BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002431
(922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 357 bits (915), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/389 (45%), Positives = 244/389 (62%), Gaps = 5/389 (1%)
Query: 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360
P+H +L NL NI E + A Y+ L V +A +NLA + +QQG +A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420
Y E +RI P AD N GNT KE+ V A+Q Y RAI I P A+AH+NLAS +KDSG
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480
++ AI SY+ AL L+PDFP+A CNL H LQ VC W D D ++ I+ Q+ + LP
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185
Query: 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXX 540
SV P H++ YP+ I+ ++ + C + PP+ HP + +
Sbjct: 186 SVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKL----SDGRLRVG 241
Query: 541 YVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS 600
YVSSDFGNHP SHLM S+ GMHN + EVFCYALSP+DGT +R + +EA HF+D+S +
Sbjct: 242 YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIP 301
Query: 601 SD-MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVT 659
+ A I++D I IL+N+NGYTKGARNE+FA++PAPIQ ++G+PGT+GA ++DY++T
Sbjct: 302 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 361
Query: 660 DEFVSPLRYAHIYSEKLVHVPHCYFVNDY 688
D+ SP A YSEKL ++PH +F+ D+
Sbjct: 362 DQETSPAEVAEQYSEKLAYMPHTFFIGDH 390
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 138/206 (66%), Gaps = 1/206 (0%)
Query: 704 RSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 763
RS YGLPED ++ FNQLYK+DP W NIL+RVPNS LWLLRFPA GE ++ YA
Sbjct: 514 RSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQ 573
Query: 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823
G+ ++IIF+ VA K+EH+RR LAD+ LDTPLCN HTTG D+LWAG PM+T+P E +
Sbjct: 574 NMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETL 633
Query: 824 ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTA 883
A+RVA S G E+I + +EYE+ AV L D + L+ + K+ R++ PLF+T
Sbjct: 634 ASRVAASQLTCLGC-LELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTK 692
Query: 884 RWVKNLERSYFKMWSLHCSGQKPQHF 909
++ LER Y +MW + +G KP H
Sbjct: 693 QYTMELERLYLQMWEHYAAGNKPDHM 718
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 96/148 (64%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123
P A+ N+AN +E+G+I+ A+R Y A+E+ P FA A SNLAS ++G+L EA
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 124 CRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
++A+ ++P DA+SN+GN +K VQ A CY A++I P FA A SNLA + +SG
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 184 DLNRALQYYKEAVKLKPTFPDAYLNLGN 211
++ A+ Y+ A+KLKP FPDAY NL +
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAH 153
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157
P AD+ +NLA+ +G + EA + R+AL + P AHSNL ++++ QG +QEA
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
Y EA+RI PTFA A+SN+ E D+ ALQ Y A+++ P F DA+ NL +++K G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 218 MPQEAIMCYQRAVQTRPN-AIAFGNLA 243
EAI Y+ A++ +P+ A+ NLA
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%)
Query: 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89
P D+L L I + + + + +AL + P FA + N+A+ +++G + A+ +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 90 YLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
Y AI + P FADA+SN+ + + A QC +A+ +NP DAHSNL ++ K G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 150 LVQEAYSCYLEALRIQPTFAIAWSNLA 176
+ EA + Y AL+++P F A+ NLA
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+A + NLA+ E+G + A+ Y++A+ P F A++NL + L+ G++ EA+ Y
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ + + P+ A +N+GN E + A Y + + + +NLA I+K GN
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
+AI+ Y L++ P D N + + + TD + + ++I
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L ++ Q + +EA+R+ P FA+ Y NM N KE D+ A++ Y AI++ P
Sbjct: 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146
FADA SNLAS + G + EA R AL L P DA+ NL + ++
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR 61
H LA + + G ++AL H +P D +G ++ D + A++
Sbjct: 46 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108
+ P FA+ + N+A+ K+ G+I AI Y A++L+P+F DA+ NLA
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 225/384 (58%), Gaps = 1/384 (0%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62
M LAH+ Y++G ++ A H ++ + P T LLLL +I++Q D + A++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122
P AE Y N+ N +KE+G + AI +Y A+ L+P+F D + NLA+A + G + A Q
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182
AL NP L S+LGNL+KA G ++EA +CYL+A+ QP FA+AWSNL +F
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241
G++ A+ ++++AV L P F DAY+NLGNV K + A+ Y RA+ PN A+ GN
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
LA YYE+G D+AI Y++AI P F +AY NL NALK+ G V EA CYN L L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+H +L NL NI E + A Y+ L V +A +NLA + +QQG +A+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 362 NEVLRIDPLAADGLVNRGNTYKEI 385
E +RI P AD N GNT KE+
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEM 386
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/380 (35%), Positives = 216/380 (56%), Gaps = 1/380 (0%)
Query: 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP 132
+A+ + GD + A R+ + P+ L+S + + RL+ +A A+ NP
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192
LL +A+SNLGN+ K +G +QEA Y ALR++P F + NLA + +GD+ A+Q Y
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251
A++ P +LGN+ KALG +EA CY +A++T+PN A+A+ NL + +G+
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
+AI ++++A+ DP FL+AY NLGN LK+ D A+ Y + LSL P+H NL
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371
+Y E ++ A Y+ + + + NLA K++G+ A+A CYN LR+ P
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
AD L N N +E G + +A++ Y +A+ + P A AH+NLAS + G ++ A+ YK+
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 432 ALLLRPDFPEATCNLLHTLQ 451
A+ + P F +A N+ +TL+
Sbjct: 365 AIRISPTFADAYSNMGNTLK 384
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L +YY+ D+ I A+ L+P F + Y N+ANA KEKG + A Y A+ L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
AD+ +NLA+ +G + EA + R+AL + P AHSNL ++++ QG +QEA Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGD 184
EA+RI PTFA A+SN+ E D
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQD 388
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 435 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 494
L P+ P T LL+ + +C W D + ++V + + V +V+PF ++
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 495 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 554
L +R A +I AS L P P+ +VS+ FG HP L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 555 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612
++F + ++++ +A S +DG+ R R ++A DV+A+ AK I
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 613 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 672
I +L +L G+ G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F P Y
Sbjct: 283 IDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 732
SE ++ + + +D + V +P P R+ GLPE + CFN YK++P+
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792
+LR VP+S LWLL P + RLRA+A AQGV +++F +++ R ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852
FLDT NAHTT +D LW G P++T P E A RVAGSL GL +EM V + +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 853 AVSLALDRQKLQALTNKLKSVRLTCPLF 880
AV+LA D L AL ++ +R +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
+ D R L + AV+ +P A+L L + +G M QR + P + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
L + + + A + +QA P LG+AL+D G+ + A Y + L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 301 PSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
P P L N +W L ++ +A +A G PF L+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS----EDASAAEQ 177
Query: 358 ISC 360
++C
Sbjct: 178 LAC 180
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
A+R +P +AW LA + GD + + L P P+A LG V
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 221 EAIMCYQRAVQTRPN 235
EA + Q+A P
Sbjct: 75 EAAVLLQQASDAAPE 89
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 230/448 (51%), Gaps = 26/448 (5%)
Query: 435 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDP 494
L P+ P T LL+ + +C W D + ++V + + V +V+PF ++
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG-----AVEPFAFLSEDASA 174
Query: 495 MLALEISRKYASHCSIIASRFALPPFNHPVPIPIXXXXXXXXXXXXYVSSDFGNHPLSHL 554
L +R A +I AS L P P+ +VS+ FG HP L
Sbjct: 175 AEQLACARTRAQ--AIAASVRPLAPTRVRSKGPLRVG---------FVSNGFGAHPTGLL 223
Query: 555 MGSVFG--MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612
++F + ++++ +A S +DG+ R R ++A DV+A+ AK I
Sbjct: 224 TVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL-AQASTLHDVTALGHLATAKHIRHHG 282
Query: 613 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIY 672
I +L +L G+ G R E+FA++PAP+QV+++ +PGT+GA ++DY++ D F P Y
Sbjct: 283 IDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFY 342
Query: 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNT 732
SE ++ + + +D + V +P P R+ GLPE + CFN YK++P+
Sbjct: 343 SEHVLRLQGAFQPSDTSRV---VAEP---PSRTQCGLPEQGVVLCCFNNSYKLNPQSMAR 396
Query: 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792
+LR VP+S LWLL P + RLRA+A AQGV +++F +++ R ADL
Sbjct: 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADL 456
Query: 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852
FLDT NAHTT +D LW G P++T P E A RVAGSL GL +EM V + +
Sbjct: 457 FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL-DEMNVADDAAFVAK 515
Query: 853 AVSLALDRQKLQALTNKLKSVRLTCPLF 880
AV+LA D L AL ++ +R +F
Sbjct: 516 AVALASDPAALTALHARVDVLRRASGVF 543
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 182 SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFG 240
+ D R L + AV+ +P A+L L + +G M QR + P + A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
L + + + A + +QA P LG+AL+D G+ + A Y + L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 301 PSHP---QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357
P P L N +W L ++ +A +A G PF L+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS----EDASAAEQ 177
Query: 358 ISC 360
++C
Sbjct: 178 LAC 180
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
A+R +P +AW LA + GD + + L P P+A LG V
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 221 EAIMCYQRAVQTRPN 235
EA + Q+A P
Sbjct: 75 EAAVLLQQASDAAPE 89
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
A++ P +A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 288 EAIQCYNQCLSLQP 301
EAI+ Y + L L P
Sbjct: 121 EAIEYYQKALELDP 134
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 83/134 (61%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL P A+AW NL +AY ++G +EA + ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186
AL L+P +A NLGN QG EA Y +AL + P A AW NL + + GD +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 187 RALQYYKEAVKLKP 200
A++YY++A++L P
Sbjct: 121 EAIEYYQKALELDP 134
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 80/134 (59%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220
AL + P A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 221 EAIMCYQRAVQTRP 234
EAI YQ+A++ P
Sbjct: 121 EAIEYYQKALELDP 134
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 78/128 (60%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+PR AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 159 LEALRIQP 166
+AL + P
Sbjct: 127 QKALELDP 134
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQAD 253
A++L P +A+ NLGN Y G EAI YQ+A++ P +A A+ NL + YY++G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 254 MAILYYKQAIGCDPR 268
AI YY++A+ DPR
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E +P + LG YY+ DYD I ++AL L+P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC 124
R AE + N+ NA+ ++GD D AI YY A+EL P A+AW NL +AY ++G +EA +
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 125 RQALALNP 132
++AL L+P
Sbjct: 127 QKALELDP 134
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
L L P +A NLGN Y + A YY+ L + + + NL Y +QG+Y
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 356 DAISCYNEVLRIDP 369
+AI Y + L +DP
Sbjct: 121 EAIEYYQKALELDP 134
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 34/167 (20%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P +A NLGN +YYK
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN------------AYYK-- 47
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
QG+Y +AI Y + L +DP +A+ N GN Y + G +
Sbjct: 48 --------------------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402
NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y +A+ +
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
P AEA NL +AY G + AI+ Y++AL L P EA NL
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 432 ALLLRPDFPEATCNL 446
AL L P EA NL
Sbjct: 61 ALELDPRSAEAWYNL 75
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E +P + LG YY+ DYD I ++AL L+P
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Query: 65 R 65
R
Sbjct: 135 R 135
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 71/111 (63%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+P AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN + QG
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
A++ P NA A+ NL + YY++G D AI YY++A+ DP EA NLGNA + G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+AL + P A AW NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL PN A+AW NL +AY ++G +EA + ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
AL L+P +A NLGN QG EA Y +AL + P A A NL + G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E +P + LG YY+ DYD I ++AL L+P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
AE + N+ NA+ ++GD D AI YY A+EL PN A+A NL +A ++G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 250
A++L P +A+ NLGN Y G EAI YQ+A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 34/151 (22%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
L L P++ +A NLGN +YYK QG+Y
Sbjct: 69 ALELDPNNAEAWYNLGN------------AYYK----------------------QGDYD 94
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+AI Y + L +DP A+ N GN ++ G
Sbjct: 95 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
A+ G SA + NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
Query: 451 Q 451
Q
Sbjct: 122 Q 122
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 34/150 (22%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN------------AYYK-- 55
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 56 --------------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L P AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
N A+AW NL +AY ++G +EA + ++AL L P +A NLGN + QG
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
A++ P NA A+ NL + YY++G D AI YY++A+ P EA NLGNA + G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%)
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
N A+AW NL +AY ++G +EA + ++AL L P +A NLGN QG EA Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+AL + P A AW NL + + GD + A++YY++A++L P +A NLGN + G
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL PN A+AW NL +AY ++G +EA + ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
AL L P +A NLGN QG EA Y +AL + P A A NL + G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
A++L P +A+ NLGN Y G EAI YQ+A++ PN
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E P + LG YY+ DYD I ++AL L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
AE + N+ NA+ ++GD D AI YY A+EL PN A+A NL +A ++G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
A+ G SA + NL Y +QG+Y +AI Y + L + P A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
AI+ Y +A+ + P AEA NL +AY G + AI+ Y++AL L P+ EA NL +
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121
Query: 451 Q 451
Q
Sbjct: 122 Q 122
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 34/150 (22%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN------------AYYK-- 55
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
QG+Y +AI Y + L + P A+ N GN Y + G +
Sbjct: 56 --------------------QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 96 AIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ P EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352
L L P++ +A NLGN Y + A YY+ L + + NL ++QG
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD +A++YY++A++L P A+ NLGN Y G Q+AI YQ+
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284
A++ P NA A+ + YY++G AI Y++A+ DP +A NLGNA + G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DY I ++AL L+P A + N+ NA+ ++GD AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149
N A AW +AY ++G +A + ++AL L+P A NLGN + QG
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%)
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
N A+AW NL +AY ++G +A + ++AL L+P A NLGN QG Q+A Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217
+AL + P A AW + + GD +A++ Y++A++L P A NLGN + G
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD AI YY A+EL PN A AW NL +AY ++G +A + ++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183
AL L+P A GN QG Q+A Y +AL + P A A NL + G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG Q+A Y +AL + P A AW NL + + GD +A++YY++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERG 250
A++L P A+ GN Y G Q+AI YQ+A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 34/150 (22%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G +AI+ Y + L L P++ A NLGN +YYK
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGN------------AYYK-- 55
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
QG+Y AI Y + L +DP A RGN Y + G
Sbjct: 56 --------------------QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQK 95
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
AI+DY +A+ + P A+A NL +A + G
Sbjct: 96 AIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
A+ G SA + NL Y +QG+Y AI Y + L +DP A N GN Y + G
Sbjct: 2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450
AI+ Y +A+ + P A+A +AY G + AI+ Y++AL L P+ +A NL +
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121
Query: 451 Q 451
Q
Sbjct: 122 Q 122
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y++A+E+ E +P LG YY+ DY I ++AL L+P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115
A+ + NA+ ++GD AI Y A+EL PN A A NL +A ++G
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G AI YY++A+ DP A+ NLGNA G +AI+ Y +
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYA 355
L L P++ +A GN +YYK QG+Y
Sbjct: 69 ALELDPNNAKAWYRRGN------------AYYK----------------------QGDYQ 94
Query: 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
AI Y + L +DP A N GN ++ G
Sbjct: 95 KAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL PN A+AW NL +AY ++G +EA + ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 127 ALALNPLLVDAHSNLGNLMKAQG 149
AL L+P +A NLGN + QG
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A A+ NL + YY++G D AI YY++A+ DP EA+ NLGNA G DEAI+ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 296 CLSLQPSHPQALTNLGN 312
L L P++ +A NLGN
Sbjct: 69 ALELDPNNAEAKQNLGN 85
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+P AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 99 NFADAWSNLASAYMRKG 115
N A+A NL +A ++G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
+A+ NLGN Y G EAI YQ+A++ PN A A+ NL + YY++G D AI YY++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 263 IGCDPRFLEAYNNLGNALKDVG 284
+ DP EA NLGNA + G
Sbjct: 70 LELDPNNAEAKQNLGNAKQKQG 91
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 195 AVKLKPTFPDAYLNLGNVYKALG 217
A++L P +A NLGN + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 229 AVQTRP-NAIAFGNLASTYYERG 250
A++ P NA A NL + ++G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 332 AVTTGLSAP-FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD 390
A+ G SA + NL Y +QG+Y +AI Y + L +DP A+ N GN Y + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 391 AIQDYIRAITIRPTMAEAHANLASAYKDSG 420
AI+ Y +A+ + P AEA NL +A + G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%)
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
N A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 159 LEALRIQPTFAIAWSNLAGLFMESG 183
+AL + P A A NL + G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 IDPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA 425
+DP +A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 426 IKSYKQALLLRPDFPEATCNLLHTLQ 451
I+ Y++AL L P+ EA NL + Q
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQ 88
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 34/116 (29%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P++ +A NLGN +YYK
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN------------AYYK-- 55
Query: 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
QG+Y +AI Y + L +DP A+ N GN ++ G
Sbjct: 56 --------------------QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E +P + LG YY+ DYD I ++AL L+P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 65 RFAECYGNMANAWKEKG 81
AE N+ NA +++G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 76/154 (49%)
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA 129
Y ++ + + KGD D AIR Y ++ PN + L YM G N+A + ++ +
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
L+ +A+ LG+ Q A A+ + +A A+ L ++ G+ ++A+
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
+ Y++ + +KP F AY ++G Y+ G+ EA+
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP--AAASYYKAT 330
Y ++G+ + G D AI+ Y + L P++ + L LG YM+ LP A S K
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFV 66
Query: 331 LAVTTGLSAPF----NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG 386
+ TT A + N + KQ AI + ++ + AD G Y +G
Sbjct: 67 VLDTTSAEAYYILGSANFMIDEKQA-----AIDALQRAIALNTVYADAYYKLGLVYDSMG 121
Query: 387 RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429
AI+ Y + I+I+P A+ ++ AY+ G + A+K +
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408
+ +G++ AI Y +VL+ DP + L+ G TY +IG DAI+ + + + T AEA
Sbjct: 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75
Query: 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
+ L SA +AAI + ++A+ L + +A
Sbjct: 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%)
Query: 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT 308
+G D AI YK+ + DP +E LG D+G ++AI+ + + L + +A
Sbjct: 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77
Query: 309 NLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368
LG+ + AA + +A+ T + + L ++Y G + AI Y + + I
Sbjct: 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137
Query: 369 P 369
P
Sbjct: 138 P 138
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-AFGNLASTYYERGQADMAILYYKQAIG 264
Y+++G+ + G AI Y++ ++ PN + L TY + G + AI K+ +
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
D EAY LG+A + AI + ++L + A LG +Y A
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127
Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
Y+ T+++ G + ++ + Y+ +G +A+ +
Sbjct: 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 65/145 (44%)
Query: 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
D+D I ++ L+ +P E + + + G + AI + L A+A+ L
Sbjct: 20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
SA A ++A+ALN + DA+ LG + + G +A Y + + I+P
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139
Query: 168 FAIAWSNLAGLFMESGDLNRALQYY 192
F A+ ++ + G + A++Y+
Sbjct: 140 FIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88
N + D LG +Y + ++D I E+ + ++P F Y ++ A++ KG D A++
Sbjct: 103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162
Query: 89 YY 90
Y+
Sbjct: 163 YF 164
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE + N+ NA+ ++GD D AI YY A+EL P A+AW NL +AY ++G +EA + ++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 127 ALALNP 132
AL L+P
Sbjct: 63 ALELDP 68
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+A A+ NL + YY++G D AI YY++A+ DPR EA+ NLGNA G DEAI+ Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 295 QCLSLQP 301
+ L L P
Sbjct: 62 KALELDP 68
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228
A AW NL + + GD + A++YY++A++L P +A+ NLGN Y G EAI YQ+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 229 AVQTRP 234
A++ P
Sbjct: 63 ALELDP 68
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY+ DYD I ++AL L+PR AE + N+ NA+ ++GD D AI YY A+EL P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+A+ NLGN Y G EAI YQ+A++ P +A A+ NL + YY++G D AI YY++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 263 IGCDPR 268
+ DPR
Sbjct: 64 LELDPR 69
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160
A+AW NL +AY ++G +EA + ++AL L+P +A NLGN QG EA Y +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 161 ALRIQP 166
AL + P
Sbjct: 63 ALELDP 68
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
+A NLGN QG EA Y +AL + P A AW NL + + GD + A++YY++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 195 AVKLKP 200
A++L P
Sbjct: 63 ALELDP 68
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395
G + + NL Y +QG+Y +AI Y + L +DP +A+ N GN Y + G +AI+ Y
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 396 IRAITIRP 403
+A+ + P
Sbjct: 61 QKALELDP 68
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430
+A+ N GN Y + G +AI+ Y +A+ + P AEA NL +AY G + AI+ Y+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 431 QALLLRP 437
+AL L P
Sbjct: 62 KALELDP 68
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330
EA+ NLGNA G DEAI+ Y + L L P +A NLGN Y + A YY+
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 331 LAV 333
L +
Sbjct: 64 LEL 66
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK G Y +A+E+ E +P + LG YY+ DYD I ++AL L+P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 65 R 65
R
Sbjct: 69 R 69
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
AEA NL +AY G + AI+ Y++AL L P EA NL
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 43
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208
G ++A + +A+ AI + N A L +L RAL +Y +A++L + AY
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 209 LGNVYKALGMPQEAIMCYQRAVQT-RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDP 267
GNVY M +EA +++A++ N F L + + Q +A+ Y ++A+ +
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314
EA G L + G +DEA+ + P H A N G Y
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 89/241 (36%), Gaps = 41/241 (17%)
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130
G E GD + A + AIE A + N A+ L A +AL L
Sbjct: 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL 86
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190
+ A+ GN+ + + +EA + +ALR AG ME+GDL
Sbjct: 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR------------AG--MENGDL----- 127
Query: 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTY 246
+ LG V L P+ A+ QRAV+ N FG +
Sbjct: 128 ---------------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN- 171
Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
G D A+ + DP +A+ N G ++A++ ++ + +QP H A
Sbjct: 172 --EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Query: 307 L 307
L
Sbjct: 230 L 230
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 1/189 (0%)
Query: 216 LGMPQEAIMCYQRAVQ-TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN 274
G ++A + +A++ + +AI + N A+ + + A+ +Y +A+ D AY
Sbjct: 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
GN EA + + L + LG + ++ A Y + + +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
+ + +G +A+S + V DP AD N G TY A++
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 395 YIRAITIRP 403
+AI I+P
Sbjct: 216 LDKAIDIQP 224
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 71/191 (37%)
Query: 45 QLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAW 104
+ DY+ +A+ A Y N AN +++ A+ +Y A+EL + A A+
Sbjct: 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
Query: 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
+ Y+ K EA +AL D LG ++ + A A+ +
Sbjct: 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
A G L+ AL + + P DA+ N G Y ++A+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 225 CYQRAVQTRPN 235
+A+ +P+
Sbjct: 215 MLDKAIDIQPD 225
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ A+ + A++ P +AW L + + A R+ L L P A
Sbjct: 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
L + L ++A + LR P +A I S L+
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 196 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309
Query: 295 QCLSLQ 300
+ L++Q
Sbjct: 310 EALNMQ 315
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
L + ++ A + L T + P +
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + E A+ +Y++AL L+P + + NL
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G NL + G + +A+ + E L +
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ A+ + A++ P +AW L + + A R+ L L P A
Sbjct: 13 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 72
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
L + L ++A + LR P +A I S L+
Sbjct: 73 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 133 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 186
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 187 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 246
Query: 295 QCLSLQ 300
+ L++Q
Sbjct: 247 EALNMQ 252
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 13 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 72
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
L + ++ A + L T + P +
Sbjct: 73 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 133 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 192
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + E A+ +Y++AL L+P + + NL
Sbjct: 193 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 228
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 159 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 218
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G NL + G + +A+ + E L +
Sbjct: 219 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 251
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ A+ + A++ P +AW L + + A R+ L L P A
Sbjct: 27 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 86
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
L + L ++A + LR P +A I S L+
Sbjct: 87 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 147 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 200
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 201 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 260
Query: 295 QCLSLQ 300
+ L++Q
Sbjct: 261 EALNMQ 266
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 27 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 86
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
L + ++ A + L T + P +
Sbjct: 87 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 147 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 206
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + E A+ +Y++AL L+P + + NL
Sbjct: 207 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 242
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 173 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 232
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G NL + G + +A+ + E L +
Sbjct: 233 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 265
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ A+ + A++ P +AW L + + A R+ L L P A
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
L + L ++A + LR P +A I S L+
Sbjct: 96 MALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 295 QCLSLQ 300
+ L++Q
Sbjct: 270 EALNMQ 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
L + ++ A + L T + P +
Sbjct: 96 MALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + E A+ +Y++AL L+P + + NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 182 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 241
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G NL + G + +A+ + E L +
Sbjct: 242 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 274
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 30/246 (12%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ A+ + A++ P +AW L + + A R+ L L P A
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFA--------------------IAWSNLA-G 177
L + L ++A + LR P +A I S L+
Sbjct: 96 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 178 LFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
LF+E +L + AV+L PT PD LG ++ G +A+ C+ A+ RPN
Sbjct: 156 LFLEVKEL------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 236 A-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294
+ + L +T Q++ A+ Y++A+ P ++ + NLG + ++G EA++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 295 QCLSLQ 300
+ L++Q
Sbjct: 270 EALNMQ 275
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 17/216 (7%)
Query: 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
+ G A+L ++ A+ DP+ +EA+ LG + + AI +CL L+P + AL
Sbjct: 36 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 95
Query: 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLS---------------APFNNLAVIYKQQG 352
L + ++ A + L T + P +
Sbjct: 96 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 353 NYADAISCYNEVLRIDPLAADGLV--NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410
+ + + +R+DP + D V G + G A+ + A+++RP
Sbjct: 156 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 215
Query: 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446
L + + E A+ +Y++AL L+P + + NL
Sbjct: 216 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 251
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG G D+A+ C+ LS++P+ LG N A + Y+ L +
Sbjct: 182 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 241
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
G NL + G + +A+ + E L +
Sbjct: 242 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 274
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 85/347 (24%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
N G+ Q A E LR T + +S L + GD N+A+QY+K + L
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116
Query: 200 PTFPD------AYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPNAIAFGNLASTY 246
+ D + NLGN K +G EA +C +R + A NL + Y
Sbjct: 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 247 YERGQA-----------------DMAILYYKQAI---------GCDPRFLEAYNNLGNAL 280
+ +G+ A+ +Y++ + G R A NLGN
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR---ACGNLGNTY 233
Query: 281 KDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
+G AI+ + + L + + + +A +NLGN ++ AA +YK TLA+
Sbjct: 234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293
Query: 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394
L +A SCY + GNTY + AI+
Sbjct: 294 VELGER-------------EVEAQSCY---------------SLGNTYTLLHEFNTAIEY 325
Query: 395 YIRAITIRPTM----AEAHA--NLASAYKDSGHVEAAIKSYKQALLL 435
+ R + I + EA A +L +A+ G E A+K +Q L L
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 128/323 (39%), Gaps = 73/323 (22%)
Query: 70 YGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNLASAYMRKGRLNEAAQC 123
Y + NA+ GD + A++Y+ + L R A + NL + GR +EAA C
Sbjct: 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148
Query: 124 CRQALALNPLLVDAHS------NLGNLMKAQG--LVQEAYSCYLEALRIQPTFAIAWSNL 175
C + L L L D S NLGN+ A+G L Q + + ++
Sbjct: 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIMCYQRA 229
L RA+++Y+E +KL D A NLGN Y LG Q AI +Q
Sbjct: 199 ---------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 230 VQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA 289
++ A FG+ A+ ER A +NLGN+ +G+ ++A
Sbjct: 250 LRI---AREFGDRAA---ER---------------------RANSNLGNSHIFLGQFEDA 282
Query: 290 IQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343
+ Y + L+L + Q+ +LGN Y + A Y+ LA+ L
Sbjct: 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342
Query: 344 LAVIYKQQGNYADAISCYNEVLR 366
+ GN AI + L+
Sbjct: 343 ARACWS-LGNAHSAIGGHERALK 364
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 62/199 (31%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG YY L D+ I ++E LR+ F + A E R
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGD-----------------------RAAERRA 265
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCY 158
N SNL ++++ G+ +AA+ ++ LAL L + EA SCY
Sbjct: 266 N-----SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-------------EAQSCY 307
Query: 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNV 212
+ N L E N A++Y+ + + D A +LGN
Sbjct: 308 ------------SLGNTYTLLHE---FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352
Query: 213 YKALGMPQEAIMCYQRAVQ 231
+ A+G + A+ ++ +Q
Sbjct: 353 HSAIGGHERALKYAEQHLQ 371
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
+ L AA +Y+ L++ T L F NL + GN+ DA+
Sbjct: 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
S Y G+ ++ Y++A+
Sbjct: 268 QSCYS-LGNTYTLLQDYEKAI 287
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 50/235 (21%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAI----R 88
LG Y+ LHDY + + L L A+ GN+ N K G+ D AI R
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 89 YYLVAIELRPNFADAWS--NLASAYMRKGR--------------------LNEAAQCCRQ 126
+ ++ EL +A + NL + Y KG+ L A +
Sbjct: 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172
Query: 127 ALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSN 174
L+L L D A NLGN G ++A + + L I F A+SN
Sbjct: 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 223
L ++ G+ A +YYK+ + L D + +LGN Y L ++AI
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
N L AA Y+ L++ T L F NL + GN+ DA+
Sbjct: 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
S Y G+ ++ Y++A+
Sbjct: 264 QSCYS-LGNTYTLLQDYEKAI 283
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 50/235 (21%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAI----R 88
LG Y+ LHDY + + L L A+ GN+ N K G+ D AI R
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 89 YYLVAIELRPNFADAWS--NLASAYMRKGR--------------------LNEAAQCCRQ 126
+ ++ EL +A + NL + Y KG+ L A +
Sbjct: 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168
Query: 127 ALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSN 174
L+L L D A NLGN G ++A + + L I F A+SN
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 223
L ++ G+ A +YYK+ + L D + +LGN Y L ++AI
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYME-------- 316
+A NLGN LK +G DEAI C + L + + +AL NLGN+Y
Sbjct: 86 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 145
Query: 317 ------------WNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAI 358
N L AA Y+ L++ T L F NL + GN+ DA+
Sbjct: 146 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 205
Query: 359 SCYNEVLRIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
+ + L I D R GN Y +G A + Y + + + + +
Sbjct: 206 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 265
Query: 413 ASAYKDSGHVEAAIKSYKQAL 433
S Y G+ ++ Y++A+
Sbjct: 266 QSCYS-LGNTYTLLQDYEKAI 285
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 50/235 (21%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAI----R 88
LG Y+ LHDY + + L L A+ GN+ N K G+ D AI R
Sbjct: 51 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 110
Query: 89 YYLVAIELRPNFADAWS--NLASAYMRKGR--------------------LNEAAQCCRQ 126
+ ++ EL +A + NL + Y KG+ L A +
Sbjct: 111 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 170
Query: 127 ALALNPLLVD------AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI------AWSN 174
L+L L D A NLGN G ++A + + L I F A+SN
Sbjct: 171 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 230
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 223
L ++ G+ A +YYK+ + L D + +LGN Y L ++AI
Sbjct: 231 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 285
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
N+ A+ Y + + ++P A NR Y ++G A+QD RAI I P ++A+ +
Sbjct: 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86
Query: 413 ASAYKD-SGHVEAAIKSYKQALLLRPDFPEATCNL 446
A + HVEA + YK+AL L PD NL
Sbjct: 87 GLALSSLNKHVEA-VAYYKKALELDPDNETYKSNL 120
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
+ A+ Y +A++ P NA+ F N A+ Y + G A+ ++AI DP + +AY +G
Sbjct: 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310
AL + + EA+ Y + L L P + +NL
Sbjct: 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141
+ + A+ +Y AIEL P A + N A+AY + G A Q C +A+ ++P A+ +
Sbjct: 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86
Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175
G + + EA + Y +AL + P SNL
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCY 361
+ + L GN M+ AA +Y + + + F N A Y + GNYA A+
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412
+ IDP + G + + +A+ Y +A+ + P +NL
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%)
Query: 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
++ K +++ A+ E NP A Y +L +Y + E A+ ++P
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
+++ YG M A A+ YY A+EL P+ SNL A ++
Sbjct: 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427
D A+ L GN ++ A+ Y +AI + P A N A+AY G+ A++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 428 SYKQALLLRPDFPEA 442
++A+ + P + +A
Sbjct: 68 DCERAICIDPAYSKA 82
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--GCDP 267
GN + EAI Y +A + + N A+ YE+G+ + AI A+ G +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 268 R-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
R +++ +GNA +G + + I+ Y + L+ + LT L N E + A
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRN--AEKELKKA 128
Query: 323 AASYY----KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378
A Y KA A G Y + ++ +A+ Y E+++ P A G NR
Sbjct: 129 EAEAYVNPEKAEEARLEGKE---------YFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179
Query: 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
++ +AI D +AI P N AY + A+K Y AL
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEYASAL 227
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 33/241 (13%)
Query: 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLL--LGAIYYQLHDYDMCIARNEEALR 61
A ++ YK+ + +A+EH N +E L D L A Y+ +Y+ I+ +A+
Sbjct: 10 AEGNKFYKARQFDEAIEHYNKAWE---LHKDITYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 62 --LEPR-----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK 114
E R ++ + + NA+ + GD+ I YY ++ AD +
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILT--------- 116
Query: 115 GRLNEAAQCCRQALA---LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171
+L A + ++A A +NP + G + A Y E ++ P A
Sbjct: 117 -KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
Query: 172 WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
+SN A + A+ +A++ P F AY+ Q A+ Y A++
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-------QIAVKEYASALE 228
Query: 232 T 232
T
Sbjct: 229 T 229
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 39/187 (20%)
Query: 10 YKSGSYKQALEHSNSVYERN-PLRTD------NLLLLGAIYYQLHDYDMCIARNEEALRL 62
Y+ G Y+ A+ N E+ +R D + +G Y++L D I +++L
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-T 107
Query: 63 EPRFAECYGNMANAWKE---------------------------KGDIDLAIRYYLVAIE 95
E R A+ + NA KE K D A++ Y I+
Sbjct: 108 EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167
Query: 96 LRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155
P A +SN A+A + EA C +A+ +P V A+ AQ V+E Y
Sbjct: 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT---AQIAVKE-Y 223
Query: 156 SCYLEAL 162
+ LE L
Sbjct: 224 ASALETL 230
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 24/256 (9%)
Query: 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE---- 95
G +Y+ +D I +A L N A A EKG+ + AI A+E
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70
Query: 96 LRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152
+R ++ + +++ + +AY + G L + + +++L H L K + +
Sbjct: 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEK 123
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
E EA + P A + D A++ Y E +K P Y N
Sbjct: 124 ELKKAEAEAY-VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182
Query: 213 YKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFL 270
L EAI +A++ PN + Y + A +A+ Y A+ R
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFV------RAYIRKATAQIAVKEYASALETLDAARTK 236
Query: 271 EAYNNLGNALKDVGRV 286
+A N G++ +++ ++
Sbjct: 237 DAEVNNGSSAREIDQL 252
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 39/297 (13%)
Query: 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI-A 238
++ GDL + + + A+ P +A+ LG Q AI+ QR ++ +PN + A
Sbjct: 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298
LA +Y A K I +P++ K + + + + +S
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKY-----------KYLVKNKKGSPGLTRRMS 184
Query: 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA---VTTGLSAPFNNLAVIYKQQGNYA 355
P L + +Y+E A++ + + TGL V++ G +
Sbjct: 185 KSPVDSSVLEGVKELYLE-------AAHQNGDMIDPDLQTGL-------GVLFHLSGEFN 230
Query: 356 DAISCYNEVLRIDPLAADGLVNR-GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414
AI +N L + P L NR G T R +A++ Y RA+ I+P + NL
Sbjct: 231 RAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 415 AYKDSGHVEAAIKSYKQALLLRPD--------FPEATCNLLHTLQCVCSWEDRDRMF 463
+ + G A+ ++ AL L+ P + N+ L+ S D+ +F
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 13/235 (5%)
Query: 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138
++GD+ + I + AI P A+AW L A ++ L L P + A
Sbjct: 77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
Query: 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF----------MESGDLNRA 188
L Q+A ++ P + N G ++S L
Sbjct: 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Query: 189 LQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LAST 245
+ Y EA PD LG ++ G AI + A+ RP + N L +T
Sbjct: 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256
Query: 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300
+++ A+ Y +A+ P F+ + NLG + ++G EA+ + LSLQ
Sbjct: 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 18/205 (8%)
Query: 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107
D + I E A+ +P AE + + E + AI +EL+PN A L
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 108 ASAYMRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKA-------QGLVQEAYSC 157
A +Y +A + + + NP LV L + +++
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 158 YLEALR-----IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
YLEA I P + L LF SG+ NRA+ + A+ ++P + LG
Sbjct: 200 YLEAAHQNGDMIDPDLQ---TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256
Query: 213 YKALGMPQEAIMCYQRAVQTRPNAI 237
+EA+ Y RA++ +P I
Sbjct: 257 LANGDRSEEAVEAYTRALEIQPGFI 281
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411
GN DA+ CY+E +++DP NR Y + G A +D + + ++P + ++
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPE 441
A+A + E A ++Y++ L + P+
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
GN + G + +A CY EA+++ P + +SN + + + GD +A + + V LKP
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
+ Y + L +EA Y+ ++ N
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 210 GNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268
GN ++G +A+ CY A++ P N + + N ++ Y ++G A + + P
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313
+ + Y+ AL+ + R +EA + Y + L + ++PQ L N+
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
L +GN +G + DA+Q Y AI + P ++N ++AY G + A + + +
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 435 LRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHA 487
L+PD+ + L+ + +E+ R + EG+ N + +Q A
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYE--EGLKHEANNPQLKEGLQNMEA 117
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 58 EALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117
EA++L+P Y N + A+ +KGD A ++L+P++ +S A+A R
Sbjct: 29 EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 88
Query: 118 NEAAQCCRQAL---ALNPLLVDAHSNL 141
EA + + L A NP L + N+
Sbjct: 89 EEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSN 140
G+ID A++ Y AI+L P+ +SN ++AY +KG +A + + + L P +S
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 141 LGNLMKAQGLVQEAYSCYLEALR 163
++ +EA Y E L+
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLK 100
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174
G +++A QC +A+ L+P +SN +G Q+AY + + ++P + +S
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
A A + Y+E +K + P L N+
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
DAY+ LG Y G ++A + ++A++ P+ A A LA + + +A Y++A
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKA 97
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 320
+ D R NN G L + R +EA Q + +L P + NLG + ++
Sbjct: 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQXKKP 157
Query: 321 PAAASYYKATL 331
A Y++ +L
Sbjct: 158 AQAKEYFEKSL 168
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 2/141 (1%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
R DA+ L Y+++G +A R+AL ++P DAH+ L + + + + A
Sbjct: 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADE 92
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGNVYK 214
Y +AL A +N G E A Q EA + L P + NLG V
Sbjct: 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152
Query: 215 ALGMPQEAIMCYQRAVQTRPN 235
P +A ++++++ N
Sbjct: 153 QXKKPAQAKEYFEKSLRLNRN 173
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
+ Y + + ++G+ + A A+E+ P+ ADA + LA + + A + R+A
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKA 97
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR--IQPTFAIAWSNLAGLFMESGDL 185
LA + +N G + Q +EAY LEA + + P + + NL + ++
Sbjct: 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQXKKP 157
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNV 212
+A +Y++++++L P L ++
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEXADL 184
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
LAIR + + P A +NLA Y ++G+ EA C++AL + +P +
Sbjct: 70 LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
SNL L + QG +E Y AL I P A +NLA +++ G A
Sbjct: 129 QLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 189 LQYYKE 194
YKE
Sbjct: 189 ETLYKE 194
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 303 HPQALTNL---GNIYMEWNMLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQ 351
HP T L +Y + N AA LA+ T G ++A NNLAV+Y ++
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98
Query: 352 GNYADAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 401
G Y +A L I P A L N + G+ + Y RA+ I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 402 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
P +A+ NLAS Y G + A YK+ L
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 25/169 (14%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQG 149
P+ A + LA Y + + EAA ALA+ +P + +NL L +G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 150 LVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--- 198
+EA AL I+ P A SNLA L G YY+ A+++
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 199 -----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
P NL + Y G Q+A Y + + TR + FG++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY-KEILTRAHEKEFGSV 207
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 32/203 (15%)
Query: 255 AILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HP---Q 305
A+ ++ +G D P NNL G+ EA + L ++ HP +
Sbjct: 69 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP--------FNNLAVIYKQQGNYADA 357
L+NL + YY+ L + P NNLA Y +QG Y DA
Sbjct: 129 QLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 358 ISCYNEVLRIDPLAADGLVNRGNT-----YKEIGRVTDAIQD---------YIRAITI-R 402
+ Y E+L G VN N +E D +D + +A +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248
Query: 403 PTMAEAHANLASAYKDSGHVEAA 425
PT+ +L + Y+ G +EAA
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAA 271
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 48/248 (19%)
Query: 124 CRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---------------QPT 167
C+QAL L H ++ ++ LV + Y EA + P
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PDAYLNLGNVY---KALGMP 219
A +NLA L+ + G A K A++++ PD L N+ + G
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143
Query: 220 QEAIMCYQRAVQ---TR-----PN-AIAFGNLASTYYERGQADMAILYYKQ--------- 261
+E Y+RA++ TR PN A NLAS Y ++G+ A YK+
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 262 --AIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
++ D + + E + +D E Y C P+ L +LG +Y
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263
Query: 316 EWNMLPAA 323
L AA
Sbjct: 264 RQGKLEAA 271
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNLASAYM 112
+ P A+ N+A + +G + YY A+E+ PN A +NLAS Y+
Sbjct: 121 KFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180
Query: 113 RKGRLNEAAQCCRQAL 128
++G+ +A ++ L
Sbjct: 181 KQGKYQDAETLYKEIL 196
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
LAIR + + P A +NLA Y ++G+ EA C++AL + +P +
Sbjct: 96 LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
+NL L + QG +E Y AL I P A +NLA +++ G +A
Sbjct: 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Query: 189 LQYYKE 194
YKE
Sbjct: 215 ETLYKE 220
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 107/282 (37%), Gaps = 52/282 (18%)
Query: 106 NLASAYMRKGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
NL Y +GR A C+QAL L H ++ ++ LV + Y +A +
Sbjct: 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91
Query: 165 ---------------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PD 204
P A +NLA L+ + G A K A++++ PD
Sbjct: 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151
Query: 205 AYLNLGNVY---KALGMPQEAIMCYQRAV---QTR-----PN-AIAFGNLASTYYERGQA 252
L N+ + G +E YQRA+ QT+ PN A NLAS Y ++G+
Sbjct: 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211
Query: 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312
A YK+ + R E ++ G VD+ N+ + + H +
Sbjct: 212 KQAETLYKEIL---TRAHE---------REFGSVDDE----NKPIWM---HAEEREECKG 252
Query: 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354
+ +YKA + ++ NL +Y++QG +
Sbjct: 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 32/199 (16%)
Query: 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS-LQPS----HPQALTNL---GNIYMEWN 318
P L +NL GR + A+ Q L L+ + HP T L +Y + N
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 319 MLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQGNYAD-------AISCYNE 363
AA+ LA+ T G ++A NNLAV+Y ++G Y + A+ +
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 364 VLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--------RPTMAEAHANLAS 414
VL D P A L N + G+ + Y RA+ I P +A+ NLAS
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 415 AYKDSGHVEAAIKSYKQAL 433
Y G + A YK+ L
Sbjct: 204 CYLKQGKFKQAETLYKEIL 222
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 331 LAVTTGLSAP-----FNNLAVIYKQQGNYADAISCYNEVLRI--------DPLAADGLVN 377
L T+G P N LA++Y+ Q Y DA + N+ L I P A L N
Sbjct: 57 LEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116
Query: 378 RGNTYKEIGRVTDAIQDYIRAITIR--------PTMAEAHANLASAYKDSGHVEAAIKSY 429
Y + G+ +A RA+ IR P +A+ NLA ++ G E Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Query: 430 KQAL-----LLRPDFP 440
++AL L PD P
Sbjct: 177 QRALEIYQTKLGPDDP 192
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNLASAYMRKG 115
P A+ N+A + +G + YY A+E+ PN A +NLAS Y+++G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 116 RLNEAAQCCRQALA 129
+ +A ++ L
Sbjct: 210 KFKQAETLYKEILT 223
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262
DAY+ LG Y G ++A + ++A++ P+ A A LA + + +A Y++A
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA 110
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--SLQPSHPQALTNLGNIYMEWNML 320
+ D R NN G L + R +EA Q + +L P + NLG + ++
Sbjct: 111 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 170
Query: 321 PAAASYYKATL 331
A Y++ +L
Sbjct: 171 AQAKEYFEKSL 181
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156
R DA+ L Y+++G +A R+AL ++P DAH+ L + + + + A
Sbjct: 46 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE 105
Query: 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK--LKPTFPDAYLNLGNVYK 214
Y +AL A +N G E A Q EA + L P + NLG V
Sbjct: 106 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 165
Query: 215 ALGMPQEAIMCYQRAVQTRPN 235
+ P +A ++++++ N
Sbjct: 166 QMKKPAQAKEYFEKSLRLNRN 186
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127
+ Y + + ++G+ + A A+E+ P+ ADA + LA + + A + R+A
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA 110
Query: 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR--IQPTFAIAWSNLAGLFMESGDL 185
LA + +N G + Q +EAY LEA + + P + + NL + ++
Sbjct: 111 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 170
Query: 186 NRALQYYKEAVKLKPTFPDAYLNLGNV 212
+A +Y++++++L P L + ++
Sbjct: 171 AQAKEYFEKSLRLNRNQPSVALEMADL 197
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 63/160 (39%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392
L + Y Q Y A+ +V +P+ + G K +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAI 130
Query: 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 262
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
+P LG ALK++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 323 AASYYKATLAVTTGLS 338
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY 70
K+G Y QA+ VY+ + D L LG Y + D E +L P +
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130
+ + + DLA+ + E P + L A GR +EA + AL L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGL 139
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
P N G + +A E + EAL
Sbjct: 140 RP-------NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
G TY ++ + A+ I+ P L A K+ G + AI S+K AL LRP+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65
++ ++ G Y QA++H +RNP A Y +L ++ + + EE ++LEP
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
F + Y A A + D A+ Y A++L + +A A Y R
Sbjct: 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA----ADGYQR 126
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
+NP L N GN +G +A Y EA++ P A +SN A + + + AL
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230
+ +E ++L+PTF Y +A+ +A+ YQ+A+
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
+ P A N N +KGD A+++Y AI+ P A +SN A+ Y + A
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
+ C + + L P + ++ ++A +A Y +AL + +
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409
Q+G+Y A+ Y E ++ +P A NR Y ++ A++D I + PT + +
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87
Query: 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442
A+A + A+ Y++AL L EA
Sbjct: 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%)
Query: 44 YQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA 103
+Q DY + EA++ P+ A+ Y N A + + + LA++ I+L P F
Sbjct: 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86
Query: 104 WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148
++ A+A +A ++AL L+ +A M AQ
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426
++P A + N+GN + G A++ Y AI P A+ ++N A+ Y + A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 427 KSYKQALLLRPDF 439
K ++ + L P F
Sbjct: 71 KDCEECIQLEPTF 83
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223
+ P A+ N + GD +A+++Y EA+K P Y N Y L Q A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 224 MCYQRAVQTRPNAI 237
+ +Q P I
Sbjct: 71 KDCEECIQLEPTFI 84
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334
LG L +GR D A+ + + L P P+AL L ++ ++ A K +A T
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 335 TGLSAPFNNLA----VIYKQ-------QGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383
+ L+ +Y+Q +G A+S + R++P A + RG Y
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+G A +A+ + T E + LA Y G ++ A+ Y +AL
Sbjct: 130 LLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKAL 178
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
G + AL ++ A+K P P+A L LG+ A+ + V P + +
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78
Query: 243 ASTYY----------ERGQA--DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290
S Y ERG+ + A+ K A +PR+ + G +G D+A
Sbjct: 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138
Query: 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
Q L+L+ + P+ + L +Y+ L A + Y L
Sbjct: 139 ASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKAL 178
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLG----AIYYQLHDYDMCIARNEEAL 60
LA K G ALE+ ++ R P ++L A+Y Q D + E+AL
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 61 -------RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113
R+ PR+A + + G+ D A A+ L + + S LA Y+
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163
Query: 114 KGRLNEAAQCCRQALALNPLLVD 136
GRL+EA +AL P +D
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLD 186
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 26/182 (14%)
Query: 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNL-------LLLGAIYYQLHDYDMCIAR 55
+ L Q+Y G Y AL + NP + L L LG + L + +AR
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 56 NEEALRLEPRFAECYGNMANAW-----------KEKGDIDLAIRYYLVAIELRPNFADAW 104
PR+ Y ++ A+ + KG ++ A+ A + P +A
Sbjct: 69 T-------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164
Y G ++A +QALAL + S L L + G + EA + Y +AL
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180
Query: 165 QP 166
P
Sbjct: 181 AP 182
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVD 136
LAIR + + P A +NLA Y ++G+ EA C++AL + +P +
Sbjct: 70 LAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIAWSNLAGLFMESGDLNRA 188
+NL L + QG +E Y AL I P A +NLA +++ G A
Sbjct: 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 189 LQYYKE 194
YKE
Sbjct: 189 ETLYKE 194
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 303 HPQALTNL---GNIYMEWNMLPAAASYYKATLAV---TTG-----LSAPFNNLAVIYKQQ 351
HP T L +Y + N AA LA+ T G ++A NNLAV+Y ++
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98
Query: 352 GNYADAISCYNEVLRI--------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-- 401
G Y +A L I P A L N + G+ + Y RA+ I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 402 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
P +A+ NLAS Y G + A YK+ L
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 25/169 (14%)
Query: 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQG 149
P+ A + LA Y + + EAA ALA+ +P + +NL L +G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 150 LVQEAYSCYLEALRIQ--------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--- 198
+EA AL I+ P A +NLA L G YY+ A+++
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 199 -----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242
P NL + Y G Q+A Y + + TR + FG++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY-KEILTRAHEKEFGSV 207
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 32/203 (15%)
Query: 255 AILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-----HPQALT 308
A+ ++ +G D P NNL G+ EA + L ++ HP
Sbjct: 69 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128
Query: 309 NLGNIYMEWNMLPAAAS---YYKATLAVTTGLSAP--------FNNLAVIYKQQGNYADA 357
L N+ + A YY+ L + P NNLA Y +QG Y DA
Sbjct: 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Query: 358 ISCYNEVLRIDPLAADGLVNRGNT-----YKEIGRVTDAIQD---------YIRAITI-R 402
+ Y E+L G VN N +E D +D + +A +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248
Query: 403 PTMAEAHANLASAYKDSGHVEAA 425
PT+ +L + Y+ G +EAA
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAA 271
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 48/248 (19%)
Query: 124 CRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---------------QPT 167
C+QAL L H ++ ++ LV + Y EA + P
Sbjct: 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-----PDAYLNLGNVY---KALGMP 219
A +NLA L+ + G A K A++++ PD L N+ + G
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 220 QEAIMCYQRAVQ---TR-----PN-AIAFGNLASTYYERGQADMAILYYKQ--------- 261
+E Y+RA++ TR PN A NLAS Y ++G+ A YK+
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 262 --AIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315
++ D + + E + +D E Y C P+ L +LG +Y
Sbjct: 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263
Query: 316 EWNMLPAA 323
L AA
Sbjct: 264 RQGKLEAA 271
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNLASAYM 112
+ P A+ N+A + +G + YY A+E+ PN A +NLAS Y+
Sbjct: 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180
Query: 113 RKGRLNEAAQCCRQAL 128
++G+ +A ++ L
Sbjct: 181 KQGKYQDAETLYKEIL 196
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 12/194 (6%)
Query: 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210
+ EA + ++ + P F AW A F G+ ++A+ Y A +L YL LG
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448
Query: 211 NVYKALG---MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI---- 263
+ LG + E + Q P + L + + AI +++ A+
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDP--LLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 264 ---GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320
+ + + NLG+A + + D AI NQ L L + T + +Y+ +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566
Query: 321 PAAASYYKATLAVT 334
A ++ +LA++
Sbjct: 567 GLAITHLHESLAIS 580
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 116/298 (38%), Gaps = 61/298 (20%)
Query: 1 MHMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL 60
+H+A H+ SG + SN + +R+P + L +G IYY +C+ + EA
Sbjct: 344 LHLASLHE---SGEKNKLYLISNDLVDRHPEKAVTWLAVG-IYY------LCVNKISEAR 393
Query: 61 RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120
R Y+ + + P F AW A ++ +G ++A
Sbjct: 394 R---------------------------YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 121 AQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173
A L L H LGN++ A +Q +Y+ + + P + +
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDP---LLLN 479
Query: 174 NLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMC 225
L + D+ A+ +++ A+ L KP + + NLG+ Y+ L M AI
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAATWANLGHAYRKLKMYDAAIDA 538
Query: 226 YQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 282
+ + N A +A Y + +AI + +++ P + A + L AL++
Sbjct: 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 16/228 (7%)
Query: 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224
P A+ W + ++ ++ A +Y+ ++ + P F A++ + + G +AI
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428
Query: 225 CYQRAVQT-RPNAIAFGNLASTYYERGQADMAILYYKQAIGC---DPRFLEAYNNLGNAL 280
Y A + + + + L + + G +A Y + + DP L N LG
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL---NELGVVA 485
Query: 281 KDVGRVDEAIQCYNQCLSL-----QPSHPQALT--NLGNIYMEWNMLPAAASYYKATLAV 333
+ + AI + L L P A T NLG+ Y + M AA L +
Sbjct: 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRG 379
+T + +A++Y + AI+ +E L I P + A L+ R
Sbjct: 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 342
V ++ EA + +++ ++ P A + + A S Y + G P+
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445
Query: 343 NLAVIYKQQGNYADAISCYNEVLR-------IDPLAADGL----VNRGNTYKEIGRVTDA 391
L + + Q GN I NE L+ DPL + L N+ + I +A
Sbjct: 446 FLGMQHMQLGN----ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501
Query: 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ + + A ANL AY+ +AAI + Q LLL +
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 62/160 (38%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392
L + Y Q Y A+ +V +P+ + G +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
Query: 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 262
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
+P LG AL ++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 323 AASYYKATLAVTTGLS 338
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY 70
K+G Y QA+ VY+ + D L LG Y + D E +L P +
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130
+ + + DLA+ + E P + L A GR +EA + AL L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
P N G + +A E + EAL
Sbjct: 140 RP-------NEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
N N + + + AI+YY AIEL PN +SN+++ Y+ G L + + +AL +
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 132 P-----LLVDAHSN--LGNLMKA 147
P LL A +N LGN A
Sbjct: 90 PDHSKALLRRASANESLGNFTDA 112
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
N GN EA Y A+ + P + +SN++ ++ +GDL + +++ +A+++K
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 200 PTFPDAYLNLGNVYKALG 217
P A L + ++LG
Sbjct: 90 PDHSKALLRRASANESLG 107
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
+E++ L P Y +A +K + +++ A++L P + + + Y
Sbjct: 267 QESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
A + ++A +LNP V + L L+ QG E+ + + E PT + A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236
+ + GD + A++ Y A +L+ ++ +G + + + I+ Q +
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----IGKATILARQSSQD----- 435
Query: 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
T + + + AI +A DPR +A L + ++DEAI+ +
Sbjct: 436 -------PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
+A+ N F + + N A++YY+ A++L P P Y N+ Y + G ++ I
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 228 RAVQTRPN 235
+A++ +P+
Sbjct: 84 KALEIKPD 91
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 217 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
G P A + Q + A+ N + ++ + AI YY+ AI DP Y+N+
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
G +++ I+ + L ++P H +AL
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
G ++ +++ I + A+ L+P Y N++ + GD++ I + A+E++P+
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
Query: 100 FADAWSNLASAYMRKGRLNEA 120
+ A ASA G +A
Sbjct: 92 HSKALLRRASANESLGNFTDA 112
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 250 GQADMAILYYKQAIGCDPRFLEAY----NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
G+ D+A Q G P +AY N GN +EAI+ Y + L P+ P
Sbjct: 6 GEPDIA-----QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
+N+ Y+ L + L + S A + GN+ DA+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCD 266
N GN + EAI YQ A++ PN + + N+++ Y G + I + +A+
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 267 PRFLEAYNNLGNALKDVGRVDEAI 290
P +A +A + +G +A+
Sbjct: 90 PDHSKALLRRASANESLGNFTDAM 113
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 18/192 (9%)
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
+Y L L D E + + + + L P +P + G +Y A ++
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL-------RIDPLAADGLVNRGN---- 380
++ P+ LA + +QG + ++ + +NE + A+ L +RG+
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 381 -TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE-----AAIKSYKQALL 434
+I + + +Q+ I + I P + +A + +D ++ AAIK +A
Sbjct: 398 IKQYDIAKRLEEVQEKIH-VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456
Query: 435 LRPDFPEATCNL 446
L P +A L
Sbjct: 457 LDPRSEQAKIGL 468
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 187 RALQYYKEAVKLKPTF-PDAY-----LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240
+A +Y + V L+ + DA+ L+LG Y G +R++ P+ I
Sbjct: 20 KAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVA 79
Query: 241 N-LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
L TY + + D+A+ + +P LG AL ++GR DEAI + L L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 300 QPS 302
+P+
Sbjct: 140 RPN 142
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
Y + G + GR EA+ Q + +LG Y++ + + ++A
Sbjct: 11 YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIA 70
Query: 333 VTTGLSAPFN-----NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
AP N L + Y Q Y A+ +V +P+ + G +GR
Sbjct: 71 -----DAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGR 125
Query: 388 VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+AI + A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY 70
K+G Y +A+ VY+ + + L LG Y + D E ++ P +
Sbjct: 20 KAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVA 79
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130
+ + + DLA+ + E P + L A GR +EA + AL L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
P N G + +A E + EAL
Sbjct: 140 RP-------NEGKVHRAIAYSYEQMGSHEEAL 164
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 62/160 (38%)
Query: 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332
Y + G + GR +A+ Q +LG Y++ + + +LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392
L + Y Q Y A+ +V +P+ + G +GR +AI
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
Query: 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+ A+ +RP + H +A +Y+ G E A+ +K+A
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN-LASTYYERGQADMAILYYKQA 262
D L+LG Y G +R++ P+ + L TY + + D+A+ +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
+P LG AL ++GR DEAI + L L+P+ + + Y +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 323 AASYYKATLAVTTGLS 338
A ++K + G S
Sbjct: 163 ALPHFKKANELDEGAS 178
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY 70
K+G Y QA+ VY+ + D L LG Y + D E +L P +
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130
+ + + DLA+ + E P + L A GR +EA + AL L
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
Query: 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162
P N G + +A E + EAL
Sbjct: 140 RP-------NEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
N N + + + AI+YY AIEL PN +SN+++ Y+ G L + + +AL +
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 132 P-----LLVDAHSN--LGNLMKA 147
P LL A +N LGN A
Sbjct: 86 PDHSKALLRRASANESLGNFTDA 108
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
N GN EA Y A+ + P + +SN++ ++ +GDL + +++ +A+++K
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 200 PTFPDAYLNLGNVYKALG 217
P A L + ++LG
Sbjct: 86 PDHSKALLRRASANESLG 103
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Query: 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116
+E++ L P Y +A +K + +++ A++L P + + + Y
Sbjct: 263 QESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 321
Query: 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176
A + ++A +LNP V + L L+ QG E+ + + E PT + A
Sbjct: 322 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 381
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236
+ + GD + A++ Y A +L+ ++ +G + + + I+ Q +
Sbjct: 382 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----IGKATILARQSSQD----- 431
Query: 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293
T + + + AI +A DPR +A L + ++DEAI+ +
Sbjct: 432 -------PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 481
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ 227
+A+ N F + + N A++YY+ A++L P P Y N+ Y + G ++ I
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 228 RAVQTRPN 235
+A++ +P+
Sbjct: 80 KALEIKPD 87
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 217 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276
G P A + Q + A+ N + ++ + AI YY+ AI DP Y+N+
Sbjct: 2 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 61
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307
G +++ I+ + L ++P H +AL
Sbjct: 62 SACYISTGDLEKVIEFTTKALEIKPDHSKAL 92
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
G ++ +++ I + A+ L+P Y N++ + GD++ I + A+E++P+
Sbjct: 28 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 87
Query: 100 FADAWSNLASAYMRKGRLNEA 120
+ A ASA G +A
Sbjct: 88 HSKALLRRASANESLGNFTDA 108
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 250 GQADMAILYYKQAIGCDPRFLEAY----NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305
G+ D+A Q G P +AY N GN +EAI+ Y + L P+ P
Sbjct: 2 GEPDIA-----QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 56
Query: 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358
+N+ Y+ L + L + S A + GN+ DA+
Sbjct: 57 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCD 266
N GN + EAI YQ A++ PN + + N+++ Y G + I + +A+
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 267 PRFLEAYNNLGNALKDVGRVDEAI 290
P +A +A + +G +A+
Sbjct: 86 PDHSKALLRRASANESLGNFTDAM 109
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 18/192 (9%)
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
+Y L L D E + + + + L P +P + G +Y A ++
Sbjct: 274 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 333
Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVL-------RIDPLAADGLVNRGN---- 380
++ P+ LA + +QG + ++ + +NE + A+ L +RG+
Sbjct: 334 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 393
Query: 381 -TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE-----AAIKSYKQALL 434
+I + + +Q+ I + I P + +A + +D ++ AAIK +A
Sbjct: 394 IKQYDIAKRLEEVQEKIH-VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 452
Query: 435 LRPDFPEATCNL 446
L P +A L
Sbjct: 453 LDPRSEQAKIGL 464
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 179 FMESGDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237
+ GD+ ALQ +E ++ +P D AY +GN Y+ LG Q+A+ YQ A++ P++
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 238 AF 239
A
Sbjct: 70 AL 71
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 57 EEALRLEPRFA-ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99
EE L+ EP E Y M NA+++ GD A+ Y AIEL P+
Sbjct: 24 EEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 381 TYKEI---GRVTDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
T KE+ G + +A+Q + P EA+ + +AY+ G + A+ +Y+ A+ L
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 437 PDFP 440
PD P
Sbjct: 66 PDSP 69
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189
+NP L N GN +G A Y EA++ P AI +SN A + + RAL
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235
++L F Y+ A+ +A Y+ A+Q P+
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 62 LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121
+ P A+ N N + +KGD A+R+Y A++ P A +SN A+ + A
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
C + L+ + + + A +A Y +AL++ P+
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%)
Query: 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392
+ L+ N Y ++G+Y A+ YNE ++ DP A NR ++ A+
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451
D I + + + A+ A ++Y+ AL + P EA + + L+
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 19/241 (7%)
Query: 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---- 232
G +E N + V L P+ P ++ +G Y +G E Y T
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKT 123
Query: 233 -RPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAI 290
P IA+G+ + E QA A Q GC L Y L L + ++ E
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAXAAYFTAAQLXKGCHLPXL--YIGLEYGLTNNSKLAE-- 179
Query: 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA--------VTTGLSAPF- 341
+ ++Q LS+ P P +G + + A ++ L VT P
Sbjct: 180 RFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
NNL + ++ YA+A+ + + L + P A G + G +A+ + A+ +
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGL 299
Query: 402 R 402
R
Sbjct: 300 R 300
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 13/216 (6%)
Query: 164 IQPTFAIAWSNLAGLFMESGDLNR-ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222
+ P+ ++W + ++ G N A +Y +A L+ T+ A++ G+ + +A
Sbjct: 85 LYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 223 IMCYQRAVQTRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281
Y A Q + + Y + +A ++ QA+ P + +G
Sbjct: 145 XAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVXHEVGVVAF 204
Query: 282 DVGRVD----------EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATL 331
G E I+ +++ P L NLG++ + A Y++ L
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP-LLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 332 AVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367
+ ++ ++ + I+ GN+ +A+ ++ L +
Sbjct: 264 VLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGL 299
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 10/184 (5%)
Query: 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219
+A ++ T+ AW F + ++A Y A +L L +G Y
Sbjct: 116 KATTLEKTYGPAWIAYGHSFAVESEHDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNS 175
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYK------QAIGCD---PRF 269
+ A + +A+ P + + ++ G+ A ++ +AIG + ++
Sbjct: 176 KLAERFFSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
NNLG+ + + + EA+ + Q L L P + + +G I+ A Y+
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHT 295
Query: 330 TLAV 333
L +
Sbjct: 296 ALGL 299
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY----------DMCIARNEEALRLEP 64
++Q + + + Y+ NPL DNL G + +L + I + EEAL ++P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 65 RFAE---CYGNMANAW--------KEKGDIDLAIRYYLVAIELRPN 99
+ E C GN ++ + K + DLA +++ A++ +P+
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 45/246 (18%)
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP- 234
A + N+AL+ K+A+++ PT + +G Y+A ++ ++A RP
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRA------QMIQIKKATHNRPK 309
Query: 235 --NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
+ + L S+ AI ++K A+ D F AY +L N + G+ A
Sbjct: 310 GKDKLKVDELISS---------AIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDI 360
Query: 293 YNQCLSLQ---PSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVT------TGLSAPF 341
+ + L L+ H + + E++ A +Y L V T L++
Sbjct: 361 FRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL 420
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
L+ C+N L + L+A G V YK G A + Y +A I
Sbjct: 421 KKLST----------KRLCHN-ALDVQSLSALGFV-----YKLEGEKRQAAEYYEKAQKI 464
Query: 402 RPTMAE 407
P AE
Sbjct: 465 DPENAE 470
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG---------------------NLMK 146
A Y RK N+A + ++AL + P H +G + +K
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLK 315
Query: 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
L+ A + A+ FA A+++LA ++ E G + A +++A++L+ D
Sbjct: 316 VDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDD 373
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 636 APIQVSYMGFPGTTGASYIDY-LVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMD 694
APIQ +G P TT + +I+Y +V D++V +SE L+ +P + +
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVEDDYVGS---EECFSETLLRLP---------KDALP 420
Query: 695 VLDPNCQPKRSDYGLPEDKFI--FACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA 752
+ P++ DY L E+ + + K++P I R +
Sbjct: 421 YVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQ 480
Query: 753 AG-------EMRLRAY----AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801
+ E +++Y A A P +++R D+ ++ P
Sbjct: 481 SNGITHPYVERFIKSYLGDSATAHPHSP----------YHQYLRILHNCDMMVN-PFPFG 529
Query: 802 HTTG-TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 860
+T G D++ GL + ++ + L GL E +I N++ EY ERAV LA +
Sbjct: 530 NTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENH 589
Query: 861 QK 862
Q+
Sbjct: 590 QE 591
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 20/236 (8%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
I F A G+ L G++DEA + + L PS N
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--------------NEEKE 132
Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
A S + + S N G+Y AI+ +++L + A+ R +
Sbjct: 133 AQSQLIKSDEMQRLRSQALNAFG-----SGDYTAAIAFLDKILEVCVWDAELRELRAECF 187
Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ G AI D A ++ EA +++ Y G E ++ ++ L L D
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 103/272 (37%), Gaps = 42/272 (15%)
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGL 150
I+L+ +F A +++G+L+EA ++ L NP + L+K+ Q L
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146
Query: 151 VQEAYSCYLEALRIQPTFAIAWSN---------------LAGLFMESGDLNRALQYYKEA 195
+A + + T AIA+ + A F++ G+ +A+ K A
Sbjct: 147 RSQALNAFGSG---DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 196 VKLKPTFPDAYLNLGNVYKALG--------------MPQEAIMCYQRAVQTRP-NAIAFG 240
KLK +A+ + +Y LG + Q+ C+ Q + N +
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263
Query: 241 NLASTYYERGQADMAILYYKQAIGCDPRFLE----AYNNLGNALKDVGRVDEAIQCYNQC 296
A G+ A Y+ + +P E + + + + EAI+ ++
Sbjct: 264 --AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Query: 297 LSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328
L ++P + AL + Y+ M A Y+
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%)
Query: 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
++Y C AL + P A+ + ++ + + D A A+ELRP+ A W+
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142
L + R EA +AL +NP V N+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151
A+E+ PN A ++L Y + AA R+A+ L P + LG +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Query: 152 QEAYSCYLEALRIQPTF-------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
QEA Y AL I P + A+++SN++ + + L RA+ Y + PT
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI--YMQVGGTTPT 277
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
A++ PN A +L Y D A ++A+ P + +N LG L + R
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340
EA+ YN+ L + P + + + N+ Y + AA + + G + P
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 23/218 (10%)
Query: 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297
A+ +L T E + +AI+ A DP+ + + L + + + A+ L
Sbjct: 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 116
Query: 298 SLQPSHPQALTNLGNIYMEWNM------------LPAAASYYK-------ATLAVTTGLS 338
QP + Q LG++ ++ ++ AA + Y+ A L + +
Sbjct: 117 LSQPQYEQ----LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172
Query: 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398
+L V+Y NY A + + + P A G T R +A+ Y RA
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232
Query: 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
+ I P N+A +Y + + A K +A+ ++
Sbjct: 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
A+ + P A+ HA+L Y S + ++A + ++A+ LRPD
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195
+ GN + QGL +EA CY + + QP + +SN A ++ G+ +A+Q ++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 196 VKLKPT 201
++ T
Sbjct: 65 LRYTST 70
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309
E GN+L G EA+ CY+Q ++ QP +P +N
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSN 43
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393
+QG Y +A+ CY++++ P G N+ ++G T AIQ
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%)
Query: 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106
++Y C AL + P A+ + ++ + + D A A+ELRP+ A W+
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142
L + R EA +AL +NP V N+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151
A+E+ PN A ++L Y + AA R+A+ L P + LG +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Query: 152 QEAYSCYLEALRIQPTF-------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201
QEA Y AL I P + A+++SN++ + + L RA+ Y + PT
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI--YMQVGGTTPT 277
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 229 AVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287
A++ PN A +L Y D A ++A+ P + +N LG L + R
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340
EA+ YN+ L + P + + + N+ Y + AA + + G + P
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
L V+Y NY A + + + P A G T R +A+ Y RA+ I P
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436
N+A +Y + + A K +A+ ++
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
A+ + P A+ HA+L Y S + ++A + ++A+ LRPD
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 20/236 (8%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 86
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322
I F A G+ L G++DEA + + L PS N
Sbjct: 87 IQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--------------NEEKE 132
Query: 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY 382
A S + S N G+Y AI+ +++L + A+ R +
Sbjct: 133 AQSQLIKSDEXQRLRSQALNAFG-----SGDYTAAIAFLDKILEVCVWDAELRELRAECF 187
Query: 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438
+ G AI D A ++ EA +++ Y G E ++ ++ L L D
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 21/142 (14%)
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGL 150
I+L+ +F A +++G+L+EA ++ L NP + L+K+ Q L
Sbjct: 87 IQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEXQRL 146
Query: 151 VQEAYSCYLEALRIQPTFAIAWSN---------------LAGLFMESGDLNRALQYYKEA 195
+A + + T AIA+ + A F++ G+ +A+ K A
Sbjct: 147 RSQALNAFGSG---DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 196 VKLKPTFPDAYLNLGNVYKALG 217
KLK +A+ + +Y LG
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLG 225
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 45/246 (18%)
Query: 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP- 234
A + N+AL+ K+A+++ PT + G Y+A + ++A RP
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQ------IKKATHNRPK 309
Query: 235 --NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
+ + L S+ AI ++K A D F AY +L N + G+ A
Sbjct: 310 GKDKLKVDELISS---------AIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDI 360
Query: 293 YNQCLSLQ---PSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVT------TGLSAPF 341
+ + L L+ H + + E++ A +Y L V T L++
Sbjct: 361 FRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSAL 420
Query: 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
L+ C+N L + L+A G V YK G A + Y +A I
Sbjct: 421 KKLST----------KRLCHN-ALDVQSLSALGFV-----YKLEGEKRQAAEYYEKAQKI 464
Query: 402 RPTMAE 407
P AE
Sbjct: 465 DPENAE 470
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG---------------------NLMK 146
A Y RK N+A + ++AL + P H G + +K
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLK 315
Query: 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204
L+ A + A FA A+++LA + E G + A +++A++L+ D
Sbjct: 316 VDELISSAIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDD 373
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK + AL+H + E +P + A+Y++ DY+ C E+A+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 65 RFAECYGNMANAWKEKGD 82
E Y +A A+ G+
Sbjct: 70 ENREDYRQIAKAYARIGN 87
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
+A+K+K D D A+++Y A EL P +N A+ Y KG N+ + C +A+
Sbjct: 13 DAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG Y+ D+D + ++A L+P N A + EKGD + AIE+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 99 NFADAWSNLASAYMRKG 115
+ + +A AY R G
Sbjct: 70 ENREDYRQIAKAYARIG 86
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK + AL+H + E +P + A+Y++ DY+ C E+A+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 65 RFAECYGNMANAWKEKGD 82
E Y +A A+ G+
Sbjct: 70 ENREDYRQIAKAYARIGN 87
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
+A+K+K D D A+++Y A EL P +N A+ Y KG N+ + C +A+
Sbjct: 13 DAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
LG Y+ D+D + ++A L+P N A + EKGD + AIE+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 99 NFADAWSNLASAYMRKG 115
+ + +A AY R G
Sbjct: 70 ENREDYRQIAKAYARIG 86
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 9/163 (5%)
Query: 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM 73
+Y QA + + E +P + L + Y+ + +D C EA R P E
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378
Query: 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN---------EAAQCC 124
A +K D D A++ Y +AIEL + +A + L EA
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167
+A L+P A L + Q + EA + + E+ + T
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--PNFADAWSNLASAYMRKGRLNEAAQ 122
++A + N + D AI+YY A+EL+ P F +SNL++ Y+ G L + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVE 60
Query: 123 CCRQALALNP-----LLVDAHSNLG 142
+AL L P LL A +N G
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEG 85
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221
L+ P F +SNL+ ++ GDL + ++ +A++LKP + L + + LG +
Sbjct: 35 LKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91
Query: 222 AIM 224
A+
Sbjct: 92 AMF 94
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCY 293
A+A + + ++ + D AI YY A+ DP F Y+NL VG + + ++
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMS 62
Query: 294 NQCLSLQPSHPQAL 307
+ L L+P + + L
Sbjct: 63 TKALELKPDYSKVL 76
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
L ++GN + + DAI+ Y A+ ++ P ++NL++ Y G ++ ++ +
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMSTK 64
Query: 432 ALLLRPDF 439
AL L+PD+
Sbjct: 65 ALELKPDY 72
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
QA+ G I + W + S K + A + L A F NLA+ Y + Y A+ C ++
Sbjct: 286 QAVIQYGKI-VSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
L +D GL RG + A D+ + + + P
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
QA+ G I + W + S K + A + L A F NLA+ Y + Y A+ C ++
Sbjct: 286 QAVIQYGKI-VSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343
Query: 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403
L +D GL RG + A D+ + + + P
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 62/266 (23%)
Query: 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQA 262
+ +L LG A G +A+ + AV P N IA+ A+ + G++ A+ +
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 63
Query: 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ----------------- 305
I F A G+ L G++DEA + + L PS +
Sbjct: 64 IALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRL 123
Query: 306 ---------------ALTNLGNIY------MEWNMLPA-----------AASYYKATLAV 333
A+T L I E L A A S KA +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183
Query: 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP------------LAADGLVNRGNT 381
+ + F ++ +Y Q G++ ++S E L++D + L+
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243
Query: 382 YKEIGRVTDAIQDYIRAITIRPTMAE 407
GR TDA Y P++AE
Sbjct: 244 LIRDGRYTDATSKYESVXKTEPSVAE 269
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 65/352 (18%), Positives = 116/352 (32%), Gaps = 76/352 (21%)
Query: 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKE 194
V+ H LG + A G + +A S + A+ P IA+ A +F+ G AL +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 62
Query: 195 AVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------------------- 235
+ LK F A L G++ G EA +++ +++ P+
Sbjct: 63 VIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQR 122
Query: 236 ----------------AIAFGN---------------LASTYYERGQADMAILYYKQAIG 264
AI F + A + + G+ AI K A
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA 324
EA+ + +G + ++ +CL L H + + + ++ +A
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242
Query: 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT--- 381
+ G Y DA S Y V + +P A+ V
Sbjct: 243 ELIR----------------------DGRYTDATSKYESVXKTEPSVAEYTVRSKERICH 280
Query: 382 -YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432
+ + + +AI+ + P A + A AY + AI+ Y+ A
Sbjct: 281 CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA---QGL 150
I L+ +F A +++G+L+EA ++ L NP + L+KA Q L
Sbjct: 64 IALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRL 123
Query: 151 VQEAYSCYLEALRIQPTFAIAWSN---------------LAGLFMESGDLNRALQYYKEA 195
+A + A T AI + + A F++ G+ +A+ K A
Sbjct: 124 RSQALDAFDGA---DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 196 VKLKPTFPDAYLNLGNVYKALG 217
KLK +A+ + +Y LG
Sbjct: 181 SKLKSDNTEAFYKISTLYYQLG 202
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 72 NMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131
++ NA ++ D + A +Y AIEL P+ ++N A+ Y + + E Q C +A+ +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72
Query: 132 -------PLLVDAHSNLGNLMKAQ 148
L+ A S GN + Q
Sbjct: 73 RETRADYKLIAKAMSRAGNAFQKQ 96
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
AIA +L + Y++ + A ++Y +AI DP + YNN + + E +Q +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 296 CLSLQPSH-------PQALTNLGNIYMEWNMLPAAASYYKATLA 332
+ + +A++ GN + + N L A ++ +L+
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-- 62
L + YK +++A H + E +P A+Y++ + C+ E+A+ +
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 63 EPR-----FAECYGNMANAWKEKGDIDLAIRYY 90
E R A+ NA++++ D+ LA++++
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
Length = 128
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64
L + YK + AL+H + E +P ++ A+Y++ DY+ C E+A+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 65 RFAECYGNMANAWKEKGD 82
E Y +A A+ G+
Sbjct: 70 ENREDYRMIAYAYARIGN 87
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
+A+K+K D D A+++Y A EL P N A+ Y KG N+ + C +A+
Sbjct: 13 DAYKKK-DFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAI 65
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL-R 97
LG Y+ D+D + ++A L+P N A + EKGD + AIE+ R
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 98 PNFAD------AWSNLASAYMRKGRLNEAAQCCRQALA 129
N D A++ + ++Y ++ + +A ++LA
Sbjct: 70 ENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLA 107
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 8/190 (4%)
Query: 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98
L Y + DY A E+AL+ +P+ + A ++ D A + A+ ++P
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 99 NFADAWSNLASAYMRKGRLNEAAQCC---RQALA--LNPLLVDAHSNLGNLMKAQGLVQE 153
+ A+ +N + GRLN A+ +ALA P A+ N G QG
Sbjct: 74 DSAEINNNYG--WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131
Query: 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG-NV 212
A + +L QP F A+ LA M +G L A Y+K+ L LG +
Sbjct: 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191
Query: 213 YKALGMPQEA 222
KALG Q A
Sbjct: 192 AKALGNAQAA 201
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG- 210
++A + +AL+ P +AW A ++ ++A + +++A+ +KP + N G
Sbjct: 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
Query: 211 NVYKALGMPQEAIMCYQRAVQ--TRPNA-IAFGNLASTYYERGQADMAILYYKQAIGCDP 267
+ L P E++ + +A+ T P IA N ++GQ +A Y K+++ P
Sbjct: 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 268 RFLEAYNNLGNALKDVGRVDEA 289
+F A+ L G++ +A
Sbjct: 145 QFPPAFKELARTKMLAGQLGDA 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIR 402
LA+ Y + +Y A + + L+ DP + R Y+ + +V D Q+ R A++I+
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIK 72
Query: 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462
P AE + N + A +Y L P +P T + + + +CS +
Sbjct: 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP--TPYIANLNKGICS--AKQGQ 128
Query: 463 FSEVEGIIRRQVNMSVLPSVQP-FHAIAYPIDPMLALEIS------RKYASHCSII 511
F E ++R +++ P P F +A MLA ++ +KY S ++
Sbjct: 129 FGLAEAYLKR--SLAAQPQFPPAFKELAR--TKMLAGQLGDADYYFKKYQSRVEVL 180
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY------------YKQAIGC 265
+ QE I+ + A+ A YERG +LY + QA+
Sbjct: 19 LQQEVILARXEQI-LASRALTDDERAQLLYERG-----VLYDSLGLRALARNDFSQALAI 72
Query: 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311
P E +N LG L G D A + ++ L L P++ A N G
Sbjct: 73 RPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364
Q L G +Y + A + + LA+ FN L + Q GN+ A ++ V
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSV 103
Query: 365 LRIDPLAADGLVNRG 379
L +DP +NRG
Sbjct: 104 LELDPTYNYAHLNRG 118
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434
L RG Y +G A D+ +A+ IRP E L +G+ +AA +++ L
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 435 LRPDFPEATCN 445
L P + A N
Sbjct: 106 LDPTYNYAHLN 116
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 125 RQALALNPLLVDAHSNL----GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
Q LA L D + L G L + GL A + + +AL I+P ++ L
Sbjct: 29 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLT 88
Query: 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210
++G+ + A + + ++L PT+ A+LN G
Sbjct: 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE AN + + D + AI++Y AIEL P+ A + N + AY+R A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
A+ L+ + + A G + A Y ++++P
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ +G+ A++ Y + ++P A Y E N + ++ +A
Sbjct: 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMK----YQECNKIVKQKAFERA 129
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%)
Query: 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91
R + L Y++ DY+ I +A+ L P A YGN + A+ A+
Sbjct: 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
AIEL + + A++ M G+ A + + + P DA
Sbjct: 65 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%)
Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
Y + +Y +AI Y++ + ++P A NR Y A+ D RAI + +
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 408 AHANLASAYKDSGHVEAAIKSYKQALLLRP 437
+ A++ G AA++ Y+ + ++P
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKP 105
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 233 RPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292
R +I A YYE + D+A Y I R +A+ LG + D+A++C
Sbjct: 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87
Query: 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327
Y + + L P+ + + + + ++ A Y+
Sbjct: 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 349 KQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
K+QGN Y +A +CY + +PL A NR Y ++ + A+ D RA+ +
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+AH L G + ++SY +A+
Sbjct: 73 DGQSVKAHFFL-------GQCQLEMESYDEAI 97
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
EA +CY A+ P A+ ++N A +++ +AL + A++L A+ LG
Sbjct: 27 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86
Query: 213 YKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 241
+ EAI QRA + + FG+
Sbjct: 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 108 ASAYMRKGR-LN-------EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159
A A M KG+ LN EA +A+ L P LV+A + LG + +G V A++C+
Sbjct: 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161
Query: 160 EALRIQPTFAIAWSNLA----GLFMESGDLNR-----ALQYYKEAVKLKPTFPDAYLNLG 210
AL ++ NL+ L +SGD + +++ K AV++ ++ LG
Sbjct: 162 GAL-THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220
Query: 211 NVYKAL--------GMPQEAIMCYQRAVQTRPNAIAFGNL----ASTY-YERGQADMAIL 257
N Y +L + Q+A+ Y +A + A + +L A+ + YE + A+
Sbjct: 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE-ALE 279
Query: 258 YYKQAIGCDP----------RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303
+ QA DP + LE + L + L+ G+ + + + SL+P+H
Sbjct: 280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAH 334
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128
A++L P +AW+ L Y +KG + A C AL
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA------IAWSNLAGLFMESGDLNRALQ 190
A NLGN G ++A + + L I F IA+SNL ++ G+ A +
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 191 YYKEAVKLKPTFPDAYL------NLGNVYKALGMPQEAI 223
YYK+ + L D + +LGN Y L ++AI
Sbjct: 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 109
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 272 AYNNLGNALKDVGRVDEAIQCYNQCLSL------QPSHPQALTNLGNIYMEWNMLPAAAS 325
A+ NLGN +G +A+ + Q L + + + A +NLGN Y+ A+
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 326 YYKATL 331
YYK TL
Sbjct: 71 YYKKTL 76
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 41/182 (22%)
Query: 205 AYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPNAIAFGNLASTYYERGQADMAIL 257
A+ NLGN + LG ++A++ +++ + IA+ NL + Y G+ + A
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW 317
YYK+ + L LKD R EA CY +LGN Y
Sbjct: 71 YYKKTL-----------LLARQLKD--RAVEAQSCY---------------SLGNTYTLL 102
Query: 318 NMLPAAASYYKATLAVTTGLSAPFN------NLAVIYKQQGNYADAISCYNEVLRIDPLA 371
A Y+ LA+ L +L Y GN+ A+ + L I
Sbjct: 103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162
Query: 372 AD 373
D
Sbjct: 163 GD 164
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAE------AHANLASAYKDSGHVEAAIKSYK 430
N GNT+ +G DA+ + + + I + A++NL +AY G E A + YK
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 431 QALLL 435
+ LLL
Sbjct: 74 KTLLL 78
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 40/169 (23%)
Query: 67 AECYGNMANAWKEKGDIDLAI----RYYLVAIELRPNFAD--AWSNLASAYMRKGRLNEA 120
+GN+ N G+ A+ + L+A E A+ A+SNL +AY+ G A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180
++ ++ L L L D EA SCY +L +
Sbjct: 69 SEYYKKTLLLARQLKDR-------------AVEAQSCY---------------SLGNTYT 100
Query: 181 ESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAI 223
D +A+ Y+ + + + D A +LGN Y ALG +A+
Sbjct: 101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
A YYE + D+A Y I R +A+ LG + D+A++CY + + L P
Sbjct: 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYY 327
+ + + + + ++ A Y+
Sbjct: 97 TQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 349 KQQGN-------YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401
K+QGN Y +A +CY + +PL A NR Y ++ + A+ D RA+ +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433
+AH L G + ++SY +A+
Sbjct: 68 DGQSVKAHFFL-------GQCQLEMESYDEAI 92
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212
EA +CY A+ P A+ ++N A +++ +AL + A++L A+ LG
Sbjct: 22 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81
Query: 213 YKALGMPQEAIMCYQRAVQ-TRPNAIAFGN 241
+ EAI QRA + + FG+
Sbjct: 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y Q
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI Y + ++
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 340 PFNNLAVIYK--QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
PF A+ + + N + A++ + E++ DP + G Y+ + R DAI Y +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 398 AITI 401
I +
Sbjct: 67 GIEV 70
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
LA + + A A+ +++ + DP ++ Y +LG + + R D+AI Y Q
Sbjct: 12 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 65
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231
LA ++ + +RAL ++E V+ P + Y +LG +Y+ L +AI Y + ++
Sbjct: 12 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 68
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 340 PFNNLAVIYK--QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397
PF A+ + + N + A++ + E++ DP + G Y+ + R DAI Y +
Sbjct: 6 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 65
Query: 398 AITI 401
I +
Sbjct: 66 GIEV 69
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAY 206
++G +Q+A +EA++ P A S+ L GD RA + +++KL P +
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIKLFPEYLPGA 68
Query: 207 LNLGNVYKA 215
L ++ KA
Sbjct: 69 SQLRHLVKA 77
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE AN + + D + AI++Y AIEL P+ A + N + AY+R A +
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
A+ L+ + + A G + A Y ++++P
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 120
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%)
Query: 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91
R + L Y++ DY+ I +A+ L P A YGN + A+ A+
Sbjct: 20 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDAT 79
Query: 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137
AIEL + + A++ M G+ A + + + P DA
Sbjct: 80 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 38 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAA 97
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQA 306
+ +G+ A++ Y + ++P A
Sbjct: 98 SNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|1D2I|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1D2I|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|A Chain A, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1DFM|B Chain B, Crystal Structure Of Restriction Endonuclease Bglii
Complexed With Dna 16-Mer
pdb|1ES8|A Chain A, Crystal Structure Of Free Bglii
Length = 223
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387
K + +T G P +N ++ Y+Q N ++++ YN V + P+ GL+ T +I
Sbjct: 125 KVAIIITKGHXFPASNSSLYYEQAQNQLNSLAEYN-VFDV-PIRLVGLIEDFETDIDIVS 182
Query: 388 VTDAIQDYIRAITIRPTM 405
T A + Y R IT R T+
Sbjct: 183 TTYADKRYSRTITKRDTV 200
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126
AE AN + + D + AI++Y AIEL P+ A + N + AY+R A +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 127 ALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166
A+ L+ + + A G + A Y ++++P
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 112
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 220 QEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278
+ AI Y +A++ P NAI +GN + Y A+ +AI D ++++ Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329
+ +G+ A++ Y + ++P A Y E N + ++ +A
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMK----YQECNKIVKQKAFERA 136
>pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7
pdb|1YA0|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Smg7
Length = 497
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 307 LTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366
L +LG+I N A SYY+ + P+N LA++ +G++ I Y +
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214
Query: 367 ID---PLAADGL---VNRGNTYKEIGRVTDAIQDYIRAI 399
+ P A+ L +++ ++ + + D+I+A
Sbjct: 215 VKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAF 253
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 140 NLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK 199
+LG++ + + +A S Y A ++ P+ ++ LA L GD + YY ++ +K
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 200 PTFPDAYLNL 209
FP A NL
Sbjct: 217 FPFPAASTNL 226
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407
Y + ++ +A+ Y E+++ P A G NR ++ +AI D +AI P
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---- 69
Query: 408 AHANLASAYKDSGHVEAAIKSYKQAL 433
N AY + A+K Y AL
Sbjct: 70 ---NFVRAYIRKATAQIAVKEYASAL 92
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN-RALQYYKEAVKLK 199
+G+LM+ + +A Y ++ RI P W+ L GL G N ++ ++ A+
Sbjct: 136 MGDLMRYKENYPKAQEYYEQSCRINPADGAVWNQL-GLISSLGAKNLESVYFHTRALHAT 194
Query: 200 PTFPDAYLNLGNVYK 214
FP A L N++K
Sbjct: 195 MEFPTASGGLTNIFK 209
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299
Y+ G +I +++AI DP + + G AL ++ R +EA+ CYN +++
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295
A+ N A+ + + D A +AI D ++A AL+ +GR+D+A+ +
Sbjct: 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124
Query: 296 CLSLQPSHP---QALTNL 310
C+SL+P + +AL N+
Sbjct: 125 CVSLEPKNKVFQEALRNI 142
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
A Y E + D+A Y I R +A+ LG + D+A++CY + + L P
Sbjct: 37 FAKLYXEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
Query: 302 SHPQALTNLGNIYMEWNMLPAAASYY 327
+ + + + ++ A Y+
Sbjct: 97 XQKDLVLKIAELLCKNDVTDGRAKYW 122
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431
+D L + GN + AI Y +A++I P +N A+AY SG E A + +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 432 ALLLRPDFPEATCNL 446
A ++ P + +A L
Sbjct: 71 ATVVDPKYSKAWSRL 85
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 38/103 (36%)
Query: 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336
GNA +AI Y Q LS+ P++P L+N Y AA + V
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379
S ++ L + +Y A Y + + + + RG
Sbjct: 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301
L TY E Q D A+ + + A+ DP + A+ LG L+ G A Q + L+
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 302 S 302
S
Sbjct: 85 S 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,158,235
Number of Sequences: 62578
Number of extensions: 1126190
Number of successful extensions: 3487
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2692
Number of HSP's gapped (non-prelim): 590
length of query: 922
length of database: 14,973,337
effective HSP length: 108
effective length of query: 814
effective length of database: 8,214,913
effective search space: 6686939182
effective search space used: 6686939182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)