|+|||.+|||||||+|+|++..+. ....+|+|...... ...+....|.||||||+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~----------------~~~~~~~~~~l~DT~G~~~~~~~ 102 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSY----------------DAEWNGRRFTVVDTGGWEPDAKG 102 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEE----------------EEEECCcEEEEEeCCCcCCcchh
Confidence 67999999999999999999986542 22233333221110 0112223489999999762
Q ss_pred ----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ----f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..++..++..||+||||||++.++......++..+...++|+|||+||+|+.
T Consensus 103 ~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 103 LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 34445667899999999999999888777778888888899999999999974
No 130
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.51 E-value=9.9e-14 Score=133.55 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|++..+... .++++..+. .+... ....|.||||||+..|..++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~----------~~~~~---~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVE----------MLQLE---KHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceE----------EEEeC---CceEEEEEECCCCHhHHHHHH
Confidence 489999999999999999998765321 111211110 01000 123599999999999988888
Q ss_pred hhccCCCEEEEEEeCCCCCCHhH-HHHHH-HHH---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQT-IESLN-LLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qt-iEsL~-lLk---k~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||+++...... ..++. .+. ..++|+|||+||+|+.
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 89999999999999987432111 11222 222 2478999999999973
No 131
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.1e-13 Score=128.54 Aligned_cols=106 Identities=24% Similarity=0.335 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf---- 870 (923)
+|+|+|.+|+|||||+|+|++.+.. .+...+.|..+....+ .+....+.||||||....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~----------------~~~~~~~~~vDtpG~~~~~~~~ 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF----------------EYNNKKFILVDTPGINDGESQD 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE----------------EETTEEEEEEESSSCSSSSHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee----------------eeceeeEEEEeCCCCcccchhh
Confidence 5899999999999999999975432 2222333332211000 112234789999996431
Q ss_pred -----hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeC
Q 002428 871 -----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 918 (923)
Q Consensus 871 -----~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNK 918 (923)
.......+..+|++|||||+.+++......++..|. .+.|+|+|+||
T Consensus 65 ~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 65 NDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 222445568999999999987754555666777776 78999999998
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.50 E-value=9.2e-14 Score=140.67 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch---
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf--- 870 (923)
.++|+|||++|||||||+++|++..+......+.|..+ . +..+... ....++||||||+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~------~------~~~~~~~---~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP------T------TRRLRLP---DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc------e------eEEEEec---CCceEEEeCCCccccCCCH
Confidence 35799999999999999999998654322111111110 0 0001000 1125999999997321
Q ss_pred ------hhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 871 ------TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ------~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
... ...+..+|++|||||++++....... ++.++ ...++|+|||+||+|++
T Consensus 106 ~~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 106 QLVEAFRST-LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred HHHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 111 12356899999999998865444332 22333 33468999999999985
No 133
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.50 E-value=1.1e-13 Score=137.46 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||..|+|||||+++|++..+.... .++++..+..... .+. .....+.||||||++.|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~------~~~----~~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNY----KATIGVDFEMERF------EIL----GVPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEE------EEC----CEEEEEEEEeCCChHHHHhhHH
Confidence 5899999999999999999987765332 2233222211100 000 0012489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc----CCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR----NTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~----~iP~IVVLNKIDLL 922 (923)
.+++.+|++|||||+++......+ .++..+... ..|+|||+||+|+.
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 999999999999999873222222 233333322 35699999999973
No 134
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.50 E-value=8.6e-14 Score=133.32 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|.+|+|||||+++|+...+.....+.+ +..+.. . +. .......+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~----~~~~~~-------~--~~--~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK----ADSYRK-------K--VV--LDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcc----hhhEEE-------E--EE--ECCEEEEEEEEECCChhhhhHHHH
Confidence 69999999999999999999766542211111 111100 0 00 011123489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhH-HHHHHHH-H---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQT-IESLNLL-K---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qt-iEsL~lL-k---k~~iP~IVVLNKIDLL 922 (923)
.+++.++++|+|||+.+...... ..++..+ . ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 99999999999999876322111 1222222 2 2479999999999984
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.50 E-value=1.1e-13 Score=136.69 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=75.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
|+|+|.+++|||||+++|.+. +.. .+.++++.... .+ .+....+.||||||+..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~----~~~~t~g~~~~----------~~----~~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPK----KVAPTVGFTPT----------KL----RLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCc----cccCcccceEE----------EE----EECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999864 221 12233332111 01 112245899999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qt-iEsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
++..||++|||||++....... ..++..+.. .++|+|||+||+|+.
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 9999999999999987433222 223333322 368999999999974
No 136
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.50 E-value=1e-13 Score=135.76 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|+.++|||||+++|....+.. +.++++..+. .+ .+....|.||||||+..|..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-----~~pt~g~~~~----------~~----~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVE----------TV----EYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCCCCcceE----------EE----EECCEEEEEEECCCCHhHHHHH
Confidence 369999999999999999997654431 1222222110 01 1122348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCH-hHHHHHH-HHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEP-QTIESLN-LLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~-qtiEsL~-lLkk---~~iP~IVVLNKIDLL 922 (923)
..+++.||++|||||+++.... ....++. ++.. ..+|+|||+||+|+.
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 9999999999999999874221 1122232 2222 258999999999973
No 137
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=1e-13 Score=135.65 Aligned_cols=113 Identities=22% Similarity=0.198 Sum_probs=76.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||++|+|||||+++|+...+... +.++++..+..... + ......+.||||||++.|..++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~~-------~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYVADIE-------V----DGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccccceEEEEE-------E----CCEEEEEEEEeCCCchhhhhcc
Confidence 4699999999999999999998665432 12222211111000 0 0011248999999999998888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..++..+|++|+|||+.+......+ .++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 8889999999999999864332222 12333333 378999999999974
No 138
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.50 E-value=1e-13 Score=138.04 Aligned_cols=110 Identities=21% Similarity=0.159 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|..|+|||||+++|....+.. +.++++..+.. + .+....|.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~----------~----~~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVET----------V----TYKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEE----------E----EECCEEEEEEECCCChhhHHH
Confidence 4779999999999999999997544321 22222221111 0 112235899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCH-hHHHHHHHH-Hh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL-KM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~-qtiEsL~lL-kk---~~iP~IVVLNKIDLL 922 (923)
+..+++.||++|||||+++.... ....++..+ .. .++|++||+||+|+.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 99999999999999999874221 222333322 22 358999999999973
No 139
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.50 E-value=1e-13 Score=142.50 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=75.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|+...+... ...++..+...++.. ......|.|||||||..|...+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~--------------~~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNS--------------EGKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeec--------------CCCCceEEEEECCCCHHHHHHH
Confidence 4699999999999999999998655322 111111111111100 0112358999999999999888
Q ss_pred HhhccCC-CEEEEEEeCCCCCC--HhHHHHHH-H---HH--hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLC-DIAILVVDIMHGLE--PQTIESLN-L---LK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~a-DiVILVVDas~gle--~qtiEsL~-l---Lk--k~~iP~IVVLNKIDLL 922 (923)
..++..+ ++||||||+..... .....+|. + +. ..++|+|||+||+|++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 8899998 99999999987421 11222221 1 11 2479999999999985
No 140
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=8.4e-14 Score=137.87 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|||.+||||||||++|++..+. ... .++++..+... +..+. .....++||||+|+..|..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~----~~T~~~~~~~~------~~~~~----~~~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAY----SPTIKPRYAVN------TVEVY----GQEKYLILREVGEDEVAIL 69 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccC----CCccCcceEEE------EEEEC----CeEEEEEEEecCCcccccc
Confidence 456999999999999999999987664 221 12222211100 00000 0012378999999999988
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH-hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk-k~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 888899999999999999874332222 2333332 2368999999999984
No 141
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.50 E-value=1.3e-13 Score=140.61 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||..++||||||.+|....+... ..++++..+.... +.. ......|.||||||+..|..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~----~~~t~~~~~~~~~--------i~~--~~~~~~l~iwDt~G~~~~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESP----YGYNMGIDYKTTT--------ILL--DGRRVKLQLWDTSGQGRFCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCcceeEEEEEE--------EEE--CCEEEEEEEEeCCCcHHHHHH
Confidence 46799999999999999999997655322 1122222221100 000 001134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++..+...+. ++..+.. .++|+|||+||+||.
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 999999999999999999855444333 3334432 368999999999984
No 142
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.50 E-value=6.9e-14 Score=160.20 Aligned_cols=128 Identities=26% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCC-----------Ccc-eeec--ceeeecccccccceeeecc-ccccCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----------GGI-TQQI--GATYFPAENIRERTRELKA-NATLKVPG 858 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~gea-----------gGI-T~qI--gat~~p~e~i~ekt~~I~~-~~~~k~~~ 858 (923)
..+|+|+||+++|||||+.+|+...-..... .+- +..+ ...+.+.+..+..+..+.. ...+....
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 3569999999999999999998521100000 000 0000 0011111111111111111 12233456
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-------CHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-------e~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
|+|||||||..|...+..+++.+|++|||||+..|+ ..|+.++|.++...++| +|||+||||+
T Consensus 87 i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 87 FTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred EEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 999999999999999999999999999999999886 47999999999999997 6799999994
No 143
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.50 E-value=8.1e-14 Score=160.73 Aligned_cols=129 Identities=25% Similarity=0.363 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCC-----------CCccee-ecceeeecccccccceeeeccc-----cccCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQ-QIGATYFPAENIRERTRELKAN-----ATLKV 856 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~ge-----------agGIT~-qIgat~~p~e~i~ekt~~I~~~-----~~~k~ 856 (923)
.++|+||||+++|||||+++|+...-.... ..|.+. .+...++......++.+++... ..+..
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 467999999999999999999864311100 011110 0000011111111122222211 22334
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
..|+|||||||..|...+..++..+|++|||||+..++..++.+++.++...++ |+|||+||||++
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 569999999999998888888999999999999999999999988887777765 689999999985
No 144
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.49 E-value=1.2e-13 Score=136.25 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+.+|+...+..... +++...+ .. ...+. .....+.||||||+..|..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~----~t~~~~~-~~------~~~~~----~~~~~~~i~Dt~G~~~~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYV----PTAFDNF-SV------VVLVD----GKPVRLQLCDTAGQDEFDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----Cceeeee-eE------EEEEC----CEEEEEEEEECCCChhhcccc
Confidence 368999999999999999998766542211 1111111 00 00010 011248899999999999998
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++....+.. .++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 8899999999999999985544333 34444443 368999999999973
No 145
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=1.5e-13 Score=137.42 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=77.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|..|+|||||+++|++..+... +.+.++..+.... +.. ......|.||||||+..|..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~----~~~t~~~~~~~~~--------~~~--~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES----TKSTIGVDFKIKT--------VYI--ENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEE--------EEE--CCEEEEEEEEECCCcHHHHhhH
Confidence 4699999999999999999998766432 1222222221110 000 0011348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+++......+. ++..+. ...+|+|||+||+|+.
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 99999999999999998754333222 223332 2358999999999975
No 146
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=1.3e-13 Score=155.36 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..++|+|+|++++|||||+|+|++.... ....+++|.......+ .+....++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~----------------~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPF----------------ERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEE----------------EECCcEEEEEECCCccccc
Confidence 4567999999999999999999986532 2223333322111111 1112348999999964432
Q ss_pred h----------H-HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 N----------L-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 n----------l-rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. + ...++..||++|||||+++++..++..++.++...++|+|||+||+|++
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 1 1 2357889999999999999999999999988888899999999999985
No 147
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=6e-14 Score=171.38 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=91.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccC-CCCcceeecceeeecccccccceeeecc-ccccC----------C
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKA-NATLK----------V 856 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g-eagGIT~qIgat~~p~e~i~ekt~~I~~-~~~~k----------~ 856 (923)
++++|| |+|+||+++|||||+++|+...-... ...|.+. ...+.+.+..+..+..... ...|. .
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~--~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR--FTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQP 91 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCcee--ecccchhhHhhcceeeccceEEEeecccccccCCCc
Confidence 466776 99999999999999999986332100 0001000 0111111111111111000 01111 2
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|+|||||||..|...+..+++.+|++|||||+..++..++..+|+.+...++|+|||+||||++
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 458999999999999999999999999999999999999999999999999999999999999997
No 148
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.49 E-value=1.9e-13 Score=133.76 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|+...+.... .+.++..+..... .+.. ....|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~------~~~~----~~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTI------EVDG----IKVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEE------EECC----EEEEEEEEeCCCcHhHHhhHH
Confidence 6999999999999999999987765332 2222222111000 0000 012388999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|+|||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999999998743333222 222222 2368999999999974
No 149
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=1.4e-13 Score=155.07 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc------
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE------ 868 (923)
+|+|||++|+|||||+|+|++.... ....+|+|........ .+....|.||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~----------------~~~~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDA----------------EWGGREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEE----------------EECCeEEEEEECCCCCCcchhH
Confidence 3899999999999999999986542 2223333332211111 1122348999999973
Q ss_pred --chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 --SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 --sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+..++..++..+|+||||||+..++......++..++..++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 344556678899999999999999999988888888888899999999999974
No 150
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.49 E-value=1.4e-13 Score=136.53 Aligned_cols=110 Identities=25% Similarity=0.237 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|+|+|++++|||||+++|+...+.. ..++++..+.. + .+....|.||||||+..|..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~----------~----~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEE----------I----VYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEE----------E----EECCeEEEEEECCCCHHHHHH
Confidence 3569999999999999999998755431 22222222111 0 111234899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHh-HHHHHH-HHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~q-tiEsL~-lLkk---~~iP~IVVLNKIDLL 922 (923)
+..++..||++|||||+++..... ....+. ++.. .++|+|||+||+|+.
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 999999999999999998742221 112222 2222 358999999999974
No 151
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.49 E-value=1.5e-13 Score=144.19 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||..||||||||.+|++..+... +.++++..|... +.. ......|.||||+|++.|..++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~----y~pTi~~~~~~~---------~~~--~~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS----YVPTVFENYTAS---------FEI--DKRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCccccceEEE---------EEE--CCEEEEEEEEeCCCcHHHHHHh
Confidence 4699999999999999999998766533 222332222100 000 0111348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHH-HHHHh--cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL-~lLkk--~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+ ..| ..+.. .++|+|||+||+||.
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 9999999999999999985433333 222 22222 368999999999983
No 152
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1.9e-13 Score=154.61 Aligned_cols=112 Identities=26% Similarity=0.358 Sum_probs=82.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
++|+|+|++|+|||||+|+|++..+. ....+++|....... ..+....|.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~----------------~~~~~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGE----------------AEWLGREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEE----------------EEECCcEEEEEECCCCCCcchh
Confidence 57999999999999999999986542 222233332221110 111224589999999886
Q ss_pred ----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ----f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+...++..+|+||||||+.+++......++..++..++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 23334567889999999999999888887777888888899999999999963
No 153
>PLN03118 Rab family protein; Provisional
Probab=99.49 E-value=1.7e-13 Score=140.24 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++|+|||||+++|++..+.. +.+.++..+.... +.. ......|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~--------~~~--~~~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVED-----LAPTIGVDFKIKQ--------LTV--GGKRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCceeEEEEEE--------EEE--CCEEEEEEEEECCCchhhHHH
Confidence 4679999999999999999999866532 2222222221110 000 001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HH-HHHH----hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL-~lLk----k~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++......+. +| ..+. ...+|+|||+||+|+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999998754444332 12 2222 2357999999999984
No 154
>PLN03110 Rab GTPase; Provisional
Probab=99.49 E-value=1.8e-13 Score=141.59 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++|+||||||++|++..+.... .++++..+.... +.. ......+.||||||+..|..+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~----~~t~g~~~~~~~--------v~~--~~~~~~l~l~Dt~G~~~~~~~ 77 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLES----KSTIGVEFATRT--------LQV--EGKTVKAQIWDTAGQERYRAI 77 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEE--------EEE--CCEEEEEEEEECCCcHHHHHH
Confidence 357999999999999999999987664321 122222221110 000 001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCc
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRF 921 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDL 921 (923)
+..+++.++++|||||+++......+. ++..+.. .++|+|||+||+|+
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 129 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhc
Confidence 999999999999999998754443332 3444433 36899999999997
No 155
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.48 E-value=1.4e-13 Score=137.22 Aligned_cols=112 Identities=22% Similarity=0.265 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|+.|+|||||+++|.+..+.. +.++++... ..+ .+....+.+|||||+..+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~----------~~i----~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTS----------EEL----TIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcce----------EEE----EECCEEEEEEECCCCHHHH
Confidence 457889999999999999999998765421 111111100 001 1112348899999999998
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCH-hHHHHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~-qtiEsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..++..++++|||||+++.... .....+..+. ..++|+|||+||+|+.
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 8888999999999999999863221 1222222222 2468999999999984
No 156
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=4.3e-14 Score=143.67 Aligned_cols=113 Identities=23% Similarity=0.309 Sum_probs=83.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
..|+|+|.+|+|||+|+|++....|... ....||..++........ ...-|+||||.|++.|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~q----ykaTIgadFltKev~Vd~----------~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQ----YKATIGADFLTKEVQVDD----------RSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHH----hccccchhheeeEEEEcC----------eEEEEEEEecccHHHhhhcc
Confidence 3589999999999999999998777543 233455555443322111 11238999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHHH--HHHh------cCCcEEEEEeCCCc
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVRF 921 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL~--lLkk------~~iP~IVVLNKIDL 921 (923)
...++++|+|+||||+.+.-+...+..|+ +|.. ..+||||++||+|+
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 99999999999999999865555555443 2222 25899999999997
No 157
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.48 E-value=1.7e-13 Score=143.51 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|||.+++|||||+++|+...+.. ..++++..+.... +..+.|.||||||++.|..++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-----~~~Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-----TVSTVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-----CCCccceEEEEEE--------------eeEEEEEEEeCCCcccchhhH
Confidence 368999999999999999999877642 1223333222110 112348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. +|..+. ..++|+|||+||+||.
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999854444332 222222 2368999999999984
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=2e-13 Score=137.18 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|.+|+|||||+++|++..+... .+.++.+.. . ..+....+.||||||+..+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~----------~----~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSE----------E----LAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceE----------E----EEECCEEEEEEECCCCHHHH
Confidence 3457899999999999999999987654211 111111000 0 01122458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHh-HHHHHH-HHH---hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~q-tiEsL~-lLk---k~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++..... ....+. ++. ..++|+|||+||+|+.
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 99999999999999999998742111 111222 222 2478999999999974
No 159
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.48 E-value=2.2e-13 Score=137.10 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..++|+|+|..++|||||+++|....+.. ..++++..+.. + .+....+.||||||+..|..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~----------~----~~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVET----------V----EYKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEE----------E----EECCEEEEEEECCCCHHHHH
Confidence 35679999999999999999997644421 12222221111 0 11223489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++...... ...+..+.. .++|+|||+||+|+.
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 99999999999999999987432221 222222221 368999999999974
No 160
>PRK15494 era GTPase Era; Provisional
Probab=99.48 E-value=2e-13 Score=151.20 Aligned_cols=117 Identities=26% Similarity=0.374 Sum_probs=80.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs- 869 (923)
+.++++|+|+|++|+|||||+|+|++..+.. +++.++.+. ....++ ..+...+|+||||||+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-----vs~k~~tTr-------~~~~~~---~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-----VTPKVQTTR-------SIITGI---ITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceee-----ccCCCCCcc-------CcEEEE---EEeCCeEEEEEECCCcCCC
Confidence 3466789999999999999999999876531 111111111 001111 112234589999999743
Q ss_pred hhh-------HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 FTN-------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~n-------lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.. ....++..||+||||||...++......++..+...+.|+|||+||+|+.
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 211 12245789999999999988777766667777777788999999999974
No 161
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.48 E-value=1.4e-13 Score=139.67 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||+.|+|||||+++|++..+... +.+.+...+.. .+.. ......+.||||||+..|..++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~----~~~t~~~~~~~---------~~~~--~~~~~~l~i~D~~G~~~~~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK----YRRTVEEMHRK---------EYEV--GGVSLTLDILDTSGSYSFPAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc----CCCchhhheeE---------EEEE--CCEEEEEEEEECCCchhhhHHHH
Confidence 389999999999999999998665321 11111111100 0000 00112488999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHHH-HHH----HhcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEsL-~lL----kk~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||+++.........+ ..+ ...++|+|||+||+|+.
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 999999999999999874433322221 222 22479999999999984
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=99.47 E-value=2.9e-13 Score=136.52 Aligned_cols=110 Identities=27% Similarity=0.393 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC-----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh----- 867 (923)
+.++|+|+|.+|+|||||+|+|++..+..+..++++.. +.. + ....+.||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~------~~~--------~------~~~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK------PNH--------Y------DWGDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC------ceE--------E------eecceEEEeCCccccccc
Confidence 45789999999999999999999866543322222211 100 0 0114899999994
Q ss_pred ------cchhhHHHhh----ccCCCEEEEEEeCCCCC-----------CHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ------ESFTNLRSRG----SGLCDIAILVVDIMHGL-----------EPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 ------Esf~nlrs~~----ls~aDiVILVVDas~gl-----------e~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++..+ +..+++||+|+|+.... ...+..++..+...++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKI 143 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECcccc
Confidence 3344443333 34578999999986421 1233455666666789999999999984
No 163
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.47 E-value=1.5e-13 Score=135.64 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=76.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|++|+|||||+++|+...+.....+.+... +.. .+... ...+.+.||||||+..|..++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~----~~~---------~~~~~--~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENT----FSK---------IIRYK--GQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhh----EEE---------EEEEC--CEEEEEEEEECCChHhhHHHH
Confidence 469999999999999999999766543222211111 100 00000 011247899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHH----hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEs-L~lLk----k~~iP~IVVLNKIDLL 922 (923)
..++..++++|+|||+++....+.... +..+. ..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 999999999999999997543333322 22222 2467999999999974
No 164
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.47 E-value=1.3e-13 Score=156.38 Aligned_cols=128 Identities=26% Similarity=0.348 Sum_probs=82.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cccC---------CCCcceeecc----eeeecccccccceeeec-cccccCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQEG---------EAGGITQQIG----ATYFPAENIRERTRELK-ANATLKVP 857 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn--Vq~g---------eagGIT~qIg----at~~p~e~i~ekt~~I~-~~~~~k~~ 857 (923)
.++|+|+||+++|||||+++|+... +... ...|. ..+. ....+....+..+..+. ....+...
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~-~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGK-ASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCC-cccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 3569999999999999999998521 1100 00000 0000 00011111111111111 11223345
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC---CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g---le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
.|+|||||||..|...+..++..+|++|||||++++ ...++..++.++...++ |+|||+||+|++
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 699999999999988888889999999999999988 66777777666666554 699999999985
No 165
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=1.9e-13 Score=141.04 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||.+|+||||||++|++.++.... .++++..++... ..+.. .....|.||||||++.|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~----~~ti~~d~~~~~------i~~~~---~~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS----DPTVGVDFFSRL------IEIEP---GVRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CceeceEEEEEE------EEECC---CCEEEEEEEeCCcchhHHHHH
Confidence 57999999999999999999987664321 122222221110 00000 011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++.-....+ .++..+. ...+|+|||+||+|+.
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 9999999999999999874322222 2222222 2357889999999984
No 166
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.47 E-value=1.5e-13 Score=133.64 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-hhhHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLR 874 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs-f~nlr 874 (923)
+|+|||++|+|||||+++|+...+... +.+++...+... ..+ ......+.||||||+.. +...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~----~~~t~~~~~~~~-------~~~----~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE----YDPNLESLYSRQ-------VTI----DGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc----cCCChHHhceEE-------EEE----CCEEEEEEEEECCCCcccccchH
Confidence 389999999999999999987554321 111111111000 000 11112488999999985 34556
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HH---HHHH--hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SL---NLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL---~lLk--k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+. ++ ..+. ..++|+|||+||+|+.
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 77889999999999998754333222 22 2222 2379999999999973
No 167
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.47 E-value=1.4e-13 Score=155.64 Aligned_cols=131 Identities=26% Similarity=0.335 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc---cCCCCcceeecceeeeccccc---c----cceeee-ccc--cccCCCC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENI---R----ERTREL-KAN--ATLKVPG 858 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq---~geagGIT~qIgat~~p~e~i---~----ekt~~I-~~~--~~~k~~~ 858 (923)
+.+++|+|+||+++|||||+++|.+..+. .....++|..++..++..... . ..+..+ ... .......
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 34567999999999999999999754221 122345666666544332100 0 000000 000 0001245
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
|+|||||||+.|...+..+++.+|++|||||+++++ ..++.+++.++...++ |+|||+||+|++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 899999999999999999999999999999999987 7888888888877776 599999999985
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=2.3e-13 Score=153.83 Aligned_cols=114 Identities=20% Similarity=0.302 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch-
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf- 870 (923)
..++|+|+|++|+|||||+|+|++.+.. .+..+|+|.......+ .+....+.||||||+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~----------------~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPF----------------ERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEE----------------EECCeeEEEEECCCCCCCc
Confidence 3578999999999999999999976532 2333333322211111 112245899999996422
Q ss_pred ---------hhH-HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 ---------TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ---------~nl-rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
... ..+++..||++|||||++.++..++..++.++...+.|+|||+||+|++
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 212 2357889999999999999999999999988888899999999999985
No 169
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.47 E-value=3.1e-13 Score=125.44 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=76.7
Q ss_pred EEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcchh-----
Q 002428 799 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHESFT----- 871 (923)
Q Consensus 799 VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEsf~----- 871 (923)
|+|++|+|||||+++|++..+. .....+.+.......+ .+. ...+.||||||+..+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVW----------------ELGPLGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEE----------------EecCCCcEEEEECCCCCccccchhh
Confidence 6899999999999999986554 2222222211111000 011 3569999999976553
Q ss_pred --hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 --nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+..+++.+|++|||+|+..........++..+...++|+|||+||+|++
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 65 REELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 344457899999999999998777666665667777899999999999986
No 170
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.47 E-value=1.4e-13 Score=157.88 Aligned_cols=128 Identities=23% Similarity=0.232 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCC-----------CCcceeecceeeecccccccceeeeccc-----cccCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQQIGATYFPAENIRERTRELKAN-----ATLKVP 857 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~ge-----------agGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~~ 857 (923)
.++|+|+||+++|||||+.+|+...-.... .++. ..+...++......++.+++... ..+..+
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~-~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcc-cchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 355999999999999999999852210000 0000 00000001111111111222211 122334
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-------CHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-------e~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
.|+|||||||..|...+..+++.+|++|||||+..+. ..++.+++.++...++| +|||+||||+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 6999999999999999999999999999999999862 27999999999999995 78899999974
No 171
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=2.1e-13 Score=134.42 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|..++|||||+++|.+..+.. ..++++..+.. ..+....|.||||||+..|..++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-----~~~T~~~~~~~--------------~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-----PIPTIGFNVET--------------VEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCceeEEE--------------EEECCEEEEEEECCCChhcchHHH
Confidence 48999999999999999998754321 12222221110 011224589999999999998999
Q ss_pred hhccCCCEEEEEEeCCCCCCH-hHHHHHHHHH-h---cCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLK-M---RNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~-qtiEsL~lLk-k---~~iP~IVVLNKIDLL 922 (923)
.++..+|++|||||+++.... ....++..+. . .++|+|||+||+|+.
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 999999999999999874222 1122333222 2 248999999999974
No 172
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.3e-14 Score=142.04 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.+.||+||..++|||||+-+|....|... +.++||..|+........ ....|.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~~~----------~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTVDD----------NTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEEEeCC----------cEEEEEEEEcCCccccc
Confidence 4667899999999999999999998888754 566777777654322111 12348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHhc---CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk~---~iP~IVVLNKIDLL 922 (923)
.+..+||+.++++|+|||+++.-+..... |+..|... ++-|.||+||+||.
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 99999999999999999999855444443 33344333 45577799999985
No 173
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.46 E-value=2.4e-13 Score=133.19 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=75.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|.+|+|||||+++|++..+... +.+.++..+... +.. ......+.||||||+..|..++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~---------~~~--~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES----YDPTIEDSYRKQ---------VEI--DGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEE---------EEE--CCEEEEEEEEeCCCcccchhhh
Confidence 4699999999999999999987655321 111221111110 000 0011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH----HhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lL----kk~~iP~IVVLNKIDLL 922 (923)
..+++.++++|||||+++........ ++..+ ...++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 99999999999999998743222222 11212 23468999999999974
No 174
>PRK13351 elongation factor G; Reviewed
Probab=99.46 E-value=1.9e-13 Score=163.70 Aligned_cols=131 Identities=26% Similarity=0.323 Sum_probs=90.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeec-cccccCCCCEEEEeCCCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGh 867 (923)
.++|| |+|+||+|+|||||+++|+...-.....+.+.. .....+.+....+..+.... ....+....|+|||||||
T Consensus 6 ~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 45666 999999999999999999853211000000000 00011111111111111000 112234456999999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..|...+..+++.+|++|||||++.+...++..+|..+...++|+|||+||+|+.
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999998888899999999999985
No 175
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.46 E-value=2.9e-13 Score=136.46 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||..++|||||+++|++..+... +.++++..+..... .+. .....|.||||+|++.|..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~----~~~T~g~~~~~~~i------~~~----~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGVNFMEKTI------SIR----GTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEE------EEC----CEEEEEEEEeCCCchhHHHhh
Confidence 3689999999999999999998766532 23333332221100 000 011248999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||+++......+ .++..+.. ..+| |||+||+||.
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 9999999999999999885443332 23333333 2456 6889999984
No 176
>PLN03108 Rab family protein; Provisional
Probab=99.46 E-value=3.3e-13 Score=138.84 Aligned_cols=114 Identities=23% Similarity=0.185 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||++|+||||||++|++..+..... +.++..+..... .+. .....|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~----~ti~~~~~~~~i------~~~----~~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMI------TID----NKPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CCccceEEEEEE------EEC----CEEEEEEEEeCCCcHHHHHHH
Confidence 579999999999999999999876653211 222222211000 000 001238899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
..+++.+|++|||||++.......+ .++..+. ...+|+|||+||+|+.
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9999999999999999874433333 2233232 2368999999999984
No 177
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.46 E-value=1.6e-13 Score=126.62 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|+.|+||||||++|++..+..... ...+....+. .....+. .....+.|||++|+..+...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSV---PEETSEITIG-----VDVIVVD----GDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------SSTTSCEE-----EEEEEET----TEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCccccc---ccccCCCcEE-----EEEEEec----CCceEEEEEecCccceeccccc
Confidence 58999999999999999999866541000 0000000000 0000000 0111289999999988877766
Q ss_pred hhccCCCEEEEEEeCCCCCCHhH----HHHHHHHHh--cCCcEEEEEeCCC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQT----IESLNLLKM--RNTEFIVALNKVR 920 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qt----iEsL~lLkk--~~iP~IVVLNKID 920 (923)
..+..+|++|||||+++..+... +.+|..+.. .++|+|||+||+|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 67999999999999987432222 122333332 4699999999998
No 178
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=2.4e-13 Score=129.40 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|++|+|||||+++|++..+.... .+.....+.. .+. .......+.||||||+..+..++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~~~~~~~~~---------~~~--~~~~~~~~~l~D~~g~~~~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEY----DPTIEDSYRK---------TIV--VDGETYTLDILDTAGQEEFSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCc----CCChhHeEEE---------EEE--ECCEEEEEEEEECCChHHHHHHHH
Confidence 4899999999999999999976543221 1111100000 000 000113488999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhH-HHHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qt-iEsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.+++.+|++|+|||+.+...... ..++..+. ...+|++||+||+|+.
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 99999999999999987432222 22222222 1368999999999975
No 179
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.46 E-value=2.7e-13 Score=136.31 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|+.++|||||+++|....+.. +.++++..+.. + .+....+.||||||+..|..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-----~~~T~~~~~~~----------~----~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-----TIPTIGFNVET----------V----EYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-----cCCccccceEE----------E----EECCEEEEEEECCCCHhHHHH
Confidence 4679999999999999999997654421 11222221111 0 112234899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHh-HHHHHH-HHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~q-tiEsL~-lLkk---~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++..... ....+. .+.. ..+|+|||+||+|+.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 999999999999999998632111 111222 2222 358999999999973
No 180
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=8.4e-14 Score=168.01 Aligned_cols=130 Identities=29% Similarity=0.317 Sum_probs=90.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccC-CCCcceeecceeeecccccccceeeecc-cccc----CCCCEEEE
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKA-NATL----KVPGLLVI 862 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g-eagGIT~qIgat~~p~e~i~ekt~~I~~-~~~~----k~~~L~II 862 (923)
+.++|| |+|+||+++|||||+++|+...-... ...|.+ ....+.+....+..+..... ...| ..+.|+||
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~--~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~li 92 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQ--LALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLI 92 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcc--eecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEE
Confidence 456777 99999999999999999986321100 000000 00111111111111100000 0111 13458999
Q ss_pred eCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 863 DTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||||..|...+.++++.+|++|||||+..++..++..+|.++...++|+|||+||+|++
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 999999999999999999999999999999999999999998888889999999999985
No 181
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-13 Score=155.45 Aligned_cols=126 Identities=28% Similarity=0.374 Sum_probs=94.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-----cccccCCCCEEEEeC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-----ANATLKVPGLLVIDT 864 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-----~~~~~k~~~L~IIDT 864 (923)
.++|| |+||-|++.|||||++.||...-.-.+ ..++....+.. +-.++-++|. ..+.|....|+||||
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~----~e~v~ERvMDS-nDlEkERGITILaKnTav~~~~~~INIvDT 75 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFRE----REEVAERVMDS-NDLEKERGITILAKNTAVNYNGTRINIVDT 75 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhcccccc----ccchhhhhcCc-cchhhhcCcEEEeccceeecCCeEEEEecC
Confidence 35788 999999999999999999863311100 01111111111 1111222222 234566778999999
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||.+|.-...+.++.+|+||||||+..|..+||...+......+.+.|||+||||+.
T Consensus 76 PGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp 133 (603)
T COG1217 76 PGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP 133 (603)
T ss_pred CCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999989999999999999984
No 182
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=3.1e-13 Score=155.57 Aligned_cols=114 Identities=19% Similarity=0.317 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh---- 867 (923)
..++|+|||++++|||||+|+|++..+. ....+++|..+....+ .+....+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~----------------~~~~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLI----------------ELGGKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEE----------------EECCEEEEEEECCCccccc
Confidence 3578999999999999999999986642 2233333332211111 111234789999995
Q ss_pred ------cchhhHH-HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ------ESFTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 ------Esf~nlr-s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++ ..++..+|+||||||++.++..+...++..+...++|+|||+||+||+
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 2233332 346789999999999999999999888888888899999999999984
No 183
>PLN00023 GTP-binding protein; Provisional
Probab=99.46 E-value=3.5e-13 Score=148.69 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=84.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccc-ccccc---eeeeccccccCCCCEEEEeCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRER---TRELKANATLKVPGLLVIDTP 865 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e-~i~ek---t~~I~~~~~~k~~~L~IIDTP 865 (923)
..+..++|+|||+.||||||||++|+...+... ..++++..+.... .+... ...+... ......|.||||+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~----~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTA 91 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR----PPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVS 91 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccc----cCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECC
Confidence 356678899999999999999999998766432 2223333221100 00000 0000000 0012348999999
Q ss_pred CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHhc---------------CCcEEEEEeCCCcC
Q 002428 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR---------------NTEFIVALNKVRFS 922 (923)
Q Consensus 866 GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk~---------------~iP~IVVLNKIDLL 922 (923)
|++.|..++..+++.+++||||||++.......+. ++..+... ++|||||+||+||.
T Consensus 92 GqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 92 GHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred CChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 99999999999999999999999999854443332 33333321 48999999999984
No 184
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.8e-13 Score=153.08 Aligned_cols=127 Identities=28% Similarity=0.383 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--ccc----------CCCCcceeecceeeecccccccceeeeccc-----cccCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQE----------GEAGGITQQIGATYFPAENIRERTRELKAN-----ATLKV 856 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn--Vq~----------geagGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~ 856 (923)
..+|+||||+++|||||+.+|+..- +.. .+.+--+. ...++......++.+++... .....
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf--~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESF--KFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCce--EEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4569999999999999999998521 100 00011111 11222222222233333322 11233
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-------le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
+.|+|||||||.+|...+..+.+++|++|||||+..+ +..|+.+++.+++..++ .+||++||||++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccc
Confidence 5699999999999999999999999999999999987 78999999999999888 599999999986
No 185
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.45 E-value=2.6e-13 Score=156.09 Aligned_cols=133 Identities=19% Similarity=0.292 Sum_probs=97.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeeccc---cccc--ceeeecc----------c
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE---NIRE--RTRELKA----------N 851 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e---~i~e--kt~~I~~----------~ 851 (923)
....+++|+++||+++|||||+.+|.+... ...-..|+|..+|+.++... .... .+..+.. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345567899999999999999999997543 23445688888887654210 0000 0000000 0
Q ss_pred c--ccCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-CCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 852 A--TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 852 ~--~~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-le~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
. ......+.|||||||..|...+..++..+|++|||||+..+ +.+|+.+++.++...+++ +|||+||||++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence 0 00123589999999999999999999999999999999986 789999999888888874 89999999985
No 186
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.44 E-value=1.9e-13 Score=164.68 Aligned_cols=130 Identities=28% Similarity=0.261 Sum_probs=89.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccC-CCCcceeecceeeecccccccceeeec-----cccccCCCCEEEE
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELK-----ANATLKVPGLLVI 862 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g-eagGIT~qIgat~~p~e~i~ekt~~I~-----~~~~~k~~~L~II 862 (923)
+.++|| |+|+||.++|||||+++|+...-... ...+- .....+.+....+..+.... ....+..+.|+||
T Consensus 16 ~~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~--~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~li 91 (720)
T TIGR00490 16 PKFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQ--QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLI 91 (720)
T ss_pred cccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCc--eeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEE
Confidence 345666 99999999999999999985321100 00000 00011111111111111000 0012334569999
Q ss_pred eCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 863 DTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||||..|...+..+++.+|++|||||+..++..++..++..+...++|+|||+||+|+.
T Consensus 92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 999999999999999999999999999999999999999988888899999999999985
No 187
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.44 E-value=5e-13 Score=136.95 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~--- 871 (923)
.+|+|||.+|+||||||++|++.++.....+.++..+....+. + ......|.||||||+..|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~----------~----~~~~~~l~i~Dt~G~~~~~~~~ 66 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVV----------L----SGRVYDLHILDVPNMQRYPGTA 66 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEE----------E----CCEEEEEEEEeCCCcccCCccc
Confidence 3699999999999999999998776532222221111000000 0 0011348899999975432
Q ss_pred -----hHHHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHH------hcCCcEEEEEeCCCcC
Q 002428 872 -----NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 -----nlrs~~ls~aDiVILVVDas~gle~qtiEs-L~lLk------k~~iP~IVVLNKIDLL 922 (923)
..+..++..+|++|||||++++.+...... +..+. ..++|+|||+||+|+.
T Consensus 67 ~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 67 GQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 224456789999999999987544433322 22222 2468999999999983
No 188
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.44 E-value=4e-13 Score=142.76 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||..|+||||||++|++..+... ++++++..+.... .+ ....+.|.||||+|+..|..++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~----y~pTi~d~~~k~~-------~i----~~~~~~l~I~Dt~G~~~~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQ----YTPTIEDFHRKLY-------SI----RGEVYQLDILDTSGNHPFPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCC----CCCChhHhEEEEE-------EE----CCEEEEEEEEECCCChhhhHHH
Confidence 3699999999999999999998776532 2222221111000 00 0011348999999999999888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH------------hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK------------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiE-sL~lLk------------k~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+++..+.+.+. ++..+. ..++|+|||+||+|+.
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 88899999999999999754333222 222221 1368999999999984
No 189
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.44 E-value=5.7e-13 Score=152.59 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=78.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+|++|+|||||+|+|++.... ....+++|..+.... +.+....+.||||||+..+..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~----------------i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGD----------------FELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEE----------------EEECCEEEEEeeCCCcccchh
Confidence 357999999999999999999986532 223333333221111 112223489999999865432
Q ss_pred H--------HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l--------rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ...++..+|++|||||++++...... ++..+...++|+|||+||+|+.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 2 24577899999999999987766555 5666666689999999999974
No 190
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.44 E-value=5.4e-13 Score=130.28 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|.+..+.. +.++.+..+. .+ .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~~~----------~i----~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFNIK----------TV----QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcceE----------EE----EECCEEEEEEECCCCHHHH
Confidence 446779999999999999999998754421 1112221110 00 1112348999999999888
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCH-hHHHHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~-qtiEsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
..+..+++.||++|||||++..... ....++..+ ....+|++||+||+|+.
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 8888899999999999999863211 112222222 23468999999999974
No 191
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.44 E-value=2.2e-13 Score=161.92 Aligned_cols=129 Identities=23% Similarity=0.298 Sum_probs=88.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccC-----------CCCcce-eecceeeecccccccceeeeccc-----cccCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGIT-QQIGATYFPAENIRERTRELKAN-----ATLKV 856 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~g-----------eagGIT-~qIgat~~p~e~i~ekt~~I~~~-----~~~k~ 856 (923)
.++|+||||+++|||||+++|+...-... ...|.| ..+...++......++.++++.. ..+..
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 35699999999999999999986432110 011111 11111111111111122222222 22334
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
..++|||||||..|...+..++..+|++|||||+..++..++.+++.++...++ |+|||+||+|++
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~ 170 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV 170 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence 569999999999998888889999999999999999999999998888877775 688999999985
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.44 E-value=4.3e-13 Score=151.76 Aligned_cols=112 Identities=22% Similarity=0.356 Sum_probs=87.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh--
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~-- 871 (923)
|+|+|+|.+|||||||+|+|++.... ....+|+|.+.. .....+....|.||||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~----------------y~~~~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI----------------YGDAEWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc----------------cceeEEcCceEEEEECCCCCcCCch
Confidence 78999999999999999999998765 233444444321 11122334559999999976322
Q ss_pred -------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 -------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 -------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+....+..+|+||||||...|+++.+..+..+|+..+.|+|+|+||||-.
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 234567899999999999999999999999999997789999999999963
No 193
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.43 E-value=4.8e-13 Score=149.12 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs----- 869 (923)
++|+|+|.+|+|||||+|+|++..+.....++.|..+.. ..+..+ ....++||||||+..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~------------~~i~~~---~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTT------------RRLDLP---DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEE------------EEEEeC---CCceEEEEecCcccccCCHH
Confidence 679999999999999999999866432222222221111 111110 123589999999722
Q ss_pred ----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHH----HHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ----f~nlrs~~ls~aDiVILVVDas~gle~qtiE----sL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.. +...+..+|++|||||+++......+. ++..+...++|+|+|+||||++
T Consensus 255 lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 255 LVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 222 223578899999999999865544332 2333333368999999999984
No 194
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4.2e-13 Score=137.68 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=90.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
..+|...|+|||..++||||||++|+...|... +..+||..|...... +. -....|+||||.|++.
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~----YqATIGiDFlskt~~------l~----d~~vrLQlWDTAGQER 83 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNT----YQATIGIDFLSKTMY------LE----DRTVRLQLWDTAGQER 83 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhccc----ccceeeeEEEEEEEE------Ec----CcEEEEEEEecccHHH
Confidence 456778899999999999999999998887644 445556555443211 10 1124599999999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCC-HhHHHHHHHHHhcC----CcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRN----TEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle-~qtiEsL~lLkk~~----iP~IVVLNKIDLL 922 (923)
|..++..|++.+.++|+|||+++.-+ .++..||.-++..+ +-++||+||.||+
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 99999999999999999999998544 34455666555442 5588899999986
No 195
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.43 E-value=5.4e-13 Score=137.57 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=76.5
Q ss_pred EcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHhhcc
Q 002428 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 879 (923)
Q Consensus 800 LG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~~ls 879 (923)
||..+|||||||++|+...+... +.++++..+...... + ......|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~----~~~Tig~~~~~~~~~------~----~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFH------T----NRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEE------E----CCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997655422 223333333221100 0 001134899999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCHhHHH-HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 880 LCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 880 ~aDiVILVVDas~gle~qtiE-sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
.+|++|||||++.+.+...+. ++..+.. .++|+|||+||+||.
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999865544333 3343433 478999999999974
No 196
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.43 E-value=6.8e-13 Score=128.01 Aligned_cols=113 Identities=26% Similarity=0.286 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|||+|+.++|||||+++|.+..+.... .++++..+....... ......|.||||+|++.|..++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~----------~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENY----IPTIGIDSYSKEVSI----------DGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSS----ETTSSEEEEEEEEEE----------TTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccc----ccccccccccccccc----------ccccccccccccccccccccccc
Confidence 4899999999999999999987765332 122222111111000 01112489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
..+..+|++|+|||+++.-+...+. ++..+ ....+|+|||+||+|+.
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 9999999999999998743322222 22222 22358999999999974
No 197
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.43 E-value=3.3e-13 Score=128.24 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc----chh
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE----SFT 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE----sf~ 871 (923)
+|+|||++|+|||||+++|++..+. ..++++ + .+. ..+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~---------------~----~~~---~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA---------------V----EYN---DGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee---------------E----EEc---CeeecCchhhhhhHHHH
Confidence 5899999999999999999875431 000000 0 111 2689999973 222
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
......++.+|++|||||++++...+...++..+ ..|+|||+||+|+.
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLA 101 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccC
Confidence 2222457899999999999887665544443322 35999999999974
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.43 E-value=1.1e-12 Score=130.89 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE---- 868 (923)
..++|+|||++|+||||||++|++..+... +.+.++.+... ..+. + ...|.||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~----~~~~~~~t~~~--------~~~~----~-~~~l~l~DtpG~~~~~~ 85 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLAR----TSKTPGRTQLI--------NFFE----V-NDKLRLVDLPGYGYAKV 85 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCccc----ccCCCCceeEE--------EEEe----c-CCeEEEeCCCCCCCcCC
Confidence 346699999999999999999998542211 11111111100 0000 0 1459999999953
Q ss_pred ------chhhHHHhhccC---CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 ------SFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 ------sf~nlrs~~ls~---aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..+...++.. ++++|+|||+..++......++..+...++|+++|+||+|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 86 SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 333344444443 468889999888777666666667777789999999999985
No 199
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.4e-13 Score=136.65 Aligned_cols=114 Identities=24% Similarity=0.195 Sum_probs=85.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
..++|||..|||||+||-+|....|+.-....|...+|...+.... ....|+||||.||++|...+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~--------------k~IKlqiwDtaGqe~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG--------------KQIKLQIWDTAGQESFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC--------------ceEEEEEEecCCcHHHHHHH
Confidence 3588999999999999999999888754333333333333332221 12349999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHH-HHHH---hcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL-~lLk---k~~iP~IVVLNKIDLL 922 (923)
..||+.+-++|||||++++-+...+..| .-++ ..++-|+|++||+||.
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 9999999999999999987666555443 2233 3467899999999984
No 200
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.41 E-value=8e-13 Score=128.38 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=67.1
Q ss_pred EEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcch-------
Q 002428 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHESF------- 870 (923)
Q Consensus 799 VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEsf------- 870 (923)
|+|++|+||||||++|++..+......+.|..+....+ .+. ...+.||||||+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVV----------------EVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEE----------------EcCCCCeEEEEeccccchhhhcCCCc
Confidence 68999999999999999876422222222222111100 111 345899999997432
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCC------CHhHHH-HHHHHH----------hcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGL------EPQTIE-SLNLLK----------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gl------e~qtiE-sL~lLk----------k~~iP~IVVLNKIDLL 922 (923)
...+..++..+|+||+|||+.+.. ...... ++..+. ..++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 222345678899999999998763 122222 112121 1478999999999985
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=1.1e-12 Score=157.91 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=83.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
.++|+|+|++++|||||+|+|++..+. ....+|+|.... .....+....|.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~----------------~~~~~~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRV----------------SYDAEWAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEE----------------EEEEEECCEEEEEEeCCCcCCCCc
Confidence 456999999999999999999976532 122233332210 011112233589999999753
Q ss_pred -----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -----f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..++..++..||+||||||+++++......++..|+..++|+|+|+||+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 34455677899999999999999888888888888888899999999999974
No 202
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.41 E-value=1e-12 Score=133.55 Aligned_cols=114 Identities=23% Similarity=0.208 Sum_probs=81.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+|+|+|+.|+|||||+++|++..+.....+.+...+.......... ...+.+|||+|++.|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 67999999999999999999987776543333222221111111000 1238999999999999999
Q ss_pred HhhccCCCEEEEEEeCCC--CCCHhHHHHHHHHHhc---CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~--gle~qtiEsL~lLkk~---~iP~IVVLNKIDLL 922 (923)
..++..++++|+|+|.+. .+......++..+... .+|+|+|+||+|+.
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 999999999999999986 2333333444444443 58999999999986
No 203
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.40 E-value=8.5e-13 Score=149.76 Aligned_cols=130 Identities=27% Similarity=0.355 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc---cCCCCcceeecceeeeccccc-------ccceeee-cc-ccc-cCCCCE
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENI-------RERTREL-KA-NAT-LKVPGL 859 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq---~geagGIT~qIgat~~p~e~i-------~ekt~~I-~~-~~~-~k~~~L 859 (923)
.+++|+|+||+++|||||+..|.+.... .....|+|..++..++..... ...+..+ .. ... .....|
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4567999999999999999999653211 112356666655433322100 0000000 00 000 002458
Q ss_pred EEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 860 ~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
+|||||||..|...+..++..+|++|||||+.+++ ..++..++.++...++ |+|||+||+|++
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 99999999999988888889999999999999987 7888888888777776 699999999985
No 204
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.39 E-value=1.3e-12 Score=149.75 Aligned_cols=111 Identities=24% Similarity=0.321 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+|++|+|||||+|+|++..+. ....++.|..+.... ..+....+.||||||+..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~----------------i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEH----------------INLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEE----------------EEECCeEEEEEeCCCCCCCcc
Confidence 357999999999999999999986542 222333332221111 111223589999999865543
Q ss_pred H--------HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l--------rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ...++..+|++|||||++++.......+|.. ..++|+|||+||+|+.
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 2 2346788999999999998776665555443 4578999999999984
No 205
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=5e-13 Score=133.49 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.-.+.|+|||.+|+|||+||-+|+...|.......|...+-..++.... ....|.||||.|++.|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg--------------~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG--------------KRLKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC--------------ceEEEEEEeccchHhhh
Confidence 4456799999999999999999998777644322232222222222211 12359999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHH-HH----HhcCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LL----KMRNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~-lL----kk~~iP~IVVLNKIDL 921 (923)
.++..|++.+-+||||||++.+-....+.+|. .+ .+.++-.++|+||||.
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 99999999999999999999876655555443 22 3335667899999996
No 206
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.5e-13 Score=137.56 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|++||.+++|||-||.+|.+..|.......|...+....+... -.....+||||.|++.|....+
T Consensus 16 KiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd--------------~k~vkaqIWDTAGQERyrAitS 81 (222)
T KOG0087|consen 16 KIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD--------------GKTVKAQIWDTAGQERYRAITS 81 (222)
T ss_pred EEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec--------------CcEEEEeeecccchhhhccccc
Confidence 38999999999999999999988864433333222222111111 1123489999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc---CCcEEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~---~iP~IVVLNKIDLL 922 (923)
.|++.+.++|||||++...+.+.+ .||..|+.+ +++|+||+||+||.
T Consensus 82 aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 82 AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 999999999999999986665544 456667655 78999999999985
No 207
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.8e-13 Score=150.02 Aligned_cols=122 Identities=29% Similarity=0.390 Sum_probs=90.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc--CccccCCCCccee---ecceeeecccccccceeeeccc-----cccCCCCEEEEeCCC
Q 002428 797 CCIMGHVDTGKTKLLDCIRG--TNVQEGEAGGITQ---QIGATYFPAENIRERTRELKAN-----ATLKVPGLLVIDTPG 866 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg--tnVq~geagGIT~---qIgat~~p~e~i~ekt~~I~~~-----~~~k~~~L~IIDTPG 866 (923)
.+||-||++|||||...|+- ..++ .+|.+.. ...++..... .++.++|... ..|....|+|+||||
T Consensus 15 FAIISHPDAGKTTlTEkLLlfGgaIq--~AG~Vk~rk~~~~a~SDWM~--iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 15 FAIISHPDAGKTTLTEKLLLFGGAIQ--EAGTVKGRKSGKHAKSDWME--IEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred eeEEecCCCCcccHHHHHHHhcchhh--hcceeeeccCCcccccHHHH--HHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 89999999999999998863 2222 1222211 1111111111 1122233221 234455699999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|++|+.-+++.|.-+|.+|+|||+..|++++|+.++..|+.+++|||-++||+|+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999984
No 208
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.39 E-value=1.2e-12 Score=119.37 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=73.5
Q ss_pred EEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHhhc
Q 002428 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (923)
Q Consensus 799 VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~~l 878 (923)
|+|++|+|||||+++|++......... .+. +....... ........+.||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~-~t~-~~~~~~~~------------~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYE-TTI-IDFYSKTI------------EVDGKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccc-cch-hheeeEEE------------EECCEEEEEEEEecCChHHHHhHHHHHh
Confidence 689999999999999998655211000 000 10000000 0001123489999999988888888889
Q ss_pred cCCCEEEEEEeCCCCCCHhHHHHH-----HHHHhcCCcEEEEEeCCCcC
Q 002428 879 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 879 s~aDiVILVVDas~gle~qtiEsL-----~lLkk~~iP~IVVLNKIDLL 922 (923)
+.+|++|||||++++........+ ......++|+|||+||+|+.
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 999999999999986544444322 23345579999999999985
No 209
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=1.6e-12 Score=156.48 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
.++|+|+|++|+|||||||+|++.++. ....+++|....... ..+....++||||||+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~----------------~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEI----------------VEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeE----------------EEECCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 222333332221111 111223488999999531
Q ss_pred -------hhhHH-HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -------f~nlr-s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..++ ..++..||+||||||+++++..+...++..+...++|+|||+||+|++
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 22222 345788999999999999999999988888888899999999999985
No 210
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.1e-13 Score=157.52 Aligned_cols=128 Identities=30% Similarity=0.436 Sum_probs=97.5
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee-ecccccccceeeecc---ccc--cCCCCEEE
Q 002428 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY-FPAENIRERTRELKA---NAT--LKVPGLLV 861 (923)
Q Consensus 788 ~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~-~p~e~i~ekt~~I~~---~~~--~k~~~L~I 861 (923)
...++|| |||+.|++.|||||+++|+..+-. |.+++.... |-.....+++++|+- .+. ...+.|+|
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngv------is~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nl 76 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGV------ISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINL 76 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccE------echhhccceeeccccchhhhhceeeeccccccccCceEEEE
Confidence 4467888 999999999999999999875532 344432211 111111222333321 111 24456999
Q ss_pred EeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 862 IDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
||+|||.+|....+..+++||+++++||+..|+..||...++++...+..+|+|+||||+++
T Consensus 77 idspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~ 138 (887)
T KOG0467|consen 77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLI 138 (887)
T ss_pred ecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 211
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.39 E-value=2.1e-12 Score=134.35 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||.+|+|||||+++|+...+.... +.+.++..+.. .+..+ ......|.||||||++.+ ++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~---~~~t~~~~~~~------~~i~~----~~~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA---YDASGDDDTYE------RTVSV----DGEESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccC---cCCCccccceE------EEEEE----CCEEEEEEEEeCCCcchH--HH
Confidence 36999999999999999999865553110 11111100000 00000 011234899999999833 33
Q ss_pred Hhhcc-CCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 875 SRGSG-LCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls-~aDiVILVVDas~gle~qt-iEsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..++. .+|++|||||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 44555 8999999999987533322 223333333 368999999999974
No 212
>PRK11058 GTPase HflX; Provisional
Probab=99.38 E-value=1.8e-12 Score=147.94 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch--hh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--TN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf--~n 872 (923)
|.|+|+|.+|+|||||+|+|++..+......+.|..... ..+... ....++||||||+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~------------~~i~l~---~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTL------------RRIDVA---DVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCce------------EEEEeC---CCCeEEEEecCcccccCCHH
Confidence 679999999999999999999866543222222221111 011110 1124889999997432 11
Q ss_pred ------HHHhhccCCCEEEEEEeCCCCCCHhHH----HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ------lrs~~ls~aDiVILVVDas~gle~qti----EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+...+..+|++|+|||+++......+ .++..+...++|+|+|+||||++
T Consensus 263 lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 263 LVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 123456889999999999986544443 23444444479999999999985
No 213
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3e-12 Score=132.31 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC---
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn--Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh--- 867 (923)
..+-||++|.+++|||||||+|++.. ...+..+|.|+.+....+. ..+.|+|.||.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-------------------~~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-------------------DELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-------------------CcEEEEeCCCcccc
Confidence 44569999999999999999999865 4466778888776432221 23889999993
Q ss_pred -------cchhhHHHhhcc---CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 -------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 -------Esf~nlrs~~ls---~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++..|+. ...++|+|||+.|++...+.+.+..+...++|++||+||+|.+
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi 148 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKL 148 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 234455556653 3568999999999999999999999999999999999999975
No 214
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.38 E-value=3.1e-12 Score=131.15 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=79.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
++..++|+|+|+.|||||||+++++...+... +.++++..+...... .......|.+|||||+..|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~----~~~t~~~~~~~~~~~----------~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKK----YIPTLGVEVHPLKFY----------TNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEE----------ECCeEEEEEEEECCCchhh
Confidence 45557899999999999999988776554322 122222222111000 0111234899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHH--hcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEs-L~lLk--k~~iP~IVVLNKIDLL 922 (923)
..++..++..++++|+|||++.......+.. +..+. ..++|++||+||+|+.
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 9898889999999999999987554443332 22222 2368999999999973
No 215
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.2e-12 Score=135.52 Aligned_cols=117 Identities=20% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
-+..+|++||.++||||+||.+|....+... ....||..|... .+..+ .....++||||.|++.|.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~----~~sTiGIDFk~k--------ti~l~--g~~i~lQiWDtaGQerf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS----FISTIGIDFKIK--------TIELD--GKKIKLQIWDTAGQERFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCC----ccceEEEEEEEE--------EEEeC--CeEEEEEEEEcccchhHH
Confidence 3456799999999999999999988766432 334444433321 11111 122459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
.++..|++.+++||||||+++.-+...+. |+..+ ....+|+|||+||||+.
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 99999999999999999999844433332 33333 33478999999999984
No 216
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.38 E-value=8.1e-13 Score=145.21 Aligned_cols=129 Identities=25% Similarity=0.342 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCC---------C--Ccce-eecceeeecccccccceeeeccccccC-----C
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE---------A--GGIT-QQIGATYFPAENIRERTRELKANATLK-----V 856 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~ge---------a--gGIT-~qIgat~~p~e~i~ekt~~I~~~~~~k-----~ 856 (923)
..++|.||+++-||||||.+|++..-+..+ . .+.+ ..+-...+.....-++-.+|.++..|. .
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 346899999999999999999863321100 0 0000 000000010001111222233222221 1
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|+|.|||||+.|..++..+.+.||++|++||+.+|+..|+..+..++...+++ +||++|||||+
T Consensus 86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLv 152 (431)
T COG2895 86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLV 152 (431)
T ss_pred ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeeccc
Confidence 3499999999999999999999999999999999999999999998888888884 89999999996
No 217
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=3.4e-12 Score=141.58 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=73.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-------
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs------- 869 (923)
|+|||.+++||||||++|.......+..++.|..+...++.. .....|+||||||+..
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~---------------~~~~~~~i~D~PGli~ga~~~~g 225 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV---------------DDYKSFVIADIPGLIEGASEGAG 225 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe---------------CCCcEEEEEeCCCccCCCCcccc
Confidence 999999999999999999875544333333332221111110 0123489999999642
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qtiEs-L~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+...+.+++..|+++|||||+++......+.. +..|.. .++|+|||+||||++
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 34455667788999999999986433334333 333432 368999999999985
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=142.04 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=84.4
Q ss_pred CccccCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCC
Q 002428 778 EPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (923)
Q Consensus 778 ~r~~~~l~~~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~ 857 (923)
+.++..++...++ + ++|+|+|+||||||||+++|.+..+-...++.+|.++...++... +.
T Consensus 155 r~~l~~LP~Idp~-~--pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~----------------~~ 215 (346)
T COG1084 155 RDHLKKLPAIDPD-L--PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG----------------YL 215 (346)
T ss_pred HHHHhcCCCCCCC-C--CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC----------------Cc
Confidence 4555556655444 4 559999999999999999999887776666777766655544433 33
Q ss_pred CEEEEeCCCCcch----hhH-----HHhhccCCCEEEEEEeCCCCCCHhH---HHHHHHHH-hcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESF----TNL-----RSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLK-MRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf----~nl-----rs~~ls~aDiVILVVDas~gle~qt---iEsL~lLk-k~~iP~IVVLNKIDLL 922 (923)
.+++|||||.-+- .|. +...-+..++|||+||++..+.... +.++..++ .+..|+|+|+||+|+.
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 5999999995321 111 1122366889999999986433222 22333332 3467999999999975
No 219
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.36 E-value=2.7e-12 Score=128.91 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+|+.|+|||||+++|+...+.... .+++...+..... +. .....+.||||||+..|...+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~-------~~----~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCR-------VD----GKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEE-------EC----CEEEEEEEEECCCChhccccch
Confidence 6999999999999999999865553221 1111111111000 00 0112488999999988877776
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDL 921 (923)
.+++.+|++|+||++.+......+ .++..+.. ..+|+|||+||+|+
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 778999999999999874433333 23444433 26999999999997
No 220
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.36 E-value=2e-12 Score=129.69 Aligned_cols=112 Identities=25% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+..+|+|+|..++||||||++|....+.. +.+++|..... ..+....+.|||++|+..+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~ 72 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFR 72 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEecccccccc
Confidence 455679999999999999999998654321 22333222111 11223458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHH-HH---hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNL-LK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~l-Lk---k~~iP~IVVLNKIDLL 922 (923)
.+|..++..+|+||||||+++.- .......|.. +. ...+|++|++||+|+.
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 99999999999999999998632 1223333333 22 2368999999999974
No 221
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.4e-12 Score=127.32 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=84.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
..|+++|..|+|||+|+.+|.+.-|+.+ -...||..|+-... .+. .....|.||||.|++.|..++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppg----qgatigvdfmiktv------ev~----gekiklqiwdtagqerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTV------EVN----GEKIKLQIWDTAGQERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCC----CCceeeeeEEEEEE------EEC----CeEEEEEEeeccchHHHHHHH
Confidence 3589999999999999999998888754 33344444432111 010 112349999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCC----CCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHG----LEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~g----le~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..|++.+|.+|||||++.. +.+.++.-+....+.++--|+|+||+|+.
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 9999999999999999863 34555555555566677789999999973
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.35 E-value=5.9e-12 Score=119.62 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=72.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-------
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs------- 869 (923)
|+|+|++|+|||||++.|++..+... ...+++.+.... .+.. ...+.||||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~----~~~~~~~t~~~~--------~~~~-----~~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR----TSKTPGKTQLIN--------FFNV-----NDKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee----ecCCCCcceeEE--------EEEc-----cCeEEEecCCCccccccCHHH
Confidence 79999999999999999995333211 111111110000 0000 12589999999643
Q ss_pred ---hhhHHHhhcc---CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ---FTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ---f~nlrs~~ls---~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..++..++. .++++++|+|..+........++..+...+.|+++|+||+|++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 3333334443 4678999999988776777777777888889999999999984
No 223
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.35 E-value=4.5e-12 Score=129.93 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCCHHHHHH-HHHcCccccCC-CCcceeecce--eeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 795 PICCIMGHVDTGKTKLLD-CIRGTNVQEGE-AGGITQQIGA--TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN-~LlgtnVq~ge-agGIT~qIga--t~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
++|+|||..+||||||+. ++....+..+. ...+.++++. .|........+... ...-....|.||||+|++.+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~---~~~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRD---VVDGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccce---eeCCEEEEEEEEeCCCChhh
Confidence 579999999999999996 55443332111 1112233321 11100000000000 00111235999999998753
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++..+...+. |+..+.. .++|+|||+||+||.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556889999999999999865555442 4444433 368999999999974
No 224
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.3e-12 Score=151.19 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=93.4
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec------cccccCCCCEEEE
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK------ANATLKVPGLLVI 862 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~------~~~~~k~~~L~II 862 (923)
+..+|| |+|+||-++|||+|+++|.....+......-.+-...........+......+ .+.....+-++|+
T Consensus 125 p~~irn--V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 125 PERIRN--VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cceEEE--EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 344555 99999999999999999986554322111000000001111111111111111 1122233459999
Q ss_pred eCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 863 DTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
|||||.+|+..+...++.+|++|||||+..|+..++..+|......+.|++||+||+||++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLI 263 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 225
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=1.1e-12 Score=148.20 Aligned_cols=121 Identities=33% Similarity=0.434 Sum_probs=92.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---------------cCCCCcceeecceeeecccccccceeeeccccc
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---------------EGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq---------------~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~ 853 (923)
..++|| ++||-|.+.|||||.++|+...-. ....+|||....+..+.+... .
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-----------~ 72 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-----------D 72 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-----------C
Confidence 457888 899999999999999999852210 111223333322222221111 0
Q ss_pred cCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
-..+-|+|||||||.+|.-..++.+.-|.++|||||+++|++.||+.-+.+....+.-+|-|+|||||.
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP 141 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 141 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC
Confidence 122459999999999999999999999999999999999999999998888888899999999999984
No 226
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.33 E-value=5.3e-12 Score=139.72 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcc-----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHES----- 869 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEs----- 869 (923)
.|+|||.+++||||||++|.......+..++.|..+....+ .+. ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v----------------~~~~~~~~~i~D~PGli~~a~~~ 222 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV----------------RVDDGRSFVIADIPGLIEGASEG 222 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE----------------EeCCceEEEEEeCCCcccCCccc
Confidence 39999999999999999998755332222222221111111 011 13589999999742
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCC---CCHhHHH-HHHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIE-SLNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~g---le~qtiE-sL~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+...+.+++..|+++|||||+++. .....+. ++..|.. .+.|+|||+||||++
T Consensus 223 ~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 223 AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 333455667789999999999864 1222222 2222322 368999999999985
No 227
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=7.7e-12 Score=151.71 Aligned_cols=112 Identities=25% Similarity=0.308 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+++|++|||||||+|+|++.+...++.+|+|.......+ .+....+.||||||+.++..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~----------------~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQF----------------STTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEE----------------EcCceEEEEEECCCcccccc
Confidence 45679999999999999999999877665665665543221111 12234589999999987743
Q ss_pred H----------HHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L----------RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l----------rs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ...+ ...+|++|+|+|+++.. ..+.++..+...++|+|+|+||+|+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhh
Confidence 1 1122 24799999999998732 23445566777899999999999974
No 228
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.32 E-value=7.8e-12 Score=123.30 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|||+.|+||||||.+|+...+... +.+. +..|... ..+.. ....|.||||+|+.. .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~~-~~~~~~~-------i~~~~----~~~~l~i~D~~g~~~-----~ 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL----ESPE-GGRFKKE-------VLVDG----QSHLLLIRDEGGAPD-----A 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC----CCCC-ccceEEE-------EEECC----EEEEEEEEECCCCCc-----h
Confidence 599999999999999999987655422 1111 1111110 00100 012389999999964 2
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDL 921 (923)
.+++.+|++|||||+++....+.. .++..+.. .++|+|||+||+|+
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 456789999999999986655553 33333332 35899999999997
No 229
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=7.7e-12 Score=141.36 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=71.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCC-CCEEEEeCCCCcc------
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES------ 869 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~-~~L~IIDTPGhEs------ 869 (923)
|+|||.+|+|||||||+|++.....+..++.|..+....+. +.. ..|+|+||||+..
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~----------------~~~~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR----------------VDDERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE----------------eCCCcEEEEEeCCCccccccchh
Confidence 99999999999999999997655433333333222111111 111 2389999999643
Q ss_pred -hhhHHHhhccCCCEEEEEEeCCC---C-CCHhHHHHHHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 -FTNLRSRGSGLCDIAILVVDIMH---G-LEPQTIESLNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -f~nlrs~~ls~aDiVILVVDas~---g-le~qtiEsL~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+.....+++..|++||+|||++. . .......++..+.. ...|+|||+||+|++
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 23334467889999999999872 1 11222333444443 258999999999985
No 230
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=125.92 Aligned_cols=126 Identities=22% Similarity=0.249 Sum_probs=90.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec--cccccCCCCEEEEeCCCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~--~~~~~k~~~L~IIDTPGh 867 (923)
..++...|+|+|+.++|||||+..|.............. ..+. ..+..+..+. ....+...+++|++||||
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k---~kr~tTva~D~g~~~~~~~~~v~LfgtPGq 78 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGK---GKRPTTVAMDFGSIELDEDTGVHLFGTPGQ 78 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccc----cccc---cccceeEeecccceEEcCcceEEEecCCCc
Confidence 357778899999999999999999987553211000000 0000 0111111111 111122367999999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CcEEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~-iP~IVVLNKIDLL 922 (923)
.+|..+|..+++.+.++|+|||.+.+.......++.++..++ +|++|++||.||.
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence 999999999999999999999999877776677888888887 9999999999984
No 231
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=9.9e-12 Score=122.86 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|+|||...+|||+||.++++..|... +...+|..+-.....+ ......++||||.|++.|..++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~a----fvsTvGidFKvKTvyr----------~~kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSA----FVSTVGIDFKVKTVYR----------SDKRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccc----eeeeeeeeEEEeEeee----------cccEEEEEEEecccchhhhHHHH
Confidence 599999999999999999998777643 3333443322111111 11224599999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHHHH-H---HHhcCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-L---LKMRNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEsL~-l---Lkk~~iP~IVVLNKIDL 921 (923)
.++++++++||+||+++.-.....+.|. + ....++|+|||+||||+
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM 138 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC
Confidence 9999999999999999854443333322 2 23448999999999997
No 232
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.8e-12 Score=125.03 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=85.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.++|+|+.|+|||+||.+|+...+.......|...++..++.... +...|+||||.|++.|.....
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHH
Confidence 489999999999999999998887755444444444444433222 223599999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHH----HHHHHhcCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIES----LNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEs----L~lLkk~~iP~IVVLNKIDL 921 (923)
.|++.+-++|||||++.+-....+.. ++.|...++-+|+++||.||
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence 99999999999999998655544433 23455557789999999997
No 233
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=1.1e-11 Score=122.68 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=63.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc----chh
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE----SFT 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE----sf~ 871 (923)
+|+|||++++|||||+|+|++.... ....+ .+ .+.. ..+|||||+. .+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~--------------~v----~~~~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQ--------------AV----EFND--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------Cccce--------------EE----EECC--CCcccCCccccCCHHHH
Confidence 4999999999999999998763211 00000 00 0000 1269999963 233
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+..++..+|++|||||++.+.......++.+ ..++|+|+|+||+|+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 333455789999999999987654433322221 2468999999999974
No 234
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.28 E-value=9.1e-12 Score=123.21 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=83.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
+||||.+|+|||+|+.+|....|+.. ++..+|..+.- +.+.. +.....|.||||.|++.|..+.+.
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~s----YitTiGvDfki--------rTv~i--~G~~VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGS----YITTIGVDFKI--------RTVDI--NGDRVKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccc----eEEEeeeeEEE--------EEeec--CCcEEEEEEeecccHHHHHHHHHH
Confidence 78999999999999999998777643 44455543321 11111 111234999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qti-EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
|++..+++|+|||++++-+.... .||..++.. .+|-|+|+||.|+.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 99999999999999997665444 455555443 46889999999974
No 235
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.4e-12 Score=135.07 Aligned_cols=119 Identities=31% Similarity=0.389 Sum_probs=85.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccc----cccceeeeccc---ccc--CCCCEEEEeCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN----IRERTRELKAN---ATL--KVPGLLVIDTP 865 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~----i~ekt~~I~~~---~~~--k~~~L~IIDTP 865 (923)
.+|..|||++.|||||...|...-...+ +..+..+.. ...+.++|.+. ..| ....+..+|||
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~---------~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKG---------GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhc---------cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 4699999999999999988864111000 000001100 01111222111 111 12348899999
Q ss_pred CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 866 GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
||.+|..++..+.-++|++||||.+.+|..+|+.+++.+.+..++| +|+++||||++
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv 141 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV 141 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc
Confidence 9999999999999999999999999999999999999999999997 78889999986
No 236
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.27 E-value=1.7e-11 Score=142.08 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc------
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs------ 869 (923)
.|+|||.+++|||||||+|+.........++.|..+....+ .+....|+||||||+..
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv----------------~~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVV----------------QAGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEE----------------EECCeEEEEEECCCCccccchhh
Confidence 49999999999999999998765433333333322211111 11223589999999642
Q ss_pred -hhhHHHhhccCCCEEEEEEeCCCCC----CHhHHHHH-----HHH----------HhcCCcEEEEEeCCCcC
Q 002428 870 -FTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESL-----NLL----------KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -f~nlrs~~ls~aDiVILVVDas~gl----e~qtiEsL-----~lL----------kk~~iP~IVVLNKIDLL 922 (923)
+.....+++..|++||||||++... ....+..| .++ .....|+|||+||||+.
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 2233456778899999999997411 11122211 111 22468999999999974
No 237
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.27 E-value=2.3e-11 Score=138.81 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcc-----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHES----- 869 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEs----- 869 (923)
-|+|||.+++||||||++|++.....+..++.|..+....+. +. ...|+||||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~----------------~~~~~~~~laD~PGliega~~~ 223 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVE----------------TDDGRSFVMADIPGLIEGASEG 223 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEE----------------EeCCceEEEEECCCCccccccc
Confidence 399999999999999999997654333333333222111110 11 23599999999642
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCC---CCHhHH-HHHHHHHh-----cCCcEEEEEeCCCc
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHG---LEPQTI-ESLNLLKM-----RNTEFIVALNKVRF 921 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~g---le~qti-EsL~lLkk-----~~iP~IVVLNKIDL 921 (923)
+...+.+++..|+++|||||++.. -....+ .++..|.. .++|+|||+||||+
T Consensus 224 ~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 224 VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 233444566779999999999753 112222 23333433 36899999999997
No 238
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=139.47 Aligned_cols=114 Identities=20% Similarity=0.315 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh---- 867 (923)
..++|+|||.|++|||||+|+|++.... .+...|+|....... ..+....|.||||.|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~----------------~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIE----------------FERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeee----------------EEECCeEEEEEECCCCCccc
Confidence 4678999999999999999999975532 334444444432222 2223345899999992
Q ss_pred ------cchhhH-HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ------ESFTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 ------Esf~nl-rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|... ....+..+|+||||+|++.++..|...++.++...+.++|||+||.|++
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 333333 3467788999999999999999999999999999999999999999986
No 239
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-11 Score=142.71 Aligned_cols=129 Identities=29% Similarity=0.391 Sum_probs=87.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cccC---------CCCcceeecceeeecccccccceeeeccc-----cccCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEG---------EAGGITQQIGATYFPAENIRERTRELKAN-----ATLKV 856 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn--Vq~g---------eagGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~ 856 (923)
-...|+|+||+++|||||+.+|+..- +... ...|-.. +...++-..+..++.+++.-. ..-..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~S-f~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSS-FAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcc-eeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 45569999999999999999997411 1000 0001011 111111122222222222211 11123
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-------le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
..++|||+|||-.|...+..+..++|++|||||++.+ +..|+.++..+++..++ .+||++||+|++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 4599999999999999999999999999999999964 35799999999999997 699999999986
No 240
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=3.3e-11 Score=126.25 Aligned_cols=114 Identities=22% Similarity=0.320 Sum_probs=78.8
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG 866 (923)
+.+......+|+|+|++|+|||||++.|++..... .+....|..+ + .......|+||||||
T Consensus 32 r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~------------i---~~~~~~~i~~vDtPg 92 (225)
T cd01882 32 RTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPIT------------V---VTGKKRRLTFIECPN 92 (225)
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEE------------E---EecCCceEEEEeCCc
Confidence 33444445679999999999999999998642110 0111111000 0 001234589999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDLL 922 (923)
+. ......+..+|+||||+|++.++..++..++..+...++|.+ +|+||+|++
T Consensus 93 ~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 93 DI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred hH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 64 333455788999999999999998888888888888889954 599999985
No 241
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=1.1e-11 Score=127.06 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.+.|+|+|+.|+|||+|+.+|........ ...+.+.++. ++ ..-....+.|||+|||..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T-~tS~e~n~~~-~~---------------~~~~~~~~~lvD~PGH~rlr~~ 65 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT-VTSMENNIAY-NV---------------NNSKGKKLRLVDIPGHPRLRSK 65 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEEC-CG---------------SSTCGTCECEEEETT-HCCCHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe-eccccCCceE-Ee---------------ecCCCCEEEEEECCCcHHHHHH
Confidence 46799999999999999999987643211 0111111100 00 0112345999999999988765
Q ss_pred HHh---hccCCCEEEEEEeCCCCCCHh---HHHH----HHHHH--hcCCcEEEEEeCCCcC
Q 002428 874 RSR---GSGLCDIAILVVDIMHGLEPQ---TIES----LNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~---~ls~aDiVILVVDas~gle~q---tiEs----L~lLk--k~~iP~IVVLNKIDLL 922 (923)
... ++..+.+||||||++. +... .-++ |.... ...+||+|++||.|++
T Consensus 66 ~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 66 LLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 444 4788999999999874 1111 1111 21122 2468999999999985
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=3.3e-11 Score=130.29 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=74.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl- 873 (923)
.+|+|+|++|+|||||||+|++..+........ + ....+.++..+......+.. .-....|+||||||+..+.+.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~-~-~~~~~~~T~~i~~~~~~i~~--~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPD-P-AEEHIDKTVEIKSSKAEIEE--NGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCC-c-cccccCCceEEEEEEEEEEE--CCEEEEEEEEecCCccccccch
Confidence 469999999999999999999877653211000 0 00000000000000001100 000124999999996543221
Q ss_pred --------------------HH-----hhc--cCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 --------------------RS-----RGS--GLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 --------------------rs-----~~l--s~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.. ..+ ..+|+|||+|+.+ +++....+.++..+.. ++|+|+|+||+|++
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l 156 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTL 156 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcC
Confidence 00 111 2478999999987 4788888888888875 89999999999985
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.25 E-value=2.9e-11 Score=123.53 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh--
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n-- 872 (923)
++|+|+|.+|+|||||||.|++...... +.++ ++..... .. ...+.. ...+.+.||||||+..+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~--~~~~~~t----~~-~~~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAP--TGVVETT----MK-RTPYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Cccc--cCccccc----cC-ceeeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999998554321 0011 1100000 00 000000 1134699999999753221
Q ss_pred ---HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ---LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ---lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+....+..+|++|+|.+ .++......++..+...+.|+|||+||||++
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 22334677899888854 4567777778888888889999999999985
No 244
>PRK12740 elongation factor G; Reviewed
Probab=99.25 E-value=1.3e-11 Score=147.61 Aligned_cols=123 Identities=27% Similarity=0.307 Sum_probs=83.7
Q ss_pred EcCCCCCHHHHHHHHHcCccccCCCCcceee-cceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhhHHHhh
Q 002428 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-IGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTNLRSRG 877 (923)
Q Consensus 800 LG~~GSGKSTLLN~LlgtnVq~geagGIT~q-Igat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~nlrs~~ 877 (923)
|||+|+|||||+++|+...-.....+.+... ....+......+..+.... ....+....|+|||||||..|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999997542211100001000 0001111111111111110 1123445669999999999999889999
Q ss_pred ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 878 SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 878 ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+|++|||||++.+...++..+|..+...++|+|||+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999999999999998898888888888899999999999985
No 245
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.23 E-value=2.2e-11 Score=125.84 Aligned_cols=115 Identities=21% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+..+|+|+|.+|+|||+|+.+|++..|... +.+++...|.....+. -....|.|+||+|++.|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~----y~ptied~y~k~~~v~-----------~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED----YDPTIEDSYRKELTVD-----------GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc----cCCCccccceEEEEEC-----------CEEEEEEEEcCCCcccChH
Confidence 456799999999999999999998877644 2333332222211111 1113388999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHH-HH----HhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~-lL----kk~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|+||++++..+.+....|. .+ ....+|+|+|+||+||.
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 9999999999999999999876655554332 22 12358999999999985
No 246
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.22 E-value=6e-11 Score=120.60 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCC--CCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh--
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~ge--agGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~-- 871 (923)
+|+|+|.+|+|||||+|.|++..+.... ..+.|..+..... .+....|+||||||..++.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~----------------~~~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESA----------------VWDGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeE----------------EECCeEEEEEECcCCCCccCC
Confidence 5999999999999999999987654221 1223332211111 1122459999999965442
Q ss_pred -----hHH----HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCcEEEEEeCCCcC
Q 002428 872 -----NLR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVRFS 922 (923)
Q Consensus 872 -----nlr----s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-----~iP~IVVLNKIDLL 922 (923)
..+ ......+|+||||+++.+ +......++..+... ..++|||+|++|.+
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 111 123467899999999987 777777777666543 25789999999865
No 247
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.21 E-value=4.8e-11 Score=135.74 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
...|+|+|.||+|||||||.|++.... ....+|.|.++-..+ ..+..+.+.|+||.|.-....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~----------------i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEED----------------INLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEE----------------EEECCEEEEEEecCCcccCcc
Confidence 345899999999999999999987654 233344444432222 233445699999999654433
Q ss_pred HH--------HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LR--------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lr--------s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.. ...+..+|+||||+|+++.+......++. +...+.|+|+|+||+||.
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 22 24578899999999999987777777766 556678999999999985
No 248
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.20 E-value=5.8e-11 Score=119.26 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
-|.++|+|+|..|+|||||+++|++... ..+.+.+|+.... ..+..+.|+|||..|+-.+.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEE--------------EEecceEEEEEEcCCcchhH
Confidence 3467899999999999999999987542 1233443332211 12334669999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCC-HhHHHHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle-~qtiEsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
.+|.+|+...|++|||||.++... ..+...|..+ +..+.|++|++||.|+.
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 999999999999999999987432 3334444322 22368999999999974
No 249
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.1e-11 Score=143.25 Aligned_cols=130 Identities=30% Similarity=0.324 Sum_probs=94.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec---cccccCCCCEEEEeCCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK---ANATLKVPGLLVIDTPG 866 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~---~~~~~k~~~L~IIDTPG 866 (923)
..+|| |.|+-|.++|||||..+++.........+.+-.. ++++......+.+...|. ....|..+.|+||||||
T Consensus 37 ~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 37 NKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPG 113 (721)
T ss_pred hhhcc--cceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCC
Confidence 46777 8999999999999999998644321111111000 111111111111111111 11234456799999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.+|.....+.++..|++|+|+++..|+..|+...+++++++++|.|+++||+|++
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM 169 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc
Confidence 99999999999999999999999999999999999999999999999999999986
No 250
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.18 E-value=1.2e-10 Score=114.01 Aligned_cols=123 Identities=23% Similarity=0.318 Sum_probs=75.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccccc-c-----c-------ce-----------------e
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI-R-----E-------RT-----------------R 846 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i-~-----e-------kt-----------------~ 846 (923)
|+|+|..++|||||||+|++..+.......+|..+.......... . . .. .
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999998865443333333322211110000 0 0 00 0
Q ss_pred ----------eeccccccCCCCEEEEeCCCCcch----hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHH-HHHhcCCc
Q 002428 847 ----------ELKANATLKVPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKMRNTE 911 (923)
Q Consensus 847 ----------~I~~~~~~k~~~L~IIDTPGhEsf----~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~-lLkk~~iP 911 (923)
.+.........++.||||||..+. ..++..++..+|+||||+++.+.+.......|. .+....-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 000001123356999999996432 246778889999999999999977655555554 44444566
Q ss_pred EEEEEeCC
Q 002428 912 FIVALNKV 919 (923)
Q Consensus 912 ~IVVLNKI 919 (923)
+|||+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999985
No 251
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.17 E-value=1.8e-10 Score=121.43 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=53.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch-----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf----- 870 (923)
+|+|+|++|+|||||+++|.+.....+...+.|..+.... ..+....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~----------------~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGV----------------LEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEE----------------EEECCeEEEEEECCCcccccccch
Confidence 5899999999999999999986543332222221111000 1112235899999997532
Q ss_pred --hhHHHhhccCCCEEEEEEeCCC
Q 002428 871 --TNLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 871 --~nlrs~~ls~aDiVILVVDas~ 892 (923)
...+..+++.+|++|+|+|+++
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 2344567899999999999875
No 252
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.8e-11 Score=117.27 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=86.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
.+|||..|+|||+||..|....|...+...|...+|..++..... ...|.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq--------------kiklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ--------------KIKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc--------------EEEEEEeecccHHHHHHHHHH
Confidence 679999999999999999988887666555666665554433221 134899999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHhHHHHHH----HHHhcCCcEEEEEeCCCcC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQTIESLN----LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qtiEsL~----lLkk~~iP~IVVLNKIDLL 922 (923)
|++.+-++|+|||++.+.....+.+|. .|.+.+..+|+++||.||-
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 999999999999999876655554442 2334466789999999973
No 253
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=6.6e-10 Score=118.50 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=83.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeeccee-----------eecccc--------cccc----ee-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-----------YFPAEN--------IRER----TR- 846 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat-----------~~p~e~--------i~ek----t~- 846 (923)
.+.-|.|+|||+.|+||||||++|++..+.....+.+|...... ++.... +... +.
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 46678899999999999999999998764322223333211110 000000 0000 00
Q ss_pred ------eecc---cc---ccCCCCEEEEeCCCCcch-------------hhHHHhhccC-CCEEEEEEeCCCCCCHhH-H
Q 002428 847 ------ELKA---NA---TLKVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 899 (923)
Q Consensus 847 ------~I~~---~~---~~k~~~L~IIDTPGhEsf-------------~nlrs~~ls~-aDiVILVVDas~gle~qt-i 899 (923)
.+.. .+ ....+.|+||||||.... ..+...|+.. .++||+|+|+..++..+. +
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 0000 00 012367999999997421 2245567774 459999999988877766 5
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 900 ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 900 EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+++.+...+.|+|+|+||+|++
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 77788888899999999999985
No 254
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.13 E-value=4.2e-11 Score=119.65 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.-+..|+++|...+|||+|+-++....|..... .++.+.|...... +. -....|.||||.|++.|.
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl----sTlQASF~~kk~n------~e----d~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL----STLQASFQNKKVN------VE----DCRADLHIWDTAGQERFH 76 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhH----HHHHHHHhhcccc------cc----cceeeeeeeeccchHhhh
Confidence 345679999999999999999998877653211 1122222211110 10 012359999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHH----HHHHhcCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL----~lLkk~~iP~IVVLNKIDL 921 (923)
.+-..||+.++++||||||+++-+++-...| +.+....+-++||+|||||
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL 130 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL 130 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH
Confidence 9999999999999999999997766655433 2333445789999999997
No 255
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-10 Score=126.02 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=79.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
+++.|+.+|+|||.+|+|||||+|.+++..+... ....++++.++.++. .-...+++|+||||..
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~v------------S~K~~TTr~~ilgi~---ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV------------SRKVHTTRHRILGII---TSGETQLVFYDTPGLV 131 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccc------------cccccceeeeeeEEE---ecCceEEEEecCCccc
Confidence 4577888999999999999999999999876521 111122222222221 1223469999999933
Q ss_pred ch------------hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-CCcEEEEEeCCCcC
Q 002428 869 SF------------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf------------~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-~iP~IVVLNKIDLL 922 (923)
.- .......+..+|+||+|+|++....+.....|..+... ++|-|+|+||+|.+
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 21 11223567889999999999864344444455545443 68999999999975
No 256
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.7e-10 Score=126.54 Aligned_cols=122 Identities=27% Similarity=0.405 Sum_probs=92.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-------cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn-------Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG 866 (923)
|.+|.|+||+++|||||..+|.... -+.+...|||-++|..++....... + ..-...++.+||+||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----L---pq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----L---PQGEQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----c---CccccceeEEEeCCC
Confidence 4679999999999999999996421 1233446777777766554332211 1 011124589999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.++...+..+....|++|||||+..|...|+.+.|.+-...-...|||+||+|++
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 99999999999999999999999999999999998766555445689999999976
No 257
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.12 E-value=1.7e-10 Score=136.71 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=73.0
Q ss_pred cCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH------H
Q 002428 801 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 874 (923)
Q Consensus 801 G~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl------r 874 (923)
|.+|+|||||+|+|++.++..++.+|+|.......+.. ....++||||||+.++... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~----------------~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF----------------QGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE----------------CCeEEEEEECCCccccCccchHHHHH
Confidence 88999999999999987766565666555433222211 1234899999999877543 2
Q ss_pred Hhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++ ..+|+||+|+|+++ + ...+..+..+...++|+|||+||+|+.
T Consensus 65 ~~~l~~~~aDvvI~VvDat~-l-er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASN-L-ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHhhcCCCEEEEEecCCc-c-hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 2232 47899999999987 2 233444555666789999999999973
No 258
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.2e-10 Score=129.50 Aligned_cols=112 Identities=36% Similarity=0.430 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++|+.+||.+.|||||+..|.+..- ......|+|.+++..|++.... .+.|||+|||+.|.
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i 64 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFI 64 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHH
Confidence 4689999999999999999986442 2334568888888888775433 38999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDLL 922 (923)
..+..++..+|++||||++..|+..|+.++|..|...+++- |||+||+|+.
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 99999999999999999999999999999999999999875 9999999986
No 259
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.10 E-value=6.1e-11 Score=127.20 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=46.4
Q ss_pred CEEEEeCCCCcchhhH-------H-HhhccCCCEEEEEEeCCCCCCHhHHH-----HHHHHHhcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNL-------R-SRGSGLCDIAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nl-------r-s~~ls~aDiVILVVDas~gle~qtiE-----sL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++||||||+...... + .-.....-+|+||+|..+...+.++. .+.+|.+..+|+|||+||+|+.
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 4899999997543211 1 12335677999999988765555543 3456778899999999999974
No 260
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.5e-11 Score=136.77 Aligned_cols=133 Identities=26% Similarity=0.259 Sum_probs=97.6
Q ss_pred CCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecc-eeeecccccccceeeec-----cccccCCC
Q 002428 784 TPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-ATYFPAENIRERTRELK-----ANATLKVP 857 (923)
Q Consensus 784 l~~~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIg-at~~p~e~i~ekt~~I~-----~~~~~k~~ 857 (923)
+.+..+..+|| |.||.|.++||||...+|+...-..-..+.+...-. ..|+... +.++|. ....|..+
T Consensus 29 ~~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~e----rergitiqsaav~fdwkg~ 102 (753)
T KOG0464|consen 29 IINPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIE----RERGITIQSAAVNFDWKGH 102 (753)
T ss_pred CCCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHH----HhcCceeeeeeeecccccc
Confidence 33444567888 899999999999999999863321111111111000 1111111 112221 22456667
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+++||||||.+|.....+.++..|++|.|||++.|+.+|++.+|++...+++|-++++||||.+
T Consensus 103 rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 103 RINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL 167 (753)
T ss_pred eEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999975
No 261
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.5e-10 Score=126.98 Aligned_cols=115 Identities=32% Similarity=0.359 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------cCCCCcceeecceeeecccccccceeeeccccccC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq----------------~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k 855 (923)
...++|.-|||++.|||||...|....-. ...+.|||.+... +.+...
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aH--veYeTa-------------- 115 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAH--VEYETA-------------- 115 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeee--eeeecc--------------
Confidence 34566999999999999999988642111 1122333332211 111111
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
...+--+|||||.+|..++..+..+.|++||||.+++|..+|+.++|.+.++.+++ +||++||+|++
T Consensus 116 ~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 116 KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV 183 (449)
T ss_pred ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc
Confidence 12366799999999999999999999999999999999999999999999999986 88899999986
No 262
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.06 E-value=7.3e-10 Score=130.70 Aligned_cols=112 Identities=25% Similarity=0.312 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+..+|+++|+||||||||+|+|++.+...++.+|+|...-..++.. ....+.|||+||..++..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~----------------~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY----------------KGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe----------------cCceEEEEeCCCcCCCCC
Confidence 3456999999999999999999999999999999887654443332 234489999999776643
Q ss_pred H------HHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L------RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l------rs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ..+++ ..+|+||.|+|+++ +. ..+.+..++...++|+|+++|.+|..
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn-Le-RnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN-LE-RNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch-HH-HHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 2 22333 46799999999986 33 33334445667799999999999963
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.05 E-value=1.2e-09 Score=128.67 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCEEEEeCCCCcc-----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC--CcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEs-----f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~--iP~IVVLNKIDLL 922 (923)
.+|+||||||... +...+...+..+|+||||||+++.+......++..+...+ .|+|+|+||||++
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 4699999999643 2334556789999999999999888888888888887776 5999999999974
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.05 E-value=4.5e-10 Score=121.06 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=83.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs- 869 (923)
.....+|+|+|.+|+|||||||+|++.++..-. .++.+..+..... ..+....++||||||..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~~---------~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRLR---------LSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhHH---------hhccccceEEecCCCcccc
Confidence 445667889999999999999999987765322 2222222211111 112234599999999765
Q ss_pred ------hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 870 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 870 ------f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
+..+...++...|++++++++.++.......+++.+... ..|+|+|+|.+|+.
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 666777889999999999999987776666666644332 47999999999985
No 265
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.05 E-value=3.9e-10 Score=111.77 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC----Ccchh
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG----hEsf~ 871 (923)
+|+|||++|+|||||+++|.+..+... .|+.+. +.-.+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~------------------------~~~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIE------------------------YYDNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeE------------------------ecccEEECChhheeCHHHH
Confidence 599999999999999999988554311 121110 1125699999 33445
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.........||+|+||+|++......-. .+...++.|+|-|+||+|+.
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 5555566789999999999975432222 23344578999999999985
No 266
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.04 E-value=1.7e-10 Score=131.50 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=80.2
Q ss_pred CccccCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCC
Q 002428 778 EPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (923)
Q Consensus 778 ~r~~~~l~~~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~ 857 (923)
++|+..++...++ +|+ +||||.+++|||||+|.+....+....+...|..+. ...+.|.+.
T Consensus 155 rqhl~rlPsIDp~-trT--lllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~----------------vGH~dykYl 215 (620)
T KOG1490|consen 155 RQHLSRLPAIDPN-TRT--LLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL----------------VGHLDYKYL 215 (620)
T ss_pred HHHHhcCCCCCCC-cCe--EEEecCCCCCcHhhcccccccccccCCcccccchhh----------------hhhhhhhee
Confidence 6788888777655 444 999999999999999999876654333333332221 122334445
Q ss_pred CEEEEeCCCCcch----hhHH-----HhhccCCCEEEEEEeCCCCCCHhHHHHHHH---HHh--cCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESF----TNLR-----SRGSGLCDIAILVVDIMHGLEPQTIESLNL---LKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf----~nlr-----s~~ls~aDiVILVVDas~gle~qtiEsL~l---Lkk--~~iP~IVVLNKIDLL 922 (923)
.+++|||||+.+. .|.+ ....++--+|||++|++..+.......+.+ ++. .+.|+|||+||||++
T Consensus 216 rwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAM 294 (620)
T ss_pred eeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccccc
Confidence 6999999995332 1111 122355567999999987444333322222 222 278999999999986
No 267
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.03 E-value=2.6e-10 Score=113.01 Aligned_cols=110 Identities=21% Similarity=0.242 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
..+.++|..++|||||+|.++...+... +.++.|+....+. -....+.+||.||+..|..+|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~t--------------kgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVT--------------KGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEec--------------cCceEEEEEecCCCccHHHHH
Confidence 4588999999999999998876544322 4444444322211 112348999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCC--CCHhHHHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~g--le~qtiEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.+|++.|++||||||+.+. ++..-.++..+|.. .++|++|++||+|+.
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 9999999999999999872 22222333334432 379999999999974
No 268
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=5.2e-10 Score=122.28 Aligned_cols=127 Identities=29% Similarity=0.385 Sum_probs=90.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc---cCCCCcceeecceeeec----ccccccceeeeccccccC--------CCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFP----AENIRERTRELKANATLK--------VPG 858 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq---~geagGIT~qIgat~~p----~e~i~ekt~~I~~~~~~k--------~~~ 858 (923)
..+|.++||++.|||||+.+|.+.-.. ..-..+|+..+|....+ ..+... ..+.....+. ...
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~--~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP--ECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC--cccccCCCCCCCCCCccEEEE
Confidence 467999999999999999999763211 22235566666542211 111110 0010000111 123
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC-CCCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~-gle~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
+.|+|+|||+-++..+..+....|++||||.++. +..+||.++|..|.-+++ .+|||-||+||+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 8999999999999999999999999999999997 557999999999888876 699999999986
No 269
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.01 E-value=8.7e-10 Score=110.92 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=83.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
.+++|||.+-+|||+||..|....+..- ..+++|..++..... + . +-....|+||||.|++.|..++
T Consensus 9 frlivigdstvgkssll~~ft~gkfael----sdptvgvdffarlie------~--~-pg~riklqlwdtagqerfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL----SDPTVGVDFFARLIE------L--R-PGYRIKLQLWDTAGQERFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccccc----CCCccchHHHHHHHh------c--C-CCcEEEEEEeeccchHHHHHHH
Confidence 4689999999999999999998777532 234455544432111 0 0 0011349999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc------CCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------NTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~------~iP~IVVLNKIDLL 922 (923)
..|++++-++++|||++++.+...+..|..-..+ ++-|.+|++|+||.
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 9999999999999999987666666544322222 34488999999984
No 270
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=3.1e-09 Score=113.72 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=71.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccC-CCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g-eagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
....++|+|+|.+|+|||||+|+|++..+... ...+.|..+... ...+....|.||||||+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~----------------~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREV----------------SGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEE----------------EEEECCeEEEEEECCCcCc
Confidence 34456799999999999999999998764321 111122211100 0112234599999999765
Q ss_pred hh-----h-----HHHhhcc--CCCEEEEEEeCCC-CCCHhHHHHHHHHHh-c----CCcEEEEEeCCCcC
Q 002428 870 FT-----N-----LRSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-R----NTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~-----n-----lrs~~ls--~aDiVILVVDas~-gle~qtiEsL~lLkk-~----~iP~IVVLNKIDLL 922 (923)
.. + .+.+++. ..|+||||+.+.. ++......++..+.. + -.++|||+|++|.+
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 42 1 1222332 5788888876653 445555555555543 2 25799999999975
No 271
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.7e-09 Score=118.24 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=89.3
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCc--ceeecce-eeecccc-cccceeeeccc-----------
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGA-TYFPAEN-IRERTRELKAN----------- 851 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagG--IT~qIga-t~~p~e~-i~ekt~~I~~~----------- 851 (923)
.+++-...|.|+++|+..+||||||++|+...++....|. .|..+.. .+-+... +......+...
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 3445566789999999999999999999988876332221 1111111 1111110 00000001000
Q ss_pred --------ccc---CCCCEEEEeCCCCc-----------chhhHHHhhccCCCEEEEEEeCCC-CCCHhHHHHHHHHHhc
Q 002428 852 --------ATL---KVPGLLVIDTPGHE-----------SFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMR 908 (923)
Q Consensus 852 --------~~~---k~~~L~IIDTPGhE-----------sf~nlrs~~ls~aDiVILVVDas~-gle~qtiEsL~lLkk~ 908 (923)
..+ ....++||||||+- .|...+......||+||||||+.. .+...+.++|..|+.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 000 11249999999943 455666777889999999999864 5778889999999999
Q ss_pred CCcEEEEEeCCCcC
Q 002428 909 NTEFIVALNKVRFS 922 (923)
Q Consensus 909 ~iP~IVVLNKIDLL 922 (923)
.-.+-|||||.|.+
T Consensus 211 EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 211 EDKIRVVLNKADQV 224 (532)
T ss_pred cceeEEEecccccc
Confidence 88999999999975
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.1e-10 Score=113.67 Aligned_cols=112 Identities=23% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
....+|+++|--++||||+|..|-...+... .+++|+. .+. ..|....|.+||..|+..+.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfn---VE~-----------v~ykn~~f~vWDvGGq~k~R 75 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFN---VET-----------VEYKNISFTVWDVGGQEKLR 75 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccc---eeE-----------EEEcceEEEEEecCCCcccc
Confidence 4456799999999999999999976554321 2223221 111 12334569999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gl--e~qtiEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.+|..|++.++++|||||.+++. ...-.++..++.. .++|++|+.||.|+.
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 99999999999999999999742 2222223333332 368999999999974
No 273
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.94 E-value=3.5e-09 Score=105.72 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch-h
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-T 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf-~ 871 (923)
+.++|+|+|..++|||.||..|+..+...+. .+.++|..+|+-...... -....|.|+||.|.... .
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~--e~~pTiEDiY~~svet~r----------garE~l~lyDTaGlq~~~~ 75 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGT--ELHPTIEDIYVASVETDR----------GAREQLRLYDTAGLQGGQQ 75 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCC--ccccchhhheeEeeecCC----------ChhheEEEeecccccCchh
Confidence 4577999999999999999999876654221 122223222322111110 11234999999997776 5
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh-----cCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-----RNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk-----~~iP~IVVLNKIDL 921 (923)
.+-..|++.+|+++|||+.++..+.+..+.|..-.. ..+||+|++|++||
T Consensus 76 eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr 130 (198)
T KOG3883|consen 76 ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR 130 (198)
T ss_pred hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc
Confidence 567788999999999999998655555555432221 25899999999998
No 274
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.7e-10 Score=126.05 Aligned_cols=131 Identities=25% Similarity=0.287 Sum_probs=89.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccC-----C-----------CCcceeecceeeecccccccceeeeccccc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----E-----------AGGITQQIGATYFPAENIRERTRELKANAT 853 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g-----e-----------agGIT~qIgat~~p~e~i~ekt~~I~~~~~ 853 (923)
.|+|| +.||.|++.|||||.++|+...-... + ..+||....+..+...........+.....
T Consensus 17 ~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 17 KNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred ccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 47888 77899999999999999986432211 1 011221111111111100000001111111
Q ss_pred cCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
....-|+|||.|||.+|+......++..|++|+|||+..|+--|+...|++....++.-++|+||+|+.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 122348999999999999999999999999999999999999999999998888787778899999985
No 275
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=107.23 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
-|.++|+++|-.++||||||..|.+..+.. +++.-|+..... ..... ..|+|||..|+....
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v----------~~~g~---f~LnvwDiGGqr~IR 76 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKV----------EYDGT---FHLNVWDIGGQRGIR 76 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEE----------eecCc---EEEEEEecCCccccc
Confidence 567889999999999999999998755432 444444322221 11112 349999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCC--CCHhHHHHHHHH---HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~g--le~qtiEsL~lL---kk~~iP~IVVLNKIDLL 922 (923)
..|+.|+...|++|||||.++. +.....++..++ +...+|++|..||.||+
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 9999999999999999997763 222222222333 33468999999999986
No 276
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.92 E-value=5.8e-09 Score=110.89 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH--
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 873 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl-- 873 (923)
+|+++|+.++||||+...|+....+. -|..++.+..... ..+ ..+....|.|||+||+..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----dT~~L~~T~~ve~------~~v---~~~~~~~l~iwD~pGq~~~~~~~~ 66 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----DTLRLEPTIDVEK------SHV---RFLSFLPLNIWDCPGQDDFMENYF 66 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----GGGG-----SEEE------EEE---ECTTSCEEEEEEE-SSCSTTHTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----hccccCCcCCceE------EEE---ecCCCcEEEEEEcCCccccccccc
Confidence 58999999999999999998754321 1223322221110 000 0112235999999999876554
Q ss_pred ---HHhhccCCCEEEEEEeCCCCCCHhHHHHH----HHHH--hcCCcEEEEEeCCCcC
Q 002428 874 ---RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 ---rs~~ls~aDiVILVVDas~gle~qtiEsL----~lLk--k~~iP~IVVLNKIDLL 922 (923)
+...++.|.++|||||+...-....+..+ ..+. ..++.|.|+++|+|++
T Consensus 67 ~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 67 NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 56678999999999999843333333332 2232 3368899999999986
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.92 E-value=9e-09 Score=113.46 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=70.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
+...++|+|+|.+|+|||||+|+|++..+..... + .+.++.+.... ..+....|.||||||+.+.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~--f---~s~t~~~~~~~----------~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA--F---QSEGLRPMMVS----------RTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccC--C---CCcceeEEEEE----------EEECCeEEEEEECCCCCch
Confidence 4667789999999999999999999877532110 0 00011110000 0112345999999997654
Q ss_pred hhH-------HHhhc--cCCCEEEEEEeCCC-CCCHhHHHHHHHHHhc-----CCcEEEEEeCCCcC
Q 002428 871 TNL-------RSRGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKMR-----NTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nl-------rs~~l--s~aDiVILVVDas~-gle~qtiEsL~lLkk~-----~iP~IVVLNKIDLL 922 (923)
... ...++ ..+|+||||+.+.. ++......++..+... ..++|||+|++|.+
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 221 11111 25899999966543 4544444444443322 35799999999965
No 278
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.87 E-value=1.6e-09 Score=112.47 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.+.|+|+|...+|||+||..+....|+....+.+..+.... +... .-....|.||||.|+++|.
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-------------v~V~-dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-------------VTVD-DGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-------------EEec-CCCEEEEeeeecCCCcccc
Confidence 3567899999999999999999887766544222222111110 1110 0112348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qt--iEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.+|.-.++.+|++|++|++....+... ..|+-.++.+ ++|+|||++|.||.
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 999889999999999999987544332 2233344433 69999999999984
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.86 E-value=9.5e-09 Score=106.75 Aligned_cols=110 Identities=22% Similarity=0.170 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCC--CcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh--
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~gea--gGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~-- 871 (923)
+|+|||.+|+|||||+|.|++..+..... ..+|..+..... .+....|.||||||+.+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~----------------~~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG----------------EVDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE----------------EETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee----------------eecceEEEEEeCCCCCCCccc
Confidence 69999999999999999999987653211 122221111100 1222459999999954321
Q ss_pred -----hHHH----hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCcEEEEEeCCCcC
Q 002428 872 -----NLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVRFS 922 (923)
Q Consensus 872 -----nlrs----~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-----~iP~IVVLNKIDLL 922 (923)
..+. .....+|++|||+.+. ++.......+..+... -..+|||++..|.+
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 1111 2345689999999988 6777666666655432 23588898887754
No 280
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.86 E-value=5.4e-09 Score=113.78 Aligned_cols=123 Identities=23% Similarity=0.278 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl- 873 (923)
.+|+|+|.+|+|||||||.|++..+...... +... .........+......+... .....|+||||||+....+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~e~--~~~l~LtiiDTpGfGd~i~n~ 80 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSS-IPPP-SASISRTLEIEERTVELEEN--GVKLNLTIIDTPGFGDNIDNS 80 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S-------SCEEEEEEEEEEEET--CEEEEEEEEEEC-CSSSSTHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccccc-cccc-ccccccccceeeEEEEeccC--CcceEEEEEeCCCccccccch
Confidence 4699999999999999999998765432100 0000 00000000111111111110 11124999999995432111
Q ss_pred --H-----------Hhhc-------------cCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 --R-----------SRGS-------------GLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 --r-----------s~~l-------------s~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+ ..++ ..+|+|||+|.++ +++.+..+..|..|.. .+++|-|+.|+|.+
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEeccccc
Confidence 0 0011 3468999999986 6899999998888766 58999999999986
No 281
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.5e-08 Score=117.55 Aligned_cols=77 Identities=39% Similarity=0.509 Sum_probs=38.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccccchHHHHHHH
Q 002428 514 VREMQEALA-RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE--KLLKKKQEGKLLTGKQKEEAR 590 (923)
Q Consensus 514 ~~~~qe~l~-~~keeEE~~kreEEEr~rreEEE~~~~eEeer~~eE~k~~kkekeke--kke~~KkEGKlLTkKQKeeka 590 (923)
|+..|++.+ +.|++||+.++++||+++++++|++..|..+++ .+..+.++++.+. +....++..- .++.++.
T Consensus 223 La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kk-Kekekek~er~KaeGklLTakQK~~----~a~aea~ 297 (1064)
T KOG1144|consen 223 LAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKK-KEKEKEKKERKKAEGKLLTAKQKEE----AALAEAF 297 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccchHhhHHH----HHHHHHH
Confidence 333343333 344667777778888877777666443333333 3333333333332 4444444432 4555555
Q ss_pred HHHHH
Q 002428 591 RLEAM 595 (923)
Q Consensus 591 r~ea~ 595 (923)
+++++
T Consensus 298 l~~ll 302 (1064)
T KOG1144|consen 298 LKQLL 302 (1064)
T ss_pred HHHHH
Confidence 55444
No 282
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=4.2e-09 Score=112.06 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcchhhHHHhhc--------cCCCEEEEEEeCCCCCCHhHHHH-----HHHHHhcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIES-----LNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~l--------s~aDiVILVVDas~gle~qtiEs-----L~lLkk~~iP~IVVLNKIDLL 922 (923)
.++|||||||..+...+.... ...-++|+++|+.....+..+-. +..+.+.++|+|+|+||+|++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 599999999887765544332 33458999999886555444332 234455699999999999986
No 283
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.83 E-value=1.1e-09 Score=107.13 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=78.8
Q ss_pred EEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHhhc
Q 002428 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (923)
Q Consensus 799 VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~~l 878 (923)
++|.+++|||+||-+|-...|..++ +...+|..|...- | .+.-....|+||||.|++.|...+..|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~---fistvgid~rnkl--------i--~~~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN---FISTVGIDFRNKL--------I--DMDDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc---eeeeeeeccccce--------e--ccCCcEEEEEEeeccchHHHhhhhHhhh
Confidence 6899999999999887665554321 2233333332211 1 1111224599999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 879 GLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 879 s~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+.+|.++||||+.+..+....+ ||..+.. ..+.+.+++||||+.
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 9999999999999877665544 4444443 357889999999984
No 284
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=111.74 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=69.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcce--eecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-----
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT--~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs----- 869 (923)
|.+||.|++||||||++|.......+.+..+| +.+|. +.+. . ...|.|-|.||+..
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~--v~yd-------------d--f~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT--VNYD-------------D--FSQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccce--eecc-------------c--cceeEeccCcccccccccc
Confidence 78999999999999999987554433333322 23321 1111 1 12389999999542
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCCC--CH-hHHHHH-HHHHhc-----CCcEEEEEeCCCc
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHGL--EP-QTIESL-NLLKMR-----NTEFIVALNKVRF 921 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~gl--e~-qtiEsL-~lLkk~-----~iP~IVVLNKIDL 921 (923)
+.....+++..|++++||||++.+. ++ +.+..| ..|..+ ..|.+||+||||+
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 2334557788899999999999862 22 222222 222222 4799999999997
No 285
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-08 Score=115.64 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=77.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
+.|+|+|.+|+|||||||.|....+. .+..+|+|.+..... .++....++|+||.|.-.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~----------------v~~~G~~v~L~DTAGiRe~~~~ 332 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQ----------------VTVNGVPVRLSDTAGIREESND 332 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeE----------------eecCCeEEEEEeccccccccCC
Confidence 66999999999999999999986654 334444444432222 233445699999999543
Q ss_pred ----hh-hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc------------CCcEEEEEeCCCcC
Q 002428 870 ----FT-NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVRFS 922 (923)
Q Consensus 870 ----f~-nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~------------~iP~IVVLNKIDLL 922 (923)
.. ......+..+|+|+||||++.+...+...+.+.+... ..|+|+++||+|+.
T Consensus 333 ~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 333 GIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred hhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 11 1223567889999999999876665555554444322 26899999999985
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.79 E-value=1.2e-08 Score=115.12 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-C-CCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~-g-eagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..+|+|+|.+|+|||||||.|++..-.. + ...|++ .++.. ...+.....|.++|||+||.....
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~----------etT~~----~~~Y~~p~~pnv~lWDlPG~gt~~ 100 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV----------ETTME----PTPYPHPKFPNVTLWDLPGIGTPN 100 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH----------SCCTS-----EEEE-SS-TTEEEEEE--GGGSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC----------cCCCC----CeeCCCCCCCCCeEEeCCCCCCCC
Confidence 3469999999999999999998743211 1 111111 00111 111112334679999999954322
Q ss_pred h-----HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 872 N-----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 872 n-----lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
. +-...+..+|++|+|.+ .++......++..+..++.||++|.||+|.
T Consensus 101 f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 101 FPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 1 22345678998887765 456788888889999999999999999996
No 287
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=4.4e-09 Score=107.17 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=84.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
+--|.+.++|+|..++||||||.+++..-|... ....||..+...... .+ .....+.+|||.|++.
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkd----ykktIgvdflerqi~-----v~-----~Edvr~mlWdtagqeE 81 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKD----YKKTIGVDFLERQIK-----VL-----IEDVRSMLWDTAGQEE 81 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccc----cccccchhhhhHHHH-----hh-----HHHHHHHHHHhccchh
Confidence 445677899999999999999999986554322 333444433322110 00 0112378899999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
|..++..|++++.++|||+..+++.+..... |.+.+.. ..||.+||-|||||+
T Consensus 82 fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 82 FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 9999999999999999999999866554433 3333322 269999999999986
No 288
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.77 E-value=2.3e-08 Score=116.16 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=81.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
..++.+||+|||..||||||||-+|+...+... +.+.+....+|.... .....+.|+||+...+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadvt------------Pe~vpt~ivD~ss~~~ 68 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADVT------------PENVPTSIVDTSSDSD 68 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCccC------------cCcCceEEEecccccc
Confidence 346678899999999999999999998776533 333333333332221 1223389999997766
Q ss_pred hhhHHHhhccCCCEEEEEEeCCC-----CCCHhHHHHHHHHH--hcCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMH-----GLEPQTIESLNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~-----gle~qtiEsL~lLk--k~~iP~IVVLNKIDLL 922 (923)
-.......++.+|+|++||.+.+ ++...++.+++.+. ..++|||||+||+|+.
T Consensus 69 ~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 69 DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 66666788999999999998887 23333333333332 1368999999999985
No 289
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.7e-09 Score=108.33 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.++.+|.+|+|||+||.++....|... +...+|..+.+....- ...+-.....-....|+||||.|++.|..++.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~q----FIsTVGIDFreKrvvY-~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQ----FISTVGIDFREKRVVY-NSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccce----eEEEeecccccceEEE-eccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 468899999999999998877655321 2233343333322110 00000000001112389999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCH-hHHHHHHHHHhc---CCc-EEEEEeCCCcC
Q 002428 876 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLKMR---NTE-FIVALNKVRFS 922 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~-qtiEsL~lLkk~---~iP-~IVVLNKIDLL 922 (923)
..++.+-++||++|+++.-+. ....||.+|..+ .-| ||+++||+||.
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 999999999999999873222 223345555433 234 89999999984
No 290
>COG2262 HflX GTPases [General function prediction only]
Probab=98.75 E-value=3.9e-08 Score=110.87 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n- 872 (923)
-|.|.++|-+|+|||||+|.|.+..+... .++.++..|+. +.+... ....++|-||-|+.+-..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~------d~LFATLdptt------R~~~l~---~g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVA------DQLFATLDPTT------RRIELG---DGRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeecc------ccccccccCce------eEEEeC---CCceEEEecCccCcccCCh
Confidence 45699999999999999999997655322 22323333321 111111 124589999999654321
Q ss_pred -------HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc---CCcEEEEEeCCCcC
Q 002428 873 -------LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 873 -------lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~---~iP~IVVLNKIDLL 922 (923)
.+......+|++|+|||++++.....+ .+...|... .+|+|+|+||+|++
T Consensus 257 ~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 257 PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 122445789999999999986433333 233444443 57999999999976
No 291
>PRK13768 GTPase; Provisional
Probab=98.74 E-value=1.3e-08 Score=108.93 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=46.4
Q ss_pred CCEEEEeCCCCcchh---hHHH---hhccC--CCEEEEEEeCCCCCCHhHHHHHHHHH-----hcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFT---NLRS---RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~---nlrs---~~ls~--aDiVILVVDas~gle~qtiEsL~lLk-----k~~iP~IVVLNKIDLL 922 (923)
..++||||||+..+. .++. +++.. ++++|||||+.++..+..+.....+. ..++|+|+|+||+|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 369999999976532 2221 22222 89999999998876666655443332 5689999999999975
No 292
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.8e-08 Score=98.17 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|++||-.++||||+|..|.-.... ..++++|+ .... .+|.+..|++||..|+..+..+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-----~~ipTvGF---nvet-----------VtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGF---NVET-----------VTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-----ccccccce---eEEE-----------EEeeeeEEeeeeccCchhhhHH
Confidence 456899999999999999999643321 01222222 1111 1234445999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCC--CCHhHHHHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~g--le~qtiEsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
|.+|+...-++|||+|...+ +.....++.+.+. .+.+|++|..||.|+.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 99999999999999998764 2222223333332 3368999999999974
No 293
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.71 E-value=4.4e-08 Score=108.37 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=73.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCC--CcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-----
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~gea--gGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs----- 869 (923)
|.+||.|++||||||+.|.......+.+ ..+.+.+|...+. ....|+|-|.||...
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-----------------~~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-----------------GGESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-----------------CCCcEEEecCcccccccccC
Confidence 7899999999999999998755443333 3334444443331 123489999999432
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCCCC---HhHHHH-HHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHGLE---PQTIES-LNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~gle---~qtiEs-L~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+.....+++..|.++|+|||++..-. .+.+.. +..|.. .+.|.|||+||||++
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 33456678889999999999985321 233332 233333 368999999999965
No 294
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.4e-08 Score=103.32 Aligned_cols=113 Identities=21% Similarity=0.213 Sum_probs=74.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..|+|+|.-++||||||-.+-.... -.-+..-|++.+|...-. +.+....+.|||..|+++..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--------------i~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--------------IEVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--------------eeeccceeEEEEcCChHHHH
Confidence 4489999999999999988743211 111111233333221110 11123459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCC--CCHhHH---HHHHHHHhcCCcEEEEEeCCCc
Q 002428 872 NLRSRGSGLCDIAILVVDIMHG--LEPQTI---ESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~g--le~qti---EsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+|..||..||+||||||++++ +....- ..+..-...++|+++.+||.|+
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence 9999999999999999999973 221111 1222223458999999999986
No 295
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.68 E-value=1.1e-08 Score=113.94 Aligned_cols=127 Identities=24% Similarity=0.367 Sum_probs=89.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCC--------------Ccceeecceeeecccccccceeeeccccc----c-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIRERTRELKANAT----L- 854 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~gea--------------gGIT~qIgat~~p~e~i~ekt~~I~~~~~----~- 854 (923)
.++|+++||++.|||||+.+|.......+.. .|.+..+....+-+.. .....+..+.. .
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~d--gk~~rlknPld~aE~~~ 194 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDD--GKVVRLKNPLDEAEKAA 194 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecC--CceEeecCcccHHHHhH
Confidence 4568999999999999999997655443321 1223322222111111 11111111110 0
Q ss_pred ----CCCCEEEEeCCCCcchhhHHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 ----KVPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 ----k~~~L~IIDTPGhEsf~nlrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...-+.|+||-||+.|...+.+++ +..|..+||+-+.+|++..+.++|-++..+.+|+|||++|||+.
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 011288999999999998888776 67899999999999999999999999999999999999999985
No 296
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.2e-08 Score=102.68 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
+.|+++|+.++|||+|+..|+...++. ....|.++.+.. .++...+.|||.|||.......
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~------------------r~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATY------------------RLGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC-eeeeeccceeeE------------------eecCcceEEEeCCCcHHHHHHH
Confidence 359999999999999999998754331 111111111111 1122337999999999887766
Q ss_pred Hhhcc---CCCEEEEEEeCCCCCC--HhHHHH-HHHH-----HhcCCcEEEEEeCCCcC
Q 002428 875 SRGSG---LCDIAILVVDIMHGLE--PQTIES-LNLL-----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls---~aDiVILVVDas~gle--~qtiEs-L~lL-----kk~~iP~IVVLNKIDLL 922 (923)
..++. .+-+||||||.....- ...-++ +..+ ....+|++|++||.|+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 66665 6889999999875211 111112 2222 23368999999999985
No 297
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=9.7e-08 Score=109.88 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=81.9
Q ss_pred cCCCccccccCCCCEE-EEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEE
Q 002428 782 DATPKQAEENLRSPIC-CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (923)
Q Consensus 782 ~~l~~~~~enlRnp~I-~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~ 860 (923)
.++..+.+.+...|.| +|+|++|+||||||..|+..-.. +.|....-|...... ....|+
T Consensus 56 VPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk--------~ti~~i~GPiTvvsg-----------K~RRiT 116 (1077)
T COG5192 56 VPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK--------QTIDEIRGPITVVSG-----------KTRRIT 116 (1077)
T ss_pred cccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHH--------hhhhccCCceEEeec-----------ceeEEE
Confidence 3445566666666655 49999999999999999752110 011000011111111 112389
Q ss_pred EEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 861 IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
|+.||.. .+.+......+|+|||+||.+-|+...++++|+++..++.| ++.|++..||+
T Consensus 117 flEcp~D---l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 117 FLECPSD---LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEeChHH---HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 9999942 34445566789999999999999999999999999999998 67789999985
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.61 E-value=2.4e-07 Score=105.35 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----ccc------------cCCCCc---ceeecceeeecccccccceeeeccccccC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT----NVQ------------EGEAGG---ITQQIGATYFPAENIRERTRELKANATLK 855 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt----nVq------------~geagG---IT~qIgat~~p~e~i~ekt~~I~~~~~~k 855 (923)
+.|+|+|++++|||||||+|.+. ++. .....| +|.. ..|+|... ..|.... -.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTe--PkfvP~kA-----vEI~~~~-~~ 89 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTE--PKFVPNEA-----VEININE-GT 89 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCC--CccccCcc-----eEEeccC-CC
Confidence 56999999999999999999987 332 111122 1111 11222211 1111110 01
Q ss_pred CCCEEEEeCCCCcchhhH-----------------------------HHhhcc-CCCEEEEEE-eCC------CCCCHhH
Q 002428 856 VPGLLVIDTPGHESFTNL-----------------------------RSRGSG-LCDIAILVV-DIM------HGLEPQT 898 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nl-----------------------------rs~~ls-~aDiVILVV-Das------~gle~qt 898 (923)
...+.||||+|+..-..+ +...+. .+++.|||. |.+ .......
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 135999999994321110 223345 899999998 765 3455666
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCc
Q 002428 899 IESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 899 iEsL~lLkk~~iP~IVVLNKIDL 921 (923)
..++..|+..++|||+|+|++|-
T Consensus 170 e~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 170 ERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHhcCCCEEEEEECcCC
Confidence 77889999999999999999993
No 299
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.8e-08 Score=109.34 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc----------ccc-------
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN----------ATL------- 854 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~----------~~~------- 854 (923)
+-..+|+|+|..++|||||+.-|.+..+..+... .+++..-++......++..|... .+|
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~Gr---ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGR---ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCe---eeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 3345799999999999999999887665543211 11222112222111122221110 000
Q ss_pred -----CCCCEEEEeCCCCcchhhHHHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 -----KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 -----k~~~L~IIDTPGhEsf~nlrs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...-++|||..||..|...+..++. ..|+++|||.+..|+.-.+.++|.++...++||+|+++|+|+.
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV 316 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc
Confidence 1122899999999999887776664 3689999999999999999999999999999999999999985
No 300
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.60 E-value=8.8e-08 Score=106.14 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=61.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcce--eecceeeecccccccceeeeccc------cccCCCCEEEEeCCCC-
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKAN------ATLKVPGLLVIDTPGH- 867 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT--~qIgat~~p~e~i~ekt~~I~~~------~~~k~~~L~IIDTPGh- 867 (923)
|+|+|.+++|||||+|+|++..+..+..++.| +.+|..+++..+...+...+..+ .......|.||||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998876655555544 55666665432111111111000 0112245999999996
Q ss_pred ---cchh---hHHHhhccCCCEEEEEEeCC
Q 002428 868 ---ESFT---NLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 868 ---Esf~---nlrs~~ls~aDiVILVVDas 891 (923)
..+. +.....++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 2233 33445689999999999997
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=98.60 E-value=1.1e-07 Score=107.90 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccc-cceeeeccccccCCCCEEEEeCCCCcc-
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGHES- 869 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~-ekt~~I~~~~~~k~~~L~IIDTPGhEs- 869 (923)
.+++.|+|||.+++|||||+|+|.+..+..++.+++|..+....++....+ .....+..........|.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 345679999999999999999999888777777777644333222221111 000011111112234699999999431
Q ss_pred ------hhhHHHhhccCCCEEEEEEeCC
Q 002428 870 ------FTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 870 ------f~nlrs~~ls~aDiVILVVDas 891 (923)
+.+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3344556778999999999984
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.58 E-value=1.6e-07 Score=104.77 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..+|++||+.|+|||||+|.|+++.+.... ++....+....+...+......+... -....|+||||||+.++...
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~--~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET--EIDDIRAEGTSPTLEIKITKAELEED--GFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC--CccCcccccCCcceEEEeeeeeeecC--CeEEEEEEeccCCccccccc
Confidence 456999999999999999999987554321 00000000011111111111111110 11134999999996654321
Q ss_pred ---HH-----------hhc--------------cCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 ---RS-----------RGS--------------GLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 ---rs-----------~~l--------------s~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|. .|+ ..+|+|||+|-++ |++.+..++.+..|.. .+.+|-|+-|.|.+
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~l 175 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTL 175 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccC
Confidence 11 111 2378999999986 6899999998887766 67888899999976
No 303
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.58 E-value=3.5e-07 Score=108.72 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCC-CCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~ge-agGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~- 871 (923)
.++|+|||.+|+|||||+|+|++..+.... ....|..+...+ . ......|.||||||+....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-----------~-----~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-----------G-----LVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE-----------E-----EECCceEEEEECCCCCcccc
Confidence 457999999999999999999987654221 111111110000 0 0112359999999976431
Q ss_pred -----h----HHHhhcc--CCCEEEEEEeCCCCCC-HhHHHHHHHHH---hc--CCcEEEEEeCCCcC
Q 002428 872 -----N----LRSRGSG--LCDIAILVVDIMHGLE-PQTIESLNLLK---MR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 -----n----lrs~~ls--~aDiVILVVDas~gle-~qtiEsL~lLk---k~--~iP~IVVLNKIDLL 922 (923)
. .+..++. .+|+||||+.+..... .....++..+. .. -..+|||+|..|.+
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 1 1222333 5899999988754222 23333444332 22 24689999998865
No 304
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=8.2e-08 Score=98.90 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
...++++|..|+||||++.+.+...|... +...+|....+.... .+.....|.+|||.|++.|..+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~----y~at~Gv~~~pl~f~----------tn~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKT----YPATLGVEVHPLLFD----------TNRGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceec----ccCcceeEEeeeeee----------cccCcEEEEeeecccceeeccc
Confidence 45689999999999999999987666432 223334333332211 1112345999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHHHHH--HHHh-cCCcEEEEEeCCCc
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM-RNTEFIVALNKVRF 921 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiEsL~--lLkk-~~iP~IVVLNKIDL 921 (923)
+.-|+-..-|+|+++|++.++.......|. +++. .++||++++||+|.
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi 126 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI 126 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec
Confidence 999998999999999999876655443332 2322 26899999999995
No 305
>PTZ00099 rab6; Provisional
Probab=98.57 E-value=1.6e-07 Score=95.02 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=51.3
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.|.||||||++.|..++..+++.+|++|||||+++....... .++..+.. ..+|+|||+||+||.
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 489999999999999999999999999999999885433332 23333322 368999999999984
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.57 E-value=1.3e-07 Score=106.45 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=62.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee--ecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~--qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
+.|+|||.+++|||||+|+|++.....++.+++|. .+|..+++...... ...+..+..+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~-l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDK-LAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchh-hHHhcCCccccCceEEEEECCCCCCCCC
Confidence 57999999999999999999998866666666663 44444444321110 1111111112223599999999532
Q ss_pred ----hhhHHHhhccCCCEEEEEEeCC
Q 002428 870 ----FTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 870 ----f~nlrs~~ls~aDiVILVVDas 891 (923)
+.+.....++.||++|+|||+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3344556778999999999985
No 307
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.56 E-value=1.4e-07 Score=107.43 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce--eecceeeecccccccceeeecc------ccccCCCCEEEEeCCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKA------NATLKVPGLLVIDTPG 866 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT--~qIgat~~p~e~i~ekt~~I~~------~~~~k~~~L~IIDTPG 866 (923)
+.|+|||.+++|||||+|+|++..+..++.++.| +++|..+++......+...+.. ...+....|.||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4699999999999999999998877655555554 5566555543211111000100 0112224589999999
Q ss_pred Cc-------chhhHHHhhccCCCEEEEEEeCC
Q 002428 867 HE-------SFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 867 hE-------sf~nlrs~~ls~aDiVILVVDas 891 (923)
.. .+.+.....++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 23334455689999999999997
No 308
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.55 E-value=5.6e-08 Score=107.97 Aligned_cols=136 Identities=21% Similarity=0.332 Sum_probs=92.5
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCC--------------CCcceeecceeeecccc---cccceeeec
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAEN---IRERTRELK 849 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~ge--------------agGIT~qIgat~~p~e~---i~ekt~~I~ 849 (923)
....++-..+|+|+|.+++||||||.-|.+..+..+. ..|-|..+|..++-.+. +.+..-...
T Consensus 126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 3345566788999999999999999888765543321 11233333332222211 111100000
Q ss_pred cccccCC------CCEEEEeCCCCcchhhHHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 850 ANATLKV------PGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 850 ~~~~~k~------~~L~IIDTPGhEsf~nlrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
....|.. .-|+|||..||+.|...+..++ +..|..+|+|-++.++-..+.++|.+....++|++||++|||+
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 0111111 1289999999999988766555 6789999999999999999999999999999999999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 286 C 286 (641)
T KOG0463|consen 286 C 286 (641)
T ss_pred C
Confidence 5
No 309
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2e-07 Score=104.54 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=74.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccc--ccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE--NIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e--~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.+++|+|..|.|||||||.|+.+.+...... .+....+.. .+......+.. .-....|+||||||+.++..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~-----~~~~~~~~~t~~i~~~~~~iee--~g~~l~LtvidtPGfGD~vd 94 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREV-----PGASERIKETVEIESTKVEIEE--NGVKLNLTVIDTPGFGDAVD 94 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCccc-----CCcccCccccceeeeeeeeecC--CCeEEeeEEeccCCCccccc
Confidence 6799999999999999999998755422100 111111111 11111111111 11113489999999654322
Q ss_pred H--------------HHhhc-------------cCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L--------------RSRGS-------------GLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l--------------rs~~l-------------s~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ...|+ ..+|||||+|.++ ||+.+..+..+..+.. .+++|-|+-|.|.+
T Consensus 95 ns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 95 NSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTL 171 (366)
T ss_pred ccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccC
Confidence 1 01111 2579999999986 6899999998887765 67888889999976
No 310
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.3e-07 Score=94.00 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
...++++|--|+|||||++.|-...... ...+..|+... +.+....++.+|..||......
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q---------hvPTlHPTSE~----------l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ---------HVPTLHPTSEE----------LSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccc---------cCCCcCCChHH----------heecCceEEEEccccHHHHHHH
Confidence 3469999999999999999986533211 00111111110 1123345899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCC-HhHHHHHHH----HHhcCCcEEEEEeCCCcCC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNL----LKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle-~qtiEsL~l----Lkk~~iP~IVVLNKIDLL~ 923 (923)
+..|+..||+||++||+.+.-. ......+.. -...++|++|.+||||+.+
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 9999999999999999976211 111222221 2234799999999999853
No 311
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.3e-07 Score=93.83 Aligned_cols=111 Identities=24% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
|..+|+|+|..|+||||++.+|--.++. ...+.+++ ...+ ..+++..+.|||..|+-++..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-----ttkPtigf---nve~-----------v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-----TTKPTIGF---NVET-----------VPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-----ccCCCCCc---Cccc-----------cccccccceeeEccCcccccH
Confidence 6677999999999999998776433321 11122221 1111 223445699999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCC--CCHhHHHHHHHH---HhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~g--le~qtiEsL~lL---kk~~iP~IVVLNKIDLL 922 (923)
+|..|+...+.+|||||.++. +...-.+++.+| ...+..++|++||+|.-
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 999999999999999999873 222223333333 33357799999999974
No 312
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.47 E-value=1.9e-07 Score=101.65 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCccee--ecceeeecccccccceeeeccccccCCCCEEEEeCCCCc------
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~--qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE------ 868 (923)
|+|+|.+++|||||+|+|++.++..++.+++|. ..+..+++........ .+..+..+....|.|+||||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~-~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLA-EIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHH-HHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 589999999999999999998887666666663 3444444332110000 0001111112359999999943
Q ss_pred -chhhHHHhhccCCCEEEEEEeCC
Q 002428 869 -SFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 869 -sf~nlrs~~ls~aDiVILVVDas 891 (923)
.+.+.....++.||++|+|||+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 23344556678899999999874
No 313
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.46 E-value=5.7e-07 Score=97.52 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccC---CCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC-
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~g---eagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh- 867 (923)
-+.|.++++|.+++|||+|||.|++.....- ...|-|+.|.... ....+.++|.||.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~-------------------v~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH-------------------VGKSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee-------------------ccceEEEEecCCcc
Confidence 4557899999999999999999987654311 0122222221100 1234899999991
Q ss_pred ---------cchhhHHHhhcc---CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 ---------Esf~nlrs~~ls---~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..|..+...|+- +--.+++++|+..++.+.+...+..+...++|+.+|+||||..
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 234455555542 2346788999999999999999999999999999999999974
No 314
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.40 E-value=2.6e-07 Score=92.77 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=85.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.++-+..|.++|.+.+|||||+-.+++...... .++..|..+.........+ ...+.|||..|+..
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~~i~~t----------~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTVSIRGT----------DISFSIWDLGGQRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEEEecce----------EEEEEEEecCCcHh
Confidence 466677899999999999999999987655322 3444444433322111100 12389999999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCH-hHHHHHHHHHhcC---CcEEEEEeCCCcCC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKMRN---TEFIVALNKVRFSF 923 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~-qtiEsL~lLkk~~---iP~IVVLNKIDLL~ 923 (923)
|.++.......+-+|||++|++.+... ...+|+++.+..+ +| |+|++|.|+++
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi 138 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFI 138 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhh
Confidence 999998888889999999999986543 3445667777665 45 67899999864
No 315
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.35 E-value=1.2e-06 Score=96.60 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc-chh--
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFT-- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE-sf~-- 871 (923)
.+|++||++++||||||++|.++....+...+.|-.+ +...+.|....|+|+|+||+. ...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~----------------VPG~l~Y~ga~IQild~Pgii~gas~g 127 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP----------------VPGMLEYKGAQIQLLDLPGIIEGASSG 127 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc----------------ccceEeecCceEEEEcCcccccCcccC
Confidence 4599999999999999999998665433333322211 222344566679999999953 222
Q ss_pred ----hHHHhhccCCCEEEEEEeCCCCC
Q 002428 872 ----NLRSRGSGLCDIAILVVDIMHGL 894 (923)
Q Consensus 872 ----nlrs~~ls~aDiVILVVDas~gl 894 (923)
.......+.||+||+|+|+....
T Consensus 128 ~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 128 RGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred CCCcceeeeeeccCCEEEEEEecCCCh
Confidence 23445678999999999998643
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=7.3e-07 Score=100.06 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce--eecceeeecccccccceeeecc-ccccCCCCEEEEeCCC----
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKA-NATLKVPGLLVIDTPG---- 866 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT--~qIgat~~p~e~i~ekt~~I~~-~~~~k~~~L~IIDTPG---- 866 (923)
++.|.|+|.|++|||||+|.|+...+...+++.+| ++.|..++|..... ....+.. ........+.|||.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~-~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLD-ELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHH-HHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 35799999999999999999998887766666665 56666777763222 1111111 1222334599999999
Q ss_pred ---CcchhhHHHhhccCCCEEEEEEeCC
Q 002428 867 ---HESFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 867 ---hEsf~nlrs~~ls~aDiVILVVDas 891 (923)
.+.+.|.....++.+|+||+|||+.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3467888889999999999999987
No 317
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=1.1e-06 Score=87.63 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCcchhhHHH--------hhccCCCEEEEEEeCCCCCCHh--HHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRS--------RGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs--------~~ls~aDiVILVVDas~gle~q--tiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||......+.. .....++.+|+|+|+.+..... ...+..++ ..--+||+||+||
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi---~~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI---AFADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH---HHCCEEEEecccC
Confidence 47799999999653333222 2334578999999987532211 11111222 2234679999997
No 318
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.33 E-value=1e-06 Score=98.53 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-----------CHhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-----------EPQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-----------e~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..+.+||++|+..+...|..++..+++||||||++..- ....+..+..+.. .++|+||++||+|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 34789999999999999999999999999999998621 1222333333332 36899999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 5
No 319
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.8e-06 Score=92.12 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n- 872 (923)
..+|.|+|.+|.|||||+|.|+...+....... ..+..+..+..+...+..| ...-....|++|||||+.++.+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~---~~~~p~pkT~eik~~thvi--eE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSD---NSAEPIPKTTEIKSITHVI--EEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCC---cccCcccceEEEEeeeeee--eecceEEEEEEecCCCcccccCc
Confidence 356999999999999999999877665321110 0000000000111000001 0011113499999999654432
Q ss_pred --HHH-----------hhc--------------cCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 --LRS-----------RGS--------------GLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 --lrs-----------~~l--------------s~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+|. .|+ ..+|||||+|-++ |.+.+.++++|..|.. -+.+|-|+-|.|-+
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTL 197 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccc
Confidence 111 121 2368999999987 6788999998877655 35677788888865
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.27 E-value=1.3e-06 Score=95.77 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=39.4
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.++||||||.... ....+..+|++++|.....+ ..+..+.. ....+|.|||+||+|++
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhccEEEEEccccc
Confidence 3577999999996422 22356778998888665432 22222211 12368899999999985
No 321
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=3.7e-07 Score=99.63 Aligned_cols=140 Identities=20% Similarity=0.281 Sum_probs=90.5
Q ss_pred CCCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCc---cccCCCCcceeeccee----eecc-------cccccceeee
Q 002428 783 ATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGAT----YFPA-------ENIRERTREL 848 (923)
Q Consensus 783 ~l~~~~~enlRnp~I~VLG~~GSGKSTLLN~Llgtn---Vq~geagGIT~qIgat----~~p~-------e~i~ekt~~I 848 (923)
++.+....+..+++|.-|||+..||||++..|.+.. |...-...||..+|.. |-.. .+.+.....-
T Consensus 27 pls~evisRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k 106 (466)
T KOG0466|consen 27 PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSK 106 (466)
T ss_pred CCCHHHhhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCC
Confidence 444444556667889999999999999999987532 1111122344444331 1110 0111000000
Q ss_pred ccccccCC----------CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC-CCCHhHHHHHHHHHhcCC-cEEEEE
Q 002428 849 KANATLKV----------PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT-EFIVAL 916 (923)
Q Consensus 849 ~~~~~~k~----------~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~-gle~qtiEsL~lLkk~~i-P~IVVL 916 (923)
.....+.. ..+.|+|+|||.-++..+..+....|+++|+|-.+. +..+|+-++|..+..+.. .+||+-
T Consensus 107 ~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQ 186 (466)
T KOG0466|consen 107 EDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQ 186 (466)
T ss_pred CCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEe
Confidence 00011111 127899999999999988899999999999998886 457899999887766654 688999
Q ss_pred eCCCcC
Q 002428 917 NKVRFS 922 (923)
Q Consensus 917 NKIDLL 922 (923)
||+||+
T Consensus 187 NKiDli 192 (466)
T KOG0466|consen 187 NKIDLI 192 (466)
T ss_pred chhhhh
Confidence 999986
No 322
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.25 E-value=1.6e-06 Score=96.80 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++||||+|...-... ....+|++|||+++..+...+.... ....+..|||+||+|++
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhccc
Confidence 467999999997532222 4678999999987554332222211 12234458999999975
No 323
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.25 E-value=2.4e-06 Score=94.45 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=50.1
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-----------CHhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-----------EPQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-----------e~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..+.+||++|+......|..++..+++||||||++... ....+..+..+.. .++|+||++||+|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 44889999999999999999999999999999998621 1122222332222 36899999999997
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 241 f 241 (317)
T cd00066 241 F 241 (317)
T ss_pred H
Confidence 5
No 324
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.22 E-value=9.6e-07 Score=91.25 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++||+|.|.... ...+....+..|+|+|+.++.... +........|.|||+||+|++
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLA 161 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHcc
Confidence 457999999993211 112223456778899988653322 122233457899999999985
No 325
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=95.45 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=77.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.+...|.|.|+|.+|+||||||+.|...++.. ..++.++..|+...-. + .....+++.||-|+.+
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p------~drLFATLDpT~h~a~----L-----psg~~vlltDTvGFis 238 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYP------NDRLFATLDPTLHSAH----L-----PSGNFVLLTDTVGFIS 238 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCc------cchhheeccchhhhcc----C-----CCCcEEEEeechhhhh
Confidence 34557889999999999999999999766642 2333333333321110 0 0123489999999654
Q ss_pred hhhH--------HHhhccCCCEEEEEEeCCCCCCH-hHHHHHHHHHhcCCc-------EEEEEeCCCc
Q 002428 870 FTNL--------RSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKMRNTE-------FIVALNKVRF 921 (923)
Q Consensus 870 f~nl--------rs~~ls~aDiVILVVDas~gle~-qtiEsL~lLkk~~iP-------~IVVLNKIDL 921 (923)
-..+ +...+-.+|++|+|+|++|+... |....+..|+..++| ||=|-||+|.
T Consensus 239 dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 3221 22345679999999999997654 444456777777775 6778899886
No 326
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.19 E-value=1.3e-06 Score=85.27 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC----cchh
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 871 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh----Esf~ 871 (923)
+|++||.+|+|||||++.|.+..+... -|+-+ .| ..-..|||||- ..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv--e~---------------------~d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV--EF---------------------NDKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc----cccee--ec---------------------cCccccCCchhhhhhhHHH
Confidence 589999999999999999987543211 11110 01 11235999993 3333
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
......+..+|+++||..++++.+.... .++.....|+|-|++|+||.
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEeccccc
Confidence 3344556778999999998875332222 22333456799999999985
No 327
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=7.7e-07 Score=100.19 Aligned_cols=129 Identities=26% Similarity=0.285 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc------------CCCCcceeecceeeeccccccc--ceeeec-cccccCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE------------GEAGGITQQIGATYFPAENIRE--RTRELK-ANATLKVP 857 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~------------geagGIT~qIgat~~p~e~i~e--kt~~I~-~~~~~k~~ 857 (923)
+..+++|+||++.||||+-..|+...-+. .+.+.-+..+..........+. ++..+. .+......
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 34569999999999999988776421100 0000011111111111111111 111111 01111223
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-----C--CHhHHHHHHHHHhcCC-cEEEEEeCCCc
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFIVALNKVRF 921 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-----l--e~qtiEsL~lLkk~~i-P~IVVLNKIDL 921 (923)
.++|+|+|||.+|...+..+.+++|+.+|||.+..+ + ..|+.++..+++..++ .+||++||||-
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccC
Confidence 499999999999999999999999999999998642 2 3588999888887776 68999999984
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.14 E-value=4.8e-06 Score=95.84 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCcchhh----HHHh--hccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTN----LRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~n----lrs~--~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||...... .... ....++.++||+|++.+-. ....+..+...--+.-||+||+|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHhccCCcEEEEECccC
Confidence 46799999999654322 1112 2345788999999986532 233444444433467788999995
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.10 E-value=5.1e-06 Score=81.86 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
.++|+|+|.+|+|||||||+|++...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 45688999999999999999998554
No 330
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.09 E-value=1.8e-05 Score=83.46 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=49.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--ccccCCC-CcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt--nVq~gea-gGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..|+|+|++++|||||||+|++. .+..+.. ..+|..|-....+... .....++||||||..+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCccc
Confidence 45899999999999999999987 4443211 1122211111111100 112459999999965432
Q ss_pred h------HHHhhcc--CCCEEEEEEeCCC
Q 002428 872 N------LRSRGSG--LCDIAILVVDIMH 892 (923)
Q Consensus 872 n------lrs~~ls--~aDiVILVVDas~ 892 (923)
. .+...+. .++++||.++.+.
T Consensus 75 ~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 75 RGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 1 1222333 4899998888754
No 331
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=6.7e-06 Score=93.26 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+..+|+|+|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.05 E-value=7.3e-06 Score=83.41 Aligned_cols=55 Identities=20% Similarity=0.443 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
.++|+|+|.+|+|||||||+|++... ..+..+|+|..+...++ ...+.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-------------------~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-------------------DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-------------------CCCEEEEECcCC
Confidence 46799999999999999999998654 34444555543221111 124899999994
No 333
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.04 E-value=3.9e-06 Score=85.01 Aligned_cols=127 Identities=23% Similarity=0.245 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee---------------ecccccc-----cceeeecccccc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY---------------FPAENIR-----ERTRELKANATL 854 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~---------------~p~e~i~-----ekt~~I~~~~~~ 854 (923)
|.++|.|..|+||||||++|+..........-+...+|... +...++. .....+......
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 67899999999999999999941111111111222222110 0000000 000000011111
Q ss_pred C--CCCEEEEeCCCCcchhhHH--H---hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 K--VPGLLVIDTPGHESFTNLR--S---RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k--~~~L~IIDTPGhEsf~nlr--s---~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. .+.++||.|.|......+. . ...-..+.+|+|+|+.+......... .+......-=+||+||+|++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPE-LLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchh-hhhhcchhcCEEEEeccccC
Confidence 2 4679999999965544441 1 11234678999999976211111111 11222234458899999984
No 334
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.02 E-value=1e-05 Score=91.56 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=64.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcce--eecceeeecccccccceeeeccccccCCCCEEEEeCCCCc---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 868 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT--~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE--- 868 (923)
..|+|+|.+++|||||+|.|.+... ...+.+.+| +.+|...++...... ...+..+.......+.|+|+||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~-L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDL-LAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHH-HHHHhCCcCcCCceEEEEeccccccch
Confidence 4689999999999999999998877 555555443 445555544432111 111111111122358999999943
Q ss_pred ----chhhHHHhhccCCCEEEEEEeCC
Q 002428 869 ----SFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 869 ----sf~nlrs~~ls~aDiVILVVDas 891 (923)
.+.+.....++.||++|+||++.
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 35667778899999999999985
No 335
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.96 E-value=4.7e-07 Score=93.21 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHHh
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~ 876 (923)
++|+|..++|||+++.+++..++... +-..||..+-.. +..........+.|||..|++.|.++..-
T Consensus 28 ~lVig~~~vgkts~i~ryv~~nfs~~----yRAtIgvdfalk---------Vl~wdd~t~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 28 VLVIGDLGVGKTSSIKRYVHQNFSYH----YRATIGVDFALK---------VLQWDDKTIVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hheeeeccccchhHHHHHHHHHHHHH----HHHHHhHHHHHH---------HhccChHHHHHHHHhcchhhhhhcceEEE
Confidence 89999999999999999987665421 111122111000 00001111234889999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHhHHH-HHHHH-------HhcCCcEEEEEeCCCc
Q 002428 877 GSGLCDIAILVVDIMHGLEPQTIE-SLNLL-------KMRNTEFIVALNKVRF 921 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qtiE-sL~lL-------kk~~iP~IVVLNKIDL 921 (923)
|+..++++++|||+++.+...... +.+-+ ....+|+|+..||||+
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence 999999999999999866543332 22222 1224678999999996
No 336
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.95 E-value=3.1e-05 Score=86.42 Aligned_cols=128 Identities=23% Similarity=0.157 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc------ccCCCCcceeec-ceeeecccccccceeeeccc-------------c-c
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV------QEGEAGGITQQI-GATYFPAENIRERTRELKAN-------------A-T 853 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV------q~geagGIT~qI-gat~~p~e~i~ekt~~I~~~-------------~-~ 853 (923)
|..+|.|.-|+||||||++|+...- ..++.+-+...- .........+.+.+.++-++ . .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 5678999999999999999986442 222232222220 10000000011111111111 0 1
Q ss_pred cCCCCEEEEeCCCCcchhhHHHhh--------ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 854 LKVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlrs~~--------ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...+..+||.|.|...-...+... .-..|.+|.|||+.+.........-.+..+...-=+||+||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecccCC
Confidence 234779999999965543332222 123578999999988443322101111122234558999999986
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.94 E-value=1.7e-05 Score=78.19 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
+.++|+|+|.+++|||||+|+|++... ..+..+++|.......+ ...+.||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-------------------DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-------------------cCCEEEEECCCC
Confidence 456799999999999999999997653 22223333333211110 134899999994
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=97.93 E-value=1.6e-05 Score=89.11 Aligned_cols=63 Identities=22% Similarity=0.156 Sum_probs=37.6
Q ss_pred CCEEEEeCCCCcchhh----HHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTN----LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~n----lrs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
+.++||||+|...... ..... ...+|.+|||+|++.+ ...+..+..+...--.--||+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 4699999999654322 11111 2357899999999764 23333333333222234677899986
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.92 E-value=6.4e-06 Score=92.71 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc------cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq------~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
..|+|+|.+|+|||||||+|++.... .+..+|+|..+. .+ .+ ..++.||||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--------------~~----~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--------------EI----PL-DDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--------------EE----Ee-CCCCEEEECCCCC
Confidence 46999999999999999999975321 111222221110 00 00 1347899999965
Q ss_pred chhhHHH---h----h---ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 869 SFTNLRS---R----G---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 869 sf~nlrs---~----~---ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
....+.. . + ......++|+++..+.+....+..+..+...+..|++++++.+
T Consensus 216 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~ 277 (360)
T TIGR03597 216 NSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNEL 277 (360)
T ss_pred ChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCc
Confidence 3322111 0 1 1335667777777664333333333333333445555555543
No 340
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.92 E-value=2.3e-05 Score=85.32 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCCcchhhHHH-------hh-----ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs-------~~-----ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||......... .. ...+|.+|||+|++.+ ...+..+..+...--+.-||+||+|.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 46799999999754322211 11 1248999999999753 44444333333222246788999996
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.92 E-value=1.7e-05 Score=77.05 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+|+|+|.+|+|||||+|+|++..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999997654
No 342
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.92 E-value=7.2e-06 Score=83.18 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.+++.+++|+|++|||||||||.|+...
T Consensus 32 ~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 32 LLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4556779999999999999999999864
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=4.6e-05 Score=76.09 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCcchhh----HHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHH-HHhcCCcEEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTN----LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~n----lrs~~--ls~aDiVILVVDas~gle~qtiEsL~l-Lkk~~iP~IVVLNKIDLL 922 (923)
.+.++||||||...+.. ..... +..++.+|||+++... ......+.. +...+ ...||+||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 35699999999753321 11111 2348999999998643 233333333 33344 366788999974
No 344
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.87 E-value=1.7e-05 Score=84.42 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
..|+++|.+|+|||+|-..++...++ .....|-|..+.... .+. +++.-|.+||+.|++.|+..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh---------~Rf------lGnl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSH---------VRF------LGNLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehh---------hhh------hhhheeehhccCCcHHHHHH
Confidence 35999999999999998877754332 111112221111100 000 11123899999999877543
Q ss_pred -----HHhhccCCCEEEEEEeCCCCCCHhHHHHH----HHHHhc--CCcEEEEEeCCCcC
Q 002428 874 -----RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 874 -----rs~~ls~aDiVILVVDas~gle~qtiEsL----~lLkk~--~iP~IVVLNKIDLL 922 (923)
....++..+++|+|+|+...-..-++.++ ..+... ...+++.++|+||+
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 33578899999999999875333333332 233332 34589999999986
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.87 E-value=3.4e-05 Score=85.83 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhhH----HH---hh-----ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNL----RS---RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nl----rs---~~-----ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||...+... .. +. ...++.++||+|++.+. ..+.....+...--+.-||+||+|.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKlD~ 271 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKLDG 271 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECCCC
Confidence 467999999996543211 11 11 23578899999998643 2222222222222345788999995
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.86 E-value=2.1e-05 Score=79.73 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
..+|+|+|.+|+|||||||+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999997554
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.4e-05 Score=90.11 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecce--------eeecccccccc----eee------------
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA--------TYFPAENIRER----TRE------------ 847 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIga--------t~~p~e~i~ek----t~~------------ 847 (923)
-++.+|+|.|.+++||||+||+++...+..+..+.+|..+.. .+.-....... +..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 345679999999999999999999887765544444432211 00000000000 000
Q ss_pred -------eccc---cccCCCCEEEEeCCCCcc---hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEE
Q 002428 848 -------LKAN---ATLKVPGLLVIDTPGHES---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 914 (923)
Q Consensus 848 -------I~~~---~~~k~~~L~IIDTPGhEs---f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IV 914 (923)
|..+ ..+-...+.+||.||... +...+....-.+|++|||+.+.+-++.....++......+-.|+|
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 0000 011112489999999653 334444566678999999999886666666677666665444666
Q ss_pred EEeCCCc
Q 002428 915 ALNKVRF 921 (923)
Q Consensus 915 VLNKIDL 921 (923)
+.||.|.
T Consensus 267 lnnkwDa 273 (749)
T KOG0448|consen 267 LNNKWDA 273 (749)
T ss_pred Eechhhh
Confidence 6777775
No 348
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.85 E-value=0.00015 Score=72.62 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
..+.++|||||+... ......+..+|.+|+|+.+..........++.++...++|+.||+|++|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 457799999997643 23445678899999999988654455566677777778999999999985
No 349
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.84 E-value=3.8e-05 Score=86.43 Aligned_cols=69 Identities=23% Similarity=0.143 Sum_probs=51.5
Q ss_pred cCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC--------CHhHHHHHHHH---Hhc----CCcEEEEEeC
Q 002428 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLL---KMR----NTEFIVALNK 918 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl--------e~qtiEsL~lL---kk~----~iP~IVVLNK 918 (923)
+....+.++|++||-+-..-|...+..+++||||+.++..- .....+++.++ .+. +++|||+|||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 44456899999999888888889999999999999998521 12222333333 222 6899999999
Q ss_pred CCcC
Q 002428 919 VRFS 922 (923)
Q Consensus 919 IDLL 922 (923)
+||+
T Consensus 272 ~DLF 275 (354)
T KOG0082|consen 272 KDLF 275 (354)
T ss_pred HHHH
Confidence 9986
No 350
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.83 E-value=5e-05 Score=75.43 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
.+.++||||||... .....+..+|.+|+|+.+.- ...+.++.. .....--+||+||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 46799999999642 22348889999999998762 222322221 222334578999998
No 351
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.83 E-value=2.6e-05 Score=86.78 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccc-eeeeccccccCCCCEEEEeCCCC----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRER-TRELKANATLKVPGLLVIDTPGH---- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ek-t~~I~~~~~~k~~~L~IIDTPGh---- 867 (923)
.+..|.|+|.+++|||||+|.|...+...++.+.+|.......++....+.. ...+..+-......|.|+|+.|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 3567999999999999999999999888888888777665543333322210 00000000111134999999992
Q ss_pred ---cchhhHHHhhccCCCEEEEEEeCC
Q 002428 868 ---ESFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 868 ---Esf~nlrs~~ls~aDiVILVVDas 891 (923)
..+.|.....++.||+++.||++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 356777788899999999999876
No 352
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.83 E-value=4.9e-05 Score=78.98 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++||.|.|..-.... . ...++.+|+|||+.++...... ......+.-++|+||+|+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~-~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF-S--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCCccccc-c--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhcc
Confidence 356899999994211111 1 2336889999999875442211 1112223348999999985
No 353
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.82 E-value=3.5e-05 Score=98.53 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc----c
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE----S 869 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE----s 869 (923)
-|-.+|||++|+||||||.+. +..++... .++...... + ..++.| .-+.....+||||+|.. +
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~------~~~~~~~~~--~-~~t~~c---~wwf~~~avliDtaG~y~~~~~ 177 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAE------RLGAAALRG--V-GGTRNC---DWWFTDEAVLIDTAGRYTTQDS 177 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCch------hhccccccC--C-CCCccc---ceEecCCEEEEcCCCccccCCC
Confidence 455899999999999999976 43443211 110000000 0 000000 00112458899999932 1
Q ss_pred ----hhhHHH---------hhccCCCEEEEEEeCCCCCC--HhHH-HH-------HH---HHHhcCCcEEEEEeCCCcC
Q 002428 870 ----FTNLRS---------RGSGLCDIAILVVDIMHGLE--PQTI-ES-------LN---LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ----f~nlrs---------~~ls~aDiVILVVDas~gle--~qti-Es-------L~---lLkk~~iP~IVVLNKIDLL 922 (923)
....|. +-.+-.|+||++|++..-+. ...+ .+ |. ......+||+||+||||++
T Consensus 178 ~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 178 DPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 111122 22345899999999886332 1111 11 11 1223478999999999997
No 354
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.81 E-value=3.3e-05 Score=84.26 Aligned_cols=57 Identities=28% Similarity=0.466 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
+.++|+|+|.+|+|||||||+|++..+ ..+..+|+|..+.. +. ....+.||||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~-----------------~~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IK-----------------LGKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EE-----------------eCCcEEEEECCCcC
Confidence 346799999999999999999998765 34445555544321 11 01348999999963
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.81 E-value=4.3e-05 Score=82.84 Aligned_cols=56 Identities=32% Similarity=0.507 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
+.++|+|+|.+|+|||||||+|++..+. .+..+|+|..+.. +. + ...+.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~----------~-------~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IK----------L-------SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EE----------e-------CCCEEEEECCCc
Confidence 3567999999999999999999976643 3334444332211 10 0 124899999996
No 356
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=2.9e-05 Score=84.43 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs- 869 (923)
+-.+.+|+.||.+|.||||||+.|+.+++....+.-..+.+......+..... .. ...|+|+||.|+.+
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs-------nv---rlKLtiv~tvGfGDQ 108 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES-------NV---RLKLTIVDTVGFGDQ 108 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc-------Ce---eEEEEEEeecccccc
Confidence 44566799999999999999999999888644333222222221111111000 01 12489999999432
Q ss_pred ------hhh-------HHH----------h-----hccCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 870 ------FTN-------LRS----------R-----GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 870 ------f~n-------lrs----------~-----~ls~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
|.. +.. + .-+.+++|||+|.++ |++-...+-.+..|.. .+.||-|+-|.|
T Consensus 109 inK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaD 187 (406)
T KOG3859|consen 109 INKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKAD 187 (406)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhh
Confidence 111 000 1 114578999999887 4554444444433332 455666666666
Q ss_pred cC
Q 002428 921 FS 922 (923)
Q Consensus 921 LL 922 (923)
.+
T Consensus 188 ti 189 (406)
T KOG3859|consen 188 TI 189 (406)
T ss_pred hh
Confidence 43
No 357
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.81 E-value=1.2e-05 Score=91.00 Aligned_cols=67 Identities=25% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC--------CCHhHHHHHH---HHHh----cCCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------LEPQTIESLN---LLKM----RNTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g--------le~qtiEsL~---lLkk----~~iP~IVVLNKID 920 (923)
...+.|||+.|+..-..-|..++..+++||||++++.. ......+.|. .+.. .++||||++||+|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 34579999999988888889999999999999998742 1122223333 3322 2689999999999
Q ss_pred cC
Q 002428 921 FS 922 (923)
Q Consensus 921 LL 922 (923)
++
T Consensus 315 ~f 316 (389)
T PF00503_consen 315 LF 316 (389)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 358
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.80 E-value=5.5e-05 Score=84.17 Aligned_cols=128 Identities=18% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccc----------ccccceeeecc----------cc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE----------NIRERTRELKA----------NA 852 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e----------~i~ekt~~I~~----------~~ 852 (923)
+-|..+|.|..|+|||||||+|+...- .....-|...+|...+... ....-+.++.. ..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~-~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQH-GYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccc-CCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 357889999999999999999985321 1111112222221111000 00000000100 00
Q ss_pred -cc----CCCCEEEEeCCCCcchhhHHHhhc--------cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCC
Q 002428 853 -TL----KVPGLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (923)
Q Consensus 853 -~~----k~~~L~IIDTPGhEsf~nlrs~~l--------s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKI 919 (923)
.+ ..+..+||.|.|......+....+ -..+.+|.|||+.+......... ....+...-=+||+||+
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~IvlnK~ 160 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKT 160 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCEEEEecc
Confidence 00 136789999999765544433221 13578999999986332111100 11122233458899999
Q ss_pred CcC
Q 002428 920 RFS 922 (923)
Q Consensus 920 DLL 922 (923)
|++
T Consensus 161 Dl~ 163 (318)
T PRK11537 161 DVA 163 (318)
T ss_pred ccC
Confidence 985
No 359
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.79 E-value=5.7e-05 Score=69.50 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|+++|..|+|||+|+.+|....+... +.+ +.++ |..+..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 589999999999999999965443210 000 1111 222334
Q ss_pred hhccCCCEEEEEEeCCCCCCHh--HHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~q--tiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+++.++++++|++........ +...+.......+|+++++||+|+
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl 89 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVL 89 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhh
Confidence 4566778888888776532222 111222222335788889999986
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=5.3e-05 Score=87.71 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCcchhhH------HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nl------rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
..++||||||...+... ....+..+|.+|||+|++.+ ...+..+..+.. .++ .-||+||+|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccC
Confidence 36999999996554321 11234568999999999875 333333333322 233 3678899985
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=4.7e-05 Score=89.66 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCCCEEEEeCCCCcchhhHHH------hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs------~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
..+.++||||||...+..... .... ....+|||+++.... ....++..+... .+..||+||+|.
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~-Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFS-DLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChh-HHHHHHHHHHhh-CCeEEEEecCcC
Confidence 346799999999654322111 1112 235678888765322 223344444432 467799999996
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=8.6e-05 Score=85.00 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=36.3
Q ss_pred CCEEEEeCCCCcchhh----HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTN----LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~n----lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
..++||||||...... .....+ ...+.++||++++.+. .....++..+...++ --||++|+|-
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccC
Confidence 5799999999644221 122222 3467889999986421 233444555544332 3456788885
No 363
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.73 E-value=0.00011 Score=82.34 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.|+++|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4577899999999999999999863
No 364
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.71 E-value=4.9e-05 Score=81.28 Aligned_cols=62 Identities=26% Similarity=0.227 Sum_probs=44.7
Q ss_pred CCEEEEeC-CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CcEEEEEeCCCc
Q 002428 857 PGLLVIDT-PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDT-PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~-iP~IVVLNKIDL 921 (923)
+.++|+|| .|.++|.. .....||++|+|+|++..-......+-.+....+ .+|.||+||+|-
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 45888888 57776664 3457899999999998643334444445556667 699999999983
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.70 E-value=3.5e-05 Score=80.05 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCEEEEeCCCCcchhhH----HHh--hccCCCEEEEEEeCCCCCCHhHHH-HHHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNL----RSR--GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nl----rs~--~ls~aDiVILVVDas~gle~qtiE-sL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++||||||...+... +.. .....+-++||++++.+. ..+. ++.+....++. -|+++|+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCC
Confidence 56999999996544321 111 122577899999998642 3332 33333333443 4568999963
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.70 E-value=7.2e-05 Score=75.01 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
.++|+|+|.+++|||||+|+|++.++
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35799999999999999999998665
No 367
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.68 E-value=0.00011 Score=86.32 Aligned_cols=110 Identities=16% Similarity=0.282 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
.|+|+|+.++|||.||++|++..+..+..+...+.+....+. .. -...-+++-|.+-. ....+..
T Consensus 427 ~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~------------~~--g~~k~LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 427 QCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVE------------VK--GQQKYLILREIGED-DQDFLTS 491 (625)
T ss_pred eEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeee------------ec--cccceEEEeecCcc-ccccccC
Confidence 499999999999999999999776542212211111110000 00 00111555555543 2222322
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHHHH--HHHhcCCcEEEEEeCCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEsL~--lLkk~~iP~IVVLNKIDL 921 (923)
.. ..||++++|||++.+........+. ......+|+++|+.|+||
T Consensus 492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADL 538 (625)
T ss_pred cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeecccc
Confidence 22 7799999999998644433332221 112257999999999997
No 368
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.67 E-value=4.7e-05 Score=82.53 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEs-L~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||.|-|.-..- ......||++|||+-+..|-..|.+.. +. .++-|||+||+|+
T Consensus 121 G~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGim-----EiaDi~vVNKaD~ 179 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIM-----EIADIFVVNKADR 179 (266)
T ss_dssp T-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHH-----HH-SEEEEE--SH
T ss_pred CCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhh-----hhccEEEEeCCCh
Confidence 3569999999853222 234678999999999887655554431 11 1345899999996
No 369
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.67 E-value=2.7e-05 Score=82.13 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcch------hhHHHhhccC---CCEEEEEEeCCCCCCH------hHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESF------TNLRSRGSGL---CDIAILVVDIMHGLEP------QTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf------~nlrs~~ls~---aDiVILVVDas~gle~------qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++|+|+||+..+ .....+++.+ -=|++|++|..- +.. -.+..+..+....+|.|-|++|+||+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 3899999996543 2222333322 226778887642 211 12223445556689999999999986
No 370
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.66 E-value=6e-05 Score=83.93 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
.+..+++|||.++||||||||+|++... ..+..+|+|..+.. ++. ..++.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~--i~~-----------------~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW--IKL-----------------DDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE--EEc-----------------CCCeEEecCCCc
Confidence 4456799999999999999999998775 34455555544321 110 134899999994
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=97.59 E-value=7e-05 Score=84.33 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
.+++|+|.+|+|||||||+|++...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3589999999999999999997543
No 372
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.56 E-value=0.00053 Score=67.69 Aligned_cols=62 Identities=21% Similarity=0.108 Sum_probs=44.2
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.++|||||+.... .....+..+|.+|+|+++..........++..+...+.+ +.||+|+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 6999999986443 344567899999999998765444555556666655554 6789999864
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=97.53 E-value=0.00022 Score=82.64 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCcchhhH-H---H--hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-cEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNL-R---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nl-r---s--~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P~IVVLNKIDL 921 (923)
.+.++||||||...+... . . ..+..++.+|||+|++.+ ......+..+.. .+ ..-||+||+|.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 356999999995433211 1 1 122357788999998653 333444444432 23 24577899984
No 374
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00029 Score=81.33 Aligned_cols=64 Identities=11% Similarity=-0.072 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCCcchh----hHHHhhcc---CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFT----NLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~----nlrs~~ls---~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||+..+. ......+. ...-++||++++.+. .....++..+...++ --||+||+|-
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEecccc
Confidence 4679999999965442 12222222 345678888886531 222333444443332 3577899985
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00012 Score=82.78 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
...+++|+|++|+|||||||+|++..
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 33458999999999999999999654
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.00021 Score=82.60 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCcchhhHHH------hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh-cCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs------~~ls~aDiVILVVDas~gle~qtiEsL~lLkk-~~iP~IVVLNKIDL 921 (923)
.+.++||||||...+..... .....++.+|||+|++.+ .....+...+.. .++ .-||+||+|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 35699999999543322111 123457889999998753 344444444432 232 4566899984
No 377
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00018 Score=79.32 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
+.++||.|-|.-... ......||++|||+=+..|-..|.+.. -.+.+--|||+||.|+
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~ 201 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADR 201 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccCh
Confidence 558999999853222 234467999999987766655554432 1223556899999996
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.50 E-value=0.0001 Score=81.36 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..+...+.+|+|++|+|||||||+|+..
T Consensus 160 ~~l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 160 ELLAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred HHhcCCeEEEECCCCCcHHHHHHhhCch
Confidence 3466667899999999999999999863
No 379
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.48 E-value=0.00024 Score=69.72 Aligned_cols=26 Identities=15% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
...+|+++|.+++|||||+|+|++..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998644
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.47 E-value=0.00016 Score=77.54 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+...+++|+|++|+|||||||+|++...
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 3345799999999999999999997543
No 381
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00027 Score=80.74 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|+.|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999998864
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.46 E-value=0.00046 Score=69.30 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEeCCCCcchhhH-HHhhccCCCEEEEEEe---CCCCCCHhHHHHHHHHHhcCCcEEEEEeCC
Q 002428 861 VIDTPGHESFTNL-RSRGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (923)
Q Consensus 861 IIDTPGhEsf~nl-rs~~ls~aDiVILVVD---as~gle~qtiEsL~lLkk~~iP~IVVLNKI 919 (923)
++++.|.+.+... ....+..+++ +|+| .+..+.......+..+...+.|+|+++|+.
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 3344444433333 2334556777 6888 555556666777777777789999999984
No 383
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.45 E-value=0.00018 Score=77.62 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=54.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~--- 871 (923)
.+|++||.|.+||||||..|..+.......-..| .+ +|...+.|....|+++|.||+..-.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT----Lt------------cIpGvi~y~ga~IQllDLPGIieGAsqg 126 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT----LT------------CIPGVIHYNGANIQLLDLPGIIEGASQG 126 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeE----EE------------eecceEEecCceEEEecCcccccccccC
Confidence 4699999999999999999987654321111111 01 1222344555669999999964322
Q ss_pred ----hHHHhhccCCCEEEEEEeCCC
Q 002428 872 ----NLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 872 ----nlrs~~ls~aDiVILVVDas~ 892 (923)
.+.....+.+|+||+|+|++.
T Consensus 127 kGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 127 KGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred CCCCceEEEEeecccEEEEEecCCc
Confidence 223344577999999999986
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.43 E-value=0.00059 Score=79.56 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCcch-------------hhHHHhhccCCCEEEEEEeCCC-CCCHhH-HHHHHHHHhcCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESF-------------TNLRSRGSGLCDIAILVVDIMH-GLEPQT-IESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf-------------~nlrs~~ls~aDiVILVVDas~-gle~qt-iEsL~lLkk~~iP~IVVLNKIDL 921 (923)
+.++|+|.||..+. ..+...|+++.++|||||--.. ...... -.++..+...+...|+||+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDL 491 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecch
Confidence 45899999995432 3455578899999999984322 112222 22334455557789999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
.
T Consensus 492 A 492 (980)
T KOG0447|consen 492 A 492 (980)
T ss_pred h
Confidence 4
No 385
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.42 E-value=0.00048 Score=67.23 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=43.7
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKIDL 921 (923)
+.++|||||+.. .......+..||.+|+|+++.......+...+..+... ..++.+|+|++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 569999999863 33345678999999999998753333334445444332 4578899999863
No 386
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00048 Score=79.51 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
...+|+|||++|+||||||..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.00042 Score=75.77 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCcchhh----HHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTN----LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~n----lrs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||...+.. .+... ....+.++||++++.. ......++..+...++ --|+++|+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f~~~~~-~~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNFKDIHI-DGIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHhCCCCC-CEEEEEeecC
Confidence 35799999999653321 11122 2346678999998642 1233344444443322 3456788875
No 388
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00049 Score=78.72 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+++|++|+||||++..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988863
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.00037 Score=80.41 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|+||||++..|..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999864
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.35 E-value=0.00046 Score=80.95 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..+|+|||++|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 346999999999999999999753
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.35 E-value=0.00096 Score=58.20 Aligned_cols=93 Identities=19% Similarity=0.124 Sum_probs=55.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH-HH
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-RS 875 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl-rs 875 (923)
|+|.|..|+||||++..|...-.. .+..... +. .++|+|+|+....... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------~g~~v~~----------~~--------d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------RGKRVLL----------ID--------DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEE----------EC--------CEEEEeCCCCccchhhhhh
Confidence 788999999999999988752110 0100000 00 4899999986443322 24
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHH----HHHHHhcCCcEEEEEe
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIES----LNLLKMRNTEFIVALN 917 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEs----L~lLkk~~iP~IVVLN 917 (923)
..+..+|.+|++++............ +........++.+++|
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 56678999999998876333332222 1222233456777766
No 392
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.35 E-value=0.0003 Score=77.59 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|.|+|.+|+||||||++|++
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998875
No 393
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.31 E-value=0.00032 Score=68.79 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..++.+.+..+|++|+|+|+.++...+...++.++...+.|+|+|+||+|++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 45566777888999999999987665555556555666689999999999974
No 394
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00031 Score=89.09 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=63.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC----Ccc--h
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HES--F 870 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG----hEs--f 870 (923)
.+|||++|+||||+|... +.+|+.....+.....+.. |+.+. -+....-+||||.| |.+ .
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g----------T~~cd---wwf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG----------TRNCD---WWFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC----------CcccC---cccccceEEEcCCcceecccCcch
Confidence 689999999999998753 4444432222211111110 11111 11123488999999 211 1
Q ss_pred h--hH---------HHhhccCCCEEEEEEeCCCCCCH--hHH-HHHHHH----------HhcCCcEEEEEeCCCcC
Q 002428 871 T--NL---------RSRGSGLCDIAILVVDIMHGLEP--QTI-ESLNLL----------KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~--nl---------rs~~ls~aDiVILVVDas~gle~--qti-EsL~lL----------kk~~iP~IVVLNKIDLL 922 (923)
. .. .++..+-.|+||+.+++.+-++. ... .++..| ....+||+|++||+|++
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred hhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 1 11 23445678999999999873332 222 112212 22368999999999997
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00062 Score=83.40 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.+|+|||++|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999999754
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.28 E-value=0.00036 Score=76.40 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ 820 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq 820 (923)
++..+++|+|++|+|||||||.|++....
T Consensus 159 L~~k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 159 LKGKTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred hccceEEEECCCCCCHHHHHHHHhchhhc
Confidence 34467999999999999999999986543
No 397
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.28 E-value=0.0011 Score=66.24 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=46.3
Q ss_pred CCCEEEEeCCCCcchhhHHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDL 921 (923)
.+.++|||||+... ...... +..+|.+|+|+.+..........++..+...++++ .||+|+++.
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 46799999998643 222222 36899999999887655566667778888888875 578998863
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00044 Score=76.06 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+...+++|+|++|+|||||||+|++...
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4456799999999999999999987543
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.25 E-value=0.00017 Score=83.83 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
..+|.+||.+||||||+||.|.+... ..+.++|-|..|.+.++ .+.+.|.||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-------------------s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-------------------SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-------------------CCCceecCCCCc
Confidence 36799999999999999999998653 34445555554433222 255899999994
No 400
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.23 E-value=0.00047 Score=67.05 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.....+..||+||+|+|+..+...+...+..++... ++|+|+|+||+|++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 455788999999999999887776666666666655 89999999999984
No 401
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.20 E-value=0.00049 Score=76.24 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc------cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq------~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
.++|.|+|.||+|||||||+++...+. .|..+|+|..+...+.- ...+.+.+|||||.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri----------------~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRI----------------SHRPPVYLIDTPGI 206 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEe----------------ccCCceEEecCCCc
Confidence 356999999999999999999753332 44455666554332211 12355999999994
No 402
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.19 E-value=0.0012 Score=73.52 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.+|+|+|..++||||||.+|-+..
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc
Confidence 3459999999999999999997643
No 403
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.00015 Score=77.63 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCcch------hhHHHhhccCCC---EEEEEEeCCCCCCHhHHH-----HHHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESF------TNLRSRGSGLCD---IAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf------~nlrs~~ls~aD---iVILVVDas~gle~qtiE-----sL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.|+|+||+..+ .+.+.+.+..-+ ++|.++|+.-...+..+- .+..+.....|-|-|+.|+|++
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 34999999995432 222233333333 456666755433333322 2334455688999999999986
No 404
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00022 Score=80.79 Aligned_cols=66 Identities=29% Similarity=0.338 Sum_probs=54.2
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC-------CCCHhHHHHHHHHHhcC-CcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~-------gle~qtiEsL~lLkk~~-iP~IVVLNKIDLL 922 (923)
+.+++||.|||..|...+..+.+++|+++|+|-+.. ....|+.++..+...++ .++|+.+||+|-.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 459999999999999999999999999999988743 23568888877777775 4789999999964
No 405
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.12 E-value=0.0018 Score=59.32 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=44.3
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 797 CCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 797 I~VLG-~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
|+|+| ..|+||||+...|...-...+ ..... +..+.. +.++|||||+.... ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~--------~~vl~------------~d~d~~---~d~viiD~p~~~~~--~~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG--------KRVLL------------IDLDPQ---YDYIIIDTPPSLGL--LTR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC--------CcEEE------------EeCCCC---CCEEEEeCcCCCCH--HHH
Confidence 66777 569999999888764211100 00011 111111 45999999997443 333
Q ss_pred hhccCCCEEEEEEeCCC
Q 002428 876 RGSGLCDIAILVVDIMH 892 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~ 892 (923)
..+..||.+|++++...
T Consensus 57 ~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 57 NALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHCCEEEEeccCCH
Confidence 67788999999998865
No 406
>PRK13796 GTPase YqeH; Provisional
Probab=97.11 E-value=0.0006 Score=77.18 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
..|+|||.+|+|||||||+|+...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 468999999999999999998643
No 407
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.09 E-value=0.00017 Score=67.79 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccc---cceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR---ERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~---ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..++|+|++|+|||+++++|+........... .+...++...... .....+.......... ......+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 34889999999999999999864321000000 1111111111111 0000000001111011 11122333
Q ss_pred hHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHH-hcCCcEEEEEeC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 918 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLk-k~~iP~IVVLNK 918 (923)
..+...+.....+|+|||=.+.+ ....+..|..+. ..+++|||+++-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 45556666666799999988777 656666555443 335788888864
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.06 E-value=0.0024 Score=59.85 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=41.0
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC----CcEEEEEeC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN----TEFIVALNK 918 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~----iP~IVVLNK 918 (923)
.++|||||+.... .....+..||.+|+|+++...-......++..+...+ ..+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5999999986443 3445778899999999987644444445555555443 357788885
No 409
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.04 E-value=0.00065 Score=73.75 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=55.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch-----
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf----- 870 (923)
+|.++|.+.+|||||+..|.+...... ..++.+ ...+...+.|..+.|.|.|.||+..-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~va----------syeftt------l~~vpG~~~y~gaKiqlldlpgiiegakdgk 124 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVA----------AYEFTT------LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK 124 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccc----------ccccee------EEEecceEeccccceeeecCcchhcccccCC
Confidence 689999999999999999987432211 111110 01122334566788999999996432
Q ss_pred --hhHHHhhccCCCEEEEEEeCCCCC
Q 002428 871 --TNLRSRGSGLCDIAILVVDIMHGL 894 (923)
Q Consensus 871 --~nlrs~~ls~aDiVILVVDas~gl 894 (923)
..+.....+.|++|++|+|+..++
T Consensus 125 grg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 125 GRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCccEEEEEeecccEEEEEeeccCcc
Confidence 223445568899999999998543
No 410
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.04 E-value=0.00033 Score=73.26 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|.|.|++|+|||+||-.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 4689999999999999988764
No 411
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0011 Score=71.54 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc-cccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN-ATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~-~~~k~~~L~IIDTPGhEsf~n 872 (923)
.|+|+++|+-.+|||++..-.++.- +..+ +.|+... ..+... +......+.+||.||+..|..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPne---------TlflEST------ski~~d~is~sfinf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNE---------TLFLEST------SKITRDHISNSFINFQVWDFPGQMDFFD 90 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCc---------eeEeecc------CcccHhhhhhhhcceEEeecCCccccCC
Confidence 3669999999999999887665432 1111 1111110 001000 001224589999999876543
Q ss_pred ---HHHhhccCCCEEEEEEeCCCCCC-HhHHHHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 873 ---LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ---lrs~~ls~aDiVILVVDas~gle-~qtiEsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
-..+.++.|-++|||||+..... ..+.-++...+ +.++.|=|++.|+|-|
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 23466789999999999876322 11111222222 2256788999999965
No 412
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.94 E-value=0.0038 Score=71.99 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+.|.|+||+-+||||||.+|..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 36799999999999999999964
No 413
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.89 E-value=0.00087 Score=68.27 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|.|.+|+||||||..++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 414
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0026 Score=71.44 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.|.|||.-|+||||||+.|..++
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 48899999999999999997654
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0022 Score=73.53 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc---CCCCccee---ecceee--ecccccccceeeecc--------ccccCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE---GEAGGITQ---QIGATY--FPAENIRERTRELKA--------NATLKVP 857 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~---geagGIT~---qIgat~--~p~e~i~ekt~~I~~--------~~~~k~~ 857 (923)
..+|+++||+||||||.|-.|...-+.. ...+-||. +||+.. ..+..+......+.. ...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5569999999999999999886543310 11111221 122200 000000000000000 0123445
Q ss_pred CEEEEeCCCCcchhhHHH----hhccCC--CEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 858 GLLVIDTPGHESFTNLRS----RGSGLC--DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs----~~ls~a--DiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.++||||.|+..+..... .++..+ .-+.||++++.. .....+++..++..++.- |++||+|-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~~-~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPIDG-LIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcce-eEEEcccc
Confidence 699999999765543322 233333 345677776642 223334444555544432 34677773
No 416
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.0039 Score=69.03 Aligned_cols=134 Identities=22% Similarity=0.165 Sum_probs=68.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc------cccCCCCc---ce------eecce----------eeeccccccc
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGG---IT------QQIGA----------TYFPAENIRE 843 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~Llgtn------Vq~geagG---IT------~qIga----------t~~p~e~i~e 843 (923)
....|-|.-+|.|.-|+|||||||+|+... |...+.|. +. +..+. .|+.......
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 345677778999999999999999998532 11111111 10 00111 1111110000
Q ss_pred ceeeecccc-ccCCCCEEEEeCCCCcchhhHHHhhc--------cCCCEEEEEEeCCCCCCHhHHH----HH-HHHHhcC
Q 002428 844 RTRELKANA-TLKVPGLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIE----SL-NLLKMRN 909 (923)
Q Consensus 844 kt~~I~~~~-~~k~~~L~IIDTPGhEsf~nlrs~~l--------s~aDiVILVVDas~gle~qtiE----sL-~lLkk~~ 909 (923)
-++.|.... .-.....++|.|.|..+-..+.+.++ -..|+||.|||+-|.+...+.. ++ ....+.-
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA 211 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA 211 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh
Confidence 011111111 11224489999999876655554433 2368999999998732111110 11 1111212
Q ss_pred CcEEEEEeCCCcC
Q 002428 910 TEFIVALNKVRFS 922 (923)
Q Consensus 910 iP~IVVLNKIDLL 922 (923)
..--|++||.||+
T Consensus 212 ~AD~II~NKtDli 224 (391)
T KOG2743|consen 212 LADRIIMNKTDLV 224 (391)
T ss_pred hhheeeecccccc
Confidence 2335778999986
No 417
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.011 Score=60.84 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Ll 815 (923)
++|+|.|+||+|||||+..|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHH
Confidence 569999999999999998886
No 418
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.70 E-value=0.002 Score=73.49 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
-++++|.|||.+++|||||||+|....+ ..|..+|+|..+...+. ...|.|+|.||+.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-------------------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-------------------DKKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-------------------cCCceeccCCcee
Confidence 4577899999999999999999986553 44555566554432211 1348999999953
No 419
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.69 E-value=0.0022 Score=65.21 Aligned_cols=56 Identities=25% Similarity=0.136 Sum_probs=40.3
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.+..|..++..++..+|+||||||+++........+ .....+.|+|||+||+|++
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcC
Confidence 3344467888899999999999999987543322222 1223468999999999985
No 420
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.68 E-value=0.014 Score=60.98 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.+.++|||||+.... .....+..+|.||+|+++...........+.++...+++ +.||+|+++.
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 367999999986443 334456789999999998754334444455555556666 4689999864
No 421
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.67 E-value=0.0052 Score=68.30 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC--
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-- 866 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG-- 866 (923)
|...|.|.++|+|++|.|||+++.+|............ ..+ .++++.+|.
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-------~~~---------------------PVv~vq~P~~p 107 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-------ERI---------------------PVVYVQMPPEP 107 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-------ccc---------------------cEEEEecCCCC
Confidence 45577777999999999999999999864422111000 000 133333332
Q ss_pred ----------------------CcchhhHHHhhccCCCEEEEEEeCCCCC----CHhHHHHHHHHH----hcCCcEEEEE
Q 002428 867 ----------------------HESFTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESLNLLK----MRNTEFIVAL 916 (923)
Q Consensus 867 ----------------------hEsf~nlrs~~ls~aDiVILVVDas~gl----e~qtiEsL~lLk----k~~iP~IVVL 916 (923)
......+....++.+.+=+||||=.|.+ ..+...+++.|+ ...+|+|+|+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 1112233446677888899999976642 334445555443 3478999988
Q ss_pred eC
Q 002428 917 NK 918 (923)
Q Consensus 917 NK 918 (923)
+.
T Consensus 188 t~ 189 (302)
T PF05621_consen 188 TR 189 (302)
T ss_pred cH
Confidence 63
No 422
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.66 E-value=0.0018 Score=64.95 Aligned_cols=57 Identities=26% Similarity=0.258 Sum_probs=42.0
Q ss_pred CCCC-cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 864 TPGH-ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 864 TPGh-Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
-||| ....+.....+..+|+||+|+|+..++......++..+ .+.|+|+|+||+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 3676 34556677888999999999999876654444444443 357999999999984
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.0037 Score=70.10 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+...|+|+|-.|+||||.|..|..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 34566799999999999999988864
No 424
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.003 Score=60.32 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 002428 797 CCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llgt 817 (923)
++|+|++|+|||+|+..|+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 425
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.0081 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..|+|+|++|+|||||+..|+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46999999999999999999864
No 426
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.49 E-value=0.0084 Score=64.00 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHH------HhcCCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL------KMRNTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lL------kk~~iP~IVVLNKID 920 (923)
.+.++||||||+.+ .+....+..+|+||+.+.+.......+..++..+ .+.++|+.||+|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 46799999999754 4455678889999999887652222222333222 134678889999875
No 427
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.46 E-value=0.0033 Score=68.39 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=42.2
Q ss_pred CCCc-chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 865 PGHE-SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 865 PGhE-sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||. .........+..+|+||+|+|+..++......+..++ .+.|+|||+||+|++
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 7874 3344566788999999999999876665555555544 368999999999984
No 428
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.45 E-value=0.016 Score=62.02 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHH----HhcCCcE-EEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL----KMRNTEF-IVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lL----kk~~iP~-IVVLNKIDL 921 (923)
.+.++||||||..... .+...+..+|.+|+++.+..........++..+ ...++++ .||+|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3679999999864322 223347889999999987643222222233222 2335554 478899863
No 429
>PHA02518 ParA-like protein; Provisional
Probab=96.43 E-value=0.01 Score=60.49 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHH---HHHHHh--cCCc-EEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES---LNLLKM--RNTE-FIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEs---L~lLkk--~~iP-~IVVLNKID 920 (923)
.+.++||||||. +..+....+..+|.||+++.++.........+ +..+.. .+.| +.|++|+++
T Consensus 76 ~~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 76 GYDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred cCCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccC
Confidence 367999999997 34556678889999999999875322222222 322221 1354 456667654
No 430
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.31 E-value=0.0046 Score=66.40 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=41.5
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCC-CHhHH-HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gl-e~qti-EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++..++.++|++|+|+|+..+. ....+ .++..+...++|+|||+||+||+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 455666667899999999999998643 44333 34445556789999999999985
No 431
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.011 Score=68.34 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=52.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc------CccccC-----CCC------cceeecceeeecccccccceeeec-c---ccc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG------TNVQEG-----EAG------GITQQIGATYFPAENIRERTRELK-A---NAT 853 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg------tnVq~g-----eag------GIT~qIgat~~p~e~i~ekt~~I~-~---~~~ 853 (923)
.+|+++|--|+||||.+..|.. ..+..- ... .+..+++..+|+......-+ .|. . ...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv-~Iak~al~~ak 179 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV-EIAKAALEKAK 179 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH-HHHHHHHHHHH
Confidence 3588999999999999887742 111100 000 11223344444432111100 010 0 011
Q ss_pred cCCCCEEEEeCCCCcchhhHH------HhhccCCCEEEEEEeCCCC
Q 002428 854 LKVPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHG 893 (923)
Q Consensus 854 ~k~~~L~IIDTPGhEsf~nlr------s~~ls~aDiVILVVDas~g 893 (923)
...+.++||||.|........ ....-.+|=+|||+|++.|
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 223569999999954432211 1334568899999999864
No 432
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.25 E-value=0.006 Score=66.55 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC--------CHhHHHHHHHHHh-------cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLLKM-------RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl--------e~qtiEsL~lLkk-------~~iP~IVVLNKIDL 921 (923)
+.|..+|..|+-+-.+-|...+..+.+||||+.++..- ..-..+.|.+++. +.+.+||+|||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 45889999999888888999999999999999887521 1122234443332 24789999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 282 l 282 (379)
T KOG0099|consen 282 L 282 (379)
T ss_pred H
Confidence 6
No 433
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.24 E-value=0.0035 Score=62.62 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=44.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC---cEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i---P~IVVLNKIDL 921 (923)
+.++|||||+..... ....+..+|.+|+++++.......+..++..+...+. .+.+|+|+++.
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 779999999864433 5567789999999999875223333444555655552 45889999854
No 434
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.18 E-value=0.026 Score=60.41 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHH----hcCCc-EEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK----MRNTE-FIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLk----k~~iP-~IVVLNKID 920 (923)
.+.++||||||....... ...+..+|.+|+++.+..........++..+. ..+++ +.||+|+++
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~ 183 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSD 183 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Confidence 467999999985322211 23567899999988664321112222222222 23455 357889886
No 435
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.17 E-value=0.014 Score=50.44 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=25.1
Q ss_pred hccCCCEEEEEEeCCCCCCHhH---HHHHHHHHhc--CCcEEEEEeCCC
Q 002428 877 GSGLCDIAILVVDIMHGLEPQT---IESLNLLKMR--NTEFIVALNKVR 920 (923)
Q Consensus 877 ~ls~aDiVILVVDas~gle~qt---iEsL~lLkk~--~iP~IVVLNKID 920 (923)
..+..++|||++|++..+.... +.++..++.. +.|+|+|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4467889999999997444322 2333344433 799999999998
No 436
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.12 E-value=0.035 Score=57.65 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCcchhhHHH-hhccCCCEEEEEEeCCCCCC---HhHHHHHHHHHhc-CCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs-~~ls~aDiVILVVDas~gle---~qtiEsL~lLkk~-~iP-~IVVLNKIDL 921 (923)
.+.++||||||......+.. ..+..||.+|+|+.+..... ......+..+... +.+ ..||+|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 36799999988653222211 11247999999998764221 1222333333322 444 4589999874
No 437
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.07 E-value=0.0039 Score=61.71 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999975
No 438
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.06 E-value=0.0034 Score=76.24 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=30.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ 829 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~ 829 (923)
..+..|.|+|||..++|||+.+..|++..|..-..+.+|.
T Consensus 25 ~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTR 64 (657)
T KOG0446|consen 25 SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTR 64 (657)
T ss_pred CcccCCceEEecCCCCcchhHHHHhhccccccccccceec
Confidence 3466778999999999999999999997766433343443
No 439
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.05 E-value=0.0056 Score=67.02 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCCCcc-hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 864 TPGhEs-f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
-|||.. ........+..+|+||+|+|+..++......+..++. +.|+|||+||+|++
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 488742 3445667889999999999998766655544444443 78999999999984
No 440
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.04 E-value=0.018 Score=67.66 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.+..|+|||..++||||||.+|.+..-. .-+.-++.+|+...... .-....+.||-..|...|..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~~-----~~~~aLeYty~~v~d~~----------~dd~~rl~vw~L~g~~~~~~ 88 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIEDP-----KKGLALEYTYLDVKDED----------RDDLARLNVWELDGDPSHSD 88 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCCC-----CCCcccceEEEeeccCc----------CCcCceeeEEEcCCCcchHh
Confidence 3456999999999999999998753311 11122333333221110 00112366666666555666
Q ss_pred HHHhhccC---C-CEEEEEEeCCCC
Q 002428 873 LRSRGSGL---C-DIAILVVDIMHG 893 (923)
Q Consensus 873 lrs~~ls~---a-DiVILVVDas~g 893 (923)
+....+.. . -+||||+|.+.+
T Consensus 89 LLk~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 89 LLKFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred HhcccCCcccccceEEEEEecCCCh
Confidence 66544432 2 268888999874
No 441
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.97 E-value=0.0046 Score=67.70 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+||||++..|..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 442
>PRK11670 antiporter inner membrane protein; Provisional
Probab=95.96 E-value=0.028 Score=64.07 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDL 921 (923)
.+.|+|||||.......+....+..+|.+|+|+.+...........+..+...++|++ ||+|+++.
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 4679999998754433344444556899999987755333445556666677788864 78898763
No 443
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.95 E-value=0.0051 Score=58.82 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=95.93 E-value=0.0071 Score=68.48 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.+|+|+|.+|+|||||+|.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998744
No 445
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.022 Score=65.12 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=20.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+.-+|.|+|-.|+||||.|..|..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHH
Confidence 4445688999999999999988864
No 446
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.066 Score=65.02 Aligned_cols=8 Identities=50% Similarity=0.459 Sum_probs=3.3
Q ss_pred EEEEEeCC
Q 002428 912 FIVALNKV 919 (923)
Q Consensus 912 ~IVVLNKI 919 (923)
||.|+||-
T Consensus 1077 iI~Vlnkd 1084 (1118)
T KOG1029|consen 1077 IINVLNKD 1084 (1118)
T ss_pred EEEecCCC
Confidence 34444443
No 447
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.86 E-value=0.037 Score=57.90 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHH-HHHHh--cCCcEEEEEeCCCc
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVRF 921 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL-~lLkk--~~iP~IVVLNKIDL 921 (923)
.++|||||+. +..+....+..+|.+|+++.+...........+ .++.. ...++.||+|+++.
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 6999999985 445566778899999999987641111111122 22221 23457789999874
No 448
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.85 E-value=0.019 Score=66.10 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=26.5
Q ss_pred cccCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 780 EVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 780 ~~~~l~~~~~enlRnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+...+++.... ....+|||+|+.|+|||||++.|...
T Consensus 206 ~w~~i~~~vr~-~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 206 YWEYIPTEVRP-FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred HHHhcCHHHhh-CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444444333 34456999999999999999999753
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.78 E-value=0.037 Score=57.16 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
++.++|+|+|.+|+|||||+.+|+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 5677899999999999999999985
No 450
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.71 E-value=0.0077 Score=68.71 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=25.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+-..+.|.|||.+++||||+||.|+..+|
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccc
Confidence 34567799999999999999999998765
No 451
>PF05729 NACHT: NACHT domain
Probab=95.70 E-value=0.019 Score=55.47 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|.+|+|||||+..|..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999875
No 452
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.70 E-value=0.053 Score=59.75 Aligned_cols=64 Identities=9% Similarity=-0.048 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHH---HHHHHh-cCCc-EEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES---LNLLKM-RNTE-FIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEs---L~lLkk-~~iP-~IVVLNKID 920 (923)
.+.++||||||..... .+...+..||.||+++.+..........+ +..+.. .+++ ..||+|+++
T Consensus 115 ~yD~IiIDt~~~l~~~-a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVCG-GFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCcceec-hhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 4679999999863222 22245678999999998764221222222 233322 2343 347889876
No 453
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.68 E-value=0.042 Score=56.96 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-++.|.|++|+|||+|+..|+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHH
Confidence 446889999999999999988754
No 454
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.66 E-value=0.017 Score=57.66 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 002428 797 CCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llgt 817 (923)
++|.|++|+|||+|+..|+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999988753
No 455
>PRK11519 tyrosine kinase; Provisional
Probab=95.64 E-value=0.046 Score=67.27 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=47.6
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDL 921 (923)
+.++|||||........ ....+.||++|||+....-........+..+...+++++ +|+|+++.
T Consensus 636 yD~ViiDtpP~~~v~Da-~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 636 YDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred CCEEEEeCCCcccchHH-HHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 56999999986543322 245688999999998876445556667778888888866 89999864
No 456
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=95.63 E-value=0.028 Score=61.93 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=37.6
Q ss_pred cCCCCEEEEeCCC-CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEE
Q 002428 854 LKVPGLLVIDTPG-HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915 (923)
Q Consensus 854 ~k~~~L~IIDTPG-hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVV 915 (923)
|....|+|||||- ..+-......++...+++|+|--+..-.......-+.+++..++|++=+
T Consensus 154 wg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGv 216 (300)
T KOG3022|consen 154 WGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGV 216 (300)
T ss_pred CCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEE
Confidence 3445699999974 3222222334555558888887654433334444567888889997644
No 457
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.58 E-value=0.013 Score=63.32 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+...++|.|++|+|||+|+..|+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456889999999999999998753
No 458
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.57 E-value=0.052 Score=58.23 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHH----HhcCCcE-EEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL----KMRNTEF-IVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lL----kk~~iP~-IVVLNKID 920 (923)
.+.++||||||...... ....+..+|.+|+++.+..........++..+ ...++++ .||+|+++
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 36799999998643222 23346789999999976542111112222222 2345664 47889865
No 459
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.56 E-value=0.029 Score=69.08 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDL 921 (923)
+.++|||||+....... ...+..||++|+|+.............+..+...+.++ .||+|++|.
T Consensus 656 yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 656 SDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred CCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 56999999997543332 33456799999999876544456666777777777765 599999874
No 460
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.54 E-value=0.019 Score=60.92 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+.-.++|.|++|+|||+|...|+....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999998876443
No 461
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.52 E-value=0.037 Score=58.05 Aligned_cols=64 Identities=17% Similarity=-0.037 Sum_probs=45.7
Q ss_pred CCEEEEeCCCCcchhhH-HHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCC
Q 002428 857 PGLLVIDTPGHESFTNL-RSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVR 920 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nl-rs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKID 920 (923)
+.++|||||........ ....+. .++.+|||+.+...........+..+...+++ ..+|+|++.
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 67999999975433332 223333 46899999998876666777788888888776 478889875
No 462
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.51 E-value=0.017 Score=65.53 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=40.2
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.|..++..++...++||+|||+.+........+...+ .+.|+|||+||+|++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 457888888888899999999999774433333333332 268999999999985
No 463
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.49 E-value=0.061 Score=66.34 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=47.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDL 921 (923)
+.++|||||......... .....||++|||+.............+..+...++++ -+|+|.++.
T Consensus 641 yD~IIIDtPP~~~~~Da~-~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 641 YDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred CCEEEEeCCCccccchHH-HHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 569999999875543332 2347899999999876655566677778887778775 489999874
No 464
>PRK04195 replication factor C large subunit; Provisional
Probab=95.49 E-value=0.038 Score=64.79 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|.|++|+|||||+..|..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999975
No 465
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.47 E-value=0.044 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..|+|+|++|+|||+|++.|...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999763
No 466
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.45 E-value=0.046 Score=50.96 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|.|++|+|||+|+..|..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999976
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.44 E-value=0.023 Score=63.89 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..++.|+|++|+|||||+-.|+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~ 77 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIA 77 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999887764
No 468
>PRK00098 GTPase RsgA; Reviewed
Probab=95.40 E-value=0.022 Score=62.90 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=33.9
Q ss_pred ccCCCEEEEEEeCCCCC-CHhH-HHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 878 SGLCDIAILVVDIMHGL-EPQT-IESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 878 ls~aDiVILVVDas~gl-e~qt-iEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.++|++|+|+|+.+.. .... ..++..+...++|+|||+||+||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 58899999999997643 2222 345555667789999999999984
No 469
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.33 E-value=0.053 Score=61.55 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ 820 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq 820 (923)
+.-+-|+++|+|+.++|||||+..|+...+.
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk 129 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVK 129 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHHHHHHH
Confidence 3456789999999999999999999764443
No 470
>PRK12289 GTPase RsgA; Reviewed
Probab=95.29 E-value=0.022 Score=64.65 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=35.8
Q ss_pred HhhccCCCEEEEEEeCCCC-CCHhH-HHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHG-LEPQT-IESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~g-le~qt-iEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
...+.++|+||||+|+... +.+.. ..+|..+...++|+|||+||+||+
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3457889999999999864 34422 344555556789999999999985
No 471
>PRK09354 recA recombinase A; Provisional
Probab=95.28 E-value=0.027 Score=63.93 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..++.|.|++|+|||||+-.|+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~ 82 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIA 82 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999999988864
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.26 E-value=0.023 Score=57.76 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||...|..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34599999999999999999864
No 473
>PRK04328 hypothetical protein; Provisional
Probab=95.24 E-value=0.033 Score=59.86 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+.-.++|.|++|+|||+|...|+...+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455689999999999999998876443
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.022 Score=58.77 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
++|+|||++|+|||||...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.17 E-value=0.037 Score=59.21 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|+|++|+|||+|+..|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
No 476
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.13 E-value=0.061 Score=58.90 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-++||||+.||||||||.+|.+.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 456899999999999999999873
No 477
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.13 E-value=0.05 Score=55.60 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++++|||+|...|..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999875
No 478
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.09 E-value=0.044 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|||||+|+..|..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999875
No 479
>PF13479 AAA_24: AAA domain
Probab=95.08 E-value=0.016 Score=60.66 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHH
Q 002428 793 RSPICCIMGHVDTGKTKLLDCI 814 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~L 814 (923)
++++|+|.|++|+|||||+..|
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 3567999999999999999998
No 480
>PRK07261 topology modulation protein; Provisional
Probab=95.08 E-value=0.026 Score=57.28 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 481
>PRK08118 topology modulation protein; Reviewed
Probab=95.06 E-value=0.028 Score=57.01 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||...|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 482
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.17 Score=61.78 Aligned_cols=29 Identities=38% Similarity=0.614 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002428 515 REMQEALARRKEAEERKKREEEERLRKEE 543 (923)
Q Consensus 515 ~~~qe~l~~~keeEE~~kreEEEr~rreE 543 (923)
++|.++..+.+++-+++.|+|++++.|+.
T Consensus 334 q~leeqqqreree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 334 QALEEQQQREREEVEQKEREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555444443
No 483
>PRK04296 thymidine kinase; Provisional
Probab=95.01 E-value=0.14 Score=52.94 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=24.8
Q ss_pred CEEEEEEeCCCCCCH-hHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 882 DIAILVVDIMHGLEP-QTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 882 DiVILVVDas~gle~-qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
+.-|+|||-.+.+.. +..+++..+...++++|+.+--.|
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 345677887766533 355566676777888777665433
No 484
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.027 Score=65.78 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
+-|...|+|||-.|+||||-|-.|.
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIa 399 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIA 399 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHH
Confidence 3467789999999999999887764
No 485
>PRK06762 hypothetical protein; Provisional
Probab=94.95 E-value=0.06 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|.+|+||||+...|..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999864
No 486
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.069 Score=66.85 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=59.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc---chh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---SFT 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE---sf~ 871 (923)
.-++|.|+.|+|||||...|...-+ +..+.+......|..+. .|... ....+.|+.||...+. .+.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~---C~~~~~~~pCg~C~sC~-------~~~~g-~~~~~dv~eidaas~~~Vd~iR 106 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLN---CVEGPTSTPCGECDSCV-------ALAPG-GPGSLDVTEIDAASHGGVDDAR 106 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---cccCCCCCCCcccHHHH-------HHHcC-CCCCCcEEEecccccCCHHHHH
Confidence 3478999999999999998864211 00000000000010000 00000 1122346677764432 222
Q ss_pred hHHHhhc---cCCCEEEEEEeCCCCCCHhHHHHH-HHHHhc--CCcEEEEEeCCCcCC
Q 002428 872 NLRSRGS---GLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVRFSF 923 (923)
Q Consensus 872 nlrs~~l---s~aDiVILVVDas~gle~qtiEsL-~lLkk~--~iP~IVVLNKIDLL~ 923 (923)
.++...+ .....-|||||-.|.++......| .+|... ++-|||+.|..|.||
T Consensus 107 ~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 107 ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 2222111 224566788888888877665544 344442 455677777777653
No 487
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.89 E-value=0.1 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.+++|+|++|+|||||++.|++.-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 469999999999999999998643
No 488
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.13 Score=59.92 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+|||+|+.|+||||||..|++.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999999874
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=94.84 E-value=0.046 Score=62.05 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=36.4
Q ss_pred ccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 878 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 878 ls~aDiVILVVDas~gle~qti-EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..++|.+|+|+++...+....+ .+|..+...++|.|||+||+||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4779999999999877776444 45666777899999999999985
No 490
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.80 E-value=0.11 Score=57.53 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Ll 815 (923)
.|+|+|++||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999985
No 491
>PRK05973 replicative DNA helicase; Provisional
Probab=94.79 E-value=0.046 Score=59.06 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.-.++|.|.+|+|||+|.-.|+..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446889999999999999988753
No 492
>PHA00729 NTP-binding motif containing protein
Probab=94.78 E-value=0.038 Score=59.34 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||..+|..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 493
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=94.78 E-value=0.15 Score=55.88 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=40.9
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE---EEEEeCCC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF---IVALNKVR 920 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~---IVVLNKID 920 (923)
.++|||||+..++..+ ..+..+|.+|+|..+....-...+..+..+...+.+. ++|+|++.
T Consensus 114 D~iliD~~aGl~~~~~--~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 114 DYILIDTGAGLSRDTL--SFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred CEEEEeCCCCccHHHH--HHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 5999999976544443 3334449999998876544445566666677766653 38999985
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.068 Score=55.31 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
...|+|+|++|+|||||++.|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999999864
No 495
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.70 E-value=0.057 Score=66.84 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.8
Q ss_pred EcCCCCCHHHHHHHHHcCccccCCC
Q 002428 800 MGHVDTGKTKLLDCIRGTNVQEGEA 824 (923)
Q Consensus 800 LG~~GSGKSTLLN~LlgtnVq~gea 824 (923)
+|+-++|||||||+|++++|.....
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~ 25 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE 25 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc
Confidence 5899999999999999999886543
No 496
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.70 E-value=0.066 Score=57.73 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=40.2
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCC---HhHHHHHHHH---HhcCCcEEEEEeCCC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLL---KMRNTEFIVALNKVR 920 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle---~qtiEsL~lL---kk~~iP~IVVLNKID 920 (923)
+.|+||||+|..+.. ....+..+|+||+-+-.+..-. ..++.++..+ ..+.+|+.|++|++.
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 468999999975433 3455677999888766554222 2333333322 244689999999886
No 497
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.67 E-value=0.11 Score=55.94 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCcchhhH-HHhhccCCCEEEEEEeCCCCCCH---hHHHHHHHHHhcCCcEE-EEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNL-RSRGSGLCDIAILVVDIMHGLEP---QTIESLNLLKMRNTEFI-VALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nl-rs~~ls~aDiVILVVDas~gle~---qtiEsL~lLkk~~iP~I-VVLNKID 920 (923)
.+.++||||||......+ ....+..+|.+|+|+.+...... ..+..+..+...+.++. ||+|..+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 367999999986431211 12234578999999986542111 22333333333456663 7778754
No 498
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.026 Score=61.34 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.=.|+||||+|||||||++.|.+-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999998743
No 499
>PTZ00121 MAEBL; Provisional
Probab=94.56 E-value=0.28 Score=63.19 Aligned_cols=212 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhcCcchhhhhccHHHHHHHHHHcCCCCCCccccccCCCCCCCCCCCCccccccchhhhhhHHHHHHh
Q 002428 387 VAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKK 466 (923)
Q Consensus 387 ~~~~~~~~kkkk~k~k~K~~~~~~~~ed~dk~lael~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ee~e~~~aa~kkKK 466 (923)
.....+....+|..+.+++-..++..++.+++.|+.+...++....+...-.+.........-...+......+.....+
T Consensus 1466 ~ee~kka~~~kk~~ee~kka~~~kkk~ee~~kk~~~~kk~~e~~kk~~~~kkae~~~k~~e~kkaeeaKKaeEaKKaEE~ 1545 (2084)
T PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545 (2084)
T ss_pred HHHHHhHHHHHhhHHHHHhHHHHhhhhHHHHHHHHHHhhhhHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcchhhhhhh----ccCCCCCCCCcch-----------hHHHHHHHHHHHHHHHHHHHH
Q 002428 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETK----KNDGKSKGPEKKM-----------SKQVREMQEALARRKEAEERK 531 (923)
Q Consensus 467 KKKeKekekkaa~~~aaa~~~e~~~e~~e~~----k~~~k~k~~~KK~-----------~a~~~~~qe~l~~~keeEE~~ 531 (923)
+|.+..+..+....+...+..+......+.+ .....-+...... ....+..++..+..++..|..
T Consensus 1546 kKAee~kKaee~kK~Ee~kk~eekr~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~ 1625 (2084)
T PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 002428 532 KREEEERLR-----KEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598 (923)
Q Consensus 532 kreEEEr~r-----reEEE~~~~eEeer~~eE~k~~kkekekekke~~KkEGKlLTkKQKeekar~ea~~~~ 598 (923)
+++||++.| +.++++.++.|+.+..+++.+++.+..+.+.+.-++.-.-+.++..+++.+.++....
T Consensus 1626 kk~eeekKk~Eelkk~eeE~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe~kk~~ee~~k~~e~~kk~ 1697 (2084)
T PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697 (2084)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhH
No 500
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.55 E-value=0.055 Score=56.71 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|.|++|+|||+|+..|+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~ 35 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAE 35 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 688999999999999888764
Done!