Query 002428
Match_columns 923
No_of_seqs 391 out of 1339
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 99.8 4.4E-19 1.5E-23 207.2 10.1 132 791-922 2-135 (594)
2 2lkc_A Translation initiation 99.7 4E-18 1.4E-22 162.8 11.7 115 792-922 6-120 (178)
3 1zo1_I IF2, translation initia 99.7 2.3E-18 7.9E-23 197.6 7.7 115 792-922 2-116 (501)
4 3izy_P Translation initiation 99.7 6.6E-18 2.3E-22 195.3 4.6 115 793-922 3-117 (537)
5 4bas_A ADP-ribosylation factor 99.7 1.4E-16 4.6E-21 155.2 11.8 117 789-922 12-140 (199)
6 1wb1_A Translation elongation 99.7 7E-17 2.4E-21 184.0 10.2 118 789-922 14-138 (482)
7 2dyk_A GTP-binding protein; GT 99.7 3.2E-16 1.1E-20 146.9 12.5 112 795-922 2-121 (161)
8 3vqt_A RF-3, peptide chain rel 99.7 8.1E-17 2.8E-21 186.4 10.2 128 789-922 28-165 (548)
9 1wf3_A GTP-binding protein; GT 99.7 3.5E-16 1.2E-20 168.0 14.1 116 791-922 4-130 (301)
10 2efe_B Small GTP-binding prote 99.7 2.1E-16 7.1E-21 151.3 11.1 118 791-922 9-130 (181)
11 1ek0_A Protein (GTP-binding pr 99.7 2.3E-16 7.7E-21 148.5 10.9 116 793-922 2-121 (170)
12 4fn5_A EF-G 1, elongation fact 99.7 6.2E-17 2.1E-21 192.2 7.3 130 789-923 10-151 (709)
13 3kkq_A RAS-related protein M-R 99.6 3.2E-16 1.1E-20 151.0 10.5 118 790-922 14-136 (183)
14 1c1y_A RAS-related protein RAP 99.6 4.1E-16 1.4E-20 146.7 11.0 116 792-922 1-121 (167)
15 2y8e_A RAB-protein 6, GH09086P 99.6 3.6E-16 1.2E-20 148.6 10.7 118 791-922 11-132 (179)
16 3bc1_A RAS-related protein RAB 99.6 4.9E-16 1.7E-20 149.4 11.6 124 793-922 10-140 (195)
17 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.8E-16 9.5E-21 150.7 9.8 116 792-922 3-122 (186)
18 3tkl_A RAS-related protein RAB 99.6 4.1E-16 1.4E-20 151.4 11.1 116 793-922 15-134 (196)
19 1kao_A RAP2A; GTP-binding prot 99.6 3.7E-16 1.3E-20 146.2 10.4 116 792-922 1-121 (167)
20 3j2k_7 ERF3, eukaryotic polype 99.6 4.5E-16 1.5E-20 175.3 13.0 129 793-922 16-168 (439)
21 2bme_A RAB4A, RAS-related prot 99.6 3.3E-16 1.1E-20 150.9 10.2 116 793-922 9-128 (186)
22 3t1o_A Gliding protein MGLA; G 99.6 6.9E-16 2.4E-20 149.0 12.4 122 792-922 12-148 (198)
23 3j25_A Tetracycline resistance 99.6 7.6E-17 2.6E-21 189.5 6.8 126 792-922 2-132 (638)
24 1z06_A RAS-related protein RAB 99.6 3.6E-16 1.2E-20 152.3 10.5 119 790-922 16-140 (189)
25 3tw8_B RAS-related protein RAB 99.6 3E-16 1E-20 149.5 9.5 115 794-922 9-126 (181)
26 1r2q_A RAS-related protein RAB 99.6 4.3E-16 1.5E-20 146.6 10.3 117 792-922 4-124 (170)
27 1wms_A RAB-9, RAB9, RAS-relate 99.6 6.9E-16 2.4E-20 147.2 11.6 116 793-922 6-129 (177)
28 1upt_A ARL1, ADP-ribosylation 99.6 8.5E-16 2.9E-20 145.4 11.9 110 794-922 7-121 (171)
29 1z0f_A RAB14, member RAS oncog 99.6 5.3E-16 1.8E-20 147.5 10.5 116 793-922 14-133 (179)
30 1z08_A RAS-related protein RAB 99.6 4.5E-16 1.5E-20 147.2 9.9 115 794-922 6-124 (170)
31 1ky3_A GTP-binding protein YPT 99.6 5.3E-16 1.8E-20 147.9 10.4 117 793-922 7-131 (182)
32 4dhe_A Probable GTP-binding pr 99.6 5.7E-16 2E-20 154.4 11.0 116 792-922 27-157 (223)
33 3clv_A RAB5 protein, putative; 99.6 9.2E-16 3.2E-20 147.8 11.9 129 793-921 6-159 (208)
34 2h57_A ADP-ribosylation factor 99.6 6.3E-16 2.2E-20 150.7 10.8 119 787-922 14-139 (190)
35 1z2a_A RAS-related protein RAB 99.6 4.2E-16 1.4E-20 146.7 9.2 116 793-922 4-122 (168)
36 3cph_A RAS-related protein SEC 99.6 5.1E-16 1.7E-20 153.0 10.2 115 793-921 19-137 (213)
37 1z0j_A RAB-22, RAS-related pro 99.6 6.1E-16 2.1E-20 145.9 10.2 117 792-922 4-124 (170)
38 1svi_A GTP-binding protein YSX 99.6 1.1E-15 3.6E-20 148.7 12.2 114 792-922 21-147 (195)
39 1g16_A RAS-related protein SEC 99.6 3.1E-16 1E-20 147.9 8.1 113 795-921 4-120 (170)
40 2h17_A ADP-ribosylation factor 99.6 9.3E-16 3.2E-20 148.7 11.7 117 787-922 14-135 (181)
41 3iev_A GTP-binding protein ERA 99.6 8E-16 2.8E-20 165.1 12.1 117 790-922 6-135 (308)
42 2oil_A CATX-8, RAS-related pro 99.6 6.4E-16 2.2E-20 150.7 10.2 117 792-922 23-143 (193)
43 2c78_A Elongation factor TU-A; 99.6 5.5E-16 1.9E-20 171.9 10.9 130 793-922 10-141 (405)
44 1zbd_A Rabphilin-3A; G protein 99.6 1.2E-15 3.9E-20 150.1 12.0 115 794-922 8-126 (203)
45 2fn4_A P23, RAS-related protei 99.6 6.8E-16 2.3E-20 147.0 10.0 116 792-922 7-127 (181)
46 2gf9_A RAS-related protein RAB 99.6 7.4E-16 2.5E-20 150.1 10.5 115 794-922 22-140 (189)
47 2g6b_A RAS-related protein RAB 99.6 9.7E-16 3.3E-20 146.5 11.0 117 793-922 9-129 (180)
48 2hxs_A RAB-26, RAS-related pro 99.6 3.9E-16 1.3E-20 149.0 8.2 118 792-922 4-128 (178)
49 2a5j_A RAS-related protein RAB 99.6 5E-16 1.7E-20 151.8 9.1 119 790-922 17-139 (191)
50 1u8z_A RAS-related protein RAL 99.6 9.2E-16 3.1E-20 143.7 10.5 115 793-922 3-122 (168)
51 1r8s_A ADP-ribosylation factor 99.6 2.3E-15 7.7E-20 141.9 13.1 109 795-922 1-114 (164)
52 2a9k_A RAS-related protein RAL 99.6 8.5E-16 2.9E-20 147.1 10.4 117 791-922 15-136 (187)
53 2il1_A RAB12; G-protein, GDP, 99.6 4.6E-16 1.6E-20 152.9 8.7 116 793-922 25-144 (192)
54 1x3s_A RAS-related protein RAB 99.6 7.3E-16 2.5E-20 149.2 9.8 117 792-922 13-134 (195)
55 2wji_A Ferrous iron transport 99.6 1.3E-15 4.4E-20 146.3 11.3 112 793-922 2-121 (165)
56 2ce2_X GTPase HRAS; signaling 99.6 1.2E-15 4.1E-20 142.3 10.7 115 793-922 2-121 (166)
57 3bwd_D RAC-like GTP-binding pr 99.6 5.8E-16 2E-20 148.3 8.9 117 791-922 5-125 (182)
58 1d2e_A Elongation factor TU (E 99.6 8.2E-16 2.8E-20 170.5 11.2 112 795-922 4-132 (397)
59 3t5g_A GTP-binding protein RHE 99.6 6.9E-16 2.4E-20 148.4 9.1 115 793-922 5-124 (181)
60 2erx_A GTP-binding protein DI- 99.6 1.1E-15 3.8E-20 144.0 10.3 114 794-922 3-122 (172)
61 1zd9_A ADP-ribosylation factor 99.6 9.7E-16 3.3E-20 149.8 10.1 113 792-922 20-137 (188)
62 3reg_A RHO-like small GTPase; 99.6 9.3E-16 3.2E-20 150.0 10.0 117 791-922 20-140 (194)
63 2bov_A RAla, RAS-related prote 99.6 1.5E-15 5E-20 148.6 11.1 117 791-922 11-132 (206)
64 3llu_A RAS-related GTP-binding 99.6 1.8E-15 6.1E-20 149.1 11.8 119 790-922 16-142 (196)
65 1vg8_A RAS-related protein RAB 99.6 9.9E-16 3.4E-20 150.3 9.9 116 793-922 7-130 (207)
66 2bcg_Y Protein YP2, GTP-bindin 99.6 1.1E-15 3.7E-20 150.9 10.1 115 794-922 8-126 (206)
67 3pqc_A Probable GTP-binding pr 99.6 2.5E-15 8.5E-20 145.1 12.4 113 792-922 21-146 (195)
68 2atx_A Small GTP binding prote 99.6 1.4E-15 4.9E-20 148.3 10.8 115 793-922 17-135 (194)
69 2fg5_A RAB-22B, RAS-related pr 99.6 1.6E-15 5.6E-20 148.7 11.1 117 792-922 21-141 (192)
70 1zun_B Sulfate adenylate trans 99.6 2.2E-15 7.6E-20 168.8 13.4 128 795-922 25-170 (434)
71 2q3h_A RAS homolog gene family 99.6 1.4E-15 4.8E-20 149.2 10.4 116 792-922 18-137 (201)
72 2p5s_A RAS and EF-hand domain 99.6 1.2E-15 4E-20 150.5 9.8 118 791-922 25-146 (199)
73 4gzl_A RAS-related C3 botulinu 99.6 1E-15 3.6E-20 152.3 9.5 117 791-922 27-147 (204)
74 4dkx_A RAS-related protein RAB 99.6 2E-15 6.8E-20 154.9 11.8 119 790-922 9-131 (216)
75 3sjy_A Translation initiation 99.6 3.4E-15 1.2E-19 165.6 14.4 130 791-922 5-142 (403)
76 3con_A GTPase NRAS; structural 99.6 1.8E-15 6.2E-20 146.8 10.7 119 789-922 16-139 (190)
77 2ew1_A RAS-related protein RAB 99.6 1.7E-15 5.9E-20 151.7 10.7 116 793-922 25-144 (201)
78 3q3j_B RHO-related GTP-binding 99.6 2.1E-15 7.1E-20 151.7 11.2 117 791-922 24-144 (214)
79 2nzj_A GTP-binding protein REM 99.6 2.4E-15 8.1E-20 142.9 11.0 114 794-922 4-124 (175)
80 3izq_1 HBS1P, elongation facto 99.6 2.2E-15 7.6E-20 176.5 13.1 132 791-922 164-318 (611)
81 1m7b_A RND3/RHOE small GTP-bin 99.6 1.9E-15 6.5E-20 146.9 10.5 116 792-922 5-124 (184)
82 1s0u_A EIF-2-gamma, translatio 99.6 2.9E-15 9.9E-20 166.5 13.3 130 793-922 7-148 (408)
83 4dsu_A GTPase KRAS, isoform 2B 99.6 1.8E-15 6E-20 145.5 10.1 114 794-922 4-122 (189)
84 2hup_A RAS-related protein RAB 99.6 1.6E-15 5.4E-20 150.6 10.0 117 792-922 27-147 (201)
85 2fu5_C RAS-related protein RAB 99.6 5.2E-16 1.8E-20 149.4 6.2 115 794-922 8-126 (183)
86 3i8s_A Ferrous iron transport 99.6 1.3E-15 4.4E-20 160.8 9.6 113 792-922 1-125 (274)
87 1kk1_A EIF2gamma; initiation o 99.6 2.3E-15 7.8E-20 167.2 12.1 128 795-922 11-150 (410)
88 2gco_A H9, RHO-related GTP-bin 99.6 3.1E-15 1E-19 148.0 11.6 114 794-922 25-142 (201)
89 2fv8_A H6, RHO-related GTP-bin 99.6 1.5E-15 5.2E-20 150.9 9.2 116 792-922 23-142 (207)
90 2qu8_A Putative nucleolar GTP- 99.6 4.8E-15 1.6E-19 150.0 13.0 115 792-922 27-155 (228)
91 3p26_A Elongation factor 1 alp 99.6 2.3E-15 7.8E-20 171.0 11.9 130 793-922 32-184 (483)
92 3k53_A Ferrous iron transport 99.6 1.4E-15 4.9E-20 159.1 9.4 113 792-922 1-122 (271)
93 1zj6_A ADP-ribosylation factor 99.6 2.9E-15 9.9E-20 145.7 10.9 112 792-922 14-130 (187)
94 2gf0_A GTP-binding protein DI- 99.6 2.4E-15 8.2E-20 146.4 10.0 116 792-922 6-127 (199)
95 2j0v_A RAC-like GTP-binding pr 99.6 1.6E-15 5.4E-20 150.4 8.8 116 792-922 7-126 (212)
96 3iby_A Ferrous iron transport 99.6 1.5E-15 5.3E-20 159.3 9.3 110 795-922 2-123 (256)
97 2fh5_B SR-beta, signal recogni 99.6 4.1E-15 1.4E-19 147.6 11.8 114 792-922 5-128 (214)
98 3oes_A GTPase rhebl1; small GT 99.6 2.5E-15 8.5E-20 148.4 10.2 117 791-922 21-142 (201)
99 1ksh_A ARF-like protein 2; sma 99.6 4.4E-15 1.5E-19 143.7 11.6 112 792-922 16-132 (186)
100 2ywe_A GTP-binding protein LEP 99.6 2.9E-15 9.9E-20 175.3 12.3 124 790-922 4-138 (600)
101 1r5b_A Eukaryotic peptide chai 99.6 1.3E-15 4.5E-20 172.7 9.1 66 857-922 121-194 (467)
102 2wjg_A FEOB, ferrous iron tran 99.6 2.2E-15 7.4E-20 145.7 9.3 114 791-922 4-125 (188)
103 2f7s_A C25KG, RAS-related prot 99.6 1.2E-15 4E-20 151.8 7.5 126 793-922 24-154 (217)
104 3tr5_A RF-3, peptide chain rel 99.6 1.6E-15 5.4E-20 175.1 9.6 128 795-922 14-147 (528)
105 2yc2_C IFT27, small RAB-relate 99.6 1.2E-15 4.2E-20 149.1 7.3 119 792-922 18-145 (208)
106 3q72_A GTP-binding protein RAD 99.6 3.6E-15 1.2E-19 140.8 10.2 113 794-922 2-119 (166)
107 1f60_A Elongation factor EEF1A 99.6 9.6E-16 3.3E-20 173.4 7.2 113 794-922 7-158 (458)
108 3cb4_D GTP-binding protein LEP 99.6 2.3E-15 7.8E-20 176.2 10.5 123 791-922 3-136 (599)
109 3gj0_A GTP-binding nuclear pro 99.6 9.6E-16 3.3E-20 153.5 6.1 118 791-922 12-132 (221)
110 3cpj_B GTP-binding protein YPT 99.6 2.1E-15 7.2E-20 151.8 8.5 115 794-922 13-131 (223)
111 3dz8_A RAS-related protein RAB 99.6 7.1E-16 2.4E-20 150.8 4.8 116 793-922 22-141 (191)
112 4djt_A GTP-binding nuclear pro 99.6 1.3E-15 4.6E-20 151.5 6.8 118 792-922 9-130 (218)
113 2j1l_A RHO-related GTP-binding 99.6 2.5E-15 8.4E-20 150.7 8.8 117 791-922 31-151 (214)
114 1fzq_A ADP-ribosylation factor 99.6 1.1E-14 3.8E-19 142.0 13.1 112 792-922 14-130 (181)
115 3c5c_A RAS-like protein 12; GD 99.6 3.9E-15 1.3E-19 145.9 9.9 117 790-922 17-140 (187)
116 3ihw_A Centg3; RAS, centaurin, 99.6 5.1E-15 1.7E-19 145.3 10.6 114 787-921 13-131 (184)
117 3a1s_A Iron(II) transport prot 99.6 4.4E-15 1.5E-19 155.8 10.8 112 793-922 4-123 (258)
118 2h5e_A Peptide chain release f 99.6 4E-15 1.4E-19 171.7 11.0 124 795-922 14-147 (529)
119 1gwn_A RHO-related GTP-binding 99.6 5.3E-15 1.8E-19 148.3 10.5 116 792-922 26-145 (205)
120 3q85_A GTP-binding protein REM 99.6 3.8E-15 1.3E-19 141.0 8.9 114 795-922 3-122 (169)
121 1ega_A Protein (GTP-binding pr 99.6 4.6E-15 1.6E-19 158.9 10.6 115 791-922 5-129 (301)
122 2o52_A RAS-related protein RAB 99.6 2.2E-15 7.4E-20 149.3 7.4 115 794-922 25-143 (200)
123 1nrj_B SR-beta, signal recogni 99.6 8.2E-15 2.8E-19 145.9 11.4 111 792-922 10-133 (218)
124 2elf_A Protein translation elo 99.6 4.4E-15 1.5E-19 164.2 10.3 101 796-921 23-125 (370)
125 1jny_A EF-1-alpha, elongation 99.6 3.5E-15 1.2E-19 167.4 9.4 129 794-922 6-157 (435)
126 2xtp_A GTPase IMAP family memb 99.6 1.3E-14 4.3E-19 149.9 12.9 115 791-922 19-152 (260)
127 2b6h_A ADP-ribosylation factor 99.6 9.7E-15 3.3E-19 144.0 11.4 112 792-922 27-143 (192)
128 1moz_A ARL1, ADP-ribosylation 99.6 4.8E-15 1.6E-19 142.4 8.9 112 792-922 16-132 (183)
129 2gj8_A MNME, tRNA modification 99.6 8.4E-15 2.9E-19 142.3 10.6 112 794-921 4-127 (172)
130 2x77_A ADP-ribosylation factor 99.6 3.2E-15 1.1E-19 145.3 7.7 112 792-922 20-136 (189)
131 1m2o_B GTP-binding protein SAR 99.6 1.8E-14 6.1E-19 141.9 12.8 112 792-922 21-137 (190)
132 2atv_A RERG, RAS-like estrogen 99.6 1.4E-14 4.9E-19 142.1 11.8 116 791-922 25-145 (196)
133 3mca_A HBS1, elongation factor 99.6 6.3E-16 2.2E-20 180.4 2.2 129 794-922 177-328 (592)
134 1f6b_A SAR1; gtpases, N-termin 99.6 1.1E-14 3.7E-19 144.5 10.8 112 792-922 23-139 (198)
135 1jwy_B Dynamin A GTPase domain 99.5 2.2E-14 7.5E-19 151.6 13.4 132 791-922 21-211 (315)
136 2rdo_7 EF-G, elongation factor 99.5 1.3E-14 4.3E-19 172.6 12.9 129 790-922 8-147 (704)
137 3lxw_A GTPase IMAP family memb 99.5 1.4E-14 4.7E-19 150.6 11.4 115 791-922 18-152 (247)
138 3l0i_B RAS-related protein RAB 99.5 6.3E-16 2.2E-20 152.4 1.2 116 793-922 32-151 (199)
139 2iwr_A Centaurin gamma 1; ANK 99.5 1.2E-14 4.2E-19 139.3 10.0 110 791-921 4-120 (178)
140 3b1v_A Ferrous iron uptake tra 99.5 1.6E-14 5.6E-19 153.2 11.2 110 794-922 3-120 (272)
141 1dar_A EF-G, elongation factor 99.5 1.3E-14 4.6E-19 172.0 11.4 128 795-922 13-142 (691)
142 2hjg_A GTP-binding protein ENG 99.5 1.4E-14 4.8E-19 162.3 10.7 113 794-922 3-124 (436)
143 3lxx_A GTPase IMAP family memb 99.5 2.3E-14 7.7E-19 146.5 11.2 114 792-922 27-158 (239)
144 3cbq_A GTP-binding protein REM 99.5 1.2E-14 4E-19 144.3 8.8 116 793-922 22-143 (195)
145 1mky_A Probable GTP-binding pr 99.5 3.5E-14 1.2E-18 159.2 13.6 112 795-922 2-123 (439)
146 2hjg_A GTP-binding protein ENG 99.5 8.4E-15 2.9E-19 164.1 8.5 114 793-922 174-299 (436)
147 2ged_A SR-beta, signal recogni 99.5 9.9E-15 3.4E-19 142.0 7.5 111 792-922 46-169 (193)
148 4dcu_A GTP-binding protein ENG 99.5 1.7E-14 5.8E-19 162.5 9.9 117 790-922 19-144 (456)
149 2cxx_A Probable GTP-binding pr 99.5 5.8E-14 2E-18 135.3 11.3 108 795-922 2-135 (190)
150 3th5_A RAS-related C3 botulinu 99.3 1.5E-15 5.1E-20 150.0 0.0 116 792-922 28-147 (204)
151 2xex_A Elongation factor G; GT 99.5 2.3E-14 7.7E-19 170.1 10.1 128 795-922 11-140 (693)
152 3avx_A Elongation factor TS, e 99.5 3.7E-14 1.3E-18 175.0 11.6 125 793-922 295-425 (1289)
153 3def_A T7I23.11 protein; chlor 99.5 5.1E-14 1.7E-18 146.9 10.7 115 792-922 34-164 (262)
154 1n0u_A EF-2, elongation factor 99.5 2.1E-14 7.1E-19 173.8 8.6 66 857-922 98-163 (842)
155 4dcu_A GTP-binding protein ENG 99.5 4.6E-14 1.6E-18 159.0 10.2 115 792-922 193-319 (456)
156 2aka_B Dynamin-1; fusion prote 99.5 1.5E-13 5.1E-18 143.7 13.2 132 791-922 23-205 (299)
157 3r7w_A Gtpase1, GTP-binding pr 99.5 8.6E-14 2.9E-18 149.1 11.4 113 795-922 4-128 (307)
158 2wkq_A NPH1-1, RAS-related C3 99.5 6.1E-14 2.1E-18 147.6 9.6 115 793-922 154-272 (332)
159 2zej_A Dardarin, leucine-rich 99.5 4.9E-14 1.7E-18 137.5 7.0 117 795-922 3-125 (184)
160 2dy1_A Elongation factor G; tr 99.5 1.5E-13 5.3E-18 162.3 12.4 128 795-922 10-139 (665)
161 3t5d_A Septin-7; GTP-binding p 99.4 2.5E-13 8.4E-18 142.7 11.8 122 794-922 8-157 (274)
162 1h65_A Chloroplast outer envel 99.4 2E-13 6.9E-18 142.8 10.9 115 792-922 37-167 (270)
163 3o47_A ADP-ribosylation factor 99.4 7E-14 2.4E-18 151.5 7.7 112 792-922 163-279 (329)
164 3qq5_A Small GTP-binding prote 99.4 5.5E-14 1.9E-18 158.4 6.8 112 794-922 34-153 (423)
165 3gee_A MNME, tRNA modification 99.4 1.1E-13 3.8E-18 157.9 9.0 111 794-922 233-356 (476)
166 2qpt_A EH domain-containing pr 99.4 2.4E-13 8.2E-18 157.6 11.6 131 792-922 63-231 (550)
167 3t34_A Dynamin-related protein 99.4 7.2E-13 2.5E-17 144.5 13.0 130 792-922 32-216 (360)
168 2f9l_A RAB11B, member RAS onco 99.4 4.7E-13 1.6E-17 132.1 9.9 114 795-922 6-123 (199)
169 3geh_A MNME, tRNA modification 99.4 2.7E-13 9.3E-18 154.2 8.8 111 794-922 224-343 (462)
170 3lvq_E ARF-GAP with SH3 domain 99.4 8.4E-13 2.9E-17 149.2 12.5 112 792-922 320-436 (497)
171 1xzp_A Probable tRNA modificat 99.4 2.8E-13 9.6E-18 154.9 8.6 110 795-922 244-363 (482)
172 2g3y_A GTP-binding protein GEM 99.4 9.1E-13 3.1E-17 134.4 11.4 117 793-922 36-158 (211)
173 2j69_A Bacterial dynamin-like 99.4 7.9E-13 2.7E-17 157.0 11.9 66 857-922 174-243 (695)
174 3r7w_B Gtpase2, GTP-binding pr 99.4 9.6E-13 3.3E-17 144.2 10.4 110 796-922 1-119 (331)
175 3dpu_A RAB family protein; roc 99.4 7.4E-13 2.5E-17 151.8 10.0 124 791-922 38-163 (535)
176 1mky_A Probable GTP-binding pr 99.4 1.5E-12 5.2E-17 145.9 11.3 114 793-922 179-305 (439)
177 2cjw_A GTP-binding protein GEM 99.4 1.2E-12 4.2E-17 129.4 9.1 115 794-922 6-127 (192)
178 3c5h_A Glucocorticoid receptor 99.4 7.8E-13 2.7E-17 137.6 8.0 134 788-922 13-211 (255)
179 2e87_A Hypothetical protein PH 99.3 4.9E-12 1.7E-16 138.1 13.5 115 792-922 165-293 (357)
180 1oix_A RAS-related protein RAB 99.3 2.8E-12 9.5E-17 126.5 9.4 115 794-922 29-147 (191)
181 2x2e_A Dynamin-1; nitration, h 99.3 5E-12 1.7E-16 137.8 11.9 132 791-922 28-210 (353)
182 1lnz_A SPO0B-associated GTP-bi 99.3 9.9E-13 3.4E-17 144.2 6.1 112 795-922 159-287 (342)
183 1pui_A ENGB, probable GTP-bind 99.3 4.8E-12 1.7E-16 124.9 10.3 113 793-922 25-150 (210)
184 2qtf_A Protein HFLX, GTP-bindi 99.3 9.1E-12 3.1E-16 137.5 11.3 110 796-922 181-305 (364)
185 2qag_A Septin-2, protein NEDD5 99.2 7.9E-12 2.7E-16 137.5 8.2 122 795-922 38-187 (361)
186 1wxq_A GTP-binding protein; st 99.2 2.4E-11 8.2E-16 135.7 10.5 99 795-893 1-114 (397)
187 3zvr_A Dynamin-1; hydrolase, D 99.2 1.4E-10 4.9E-15 139.0 14.5 132 791-922 48-230 (772)
188 2qag_C Septin-7; cell cycle, c 99.1 2.5E-10 8.5E-15 128.6 12.0 122 794-922 31-180 (418)
189 4a9a_A Ribosome-interacting GT 99.0 1.9E-10 6.4E-15 128.1 8.2 109 795-921 73-194 (376)
190 2wsm_A Hydrogenase expression/ 99.0 8.7E-11 3E-15 117.3 5.0 123 793-922 29-167 (221)
191 1yrb_A ATP(GTP)binding protein 99.0 9.4E-10 3.2E-14 112.8 10.0 65 857-922 109-184 (262)
192 1jal_A YCHF protein; nucleotid 99.0 1.4E-09 4.6E-14 120.7 11.5 97 795-892 3-108 (363)
193 3p32_A Probable GTPase RV1496/ 98.9 2.3E-10 7.9E-15 125.1 3.4 61 855-922 170-230 (355)
194 2www_A Methylmalonic aciduria 98.9 8.3E-10 2.9E-14 120.9 6.7 61 855-922 165-225 (349)
195 1udx_A The GTP-binding protein 98.9 2.7E-09 9.3E-14 120.1 10.1 111 795-922 158-282 (416)
196 2p67_A LAO/AO transport system 98.9 7.9E-10 2.7E-14 120.4 5.0 61 855-922 147-207 (341)
197 2dby_A GTP-binding protein; GD 98.9 3.4E-09 1.2E-13 117.6 9.2 97 795-892 2-111 (368)
198 2qnr_A Septin-2, protein NEDD5 98.8 3.1E-09 1.1E-13 114.1 7.5 123 794-922 18-168 (301)
199 1cip_A Protein (guanine nucleo 98.8 5.1E-09 1.8E-13 115.4 6.7 66 857-922 193-273 (353)
200 3sop_A Neuronal-specific septi 98.8 1.6E-08 5.5E-13 107.3 10.3 122 795-922 3-153 (270)
201 4fid_A G protein alpha subunit 98.8 7.1E-09 2.4E-13 114.1 7.4 68 855-922 159-241 (340)
202 2j37_W Signal recognition part 98.7 6.6E-09 2.3E-13 119.7 6.2 65 855-922 182-253 (504)
203 2qag_B Septin-6, protein NEDD5 98.7 2E-08 6.7E-13 113.6 9.6 115 797-922 45-189 (427)
204 3ec1_A YQEH GTPase; atnos1, at 98.7 1.4E-09 4.8E-14 120.0 0.2 110 794-922 162-287 (369)
205 2ohf_A Protein OLA1, GTP-bindi 98.7 1.5E-08 5.3E-13 113.5 5.8 99 794-892 22-128 (396)
206 3h2y_A GTPase family protein; 98.6 3.7E-09 1.3E-13 116.7 0.0 116 795-922 161-286 (368)
207 3ohm_A Guanine nucleotide-bind 98.6 3.5E-08 1.2E-12 108.1 6.9 66 857-922 167-247 (327)
208 2hf9_A Probable hydrogenase ni 98.5 6.9E-08 2.3E-12 96.6 6.5 123 793-922 37-177 (226)
209 2qm8_A GTPase/ATPase; G protei 98.5 7.4E-08 2.5E-12 105.2 5.9 61 855-922 146-206 (337)
210 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 8E-07 2.7E-11 99.5 9.2 98 794-892 20-127 (392)
211 3dm5_A SRP54, signal recogniti 98.3 6.9E-07 2.3E-11 101.6 8.8 65 856-922 182-252 (443)
212 2v3c_C SRP54, signal recogniti 98.3 6.7E-07 2.3E-11 101.1 8.7 65 855-922 179-251 (432)
213 1tq4_A IIGP1, interferon-induc 98.3 1.6E-06 5.5E-11 97.7 11.2 116 793-922 68-188 (413)
214 3szr_A Interferon-induced GTP- 98.2 2.8E-06 9.5E-11 99.7 11.0 67 856-922 146-227 (608)
215 1j8m_F SRP54, signal recogniti 98.2 1.8E-06 6.2E-11 92.9 7.7 65 855-922 179-252 (297)
216 1zcb_A G alpha I/13; GTP-bindi 98.1 1.8E-06 6.3E-11 95.4 6.6 66 857-922 201-281 (362)
217 3kl4_A SRP54, signal recogniti 98.1 1.6E-06 5.6E-11 98.2 6.0 64 856-921 179-250 (433)
218 2xxa_A Signal recognition part 98.1 4.7E-06 1.6E-10 94.3 8.3 63 856-921 183-252 (433)
219 1f5n_A Interferon-induced guan 98.0 3.3E-06 1.1E-10 99.1 6.1 100 793-904 37-144 (592)
220 1azs_C GS-alpha; complex (lyas 98.0 3.6E-06 1.2E-10 94.6 5.8 66 857-922 217-297 (402)
221 2xtz_A Guanine nucleotide-bind 98.0 3.6E-06 1.2E-10 92.9 4.6 66 857-922 183-263 (354)
222 1u0l_A Probable GTPase ENGC; p 97.9 1.1E-05 3.7E-10 86.5 6.1 63 858-922 64-128 (301)
223 1puj_A YLQF, conserved hypothe 97.8 1.4E-05 4.6E-10 85.4 6.0 27 793-819 119-145 (282)
224 2yhs_A FTSY, cell division pro 97.8 1.4E-05 4.6E-10 92.2 6.4 23 794-816 293-315 (503)
225 3e70_C DPA, signal recognition 97.8 1.6E-05 5.5E-10 86.8 5.5 63 857-921 212-280 (328)
226 1vma_A Cell division protein F 97.7 3.6E-05 1.2E-09 83.3 6.9 22 795-816 105-126 (306)
227 1zu4_A FTSY; GTPase, signal re 97.7 5.3E-05 1.8E-09 82.4 8.1 63 856-921 191-266 (320)
228 4dzz_A Plasmid partitioning pr 97.6 0.00013 4.5E-09 71.5 9.2 63 856-921 75-142 (206)
229 2ffh_A Protein (FFH); SRP54, s 97.6 6.6E-05 2.3E-09 85.0 7.7 64 855-921 179-249 (425)
230 3cnl_A YLQF, putative uncharac 97.6 3.4E-05 1.2E-09 81.4 4.8 25 795-819 100-124 (262)
231 2px0_A Flagellar biosynthesis 97.6 4.6E-05 1.6E-09 81.9 5.1 65 855-921 181-251 (296)
232 1rj9_A FTSY, signal recognitio 97.5 0.00013 4.4E-09 78.8 7.8 23 794-816 102-124 (304)
233 2ph1_A Nucleotide-binding prot 97.4 0.00094 3.2E-08 69.2 12.7 66 855-920 127-193 (262)
234 1ls1_A Signal recognition part 97.3 0.00015 5.2E-09 77.7 5.6 64 855-921 179-249 (295)
235 3l82_B F-box only protein 4; T 97.3 0.00032 1.1E-08 73.3 7.2 63 859-921 98-175 (227)
236 3q5d_A Atlastin-1; G protein, 97.3 0.00019 6.6E-09 81.7 6.1 27 791-817 64-90 (447)
237 3kjh_A CO dehydrogenase/acetyl 97.1 0.00072 2.5E-08 67.8 7.2 64 855-920 130-194 (254)
238 3b9q_A Chloroplast SRP recepto 97.1 0.00056 1.9E-08 73.8 6.3 22 795-816 101-122 (302)
239 2og2_A Putative signal recogni 97.0 0.00073 2.5E-08 74.9 6.6 22 795-816 158-179 (359)
240 2yv5_A YJEQ protein; hydrolase 97.0 0.00053 1.8E-08 73.6 5.0 56 867-922 66-123 (302)
241 3cwq_A Para family chromosome 97.0 0.00071 2.4E-08 68.2 5.7 64 856-921 67-132 (209)
242 3la6_A Tyrosine-protein kinase 96.9 0.0023 7.8E-08 68.3 9.7 64 857-921 202-266 (286)
243 3cio_A ETK, tyrosine-protein k 96.9 0.0021 7.1E-08 68.9 9.4 64 857-921 214-278 (299)
244 3end_A Light-independent proto 96.9 0.0027 9.1E-08 67.1 10.1 64 856-920 156-224 (307)
245 3bfv_A CAPA1, CAPB2, membrane 96.9 0.002 6.9E-08 68.0 8.4 64 857-921 192-256 (271)
246 1nij_A Hypothetical protein YJ 96.9 0.00061 2.1E-08 73.4 4.4 25 794-818 4-28 (318)
247 1puj_A YLQF, conserved hypothe 96.8 0.00095 3.3E-08 71.1 5.7 60 861-922 3-63 (282)
248 3k9g_A PF-32 protein; ssgcid, 96.7 0.0022 7.4E-08 66.2 6.6 63 856-920 144-208 (267)
249 3q9l_A Septum site-determining 96.7 0.0026 8.8E-08 64.7 7.0 63 856-920 113-184 (260)
250 2oze_A ORF delta'; para, walke 96.6 0.0039 1.3E-07 65.3 8.1 64 856-921 154-224 (298)
251 2i3b_A HCR-ntpase, human cance 96.6 0.002 7E-08 64.8 5.6 21 796-816 3-23 (189)
252 1wcv_1 SOJ, segregation protei 96.5 0.0028 9.6E-08 65.3 6.5 65 855-921 110-181 (257)
253 1hyq_A MIND, cell division inh 96.5 0.0029 9.8E-08 64.9 5.9 64 856-921 110-174 (263)
254 3l2o_B F-box only protein 4; s 96.4 0.0029 9.7E-08 69.0 6.0 57 865-921 195-260 (312)
255 1g3q_A MIND ATPase, cell divis 96.4 0.0047 1.6E-07 62.1 7.2 64 856-921 111-175 (237)
256 3ea0_A ATPase, para family; al 96.4 0.0045 1.5E-07 62.4 6.8 63 857-921 119-184 (245)
257 1np6_A Molybdopterin-guanine d 96.3 0.0069 2.4E-07 60.4 7.6 23 794-816 6-28 (174)
258 3ec1_A YQEH GTPase; atnos1, at 96.2 0.0015 5.3E-08 72.0 2.6 61 859-922 51-111 (369)
259 2b8t_A Thymidine kinase; deoxy 96.2 0.011 3.6E-07 61.5 8.5 118 792-920 10-127 (223)
260 2cvh_A DNA repair and recombin 96.2 0.011 3.6E-07 58.4 7.9 23 794-816 20-42 (220)
261 3h2y_A GTPase family protein; 96.1 0.0015 5.1E-08 72.1 1.7 61 859-922 49-109 (368)
262 3cnl_A YLQF, putative uncharac 96.0 0.0018 6.3E-08 68.2 1.8 55 864-922 4-59 (262)
263 2ehv_A Hypothetical protein PH 96.0 0.0025 8.5E-08 64.1 2.6 23 794-816 30-52 (251)
264 1bif_A 6-phosphofructo-2-kinas 96.0 0.0025 8.5E-08 72.2 2.9 108 794-916 39-156 (469)
265 3ec2_A DNA replication protein 95.9 0.0036 1.2E-07 60.7 3.3 23 794-816 38-60 (180)
266 4ido_A Atlastin-1; GTPase, GTP 95.9 0.0077 2.6E-07 68.9 6.2 23 793-815 66-88 (457)
267 2yv5_A YJEQ protein; hydrolase 95.8 0.01 3.5E-07 63.6 6.6 24 792-815 163-186 (302)
268 4a74_A DNA repair and recombin 95.8 0.011 3.9E-07 58.5 6.1 22 795-816 26-47 (231)
269 1t9h_A YLOQ, probable GTPase E 95.7 0.0039 1.3E-07 67.7 2.8 26 793-818 172-197 (307)
270 2kjq_A DNAA-related protein; s 95.7 0.031 1E-06 53.8 8.6 24 793-816 35-58 (149)
271 1jbk_A CLPB protein; beta barr 95.6 0.012 4E-07 55.5 5.3 22 795-816 44-65 (195)
272 1njg_A DNA polymerase III subu 95.6 0.035 1.2E-06 53.9 8.8 22 795-816 46-67 (250)
273 2orw_A Thymidine kinase; TMTK, 95.6 0.042 1.4E-06 54.7 9.3 39 882-920 76-114 (184)
274 2dr3_A UPF0273 protein PH0284; 95.5 0.013 4.3E-07 58.8 5.5 23 794-816 23-45 (247)
275 1cp2_A CP2, nitrogenase iron p 95.5 0.014 4.9E-07 59.9 5.8 66 856-921 115-186 (269)
276 4a1f_A DNAB helicase, replicat 95.4 0.0086 2.9E-07 65.9 4.0 23 794-816 46-68 (338)
277 1u0l_A Probable GTPase ENGC; p 95.3 0.013 4.4E-07 62.6 5.1 27 792-818 167-193 (301)
278 2chg_A Replication factor C sm 95.3 0.022 7.6E-07 54.9 6.2 21 796-816 40-60 (226)
279 2rcn_A Probable GTPase ENGC; Y 95.3 0.0089 3.1E-07 66.3 3.8 27 793-819 214-240 (358)
280 2afh_E Nitrogenase iron protei 95.3 0.013 4.5E-07 61.2 4.9 65 856-920 118-188 (289)
281 1xp8_A RECA protein, recombina 95.3 0.023 8E-07 62.9 7.1 23 794-816 74-96 (366)
282 2zr9_A Protein RECA, recombina 95.2 0.017 5.8E-07 63.4 5.7 23 794-816 61-83 (349)
283 3hr8_A Protein RECA; alpha and 95.1 0.023 7.7E-07 63.0 6.4 22 795-816 62-83 (356)
284 1sxj_E Activator 1 40 kDa subu 95.1 0.07 2.4E-06 56.7 9.9 20 797-816 39-58 (354)
285 3bh0_A DNAB-like replicative h 95.1 0.019 6.7E-07 61.6 5.6 22 795-816 69-90 (315)
286 3zvl_A Bifunctional polynucleo 95.1 0.065 2.2E-06 59.9 9.9 24 793-816 257-280 (416)
287 1cr0_A DNA primase/helicase; R 95.0 0.024 8.1E-07 59.5 6.0 24 794-817 35-58 (296)
288 1n0w_A DNA repair protein RAD5 95.0 0.03 1E-06 56.0 6.4 23 794-816 24-46 (243)
289 3bos_A Putative DNA replicatio 95.0 0.023 8E-07 56.1 5.5 23 794-816 52-74 (242)
290 1kgd_A CASK, peripheral plasma 94.9 0.015 5E-07 57.0 3.7 25 792-816 3-27 (180)
291 3pfi_A Holliday junction ATP-d 94.9 0.064 2.2E-06 56.9 8.9 21 796-816 57-77 (338)
292 1sxj_A Activator 1 95 kDa subu 94.6 0.084 2.9E-06 60.4 9.5 22 795-816 78-99 (516)
293 1u94_A RECA protein, recombina 94.6 0.027 9.3E-07 62.1 5.2 24 793-816 62-85 (356)
294 1fnn_A CDC6P, cell division co 94.6 0.016 5.6E-07 61.8 3.3 21 796-816 46-66 (389)
295 3lda_A DNA repair protein RAD5 94.5 0.03 1E-06 62.8 5.5 22 794-815 178-199 (400)
296 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.2 7E-06 54.3 11.8 23 795-817 172-194 (330)
297 1ye8_A Protein THEP1, hypothet 94.5 0.02 6.7E-07 56.8 3.4 21 796-816 2-22 (178)
298 3tr0_A Guanylate kinase, GMP k 94.4 0.023 7.7E-07 55.6 3.7 24 794-817 7-30 (205)
299 1z6g_A Guanylate kinase; struc 94.4 0.019 6.5E-07 58.3 3.1 24 794-817 23-46 (218)
300 1q57_A DNA primase/helicase; d 94.3 0.046 1.6E-06 62.2 6.3 23 794-816 242-264 (503)
301 1znw_A Guanylate kinase, GMP k 94.3 0.022 7.4E-07 56.9 3.2 24 794-817 20-43 (207)
302 2p65_A Hypothetical protein PF 94.2 0.033 1.1E-06 52.6 4.3 23 794-816 43-65 (187)
303 3jvv_A Twitching mobility prot 94.2 0.074 2.5E-06 58.7 7.5 23 794-816 123-145 (356)
304 3ney_A 55 kDa erythrocyte memb 94.1 0.029 9.9E-07 57.3 3.9 28 790-817 15-42 (197)
305 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.038 1.3E-06 57.4 4.9 22 795-816 5-26 (260)
306 1lvg_A Guanylate kinase, GMP k 94.1 0.022 7.4E-07 56.9 2.8 21 796-816 6-26 (198)
307 3a00_A Guanylate kinase, GMP k 94.1 0.024 8.1E-07 55.6 3.0 21 796-816 3-23 (186)
308 3te6_A Regulatory protein SIR3 94.0 0.061 2.1E-06 58.7 6.3 26 791-816 42-67 (318)
309 2v1u_A Cell division control p 94.0 0.076 2.6E-06 56.3 6.9 22 795-816 45-66 (387)
310 1xx6_A Thymidine kinase; NESG, 94.0 0.14 4.8E-06 51.7 8.4 36 885-920 84-119 (191)
311 2z43_A DNA repair and recombin 93.9 0.052 1.8E-06 58.4 5.6 23 794-816 107-129 (324)
312 1zp6_A Hypothetical protein AT 93.9 0.03 1E-06 54.3 3.3 23 795-817 10-32 (191)
313 1v5w_A DMC1, meiotic recombina 93.8 0.098 3.3E-06 56.9 7.5 22 795-816 123-144 (343)
314 1jr3_A DNA polymerase III subu 93.8 0.16 5.5E-06 54.0 9.0 22 795-816 39-60 (373)
315 3e2i_A Thymidine kinase; Zn-bi 93.7 0.067 2.3E-06 55.8 5.7 38 883-920 102-139 (219)
316 1hqc_A RUVB; extended AAA-ATPa 93.7 0.14 4.9E-06 53.5 8.3 21 796-816 40-60 (324)
317 2j41_A Guanylate kinase; GMP, 93.7 0.039 1.3E-06 53.9 3.7 25 794-818 6-30 (207)
318 3lw7_A Adenylate kinase relate 93.7 0.037 1.3E-06 51.7 3.4 20 795-814 2-21 (179)
319 3bgw_A DNAB-like replicative h 93.6 0.067 2.3E-06 60.5 5.9 23 794-816 197-219 (444)
320 1c9k_A COBU, adenosylcobinamid 93.6 0.079 2.7E-06 53.5 5.8 21 797-817 2-22 (180)
321 3c8u_A Fructokinase; YP_612366 93.6 0.032 1.1E-06 55.7 2.9 23 794-816 22-44 (208)
322 3io5_A Recombination and repai 93.6 0.13 4.6E-06 56.6 8.0 22 795-816 29-50 (333)
323 4fcw_A Chaperone protein CLPB; 93.6 0.11 3.9E-06 54.0 7.1 21 796-816 49-69 (311)
324 2q6t_A DNAB replication FORK h 93.5 0.048 1.6E-06 61.3 4.6 23 794-816 200-222 (444)
325 2r6a_A DNAB helicase, replicat 93.5 0.063 2.2E-06 60.4 5.6 23 794-816 203-225 (454)
326 3tau_A Guanylate kinase, GMP k 93.5 0.042 1.5E-06 55.0 3.6 24 794-817 8-31 (208)
327 3tif_A Uncharacterized ABC tra 93.4 0.039 1.3E-06 57.0 3.2 26 793-818 30-55 (235)
328 1kht_A Adenylate kinase; phosp 93.3 0.049 1.7E-06 52.3 3.7 23 794-816 3-25 (192)
329 4gp7_A Metallophosphoesterase; 93.3 0.041 1.4E-06 53.5 3.1 21 795-815 10-30 (171)
330 3sr0_A Adenylate kinase; phosp 93.3 0.067 2.3E-06 54.5 4.8 22 795-816 1-22 (206)
331 1s96_A Guanylate kinase, GMP k 93.3 0.041 1.4E-06 56.4 3.2 24 794-817 16-39 (219)
332 3asz_A Uridine kinase; cytidin 93.2 0.041 1.4E-06 54.4 3.0 23 794-816 6-28 (211)
333 1t9h_A YLOQ, probable GTPase E 93.2 0.088 3E-06 57.1 5.7 49 874-922 80-130 (307)
334 2i1q_A DNA repair and recombin 93.1 0.083 2.8E-06 56.3 5.4 22 795-816 99-120 (322)
335 3pxg_A Negative regulator of g 93.1 0.084 2.9E-06 59.8 5.8 23 794-816 201-223 (468)
336 2pcj_A ABC transporter, lipopr 93.1 0.043 1.5E-06 56.3 3.1 25 794-818 30-54 (224)
337 1knq_A Gluconate kinase; ALFA/ 93.1 0.052 1.8E-06 52.1 3.4 24 793-816 7-30 (175)
338 3n70_A Transport activator; si 93.0 0.13 4.5E-06 48.5 6.0 21 796-816 26-46 (145)
339 1kag_A SKI, shikimate kinase I 93.0 0.048 1.6E-06 51.9 3.1 22 795-816 5-26 (173)
340 1htw_A HI0065; nucleotide-bind 93.0 0.051 1.7E-06 53.2 3.2 24 795-818 34-57 (158)
341 3of5_A Dethiobiotin synthetase 93.0 0.17 5.7E-06 52.3 7.2 65 856-920 110-180 (228)
342 1w4r_A Thymidine kinase; type 92.9 0.12 4.1E-06 53.0 5.9 39 879-920 90-128 (195)
343 1b0u_A Histidine permease; ABC 92.9 0.05 1.7E-06 57.2 3.3 26 793-818 31-56 (262)
344 2qor_A Guanylate kinase; phosp 92.9 0.055 1.9E-06 53.7 3.4 23 794-816 12-34 (204)
345 2onk_A Molybdate/tungstate ABC 92.9 0.055 1.9E-06 56.3 3.5 24 795-818 25-48 (240)
346 1qhx_A CPT, protein (chloramph 92.9 0.069 2.3E-06 51.1 3.9 23 794-816 3-25 (178)
347 2j9r_A Thymidine kinase; TK1, 92.9 0.22 7.4E-06 51.7 7.9 38 883-920 102-139 (214)
348 1g6h_A High-affinity branched- 92.8 0.052 1.8E-06 56.8 3.2 25 794-818 33-57 (257)
349 3syl_A Protein CBBX; photosynt 92.8 0.12 4E-06 54.0 5.8 23 794-816 67-89 (309)
350 4eun_A Thermoresistant glucoki 92.7 0.063 2.2E-06 53.1 3.6 23 794-816 29-51 (200)
351 3ug7_A Arsenical pump-driving 92.7 0.13 4.5E-06 56.1 6.4 41 881-921 237-278 (349)
352 2plr_A DTMP kinase, probable t 92.7 0.064 2.2E-06 52.3 3.6 24 793-816 3-26 (213)
353 2bdt_A BH3686; alpha-beta prot 92.7 0.057 2E-06 52.5 3.2 21 796-816 4-24 (189)
354 2cbz_A Multidrug resistance-as 92.7 0.055 1.9E-06 56.0 3.2 26 793-818 30-55 (237)
355 1mv5_A LMRA, multidrug resista 92.7 0.058 2E-06 55.9 3.3 24 794-817 28-51 (243)
356 3kb2_A SPBC2 prophage-derived 92.7 0.066 2.3E-06 50.5 3.4 21 796-816 3-23 (173)
357 2pze_A Cystic fibrosis transme 92.6 0.059 2E-06 55.4 3.3 26 793-818 33-58 (229)
358 1tev_A UMP-CMP kinase; ploop, 92.6 0.063 2.2E-06 51.6 3.3 24 793-816 2-25 (196)
359 1tf7_A KAIC; homohexamer, hexa 92.6 0.064 2.2E-06 61.5 3.9 24 794-817 281-304 (525)
360 2ff7_A Alpha-hemolysin translo 92.6 0.059 2E-06 56.2 3.2 25 794-818 35-59 (247)
361 2bbw_A Adenylate kinase 4, AK4 92.6 0.074 2.5E-06 54.3 3.9 22 794-815 27-48 (246)
362 1ji0_A ABC transporter; ATP bi 92.5 0.06 2.1E-06 55.8 3.2 25 794-818 32-56 (240)
363 3gfo_A Cobalt import ATP-bindi 92.5 0.06 2.1E-06 57.3 3.3 24 794-817 34-57 (275)
364 3b85_A Phosphate starvation-in 92.5 0.051 1.7E-06 55.4 2.6 24 794-817 22-45 (208)
365 2d2e_A SUFC protein; ABC-ATPas 92.4 0.067 2.3E-06 55.7 3.5 25 793-817 28-52 (250)
366 2zu0_C Probable ATP-dependent 92.4 0.069 2.4E-06 56.3 3.5 25 793-817 45-69 (267)
367 4g1u_C Hemin import ATP-bindin 92.4 0.065 2.2E-06 56.6 3.3 25 794-818 37-61 (266)
368 2eyu_A Twitching motility prot 92.3 0.064 2.2E-06 56.4 3.2 24 793-816 24-47 (261)
369 2olj_A Amino acid ABC transpor 92.3 0.067 2.3E-06 56.5 3.3 26 793-818 49-74 (263)
370 2ghi_A Transport protein; mult 92.3 0.066 2.3E-06 56.2 3.2 25 793-817 45-69 (260)
371 2ixe_A Antigen peptide transpo 92.3 0.066 2.3E-06 56.6 3.2 26 793-818 44-69 (271)
372 2qby_A CDC6 homolog 1, cell di 92.3 0.033 1.1E-06 59.0 0.9 22 795-816 46-67 (386)
373 1sgw_A Putative ABC transporte 92.3 0.061 2.1E-06 55.2 2.9 25 794-818 35-59 (214)
374 3iij_A Coilin-interacting nucl 92.3 0.082 2.8E-06 51.0 3.6 24 792-815 9-32 (180)
375 1y63_A LMAJ004144AAA protein; 92.2 0.089 3E-06 51.5 3.9 26 792-817 8-33 (184)
376 1vpl_A ABC transporter, ATP-bi 92.2 0.069 2.4E-06 56.1 3.3 26 793-818 40-65 (256)
377 3fkq_A NTRC-like two-domain pr 92.2 0.063 2.1E-06 58.9 3.1 36 855-892 258-293 (373)
378 3zq6_A Putative arsenical pump 92.2 0.13 4.5E-06 55.3 5.5 39 882-920 223-262 (324)
379 1sxj_D Activator 1 41 kDa subu 92.2 0.076 2.6E-06 56.1 3.6 21 796-816 60-80 (353)
380 3lnc_A Guanylate kinase, GMP k 92.2 0.057 1.9E-06 54.6 2.5 24 794-817 27-51 (231)
381 2ihy_A ABC transporter, ATP-bi 92.2 0.07 2.4E-06 56.8 3.3 26 793-818 46-71 (279)
382 2qi9_C Vitamin B12 import ATP- 92.2 0.072 2.5E-06 55.8 3.3 25 793-817 25-49 (249)
383 3u61_B DNA polymerase accessor 92.1 0.29 1E-05 51.6 8.0 21 796-816 50-70 (324)
384 2vhj_A Ntpase P4, P4; non- hyd 92.1 0.23 7.7E-06 54.8 7.2 22 795-816 124-145 (331)
385 1pzn_A RAD51, DNA repair and r 92.1 0.15 5.1E-06 55.8 5.8 24 794-817 131-154 (349)
386 3h4m_A Proteasome-activating n 92.0 0.069 2.4E-06 55.1 3.0 22 795-816 52-73 (285)
387 1cke_A CK, MSSA, protein (cyti 92.0 0.085 2.9E-06 52.5 3.5 22 795-816 6-27 (227)
388 2yz2_A Putative ABC transporte 92.0 0.076 2.6E-06 55.9 3.2 26 793-818 32-57 (266)
389 1iqp_A RFCS; clamp loader, ext 91.9 0.23 7.9E-06 51.6 6.8 22 795-816 47-68 (327)
390 2jaq_A Deoxyguanosine kinase; 91.9 0.093 3.2E-06 50.9 3.5 21 796-816 2-22 (205)
391 2v54_A DTMP kinase, thymidylat 91.9 0.11 3.6E-06 50.8 3.9 25 793-817 3-27 (204)
392 2if2_A Dephospho-COA kinase; a 91.8 0.084 2.9E-06 51.8 3.2 22 795-816 2-23 (204)
393 2nq2_C Hypothetical ABC transp 91.8 0.082 2.8E-06 55.4 3.2 25 794-818 31-55 (253)
394 1d2n_A N-ethylmaleimide-sensit 91.8 0.29 9.8E-06 50.5 7.3 22 795-816 65-86 (272)
395 1ly1_A Polynucleotide kinase; 91.8 0.097 3.3E-06 49.7 3.4 21 796-816 4-24 (181)
396 3vfd_A Spastin; ATPase, microt 91.7 0.21 7.1E-06 54.7 6.4 22 795-816 149-170 (389)
397 2cdn_A Adenylate kinase; phosp 91.6 0.12 4.2E-06 50.8 4.1 27 790-816 16-42 (201)
398 1jjv_A Dephospho-COA kinase; P 91.5 0.094 3.2E-06 51.7 3.2 22 795-816 3-24 (206)
399 1nks_A Adenylate kinase; therm 91.5 0.092 3.1E-06 50.3 3.0 21 796-816 3-23 (194)
400 3t61_A Gluconokinase; PSI-biol 91.5 0.088 3E-06 51.9 2.9 22 795-816 19-40 (202)
401 3aez_A Pantothenate kinase; tr 91.5 0.091 3.1E-06 56.8 3.2 24 793-816 89-112 (312)
402 3pvs_A Replication-associated 91.5 0.34 1.2E-05 54.9 8.0 22 795-816 51-72 (447)
403 2zts_A Putative uncharacterize 91.4 0.069 2.4E-06 53.4 2.1 23 794-816 30-52 (251)
404 2bjv_A PSP operon transcriptio 91.4 0.32 1.1E-05 49.9 7.0 22 796-817 31-52 (265)
405 3cm0_A Adenylate kinase; ATP-b 91.3 0.096 3.3E-06 50.4 2.9 22 795-816 5-26 (186)
406 2jeo_A Uridine-cytidine kinase 91.3 0.1 3.5E-06 53.4 3.3 23 794-816 25-47 (245)
407 1ex7_A Guanylate kinase; subst 91.3 0.11 3.8E-06 52.3 3.5 20 797-816 4-23 (186)
408 1tf7_A KAIC; homohexamer, hexa 91.3 0.21 7.1E-06 57.3 6.1 21 794-814 39-59 (525)
409 2pjz_A Hypothetical protein ST 91.2 0.1 3.5E-06 55.1 3.3 25 794-818 30-54 (263)
410 1sxj_C Activator 1 40 kDa subu 91.2 0.11 3.7E-06 55.7 3.5 21 796-816 48-68 (340)
411 2rhm_A Putative kinase; P-loop 91.2 0.11 3.9E-06 50.0 3.3 22 795-816 6-27 (193)
412 3uie_A Adenylyl-sulfate kinase 91.2 0.11 3.6E-06 51.5 3.2 23 794-816 25-47 (200)
413 2wwf_A Thymidilate kinase, put 91.2 0.12 4.2E-06 50.6 3.6 24 793-816 9-32 (212)
414 1nn5_A Similar to deoxythymidy 91.2 0.13 4.4E-06 50.5 3.7 24 793-816 8-31 (215)
415 3fvq_A Fe(3+) IONS import ATP- 91.2 0.1 3.5E-06 57.9 3.3 25 794-818 30-54 (359)
416 2c95_A Adenylate kinase 1; tra 91.1 0.13 4.5E-06 49.7 3.7 23 794-816 9-31 (196)
417 2v9p_A Replication protein E1; 91.1 0.1 3.5E-06 56.6 3.1 23 794-816 126-148 (305)
418 2qt1_A Nicotinamide riboside k 91.1 0.13 4.4E-06 50.8 3.7 24 794-817 21-44 (207)
419 3fwy_A Light-independent proto 91.1 0.31 1.1E-05 52.7 6.9 35 856-891 163-197 (314)
420 1z47_A CYSA, putative ABC-tran 91.0 0.12 3.9E-06 57.3 3.5 25 794-818 41-65 (355)
421 2bbs_A Cystic fibrosis transme 91.0 0.11 3.6E-06 55.8 3.1 26 793-818 63-88 (290)
422 2it1_A 362AA long hypothetical 90.9 0.12 4.1E-06 57.3 3.5 26 793-818 28-53 (362)
423 2yyz_A Sugar ABC transporter, 90.9 0.12 4E-06 57.3 3.5 25 794-818 29-53 (359)
424 1g29_1 MALK, maltose transport 90.8 0.12 4.1E-06 57.4 3.5 25 794-818 29-53 (372)
425 3vaa_A Shikimate kinase, SK; s 90.8 0.15 5.1E-06 50.4 3.8 22 795-816 26-47 (199)
426 2qp9_X Vacuolar protein sortin 90.8 0.12 4.2E-06 56.2 3.5 21 796-816 86-106 (355)
427 3fb4_A Adenylate kinase; psych 90.8 0.14 4.6E-06 50.8 3.5 20 796-815 2-21 (216)
428 2vli_A Antibiotic resistance p 90.8 0.1 3.5E-06 50.0 2.5 23 793-815 4-26 (183)
429 2yvu_A Probable adenylyl-sulfa 90.8 0.15 5E-06 49.6 3.7 25 792-816 11-35 (186)
430 3kta_A Chromosome segregation 90.7 0.15 5E-06 49.2 3.6 24 793-816 25-48 (182)
431 1sxj_B Activator 1 37 kDa subu 90.7 0.39 1.3E-05 49.8 7.0 21 796-816 44-64 (323)
432 1rz3_A Hypothetical protein rb 90.7 0.12 4.1E-06 51.3 3.0 23 794-816 22-44 (201)
433 1v43_A Sugar-binding transport 90.7 0.13 4.3E-06 57.3 3.5 25 794-818 37-61 (372)
434 3rlf_A Maltose/maltodextrin im 90.7 0.13 4.4E-06 57.6 3.5 25 794-818 29-53 (381)
435 3be4_A Adenylate kinase; malar 90.7 0.14 4.8E-06 51.4 3.5 25 792-816 3-27 (217)
436 3trf_A Shikimate kinase, SK; a 90.6 0.15 5.1E-06 49.2 3.5 21 795-815 6-26 (185)
437 2r8r_A Sensor protein; KDPD, P 90.5 0.29 9.9E-06 51.3 5.8 21 795-815 7-27 (228)
438 1qvr_A CLPB protein; coiled co 90.5 0.39 1.3E-05 58.3 7.8 98 793-917 190-307 (854)
439 3tui_C Methionine import ATP-b 90.5 0.14 4.7E-06 57.1 3.5 27 792-818 52-78 (366)
440 1sq5_A Pantothenate kinase; P- 90.4 0.13 4.3E-06 55.1 3.1 24 793-816 79-102 (308)
441 4b4t_L 26S protease subunit RP 90.4 0.38 1.3E-05 54.7 7.1 20 797-816 218-237 (437)
442 3qxc_A Dethiobiotin synthetase 90.4 0.59 2E-05 48.9 8.1 65 856-920 131-200 (242)
443 3nh6_A ATP-binding cassette SU 90.4 0.096 3.3E-06 56.7 2.1 24 794-817 80-103 (306)
444 1a5t_A Delta prime, HOLB; zinc 90.4 0.53 1.8E-05 50.6 7.9 22 795-816 25-46 (334)
445 1aky_A Adenylate kinase; ATP:A 90.4 0.17 5.9E-06 50.5 3.8 23 794-816 4-26 (220)
446 3dl0_A Adenylate kinase; phosp 90.4 0.16 5.3E-06 50.5 3.5 21 796-816 2-22 (216)
447 2f1r_A Molybdopterin-guanine d 90.3 0.08 2.8E-06 52.5 1.3 22 795-816 3-24 (171)
448 1uf9_A TT1252 protein; P-loop, 90.3 0.16 5.4E-06 49.4 3.4 25 793-817 7-31 (203)
449 2chq_A Replication factor C sm 90.3 0.16 5.4E-06 52.6 3.6 21 796-816 40-60 (319)
450 3upu_A ATP-dependent DNA helic 90.2 0.16 5.4E-06 57.2 3.8 21 796-816 47-67 (459)
451 4e22_A Cytidylate kinase; P-lo 90.2 0.17 5.8E-06 52.3 3.8 23 793-815 26-48 (252)
452 2pez_A Bifunctional 3'-phospho 90.2 0.16 5.3E-06 49.1 3.2 24 793-816 4-27 (179)
453 2w0m_A SSO2452; RECA, SSPF, un 90.2 0.15 5.1E-06 50.1 3.2 22 795-816 24-45 (235)
454 3d31_A Sulfate/molybdate ABC t 90.2 0.11 3.8E-06 57.2 2.4 25 794-818 26-50 (348)
455 1ihu_A Arsenical pump-driving 90.2 0.34 1.1E-05 56.2 6.6 39 882-920 199-238 (589)
456 3e1s_A Exodeoxyribonuclease V, 90.2 0.15 5E-06 59.7 3.5 23 794-816 204-226 (574)
457 2gza_A Type IV secretion syste 90.1 0.13 4.3E-06 56.6 2.8 23 795-817 176-198 (361)
458 1zd8_A GTP:AMP phosphotransfer 90.1 0.17 5.8E-06 50.9 3.5 23 794-816 7-29 (227)
459 2pbr_A DTMP kinase, thymidylat 90.0 0.18 6.1E-06 48.5 3.5 21 796-816 2-22 (195)
460 3pxi_A Negative regulator of g 90.0 0.27 9.3E-06 58.7 5.8 23 794-816 201-223 (758)
461 3tqc_A Pantothenate kinase; bi 90.0 0.15 5.1E-06 55.7 3.2 24 793-816 91-114 (321)
462 3gd7_A Fusion complex of cysti 90.0 0.15 5.1E-06 57.1 3.3 25 793-817 46-70 (390)
463 3co5_A Putative two-component 89.8 0.18 6E-06 47.6 3.2 20 797-816 30-49 (143)
464 1ojl_A Transcriptional regulat 89.8 0.51 1.8E-05 50.3 7.2 21 796-816 27-47 (304)
465 2ewv_A Twitching motility prot 89.8 0.15 5.2E-06 56.2 3.1 23 794-816 136-158 (372)
466 1xjc_A MOBB protein homolog; s 89.7 0.2 7E-06 49.9 3.7 23 794-816 4-26 (169)
467 2pt5_A Shikimate kinase, SK; a 89.7 0.19 6.6E-06 47.5 3.4 21 796-816 2-22 (168)
468 1ixz_A ATP-dependent metallopr 89.7 0.16 5.5E-06 51.8 3.0 20 797-816 52-71 (254)
469 1lw7_A Transcriptional regulat 89.6 0.14 4.9E-06 55.7 2.8 23 795-817 171-193 (365)
470 1vht_A Dephospho-COA kinase; s 89.6 0.18 6.2E-06 50.2 3.3 23 794-816 4-26 (218)
471 2z0h_A DTMP kinase, thymidylat 89.6 0.2 6.8E-06 48.4 3.5 21 796-816 2-22 (197)
472 3cmw_A Protein RECA, recombina 89.6 0.25 8.6E-06 64.5 5.3 23 794-816 732-754 (1706)
473 3fgn_A Dethiobiotin synthetase 89.6 0.44 1.5E-05 50.1 6.3 64 856-919 126-196 (251)
474 2bwj_A Adenylate kinase 5; pho 89.6 0.19 6.6E-06 48.6 3.4 22 795-816 13-34 (199)
475 1oxx_K GLCV, glucose, ABC tran 89.6 0.11 3.6E-06 57.4 1.7 25 794-818 31-55 (353)
476 2zan_A Vacuolar protein sortin 89.5 0.75 2.6E-05 51.7 8.6 22 795-816 168-189 (444)
477 1zak_A Adenylate kinase; ATP:A 89.5 0.18 6E-06 50.5 3.1 22 795-816 6-27 (222)
478 1ukz_A Uridylate kinase; trans 89.4 0.2 6.9E-06 49.1 3.4 22 795-816 16-37 (203)
479 1gtv_A TMK, thymidylate kinase 89.4 0.1 3.4E-06 51.3 1.2 21 796-816 2-22 (214)
480 1p9r_A General secretion pathw 89.4 0.17 5.8E-06 57.0 3.2 24 793-816 166-189 (418)
481 1xwi_A SKD1 protein; VPS4B, AA 89.3 0.58 2E-05 50.2 7.2 22 795-816 46-67 (322)
482 1odf_A YGR205W, hypothetical 3 89.3 0.19 6.4E-06 53.8 3.3 24 793-816 30-53 (290)
483 1qf9_A UMP/CMP kinase, protein 89.3 0.22 7.5E-06 47.6 3.5 22 795-816 7-28 (194)
484 1byi_A Dethiobiotin synthase; 89.3 0.47 1.6E-05 47.1 6.0 66 856-921 108-179 (224)
485 2vp4_A Deoxynucleoside kinase; 89.1 0.16 5.3E-06 51.7 2.4 25 793-817 19-43 (230)
486 1e4v_A Adenylate kinase; trans 89.1 0.21 7.3E-06 49.7 3.3 21 796-816 2-22 (214)
487 2x8a_A Nuclear valosin-contain 89.0 0.18 6.2E-06 53.1 2.9 20 797-816 47-66 (274)
488 2oap_1 GSPE-2, type II secreti 89.0 0.16 5.6E-06 58.5 2.8 22 796-817 262-283 (511)
489 2iyv_A Shikimate kinase, SK; t 89.0 0.19 6.5E-06 48.5 2.8 22 795-816 3-24 (184)
490 3cmw_A Protein RECA, recombina 88.9 0.38 1.3E-05 62.9 6.2 24 793-816 382-405 (1706)
491 1via_A Shikimate kinase; struc 88.8 0.22 7.5E-06 47.8 3.1 21 796-816 6-26 (175)
492 2xj4_A MIPZ; replication, cell 88.7 0.1 3.5E-06 54.7 0.8 33 857-891 104-136 (286)
493 1e6c_A Shikimate kinase; phosp 88.7 0.22 7.4E-06 47.2 3.0 21 796-816 4-24 (173)
494 1r6b_X CLPA protein; AAA+, N-t 88.5 0.81 2.8E-05 54.5 8.3 23 794-816 207-229 (758)
495 2npi_A Protein CLP1; CLP1-PCF1 88.5 0.2 6.9E-06 57.1 3.0 26 793-818 137-162 (460)
496 3tlx_A Adenylate kinase 2; str 88.4 0.25 8.7E-06 50.8 3.4 24 793-816 28-51 (243)
497 1iy2_A ATP-dependent metallopr 88.4 0.22 7.5E-06 51.7 3.0 20 797-816 76-95 (278)
498 2woo_A ATPase GET3; tail-ancho 88.3 0.61 2.1E-05 50.3 6.5 39 882-920 222-261 (329)
499 3cmu_A Protein RECA, recombina 88.3 0.42 1.4E-05 63.3 6.1 24 793-816 382-405 (2050)
500 1gvn_B Zeta; postsegregational 88.3 0.26 8.7E-06 52.4 3.4 24 793-816 32-55 (287)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=4.4e-19 Score=207.15 Aligned_cols=132 Identities=53% Similarity=0.841 Sum_probs=106.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeecc--ccccCCCCEEEEeCCCCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~--~~~~k~~~L~IIDTPGhE 868 (923)
++|.++|+||||+++|||||+++|++..+.....+++|++++..+++..........+.. ...+..+.|+|||||||.
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 468899999999999999999999988877777778999999888765432111111100 122344579999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++.++++.||++|||||+++++.++++++|.++...++|+|||+||||+.
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 999999999999999999999999999999999999999999999999999985
No 2
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=4e-18 Score=162.81 Aligned_cols=115 Identities=50% Similarity=0.759 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.....++++..+....+. +....+.||||||+..|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVT----------------VNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEE----------------ETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEE----------------eCCceEEEEECCCCHHHH
Confidence 3567899999999999999999998777654444444333221111 112348899999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...+.+..+..+...++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 998899999999999999999888888888888888899999999999985
No 3
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.73 E-value=2.3e-18 Score=197.57 Aligned_cols=115 Identities=48% Similarity=0.728 Sum_probs=101.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.|.++|+|+||+++|||||+++|++..+..++.+|+|+.++..++.+. ...|+|||||||..|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~----------------~~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE----------------NGMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT----------------SSCCCEECCCTTTCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC----------------CEEEEEEECCCcHHHH
Confidence 367889999999999999999999888877777888888766444321 2348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++.++++.||++|||||+++++.++++++|.++...++|+|||+||||+.
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred HHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 999999999999999999999999999999999998999999999999984
No 4
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=6.6e-18 Score=195.25 Aligned_cols=115 Identities=45% Similarity=0.671 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
|.|+|+||||+++||||||++|++..+.....+++|..++...+.... ...|+|||||||+.|..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC---------------CCEEEEEECCChHHHHH
Confidence 678899999999999999999998888777778888877665443211 12488999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.++++.+|++|||||++++..+++.++|.++...++|+|||+||||+.
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999984
No 5
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=1.4e-16 Score=155.19 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
+.....++|+|||++|+||||||++|++..+.... +.++++..+... ......|.||||||++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~--------------~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETF--------------EKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEE--------------EETTEEEEEEEECCSG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEE--------------EeCCEEEEEEECCCCH
Confidence 34556678999999999999999999987765310 122232211111 1122459999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc-----------CCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR-----------NTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~-----------~iP~IVVLNKIDLL 922 (923)
.|..++..++..+|+||||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 9999999999999999999999986443333 344444333 89999999999985
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=7e-17 Score=183.99 Aligned_cols=118 Identities=28% Similarity=0.423 Sum_probs=91.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc-------cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEE
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~Llgtn-------Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~I 861 (923)
...|+.++|+|+||+++|||||+++|++.. +.....+|+|..++..++.. ....|+|
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----------------~~~~i~i 77 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL----------------ENYRITL 77 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE----------------TTEEEEE
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE----------------CCEEEEE
Confidence 345677889999999999999999999765 22233344555444333322 1234999
Q ss_pred EeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 862 IDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
||||||..|...+..+++.+|++|||||+++++.+++.+++.++...++|+|||+||||++
T Consensus 78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.67 E-value=3.2e-16 Score=146.86 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=79.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
++|+|+|++|+|||||+++|++..+.. ....+++..+.... ..+....+.||||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGV----------------VETDRGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEE----------------EEETTEEEEEEECGGGCSSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEE----------------EEeCCceEEEEECCCCCCccch
Confidence 469999999999999999999865431 11111111110000 011122489999999876
Q ss_pred ---hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ---f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+...+..++..+|++|||||+++++......++..+...++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 44556678899999999999999887777667777777799999999999984
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=8.1e-17 Score=186.43 Aligned_cols=128 Identities=26% Similarity=0.371 Sum_probs=91.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceee-----cceeeecccccccceeeecc-----ccccCCCC
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-----IGATYFPAENIRERTRELKA-----NATLKVPG 858 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~q-----Igat~~p~e~i~ekt~~I~~-----~~~~k~~~ 858 (923)
...+|| |+||||+++|||||+.+||...-.....+.+... ....+.+.+ +-++|+. ...|..+.
T Consensus 28 ~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~E----reRGITI~s~~~~~~~~~~~ 101 (548)
T 3vqt_A 28 AARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAME----RERGISVTTSVMQFPYRDRV 101 (548)
T ss_dssp HHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC------------------------CTTTEEEEEETTEE
T ss_pred ccccce--EEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHH----HHCCCcEeeceEEEEECCEE
Confidence 456777 9999999999999999998522110000111100 001122221 2222222 13455567
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|+|||||||.+|...+.+.++.||++|||||+..|+..||..+|+++..+++|+|+++||||+.
T Consensus 102 iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 102 VNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp EEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.66 E-value=3.5e-16 Score=168.05 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=86.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.+|++.|+|+|++|+|||||+|+|++..+.. ...+++|. ..+..+. ......|+||||||+..
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-------------~~i~~i~---~~~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-------------KRLRGIL---TEGRRQIVFVDTPGLHK 67 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-------------SCEEEEE---EETTEEEEEEECCCCCC
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-------------EEEEEEE---EeCCcEEEEecCccccc
Confidence 4778889999999999999999999877642 11111111 1111111 11234599999999876
Q ss_pred --------hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 870 --------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 870 --------f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
|...+..++..+|+||||||+++++......++..+... ++|+|||+||+|+.
T Consensus 68 ~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 68 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 556667889999999999999998888877777778777 89999999999985
No 10
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=2.1e-16 Score=151.29 Aligned_cols=118 Identities=18% Similarity=0.145 Sum_probs=81.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....|.||||||+..|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN--------------DATVKFEIWDTAGQERY 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET--------------TEEEEEEEEECCCSGGG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC--------------CEEEEEEEEeCCCChhh
Confidence 3455779999999999999999999876653322222211111111000 01124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..+++.+|++|||||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 9999999999999999999987443222 233444433 378999999999984
No 11
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=2.3e-16 Score=148.46 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+..... +.++..+...... + ......+.||||||+..|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~------~----~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKE----PTIGAAFLTQRVT------I----NEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----CCSSEEEEEEEEE------E----TTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEE------E----CCEEEEEEEEECCCChhhhh
Confidence 45679999999999999999999876543222 2222211111000 0 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++....... .++..+. ..++|+|||+||+|++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 999999999999999999874333222 2233332 2478999999999984
No 12
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.65 E-value=6.2e-17 Score=192.17 Aligned_cols=130 Identities=26% Similarity=0.235 Sum_probs=90.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc-----c-------ccCC
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN-----A-------TLKV 856 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~-----~-------~~k~ 856 (923)
.+++|| ||||||+++|||||+.+|+...-.....+.+. -+.++..+. ..++.++|+.. + .+..
T Consensus 10 ~~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~--~~~~~~D~~-~~E~eRGITI~s~~~s~~~~~~~~~~~~ 84 (709)
T 4fn5_A 10 INRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVH--DGAATTDWM-VQEQERGITITSAAVTTFWKGSRGQYDN 84 (709)
T ss_dssp GGGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCC
T ss_pred hHHCeE--EEEEcCCCCCHHHHHHHHHHhcCCCCcCceec--CCCccCCCh-HHHHHcCCeEEeeeEEEEeccCcCCCCC
Confidence 468888 99999999999999999984221100000000 011111111 01112222211 1 1123
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcCC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFSF 923 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL~ 923 (923)
+.|+|||||||.+|.....+.++.||++|+|||+..|+..||..+|+++...++|+|+|+||||+.+
T Consensus 85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 5699999999999999999999999999999999999999999999999999999999999999863
No 13
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.65 E-value=3.2e-16 Score=150.96 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=80.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.+++.++|+|+|++|+|||||+++|++..+.....+.+ +..+....... .....|.||||||+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~----~~~~~~~~~~~-----------~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI----EDSYLKHTEID-----------NQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC----CEEEEEEEEET-----------TEEEEEEEEECCSCGG
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc----cceeEEEEEeC-----------CcEEEEEEEECCCchh
Confidence 45667789999999999999999999765543322221 11111110000 0112378899999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHH----HHHhcCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLN----LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~----lLkk~~iP~IVVLNKIDLL 922 (923)
|..++..+++.+|++|||||++++.....+ .++. .+...++|+|||+||+|+.
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 999999999999999999999874322222 1222 2234578999999999974
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.65 E-value=4.1e-16 Score=146.66 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
|+.++|+|+|++|+|||||+++|++..+..... +.++..+... + ........|.||||||+..|.
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~---------~--~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQ---------V--EVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEE---------E--ESSSCEEEEEEEEECSSCSST
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CCccceEEEE---------E--EECCEEEEEEEEECCChHHHH
Confidence 355789999999999999999999866543221 1111111100 0 001112348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9999999999999999999874322222 2222222 3479999999999984
No 15
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.65 E-value=3.6e-16 Score=148.62 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=80.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....+.||||||+..|
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dt~G~~~~ 76 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--------------DRTVRLQLWDTAGQERF 76 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET--------------TEEEEEEEEEECCSGGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC--------------CeEEEEEEEECCCcHHH
Confidence 3556789999999999999999999766653322222211111111000 00124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH---HhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lL---kk~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++....... .++..+ ...++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 99999999999999999999874322222 222322 23479999999999984
No 16
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.65 E-value=4.9e-16 Score=149.36 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccc--ccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE--NIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e--~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
+.++|+|+|++|+||||||++|++..+.... .+.++..+.... ........ .........|.||||||+..|
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~ 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKF----ITTVGIDFREKRVVYRANGPDG--AVGRGQRIHLQLWDTAGLERF 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEEEECTTSCCC--SSCCCEEEEEEEEEECCSGGG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCc----ccccceeeeeEEEEEecCCccc--ccccCcEEEEEEEeCCCcHHH
Confidence 3467999999999999999999986664322 222222221000 00000000 000000235999999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999874433332 23333332 578999999999984
No 17
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.65 E-value=2.8e-16 Score=150.70 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.++|+|+|++|+|||||+++|++..+.....+ .++..+.... .+ ......|.||||||++.|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~-------~~----~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSANV-------MV----DGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC----CSCCEEEEEE-------EE----TTEEEEEEEECCCCSGGGT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC----cccceeEEEE-------EE----CCEEEEEEEEECCCCHhHH
Confidence 4567899999999999999999997665432111 1111111000 00 0111248899999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...... .++..+... ++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 9999999999999999999875433333 244444443 79999999999974
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=151.43 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..++|+|+|++|+||||||++|++..+.....+.++..+....+.... ....|.||||||+..|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 80 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG--------------KTIKLQIWDTAGQERFRT 80 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGCT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC--------------EEEEEEEEECCCcHhhhh
Confidence 346799999999999999999998766543333332222111111110 112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999974332222 2333332 3378999999999985
No 19
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.65 E-value=3.7e-16 Score=146.24 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
|+.++|+|+|++|+|||||+++|++..+.....+ .++..+.... .+ ......+.||||||+..|.
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~-------~~----~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP----TIEDFYRKEI-------EV----DSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT----TCCEEEEEEE-------EE----TTEEEEEEEEECCCTTCCH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCC----CcceeEEEEE-------EE----CCEEEEEEEEECCCchhhH
Confidence 3557899999999999999999997665432111 1111111000 00 0011238999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+ ...++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9999999999999999999874322222 222222 22479999999999974
No 20
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=4.5e-16 Score=175.26 Aligned_cols=129 Identities=24% Similarity=0.263 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCC-----------cceeecceeeecccccccceeeecc-----ccccCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG-----------GITQQIGATYFPAENIRERTRELKA-----NATLKV 856 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geag-----------GIT~qIgat~~p~e~i~ekt~~I~~-----~~~~k~ 856 (923)
..++|+|+||+++|||||+++|++......... +. ..+...++.......+.+++.. ...+..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~-~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNR-ETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccc-cchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 446799999999999999999975321100000 00 0000000000000000011111 112233
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCC-------HhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle-------~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|+|||||||..|...+..+++.+|++|||||++++.. .++.+++.++...++| +|||+||||+.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 469999999999999999999999999999999998865 7999999999989998 99999999983
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.64 E-value=3.3e-16 Score=150.92 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....|.||||||+..|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG--------------GKYVKLQIWDTAGQERFRS 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET--------------TEEEEEEEEEECCSGGGHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC--------------CEEEEEEEEeCCCcHHHHH
Confidence 34679999999999999999999877654322222222211111110 0112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHH---HHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLN---LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~---lLkk~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++. .+...++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999998743332222 222 2234578999999999984
No 22
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.64 E-value=6.9e-16 Score=149.01 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCC------cceeecceeeecccccccceeeeccccccCCCCEEEEeCC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG------GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geag------GIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTP 865 (923)
.+.++|+|||++|+|||||++.|.+......... ...++++..+...... ........|.|||||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG---------EVKGFKTRFHLYTVP 82 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC---------CSSSCEEEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc---------cccCCceEEEEEeCC
Confidence 3456799999999999999987765332211000 0112222222211100 011112348999999
Q ss_pred CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh---------cCCcEEEEEeCCCcC
Q 002428 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM---------RNTEFIVALNKVRFS 922 (923)
Q Consensus 866 GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk---------~~iP~IVVLNKIDLL 922 (923)
|++.|..++..+++.+|++|||||++++........+..+.. .++|+|||+||+|+.
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 999999999999999999999999996544444444332221 478999999999984
No 23
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.64 E-value=7.6e-17 Score=189.52 Aligned_cols=126 Identities=26% Similarity=0.344 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeecc-----ccccCCCCEEEEeCCC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-----NATLKVPGLLVIDTPG 866 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~-----~~~~k~~~L~IIDTPG 866 (923)
+|| |+||||+++|||||+.+|+...-.....+.+.. +.++..+. ..++.++|+. ...|..+.|+||||||
T Consensus 2 IRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~--g~~~~D~~-~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 2 IIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVDK--GTTRTDNT-LLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCC--SCCSTTCS-TTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred eeE--EEEEcCCCCCHHHHHHHHHHHcCCCcccccccc--CCcccCCc-HHHHhCCCcEEeeeEEEEECCEEEEEEECCC
Confidence 677 899999999999999999853221111111111 11111111 1112222221 2345567799999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.+|...+.++++.||++|+|||+..|+..||..+|+++..+++|+||++||||+.
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999985
No 24
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.64 E-value=3.6e-16 Score=152.30 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=79.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
...+.++|+|+|++|+||||||++|++..+.....+.++..+....+.. ......|.||||||++.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI--------------DGERIKIQLWDTAGQER 81 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE--------------TTEEEEEEEEECCCSHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE--------------CCEEEEEEEEECCCchh
Confidence 3456778999999999999999999987665332222211111111110 00112489999999999
Q ss_pred hh-hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 870 FT-NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~-nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
|. .++..+++.+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 98 7888899999999999999874322222 2222222 3478999999999984
No 25
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=149.51 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.....++++..+....+.... ....|.||||||+..|..+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~ 74 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------EKVKLQIWDTAGQERFRTI 74 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETT--------------EEEEEEEEEETTGGGCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECC--------------EEEEEEEEcCCCchhhhhh
Confidence 46799999999999999999998766533333332222111111110 0124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHhc--CCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk~--~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||++++.....+. ++..+... ++|+|||+||+|+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 999999999999999998843333322 33333332 58999999999974
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.64 E-value=4.3e-16 Score=146.58 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+..... +.++..+..... .+ ......+.||||||+..|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~~~~~------~~----~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE----STIGAAFLTQTV------CL----DDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----CCSSEEEEEEEE------EE----TTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CccceEEEEEEE------EE----CCEEEEEEEEeCCCcHHhh
Confidence 345679999999999999999999866543211 122222111100 00 0011348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...... .++..+.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 9999999999999999999874332222 23333332 378999999999984
No 27
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.64 E-value=6.9e-16 Score=147.16 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.... .+.++..+.... +.. ......+.||||||+..|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~--------~~~--~~~~~~~~i~Dt~G~~~~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKD--------LEV--DGHFVTMQIWDTAGQERFRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC--------CCSEEEEEEE--------EEE--TTEEEEEEEEECCCCGGGHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeEEEEE--------EEE--CCEEEEEEEEeCCCchhhhh
Confidence 3467999999999999999999986654321 222222221110 000 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---Hh----cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk----~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+ .. .++|+|||+||+|+.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 9999999999999999998743322222 22222 22 578999999999984
No 28
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.64 E-value=8.5e-16 Score=145.38 Aligned_cols=110 Identities=23% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.. ..++++..+.. + .+....+.||||||+..|..+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~----------~----~~~~~~~~~~Dt~G~~~~~~~ 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVET----------V----TYKNLKFQVWDLGGLTSIRPY 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEE----------E----EETTEEEEEEEECCCGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEE----------E----EECCEEEEEEECCCChhhhHH
Confidence 4679999999999999999998765531 11122211110 0 111245899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH-Hh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL-KM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lL-kk---~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++....... .++..+ .. .++|+|||+||+|+.
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 99999999999999999986443332 233333 22 479999999999985
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.64 E-value=5.3e-16 Score=147.49 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+.+...+....+.. ......|.||||||+..|..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~~~ 79 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--------------SGQKIKLQIWDTAGQERFRA 79 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE--------------TTEEEEEEEEECTTGGGTCH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--------------CCeEEEEEEEECCCChHhhh
Confidence 3467999999999999999999987654322111111111111110 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+ ...++|+|||+||+|+.
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999998753333222 22223 23578999999999984
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.64 E-value=4.5e-16 Score=147.16 Aligned_cols=115 Identities=21% Similarity=0.132 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....+.||||||+..|..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG--------------GKRVNLAIWDTAGQERFHAL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS--------------SCEEEEEEEECCCC------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC--------------CEEEEEEEEECCCcHhhhhh
Confidence 4679999999999999999999876643322222211111111110 01124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++........ ++..+ ...++|+|||+||+|+.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 999999999999999998743322222 22333 23579999999999984
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.64 E-value=5.3e-16 Score=147.90 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+.++..+....+... ......|.||||||+..|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-------------GDKVATMQVWDTAGQERFQS 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-------------SSCCEEEEEECCC-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEc-------------CCcEEEEEEEECCCChHhhh
Confidence 34679999999999999999999876543222222111111111100 01113489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh-------cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM-------RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk-------~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999999999999998743322222 2222221 578999999999984
No 32
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=5.7e-16 Score=154.39 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc-
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV--q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE- 868 (923)
.+.++|+|+|++|+|||||+|+|++... ......++|..+.... + .......++||||||+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~------------~---~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFS------------V---GPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEE------------E---SCTTSCSEEEEECCCCCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEE------------e---cCCCCCcEEEEcCCCCCc
Confidence 3467899999999999999999998752 1222222222111000 0 01223569999999953
Q ss_pred ---------chhhHHHhhccC---CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 ---------SFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 ---------sf~nlrs~~ls~---aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++..++.. +|+||||||+++++......++..+...++|+|||+||+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence 334444455544 888999999999888888888888888899999999999985
No 33
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.63 E-value=9.2e-16 Score=147.75 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccc----------cceeeeccc-----------
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR----------ERTRELKAN----------- 851 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~----------ekt~~I~~~----------- 851 (923)
..++|+|+|++|+||||||++|++..+.....+.+...+....+...... .....+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 35679999999999999999999877654322222222222111111100 000000000
Q ss_pred --cccCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH-hcCCcEEEEEeCCCc
Q 002428 852 --ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVRF 921 (923)
Q Consensus 852 --~~~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk-k~~iP~IVVLNKIDL 921 (923)
.......|.||||||+..|..++..+++.+|++|||||++++.....+ .++..+. ...+|+|||+||+|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 000014589999999999999999999999999999999885433333 2333333 346999999999993
No 34
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=150.71 Aligned_cols=119 Identities=20% Similarity=0.260 Sum_probs=78.3
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG 866 (923)
......+.++|+|+|++|+||||||++|++..+.... +.++++.... .+ .+....|.||||||
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~----------~~----~~~~~~~~l~Dt~G 76 (190)
T 2h57_A 14 LVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIE----------KF----KSSSLSFTVFDMSG 76 (190)
T ss_dssp -------CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEE----------EE----ECSSCEEEEEEECC
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEE----------EE----EECCEEEEEEECCC
Confidence 3344566788999999999999999999876521111 1122221110 01 11224599999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH-Hh-----cCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL-KM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lL-kk-----~~iP~IVVLNKIDLL 922 (923)
+..|..++..++..+|++|||||+++....... .++..+ .. .++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 999999999999999999999999874322221 233333 22 478999999999985
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.63 E-value=4.2e-16 Score=146.72 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+ .++..+.... +.. ......+.||||||+..|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~--------~~~--~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK----TIGVDFLERQ--------IQV--NDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSC----CCSSSEEEEE--------EEE--TTEEEEEEEECCTTGGGTTC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----ceEEEEEEEE--------EEE--CCEEEEEEEEcCCCcHhHHH
Confidence 346799999999999999999998665432111 1111111100 000 00113489999999999998
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 899999999999999999874322222 23333322 479999999999974
No 36
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=5.1e-16 Score=153.05 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+||||||++|++..+.....+.++..+....+.... ....|.||||||+..|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~ 84 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING--------------KKVKLQLWDTAGQERFRT 84 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT--------------EEEEEEEECCTTGGGGTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEeCCCcHHHHH
Confidence 456799999999999999999998766433222222211111111000 012489999999999998
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCc
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRF 921 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDL 921 (923)
++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 889999999999999999874332222 23333332 37899999999998
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.63 E-value=6.1e-16 Score=145.90 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+... +.+.++..+...... + ......+.||||||+..|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~------~----~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPN----INPTIGASFMTKTVQ------Y----QNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTT----CCCCCSEEEEEEEEE------E----TTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEE------E----CCeEEEEEEEcCCCchhhh
Confidence 3457799999999999999999998765432 122222222111000 0 0011348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+. ...+|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9999999999999999999875433332 2334443 3368999999999984
No 38
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=1.1e-15 Score=148.75 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC-----
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 866 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG----- 866 (923)
.+.++|+|+|++|+|||||+++|++..+... +...++.++... .+ .+ ...+.||||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~t~~~~--------~~----~~-~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLAR----TSSKPGKTQTLN--------FY----II-NDELHFVDVPGYGFAK 83 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEE--------EE----EE-TTTEEEEECCCBCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccc----cCCCCCceeeEE--------EE----EE-CCcEEEEECCCCCccc
Confidence 4567899999999999999999998653211 111111111000 00 00 12599999999
Q ss_pred -----CcchhhHHHhhccCC---CEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 -----HESFTNLRSRGSGLC---DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 -----hEsf~nlrs~~ls~a---DiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..|..++..++..+ |++|||||++++.......++..+...++|+|||+||+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 556666666776666 99999999999888888777788878899999999999985
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.63 E-value=3.1e-16 Score=147.93 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=76.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|++..+.....+.++..+....+... .....|.||||||+..|..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 69 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN--------------GKKVKLQIWDTAGQERFRTIT 69 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS--------------SCEEEEEEECCTTGGGTSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC--------------CEEEEEEEEeCCCChhhhhhH
Confidence 569999999999999999999876643222222211111111100 011248999999999999889
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCc
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRF 921 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDL 921 (923)
..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 9999999999999999874332222 23333332 37899999999997
No 40
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.63 E-value=9.3e-16 Score=148.73 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=80.3
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG 866 (923)
..+...+.++|+|+|++|+|||||+++|++..+. .+.+.++..+. . + .+....|.||||||
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~t~~~~~~--------~--~----~~~~~~~~i~Dt~G 74 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-----HTSPTIGSNVE--------E--I----VINNTRFLMWDIGG 74 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCE-----EEECCSSSSCE--------E--E----EETTEEEEEEEESS
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC-----ccCCcCceeeE--------E--E----EECCEEEEEEECCC
Confidence 3344567788999999999999999999986651 12222221110 0 1 11224599999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
+..|..++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 999999999999999999999999986544333 3333333 2579999999999984
No 41
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.63 E-value=8e-16 Score=165.09 Aligned_cols=117 Identities=24% Similarity=0.393 Sum_probs=86.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGH 867 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGh 867 (923)
.....+.|+|+|++|+|||||+|+|++..+.. ...+++|... ...+. ... ...|+||||||+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~-------------~~~~~---~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR-------------VLGVK---NIPNEAQIIFLDTPGI 69 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC-------------EEEEE---EETTTEEEEEEECCCC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE-------------EEEEE---ecCCCCeEEEEECcCC
Confidence 34456779999999999999999999877642 1122222111 11110 111 245999999998
Q ss_pred cchh----------hHHHhhccCCCEEEEEEeCCCCCCHhHHHH-HHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFT----------NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~----------nlrs~~ls~aDiVILVVDas~gle~qtiEs-L~lLkk~~iP~IVVLNKIDLL 922 (923)
..+. ..+..++..+|+||||||++++.......+ +..+...++|+|||+||+|++
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 5543 566678899999999999999888888887 777888899999999999985
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.63 E-value=6.4e-16 Score=150.73 Aligned_cols=117 Identities=20% Similarity=0.136 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
-+.++|+|||++|+||||||++|++..+..... +.++..+..... .+ ......|.||||||+..|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~----~t~~~~~~~~~~------~~----~~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR----TTIGVEFSTRTV------ML----GTAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC----CCSSEEEEEEEE------EE----TTEEEEEEEEEESCCCTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEE------EE----CCEEEEEEEEeCCCchhhh
Confidence 345679999999999999999999876653211 122221111000 00 0111348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 999999999999999999987433222 233444433 368999999999984
No 43
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.63 E-value=5.5e-16 Score=171.90 Aligned_cols=130 Identities=26% Similarity=0.277 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeee-ccccccCCCCEEEEeCCCCcchh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..++|+|+||+++|||||+++|++.....+..............+....+..+..+ ..........|+|||||||..|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 34679999999999999999998631111100000000000000000000000000 00011223569999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..+..+++.+|++|||||++++...++.+++.++...++| +|||+||||++
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 9999999999999999999999999999999999888999 89999999985
No 44
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=150.06 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+||||||++|++..+.... .+.++..+.... +. .......|.||||||+..|..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~--------~~--~~~~~~~~~l~Dt~G~~~~~~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAF----VSTVGIDFKVKT--------IY--RNDKRIKLQIWDTAGLERYRTI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCC----CCCCSEEEEEEE--------EE--ETTEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCccceeEEEEE--------EE--ECCeEEEEEEEECCCchhhcch
Confidence 357999999999999999999987764321 122222211110 00 0011134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||++++.....+ .++..+.. .++|+|||+||+|+.
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 99999999999999999874332222 23333433 478999999999984
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.63 E-value=6.8e-16 Score=147.00 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.....+. ++..+.... .+ ......|.||||||+..|.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~~~~~~~~-------~~----~~~~~~~~~~Dt~G~~~~~ 71 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT----IEDSYTKIC-------SV----DGIPARLDILDTAGQEEFG 71 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT----CCEEEEEEE-------EE----TTEEEEEEEEECCCTTTTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCC----cCceEEEEE-------EE----CCEEEEEEEEECCCchhhH
Confidence 45577999999999999999999987554321111 111111000 00 0001248999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHH----HHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLN----LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~----lLkk~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++......+ .++. .+...++|+|||+||+|+.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999874322222 2222 2234578999999999984
No 46
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.63 E-value=7.4e-16 Score=150.11 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+..... +.++..+.... +. .......|.||||||+..|..+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~--------~~--~~~~~~~~~l~Dt~G~~~~~~~ 87 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFV----STVGIDFKVKT--------VY--RHDKRIKLQIWDTAGQERYRTI 87 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCCCEEEEEE--------EE--ETTEEEEEEEEECCSCCSSCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcC----CceeEEEEEEE--------EE--ECCeEEEEEEEeCCCcHHHhhh
Confidence 4679999999999999999999876643211 22222111100 00 0001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999999999999999874332222 23444443 378999999999984
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=9.7e-16 Score=146.51 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.... +.+.++..+..... .+ ......|.||||||+..|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~~t~~~~~~~~~~------~~----~~~~~~~~~~Dt~G~~~~~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---FISTVGIDFRNKVL------DV----DGVKVKLQMWDTAGQERFRS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC---CCCCCSCEEEEEEE------EE----TTEEEEEEEEECCCC-----
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC---cCCceeeEEEEEEE------EE----CCEEEEEEEEeCCCcHHHHH
Confidence 4567999999999999999999987664211 11222221111100 00 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 999999999999999999874332222 23333332 578999999999985
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.62 E-value=3.9e-16 Score=149.01 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+... +.+.++..+... .+.... .....|.||||||+..|.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~----~~~t~~~~~~~~--------~~~~~~-~~~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQ----YKQTIGLDFFLR--------RITLPG-NLNVTLQIWDIGGQTIGG 70 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHH----HHHTTTSSEEEE--------EEEETT-TEEEEEEEEECTTCCTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCC----CCCceeEEEEEE--------EEEeCC-CCEEEEEEEECCCCcccc
Confidence 4567899999999999999999998665321 112222111110 000000 001348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh-----cCCc-EEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM-----RNTE-FIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk-----~~iP-~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++.....+ .++..+.. ...| +|||+||+|+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 9999999999999999999874333222 23333333 2566 89999999984
No 49
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.62 E-value=5e-16 Score=151.85 Aligned_cols=119 Identities=23% Similarity=0.150 Sum_probs=79.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
...+.++|+|+|++|+|||||+++|++..+.....+.++..+....+.. ......|.||||||+..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--------------DGKQIKLQIWDTAGQES 82 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE--------------TTEEEEEEEECCTTGGG
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--------------CCEEEEEEEEECCCchh
Confidence 3455678999999999999999999987654322111111111111100 00112489999999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
|..++..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999899999999999999999874333222 23333433 378999999999984
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.62 E-value=9.2e-16 Score=143.67 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+. ++..+... +. .......+.||||||+..|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t----~~~~~~~~---------~~--~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----KADSYRKK---------VV--LDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTT----CCEEEEEE---------EE--ETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCC----cceEEEEE---------EE--ECCEEEEEEEEECCCcchhHH
Confidence 4567999999999999999999987654221111 11111100 00 000112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999874322222 2222222 2378999999999984
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.62 E-value=2.3e-15 Score=141.88 Aligned_cols=109 Identities=20% Similarity=0.150 Sum_probs=77.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|+|++|+|||||+++|++..+.. ..++++..+. . ..+....+.||||||+..|..++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~----------~----~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVE----------T----VEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-----CCCCSSCCEE----------E----EECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-----ccCcCceeEE----------E----EEECCEEEEEEEcCCChhhHHHH
Confidence 369999999999999999998755432 1112221100 0 11223459999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 9999999999999999875333222 23333332 378999999999984
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=8.5e-16 Score=147.07 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|+|++|+|||||+++|++..+.....+. ++..+.... .+ ......|.||||||+..|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~-------~~----~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----KADSYRKKV-------VL----DGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTT----CCEEEEEEE-------EE----TTEEEEEEEEECCCTTCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCc----cceEEEEEE-------EE----CCEEEEEEEEECCCCccc
Confidence 456678999999999999999999986654221111 111111000 00 001124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999874322222 2222222 2379999999999984
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=152.86 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|.+|+|||||+++|++..+.....+.++..+....+.. ......|.||||||+..|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~l~l~Dt~G~~~~~~ 90 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL--------------RGKKIRLQIWDTAGQERFNS 90 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE--------------TTEEEEEEEEEECCSGGGHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE--------------CCeEEEEEEEeCCCcHHHHH
Confidence 3467999999999999999999986654322121111111111100 00112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999998854333332 223333 3478999999999984
No 54
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=7.3e-16 Score=149.21 Aligned_cols=117 Identities=22% Similarity=0.210 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.++|+|+|++|+||||||++|++..+..... +.++..+.... +. .......|.||||||+..|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~~--------~~--~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELA----ATIGVDFKVKT--------IS--VDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC----CCCSEEEEEEE--------EE--ETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCC----CccceEEEEEE--------EE--ECCeEEEEEEEeCCCchhhh
Confidence 455789999999999999999999876543221 22222111100 00 00111348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 9999999999999999999874333222 23344443 368999999999983
No 55
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.62 E-value=1.3e-15 Score=146.26 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~- 871 (923)
+.++|+|+|++|+|||||+++|++..+..+..++++.......+ .+....+.||||||+..|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF----------------EYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEE----------------EETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEE----------------EECCcEEEEEECCCcccCCC
Confidence 44679999999999999999999866543322222221111111 1112348999999988774
Q ss_pred -----hHHHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 -----NLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 -----nlrs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..++. .+|++|+|||+++. .....++..+...++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 33345554 79999999999862 223345555666789999999999973
No 56
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.62 E-value=1.2e-15 Score=142.25 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+.+ +..+... +. .......+.||||||+..|..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----~~~~~~~---------~~--~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTI----EDSYRKQ---------VV--IDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC----CEEEEEE---------EE--ETTEEEEEEEEECCCCSSCCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCcc----ceEEEEE---------EE--ECCEEEEEEEEECCCchhhhH
Confidence 44679999999999999999999866543211111 1111000 00 000112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|+|||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 99999999999999999987432222 222333322 379999999999975
No 57
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.62 E-value=5.8e-16 Score=148.30 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=75.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|++..+.... .+.++..+... + ........|.||||||++.|
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~---------~--~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSAN---------V--VVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCC---------C--C-------CEEECCCC-CTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCeeeeeEEEE---------E--EECCEEEEEEEEECCCChhh
Confidence 345678999999999999999999976653221 11111111000 0 00111234789999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHH--HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiE--sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++........ ++..+.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 999999999999999999998744333332 3444443 279999999999974
No 58
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.62 E-value=8.2e-16 Score=170.46 Aligned_cols=112 Identities=31% Similarity=0.347 Sum_probs=86.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCC----------------CCcceeecceeeecccccccceeeeccccccCCCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE----------------AGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~ge----------------agGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~ 858 (923)
++|+|+||+++|||||+++|++.....+. ..|+|..+... ........
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~----------------~~~~~~~~ 67 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV----------------EYSTAARH 67 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEE----------------EEECSSCE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeE----------------EeccCCeE
Confidence 56999999999999999999863211110 11111111000 01122356
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
|+|||||||..|...+..+++.+|++|||||++++...++.+++.++...++| +|||+||||+.
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 99999999999999999999999999999999999999999999988888999 78999999985
No 59
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.62 E-value=6.9e-16 Score=148.37 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+..... +.++..+...... ......|.||||||++.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~-----------~~~~~~~~l~Dt~G~~~~~~ 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD----PTIENTFTKLITV-----------NGQEYHLQLVDTAGQDEYSI 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----TTCCEEEEEEEEE-----------TTEEEEEEEEECCCCCTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CCccccEEEEEEE-----------CCEEEEEEEEeCCCchhhhH
Confidence 45679999999999999999999765542211 1222211110000 00112489999999999988
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH----HhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL----kk~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+ ...++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 8889999999999999998733222222 22222 23478999999999984
No 60
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.1e-15 Score=144.02 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.... .+.++..+..... + ......+.||||||+..|..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~-------~----~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY----IPTVEDTYRQVIS-------C----DKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC----CCCSCEEEEEEEE-------E----TTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEE-------E----CCEEEEEEEEECCCchhhHHH
Confidence 357999999999999999999986654321 1222222111000 0 011134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 9999999999999999987432221 223333332 368999999999974
No 61
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.62 E-value=9.7e-16 Score=149.79 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+||||||++|++..+... ..+.++..+... .+....|.||||||+..|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKI--------------TKGNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEE--------------EETTEEEEEEEECCSHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEE--------------EeCCEEEEEEECCCCHhHH
Confidence 4457799999999999999999998766422 122222222111 1122358999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 9999999999999999999874333322 23333322 579999999999985
No 62
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=9.3e-16 Score=150.01 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=80.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|++..+.... .+.++..+..... + ......|.||||||++.|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~-------~----~~~~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY----VPTVFENFSHVMK-------Y----KNEEFILHLWDTAGQEEY 84 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEE-------E----TTEEEEEEEEEECCSGGG
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc----CCeeeeeeEEEEE-------E----CCEEEEEEEEECCCcHHH
Confidence 345578999999999999999999987654322 1222222211000 0 001123799999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..++..+++.+|++|||||+++......+ .++..+... ++|+|||+||+|+.
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 99999999999999999999985333332 233344333 68999999999984
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=148.65 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=79.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|+|++|+||||||++|++..+.....+ .++..+..... + ......|.||||||+..|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~-------~----~~~~~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP----TKADSYRKKVV-------L----DGEEVQIDILDTAGQEDY 75 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCT----TCCEEEEEEEE-------E----TTEEEEEEEEECCCTTCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ccceEEEEEEE-------E----CCEEEEEEEEcCCChhhh
Confidence 45567899999999999999999998765432111 11111110000 0 001124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999874322222 2222222 2378999999999984
No 64
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.61 E-value=1.8e-15 Score=149.12 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=75.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
...+.++|+|+|..|+|||||+++|++.... . ..++..+.... . ...+ .......|.||||||++.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~------~~~~~~~~~~~-~---~~~~---~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N------ETLFLESTNKI-Y---KDDI---SNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G------GGGGCCCCCSC-E---EEEE---CCTTSCCEEEEECCSSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c------ceeeeccccce-e---eeec---cCCCeeEEEEEECCCCHH
Confidence 4456788999999999999999988763221 1 11111111000 0 0000 011234699999999999
Q ss_pred hhhHH---HhhccCCCEEEEEEeCCCCCCHhHHHH---HHHH--HhcCCcEEEEEeCCCcC
Q 002428 870 FTNLR---SRGSGLCDIAILVVDIMHGLEPQTIES---LNLL--KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlr---s~~ls~aDiVILVVDas~gle~qtiEs---L~lL--kk~~iP~IVVLNKIDLL 922 (923)
|..++ ..+++.+|++|||||+++.+......+ +..+ ...++|+|||+||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 82 FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 88776 789999999999999998632222222 2222 23379999999999974
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.61 E-value=9.9e-16 Score=150.32 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+.++..+....+.. ......|.||||||+..|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV--------------DDRLVTMQIWDTAGQERFQS 72 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES--------------SSCEEEEEEEEECSSGGGSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE--------------CCEEEEEEEEeCCCcHHHHH
Confidence 3467999999999999999999987665332222221111111100 00113489999999999998
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh-------cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM-------RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk-------~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||++++.....+. ++..+.. .++|+|||+||+|+.
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 8889999999999999998743322222 2222211 478999999999984
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.61 E-value=1.1e-15 Score=150.94 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+||||||++|++..+.....+.++..+....+... .....|.||||||+..|..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD--------------GKTVKLQIWDTAGQERFRTI 73 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET--------------TEEEEEEEECCTTTTTTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC--------------CEEEEEEEEeCCChHHHHHH
Confidence 4679999999999999999999877653322222221111111100 01124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH---hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qtiE-sL~lLk---k~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++......+. ++..+. ..++|+|||+||+|+.
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999999998743333222 233333 2468999999999985
No 67
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=2.5e-15 Score=145.12 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC-----
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 866 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG----- 866 (923)
...++|+|+|++|+|||||+++|++..+... .+.++.++... .. .....+.||||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~t~~~~--------~~-----~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-----SKTPGKTRSIN--------FY-----LVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-----CSSCCCCCCEE--------EE-----EETTTEEEEECCCBSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc-----cCCCCCccCeE--------EE-----EECCcEEEEECCCCcccc
Confidence 3457899999999999999999998663311 11111111000 00 0123589999999
Q ss_pred -----CcchhhHHHhhccC---CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 -----HESFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 -----hEsf~nlrs~~ls~---aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..|..++..+++. +++||+|+|++.+.......++..+...++|+|||+||+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 44455555555554 499999999998888888877888888899999999999985
No 68
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.4e-15 Score=148.33 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+..... +.++..+.. .+. .......|.||||||+..|..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~---------~~~--~~~~~~~~~i~D~~G~~~~~~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV----PTVFDHYAV---------SVT--VGGKQYLLGLYDTAGQEDYDR 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC----CSSCCCEEE---------EEE--SSSCEEEEEEECCCCSSSSTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC----CcccceeEE---------EEE--ECCEEEEEEEEECCCCcchhH
Confidence 34679999999999999999999876542211 111111100 000 000113489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 999999999999999999875333333 244455444 79999999999985
No 69
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.6e-15 Score=148.67 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+||||||++|++..+... +.+.++.++...... .......|.||||||+..|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN----ISPTIGASFMTKTVP----------CGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT----CCCCSSEEEEEEEEE----------CSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC----cCCCcceeEEEEEEE----------eCCEEEEEEEEcCCCchhhH
Confidence 4457899999999999999999998765422 222333222211100 00112348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999999999875433332 23333333 378999999999984
No 70
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=2.2e-15 Score=168.82 Aligned_cols=128 Identities=26% Similarity=0.401 Sum_probs=84.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc--cCCCCcce------eecceee----ecccccccceeeeccc-----cccCCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGIT------QQIGATY----FPAENIRERTRELKAN-----ATLKVP 857 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq--~geagGIT------~qIgat~----~p~e~i~ekt~~I~~~-----~~~k~~ 857 (923)
++|+|+||+++|||||+++|++.... ......+. ...+..+ +......++.+++... ..+...
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 56999999999999999999864311 00000000 0000000 0000000011111111 112234
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
.|+|||||||..|...+..+++.||++|||||+++++..++.+++.++...++| +|||+||||++
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 599999999999999999999999999999999999999999999888888874 99999999985
No 71
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=149.23 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|||++|+|||||+++|++..+.... .+.++..+... +.. ......|.||||||++.|.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~---------~~~--~~~~~~~~i~Dt~G~~~~~ 82 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAV---------VSV--DGRPVRLQLCDTAGQDEFD 82 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEE---------EEE--TTEEEEEEEEECCCSTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCcccceeEEE---------EEE--CCEEEEEEEEECCCCHHHH
Confidence 45678999999999999999999986643221 11111111100 000 0011237899999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 9988999999999999999874433333 234444433 79999999999984
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=150.53 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=76.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+||||||++|++..+... +.+.++..+.... +. .......|.||||||+..|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~--------~~--~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN----ISATLGVDFQMKT--------LI--VDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC--------------CEEEE--------EE--ETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc----CCCCccceeEEEE--------EE--ECCEEEEEEEEECCCCcch
Confidence 34567899999999999999999998765422 1122222111100 00 0011124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh---cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||++++.....+. ++..+.. .++|+|||+||+|+.
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999998754333322 3333332 378999999999984
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.61 E-value=1e-15 Score=152.29 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|+...+.....+.+ +..+..... .......|.||||||++.|
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~----~~~~~~~~~-----------~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----FDNYSANVM-----------VDGKPVNLGLWDTAGLEDY 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS----EEEEEEEEE-----------CC-CEEEEEEEEECCSGGG
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee----cceeEEEEE-----------ECCEEEEEEEEECCCchhh
Confidence 4567889999999999999999999766543221111 111110000 0011123779999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||++++...... .++..+... ++|+|||+||+|+.
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 99999999999999999999985444333 244445444 79999999999974
No 74
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.61 E-value=2e-15 Score=154.87 Aligned_cols=119 Identities=19% Similarity=0.191 Sum_probs=78.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
..+|.++|+|||..||||||||++|+...|... +.++++..+...... .......|.||||+|++.
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~----~~~Tig~d~~~k~~~----------~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----YQATIGIDFLSKTMY----------LEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEE----------CSSCEEEEEEECCSCTTT
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCC----cCCccceEEEEEEEE----------ecceEEEEEEEECCCchh
Confidence 357788999999999999999999998776533 233333332221100 011123489999999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHH---HhcCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lL---kk~~iP~IVVLNKIDLL 922 (923)
|..++..+++.++++|||||++.......+. ++..+ ...++|+|||+||+||.
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 9999999999999999999999743333322 23322 34478999999999984
No 75
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.60 E-value=3.4e-15 Score=165.62 Aligned_cols=130 Identities=28% Similarity=0.341 Sum_probs=88.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeec-cccc-----cCCCCEEEEeC
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK-ANAT-----LKVPGLLVIDT 864 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~-~~~~-----~k~~~L~IIDT 864 (923)
....++|+|+|++++|||||+++|++...... .+.....++... ........+.... .... .....|+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCE-SCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECT-TSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeecc-ccccccceecccccccccccccccccceEEEEEC
Confidence 34567899999999999999999997543210 011111111110 0000000000000 0000 01135999999
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
|||..|...+..++..+|++|||||++++. ..++.+++.++...++ |+|||+||+|++
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 999999999999999999999999999987 8899999988887775 899999999985
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.60 E-value=1.8e-15 Score=146.83 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 789 ~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
..+++.++|+|+|.+|+|||||+++|++..+.....+.+ +..+... +. .......|.||||||+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~---------~~--~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDSYRKQ---------VV--IDGETCLLDILDTAGQE 80 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTC----CEEEEEE---------EE--ETTEEEEEEEEECCC--
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCcc----ceEEEEE---------EE--ECCEEEEEEEEECCChH
Confidence 346777889999999999999999999766542211111 1111000 00 00011248999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.|..++..++..+|++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp ---------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 99999999999999999999998743322222 2222322 378999999999975
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.7e-15 Score=151.66 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+++|++..+.....+. ++..+..... .+ ......|.||||||++.|..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t----~~~~~~~~~~------~~----~~~~~~l~l~Dt~G~~~~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT----IGVDFMIKTV------EI----NGEKVKLQIWDTAGQERFRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC----CSEEEEEEEE------EE----TTEEEEEEEEEECCSGGGHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc----cceeEEEEEE------EE----CCEEEEEEEEECCCcHHHHH
Confidence 3567999999999999999999987665332222 2221111100 00 00012489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999999999874332222 2333332 3478999999999984
No 78
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=2.1e-15 Score=151.72 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=81.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|||.+|+||||||++|++..+.... .+.++..+... + ........|.||||||++.|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~---------~--~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTAC---------L--ETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEE---------E--EC--CEEEEEEEEECCSGGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEE---------E--EECCEEEEEEEEECCCCHhH
Confidence 456788999999999999999999987664321 22222222110 0 00111234899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qt--iEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++...... ..++..+... ++|+|||+||+|+.
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 9999999999999999999998544333 2344444443 78999999999984
No 79
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=142.85 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc--hh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--FT 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--f~ 871 (923)
.++|+|+|++|+|||||+++|++..+... .+.++.++.... ..+ ......|.||||||+.. +.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-----~~~~~~~~~~~~------~~~----~~~~~~~~~~D~~g~~~~~~~ 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-----HEQLGEDVYERT------LTV----DGEDTTLVVVDTWEAEKLDKS 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC----------CCCSSSSEEEEE------EEE----TTEEEEEEEECCC-------C
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-----cCccccceeEEE------EEE----CCEEEEEEEEecCCCCccchh
Confidence 46799999999999999999998665421 111222111100 000 00112489999999987 56
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc----CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR----NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~----~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||+++....... .++..+... ++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 6777888999999999999874332222 233334432 78999999999985
No 80
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.2e-15 Score=176.51 Aligned_cols=132 Identities=26% Similarity=0.366 Sum_probs=88.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCC-----cceeecceeee-----cccccccceeeecc-----ccccC
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG-----GITQQIGATYF-----PAENIRERTRELKA-----NATLK 855 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geag-----GIT~qIgat~~-----p~e~i~ekt~~I~~-----~~~~k 855 (923)
....++|+|||++|+||||||++|++......... .....+|...+ .......+.+++.. ...+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 34467899999999999999999987532211000 00000010000 00000011111111 11223
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-------le~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
...|+|||||||..|...+..+++.+|++|||||++++ +..++.+++.++...++| +|||+||||++
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 35699999999999999999999999999999999875 567899999888888876 99999999985
No 81
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=1.9e-15 Score=146.94 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.... .+.++..+... +. .......|.||||||++.|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~---------~~--~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTAS---------FE--IDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEE---------EE--CSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEE---------EE--ECCEEEEEEEEECCCChhhh
Confidence 34567999999999999999999987664321 12222211100 00 01112348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 9999999999999999999874333332 23333433 378999999999984
No 82
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=2.9e-15 Score=166.45 Aligned_cols=130 Identities=28% Similarity=0.344 Sum_probs=89.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc---cccCCCCcceeecceeeeccccc----ccceeeecc--cccc-CCCCEEEE
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENI----RERTRELKA--NATL-KVPGLLVI 862 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn---Vq~geagGIT~qIgat~~p~e~i----~ekt~~I~~--~~~~-k~~~L~II 862 (923)
..++|+|+||+++|||||+++|++.. +.....+|+|..++...+..... .+....... ...+ ....|+||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34679999999999999999998643 22233456676655433221100 000000000 0000 01359999
Q ss_pred eCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 863 DTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
|||||+.|...+.+++..+|++|||||+++++ ..++.+++.++...++ |+|||+||||++
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 99999999999999999999999999999987 8999999888877765 799999999985
No 83
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.60 E-value=1.8e-15 Score=145.46 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.....+.+ +..+..... + ......|.||||||+..|..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~-------~----~~~~~~~~i~Dt~G~~~~~~~ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI----EDSYRKQVV-------I----DGETCLLDILDTAGQEEYSAM 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC----CEEEEEEEE-------E----TTEEEEEEEEECCCC---CTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc----hheEEEEEE-------E----CCcEEEEEEEECCCcHHHHHH
Confidence 4579999999999999999999866543211111 111110000 0 001123789999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 99999999999999999874332222 2222222 2478999999999984
No 84
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=150.64 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|||++|+|||||+++|++..+.... .++++..+.... +.. ......|.||||||++.|.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~--------~~~--~~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ----GSTIGVDFTMKT--------LEI--QGKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------CEEEEE--------EEE--TTEEEEEEEECCTTCGGGH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC----CCCcceEEEEEE--------EEE--CCEEEEEEEEECCCcHhHH
Confidence 33467999999999999999999987654321 112221111100 000 0001248999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 9999999999999999999874332222 23333332 468999999999984
No 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.60 E-value=5.2e-16 Score=149.45 Aligned_cols=115 Identities=19% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.... .+.++..+.... +.. ......|.||||||+..|..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~--------~~~--~~~~~~~~l~Dt~G~~~~~~~ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTF----ISTIGIDFKIRT--------IEL--DGKRIKLQIWDTAGQERFRTI 73 (183)
T ss_dssp EEEEEEECCCCC----------------CH----HHHHCEEEEEEE--------EEE--TTEEEEEEEEEC---------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCcccceeEEEE--------EEE--CCEEEEEEEEcCCCChhhhhh
Confidence 357999999999999999999876554221 112221111100 000 001134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 99999999999999999874332222 23333433 378999999999984
No 86
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=1.3e-15 Score=160.80 Aligned_cols=113 Identities=25% Similarity=0.325 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
|+.++|+|+|++|+|||||+|+|++.++..+..+|+|.......+. +....+.||||||+.+|.
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS----------------TTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEE----------------CSSCEEEEEECCCCSCSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEE----------------eCCCceEEEECcCCCccc
Confidence 4567899999999999999999998776545444444332111111 122458999999988776
Q ss_pred h----------HHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 N----------LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 n----------lrs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. .+..+ +..+|++|+|||+++ ......++..+...++|+|||+||+|+.
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 2 12223 378999999999987 2344555566777799999999999973
No 87
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.60 E-value=2.3e-15 Score=167.22 Aligned_cols=128 Identities=32% Similarity=0.381 Sum_probs=90.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---ccCCCCcceeecceeeeccccc----ccceeeecc--cccc-CCCCEEEEeC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENI----RERTRELKA--NATL-KVPGLLVIDT 864 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV---q~geagGIT~qIgat~~p~e~i----~ekt~~I~~--~~~~-k~~~L~IIDT 864 (923)
++|+|+||+++|||||+++|++... .....+|+|..++...+..... .+.+..+.. ...+ ....|+||||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 5699999999999999999986432 2233456666555433222110 000000000 0000 0135999999
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
|||..|...+.+++..+|++|||||+++++ ..++.+++.++...++ |+|||+||||++
T Consensus 91 PGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 91 PGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp SSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred CChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 999999999999999999999999999987 8999999888877665 799999999985
No 88
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=3.1e-15 Score=148.02 Aligned_cols=114 Identities=22% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|.+|+|||||+++|++..+.....+.++.. +... +. .......|.||||||++.|..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~---------~~--~~~~~~~l~i~Dt~G~~~~~~~ 89 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN----YIAD---------IE--VDGKQVELALWDTAGQEDYDRL 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC----CEEE---------EE--ETTEEEEEEEECCCCSGGGTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce----EEEE---------EE--ECCEEEEEEEEECCCchhHHHH
Confidence 4579999999999999999999876643222211111 1100 00 0001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||++........ .++..+... ++|+|||+||+|++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 99999999999999999874333222 234444443 79999999999985
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.5e-15 Score=150.88 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.++|+|+|++|+|||||+++|++..+.... .+.++..+..... + ......|.||||||+..|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-------~----~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIE-------V----DGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEE-------E----TTEEEEEEEEECTTCTTCT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEE-------E----CCEEEEEEEEECCCcHHHH
Confidence 44568999999999999999999987654221 1112211111000 0 0011348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++........ .++..+... ++|+|||+||+|++
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 9999999999999999999874332222 234444443 79999999999984
No 90
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.59 E-value=4.8e-15 Score=149.96 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc---
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 868 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE--- 868 (923)
.+.++|+|+|.+|+||||||++|++..+......++|..+.... ..+....|.||||||+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~----------------~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGH----------------FDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEE----------------EEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeee----------------eecCCCeEEEEECCCCcCcc
Confidence 45678999999999999999999987654222222221111100 01122348999999983
Q ss_pred ---ch---hhHHHhhccCCCEEEEEEeCCCCCCH---hHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 869 ---SF---TNLRSRGSGLCDIAILVVDIMHGLEP---QTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 869 ---sf---~nlrs~~ls~aDiVILVVDas~gle~---qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.. ...+..++..+|++|||||+++.... ....++..+... ++|+|||+||+|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC 155 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence 31 11223457889999999999986442 234556666665 79999999999985
No 91
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=2.3e-15 Score=171.00 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCC--Ccc---eeecce-----eeecccccccceeeeccc-----cccCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGI---TQQIGA-----TYFPAENIRERTRELKAN-----ATLKVP 857 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~gea--gGI---T~qIga-----t~~p~e~i~ekt~~I~~~-----~~~k~~ 857 (923)
..++|+|||++|+|||||+++|++........ ..+ ...++. .++.......+.+++... ..+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 34679999999999999999998642110000 000 000000 000111111111122111 122345
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-------le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
.|+|||||||..|...+..+++.+|++|||||++++ +..++.+++.++...++ |+|||+||||++
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 699999999999999999999999999999999987 66899999888888886 599999999985
No 92
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=1.4e-15 Score=159.13 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
|+.++|+|+|++|+|||||+|+|++..+..+..+++|.......+. +....+.||||||+.+|.
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIME----------------YREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEE----------------ETTEEEEEEECCCCSCCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEE----------------ECCceEEEEeCCCccccc
Confidence 4567899999999999999999998776544444444332221111 112348999999998876
Q ss_pred h------HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CcEEEEEeCCCcC
Q 002428 872 N------LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVRFS 922 (923)
Q Consensus 872 n------lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~-iP~IVVLNKIDLL 922 (923)
. ++..++ ..+|++|+|||+++. ...+.++..+...+ +|+|||+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 65 AHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp SSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred cCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 5 444454 689999999999873 34455555666667 9999999999963
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.9e-15 Score=145.68 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.. +.++++..+ . .+ .+....+.||||||++.|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~--------~--~~----~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNV--------E--EI----VINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-----EECCSCSSC--------E--EE----EETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----CcCCCccce--------E--EE----EECCEEEEEEECCCCHhHH
Confidence 456789999999999999999999765431 111221110 0 01 1122459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 9999999999999999999986543333 33333332 479999999999984
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.4e-15 Score=146.36 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.... .+.++..+..... + ......|.||||||+..|.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-------~----~~~~~~~~l~Dt~G~~~~~ 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY----IPTIEDTYRQVIS-------C----DKSVCTLQITDTTGSHQFP 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT----SCCCCEEEEEEEE-------E----TTEEEEEEEEECCGGGSCH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc----cCccccceeEEEE-------E----CCEEEEEEEEeCCChHHhH
Confidence 34578999999999999999999986654321 1222222111000 0 0111248999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHH---HHHh--cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLN---LLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~---lLkk--~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++. .+.. .++|+|||+||+|+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 9999999999999999999873222211 1222 2222 368999999999985
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.59 E-value=1.6e-15 Score=150.40 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.... .+.++..+... +. .......|.||||||++.|.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~---------~~--~~~~~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSAN---------VA--VDGQIVNLGLWDTAGQEDYS 71 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCSSCCCEEEE---------EE--CSSCEEEEEEECCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceeEEEE---------EE--ECCEEEEEEEEECCCcHHHH
Confidence 45578999999999999999999976654221 11222111100 00 00111348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||+++......+ .++..+... ++|+|||+||+|+.
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 9999999999999999999874333332 244444443 79999999999974
No 96
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.59 E-value=1.5e-15 Score=159.25 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh--
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n-- 872 (923)
++|+|+|++|||||||+|+|++.++..+..+++|.......+. +....+.||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~----------------~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFL----------------LGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEE----------------ETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEE----------------ECCeEEEEEeCCCcccccccc
Confidence 4699999999999999999998776555555554332221111 1122489999999987754
Q ss_pred --------HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 --------LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 --------lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++..++ ..+|+||+|||+++ ......++..+...++|+|||+||+|++
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 344556 88999999999987 2344455666777799999999999974
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.59 E-value=4.1e-15 Score=147.64 Aligned_cols=114 Identities=24% Similarity=0.310 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.... ..++..+. .+. +.. .....|.||||||++.|.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~--~~~----------~~~---~~~~~~~i~Dt~G~~~~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSA--IYK----------VNN---NRGNSLTLIDLPGHESLR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEE--EEE----------CSS---TTCCEEEEEECCCCHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcceeeE--EEE----------ecC---CCccEEEEEECCCChhHH
Confidence 34578999999999999999999986654221 11111110 000 000 002459999999999998
Q ss_pred h-HHHhhccCCCEEEEEEeCCCCCCH---hHHHHHH-HHH-----hcCCcEEEEEeCCCcC
Q 002428 872 N-LRSRGSGLCDIAILVVDIMHGLEP---QTIESLN-LLK-----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 n-lrs~~ls~aDiVILVVDas~gle~---qtiEsL~-lLk-----k~~iP~IVVLNKIDLL 922 (923)
. ++..+++.+|++|||||+++ +.. ....+|. ++. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 7 78888999999999999986 211 1122222 221 2368999999999985
No 98
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=148.38 Aligned_cols=117 Identities=21% Similarity=0.134 Sum_probs=79.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|.+|+||||||++|++..+..... +.++..+..... .......|.||||||+..|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~-----------~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD----PTVENTYSKIVT-----------LGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC----CCSEEEEEEEEC---------------CEEEEEEEECCCCTT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC----CccceEEEEEEE-----------ECCEEEEEEEEECCCccch
Confidence 3566789999999999999999999877653221 222211111000 0111234899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 99999999999999999999874332222 23333333 378999999999974
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.59 E-value=4.4e-15 Score=143.68 Aligned_cols=112 Identities=22% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+. . +.++++..+.. + .+....+.||||||+..|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~----~~~t~~~~~~~----------~----~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVD-T----ISPTLGFNIKT----------L----EHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCS-S----CCCCSSEEEEE----------E----EETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC-c----ccccCccceEE----------E----EECCEEEEEEECCCCHhHH
Confidence 34578999999999999999999976521 1 12222211110 0 1122458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...... .++..+.. .++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 9999999999999999999885433332 23333322 478999999999984
No 100
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.59 E-value=2.9e-15 Score=175.32 Aligned_cols=124 Identities=30% Similarity=0.466 Sum_probs=83.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeecc-----ccccC-----CCC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELKA-----NATLK-----VPG 858 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~~-----~~~~k-----~~~ 858 (923)
.++|+ |+|+||+++|||||+++|+..... ++. .++..++.... ..+.+++.. ...|. .+.
T Consensus 4 ~~irn--I~IiGh~d~GKTTLi~rLl~~tg~------i~~~~~~~~~~D~~~-~ErerGITI~~~~~~~~~~~~dg~~~~ 74 (600)
T 2ywe_A 4 KNVRN--FCIIAHVDHGKSTLADRLLEYTGA------ISEREKREQLLDTLD-VERERGITVKMQAVRMFYKAKDGNTYK 74 (600)
T ss_dssp GGEEE--EEEECC--CCHHHHHHHHHHHHTC------------------------------CCCCSEEEEEECTTSCEEE
T ss_pred cCceE--EEEECCCCCCHHHHHHHHHhccCC------cccccccccccccch-hhhcccceeeeeEEEEEEEcCCCCeEE
Confidence 34555 999999999999999999862111 000 00111111100 000011110 01111 145
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|+|||||||.+|...+.++++.||++|||||++++...++..+|.++...++|+|||+||||+.
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP 138 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc
Confidence 8999999999999999999999999999999999999999999998888999999999999985
No 101
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.59 E-value=1.3e-15 Score=172.68 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=49.2
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-------CHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-------e~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|+|||||||..|..++..+++.+|++|||||++++. ..++.+++.++...++| +|||+||||+.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 45899999999999999999999999999999999875 36888998888888998 99999999984
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=2.2e-15 Score=145.73 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|||++|+|||||+++|++..+.....++++.......+ .+....+.||||||+..|
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF----------------EYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE----------------EETTEEEEEEECCCCSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEE----------------EeCCcEEEEEECCCcCcc
Confidence 4566789999999999999999999865433322222221111111 111234899999999877
Q ss_pred h------hHHHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 871 T------NLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~------nlrs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. .++..++. .++++|+|+|+++ ......++..+...++|+|||+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 4 34445554 5999999999875 1233445566667789999999999973
No 103
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.59 E-value=1.2e-15 Score=151.83 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|||++|+||||||++|++..+... +.+.++..+.......................|.||||||+..|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 356799999999999999999998765422 2222222111100000000000000000123499999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+. ++..+.. .++|+|||+||+|+.
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 9999999999999999998743332222 2222222 468999999999984
No 104
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=1.6e-15 Score=175.05 Aligned_cols=128 Identities=27% Similarity=0.349 Sum_probs=87.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce-----eecceeeecccccccceeee-ccccccCCCCEEEEeCCCCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT-----~qIgat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhE 868 (923)
++|+||||+|+|||||+++|+.........+.+. ......+++....+..+... .....+....|+|||||||.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 3499999999999999999973221100000000 00000000000000000000 00112234569999999999
Q ss_pred chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|...+.++++.+|++|||||+++++..++..+|..+...++|+|||+||||+.
T Consensus 94 df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 94 DFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 999999999999999999999999999999999999999999999999999984
No 105
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.58 E-value=1.2e-15 Score=149.11 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--ccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llgt--nVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.+.++|+|+|++|+|||||+++|++. .+... +.++++..+.. ..+..........|.||||||+..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~--------~~~~~~~~~~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVV--------APVTIPDTTVSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEEC--------------------------------------C--------EEEECTTSSEEEEEEEEETTTTHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEE--------EEEEECCcccEEEEEEEECCCcHH
Confidence 34568999999999999999999876 33311 11111111100 000000000013489999999999
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh------cCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk------~~iP~IVVLNKIDLL 922 (923)
|..++..++..+|++|||||++++.....+ .++..+.. .++|+|||+||+|+.
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 999999999999999999999875432222 33344433 578999999999984
No 106
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.58 E-value=3.6e-15 Score=140.75 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+|||||+++|++..+.. ..+.++.++..... + ......+.||||||+..|..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~-------~----~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-----EAEAAGHTYDRSIV-------V----DGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------CEEEEEEE-------E----TTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-----CCCccccceEEEEE-------E----CCEEEEEEEEECCCCccchhh
Confidence 4679999999999999999998655431 11222222211100 0 011134899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 99999999999999999874332222 23333333 368999999999985
No 107
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.58 E-value=9.6e-16 Score=173.42 Aligned_cols=113 Identities=29% Similarity=0.319 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--cccc-------------CC----------------CCcceeecceeeecccccc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT--NVQE-------------GE----------------AGGITQQIGATYFPAENIR 842 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt--nVq~-------------ge----------------agGIT~qIgat~~p~e~i~ 842 (923)
.++|+|+||+++|||||+++|++. .+.. +. ..|+|..+...+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~------- 79 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK------- 79 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE-------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE-------
Confidence 467999999999999999999863 1110 00 011111111111
Q ss_pred cceeeeccccccCCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCH-------hHHHHHHHHHhcCCc-EEE
Q 002428 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP-------QTIESLNLLKMRNTE-FIV 914 (923)
Q Consensus 843 ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~-------qtiEsL~lLkk~~iP-~IV 914 (923)
..+....|+|||||||..|...+..+++.+|++|||||++++..+ ++.+++.++...++| +||
T Consensus 80 ---------~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iiv 150 (458)
T 1f60_A 80 ---------FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIV 150 (458)
T ss_dssp ---------EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred ---------EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEE
Confidence 112234599999999999999999999999999999999986544 788888888888887 999
Q ss_pred EEeCCCcC
Q 002428 915 ALNKVRFS 922 (923)
Q Consensus 915 VLNKIDLL 922 (923)
|+||||++
T Consensus 151 viNK~Dl~ 158 (458)
T 1f60_A 151 AVNKMDSV 158 (458)
T ss_dssp EEECGGGG
T ss_pred EEEccccc
Confidence 99999985
No 108
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.58 E-value=2.3e-15 Score=176.18 Aligned_cols=123 Identities=32% Similarity=0.442 Sum_probs=81.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-ecceeeecccccccceeeecc-----ccccC-----CCCE
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENIRERTRELKA-----NATLK-----VPGL 859 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-qIgat~~p~e~i~ekt~~I~~-----~~~~k-----~~~L 859 (923)
++|+ |+||||+++|||||+++|+..... ++. .++..+..... ..+.+++.. ...|. .+.|
T Consensus 3 ~irn--I~IiGh~d~GKTTLi~rLl~~tg~------i~~~~~~~~~~D~~~-~ErerGiTi~~~~~~~~~~~~~g~~~~l 73 (599)
T 3cb4_D 3 NIRN--FSIIAHIDHGKSTLSDRIIQICGG------LSDREMEAQVLDSMD-LERERGITIKAQSVTLDYKASDGETYQL 73 (599)
T ss_dssp TEEE--EEEECCC----CCHHHHHHHHTTC---------------------------------CEEEEEEECTTSCEEEE
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHhcCC------cccccccccccccch-hhhcccceeeeeEEEEEEecCCCCeEEE
Confidence 3555 999999999999999999862211 000 01111111100 000011110 01111 2458
Q ss_pred EEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 860 ~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+|||||||..|...+.++++.||++|||||+++++..++..+|..+...++|+|||+||||+.
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP 136 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc
Confidence 999999999999999999999999999999999999999999998888899999999999985
No 109
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.58 E-value=9.6e-16 Score=153.49 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=80.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|+...+... +.+.++.++...... .......|.||||||+..|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----~~~t~~~~~~~~~~~----------~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFH----------TNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----EETTTTEEEEEEEEE----------ETTEEEEEEEEEECSGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceeEEEEEEE----------ECCEEEEEEEEeCCChHHH
Confidence 45567899999999999999999765433211 122222222211100 0111234899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh--cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..++..+++.+|++|||||++++.....+. ++..+.. .++|+|||+||+|+.
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 999999999999999999999854333332 3333333 278999999999984
No 110
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-15 Score=151.78 Aligned_cols=115 Identities=20% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++++||||||++|++..+.....+ .++..+... .+.. ......|.||||||+..|..+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~----t~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS----TIGVEFATR--------TLEI--EGKRIKAQIWDTAGQERYRAI 78 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC----------CCSEEEE--------EEEE--TTEEEEEEEECCTTTTTTTCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC----cccceeEEE--------EEEE--CCEEEEEEEEECCCccchhhh
Confidence 46799999999999999999998766432211 111111110 0000 001124899999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
+..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999999999999875433332 23333333 378999999999984
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=7.1e-16 Score=150.80 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..++|+|+|++|+||||||++|++..+... +.+.++..+... .+ ........|.||||||+..|..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~--------~~--~~~~~~~~~~i~Dt~G~~~~~~ 87 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPA----FVSTVGIDFKVK--------TV--YRHEKRVKLQIWDTAGQERYRT 87 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCC----EEEEETTTEEEE--------EE--EETTTTEEEEEECHHHHHHCHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcc----cCCCeeeEEEEE--------EE--EECCEEEEEEEEeCCChHHHHH
Confidence 456799999999999999999997654322 122222111110 00 0011123489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++...... ..++..+.. .++|+|||+||+|+.
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999999999999999987432222 223334433 478999999999974
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.58 E-value=1.3e-15 Score=151.54 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
...++|+|+|++|+|||||+++|++..+... +...++..+....... .......|.||||||+..|.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLD---------DQGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEB---------TTSCEEEEEEEEECSGGGTS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEe---------CCCcEEEEEEEecCCchhhc
Confidence 3456799999999999999999987655321 1222222221111000 00001248999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH----HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti----EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++.....+ ..+..+...++|+|||+||+|+.
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 8999999999999999999985443333 22223334468999999999985
No 113
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=150.65 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|||.+|+|||||+++|++..+..... +.++..+..... + ......|.||||||++.|
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~-------~----~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYT----PTVFERYMVNLQ-------V----KGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------C----CCCCEEEEEEEE-------E----TTEEEEEEEEEC------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CccceeEEEEEE-------E----CCEEEEEEEEECCCchhh
Confidence 3456789999999999999999999866542211 111111110000 0 001124899999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 99999999999999999999874333332 23334433 378999999999985
No 114
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.57 E-value=1.1e-14 Score=142.01 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+. .+.++++..+.. + .+....+.||||||++.|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g~~~~~----------~----~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQGFNIKS----------V----QSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETTEEEEE----------E----EETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCCeEEEE----------E----EECCEEEEEEECCCCHHHH
Confidence 34577999999999999999999875432 123333321110 1 1112358999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH-H---hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL-K---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lL-k---k~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+ . ..++|+|||+||+|+.
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 9999999999999999999875433322 233333 2 2478999999999984
No 115
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=145.93 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=74.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
...+.++|+|||.+|+|||||+++|++..+... +.++++..+..... + ......|.||||||++.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~----~~~t~~~~~~~~~~-------~----~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISE----YDPNLEDTYSSEET-------V----DHQPVHLRVMDTADLDT 81 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSC----CCTTCCEEEEEEEE-------E----TTEEEEEEEEECCC---
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcc----cCCCccceeeEEEE-------E----CCEEEEEEEEECCCCCc
Confidence 346667899999999999999999998765432 12222222211000 0 11113489999999988
Q ss_pred hhhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh------cCCcEEEEEeCCCcC
Q 002428 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM------RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 f~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk------~~iP~IVVLNKIDLL 922 (923)
|..+ ..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 82 ~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 82 PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred chhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 8765 5688999999999999874332222 23333332 489999999999984
No 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.57 E-value=5.1e-15 Score=145.33 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=76.0
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC
Q 002428 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (923)
Q Consensus 787 ~~~enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG 866 (923)
..+..++.++|+|+|.+|+|||||+++|++..+.....+ .. ..+... ..+ ......|.||||||
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~----t~-~~~~~~-------~~~----~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP----EG-GRFKKE-------IVV----DGQSYLLLIRDEGG 76 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT----TC-EEEEEE-------EEE----TTEEEEEEEEECSS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC----Cc-ceEEEE-------EEE----CCEEEEEEEEECCC
Confidence 334567788999999999999999999998766432111 11 111100 000 00112388999999
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gle~qt-iEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
++.|. +++.+|++|||||+++....+. ..++..+.. .++|+|||+||+|+
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 98876 6778999999999998544444 234444444 36899999999998
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.57 E-value=4.4e-15 Score=155.77 Aligned_cols=112 Identities=23% Similarity=0.276 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+|||||+|+|++.++..+..+|+|.......+. +....|.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~----------------~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFT----------------YKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEE----------------ETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCccCC
Confidence 456799999999999999999998776555444444332211111 1123489999999987754
Q ss_pred ------HHHhhc--cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ------LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ------lrs~~l--s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+...++ ..+|+||+|||+++. .....++..+...++|+|||+||+|+.
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 223444 589999999999873 334456667777899999999999973
No 118
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.57 E-value=4e-15 Score=171.69 Aligned_cols=124 Identities=23% Similarity=0.355 Sum_probs=85.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee-----ecceeeecccccccceeeecc-----ccccCCCCEEEEeC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-----QIGATYFPAENIRERTRELKA-----NATLKVPGLLVIDT 864 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~-----qIgat~~p~e~i~ekt~~I~~-----~~~~k~~~L~IIDT 864 (923)
++|+|+||+|+|||||+++|+.........+.+.. .....+.+.. ..+++.. ...+....|+||||
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E----~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEME----KQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhc----ccCCcceeeeEEEEEECCeEEEEEEC
Confidence 45999999999999999999863211111010000 0000111111 1111111 12233456999999
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|||..|...+.++++.+|++|||||+++++..++..++.++...++|+|||+||+|+.
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 9999999999999999999999999999999999999999988899999999999985
No 119
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.57 E-value=5.3e-15 Score=148.33 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|||.+|+|||||+++|++..+..... +.++..+.. .+. .......|.||||||++.|.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----~t~~~~~~~---------~~~--~~~~~~~l~i~Dt~G~~~~~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTA---------SFE--IDTQRIELSLWDTSGSPYYD 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEE---------EEE--SSSSEEEEEEEEECCSGGGT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----CccceeEEE---------EEE--ECCEEEEEEEEeCCCcHhhh
Confidence 345679999999999999999999876643211 222221110 000 01112348999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 9999999999999999999874333332 23334433 378999999999984
No 120
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.57 E-value=3.8e-15 Score=141.00 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh-H
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-L 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n-l 873 (923)
++|+|+|++|+|||||+++|++..+........+....... +. .......+.||||||+..+.. +
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~~~~i~D~~g~~~~~~~~ 68 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERR------------IM--VDKEEVTLIVYDIWEQGDAGGWL 68 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEE------------EE--ETTEEEEEEEECCCCC-------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEE------------EE--ECCeEEEEEEEECCCccccchhh
Confidence 46999999999999999999875543221111111110000 00 001113488999999998876 6
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 66778899999999999874322222 22333322 278999999999974
No 121
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=4.6e-15 Score=158.90 Aligned_cols=115 Identities=24% Similarity=0.323 Sum_probs=83.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE- 868 (923)
.+|.++|+|||++|+|||||+|+|++..+.. ...+++|. ....++ .......|+||||||+.
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-------------~~~~gi---~~~~~~~i~~iDTpG~~~ 68 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-------------HRIVGI---HTEGAYQAIYVDTPGLHM 68 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-------------SCEEEE---EEETTEEEEEESSSSCCH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-------------eeEEEE---EEECCeeEEEEECcCCCc
Confidence 4677889999999999999999999876532 11111111 111111 11122458999999987
Q ss_pred c--------hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 S--------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 s--------f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. |...+..++..+|++|||||+++ +...+..++..+...++|+|||+||+|+.
T Consensus 69 ~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp HHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred cchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 2 22334567788999999999988 88888888888887789999999999985
No 122
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=149.26 Aligned_cols=115 Identities=22% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|+|++|+||||||++|++..+.....+.++..+....+.. ......|.||||||+..|..+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~l~l~Dt~G~~~~~~~ 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV--------------GGKTVKLQIWDTAGQERFRSV 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE--------------TTEEEEEEEECCTTHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE--------------CCeeeEEEEEcCCCcHhHHHH
Confidence 467999999999999999999987654322222211111111100 001134899999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
+..++..+|++|||||+++......+ .++..+. ..++|+|||+||+|+.
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 88999999999999999874333222 2333332 3478999999999984
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=8.2e-15 Score=145.86 Aligned_cols=111 Identities=23% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+... ...+.+.++.. +....|.||||||+..|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-------------------YDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-------------------GGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-------------------eeCceEEEEECCCcHHHH
Confidence 4567899999999999999999998654321 00011111100 123459999999999998
Q ss_pred hHHHhhccC----CCEEEEEEeCC-CCCC-HhHHHHHH-HHH------hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGL----CDIAILVVDIM-HGLE-PQTIESLN-LLK------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~----aDiVILVVDas-~gle-~qtiEsL~-lLk------k~~iP~IVVLNKIDLL 922 (923)
.++..++.. +|++|||||++ .... .....++. ++. ..++|+|||+||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 888877766 89999999998 3222 22222332 222 2479999999999985
No 124
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.56 E-value=4.4e-15 Score=164.16 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlrs 875 (923)
+|+|+||+++|||||+++|+ ..++|..++..++.. ....|+|||||||..|...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~----------------~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK----------------EGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS----------------SSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec----------------CCeEEEEEECCChHHHHHHHH
Confidence 79999999999999999998 234555544333221 123499999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEe-CCCc
Q 002428 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALN-KVRF 921 (923)
Q Consensus 876 ~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLN-KIDL 921 (923)
.+++.+|++||||| ..+...++.+++.++...++|. |||+| |||+
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 99999999999999 8899999999999999899998 99999 9997
No 125
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.56 E-value=3.5e-15 Score=167.43 Aligned_cols=129 Identities=30% Similarity=0.387 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--ccccCCCCcc---eeecce---------eeecccccccceeeec-cccccCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGI---TQQIGA---------TYFPAENIRERTRELK-ANATLKVPG 858 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt--nVq~geagGI---T~qIga---------t~~p~e~i~ekt~~I~-~~~~~k~~~ 858 (923)
.++|+|+||+++|||||+++|++. .+.......+ ....|. .+.+....+..+..+. ....+....
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 356999999999999999999863 1110000000 000000 0000000000000000 011223356
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-cEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-------le~qtiEsL~lLkk~~i-P~IVVLNKIDLL 922 (923)
|+|||||||..|...+..+++.+|++|||||++++ +..++.+++.++...++ |+|||+||||+.
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 99999999999999999999999999999999997 77788999888888887 599999999985
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.56 E-value=1.3e-14 Score=149.93 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=76.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCC-Cc-ceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GG-ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~gea-gG-IT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE 868 (923)
..+.++|+|+|++|+|||||+++|++..+..... +. +|..+.... ..+....|+||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------GSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE----------------EEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE----------------EEeCCCEEEEEECcCCC
Confidence 3456789999999999999999999876432111 11 121111100 01122359999999987
Q ss_pred chh-----------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCcEEEEEe-CCCcC
Q 002428 869 SFT-----------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALN-KVRFS 922 (923)
Q Consensus 869 sf~-----------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-----~iP~IVVLN-KIDLL 922 (923)
.+. ..+..+++.+|+||||||+++ +......++..+... ..|+|||+| |+|+.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 652 223346789999999999985 777666666665554 568777777 99984
No 127
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.56 E-value=9.7e-15 Score=143.99 Aligned_cols=112 Identities=20% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.. ..++++..+. . ..+....|.||||||++.|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-----~~~t~~~~~~----------~----~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVE----------T----VEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-----EEEETTEEEE----------E----EEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-----cCCcCceeEE----------E----EEECCEEEEEEECCCCHhHH
Confidence 456789999999999999999998755431 1222221110 0 11123459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...... .++..+.. .++|+|||+||+|+.
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 9999999999999999999875333322 23333332 379999999999984
No 128
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=4.8e-15 Score=142.41 Aligned_cols=112 Identities=23% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.. ..++++.... .+ .+....+.||||||+..|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~----------~~----~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-----TKPTIGFNVE----------TL----SYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-----ECSSTTCCEE----------EE----EETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc-----cCCcCccceE----------EE----EECCEEEEEEECCCCHhHH
Confidence 456789999999999999999998755421 1112221100 01 1122458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+. ..++|+|||+||+|+.
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 8999999999999999999876543332 3344333 2578999999999984
No 129
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.56 E-value=8.4e-15 Score=142.28 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..+|+|+|++|+|||||+++|++..+. ....++++..+.... + .+....+.||||||+..+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~------------~----~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREH------------I----HIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEE------------E----EETTEEEEEEECCCCSCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEE------------E----EECCeEEEEEECCCcccchh
Confidence 357999999999999999999976532 111222221110000 0 11112389999999865321
Q ss_pred --------HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc---CCcEEEEEeCCCc
Q 002428 873 --------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR---NTEFIVALNKVRF 921 (923)
Q Consensus 873 --------lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~---~iP~IVVLNKIDL 921 (923)
....+++.+|++|||||++++.......++..+... ++|+|||+||+|+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccC
Confidence 122467899999999999987665555555544432 6899999999997
No 130
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.56 E-value=3.2e-15 Score=145.27 Aligned_cols=112 Identities=21% Similarity=0.161 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|+...+.. ..++++..+ ..+ .+....+.||||||++.|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~----------~~~----~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-----TVPTVGVNL----------ETL----QYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-----ECSSTTCCE----------EEE----EETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-----cCCCCceEE----------EEE----EECCEEEEEEECCCCHhHH
Confidence 346789999999999999999997655421 111111100 001 1123458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||+++....... .++..+.. .++|+|||+||+|+.
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 8888999999999999999986443332 23333332 378999999999985
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.56 E-value=1.8e-14 Score=141.89 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+.. +.++++.... .+ .+....+.||||||+..|.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~----------~~----~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSE----------EL----AIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEE----------EE----EETTEEEEEEECCCSGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeE----------EE----EECCEEEEEEECCCCHHHH
Confidence 455689999999999999999999866531 1112221110 00 1112358999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||++++...... .++..+. ..++|+|||+||+|+.
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 9999999999999999999985433322 2333332 2478999999999984
No 132
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.4e-14 Score=142.08 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=76.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
..+.++|+|+|++|+|||||+++|++..+.....+ .++..+.... .+ ......|.||||||+..
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~----t~~~~~~~~~-------~~----~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP----TLESTYRHQA-------TI----DDEVVSMEILDTAGQED- 88 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT----TCCEEEEEEE-------EE----TTEEEEEEEEECCCCCC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCC----CCCceEEEEE-------EE----CCEEEEEEEEECCCCCc-
Confidence 34567899999999999999999998765432111 1111111000 00 01113489999999987
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
..++..++..+|++|||||+++......+ .++..+ ...++|+|||+||+|+.
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 67778889999999999999873222221 222222 23579999999999984
No 133
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.55 E-value=6.3e-16 Score=180.45 Aligned_cols=129 Identities=25% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCC-----Ccceeecce-----eeecccccccceeeeccc-----cccCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----GGITQQIGA-----TYFPAENIRERTRELKAN-----ATLKVPG 858 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~gea-----gGIT~qIga-----t~~p~e~i~ekt~~I~~~-----~~~k~~~ 858 (923)
.++|+||||+++|||||+++|++........ ......+|. .++.......+.+++... ..+....
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 3569999999999999999997522110000 000000010 000000000111111111 1222356
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC-----C--CHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g-----l--e~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
|+|||||||..|..++..+++.||++|||||++++ + ..++.+++.++...++| +|||+||||++
T Consensus 257 i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp --CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999999999975 4 88999999999999997 99999999985
No 134
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.55 E-value=1.1e-14 Score=144.54 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
++.++|+|+|++|+|||||+++|++..+.. +.++++... . .+ .+....+.||||||+..|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----~~~t~~~~~--------~--~~----~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-----HVPTLHPTS--------E--EL----TIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSC--------E--EE----EETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCCCCcee--------E--EE----EECCEEEEEEECCCcHhhH
Confidence 556789999999999999999998765431 111111110 0 01 1112358999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH----hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti-EsL~lLk----k~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|||||++++...... .++..+. ..++|+|||+||+|+.
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 9999999999999999999875433322 2333332 2479999999999984
No 135
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.55 E-value=2.2e-14 Score=151.58 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=81.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecc---eeeecc------------------cccc-------
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG---ATYFPA------------------ENIR------- 842 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIg---at~~p~------------------e~i~------- 842 (923)
.+..|+|+|+|++|+|||||||+|++..+.....+.+|..++ .+..+. ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 466788999999999999999999998763221111222111 111000 0000
Q ss_pred ------ccee----eecc---c---cccCCCCEEEEeCCCCcc-------------hhhHHHhhccCCCEEEEEEeC-CC
Q 002428 843 ------ERTR----ELKA---N---ATLKVPGLLVIDTPGHES-------------FTNLRSRGSGLCDIAILVVDI-MH 892 (923)
Q Consensus 843 ------ekt~----~I~~---~---~~~k~~~L~IIDTPGhEs-------------f~nlrs~~ls~aDiVILVVDa-s~ 892 (923)
..+. ++.. . .......|+||||||+.. |..++..++..+|++|||||+ ..
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 0000 0000 0 011235799999999754 456677889999999999997 44
Q ss_pred CCCHhH-HHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 893 GLEPQT-IESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 893 gle~qt-iEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.... ..++..+...++|+|||+||+|++
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~ 211 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLM 211 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSS
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccC
Confidence 554333 466777777789999999999985
No 136
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.55 E-value=1.3e-14 Score=172.59 Aligned_cols=129 Identities=26% Similarity=0.243 Sum_probs=88.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecc---cccccceeeec-cccccCC-------CC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA---ENIRERTRELK-ANATLKV-------PG 858 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~---e~i~ekt~~I~-~~~~~k~-------~~ 858 (923)
.++|+ |+||||+|+|||||+++|+.........+.+.. +.++..+ ...+..+.... ....+.. +.
T Consensus 8 ~~~~~--I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~--g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 83 (704)
T 2rdo_7 8 ARYRN--IGISAHIDAGKTTTTERILFYTGVNHKIGEVHD--GAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHR 83 (704)
T ss_pred ccccE--EEEECCCCCCHHHHHHHHHHhcCCcccccccCC--CceeecChhhHHhcCceeeeceEEEEECCccccCCcee
Confidence 34444 999999999999999999853211000000000 0111110 00000000000 0011111 56
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|+|||||||.+|...+.++++.||++|||||++.+...++..+|.++...++|+|||+||||+.
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred EEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 9999999999999999999999999999999999999999999999888899999999999985
No 137
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.54 E-value=1.4e-14 Score=150.58 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=75.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCC--cceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC-
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG--GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geag--GIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh- 867 (923)
....++|+|||.+|+|||||+|+|++..+...... ++|..+.... ..+....|+||||||+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------~~~~~~~i~liDTPG~~ 81 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------RRWDKCHVEVVDTPDIF 81 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE----------------EEETTEEEEEEECCSCS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE----------------EEECCcEEEEEECCCCC
Confidence 34567899999999999999999998776432211 1111111000 0112234899999997
Q ss_pred -------cchhhHHHhhc----cCCCEEEEEEeCCCCCCHhHHHHHHHHHhc------CCcEEEEEeCCCcC
Q 002428 868 -------ESFTNLRSRGS----GLCDIAILVVDIMHGLEPQTIESLNLLKMR------NTEFIVALNKVRFS 922 (923)
Q Consensus 868 -------Esf~nlrs~~l----s~aDiVILVVDas~gle~qtiEsL~lLkk~------~iP~IVVLNKIDLL 922 (923)
..+...+.+++ ..+|+||||||+++ +......++..+... +.|+|||+||+|+.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 82 SSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp STTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 33444444444 89999999999985 666666666655543 78999999999984
No 138
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.54 E-value=6.3e-16 Score=152.41 Aligned_cols=116 Identities=19% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|++|+||||||++|++..+.....++++..+....+... .....|.||||||+..|..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD--------------GKTIKLQIWDTAGQERFRT 97 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET--------------TEEEEEEEECCTTCTTCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC--------------CEEEEEEEEECCCcHhHHH
Confidence 45679999999999999999998766543211111111111111100 0112489999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHhc---CCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk~---~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||+++......+ .++..+... ++|+|||+||+|+.
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 999999999999999999985443333 233444433 68999999999984
No 139
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.54 E-value=1.2e-14 Score=139.29 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=73.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|+|.+|+|||||+++|++..+.. ..++++..+.... .+ ......|.||||||++.
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~-------~~----~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-----LEKTESEQYKKEM-------LV----DGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-----CSSCSSSEEEEEE-------EE----TTEEEEEEEEECSSSCC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----cCCCcceeEEEEE-------EE----CCEEEEEEEEECCCCch-
Confidence 3566789999999999999999999876643 1122222211100 00 00112489999999976
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHH----HHHHHh---cCCcEEEEEeCCCc
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIES----LNLLKM---RNTEFIVALNKVRF 921 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEs----L~lLkk---~~iP~IVVLNKIDL 921 (923)
..+++.+|++|||||+++......+.. +..+.. .++|+|||+||+|+
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 356778999999999987543333332 222332 36899999999998
No 140
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.53 E-value=1.6e-14 Score=153.16 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh--
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~-- 871 (923)
.++|+|+|++|||||||+|+|++..+..+..+|+|.......+ .+ ...|.||||||+..|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~----------------~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV----------------KK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC----------------TT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE----------------ec-CCeEEEEECCCcCccCCC
Confidence 3569999999999999999999876554544444332211111 11 3469999999998875
Q ss_pred ----hHHHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 ----NLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 ----nlrs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..++. .+|++|+|||+++. .....++..+...++|+|||+||+|+.
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 34455554 69999999999872 233445556666799999999999973
No 141
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.53 E-value=1.3e-14 Score=171.99 Aligned_cols=128 Identities=26% Similarity=0.249 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceee-cceeeecccccccceeeec-cccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-IGATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~q-Igat~~p~e~i~ekt~~I~-~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
++|+|+||+|+|||||+++|+.........+.+... ....+.+....+..+.... ....+....|+|||||||..|..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 92 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTI 92 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHH
Confidence 459999999999999999998421110000000000 0000100000000000000 01122345699999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++++.||++|||||++.+...++..+|..+...++|+|||+||+|+.
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999988999999999999985
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=1.4e-14 Score=162.30 Aligned_cols=113 Identities=20% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc----
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE---- 868 (923)
.++|+|||.+|+|||||+|+|++..+.. ...+|+|..... ....+....|.||||||+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~----------------~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY----------------SSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEE----------------EECTTCSSCCEEEC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEE----------------EEEEECCceEEEEECCCCCCcch
Confidence 4789999999999999999998765431 122222221110 0112233459999999985
Q ss_pred ----chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 869 ----SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 869 ----sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|..++..++..+|+||||||+.+++......++.+++..++|+|||+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 566677788999999999999999999888888888888899999999999974
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=146.52 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCC--cceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG--GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geag--GIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs 869 (923)
.+.++|+|||++|+|||||+|+|++..+.....+ ++|..+....+ .+....|.||||||+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS----------------SWKETELVVVDTPGIFD 90 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE----------------EETTEEEEEEECCSCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE----------------EeCCceEEEEECCCccC
Confidence 4456799999999999999999998776533222 22221111111 11123489999999543
Q ss_pred -----------hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHH-----hcCCcEEEEEeCCCcC
Q 002428 870 -----------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -----------f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLk-----k~~iP~IVVLNKIDLL 922 (923)
+...+..++..+|++|||||+++ +......++..+. ....|+|||+||+|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~ 158 (239)
T 3lxx_A 91 TEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDL 158 (239)
T ss_dssp ----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC
Confidence 34445556678899999999975 4444444444332 2346999999999985
No 144
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=144.26 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..++|+|||.+|+||||||++|++..+.....++++..+....+ .+ ......|.||||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~----------~~----~~~~~~l~i~Dt~g~~~~~~ 87 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI----------MV----DKEEVTLVVYDIWEQGDAGG 87 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEE----------EE----TTEEEEEEEECCCCCSGGGH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEE----------EE----CCEEEEEEEEecCCCccchh
Confidence 34679999999999999999997543321111111111000000 00 00112488999999988765
Q ss_pred -HHHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh----cCCcEEEEEeCCCcC
Q 002428 873 -LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 -lrs~~ls~aDiVILVVDas~gle~qti-EsL~lLkk----~~iP~IVVLNKIDLL 922 (923)
++..+++.+|++|||||+++......+ .++..+.. .++|+|||+||+|+.
T Consensus 88 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 88 WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 777888999999999999874332222 23333332 378999999999984
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.53 E-value=3.5e-14 Score=159.20 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
|+|+|||.+|||||||+|+|++..+. ....+|+|.......+ .+....|.||||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~----------------~~~~~~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV----------------EWYGKTFKLVDTCGVFDNPQD 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE----------------EETTEEEEEEECTTTTSSGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEE----------------EECCeEEEEEECCCccccccc
Confidence 57999999999999999999986643 2233333332211111 11122489999999764
Q ss_pred -----hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -----f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..++..++..+|+||||||++.++......+...++..++|+|||+||||+.
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 33456678999999999999999988877777777777799999999999973
No 146
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=8.4e-15 Score=164.07 Aligned_cols=114 Identities=20% Similarity=0.350 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC----
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh---- 867 (923)
..++|+|||++|+|||||+|+|++..+. .+...++|.......+ .+....+.||||||+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~----------------~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF----------------TYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEE----------------EETTEEEEETTHHHHTCBT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEE----------------EECCeEEEEEECCCcCcCc
Confidence 3567999999999999999999986643 2333333332211111 111224899999997
Q ss_pred ------cchhhHHH-hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 ------Esf~nlrs-~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++. .++..+|+||||||++++...++..++..+...++|+|||+||+|++
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 55555544 58889999999999999999999988888888899999999999985
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.9e-15 Score=141.98 Aligned_cols=111 Identities=23% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||+++|++..+... .....+.++. .+....|.||||||+..|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA-------------------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccCCCceee-------------------eecCCeEEEEECCCCchHH
Confidence 4567899999999999999999998654320 0000111100 0123468999999998887
Q ss_pred hHHHhhccC----CCEEEEEEeCC-CCCCH-hHHHHHHHHH-------hcCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGL----CDIAILVVDIM-HGLEP-QTIESLNLLK-------MRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~----aDiVILVVDas-~gle~-qtiEsL~lLk-------k~~iP~IVVLNKIDLL 922 (923)
..+..++.. +|++|||||++ ..... ....++..+. ..++|+|||+||+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 666666654 89999999998 31111 1112222221 1479999999999985
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=1.7e-14 Score=162.48 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=83.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC--
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-- 866 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG-- 866 (923)
.+|+.++|+|||.+|||||||+|+|++..+. ....+|+|... . .....+....|.||||||
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~------~----------~~~~~~~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR------I----------YSSAEWLNYDFNLIDTGGID 82 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------C------E----------EEECTTCSSCCEEECCCC--
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeE------E----------EEEEEECCceEEEEECCCCC
Confidence 4588899999999999999999999886543 11112222111 0 011122334699999999
Q ss_pred ------CcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 ------HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 ------hEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+..++..++..+|+||||||+..++......++.+++..++|+|||+||+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 83 IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp ----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 55666777888999999999999999999999988899988899999999999974
No 149
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.50 E-value=5.8e-14 Score=135.30 Aligned_cols=108 Identities=27% Similarity=0.352 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC--------
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-------- 866 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG-------- 866 (923)
++|+|+|++|+|||||+++|++..+.....++++..+.. + ....+.||||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--------------~------~~~~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--------------I------EWKNHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--------------E------EETTEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--------------E------ecCCEEEEECCCccccccCC
Confidence 469999999999999999999877654433333221110 0 001589999999
Q ss_pred ---CcchhhHHHhhc----cCCCEEEEEEeCCCC-----------CCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 ---HESFTNLRSRGS----GLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 ---hEsf~nlrs~~l----s~aDiVILVVDas~g-----------le~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.|..++..++ ..+++|++|+|.... +..+...++..+...++|+|||+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 445555555444 456778888886541 11222334455666789999999999985
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=150.02 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|.+|+|||||+++|++..+.... .+.++..+... + ........|.||||||+..|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~---------~--~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSAN---------V--MVDGKPVNLGLWDTAGQEDYD 92 (204)
Confidence 45678999999999999999999876553221 11111111000 0 001112347899999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
.++..++..+|++|||||++++...... .++..+... ++|+|||+||+|+.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 9999999999999999999875444433 344444444 78999999999984
No 151
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.50 E-value=2.3e-14 Score=170.13 Aligned_cols=128 Identities=27% Similarity=0.248 Sum_probs=85.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceee-cceeeecccccccceeee-ccccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-IGATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~q-Igat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
++|+|+|++|+|||||+++|+.........+.+... ....+.+....+..+... .....+....|+|||||||..|..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 90 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTV 90 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHH
Confidence 349999999999999999998521110000001000 001111111000000000 011223345699999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++++.||++|||||+++++..++..+|..+...++|+|||+||+|++
T Consensus 91 ~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 91 EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999988999999999999985
No 152
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.50 E-value=3.7e-14 Score=175.00 Aligned_cols=125 Identities=27% Similarity=0.290 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccc-----cccCCCCEEEEeCCCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN-----ATLKVPGLLVIDTPGH 867 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~-----~~~k~~~L~IIDTPGh 867 (923)
..++|+||||+++|||||+++|++.....+.. .. .....++ .......+++... .......|+|||||||
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a--~f--~~~a~lD-~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG--AA--RAFDQID-NAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH 369 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC--------------------------CCSCEEEECSSCEEEEEECCCH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhcccccc--cc--ccccccc-cccccccCceeEEEEEEEEcCCCEEEEEEECCCh
Confidence 34679999999999999999998632110000 00 0000000 0000011111110 1122356999999999
Q ss_pred cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..|..++..+++.+|++|||||++++...++.+++.++...++| +|||+||||+.
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 99999999999999999999999999999999999988888999 89999999985
No 153
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.49 E-value=5.1e-14 Score=146.92 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
++.++|+|+|++|+|||||+|+|++..+. .....+.|....... ..+....|+||||||+..|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~----------------~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS----------------RTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE----------------EEETTEEEEEEECCCSEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE----------------EEECCeeEEEEECCCCCCc
Confidence 45678999999999999999999986652 121122221111110 0112235999999999877
Q ss_pred hhHHHhhc---------cCCCEEEEEEeCCC-CCCHhHHHHHHHHHhc---C--CcEEEEEeCCCcC
Q 002428 871 TNLRSRGS---------GLCDIAILVVDIMH-GLEPQTIESLNLLKMR---N--TEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~l---------s~aDiVILVVDas~-gle~qtiEsL~lLkk~---~--iP~IVVLNKIDLL 922 (923)
......++ ..+|+||||+++.. ++......++..+... . .|+|||+||+|+.
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 54332222 37899999998865 4554545555555432 2 4999999999984
No 154
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.49 E-value=2.1e-14 Score=173.83 Aligned_cols=66 Identities=29% Similarity=0.322 Sum_probs=62.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..|+|||||||.+|...+.++++.||++|||||++++...++..+|..+...++|+|||+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 459999999999999999999999999999999999999999998888888899999999999985
No 155
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=4.6e-14 Score=158.96 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCC----
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG---- 866 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPG---- 866 (923)
...++|+|+|++++|||||+|+|++... ..+...++|.......+. +....|+||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~----------------~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT----------------YNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEE----------------ETTEEEEETTGGGTTTB
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEE----------------ECCceEEEEECCCCCcC
Confidence 3456799999999999999999997542 223333333322111111 1122489999999
Q ss_pred ------CcchhhHHH-hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 ------HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 ------hEsf~nlrs-~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.|..++. .++..||+||||||+++++..+...++.++...++|+|||+||+|++
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 677776655 47899999999999999999999999999988999999999999985
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.48 E-value=1.5e-13 Score=143.69 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee-------------------eccccccc-------c
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY-------------------FPAENIRE-------R 844 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~-------------------~p~e~i~e-------k 844 (923)
....++|+|+|.+|+|||||||+|++..+.....+.++...+.+. .....+.. .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 356688999999999999999999988764211111111111000 00000000 0
Q ss_pred e----eeeccc-----cc-cCCCCEEEEeCCCCc-------------chhhHHHhhccCCCEEE-EEEeCCCCCCHhHH-
Q 002428 845 T----RELKAN-----AT-LKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAI-LVVDIMHGLEPQTI- 899 (923)
Q Consensus 845 t----~~I~~~-----~~-~k~~~L~IIDTPGhE-------------sf~nlrs~~ls~aDiVI-LVVDas~gle~qti- 899 (923)
+ .++... .. .....|+||||||+. .+..++..++..++++| ||+|++.++..+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0 000000 00 013579999999964 34556777888888766 79999987766654
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 900 ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 900 EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..+...++|+|||+||+|++
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~ 205 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLM 205 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGS
T ss_pred HHHHHhCCCCCeEEEEEEccccC
Confidence 46666666789999999999985
No 157
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.48 E-value=8.6e-14 Score=149.14 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=76.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf--- 870 (923)
++|+|+|.+|+|||||+++|++.... .....+.|.. ..+.... + .....+.||||||++.|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~--------~-----~~~~~l~i~Dt~G~~~~~~~ 68 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLR--------F-----LGNMTLNLWDCGGQDVFMEN 68 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEE--------E-----TTTEEEEEEEECCSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEE--------e-----CCceEEEEEECCCcHHHhhh
Confidence 57999999999999999999875322 1112222221 1111100 0 01234899999999988
Q ss_pred --hhHHHhhccCCCEEEEEEeCCCCCCHhHHHH----HHHHH--hcCCcEEEEEeCCCcC
Q 002428 871 --TNLRSRGSGLCDIAILVVDIMHGLEPQTIES----LNLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 --~nlrs~~ls~aDiVILVVDas~gle~qtiEs----L~lLk--k~~iP~IVVLNKIDLL 922 (923)
..++..+++.+|++|||||+++......+.. +..+. ..++|+|||+||+|+.
T Consensus 69 ~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 5677788899999999999998655444432 22232 2379999999999985
No 158
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.47 E-value=6.1e-14 Score=147.56 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|.+|+|||||+++|++..+.....+. ++..+..... + ......|.||||||+..|..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t----~~~~~~~~~~-------~----~~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVM-------V----DGKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC----SEEEEEEEEE-------E----TTEEEEEEEEEECCCGGGTT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc----ccceeEEEEE-------E----CCEEEEEEEEeCCCchhhhH
Confidence 3467999999999999999999976654322111 1111110000 0 00112377999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qti--EsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
++..++..+|++|||||++++.....+ .++..+... ++|+|||+||+|+.
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 999999999999999999885443333 233444433 79999999999973
No 159
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.46 E-value=4.9e-14 Score=137.52 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn--Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
++|+|+|.+|||||||+++|++.. +.. ...+.++..+...... +.. .......+.||||||++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~----~~~~t~g~~~~~~~~~------~~~-~~~~~~~~~i~Dt~G~~~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG----MQSATVGIDVKDWPIQ------IRD-KRKRDLVLNVWDFAGREEFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC----------------CEEEEEEECSHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC----CcceeccEEeEEeeec------ccc-CCCCceEEEEEecCCCHHHHH
Confidence 579999999999999999998742 211 1122222222211100 000 000124589999999999988
Q ss_pred HHHhhccCCCEEEEEEeCCCCC-CHhH-HHHHHHHHh--cCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGL-EPQT-IESLNLLKM--RNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gl-e~qt-iEsL~lLkk--~~iP~IVVLNKIDLL 922 (923)
++..+++.++++|+|||++.+. .... ..++..+.. .++|+|||+||+|+.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 8888899999999999998752 1222 233333332 378999999999984
No 160
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.46 E-value=1.5e-13 Score=162.28 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=88.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeec-ceeeecccccccceeee-ccccccCCCCEEEEeCCCCcchhh
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTREL-KANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qI-gat~~p~e~i~ekt~~I-~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.+|+||||+|+|||||+++|++........+.+.... ...+.+....+..+... .....+....++|||||||..|..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~ 89 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 89 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHH
Confidence 4599999999999999999985433211111110000 00000000000000000 001112234599999999999999
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++++.+|++|||||++.++..++..++.++...++|+|||+||+|+.
T Consensus 90 ~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 90 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 99999999999999999999999999999999998999999999999984
No 161
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=2.5e-13 Score=142.65 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc----
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs---- 869 (923)
.++|+|+|++|+|||||+|+|++..+.....++.+..+ .++.........+ ........|+||||||+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~----~~t~~~~~~~~~~--~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI----KKTVQVEQSKVLI--KEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEE--CC--CCEEEEEEECCCCSCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc----CCceEEEEEEEEE--ecCCeEEEEEEEECCCccccccc
Confidence 35799999999999999999988766533221111111 0100000000001 0000112599999999732
Q ss_pred ---hhhHH-------Hhhcc-------------CCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ---FTNLR-------SRGSG-------------LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ---f~nlr-------s~~ls-------------~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|..++ ..++. .+|+|||||+.+ +++......++..+.. ++|+|+|+||+|++
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC
Confidence 32222 22222 378999999765 4888888888888877 89999999999985
No 162
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.45 E-value=2e-13 Score=142.80 Aligned_cols=115 Identities=19% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-CCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~-geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.+.++|+|+|++|+|||||+|+|++..+.. ....+.+...... ........|+||||||+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~----------------~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV----------------SRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE----------------EEEETTEEEEEEECCCSEET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE----------------EEeeCCeEEEEEECCCCCCC
Confidence 345779999999999999999999876531 1112221111000 01112234999999998766
Q ss_pred hhH-------HHhh--ccCCCEEEEEEeCCC-CCCHhHHHHHHHHHhc-C----CcEEEEEeCCCcC
Q 002428 871 TNL-------RSRG--SGLCDIAILVVDIMH-GLEPQTIESLNLLKMR-N----TEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nl-------rs~~--ls~aDiVILVVDas~-gle~qtiEsL~lLkk~-~----iP~IVVLNKIDLL 922 (923)
..+ +..+ ...+|+||||||+.. .+......++..+... + +|+|||+||+|+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 421 1122 347999999998864 4555556666655432 2 6999999999984
No 163
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.44 E-value=7e-14 Score=151.51 Aligned_cols=112 Identities=20% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|||++|+||||||++|++..+.. ..++++..+.. ..+....|.||||||++.|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-----~~pT~~~~~~~--------------~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVET--------------VEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE-----EEEETTEEEEE--------------EEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC-----cccccceEEEE--------------EecCcEEEEEEECCCCHhHH
Confidence 345689999999999999999998765431 11122211111 11122458999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HH-HHHHh---cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL-~lLkk---~~iP~IVVLNKIDLL 922 (923)
.++..++..+|+||||||+++........ ++ .++.. .++|+|||+||+|+.
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 99999999999999999998754443322 22 33333 278999999999984
No 164
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.44 E-value=5.5e-14 Score=158.37 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=78.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+|++|+|||||+|+|++..+. .....++|..+....+... ....++||||||+..|..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~---------------~~~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH---------------PIGPVTLVDTPGLDDVGE 98 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET---------------TTEEEEEEECSSTTCCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC---------------CCCeEEEEECcCCCcccc
Confidence 456999999999999999999987653 2223333322211111110 011589999999987754
Q ss_pred H-------HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L-------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l-------rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+ +..++..||++|||||+ +...++..++..+...++|+|||+||+|+.
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 3 45678899999999998 677888889999999999999999999985
No 165
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.44 E-value=1.1e-13 Score=157.86 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+|++|+|||||+|+|++..+. ....+++|..+....+ .+....|+||||||+..+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i----------------~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECF----------------IHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEE----------------EETTEEEEEEC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEE----------------EECCeEEEEEECCCCCcchh
Confidence 345999999999999999999986532 2222333322211111 11223499999999877654
Q ss_pred HH--------HhhccCCCEEEEEEeCCCCCCH----hHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 LR--------SRGSGLCDIAILVVDIMHGLEP----QTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lr--------s~~ls~aDiVILVVDas~gle~----qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+ ..++..+|++|||||++++... ....++..+. ++|+|||+||+|+.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRA 356 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSC
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCC
Confidence 33 3477899999999999998776 4444444443 79999999999985
No 166
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=2.4e-13 Score=157.56 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc---cCCCCcceeecceeeeccccc-cc---------ceeeec--------c
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENI-RE---------RTRELK--------A 850 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq---~geagGIT~qIgat~~p~e~i-~e---------kt~~I~--------~ 850 (923)
...++|+|+|++|+|||||||+|++..+. .+..+.++...+..+.....+ .. ....+. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35678999999999999999999998763 222222211111111100000 00 000000 0
Q ss_pred ccccCC-----CCEEEEeCCCCcc-----------hhhHHHhhccCCCEEEEEEeCCC-CCCHhHHHHHHHHHhcCCcEE
Q 002428 851 NATLKV-----PGLLVIDTPGHES-----------FTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNTEFI 913 (923)
Q Consensus 851 ~~~~k~-----~~L~IIDTPGhEs-----------f~nlrs~~ls~aDiVILVVDas~-gle~qtiEsL~lLkk~~iP~I 913 (923)
+..+.. ..|+||||||+.. |...+..++..+|+||||||+++ ++......++..+...+.|+|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 000001 2589999999875 56677788899999999999988 577787888888887789999
Q ss_pred EEEeCCCcC
Q 002428 914 VALNKVRFS 922 (923)
Q Consensus 914 VVLNKIDLL 922 (923)
||+||+|++
T Consensus 223 lVlNK~Dl~ 231 (550)
T 2qpt_A 223 VVLNKADMV 231 (550)
T ss_dssp EEEECGGGS
T ss_pred EEEECCCcc
Confidence 999999985
No 167
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.41 E-value=7.2e-13 Score=144.45 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeee-cccc------------------------------
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF-PAEN------------------------------ 840 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~-p~e~------------------------------ 840 (923)
+.-|.|+|||++|+|||||||+|++..+.....+.+|.......+ ....
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 455689999999999999999999987643333333321110000 0000
Q ss_pred ---------cccceeeeccccccCCCCEEEEeCCCCcch-------------hhHHHhhccCCCEEEEEEeCCC-CC-CH
Q 002428 841 ---------IRERTRELKANATLKVPGLLVIDTPGHESF-------------TNLRSRGSGLCDIAILVVDIMH-GL-EP 896 (923)
Q Consensus 841 ---------i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf-------------~nlrs~~ls~aDiVILVVDas~-gl-e~ 896 (923)
+......+.. .....+.|+||||||+..+ ..++..++..+|+|||||+++. .+ ..
T Consensus 112 ~~~~g~~~~~s~~~i~l~i-~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSI-YSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEE-EETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HHhcCCCCCcccceEEEEE-eCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 0000000000 0112356999999998776 5567788999999999998754 22 23
Q ss_pred hHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 897 QTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 897 qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.++..+...+.|+|+|+||+|++
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~ 216 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLM 216 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccC
Confidence 34555555666688999999999985
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.41 E-value=4.7e-13 Score=132.12 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=75.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nlr 874 (923)
++|+|||++|+||||||++|++..+..... +.++..+... .+.. ......+.||||||+..|..++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~--------~i~~--~g~~~~~~i~Dt~g~~~~~~~~ 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATR--------SIQV--DGKTIKAQIWDTAGQERYRRIT 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCCSCEEEEE--------EEEE--TTEEEEEEEEECSSGGGTTCCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEE--------EEEE--CCEEEEEEEEECCCchhhhhhh
Confidence 569999999999999999999876542211 1111111100 0000 0001237899999999888888
Q ss_pred HhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHHh---cCCcEEEEEeCCCcC
Q 002428 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVRFS 922 (923)
Q Consensus 875 s~~ls~aDiVILVVDas~gle~qti-EsL~lLkk---~~iP~IVVLNKIDLL 922 (923)
..++..++++|+|||++........ .++..+.. .+.|+++|+||+|+.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 8888999999999999874333322 23333332 468999999999984
No 169
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.40 E-value=2.7e-13 Score=154.19 Aligned_cols=111 Identities=19% Similarity=0.311 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
.++|+|+|++|+|||||+|+|++..+. ....+++|..+....+ .+....|+||||||+..+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i----------------~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQL----------------VVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEE----------------EETTEEEEECC---------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEE----------------EECCEEEEEEECCccccchh
Confidence 356999999999999999999986543 2222333322211111 11223489999999866543
Q ss_pred H--------HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 l--------rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. ...++..+|++|||||+++++......++..+.. .|+|||+||+|+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSS
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCC
Confidence 3 2346788999999999999888888777776654 7999999999985
No 170
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.40 E-value=8.4e-13 Score=149.25 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|||.+|+||||||++|++..+.. ..++++..+.. +.+....|.||||||++.|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----~~~T~~~~~~~--------------~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVET--------------VTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEE--------------EESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccceeEEE--------------EEeCCEEEEEEECCCcHHHH
Confidence 445779999999999999999999865431 11222222111 11233459999999999999
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..++..+|+||||||+++........ ++..+.. .++|+|||+||+|+.
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 99999999999999999999854333332 2333322 479999999999984
No 171
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.40 E-value=2.8e-13 Score=154.86 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=79.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCc-chh-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFT- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhE-sf~- 871 (923)
++|+|+|.+|+|||||||+|++..+. ....+++|..+....+. +....|+||||||+. .+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~----------------~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV----------------IRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE----------------ETTEEEEEEESSCCCSSCCT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEe----------------cCCeEEEEEECCCccccchh
Confidence 56999999999999999999986542 33333443332221111 112348999999987 543
Q ss_pred -------hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 -------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 -------nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....++..+|++|||||++++...+...++.++ .++|+|||+||+|+.
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 2345678999999999999988777777776655 478999999999984
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=9.1e-13 Score=134.36 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-hh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FT 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs-f~ 871 (923)
..++|+|||.+|+|||||+++|++....... ..+.++..++.. +..+. .....|.||||+|+.. +.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~---~~~~~g~d~~~~------~i~~~----~~~~~l~~~Dt~g~~~~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS---DCEVLGEDTYER------TLMVD----GESATIILLDMWENKGENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCC---C---CCTTEEEE------EEEET----TEEEEEEEECCTTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC---cCCccceeeEEE------EEEEC----CeeeEEEEeecCCCcchhh
Confidence 3467999999999999999999864331100 011122221110 00010 0112378999999877 55
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..+++.++++|||||+++........ ++..+.. .++|+|||+||+||.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 56677888999999999998743333222 3333332 368999999999984
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.39 E-value=7.9e-13 Score=157.01 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCEEEEeCCCCcc---hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHH-HHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHES---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEs---f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~-lLkk~~iP~IVVLNKIDLL 922 (923)
.+|+||||||+.. +...+..++..||+||||||+++++......+|. .+...+.|+|||+||+|++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4799999999655 3455667889999999999999988887776664 4555688999999999984
No 174
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.37 E-value=9.6e-13 Score=144.24 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh---
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 872 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n--- 872 (923)
+|+|||..|+|||||+++|.+.-+. .....+.++++..+.. +. ....|.||||||++.|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~----------v~-----~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEH----------FS-----TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEE----------EC-----SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEE----------Ec-----cEEEEEEEECCCchhccchhh
Confidence 3899999999999999988754322 2111223333332221 10 114599999999999964
Q ss_pred HHHhhccCCCEEEEEEeCCCCCCHhHHHHH----HHHH--hcCCcEEEEEeCCCcC
Q 002428 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLK--MRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 lrs~~ls~aDiVILVVDas~gle~qtiEsL----~lLk--k~~iP~IVVLNKIDLL 922 (923)
++..+++.++++|||||+++. ....+.+| ..+. ..++|++||+||+||.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 468899999999999999986 33333333 2222 2479999999999985
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=7.4e-13 Score=151.85 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=80.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf 870 (923)
.++.++|+|+|.+|+|||||+++|++..+... ..+.++..+....... +..+..........|.||||||++.|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~----~~~t~g~~~~~~~~~~--~~~v~~~~~~~~~~~~i~Dt~G~e~~ 111 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK----ESQTHGLNVVTKQAPN--IKGLENDDELKECLFHFWDFGGQEIM 111 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGG--SGGGTTCSTTTTCEEEEECCCSCCTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceEEEEecccc--ccceeecCCCceEEEEEEECCcHHHH
Confidence 45667899999999999999999998766432 2223333222111000 00111111122356999999999999
Q ss_pred hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCCcC
Q 002428 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVRFS 922 (923)
Q Consensus 871 ~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKIDLL 922 (923)
..+...+++.+|++|+|||++.. .....++..+... ++|+|||+||+|+.
T Consensus 112 ~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 112 HASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred HHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 98888899999999999999863 3344555566554 49999999999984
No 176
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.36 E-value=1.5e-12 Score=145.94 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
..++|+|||++|+|||||+|+|++.... .+..+++|.......+ .+....+.||||||+..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i----------------~~~g~~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV----------------FIDGRKYVFVDTAGLRRKS 242 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE----------------EETTEEEEESSCSCC----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE----------------EECCEEEEEEECCCCcccc
Confidence 3568999999999999999999986542 2222333322111110 1112248899999974332
Q ss_pred h-----------H-HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 N-----------L-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 n-----------l-rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. + ...++..+|+||||||+++++..+...++.++...++|+|||+||+|++
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 2 1 1346778999999999999888887777777888899999999999985
No 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.35 E-value=1.2e-12 Score=129.39 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-cCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-hh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FT 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq-~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs-f~ 871 (923)
.++|+|||.+|+|||||+++|++.... .... ..++..++.. ...+. .....|.+|||+|+.. +.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~----~~~~~l~~~Dt~~~~~~~~ 71 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----EVLGEDTYER------TLMVD----GESATIILLDMWENKGENE 71 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC--------GGGCTTEEEE------EEEET----TEEEEEEEECCCCC----C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----cccceeEEEE------EEEEC----CeEEEEEEEEeccCcchhh
Confidence 367999999999999999999863221 1100 1112111110 00010 0112378999999766 44
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHHh----cCCcEEEEEeCCCcC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVRFS 922 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLkk----~~iP~IVVLNKIDLL 922 (923)
.++..+++.+|++|+|||+++........ ++..+.. .++|+|||+||+|+.
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 45667788899999999998743333222 2222322 368999999999984
No 178
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.35 E-value=7.8e-13 Score=137.64 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=72.3
Q ss_pred ccccCCCCEEEEEcCC---------CCCHHHHHHHHHcC---ccccCCCCcc-eeecceeeecccccc-cceeeeccccc
Q 002428 788 AEENLRSPICCIMGHV---------DTGKTKLLDCIRGT---NVQEGEAGGI-TQQIGATYFPAENIR-ERTRELKANAT 853 (923)
Q Consensus 788 ~~enlRnp~I~VLG~~---------GSGKSTLLN~Llgt---nVq~geagGI-T~qIgat~~p~e~i~-ekt~~I~~~~~ 853 (923)
.+...+.++|+|||.+ ||||||||++|++. .+.....+.+ +..+....+...... -.+.+. ....
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 91 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSR-SLED 91 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccc-cccC
Confidence 3445677889999999 99999999999983 3322211111 111111000000000 000000 0001
Q ss_pred cCCCCEEEEe-----------------------CCCCcchhhHHHhhcc---------------------CCCEEEEEEe
Q 002428 854 LKVPGLLVID-----------------------TPGHESFTNLRSRGSG---------------------LCDIAILVVD 889 (923)
Q Consensus 854 ~k~~~L~IID-----------------------TPGhEsf~nlrs~~ls---------------------~aDiVILVVD 889 (923)
.....|.||| |+|++.|..++..++. .+|++|||||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 1224588888 4444444445555555 6999999999
Q ss_pred CCCC--CCHhHH-HHHHHH----HhcCCcEEEEEeCCCcC
Q 002428 890 IMHG--LEPQTI-ESLNLL----KMRNTEFIVALNKVRFS 922 (923)
Q Consensus 890 as~g--le~qti-EsL~lL----kk~~iP~IVVLNKIDLL 922 (923)
+++. .....+ .++..+ ...++|+|||+||+|+.
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 9885 444333 233333 23579999999999984
No 179
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.34 E-value=4.9e-12 Score=138.09 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+.++|+|+|++|+|||||||+|++..+..+..++.|..+....+ .+....+.||||||+..+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQF----------------EDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEE----------------EETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEE----------------EecCceEEEEeCCCccccc
Confidence 356789999999999999999998865432222222222111111 1112348999999975432
Q ss_pred ---------hHHHhhccCCCEEEEEEeCCCCC--CHhH-HHHHHHHHh-c-CCcEEEEEeCCCcC
Q 002428 872 ---------NLRSRGSGLCDIAILVVDIMHGL--EPQT-IESLNLLKM-R-NTEFIVALNKVRFS 922 (923)
Q Consensus 872 ---------nlrs~~ls~aDiVILVVDas~gl--e~qt-iEsL~lLkk-~-~iP~IVVLNKIDLL 922 (923)
.........+|++|||||++... .... ..++..+.. . ++|+|||+||+|+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11223445799999999988643 3333 334444433 2 79999999999985
No 180
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=2.8e-12 Score=126.53 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl 873 (923)
.++|+|||++|+||||||++|++..+.....+ .++..+... .+... .....+.||||||+..|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~----t~~~~~~~~--------~i~~~--g~~~~~~i~Dt~g~~~~~~~ 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----TIGVEFATR--------SIQVD--GKTIKAQIWDTAGLERYRAI 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCC----CCSEEEEEE--------EEEET--TEEEEEEEEEECSCCSSSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC----ccceEEEEE--------EEEEC--CEEEEEEEEECCCCcchhhh
Confidence 36799999999999999999998765432221 222111110 00000 00123678999999988888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle~qti-EsL~lLk---k~~iP~IVVLNKIDLL 922 (923)
+..+++.++++|+|+|++.......+ .++..+. ....|+++|+||+|+.
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 88889999999999998864322222 2333333 2368999999999974
No 181
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.31 E-value=5e-12 Score=137.81 Aligned_cols=132 Identities=15% Similarity=0.197 Sum_probs=78.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceee-----------eccc----cccc-----------c
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY-----------FPAE----NIRE-----------R 844 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~-----------~p~e----~i~e-----------k 844 (923)
.+..|+|+|+|.+++|||||||+|++..+.....+.+|...+.+. +... .... .
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 466789999999999999999999987764222222222221100 0000 0000 0
Q ss_pred e----eeeccc------cccCCCCEEEEeCCCCc-------------chhhHHHhhccCCC-EEEEEEeCCCCCCHhHH-
Q 002428 845 T----RELKAN------ATLKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCD-IAILVVDIMHGLEPQTI- 899 (923)
Q Consensus 845 t----~~I~~~------~~~k~~~L~IIDTPGhE-------------sf~nlrs~~ls~aD-iVILVVDas~gle~qti- 899 (923)
. .++... .....+.|+||||||+. .+..++..++..++ +||+|++++..+..+..
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 0 000000 00113579999999963 24456666776655 55556777666655544
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 900 ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 900 EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..+...+.|+|+|+||+|++
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~ 210 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLM 210 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGS
T ss_pred HHHHHhCcCCCceEEEecccccc
Confidence 36666666789999999999985
No 182
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.31 E-value=9.9e-13 Score=144.24 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcc----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHES---- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEs---- 869 (923)
+.|+|||.+++||||||++|+...+.....++.|..+....+ .+. ...|+||||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v----------------~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMV----------------ETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEE----------------ECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEE----------------EeCCCceEEEecCCCCcccccc
Confidence 359999999999999999998755432222222211111111 011 13599999999643
Q ss_pred ---hhhHHHhhccCCCEEEEEEeCCC---CCCHhHH-HHHHHHHh-----cCCcEEEEEeCCCcC
Q 002428 870 ---FTNLRSRGSGLCDIAILVVDIMH---GLEPQTI-ESLNLLKM-----RNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ---f~nlrs~~ls~aDiVILVVDas~---gle~qti-EsL~lLkk-----~~iP~IVVLNKIDLL 922 (923)
+.....+++..|+++|||||+++ ......+ .++..|.. ..+|+|||+||||++
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 22333445566999999999986 2222222 33344443 368999999999985
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=4.8e-12 Score=124.87 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
+..+|+|+|++|+|||||+++|++..+... +.+..|.+++.. .+ .+. ..+.||||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~----~~~~~G~~~~~~--------~~----~~~-~~~~l~Dt~G~~~~~~ 87 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLAR----TSKTPGRTQLIN--------LF----EVA-DGKRLVDLPGYGYAEV 87 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEE--------EE----EEE-TTEEEEECCCCC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcccc----ccCCCccceeeE--------EE----Eec-CCEEEEECcCCccccc
Confidence 445799999999999999999987652110 112222222110 00 011 1589999999742
Q ss_pred -------hhhHHHhhc---cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 -------FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -------f~nlrs~~l---s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|......++ ..++++++|+|+.++.......++..+...++|+++|+||+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 222222333 57899999999998777655556666677789999999999985
No 184
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.28 E-value=9.1e-12 Score=137.54 Aligned_cols=110 Identities=22% Similarity=0.248 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc------
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs------ 869 (923)
+|+|+|++|+|||||||+|++..+......+.|..+.... + .+....+.||||||+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~------------i----~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYA------------I----PINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEE------------E----EETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEE------------E----EECCEEEEEEeCCCchhcCCHHH
Confidence 4999999999999999999986653222222221111100 1 11112489999999622
Q ss_pred ---hhhHHHhhccCCCEEEEEEeCCCCC--CHhHH----HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 ---FTNLRSRGSGLCDIAILVVDIMHGL--EPQTI----ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 ---f~nlrs~~ls~aDiVILVVDas~gl--e~qti----EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|.. +...+..+|++|||||+++.. ....+ .++..+...++|+|+|+||+|++
T Consensus 245 ve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 245 VDAFFV-TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp HHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred HHHHHH-HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 222 234678899999999998753 22212 22223333478999999999985
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=7.9e-12 Score=137.47 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=62.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC-------
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh------- 867 (923)
++|+|||++|+||||||++|++........ ....+....++..+. ...+..........|+||||||+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~---~~~~~~~~~~ti~~~--~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERV---IPGAAEKIERTVQIE--ASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC------------------CEEEE--EEEEC----CEEEEEEEEC-----------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCc---ccCCCcccCCceeEE--EEEEEeecCCcccceEEEEeccccccCccH
Confidence 458999999999999999998754432110 000000000000000 00000000001124899999998
Q ss_pred cchhhHHH-------hhcc-------------CCCEEEEEEeC-CCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFTNLRS-------RGSG-------------LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nlrs-------~~ls-------------~aDiVILVVDa-s~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++. .++. .+|+|||+|+. .+++......++..+. .++|+|||+||+|++
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCC
Confidence 44544433 3332 24678888876 5677777766666553 579999999999985
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=2.4e-11 Score=135.68 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=47.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee--ecceeeecccccccceeeeccc------cccCCCCEEEEeCCC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKAN------ATLKVPGLLVIDTPG 866 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~--qIgat~~p~e~i~ekt~~I~~~------~~~k~~~L~IIDTPG 866 (923)
++|+|+|.+|+|||||+|+|++.....+..+++|. .++..++.......+...+..+ .......|.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 36999999999999999999987644344444443 2332221100000000000000 000113499999999
Q ss_pred Ccch----h---hHHHhhccCCCEEEEEEeCCCC
Q 002428 867 HESF----T---NLRSRGSGLCDIAILVVDIMHG 893 (923)
Q Consensus 867 hEsf----~---nlrs~~ls~aDiVILVVDas~g 893 (923)
+..+ . +....+++.||+||+|||++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 1 2223457899999999999875
No 187
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.16 E-value=1.4e-10 Score=139.00 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=84.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeeccee---eecc--------c--------ccc---------
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT---YFPA--------E--------NIR--------- 842 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat---~~p~--------e--------~i~--------- 842 (923)
.+.-|+|+|+|.+++|||||||+|++..+.....+.+|..+... ..+. . .+.
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 46678899999999999999999999877432223333211000 0000 0 000
Q ss_pred --cceeeec-----ccc-ccCCCCEEEEeCCCCcc-------------hhhHHHhhc-cCCCEEEEEEeCCCCCCHhHH-
Q 002428 843 --ERTRELK-----ANA-TLKVPGLLVIDTPGHES-------------FTNLRSRGS-GLCDIAILVVDIMHGLEPQTI- 899 (923)
Q Consensus 843 --ekt~~I~-----~~~-~~k~~~L~IIDTPGhEs-------------f~nlrs~~l-s~aDiVILVVDas~gle~qti- 899 (923)
....++. ..+ ....+.|+||||||+.. +..++..++ ..+|+||+|+|+++++..+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000000 000 11235799999999644 223344444 578999999999988776665
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 900 ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 900 EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.++..+...+.|+|+|+||+|++
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLM 230 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSS
T ss_pred HHHHHHHhcCCCEEEEEeCcccC
Confidence 67788888889999999999986
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=2.5e-10 Score=128.60 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n- 872 (923)
+..|+|||++|+||||||++|++..+.....+++.... .+. +......+........+.++||||||+..+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~----~~t--~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI----KKT--VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------C--CEEEEEECC------CEEEEEEECC--------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC----ccc--eeeeeEEEEEecCCcccceeeeechhhhhhccc
Confidence 34589999999999999999998765322122221111 000 00000111111111123589999999765421
Q ss_pred ------HH------------------Hhhcc--CCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 873 ------LR------------------SRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 873 ------lr------------------s~~ls--~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+. ..++. .+++|||++.++ +++.+....++..|.. ++|+|+|+||+|++
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL 180 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCc
Confidence 10 11222 356788888876 7888888878877764 89999999999985
No 189
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.9e-10 Score=128.08 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=73.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-----
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs----- 869 (923)
.+|+|||.||+|||||+|+|++..+..++.+++|..+....+ .+....|+|+||||+..
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~----------------~~~~~~i~l~D~pGl~~~a~~~ 136 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI----------------RYKGAKIQMLDLPGIIDGAKDG 136 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE----------------EETTEEEEEEECGGGCCC----
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE----------------EeCCcEEEEEeCCCccCCchhh
Confidence 469999999999999999999877655555555443322111 12233589999999542
Q ss_pred --hhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHH-HHHHh-----cCCcEEEEEeCCCc
Q 002428 870 --FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVRF 921 (923)
Q Consensus 870 --f~nlrs~~ls~aDiVILVVDas~gle~qtiEsL-~lLkk-----~~iP~IVVLNKIDL 921 (923)
..+.....++.||++|+|||+++++. .+..+ ..|.. ...|.++++||+|.
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred hHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 23445567789999999999987432 22222 22322 24689999999996
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.05 E-value=8.7e-11 Score=117.27 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeeccccc--ccceeeecc----cc----------ccCC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI--RERTRELKA----NA----------TLKV 856 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i--~ekt~~I~~----~~----------~~k~ 856 (923)
+.++|+|+|++|+|||||+++|+...........+...++.++...... ......+.. .. .+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3457999999999999999999864211111111111111100000000 000000000 00 2234
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.++||||||+.... ..+....+++|+|||++.+..... ..+...++|+|||+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCC
Confidence 679999999952111 111135789999999987643221 22223468999999999973
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.99 E-value=9.4e-10 Score=112.78 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCEEEEeCCCCcchhhHH------HhhccCCCEEEEEEeCCCCCCHhHHHH-----HHHHHhcCCcEEEEEeCCCcC
Q 002428 857 PGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIES-----LNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlr------s~~ls~aDiVILVVDas~gle~qtiEs-----L~lLkk~~iP~IVVLNKIDLL 922 (923)
+.++||||||+..+.... ..++.. +++|+|+|+........+.. +..+...++|++||+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 579999999987654331 234556 89999999876555544331 122334579999999999974
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=1.4e-09 Score=120.71 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCccee--ecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~--qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~- 871 (923)
.+|+|||.+|+|||||+|+|++..+.....+++|. +++...++...... ...+..+..+....+.||||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~-l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDA-LAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHH-HHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccce-eeeeecccceeeeEEEEEECCCCccccc
Confidence 56999999999999999999987654444444333 33322222110000 000000111112359999999987653
Q ss_pred ------hHHHhhccCCCEEEEEEeCCC
Q 002428 872 ------NLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 872 ------nlrs~~ls~aDiVILVVDas~ 892 (923)
+....+++.||+||+|||+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223456789999999999986
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.94 E-value=2.3e-10 Score=125.10 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.|+||||||.... ....+..+|++|||+|+..+...+.+. . ....+|+|||+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 3467999999996432 233458899999999987644332221 0 11246999999999974
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.92 E-value=8.3e-10 Score=120.90 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.++||||||+... .......+|++|+|+|+..+...+.+.. .....|+|||+||+|++
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HHHhcCCEEEEeeecCC
Confidence 4467999999996422 1234678999999999987532221111 11357899999999984
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.90 E-value=2.7e-09 Score=120.12 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccC-CCCEEEEeCCCCcch---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHESF--- 870 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k-~~~L~IIDTPGhEsf--- 870 (923)
..|+|||++|+||||||++|++...........|.. +. +..+ .+. ...++||||||+...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~------p~------~G~V----~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS------PN------LGVV----EVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSC------CE------EEEE----ECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceec------ce------eeEE----EecCcceEEEEeccccccchhh
Confidence 358999999999999999998754321111111111 10 0001 011 134899999997432
Q ss_pred ----hhHHHhhccCCCEEEEEEeCCCCCCHhHHH-HHHHHH-----hcCCcEEEEEeCCCcC
Q 002428 871 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK-----MRNTEFIVALNKVRFS 922 (923)
Q Consensus 871 ----~nlrs~~ls~aDiVILVVDas~gle~qtiE-sL~lLk-----k~~iP~IVVLNKIDLL 922 (923)
.....+.+..|+++|+|||++ ......+. ++..+. ....|.|||+||+|+.
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 122334566799999999997 21122222 122221 1358999999999985
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.89 E-value=7.9e-10 Score=120.36 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.++||||||+..+... .+..+|++|||+|+..+...+.+.. ...++|+|||+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 3567999999998765443 4589999999999976432221111 11257899999999984
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.86 E-value=3.4e-09 Score=117.56 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcce--eecceeeecccccccceeeeccccc----cCCCCEEEEeCCCCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANAT----LKVPGLLVIDTPGHE 868 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT--~qIgat~~p~e~i~ekt~~I~~~~~----~k~~~L~IIDTPGhE 868 (923)
++|+|+|++|+|||||+|+|++..+.....++.| ++++...++...+......+. ... +....+.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~-~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFA-KGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHC-BTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhc-ccccccccCCceEEEEECCCcc
Confidence 3589999999999999999987643333333333 333333222111100000000 000 122459999999976
Q ss_pred ch-------hhHHHhhccCCCEEEEEEeCCC
Q 002428 869 SF-------TNLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 869 sf-------~nlrs~~ls~aDiVILVVDas~ 892 (923)
.+ .+....+++.||+||+|||+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 53 3344567899999999999985
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.84 E-value=3.1e-09 Score=114.08 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC------
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------ 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh------ 867 (923)
+..|+|||+.|+||||||++|++.++.... ++.. .+....+..... ...+........+.|+||||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~--gi~~-~g~~~~~t~~~~--~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~ 92 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPER--VISG-AAEKIERTVQIE--ASTVEIEERGVKLRLTVVDTPGYGDAINC 92 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-----------------------------CEEEEC---CCEEEEEEEEC--------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCC--Cccc-CCcccCCcceEe--eEEEEecCCCcccCcchhhhhhhhhhcCc
Confidence 456899999999999999999875332111 1110 000000000000 00111111111245899999997
Q ss_pred -cchhhHHH-------hhcc-------------CCCEEEEEEeCCC-CCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 -ESFTNLRS-------RGSG-------------LCDIAILVVDIMH-GLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 -Esf~nlrs-------~~ls-------------~aDiVILVVDas~-gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.|..++. .+++ .+++|||+++++. ++.+....++..+. ..+|+|||+||+|++
T Consensus 93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTL 168 (301)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCC
Confidence 44433322 2221 2456778887754 68887766666554 368999999999985
No 199
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.77 E-value=5.1e-09 Score=115.41 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=52.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-----------CHhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-----------EPQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-----------e~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..|.||||+|+..|..+|..++..+++||||||++..- ......++..+.. .++|+|||+||+||
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCc
Confidence 45889999999999999999999999999999998731 1223334444433 36899999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 273 ~ 273 (353)
T 1cip_A 273 F 273 (353)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=107.27 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=71.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh---
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~--- 871 (923)
++|+|||+.|+||||||++|++...+.. +.+.. .+. .++..... ...++........+.++++|+||+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~-~g~-~i~~~~~~-~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWN-REE-KIPKTVEI-KAIGHVIEEGGVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSC-CEEEESCC----CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--Ccccc-CCc-ccCcceee-eeeEEEeecCCCcCCceEEechhhhhhcccH
Confidence 5799999999999999999997543321 11110 000 01111111 1111111111123468999999943210
Q ss_pred -------h--------HHHh----------hccCCCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 -------N--------LRSR----------GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 -------n--------lrs~----------~ls~aDiVILVVDas-~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
. .... .+..++++||++|.. +++.+..+.++..+... +++|+|+||+|.+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 0 0001 122368899999965 89999999999988887 9999999999976
No 201
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.76 E-value=7.1e-09 Score=114.09 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCC---------C--CHhHHHHHHHHHh----cCCcEEEEEeCC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---------L--EPQTIESLNLLKM----RNTEFIVALNKV 919 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~g---------l--e~qtiEsL~lLkk----~~iP~IVVLNKI 919 (923)
....|.||||+|++.|..+|..+++.+++||||||++.. . ......++..+.. .++|+|||+||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 345589999999999999999999999999999999821 1 1222333333332 368999999999
Q ss_pred CcC
Q 002428 920 RFS 922 (923)
Q Consensus 920 DLL 922 (923)
||+
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.73 E-value=6.6e-09 Score=119.66 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=42.9
Q ss_pred CCCCEEEEeCCCCcch----hhHHHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESF----TNLRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf----~nlrs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDLL 922 (923)
..+.|+||||||+... ....... +..+|.+|||||++.+.. ....+..+.. .+|+ +||+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccc
Confidence 4567999999997532 1111111 237999999999998754 3333444433 2785 8999999974
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=113.63 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=65.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh-----
Q 002428 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT----- 871 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~----- 871 (923)
|+|||++|+||||||+.|++..+.........+ + . ....+..+.. .....+.++|+||||+....
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~--~------~-~~~~i~~v~Q-~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQP--G------V-QLQSNTYDLQ-ESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCS--S------C-EEEEEEEEEE-C--CEEEEEEEEEECCCC-CCHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCc--c------c-eEeeEEEEee-cCccccccchhhhhhhhhccccchh
Confidence 899999999999999999986542111000000 0 0 0000000100 01112358999999964321
Q ss_pred ---------hH----HHhh--cc-------C--CCE-EEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 872 ---------NL----RSRG--SG-------L--CDI-AILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 872 ---------nl----rs~~--ls-------~--aDi-VILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.. ...+ +. . +|+ ++||+|+.+++....++++..|. .++|+|+|+||+|.+
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAI 189 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhcc
Confidence 01 1111 11 1 244 66677888899999988888886 689999999999976
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.72 E-value=1.4e-09 Score=120.02 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc------cccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn------Vq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGh 867 (923)
..+|+|+|.+|+|||||+|+|++.. +..+..+|+|..+. .+. + ...+.||||||+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--------------~~~----~-~~~~~liDtPG~ 222 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--------------EIP----L-ESGATLYDTPGI 222 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--------------EEE----C-STTCEEEECCSC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--------------EEE----e-CCCeEEEeCCCc
Confidence 3459999999999999999999751 11111222221110 000 0 124899999996
Q ss_pred cchhhH-------HHhhc---cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 868 ESFTNL-------RSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 868 Esf~nl-------rs~~l---s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.....+ ....+ ..++.++|++++.+.+....+..+.++...++||++++||+|.+
T Consensus 223 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 223 INHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp CCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 433211 11222 66899999999854221112222444555678999999999975
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=113.52 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccce-eeeccccccCCCCEEEEeCCCCcchhh
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-RELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt-~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
..+|+|||.+|+|||||+|+|++..+.....+++|..+....+.....+... ..+..+.......+.||||||+..+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 3569999999999999999999877654444444433322222211110000 000000001123499999999765433
Q ss_pred -------HHHhhccCCCEEEEEEeCCC
Q 002428 873 -------LRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 873 -------lrs~~ls~aDiVILVVDas~ 892 (923)
.+..+++.||+||+|||+++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC--
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 55678899999999999874
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.63 E-value=3.7e-09 Score=116.73 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=64.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhhH-
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~nl- 873 (923)
.+|+|+|.+|+|||||+|+|++...... ...+.....|..+ .... .+ .+ ..++.||||||+.....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~-----~~~~~~~~~~gtT-~~~~-~~----~~-~~~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET-----ENVITTSHFPGTT-LDLI-DI----PL-DEESSLYDTPGIINHHQMA 228 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC-----SSCCEEECCC-----CEE-EE----ES-SSSCEEEECCCBCCTTSGG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc-----ccceecCCCCCee-cceE-EE----Ee-cCCeEEEeCCCcCcHHHHH
Confidence 4699999999999999999997532110 0000001111100 0000 00 01 124899999996433211
Q ss_pred -------HHhh--ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 -------RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 -------rs~~--ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.... ....+.++|++++.+.+....+..+.++...++||++|+||+|.+
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 1111 356788999999854221112222344455678999999999975
No 207
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.61 E-value=3.5e-08 Score=108.05 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCC-------CCCC----HhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM-------HGLE----PQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas-------~gle----~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..|.||||+|++.|..+|..+++.+++||||||++ .... .....++..+.. .++|+|||+||+||
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 34889999999999999999999999999999876 2111 122333443332 36899999999997
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 247 ~ 247 (327)
T 3ohm_A 247 L 247 (327)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.54 E-value=6.9e-08 Score=96.60 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecc------------eeeeccc--cccc-c---eeeecccccc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG------------ATYFPAE--NIRE-R---TRELKANATL 854 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIg------------at~~p~e--~i~e-k---t~~I~~~~~~ 854 (923)
+.++|+|+|++|+|||||+++|+...+.....+.+...++ ...+... .... . +.........
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3567999999999999999999865433211111222221 0000000 0000 0 0000000111
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
..+.++|+||+|.... ...+....+.+++|+|+..+...... ... ..+.|+|||+||+|+.
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~-~~~---~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK-HPG---IMKTADLIVINKIDLA 177 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT-CHH---HHTTCSEEEEECGGGH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh-hhh---HhhcCCEEEEeccccC
Confidence 2347999999995221 11122345677888986543221111 111 1368999999999973
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.50 E-value=7.4e-08 Score=105.16 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
....++||||||...... .....+|++++|+|+..+...+.+ ...+ ..+|.+||+||+|++
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i--~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI--KKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C--CTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH--HHHH--hccccEEEEEchhcc
Confidence 356799999999753221 234789999999998643211100 0000 134778889999963
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.34 E-value=8e-07 Score=99.51 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccCCCCcceeec--ceeeecccccccceeeeccccccCCCCEEEEeCCCCcc-
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQI--GATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnV-q~geagGIT~qI--gat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs- 869 (923)
..+|+|||++|+|||||+|+|++..+ ..+..+++|..+ |...++........ .+..........+.||||||+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~-~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC-EAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHH-HHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhh-hhcccccccCcceEEEeccccccC
Confidence 46799999999999999999998776 445555554433 32222211100000 00000000012489999999432
Q ss_pred ------hhhHHHhhccCCCEEEEEEeCCC
Q 002428 870 ------FTNLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 870 ------f~nlrs~~ls~aDiVILVVDas~ 892 (923)
+.+.+..+++.+|++|+|+|+..
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44556677889999999999874
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=6.9e-07 Score=101.57 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCcchhh----HH--HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 856 VPGLLVIDTPGHESFTN----LR--SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~n----lr--s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.++||||||...... .. ...+..+|.+|||+|++.+ ......+..+...-.+..||+||+|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 36799999999543221 11 1223458999999999874 333444455554445667999999963
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.34 E-value=6.7e-07 Score=101.14 Aligned_cols=65 Identities=26% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCcchhh----HHH--hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-c-EEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHESFTN----LRS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-E-FIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~n----lrs--~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P-~IVVLNKIDLL 922 (923)
..+.++||||||...... ... ..+..+|.+|||+|++.+. .....+..+.. .+ | ++||+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCCCc
Confidence 456799999999654321 111 1223689999999998753 23333333332 46 6 89999999963
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.32 E-value=1.6e-06 Score=97.67 Aligned_cols=116 Identities=20% Similarity=0.290 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
+.++|+|+|++|+|||||||.|++...+. .+.++.. +.. . .+. ..+... ...+.++++|+||...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~-g~~-~----t~~--~~v~q~--~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTG-VVE-V----TME--RHPYKH--PNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCC-C---------CC--CEEEEC--SSCTTEEEEECCCGGGSSC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEEC-Cee-c----cee--EEeccc--cccCCeeehHhhcccchHH
Confidence 34579999999999999999999843221 1111111 000 0 000 011111 1235799999999532
Q ss_pred -hhh-HHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 870 -FTN-LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 870 -f~n-lrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+.. +....+...+.+++ ++..+ ...+...++..+...+.|++||+|+.|++
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 111 11223444566555 77655 56788888888888899999999999875
No 214
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.24 E-value=2.8e-06 Score=99.72 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCcc-------------hhhHHHhhccCC-CEEEEEEeCCCCCC-HhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHES-------------FTNLRSRGSGLC-DIAILVVDIMHGLE-PQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEs-------------f~nlrs~~ls~a-DiVILVVDas~gle-~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
.|.|+|+|+||... +..+...++... .++|+|+.....+. .....++..+...+.++|+|+||+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 46799999998432 223344444443 45566666443332 3334555566666889999999999
Q ss_pred cC
Q 002428 921 FS 922 (923)
Q Consensus 921 LL 922 (923)
++
T Consensus 226 lv 227 (608)
T 3szr_A 226 LV 227 (608)
T ss_dssp GS
T ss_pred hc
Confidence 86
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.20 E-value=1.8e-06 Score=92.88 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=43.4
Q ss_pred CCCCEEEEeCCCCcc--hhh-HHH-----hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCcC
Q 002428 855 KVPGLLVIDTPGHES--FTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRFS 922 (923)
Q Consensus 855 k~~~L~IIDTPGhEs--f~n-lrs-----~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDLL 922 (923)
..+.++||||||... ... ++. ..+..+|.+|||+|++.+ ...+..+..+.. .+| ..||+||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 356799999999766 321 211 234579999999999753 344444444443 467 78899999963
No 216
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.15 E-value=1.8e-06 Score=95.43 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-----------CHhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-----------EPQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-----------e~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..|.||||+|+..|..+|..++..+++||||||++..- ......++..+.. .++|+|||+||+||
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 45999999999999999999999999999999998731 1122333433332 36899999999998
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
+
T Consensus 281 ~ 281 (362)
T 1zcb_A 281 L 281 (362)
T ss_dssp H
T ss_pred h
Confidence 4
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.14 E-value=1.6e-06 Score=98.23 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCcc------hhhHHHh--hccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHES------FTNLRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEs------f~nlrs~--~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
.+.++||||||... +...+.. ....++.++||+|++.+ ......+..+...-.+..||+||+|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccc
Confidence 56799999999644 1221111 22357899999999874 33444455555444568899999996
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.08 E-value=4.7e-06 Score=94.26 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCcchhh-HHH-----hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~n-lrs-----~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.+.++||||||...+.. +.. ..+..++.++||+|++.+. ..+..+..+.. .+| ..||+||+|.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCC
Confidence 46799999999655422 111 2345789999999998653 23333333332 355 3578999985
No 219
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.04 E-value=3.3e-06 Score=99.14 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchhh
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~n 872 (923)
+.++|+|+|.+|+|||||||+|++..+.. ..++.+.......+.+ .+.. .......++||||||+.....
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~--------~~~~-~~~~~~~i~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMW--------CVPH-PKKPGHILVLLDTEGLGDVEK 106 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEE--------EEEC-SSSTTCEEEEEEECCBCCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEe--------eccc-ccCCCceEEEecCCCcCcccc
Confidence 34669999999999999999999876421 1122111110000000 0000 011234599999999754322
Q ss_pred ------HHH--hhccCCCEEEEEEeCCCCCCHhHHHHHHH
Q 002428 873 ------LRS--RGSGLCDIAILVVDIMHGLEPQTIESLNL 904 (923)
Q Consensus 873 ------lrs--~~ls~aDiVILVVDas~gle~qtiEsL~l 904 (923)
... ..+-.++ ++|||++.++..+.+.++.+
T Consensus 107 ~~~~~~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 107 GDNQNDSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp CCCTTHHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHH
Confidence 111 1111233 57788788888877776554
No 220
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.02 E-value=3.6e-06 Score=94.61 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=51.3
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC----------CCC-HhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH----------GLE-PQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~----------gle-~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..|.||||+|++.|..+|..+++.+++||||||++. .-. .....++..+.. .++|+|||+||+||
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 348899999999999999999999999999999986 111 122334444433 36899999999997
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
.
T Consensus 297 ~ 297 (402)
T 1azs_C 297 L 297 (402)
T ss_dssp H
T ss_pred h
Confidence 3
No 221
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.97 E-value=3.6e-06 Score=92.92 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=50.2
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCC----------CCC-CHhHHHHHHHHHh----cCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM----------HGL-EPQTIESLNLLKM----RNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas----------~gl-e~qtiEsL~lLkk----~~iP~IVVLNKIDL 921 (923)
..|.||||+|++.|..+|..+++.+++||||||++ ..- ......++..+.. .++|+|||+||+||
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL 262 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcch
Confidence 45999999999999999999999999999999997 211 1122233433332 36899999999997
Q ss_pred C
Q 002428 922 S 922 (923)
Q Consensus 922 L 922 (923)
.
T Consensus 263 ~ 263 (354)
T 2xtz_A 263 F 263 (354)
T ss_dssp H
T ss_pred h
Confidence 3
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.88 E-value=1.1e-05 Score=86.45 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=52.0
Q ss_pred CEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHH-HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 858 ~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gl-e~qti-EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.+.|||| ++.|..++..++..+|+||+|||+++.. ....+ .++..+...++|+|||+||+||.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 5899999 8999999999999999999999999754 33333 34555566789999999999985
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.84 E-value=1.4e-05 Score=85.36 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+.++|+|+|.+|+|||||||+|++..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 456799999999999999999998663
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.84 E-value=1.4e-05 Score=92.23 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+|+|||+.|+||||||++|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999975
No 225
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.78 E-value=1.6e-05 Score=86.85 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcchhh----HHHh--hccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTN----LRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~n----lrs~--~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
+.++||||+|...... .... ..-.+|-.++|+|++.+ .+.+..+..+....-..+|++||+|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 5588999999643221 1111 12347899999998775 34444444444322234677899984
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.71 E-value=3.6e-05 Score=83.30 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|+||||++..|.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4689999999999999998864
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.70 E-value=5.3e-05 Score=82.39 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCcchhhHHH-------hh-----ccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs-------~~-----ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.+.++||||||......... .. ...+|.++||++++.+ ...+..+..+.. .++ .-||+||+|.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 46799999999655321110 11 2348999999998853 334433333322 233 3478999985
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.64 E-value=0.00013 Score=71.53 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=48.6
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-----~iP~IVVLNKIDL 921 (923)
.+.++|||||+.. .......+..+|.+|+|+.+.... .....++..+... ++++.||+|+++.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 3679999999875 344556777899999999988766 6666677777644 4688999999974
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=6.6e-05 Score=84.96 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCcchhh-HHH-----hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~n-lrs-----~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
..+.++||||||...... +.. ..+..++.+|||+|++.+ ...+..+..+.. .++ ..||+||+|.
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCC
Confidence 346799999999644321 111 223368999999998764 333333333332 233 5678999985
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.62 E-value=3.4e-05 Score=81.41 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
++|+|+|.+|+|||||||+|++..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998665
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.57 E-value=4.6e-05 Score=81.90 Aligned_cols=65 Identities=9% Similarity=-0.038 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCcchhhH----HHhhcc--CCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTNL----RSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nl----rs~~ls--~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDL 921 (923)
..+.++||||||....... ....+. .++.++||++++++. .....++..+...++ .-||+||+|.
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~-~giVltk~D~ 251 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPV-NQYIFTKIDE 251 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCC-CEEEEECTTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCC-CEEEEeCCCc
Confidence 4577999999996544321 112222 367889999988742 111122222222222 3566799985
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.52 E-value=0.00013 Score=78.85 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+|+|+|+.|||||||++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999974
No 233
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.44 E-value=0.00094 Score=69.22 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=46.8
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVR 920 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKID 920 (923)
..+.++|||||+......+....+..+|.+|+|+.+...........+..+...+++++ ||+|+++
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSY 193 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 35779999999865433222223346899999998876444555666777777788887 9999986
No 234
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.35 E-value=0.00015 Score=77.69 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCcchhh-HHH-----hhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~n-lrs-----~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
..+.++||||||...... ++. .....++.++||+|++.+ ...+..+..+.. .++ .-||+||+|.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~ 249 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCC
Confidence 346799999998643311 111 112358899999998753 333444433332 233 4578999985
No 235
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.30 E-value=0.00032 Score=73.30 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=35.8
Q ss_pred EEEEeCC------CCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHH----HHHHh----cCCcEEEEEeCC-Cc
Q 002428 859 LLVIDTP------GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKM----RNTEFIVALNKV-RF 921 (923)
Q Consensus 859 L~IIDTP------GhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL----~lLkk----~~iP~IVVLNKI-DL 921 (923)
|.+.-+| |+..+..+|..|+..+|+||||||+++........-| .++.. .++|++|++||. |+
T Consensus 98 ~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 98 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp -------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred cccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 5566666 7888999999999999999999999874222233322 22221 468999999995 55
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.30 E-value=0.00019 Score=81.69 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.+...|+|+|.+++|||||||.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345667999999999999999999864
No 237
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.10 E-value=0.00072 Score=67.81 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-cEEEEEeCCC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVR 920 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i-P~IVVLNKID 920 (923)
..+.++|||||+.... .....+..||.+|+|+.+..........++.++...++ .+.||+|+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 3567999999986433 44556788999999998764222233334445555565 4789999876
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00056 Score=73.76 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+|+|+|+.|+|||||+..|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 239
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00073 Score=74.85 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+|+|+|+.|+|||||+..|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999975
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.00053 Score=73.57 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=43.9
Q ss_pred CcchhhHHHhhccCCCEEEEEEeCCCCC-CHhHH-HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 867 HESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 867 hEsf~nlrs~~ls~aDiVILVVDas~gl-e~qti-EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
++.|..+...++.++|+||+|||++++. ....+ .++..+...++|+|||+||+||+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 5666667777899999999999999763 55443 34555666789999999999985
No 241
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.96 E-value=0.00071 Score=68.24 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=45.2
Q ss_pred CCCEEEEeCCCC-cchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc-CCcEEEEEeCCCc
Q 002428 856 VPGLLVIDTPGH-ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGh-Esf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~-~iP~IVVLNKIDL 921 (923)
.+.++|||||+. ... .....+..+|.+|+++.+..........++..+... +.++.||+|+++.
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPP 132 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCC
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCC
Confidence 467999999986 433 334567889999999987653333444455556553 6789999999874
No 242
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.95 E-value=0.0023 Score=68.33 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
+.++|||||+...... .......||.+|||+.............+..+...+++ +-||+|+++.
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 5599999998654332 23456789999999998765555666677778777776 5688999874
No 243
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.95 E-value=0.0021 Score=68.86 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=47.8
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDL 921 (923)
+.++|||||+...... .......||.+|||+.............+..+...+++++ ||+|+++.
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 4699999998654332 2234578999999999887666677777888887777654 88899875
No 244
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.94 E-value=0.0027 Score=67.09 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh----cCCcEE-EEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM----RNTEFI-VALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk----~~iP~I-VVLNKID 920 (923)
.+.++|||||+..... .....+..||.||+|+.+..........++..+.. .+++++ ||+|+++
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 4679999999864322 22346788999999998754222233334455543 356655 8999986
No 245
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.87 E-value=0.002 Score=68.02 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDL 921 (923)
+.++|||||+...... ....+..||.+|||+.............+..+...+++++ ||+|+++.
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 5699999998643322 2234467899999999877555666667778887788876 89999874
No 246
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.86 E-value=0.00061 Score=73.44 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.++++|+|+.|+||||||+.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999753
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.84 E-value=0.00095 Score=71.13 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=41.5
Q ss_pred EEeCCCCc-chhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 861 VIDTPGHE-SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 861 IIDTPGhE-sf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
|-..|||. .+...+...+..+|+||+|||+..++......+..++ .+.|+|||+||+||+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 44579986 4556777889999999999999987665443333333 578999999999985
No 248
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.66 E-value=0.0022 Score=66.20 Aligned_cols=63 Identities=10% Similarity=-0.055 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~--~iP~IVVLNKID 920 (923)
.+.++|||||+... ......+..||.||+|+.+..........++..+... ++++.||+|++.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 36799999998643 3445566779999999998653223333445555555 468889999874
No 249
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.66 E-value=0.0026 Score=64.74 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcC---------CcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN---------TEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~---------iP~IVVLNKID 920 (923)
.+.++|||||+... ......+..||.+|+|+.+..........++..+...+ ..+.||+|+++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC
Confidence 47799999998543 35566778999999999876422233333444554432 46889999976
No 250
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.59 E-value=0.0039 Score=65.28 Aligned_cols=64 Identities=13% Similarity=0.022 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh------cCCcE-EEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM------RNTEF-IVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk------~~iP~-IVVLNKIDL 921 (923)
.+.++|||||+..... ....+..+|.+|+|+.+..........++..+.. .++++ -||+|++|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 3679999999865432 2334556999999998875433333333443332 36774 489999874
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.002 Score=64.80 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|+.|+|||||++.|.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 489999999999999999875
No 252
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.54 E-value=0.0028 Score=65.35 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHh---HHHHHHHHHh---cCCcEE-EEEeCCCc
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ---TIESLNLLKM---RNTEFI-VALNKVRF 921 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~q---tiEsL~lLkk---~~iP~I-VVLNKIDL 921 (923)
..+.++|||||+.... .....+..||.+|+|+.+....... .+..+..+.. .+++++ ||+|+++.
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 3467999999986443 2344567799999999986522112 2223333322 357764 89999874
No 253
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0029 Score=64.89 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.+.++|||||+... ......+..||.+|+|+.+..........++..+...+++ +.||+|+++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 36799999998643 4445567889999999987642223344455555555554 5689999874
No 254
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.0029 Score=68.96 Aligned_cols=57 Identities=9% Similarity=-0.057 Sum_probs=40.0
Q ss_pred CCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHH---H-HHHH----hcCCcEEEEEeC-CCc
Q 002428 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES---L-NLLK----MRNTEFIVALNK-VRF 921 (923)
Q Consensus 865 PGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEs---L-~lLk----k~~iP~IVVLNK-IDL 921 (923)
.|+..+..+|..|+..+|+||||||+++........- | .++. ..++|++|++|| .|+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDl 260 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 260 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccc
Confidence 4688999999999999999999999987422112221 1 2231 257999999997 465
No 255
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.44 E-value=0.0047 Score=62.07 Aligned_cols=64 Identities=17% Similarity=0.039 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKIDL 921 (923)
.+.++|||||+... ......+..+|.+|+|+.+..........++..+...+++ +.||+|+++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 36799999998643 3445677899999999987643223344455566665654 5688999874
No 256
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.39 E-value=0.0045 Score=62.37 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=44.0
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC---cEEEEEeCCCc
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVRF 921 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~i---P~IVVLNKIDL 921 (923)
+.++|||||+.... .....+..||.+|+|+.+..........++..+...+. .+.||+|+++.
T Consensus 119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp CSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 66999999986432 44556788999999998764333344445566665553 48899999874
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.32 E-value=0.0069 Score=60.36 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+.|+|+|++|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 258
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.24 E-value=0.0015 Score=72.00 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=40.0
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+++| ++.|..++..++..+++||+|||+++........+..++ .+.|+|||+||+||+
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl 111 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLL 111 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGS
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcC
Confidence 4455554 788999988888999999999999985432222222222 278999999999985
No 259
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.20 E-value=0.011 Score=61.47 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcchh
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf~ 871 (923)
.+..+++|.|++|+||||++-.++......+ ...-+ +.+....+ ....+.....+....+.+ .+ ...+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g----~kVli---~~~~~d~r-~~~~i~srlG~~~~~~~~-~~--~~~i~ 78 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYAD----VKYLV---FKPKIDTR-SIRNIQSRTGTSLPSVEV-ES--APEIL 78 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTT----CCEEE---EEECCCGG-GCSSCCCCCCCSSCCEEE-SS--THHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcC----CEEEE---EEeccCch-HHHHHHHhcCCCcccccc-CC--HHHHH
Confidence 4456788999999999998876654221111 00000 00000000 000111111111222322 21 11222
Q ss_pred hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 872 nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
......+...+.-+++||-.+.+....++.+..+...++|+|+++-..|
T Consensus 79 ~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 79 NYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp HHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred HHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 2222222223355788897776766677777777777999999987665
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.15 E-value=0.011 Score=58.39 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|+|++|+|||||+..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 261
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.12 E-value=0.0015 Score=72.13 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=39.0
Q ss_pred EEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 859 L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+..+++ ..+.|..++..+++.+++||+|||+++.. ..+...+..+. .++|+|||+||+||+
T Consensus 49 ~~~v~~-~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~~-~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 49 IQDVSL-TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRFV-GNNKVLLVGNKADLI 109 (368)
T ss_dssp --------CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHHS-SSSCEEEEEECGGGS
T ss_pred cccCCC-CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHHh-CCCcEEEEEEChhcC
Confidence 334444 35788888888999999999999998721 11111112121 278999999999985
No 262
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.02 E-value=0.0018 Score=68.21 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCCCcch-hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCCcC
Q 002428 864 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 864 TPGhEsf-~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKIDLL 922 (923)
.|||... ...+...+..+|+||+|+|+..++......+- ++ +.|+|||+||+||+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIA 59 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGS
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCC
Confidence 4888644 34667888999999999999876554332211 22 89999999999985
No 263
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.02 E-value=0.0025 Score=64.06 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+++|+|++|+|||||+..|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999873
No 264
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.01 E-value=0.0025 Score=72.16 Aligned_cols=108 Identities=10% Similarity=0.021 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcch--h
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--T 871 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEsf--~ 871 (923)
...|+|+|.+|+|||||...|...-.. .++ .+..+....++....+ ....+.|||+.|...+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~----~~~----~t~~~~~d~~r~~~~g-------~~~~~~ifd~~g~~~~r~r 103 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF----IGV----PTREFNVGQYRRDMVK-------TYKSFEFFLPDNEEGLKIR 103 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH----TTC----CEEEEEHHHHHHHHHC-------SCCCGGGGCTTCHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc----cCC----CceEEecchhhhhhcc-------CCCcccccCCCCHHHHHHH
Confidence 356899999999999999998642110 001 1111111111111000 0012356788886322 2
Q ss_pred hHH--------HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEE
Q 002428 872 NLR--------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 916 (923)
Q Consensus 872 nlr--------s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVL 916 (923)
..+ ..++..+.+.++|||+++........++..+...++++|++-
T Consensus 104 e~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 104 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 221 345555778899999987532222333445555566665544
No 265
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.92 E-value=0.0036 Score=60.70 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+|||||+..|.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999875
No 266
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.89 E-value=0.0077 Score=68.88 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
+...|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34568899999999999999775
No 267
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.85 E-value=0.01 Score=63.59 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
+...+++|+|++|+|||||||.|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999998
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.75 E-value=0.011 Score=58.48 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+++|+|++|+|||||+..|++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.72 E-value=0.0039 Score=67.65 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+..+++|+|++|+|||||||.|++..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34579999999999999999998743
No 270
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.68 E-value=0.031 Score=53.83 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+...++|+|++|+|||||++.|.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 271
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.62 E-value=0.012 Score=55.54 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+|||+|+..|..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 272
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.61 E-value=0.035 Score=53.94 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|.|++|+|||||+..|..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 273
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.56 E-value=0.042 Score=54.69 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=26.5
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 882 DiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
+.-+++||=.+.+.+.....+..+...++++|+.+.-.|
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 456778887666655566666655556888888777555
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.013 Score=58.78 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|+|++|+|||||+..|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999877754
No 275
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.46 E-value=0.014 Score=59.87 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCcchhhHH-HhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh----cCCcE-EEEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM----RNTEF-IVALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlr-s~~ls~aDiVILVVDas~gle~qtiEsL~lLkk----~~iP~-IVVLNKIDL 921 (923)
.+.++||||||......+. ......||.+|+|+.+..........++..+.. .++++ .||+|+++.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3679999999864322221 122357999999998754211222223333332 25664 688998753
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.40 E-value=0.0086 Score=65.87 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.|+|.|.+|+|||||+..|..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 33688999999999999988864
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.34 E-value=0.013 Score=62.60 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+...+++|+|++|+|||||||+|++..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 345678999999999999999998754
No 278
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.022 Score=54.91 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|.|++|+|||+|+..|..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998865
No 279
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.30 E-value=0.0089 Score=66.28 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNV 819 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnV 819 (923)
+.-+++|+|++|+|||||||.|++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 445799999999999999999997543
No 280
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.29 E-value=0.013 Score=61.22 Aligned_cols=65 Identities=6% Similarity=-0.160 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCcchhhH-HHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHh----cCCc-EEEEEeCCC
Q 002428 856 VPGLLVIDTPGHESFTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM----RNTE-FIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nl-rs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk----~~iP-~IVVLNKID 920 (923)
.+.++||||||......+ ....+..+|.+|+|+.+..........++..+.. .+++ +.||+|+++
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 467999999986432212 1122367999999998754211222222333322 2566 457889875
No 281
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.28 E-value=0.023 Score=62.91 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+|+|.|++|+|||+|+..|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 34688999999999999988864
No 282
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.23 E-value=0.017 Score=63.44 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+++|+|++|+|||||+..|+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999888864
No 283
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.14 E-value=0.023 Score=62.98 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+|+|+|++|+|||||+.+|+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999875
No 284
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.07 Score=56.73 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
++|+|++|+|||||+..|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
No 285
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.019 Score=61.62 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-.|+|.|.+|+|||||+..|..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3688999999999999988864
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.05 E-value=0.065 Score=59.86 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+...|+|+|++|+|||||...|+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 287
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.05 E-value=0.024 Score=59.50 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-.++|+|++|+|||||+..|++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 288
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.03 E-value=0.03 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+++|+|++|+|||||+..|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999986
No 289
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.99 E-value=0.023 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+|||+|+..|..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998865
No 290
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.015 Score=56.99 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
++...|+|+|++|+|||||++.|++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999986
No 291
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.91 E-value=0.064 Score=56.87 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 389999999999999999864
No 292
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.084 Score=60.43 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|.|++|+|||+|+..|..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999875
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.58 E-value=0.027 Score=62.13 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|.|++|+|||||+..|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999988864
No 294
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.56 E-value=0.016 Score=61.82 Aligned_cols=21 Identities=29% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||||+..|..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.54 E-value=0.03 Score=62.75 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Ll 815 (923)
.-+++|+|++|+|||||+..|+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4468999999999999999775
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.50 E-value=0.2 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
-+|+|+|++|+|||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999874
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.46 E-value=0.02 Score=56.85 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||++.|.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.44 E-value=0.023 Score=55.63 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..+|+|+|++|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999763
No 299
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.39 E-value=0.019 Score=58.25 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+|+|+|++|+|||||++.|++.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 300
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.30 E-value=0.046 Score=62.17 Aligned_cols=23 Identities=0% Similarity=-0.112 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|.|.+|+|||+|+..|+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHH
Confidence 34688999999999999988864
No 301
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.25 E-value=0.022 Score=56.87 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+|+|+|++|+|||||+++|.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999763
No 302
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.23 E-value=0.033 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+|||+|+..|..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998865
No 303
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.18 E-value=0.074 Score=58.68 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||+++|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999975
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.14 E-value=0.029 Score=57.27 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=23.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..++...|+|+|++|+|||||++.|++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456677999999999999999999853
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.14 E-value=0.038 Score=57.40 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.|+|+|.+|+||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.09 E-value=0.022 Score=56.87 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||||++.|++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.07 E-value=0.024 Score=55.65 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||++.|++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999985
No 308
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.061 Score=58.70 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 791 nlRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+.+.|+|.|++|+|||++++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999999875
No 309
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.00 E-value=0.076 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+|||||+..|..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999875
No 310
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.96 E-value=0.14 Score=51.73 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=25.3
Q ss_pred EEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 885 ILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 885 ILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
+++||=.+.+.+..+..+..+...++|+|+.+-..|
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 566776555655557777777777889888876554
No 311
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.95 E-value=0.052 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+++|+|++|+|||+|+..|..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHH
Confidence 34689999999999999999875
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.90 E-value=0.03 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.+|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999874
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.82 E-value=0.098 Score=56.90 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-+++|+|++|+|||+|+..|+.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998875
No 314
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.77 E-value=0.16 Score=54.03 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..++|.|++|+|||||+..|..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999998864
No 315
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.72 E-value=0.067 Score=55.78 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=28.8
Q ss_pred EEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 883 IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 883 iVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
+-+++||=.+.+....+..+..+...++|||+.+-..|
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMD 139 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccc
Confidence 33677887777777677777777678999999887666
No 316
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.70 E-value=0.14 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.68 E-value=0.039 Score=53.93 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
..+|+|+|++|+|||||++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999997643
No 318
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.66 E-value=0.037 Score=51.70 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 002428 795 PICCIMGHVDTGKTKLLDCI 814 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~L 814 (923)
++|+|+|++|||||||++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 319
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.60 E-value=0.067 Score=60.54 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.|+|.|.+|+|||||+..|..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHH
Confidence 34688999999999999888864
No 320
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.59 E-value=0.079 Score=53.49 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 002428 797 CCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llgt 817 (923)
|+|+|.+++|||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999853
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.57 E-value=0.032 Score=55.72 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||++.|.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.56 E-value=0.13 Score=56.55 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++.|.|++|+|||||+-.++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999877754
No 323
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.55 E-value=0.11 Score=53.99 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999875
No 324
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.53 E-value=0.048 Score=61.27 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|+|++|+|||+|+..|..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999988865
No 325
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.52 E-value=0.063 Score=60.43 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.|+|+|++|+|||||+..|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.46 E-value=0.042 Score=55.00 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
...|+|+|++|+|||||++.|++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999999864
No 327
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.36 E-value=0.039 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
..-+++|+|+.|+|||||++.|.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568999999999999999998743
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.34 E-value=0.049 Score=52.32 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++||||||++..|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 329
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.29 E-value=0.041 Score=53.49 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Ll 815 (923)
-+|+|+|++|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999754
No 330
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.29 E-value=0.067 Score=54.49 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
++|+|+|+||+||+|+...|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 331
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.27 E-value=0.041 Score=56.45 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-.|+|+|++|+|||||++.|++.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999999864
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.22 E-value=0.041 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|+.|+|||||++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999976
No 333
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.17 E-value=0.088 Score=57.14 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHhhccCCCEEEEEEeCCCCCC-HhHH-HHHHHHHhcCCcEEEEEeCCCcC
Q 002428 874 RSRGSGLCDIAILVVDIMHGLE-PQTI-ESLNLLKMRNTEFIVALNKVRFS 922 (923)
Q Consensus 874 rs~~ls~aDiVILVVDas~gle-~qti-EsL~lLkk~~iP~IVVLNKIDLL 922 (923)
+...+.++|.||+|+|+..+.. ...+ .+|..+...++|+|||+||+||+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 3346789999999999986443 3322 23333455789999999999985
No 334
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.13 E-value=0.083 Score=56.32 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-.++|+|++|+|||+|+..|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998874
No 335
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.13 E-value=0.084 Score=59.81 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|||||+|+..|..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 336
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.12 E-value=0.043 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998743
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.07 E-value=0.052 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
...+|+|+|++|+|||||++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345699999999999999998864
No 338
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.01 E-value=0.13 Score=48.51 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999875
No 339
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.00 E-value=0.048 Score=51.94 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|||||||++.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999865
No 340
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.96 E-value=0.051 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
-+|+|+|+.|+|||||++.|.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998743
No 341
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.96 E-value=0.17 Score=52.25 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCc--chh---hHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCC
Q 002428 856 VPGLLVIDTPGHE--SFT---NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhE--sf~---nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKID 920 (923)
.+.++|||+||.. .+. ...........-+|||+++..+....+...+..+...++++ -||+|+++
T Consensus 110 ~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~ 180 (228)
T 3of5_A 110 DLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCND 180 (228)
T ss_dssp SCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECC
T ss_pred cCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcC
Confidence 4679999998731 111 11111122234588999987655555566667777788885 47889875
No 342
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.90 E-value=0.12 Score=52.98 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=29.2
Q ss_pred cCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 879 GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 879 s~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
..+| +++||=.+-+ ....++++.|...++|||+.+=..|
T Consensus 90 ~~~D--vIlIDEaQFf-k~~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 90 LGVA--VIGIDEGQFF-PDIVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp HTCS--EEEESSGGGC-TTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred cCCC--EEEEEchhhh-HHHHHHHHHHHHCCCeEEEEecccc
Confidence 3445 5677877777 5567777888888999999887776
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.90 E-value=0.05 Score=57.19 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 344
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.89 E-value=0.055 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+|||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999975
No 345
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.88 E-value=0.055 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
-+++|+|+.|+|||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998743
No 346
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.87 E-value=0.069 Score=51.10 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999865
No 347
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.86 E-value=0.22 Score=51.72 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 883 IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 883 iVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
+-+++||=.+.+....+..+..+...++|||+.+-..|
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccc
Confidence 34677887777766666777777777999999887666
No 348
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.82 E-value=0.052 Score=56.79 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998743
No 349
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.76 E-value=0.12 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|+|||+|+..|..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999987754
No 350
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.75 E-value=0.063 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 351
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.72 E-value=0.13 Score=56.09 Aligned_cols=41 Identities=15% Similarity=-0.030 Sum_probs=30.3
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCCc
Q 002428 881 CDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVRF 921 (923)
Q Consensus 881 aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKIDL 921 (923)
.+.+|+|+.+...........+..+...++|+ -||+|++..
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~ 278 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIP 278 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCcc
Confidence 46788888776544456666778888899986 678898753
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.72 E-value=0.064 Score=52.34 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++||||||++..|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.72 E-value=0.057 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
No 354
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.72 E-value=0.055 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998753
No 355
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.66 E-value=0.058 Score=55.92 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+|+|+|+.|+|||||++.|.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 356
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.66 E-value=0.066 Score=50.50 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++||||||++..|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 357
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.64 E-value=0.059 Score=55.44 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998743
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.63 E-value=0.063 Score=51.55 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|.+||||||+...|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998853
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.60 E-value=0.064 Score=61.53 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+++|+|++|+|||||+..|++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999999864
No 360
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.56 E-value=0.059 Score=56.18 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+|+|+|+.|+|||||++.|.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998753
No 361
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.55 E-value=0.074 Score=54.32 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 002428 794 SPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Ll 815 (923)
..+|+|+|++|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 362
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.54 E-value=0.06 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 363
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.52 E-value=0.06 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+++|+|+.|+|||||++.|.+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999874
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.49 E-value=0.051 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+++|+|+.|+|||||++.|.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 365
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.43 E-value=0.067 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.-+++|+|+.|+|||||++.|.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999985
No 366
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.38 E-value=0.069 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.-+|+|+|+.|+|||||++.|.+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447899999999999999999985
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.36 E-value=0.065 Score=56.60 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4468999999999999999998743
No 368
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.32 E-value=0.064 Score=56.43 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.-+|+|+|++|+|||||++.|++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 344699999999999999999976
No 369
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.31 E-value=0.067 Score=56.53 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34478999999999999999998743
No 370
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.31 E-value=0.066 Score=56.23 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.-+|+|+|+.|+|||||++.|.+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3447899999999999999999874
No 371
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.30 E-value=0.066 Score=56.63 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+|+|+|+.|+|||||++.|.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 372
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.27 E-value=0.033 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+|||||++.|..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 373
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.27 E-value=0.061 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998743
No 374
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.27 E-value=0.082 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
++.++|+|+|++|+||||++..|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 344569999999999999999986
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.25 E-value=0.089 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
++..+|+|+|++||||||+...|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44567999999999999999998653
No 376
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.24 E-value=0.069 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998743
No 377
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.23 E-value=0.063 Score=58.86 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=26.6
Q ss_pred CCCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCCC
Q 002428 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH 892 (923)
Q Consensus 855 k~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas~ 892 (923)
..+.++|||||... .......+..||.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 35679999999543 3345567788999999997753
No 378
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.22 E-value=0.13 Score=55.30 Aligned_cols=39 Identities=15% Similarity=-0.038 Sum_probs=29.1
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCC
Q 002428 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVR 920 (923)
Q Consensus 882 DiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKID 920 (923)
+.+|+|+.+...........+..+...++|+ -||+|++.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~ 262 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL 262 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCc
Confidence 4888888776544456666778888889986 67889875
No 379
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.076 Score=56.10 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|.|++|+|||||+..|..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999875
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.19 E-value=0.057 Score=54.57 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=16.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH-cC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIR-GT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Ll-gt 817 (923)
..+|+|+|++|+|||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 64
No 381
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.19 E-value=0.07 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998743
No 382
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.16 E-value=0.072 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+.-+++|+|+.|+|||||++.|.+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3446899999999999999999874
No 383
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.15 E-value=0.29 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+++.|++|+|||+|+..|..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999864
No 384
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.09 E-value=0.23 Score=54.76 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..++|.|++|+|||+|+..|..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999875
No 385
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.07 E-value=0.15 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+++|+|++|+|||||+..|+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999864
No 386
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.04 E-value=0.069 Score=55.12 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|.|++|+|||+|+..|..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3499999999999999999965
No 387
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.98 E-value=0.085 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|||||||++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.98 E-value=0.076 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999998743
No 389
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.92 E-value=0.23 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.++|.|++|+|||+|+..|..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 390
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.90 E-value=0.093 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|||||||+..|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.88 E-value=0.11 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+..+|+|+|.+|+||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 392
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.82 E-value=0.084 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|||||||++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 393
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.81 E-value=0.082 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 394
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.78 E-value=0.29 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+|||+|+..|..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999875
No 395
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.76 E-value=0.097 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||||...|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 396
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.69 E-value=0.21 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+|||+|+..|..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999964
No 397
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.64 E-value=0.12 Score=50.76 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=22.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 790 ENLRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 790 enlRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
...+..+|+|+|++|+||||+...|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566899999999999999998853
No 398
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.54 E-value=0.094 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
++|+|+|++||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 399
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.51 E-value=0.092 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|||||||+..|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 400
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.48 E-value=0.088 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|+|||||+..|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 401
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.47 E-value=0.091 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|+|||||++.|.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345789999999999999999875
No 402
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.45 E-value=0.34 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.|+|.|++|||||||+..|..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999875
No 403
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.43 E-value=0.069 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.++|.|.+|+|||+|+..|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999987753
No 404
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.35 E-value=0.32 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.|+|+|++|+|||+|+..|...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4899999999999999999753
No 405
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.31 E-value=0.096 Score=50.43 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++||||||+...|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.30 E-value=0.1 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|+.|+|||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999865
No 407
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.29 E-value=0.11 Score=52.32 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|+||+|+|||||++.|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999975
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.28 E-value=0.21 Score=57.29 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHH
Q 002428 794 SPICCIMGHVDTGKTKLLDCI 814 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~L 814 (923)
.-+++|+|++|+|||||+..|
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 446899999999999999995
No 409
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.24 E-value=0.1 Score=55.09 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.|+|||||++.|.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999998864
No 410
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.23 E-value=0.11 Score=55.67 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|+|++|+|||||+..|.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999875
No 411
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.23 E-value=0.11 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|+|++|+||||++..|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 412
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.22 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||++.|.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 413
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.17 E-value=0.12 Score=50.60 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 414
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.17 E-value=0.13 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999863
No 415
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.16 E-value=0.1 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||++|.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4468999999999999999998743
No 416
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.13 E-value=0.13 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++||||||+...|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 417
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.10 E-value=0.1 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-+|+|+|++|+|||||++.|++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999999985
No 418
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.10 E-value=0.13 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..+|+|+|++|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 419
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.05 E-value=0.31 Score=52.71 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=24.2
Q ss_pred CCCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCC
Q 002428 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas 891 (923)
.+.++|||+|+......+ ...+..+|.||+|+.+.
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e 197 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND 197 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc
Confidence 466999999875433322 24567799999998764
No 420
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.96 E-value=0.12 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 421
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.95 E-value=0.11 Score=55.84 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34478999999999999999998743
No 422
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.90 E-value=0.12 Score=57.31 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+.-+++|+|+.||||||||+.|.+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 423
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.89 E-value=0.12 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4468999999999999999998743
No 424
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.83 E-value=0.12 Score=57.41 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4468999999999999999998743
No 425
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.83 E-value=0.15 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|||||||...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 426
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.81 E-value=0.12 Score=56.22 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999999875
No 427
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.80 E-value=0.14 Score=50.81 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 002428 796 ICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Ll 815 (923)
+|+|+|++|+||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.79 E-value=0.1 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
+..+|+|+|.+||||||+...|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999985
No 429
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.79 E-value=0.15 Score=49.56 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
++...|+|+|.+|+||||++..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.74 E-value=0.15 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
....++|+|+.|+|||||+.+|..
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999999864
No 431
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.72 E-value=0.39 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|.|++|+|||+|+..|..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 389999999999999998865
No 432
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.71 E-value=0.12 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.70 E-value=0.13 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4468999999999999999998743
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.67 E-value=0.13 Score=57.57 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||++|.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4468999999999999999998743
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.66 E-value=0.14 Score=51.36 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+.++|+|+|.+|+||||+...|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998853
No 436
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.61 E-value=0.15 Score=49.17 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Ll 815 (923)
++|+|+|++||||||+...|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.53 E-value=0.29 Score=51.27 Aligned_cols=21 Identities=14% Similarity=-0.059 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 002428 795 PICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Ll 815 (923)
.+|++.|.+||||||++-.+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 458999999999999976664
No 438
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.49 E-value=0.39 Score=58.33 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccCCCCcceeecceeeecccccccceeeeccccccCCCCEEEEeCCCCcc---
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~LlgtnVq~geagGIT~qIgat~~p~e~i~ekt~~I~~~~~~k~~~L~IIDTPGhEs--- 869 (923)
+...|+|+|++|+|||+|+..|.. .+.....+..+....++.+|++....
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~---------------------------~l~~~~~p~~l~~~~~~~l~~~~l~~g~~ 242 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQ---------------------------RIVKGDVPEGLKGKRIVSLQMGSLLAGAK 242 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHH---------------------------HHHHTCSCTTSTTCEEEEECC--------
T ss_pred CCCceEEEcCCCCCHHHHHHHHHH---------------------------HHhcCCCchhhcCCeEEEeehHHhhccCc
Q ss_pred --------hhhHHHhhccCCCEEEEEEeCCCCC---------CHhHHHHHHHHHhcCCcEEEEEe
Q 002428 870 --------FTNLRSRGSGLCDIAILVVDIMHGL---------EPQTIESLNLLKMRNTEFIVALN 917 (923)
Q Consensus 870 --------f~nlrs~~ls~aDiVILVVDas~gl---------e~qtiEsL~lLkk~~iP~IVVLN 917 (923)
+..+..........+||+||=.|.+ ......+..++....+.+|.+.|
T Consensus 243 ~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 243 YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecC
No 439
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.47 E-value=0.14 Score=57.06 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 792 lRnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.+.-+++|+|+.|+|||||+++|.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344578999999999999999998743
No 440
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.43 E-value=0.13 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 441
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.43 E-value=0.38 Score=54.72 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|++.|++|||||+|+.+|.+
T Consensus 218 vLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999975
No 442
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=90.40 E-value=0.59 Score=48.92 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCcc--h---hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEEEEEeCCC
Q 002428 856 VPGLLVIDTPGHES--F---TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVR 920 (923)
Q Consensus 856 ~~~L~IIDTPGhEs--f---~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~IVVLNKID 920 (923)
.+.++||+++|... + ..+....-....-||||+++..+....+...+..+...+++.=||+|+++
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~ 200 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKG 200 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCT
T ss_pred cCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 35699999987321 1 01111112233458999998876545556666777777777888999975
No 443
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.40 E-value=0.096 Score=56.71 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgt 817 (923)
.-+|+|+|++|+|||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 446999999999999999999874
No 444
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.38 E-value=0.53 Score=50.60 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.++|.|++|+|||+++..|..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHH
Confidence 4589999999999999998865
No 445
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.37 E-value=0.17 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|+|+|++|+||||+...|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 446
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.37 E-value=0.16 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 447
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.32 E-value=0.08 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|+|||||++.|++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 448
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.28 E-value=0.16 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+..+|+|+|++|||||||...|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3456999999999999999999764
No 449
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.25 E-value=0.16 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|.|++|+|||+|+..|..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 389999999999999998865
No 450
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.25 E-value=0.16 Score=57.17 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|+|.+|+|||+++..|+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999988863
No 451
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.25 E-value=0.17 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIR 815 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Ll 815 (923)
+..+|+|+|++|||||||++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999997
No 452
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.20 E-value=0.16 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+...|+|+|.+|+||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999998865
No 453
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.18 E-value=0.15 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
-.++|+|++|+|||||+..|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 454
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.17 E-value=0.11 Score=57.23 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3468999999999999999998743
No 455
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.17 E-value=0.34 Score=56.19 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=27.1
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCc-EEEEEeCCC
Q 002428 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVR 920 (923)
Q Consensus 882 DiVILVVDas~gle~qtiEsL~lLkk~~iP-~IVVLNKID 920 (923)
+.+|||+.+...........+..+...++| .-||+|++.
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 468899887654445556667777777775 457799875
No 456
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.16 E-value=0.15 Score=59.69 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..++|+|++|+||||++..|+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999998864
No 457
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.09 E-value=0.13 Score=56.57 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
-+|+|+|++|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999999874
No 458
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.06 E-value=0.17 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++||||||++..|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999863
No 459
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.01 E-value=0.18 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 460
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.01 E-value=0.27 Score=58.71 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...|+|+|++|||||+|+..|..
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998864
No 461
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.00 E-value=0.15 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|||||||+++|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998854
No 462
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.98 E-value=0.15 Score=57.10 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
..-+++|+|++||||||||++|.+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3446999999999999999999874
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.84 E-value=0.18 Score=47.57 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|.|++|+|||+|+..|..
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 89999999999999998864
No 464
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.81 E-value=0.51 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|++|+|||+|+..|..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 489999999999999999865
No 465
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.77 E-value=0.15 Score=56.25 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|++|+|||||++.|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999976
No 466
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.70 E-value=0.2 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.++|+|+|++|+|||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 467
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.69 E-value=0.19 Score=47.47 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 468
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.66 E-value=0.16 Score=51.76 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|+|++|+|||||+++|.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999975
No 469
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.64 E-value=0.14 Score=55.71 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 002428 795 PICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llgt 817 (923)
-+++|+|++|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 470
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.63 E-value=0.18 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
..+|+|+|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999965
No 471
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.61 E-value=0.2 Score=48.41 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.59 E-value=0.25 Score=64.48 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
.-.|+|.|++|+|||||+..|..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHH
Confidence 34689999999999999998865
No 473
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=89.59 E-value=0.44 Score=50.13 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCc--ch----hhHHHhhccCCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCC
Q 002428 856 VPGLLVIDTPGHE--SF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKV 919 (923)
Q Consensus 856 ~~~L~IIDTPGhE--sf----~nlrs~~ls~aDiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKI 919 (923)
.+.++||++||.. .+ .......-....-||||+++..+....+...+.++...++++ =||+|++
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v 196 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSW 196 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 3569999998732 11 111112223456789999987655455556666777777775 4678987
No 474
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.57 E-value=0.19 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|+||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 475
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.56 E-value=0.11 Score=57.39 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
.-+++|+|+.||||||||+.|.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 476
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.54 E-value=0.75 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|.|++|+|||+|+..|..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 477
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.53 E-value=0.18 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|++|+||||+...|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999998853
No 478
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.41 E-value=0.2 Score=49.06 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|.+||||||++..|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 479
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.37 E-value=0.1 Score=51.35 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
.|+|+|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 480
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.35 E-value=0.17 Score=57.05 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|+||||||+.|++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999986
No 481
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.32 E-value=0.58 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
..|+|.|++|+|||+|+..|..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3489999999999999999975
No 482
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.28 E-value=0.19 Score=53.80 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+..+|+|+|++|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988753
No 483
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.27 E-value=0.22 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
.+|+|+|.+||||||+...|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 484
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.26 E-value=0.47 Score=47.06 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCcchh----hHHHhhccC-CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCcEE-EEEeCCCc
Q 002428 856 VPGLLVIDTPGHESFT----NLRSRGSGL-CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVRF 921 (923)
Q Consensus 856 ~~~L~IIDTPGhEsf~----nlrs~~ls~-aDiVILVVDas~gle~qtiEsL~lLkk~~iP~I-VVLNKIDL 921 (923)
.+.++||||||..... ......+.. .+.+|+|+.............+..+...+++++ ||+|+++.
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 4679999999754211 011112222 234778887754333445556666777788854 88999874
No 485
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.06 E-value=0.16 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+...|+|+|+.|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999764
No 486
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.06 E-value=0.21 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 487
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.04 E-value=0.18 Score=53.07 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|+|++|+|||||++.|.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999976
No 488
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.01 E-value=0.16 Score=58.55 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 002428 796 ICCIMGHVDTGKTKLLDCIRGT 817 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llgt 817 (923)
+|+|+|++|+||||||++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 489
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.96 E-value=0.19 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 002428 795 PICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 795 p~I~VLG~~GSGKSTLLN~Llg 816 (923)
++|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998853
No 490
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.90 E-value=0.38 Score=62.88 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.-.|+|.|++|+|||||+-.|+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345689999999999999988864
No 491
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.80 E-value=0.22 Score=47.84 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|++|+|||||...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998853
No 492
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.74 E-value=0.1 Score=54.73 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=26.9
Q ss_pred CCEEEEeCCCCcchhhHHHhhccCCCEEEEEEeCC
Q 002428 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM 891 (923)
Q Consensus 857 ~~L~IIDTPGhEsf~nlrs~~ls~aDiVILVVDas 891 (923)
+.++|||||+.. .......+..||.||+|+.+.
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 569999999874 445567788999999999876
No 493
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.74 E-value=0.22 Score=47.25 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 002428 796 ICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 796 ~I~VLG~~GSGKSTLLN~Llg 816 (923)
+|+|+|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 494
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.46 E-value=0.81 Score=54.45 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 002428 794 SPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 794 np~I~VLG~~GSGKSTLLN~Llg 816 (923)
...++|+|++|||||+|+..|..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHH
Confidence 34589999999999999999875
No 495
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.2 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llgtn 818 (923)
+..+|+|+|+.|+|||||++.|++..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45679999999999999999998643
No 496
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.41 E-value=0.25 Score=50.76 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.++|+|+|++|+||||++..|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 497
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.40 E-value=0.22 Score=51.74 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 002428 797 CCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 797 I~VLG~~GSGKSTLLN~Llg 816 (923)
|+|+|++|+|||||+.+|.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999976
No 498
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.32 E-value=0.61 Score=50.33 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=27.8
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCcE-EEEEeCCC
Q 002428 882 DIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVR 920 (923)
Q Consensus 882 DiVILVVDas~gle~qtiEsL~lLkk~~iP~-IVVLNKID 920 (923)
+.+|+|+.+.......+...+..+...++|+ -||+|++.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLL 261 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 4788888866533455666777888888885 47889875
No 499
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.29 E-value=0.42 Score=63.34 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+.-.|+|.|++|+|||||+-.|+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 344688999999999999988864
No 500
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.26 E-value=0.26 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 002428 793 RSPICCIMGHVDTGKTKLLDCIRG 816 (923)
Q Consensus 793 Rnp~I~VLG~~GSGKSTLLN~Llg 816 (923)
+...|+|+|++|+|||||+..|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999964
Done!