Query 002431
Match_columns 922
No_of_seqs 1702 out of 4019
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 23:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3E-156 6E-161 1193.5 73.2 915 2-922 51-966 (966)
2 COG3914 Spy Predicted O-linked 100.0 6.2E-95 1.3E-99 747.2 49.9 553 328-901 55-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 7E-89 1.5E-93 717.4 26.3 360 537-897 1-468 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 6.4E-46 1.4E-50 382.0 37.8 437 32-468 47-484 (966)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-39 8.4E-44 400.9 62.6 461 4-466 436-897 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-38 7.6E-43 392.3 63.1 464 3-468 367-865 (899)
7 PRK15179 Vi polysaccharide bio 100.0 2E-37 4.2E-42 350.8 45.9 546 287-894 69-692 (694)
8 PRK11447 cellulose synthase su 100.0 3.6E-36 7.8E-41 372.8 61.2 467 2-468 31-699 (1157)
9 PRK11447 cellulose synthase su 100.0 4.4E-36 9.5E-41 372.1 61.4 466 3-468 116-739 (1157)
10 TIGR00990 3a0801s09 mitochondr 100.0 1.6E-34 3.4E-39 336.8 53.6 433 3-441 131-577 (615)
11 TIGR00990 3a0801s09 mitochondr 100.0 7.9E-34 1.7E-38 331.0 52.7 434 33-472 127-574 (615)
12 PRK09782 bacteriophage N4 rece 100.0 1.5E-31 3.2E-36 315.1 56.5 456 2-469 47-706 (987)
13 KOG2002 TPR-containing nuclear 100.0 6.1E-32 1.3E-36 294.8 46.9 462 15-477 252-799 (1018)
14 KOG2002 TPR-containing nuclear 100.0 5.5E-32 1.2E-36 295.2 45.6 467 2-468 167-708 (1018)
15 PRK10049 pgaA outer membrane p 100.0 6.7E-30 1.5E-34 302.8 50.0 422 19-443 2-464 (765)
16 PRK15174 Vi polysaccharide exp 100.0 1.3E-29 2.9E-34 293.6 48.1 364 66-442 41-410 (656)
17 PRK09782 bacteriophage N4 rece 100.0 8.8E-29 1.9E-33 291.7 52.3 457 2-469 81-740 (987)
18 PRK10049 pgaA outer membrane p 100.0 3.1E-29 6.7E-34 297.2 48.5 402 5-408 21-463 (765)
19 PRK15174 Vi polysaccharide exp 100.0 3.5E-29 7.5E-34 290.2 47.7 384 8-404 14-406 (656)
20 PLN03218 maturation of RBCL 1; 100.0 8.7E-28 1.9E-32 285.2 58.1 456 33-492 370-857 (1060)
21 PLN03218 maturation of RBCL 1; 100.0 1.1E-26 2.5E-31 275.8 61.4 478 4-493 375-893 (1060)
22 PLN03081 pentatricopeptide (PP 100.0 4.2E-28 9.2E-33 287.2 49.4 454 4-468 92-556 (697)
23 PLN03077 Protein ECB2; Provisi 100.0 5.1E-28 1.1E-32 293.7 46.9 477 7-506 94-613 (857)
24 KOG0547 Translocase of outer m 100.0 3.7E-28 8E-33 245.6 36.6 398 33-435 115-566 (606)
25 PLN03081 pentatricopeptide (PP 100.0 7.9E-27 1.7E-31 276.4 49.4 470 3-483 127-611 (697)
26 PLN03077 Protein ECB2; Provisi 100.0 1.5E-26 3.3E-31 280.9 51.7 452 3-468 226-719 (857)
27 KOG0547 Translocase of outer m 100.0 5.2E-27 1.1E-31 237.3 39.3 400 4-404 120-569 (606)
28 PRK14574 hmsH outer membrane p 100.0 1.3E-25 2.8E-30 259.6 53.2 441 2-443 37-521 (822)
29 KOG0495 HAT repeat protein [RN 100.0 8.1E-25 1.8E-29 228.3 49.9 451 10-468 387-879 (913)
30 KOG1155 Anaphase-promoting com 100.0 2E-25 4.3E-30 224.7 43.8 423 3-437 82-538 (559)
31 PRK14574 hmsH outer membrane p 100.0 1E-24 2.2E-29 252.3 53.4 442 27-469 28-513 (822)
32 KOG2003 TPR repeat-containing 100.0 2.7E-26 6E-31 229.0 34.8 453 2-455 204-709 (840)
33 KOG1173 Anaphase-promoting com 100.0 3.9E-25 8.4E-30 228.6 43.1 439 4-444 21-527 (611)
34 KOG2076 RNA polymerase III tra 100.0 1.5E-23 3.3E-28 228.4 49.7 462 2-463 142-889 (895)
35 KOG1173 Anaphase-promoting com 99.9 6.6E-24 1.4E-28 219.6 38.9 412 3-415 53-532 (611)
36 KOG1155 Anaphase-promoting com 99.9 2E-23 4.3E-28 210.4 40.7 417 36-464 81-531 (559)
37 KOG0548 Molecular co-chaperone 99.9 3.9E-24 8.3E-29 220.8 34.1 430 4-452 7-472 (539)
38 KOG1126 DNA-binding cell divis 99.9 3E-25 6.5E-30 234.8 26.6 305 137-441 319-626 (638)
39 KOG0495 HAT repeat protein [RN 99.9 1.4E-21 3E-26 204.5 48.7 439 3-446 410-891 (913)
40 PRK11788 tetratricopeptide rep 99.9 4E-23 8.7E-28 229.3 38.6 300 32-332 34-346 (389)
41 KOG2003 TPR repeat-containing 99.9 1.6E-23 3.4E-28 209.4 31.4 460 8-468 158-688 (840)
42 KOG1126 DNA-binding cell divis 99.9 3.2E-24 6.9E-29 227.1 27.1 305 103-407 319-626 (638)
43 KOG0548 Molecular co-chaperone 99.9 1.3E-22 2.7E-27 209.7 35.5 412 36-468 5-454 (539)
44 PRK11788 tetratricopeptide rep 99.9 1.3E-22 2.9E-27 225.1 38.9 299 67-366 35-346 (389)
45 PRK15490 Vi polysaccharide bio 99.9 2.1E-23 4.6E-28 224.5 28.3 327 539-895 206-575 (578)
46 KOG2076 RNA polymerase III tra 99.9 6.3E-21 1.4E-25 208.2 47.5 436 33-468 139-694 (895)
47 KOG1174 Anaphase-promoting com 99.9 3.6E-21 7.8E-26 191.0 38.5 438 4-446 48-511 (564)
48 KOG0624 dsRNA-activated protei 99.9 8.2E-22 1.8E-26 190.9 31.7 317 3-341 42-378 (504)
49 KOG4162 Predicted calmodulin-b 99.9 7.7E-21 1.7E-25 204.0 38.4 437 6-442 291-790 (799)
50 KOG0624 dsRNA-activated protei 99.9 6E-21 1.3E-25 185.0 33.4 340 32-412 37-381 (504)
51 KOG1156 N-terminal acetyltrans 99.9 3.7E-19 8.1E-24 187.4 44.0 470 2-474 10-516 (700)
52 TIGR03088 stp2 sugar transfera 99.9 5.6E-22 1.2E-26 218.8 22.2 341 536-896 1-373 (374)
53 PRK15427 colanic acid biosynth 99.9 4.6E-22 9.9E-27 218.7 19.4 173 712-895 221-405 (406)
54 KOG1915 Cell cycle control pro 99.9 3.5E-17 7.6E-22 165.6 51.9 443 5-451 79-551 (677)
55 KOG4162 Predicted calmodulin-b 99.9 6.4E-19 1.4E-23 189.4 39.3 405 65-469 321-783 (799)
56 KOG1127 TPR repeat-containing 99.9 6.1E-19 1.3E-23 193.2 38.4 462 13-476 472-1003(1238)
57 KOG1174 Anaphase-promoting com 99.9 1.5E-18 3.3E-23 172.6 36.3 405 3-412 101-511 (564)
58 cd03796 GT1_PIG-A_like This fa 99.9 4.4E-21 9.5E-26 212.5 20.6 329 538-898 1-370 (398)
59 cd03792 GT1_Trehalose_phosphor 99.9 8.9E-21 1.9E-25 208.5 22.3 338 538-895 1-371 (372)
60 PF13429 TPR_15: Tetratricopep 99.9 2.6E-21 5.7E-26 202.9 14.8 260 140-400 13-276 (280)
61 PLN02871 UDP-sulfoquinovose:DA 99.9 1.1E-20 2.4E-25 212.9 19.7 340 533-903 55-442 (465)
62 KOG1915 Cell cycle control pro 99.9 2.4E-16 5.2E-21 159.7 47.7 444 20-466 60-533 (677)
63 KOG1127 TPR repeat-containing 99.9 1.4E-18 3.1E-23 190.3 34.0 395 47-456 472-900 (1238)
64 KOG1129 TPR repeat-containing 99.8 9.3E-19 2E-23 168.8 27.0 410 35-448 6-471 (478)
65 TIGR00540 hemY_coli hemY prote 99.8 7E-18 1.5E-22 186.0 37.6 300 105-435 88-399 (409)
66 PLN02949 transferase, transfer 99.8 1E-19 2.2E-24 200.6 22.8 348 533-899 30-460 (463)
67 PF13429 TPR_15: Tetratricopep 99.8 7.8E-21 1.7E-25 199.3 12.9 261 173-435 12-277 (280)
68 cd03805 GT1_ALG2_like This fam 99.8 3.3E-20 7.2E-25 206.4 18.6 336 537-889 1-392 (392)
69 TIGR00540 hemY_coli hemY prote 99.8 1E-17 2.2E-22 184.8 37.4 299 37-366 88-398 (409)
70 cd03812 GT1_CapH_like This fam 99.8 1.4E-19 3.1E-24 198.9 21.8 318 538-874 1-346 (358)
71 KOG1156 N-terminal acetyltrans 99.8 9.2E-17 2E-21 169.6 41.2 426 33-461 7-460 (700)
72 PLN02846 digalactosyldiacylgly 99.8 1.7E-19 3.7E-24 194.8 19.5 325 535-895 3-391 (462)
73 KOG2376 Signal recognition par 99.8 2.8E-16 6.1E-21 164.2 42.3 442 3-453 16-505 (652)
74 TIGR03449 mycothiol_MshA UDP-N 99.8 1.6E-19 3.5E-24 201.4 19.6 326 548-897 19-403 (405)
75 PRK10747 putative protoheme IX 99.8 4E-17 8.6E-22 178.9 37.8 294 36-332 87-389 (398)
76 PRK12370 invasion protein regu 99.8 2.9E-18 6.3E-23 196.3 29.7 270 28-300 251-536 (553)
77 PRK10747 putative protoheme IX 99.8 4.2E-17 9.1E-22 178.8 37.4 293 3-300 88-391 (398)
78 cd03807 GT1_WbnK_like This fam 99.8 5.1E-19 1.1E-23 195.0 21.4 334 538-894 1-365 (365)
79 PRK12370 invasion protein regu 99.8 1.1E-17 2.4E-22 191.4 32.7 251 81-334 275-536 (553)
80 cd04962 GT1_like_5 This family 99.8 5.7E-19 1.2E-23 195.0 20.6 331 537-896 1-371 (371)
81 PRK09922 UDP-D-galactose:(gluc 99.8 3.3E-19 7.2E-24 194.5 18.4 323 537-898 1-358 (359)
82 KOG3785 Uncharacterized conser 99.8 2.6E-16 5.6E-21 153.6 36.1 443 7-468 30-489 (557)
83 cd04951 GT1_WbdM_like This fam 99.8 6.5E-19 1.4E-23 193.8 19.5 330 538-894 1-359 (360)
84 cd03822 GT1_ecORF704_like This 99.8 3.1E-18 6.7E-23 189.0 24.7 334 538-894 1-366 (366)
85 KOG1129 TPR repeat-containing 99.8 1.9E-18 4.2E-23 166.7 19.7 268 42-310 188-469 (478)
86 PRK15484 lipopolysaccharide 1, 99.8 3.8E-18 8.2E-23 186.8 23.2 181 703-896 183-378 (380)
87 TIGR02472 sucr_P_syn_N sucrose 99.8 4.1E-19 9E-24 198.4 14.8 177 706-893 241-438 (439)
88 PLN02939 transferase, transfer 99.8 3E-18 6.6E-23 194.6 21.5 189 702-899 765-970 (977)
89 cd05844 GT1_like_7 Glycosyltra 99.8 1.2E-18 2.7E-23 192.1 18.1 166 715-891 190-366 (367)
90 cd03818 GT1_ExpC_like This fam 99.8 4.3E-18 9.3E-23 188.7 22.3 179 703-890 201-395 (396)
91 PLN02316 synthase/transferase 99.8 3.7E-18 7.9E-23 198.1 21.6 338 534-897 585-1035(1036)
92 cd03820 GT1_amsD_like This fam 99.8 2.6E-18 5.6E-23 187.9 18.7 319 538-890 1-347 (348)
93 PRK10307 putative glycosyl tra 99.8 3.6E-18 7.8E-23 190.5 19.4 185 702-898 218-410 (412)
94 cd03821 GT1_Bme6_like This fam 99.8 5.3E-18 1.2E-22 187.6 20.6 331 538-890 1-374 (375)
95 COG3063 PilF Tfp pilus assembl 99.8 7E-17 1.5E-21 149.8 24.0 205 33-237 35-241 (250)
96 COG2956 Predicted N-acetylgluc 99.8 1.1E-15 2.3E-20 148.2 32.7 292 37-331 39-345 (389)
97 PRK00654 glgA glycogen synthas 99.8 5.5E-18 1.2E-22 190.6 19.7 184 703-898 271-465 (466)
98 KOG1125 TPR repeat-containing 99.8 1.5E-17 3.3E-22 173.8 21.3 229 4-232 290-527 (579)
99 PRK11189 lipoprotein NlpI; Pro 99.8 1.4E-16 3.1E-21 167.0 28.9 231 47-282 40-283 (296)
100 PRK11189 lipoprotein NlpI; Pro 99.8 7.8E-17 1.7E-21 168.9 26.8 229 217-450 40-281 (296)
101 TIGR02149 glgA_Coryne glycogen 99.8 7.5E-18 1.6E-22 187.2 20.2 183 703-897 191-388 (388)
102 cd03801 GT1_YqgM_like This fam 99.8 1.7E-18 3.7E-23 191.2 14.6 338 538-894 1-374 (374)
103 cd03825 GT1_wcfI_like This fam 99.8 6.4E-18 1.4E-22 186.4 19.0 309 537-896 1-365 (365)
104 COG3063 PilF Tfp pilus assembl 99.8 1.5E-16 3.2E-21 147.6 24.6 207 236-442 35-243 (250)
105 KOG3785 Uncharacterized conser 99.8 3.4E-15 7.4E-20 145.9 34.1 423 2-439 60-494 (557)
106 cd03806 GT1_ALG11_like This fa 99.8 5.3E-18 1.2E-22 187.4 16.9 331 538-887 2-418 (419)
107 cd03819 GT1_WavL_like This fam 99.8 8.1E-18 1.8E-22 184.7 17.2 314 545-884 6-354 (355)
108 KOG0550 Molecular chaperone (D 99.8 1.6E-16 3.5E-21 158.8 24.5 264 39-302 55-353 (486)
109 COG2956 Predicted N-acetylgluc 99.8 2.6E-15 5.6E-20 145.7 31.6 291 5-297 41-345 (389)
110 cd04955 GT1_like_6 This family 99.8 1.6E-17 3.5E-22 183.0 19.0 332 538-894 1-363 (363)
111 cd03799 GT1_amsK_like This is 99.8 5.9E-18 1.3E-22 185.8 15.4 325 538-889 1-355 (355)
112 cd03816 GT1_ALG1_like This fam 99.8 1.8E-17 3.9E-22 183.6 19.3 155 711-874 230-399 (415)
113 cd03809 GT1_mtfB_like This fam 99.8 5.5E-18 1.2E-22 186.9 15.3 329 538-890 1-364 (365)
114 cd03802 GT1_AviGT4_like This f 99.8 4.2E-17 9E-22 177.4 21.9 310 537-894 1-335 (335)
115 TIGR02521 type_IV_pilW type IV 99.8 3.3E-16 7.2E-21 160.4 27.1 202 236-437 31-234 (234)
116 cd03817 GT1_UGDG_like This fam 99.8 8.6E-18 1.9E-22 185.9 15.5 336 538-895 1-373 (374)
117 TIGR02521 type_IV_pilW type IV 99.8 6.2E-16 1.3E-20 158.4 28.0 200 33-232 31-232 (234)
118 cd03800 GT1_Sucrose_synthase T 99.8 3.7E-17 7.9E-22 182.6 20.4 177 704-890 211-397 (398)
119 PLN02501 digalactosyldiacylgly 99.7 1.8E-17 3.9E-22 180.4 16.6 258 601-893 423-707 (794)
120 KOG1125 TPR repeat-containing 99.7 1E-16 2.2E-21 167.8 21.5 264 139-428 289-564 (579)
121 KOG1840 Kinesin light chain [C 99.7 3.5E-15 7.5E-20 161.6 31.7 235 200-434 196-478 (508)
122 KOG0550 Molecular chaperone (D 99.7 1.6E-16 3.5E-21 158.9 19.1 294 104-438 52-353 (486)
123 TIGR02468 sucrsPsyn_pln sucros 99.7 5.1E-17 1.1E-21 188.0 17.2 182 707-900 473-675 (1050)
124 TIGR03087 stp1 sugar transfera 99.7 8.1E-17 1.8E-21 178.4 18.4 166 711-894 222-395 (397)
125 cd03811 GT1_WabH_like This fam 99.7 7.7E-17 1.7E-21 176.5 18.0 316 538-874 1-347 (353)
126 KOG1840 Kinesin light chain [C 99.7 6.8E-15 1.5E-19 159.3 31.9 237 165-401 195-479 (508)
127 TIGR02470 sucr_synth sucrose s 99.7 9.5E-17 2.1E-21 182.2 18.3 178 705-894 540-746 (784)
128 PRK14099 glycogen synthase; Pr 99.7 1.1E-16 2.5E-21 178.7 17.4 183 703-898 283-481 (485)
129 PRK10125 putative glycosyl tra 99.7 1.4E-16 3.1E-21 174.3 17.4 314 537-896 1-405 (405)
130 cd03795 GT1_like_4 This family 99.7 3.5E-16 7.6E-21 171.9 20.2 324 538-886 1-357 (357)
131 PLN02789 farnesyltranstransfer 99.7 3E-15 6.5E-20 155.8 25.6 202 217-418 51-267 (320)
132 PLN02789 farnesyltranstransfer 99.7 6.5E-15 1.4E-19 153.3 28.0 207 42-248 46-267 (320)
133 cd03814 GT1_like_2 This family 99.7 3.7E-16 8E-21 172.2 19.6 331 538-894 1-364 (364)
134 cd03798 GT1_wlbH_like This fam 99.7 2.2E-16 4.8E-21 174.6 17.7 335 539-895 1-376 (377)
135 cd03808 GT1_cap1E_like This fa 99.7 6.3E-16 1.4E-20 169.8 21.0 323 538-890 1-358 (359)
136 KOG2376 Signal recognition par 99.7 3.7E-13 7.9E-18 141.2 39.7 426 34-468 13-486 (652)
137 cd03813 GT1_like_3 This family 99.7 4E-17 8.7E-22 184.1 11.3 178 710-894 290-475 (475)
138 cd03823 GT1_ExpE7_like This fa 99.7 4.7E-16 1E-20 171.0 18.7 320 538-894 1-358 (359)
139 PRK14098 glycogen synthase; Pr 99.7 3.7E-16 8E-21 174.9 17.7 182 703-897 295-487 (489)
140 KOG1111 N-acetylglucosaminyltr 99.7 6.3E-16 1.4E-20 152.1 15.7 163 714-898 196-369 (426)
141 TIGR02095 glgA glycogen/starch 99.7 8E-16 1.7E-20 174.2 18.8 182 703-895 279-472 (473)
142 cd05804 StaR_like StaR_like; a 99.7 1.8E-13 3.9E-18 149.9 35.4 269 29-298 2-292 (355)
143 TIGR02918 accessory Sec system 99.7 1.3E-15 2.9E-20 169.8 17.7 167 714-896 320-500 (500)
144 KOG4340 Uncharacterized conser 99.7 1.3E-13 2.7E-18 132.1 27.3 417 7-442 18-450 (459)
145 PRK05749 3-deoxy-D-manno-octul 99.7 1.3E-15 2.9E-20 170.3 16.1 330 553-897 64-421 (425)
146 cd05804 StaR_like StaR_like; a 99.6 3.9E-13 8.4E-18 147.2 34.7 204 63-267 2-217 (355)
147 cd04946 GT1_AmsK_like This fam 99.6 1.6E-15 3.5E-20 167.6 15.6 169 711-889 228-405 (407)
148 PF12569 NARP1: NMDA receptor- 99.6 3E-12 6.4E-17 141.1 40.5 296 2-300 7-335 (517)
149 KOG2047 mRNA splicing factor [ 99.6 6.5E-11 1.4E-15 125.3 48.0 446 5-455 108-709 (835)
150 PLN00142 sucrose synthase 99.6 2.6E-15 5.7E-20 170.4 15.6 179 705-893 563-768 (815)
151 KOG2047 mRNA splicing factor [ 99.6 8.2E-11 1.8E-15 124.6 47.0 411 19-434 88-614 (835)
152 cd03791 GT1_Glycogen_synthase_ 99.6 3.4E-15 7.3E-20 170.1 16.0 175 703-894 284-475 (476)
153 cd03794 GT1_wbuB_like This fam 99.6 6.9E-15 1.5E-19 163.8 17.5 173 705-889 212-393 (394)
154 cd04949 GT1_gtfA_like This fam 99.6 5E-15 1.1E-19 163.3 15.9 161 714-888 205-371 (372)
155 PF12569 NARP1: NMDA receptor- 99.6 4.9E-12 1.1E-16 139.4 36.1 131 237-367 195-334 (517)
156 PF00534 Glycos_transf_1: Glyc 99.6 8.5E-15 1.9E-19 141.6 11.6 161 704-873 6-172 (172)
157 COG3071 HemY Uncharacterized e 99.6 2.3E-11 5E-16 122.6 36.1 287 42-365 93-388 (400)
158 cd03804 GT1_wbaZ_like This fam 99.6 3.7E-14 8.1E-19 155.0 17.6 150 714-889 198-350 (351)
159 COG3071 HemY Uncharacterized e 99.6 2.3E-11 5.1E-16 122.6 34.9 292 3-298 88-389 (400)
160 PRK13609 diacylglycerol glucos 99.6 1E-13 2.2E-18 152.8 19.0 176 703-895 192-371 (380)
161 PHA01633 putative glycosyl tra 99.6 5.3E-14 1.2E-18 146.5 15.4 171 703-890 137-334 (335)
162 PLN02275 transferase, transfer 99.5 1.5E-13 3.2E-18 150.3 19.0 133 714-856 214-370 (371)
163 PLN02605 monogalactosyldiacylg 99.5 1.8E-13 3.9E-18 150.2 19.7 176 702-892 195-378 (382)
164 PRK00726 murG undecaprenyldiph 99.5 2.2E-13 4.8E-18 148.9 19.3 319 537-894 2-356 (357)
165 TIGR03302 OM_YfiO outer membra 99.5 7.7E-13 1.7E-17 135.1 21.9 186 236-438 33-235 (235)
166 TIGR03302 OM_YfiO outer membra 99.5 1.5E-12 3.3E-17 132.9 23.0 188 30-234 30-234 (235)
167 KOG3060 Uncharacterized conser 99.5 5.4E-12 1.2E-16 119.0 23.2 187 265-451 47-236 (289)
168 PHA01630 putative group 1 glyc 99.5 2.3E-13 4.9E-18 144.2 15.1 163 713-895 142-330 (331)
169 cd03785 GT1_MurG MurG is an N- 99.5 5.8E-13 1.3E-17 145.6 18.8 302 538-874 1-339 (350)
170 PRK14720 transcript cleavage f 99.5 4E-12 8.7E-17 145.8 25.3 222 28-281 26-268 (906)
171 PRK15359 type III secretion sy 99.5 6E-13 1.3E-17 122.6 15.1 124 324-450 13-136 (144)
172 TIGR00236 wecB UDP-N-acetylglu 99.5 1E-12 2.2E-17 143.9 19.4 320 537-891 1-363 (365)
173 PRK14720 transcript cleavage f 99.5 9.1E-12 2E-16 142.9 27.5 243 164-451 26-268 (906)
174 PRK13608 diacylglycerol glucos 99.5 2E-12 4.4E-17 142.0 20.5 179 703-898 192-374 (391)
175 PRK04841 transcriptional regul 99.5 3.8E-10 8.2E-15 139.8 42.2 372 68-440 342-765 (903)
176 PRK15359 type III secretion sy 99.5 1.8E-12 3.8E-17 119.5 15.8 124 20-146 14-137 (144)
177 KOG4340 Uncharacterized conser 99.5 1.2E-10 2.7E-15 111.9 28.4 308 43-363 20-335 (459)
178 TIGR01133 murG undecaprenyldip 99.4 1.4E-12 2.9E-17 142.5 16.6 304 538-874 2-336 (348)
179 PRK10370 formate-dependent nit 99.4 4.8E-12 1E-16 123.2 18.3 124 317-440 52-178 (198)
180 COG5010 TadD Flp pilus assembl 99.4 1.2E-11 2.5E-16 118.4 20.0 172 289-461 52-223 (257)
181 PRK04841 transcriptional regul 99.4 5.4E-10 1.2E-14 138.5 40.5 370 34-404 342-763 (903)
182 KOG3060 Uncharacterized conser 99.4 5.3E-11 1.1E-15 112.4 23.1 182 236-417 52-236 (289)
183 COG5010 TadD Flp pilus assembl 99.4 2.9E-11 6.3E-16 115.7 21.6 178 51-229 51-228 (257)
184 PRK10370 formate-dependent nit 99.4 3.1E-11 6.7E-16 117.6 20.5 123 80-202 52-177 (198)
185 PF04733 Coatomer_E: Coatomer 99.4 7.5E-12 1.6E-16 128.9 17.0 256 179-442 11-272 (290)
186 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 1.6E-12 3.5E-17 142.8 12.8 303 538-867 1-345 (363)
187 KOG1128 Uncharacterized conser 99.4 1.3E-11 2.9E-16 133.0 19.0 219 236-469 398-616 (777)
188 KOG1130 Predicted G-alpha GTPa 99.4 7.4E-12 1.6E-16 125.3 15.6 270 37-333 21-344 (639)
189 KOG1128 Uncharacterized conser 99.4 1E-10 2.2E-15 126.3 25.1 221 133-367 396-616 (777)
190 KOG1130 Predicted G-alpha GTPa 99.4 8.6E-12 1.9E-16 124.8 15.6 96 340-435 237-344 (639)
191 cd03788 GT1_TPS Trehalose-6-Ph 99.3 5.1E-12 1.1E-16 140.9 13.2 171 707-891 258-457 (460)
192 TIGR02400 trehalose_OtsA alpha 99.3 2E-11 4.3E-16 134.7 16.9 175 703-893 252-454 (456)
193 PRK15179 Vi polysaccharide bio 99.3 1.8E-10 3.8E-15 132.1 25.0 154 256-409 72-225 (694)
194 KOG2053 Mitochondrial inherita 99.3 2.8E-07 6E-12 102.6 47.4 288 7-295 17-333 (932)
195 PF04733 Coatomer_E: Coatomer 99.3 5.2E-11 1.1E-15 122.7 16.9 254 145-407 11-271 (290)
196 TIGR02552 LcrH_SycD type III s 99.3 4.3E-11 9.3E-16 110.3 14.2 118 325-442 4-121 (135)
197 KOG0553 TPR repeat-containing 99.3 2.7E-11 5.9E-16 118.1 12.5 108 341-448 84-191 (304)
198 TIGR02552 LcrH_SycD type III s 99.3 1.3E-10 2.8E-15 107.0 15.8 116 21-136 5-120 (135)
199 KOG0853 Glycosyltransferase [C 99.2 9.5E-11 2.1E-15 124.8 13.4 186 701-895 261-467 (495)
200 KOG0553 TPR repeat-containing 99.2 1.3E-10 2.7E-15 113.5 13.1 120 33-152 81-200 (304)
201 PRK15363 pathogenicity island 99.2 1.9E-10 4.2E-15 103.0 13.0 102 335-436 32-133 (157)
202 cd03793 GT1_Glycogen_synthase_ 99.2 6.1E-11 1.3E-15 129.0 11.7 124 772-899 450-590 (590)
203 KOG1914 mRNA cleavage and poly 99.2 9.7E-07 2.1E-11 92.7 41.5 426 23-471 10-503 (656)
204 cd01635 Glycosyltransferase_GT 99.2 5.2E-10 1.1E-14 113.9 17.7 106 715-823 109-216 (229)
205 PRK00025 lpxB lipid-A-disaccha 99.2 1.1E-10 2.4E-15 128.9 13.5 160 702-873 175-355 (380)
206 KOG1387 Glycosyltransferase [C 99.2 1.9E-10 4E-15 113.0 13.1 273 605-898 143-461 (465)
207 COG4783 Putative Zn-dependent 99.2 7.2E-09 1.6E-13 107.9 24.1 153 64-233 303-455 (484)
208 PLN03063 alpha,alpha-trehalose 99.2 2.4E-10 5.2E-15 134.3 14.9 177 712-901 278-483 (797)
209 KOG1914 mRNA cleavage and poly 99.2 5.6E-06 1.2E-10 87.2 44.7 403 9-437 29-503 (656)
210 PF13692 Glyco_trans_1_4: Glyc 99.2 4.2E-11 9.1E-16 110.4 6.8 129 713-859 2-135 (135)
211 KOG2053 Mitochondrial inherita 99.2 3E-06 6.5E-11 94.6 45.0 432 43-475 19-542 (932)
212 COG4783 Putative Zn-dependent 99.2 8.8E-09 1.9E-13 107.3 23.9 153 267-436 303-455 (484)
213 PRK14501 putative bifunctional 99.1 3.3E-10 7.1E-15 134.0 14.7 177 711-901 263-468 (726)
214 TIGR00215 lpxB lipid-A-disacch 99.1 4E-10 8.6E-15 123.0 14.0 257 602-874 79-366 (385)
215 PRK15363 pathogenicity island 99.1 2.1E-09 4.5E-14 96.4 15.1 102 30-131 32-133 (157)
216 KOG3617 WD40 and TPR repeat-co 99.1 2.5E-06 5.4E-11 93.5 37.5 47 421-468 1306-1358(1416)
217 KOG2300 Uncharacterized conser 99.1 2.1E-05 4.5E-10 81.8 42.2 404 35-438 9-517 (629)
218 PLN03088 SGT1, suppressor of 99.1 3.3E-09 7.1E-14 113.9 15.8 107 4-110 7-113 (356)
219 KOG1070 rRNA processing protei 99.0 8.6E-08 1.9E-12 110.7 27.1 218 151-368 1440-1664(1710)
220 PRK10866 outer membrane biogen 99.0 5.5E-08 1.2E-12 97.9 22.3 182 31-229 30-238 (243)
221 cd04950 GT1_like_1 Glycosyltra 99.0 2.2E-09 4.9E-14 117.6 12.0 160 712-895 204-371 (373)
222 PF13525 YfiO: Outer membrane 99.0 4.9E-08 1.1E-12 96.1 20.0 170 2-188 8-197 (203)
223 KOG3617 WD40 and TPR repeat-co 99.0 2.9E-06 6.3E-11 93.0 34.7 223 11-262 740-993 (1416)
224 PLN03088 SGT1, suppressor of 99.0 1.1E-08 2.4E-13 109.9 16.4 111 36-146 5-115 (356)
225 KOG1941 Acetylcholine receptor 99.0 1.1E-07 2.4E-12 94.5 21.4 297 178-474 15-365 (518)
226 KOG3081 Vesicle coat complex C 98.9 5.4E-07 1.2E-11 86.5 24.2 254 179-442 18-278 (299)
227 COG0438 RfaG Glycosyltransfera 98.9 2.4E-08 5.1E-13 109.6 18.0 176 714-898 200-379 (381)
228 PRK10866 outer membrane biogen 98.9 1.7E-07 3.6E-12 94.5 22.1 178 65-259 30-235 (243)
229 KOG1070 rRNA processing protei 98.9 5.9E-07 1.3E-11 104.0 28.1 212 20-232 1445-1663(1710)
230 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.8E-08 6.1E-13 89.1 14.2 105 339-443 3-113 (119)
231 COG4235 Cytochrome c biogenesi 98.9 3.7E-08 8E-13 97.5 15.3 122 320-441 138-262 (287)
232 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.4E-08 7.4E-13 88.6 13.9 99 3-101 6-110 (119)
233 PF13525 YfiO: Outer membrane 98.9 2E-07 4.4E-12 91.7 20.0 176 32-224 4-199 (203)
234 PF09976 TPR_21: Tetratricopep 98.9 8.6E-08 1.9E-12 88.9 16.1 116 45-161 23-144 (145)
235 COG4235 Cytochrome c biogenesi 98.9 6.6E-08 1.4E-12 95.7 16.0 121 49-169 138-261 (287)
236 TIGR03713 acc_sec_asp1 accesso 98.9 1.5E-08 3.4E-13 113.2 13.1 164 714-891 322-517 (519)
237 TIGR02398 gluc_glyc_Psyn gluco 98.9 3.5E-08 7.5E-13 108.2 15.2 174 703-893 278-480 (487)
238 KOG3081 Vesicle coat complex C 98.9 2.4E-06 5.1E-11 82.2 25.4 46 41-87 16-61 (299)
239 COG3898 Uncharacterized membra 98.9 3.2E-06 7E-11 85.3 27.3 289 5-299 90-392 (531)
240 KOG2300 Uncharacterized conser 98.9 0.00024 5.1E-09 74.2 41.6 427 2-431 10-552 (629)
241 COG3898 Uncharacterized membra 98.8 1.7E-05 3.7E-10 80.2 32.0 291 37-334 88-393 (531)
242 KOG2471 TPR repeat-containing 98.8 3E-06 6.4E-11 87.8 27.3 456 4-461 22-676 (696)
243 PF13414 TPR_11: TPR repeat; P 98.8 1.4E-08 3.1E-13 80.5 8.6 67 371-437 2-69 (69)
244 KOG1941 Acetylcholine receptor 98.8 9.5E-07 2.1E-11 88.0 22.7 303 3-333 10-360 (518)
245 cd00189 TPR Tetratricopeptide 98.8 4E-08 8.6E-13 84.0 11.6 99 340-438 2-100 (100)
246 PRK02603 photosystem I assembl 98.8 1.3E-07 2.8E-12 90.7 16.0 94 32-125 34-130 (172)
247 PF12895 Apc3: Anaphase-promot 98.8 1.4E-08 3E-13 84.1 7.7 81 12-93 2-84 (84)
248 KOG3616 Selective LIM binding 98.8 4.7E-05 1E-09 82.7 35.7 408 9-462 454-930 (1636)
249 COG0457 NrfG FOG: TPR repeat [ 98.8 8.4E-06 1.8E-10 83.6 30.4 222 217-438 37-268 (291)
250 KOG0543 FKBP-type peptidyl-pro 98.8 6.6E-08 1.4E-12 99.0 13.6 98 340-437 259-357 (397)
251 COG0457 NrfG FOG: TPR repeat [ 98.8 2.3E-05 5E-10 80.2 33.6 223 46-268 36-268 (291)
252 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3.1E-12 90.2 15.2 108 8-115 8-120 (168)
253 PRK02603 photosystem I assembl 98.8 2E-07 4.4E-12 89.4 16.1 118 65-202 33-153 (172)
254 COG4785 NlpI Lipoprotein NlpI, 98.8 5.9E-07 1.3E-11 83.1 17.6 101 69-169 67-167 (297)
255 cd00189 TPR Tetratricopeptide 98.8 7E-08 1.5E-12 82.4 11.4 95 3-97 4-98 (100)
256 PF14938 SNAP: Soluble NSF att 98.8 1.4E-06 3E-11 90.9 22.9 177 48-267 30-227 (282)
257 PF09976 TPR_21: Tetratricopep 98.8 3.8E-07 8.3E-12 84.6 16.7 122 5-127 17-144 (145)
258 COG4785 NlpI Lipoprotein NlpI, 98.8 4E-07 8.6E-12 84.2 15.8 195 101-300 65-267 (297)
259 PF13414 TPR_11: TPR repeat; P 98.8 3.8E-08 8.3E-13 78.0 8.3 66 33-98 3-69 (69)
260 CHL00033 ycf3 photosystem I as 98.8 2E-07 4.4E-12 89.1 14.9 101 340-440 37-154 (168)
261 PF13432 TPR_16: Tetratricopep 98.8 3.4E-08 7.4E-13 77.1 7.7 63 4-66 2-64 (65)
262 PRK11906 transcriptional regul 98.7 7.8E-07 1.7E-11 93.8 19.9 119 50-168 275-405 (458)
263 KOG0543 FKBP-type peptidyl-pro 98.7 1.9E-07 4.1E-12 95.8 14.5 125 5-129 214-354 (397)
264 PF14938 SNAP: Soluble NSF att 98.7 6.2E-07 1.3E-11 93.5 18.9 128 308-435 118-266 (282)
265 PF13432 TPR_16: Tetratricopep 98.7 5.1E-08 1.1E-12 76.2 8.0 64 377-440 2-65 (65)
266 PF12895 Apc3: Anaphase-promot 98.7 3.5E-08 7.6E-13 81.6 7.4 81 351-432 2-84 (84)
267 PRK10153 DNA-binding transcrip 98.7 7.3E-07 1.6E-11 99.7 20.0 121 83-204 358-488 (517)
268 PRK10153 DNA-binding transcrip 98.7 4.6E-07 1E-11 101.3 17.9 121 320-441 358-488 (517)
269 PRK11906 transcriptional regul 98.7 8.1E-07 1.8E-11 93.7 18.3 149 14-162 273-434 (458)
270 PRK10803 tol-pal system protei 98.7 3.9E-07 8.4E-12 92.3 15.2 107 32-138 141-254 (263)
271 PRK15331 chaperone protein Sic 98.7 2.6E-07 5.6E-12 83.4 11.8 105 335-440 34-138 (165)
272 PRK10803 tol-pal system protei 98.7 4.3E-07 9.3E-12 92.0 14.6 104 339-442 143-253 (263)
273 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.1E-07 1.3E-11 95.6 16.1 117 42-161 178-294 (395)
274 KOG1258 mRNA processing protei 98.6 0.0015 3.2E-08 71.1 42.5 397 50-455 62-490 (577)
275 COG1729 Uncharacterized protei 98.6 6.5E-07 1.4E-11 87.7 14.4 99 3-101 145-249 (262)
276 PRK15331 chaperone protein Sic 98.6 1.2E-06 2.5E-11 79.3 13.8 104 263-366 30-133 (165)
277 COG5107 RNA14 Pre-mRNA 3'-end 98.6 0.0011 2.3E-08 68.9 36.0 87 21-108 30-116 (660)
278 KOG4648 Uncharacterized conser 98.6 5.5E-08 1.2E-12 95.8 5.0 226 36-270 100-335 (536)
279 KOG4648 Uncharacterized conser 98.6 6.7E-08 1.5E-12 95.2 5.4 226 207-441 101-336 (536)
280 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.1E-06 4.6E-11 91.5 16.8 122 73-197 175-296 (395)
281 PF07079 DUF1347: Protein of u 98.5 0.0019 4.2E-08 67.3 42.2 424 3-432 10-521 (549)
282 COG4105 ComL DNA uptake lipopr 98.5 2.5E-05 5.5E-10 75.9 21.9 183 3-202 38-237 (254)
283 COG0297 GlgA Glycogen synthase 98.5 1.9E-06 4E-11 94.3 15.9 171 703-898 282-480 (487)
284 KOG4234 TPR repeat-containing 98.5 1.1E-06 2.4E-11 80.2 11.5 106 343-448 100-210 (271)
285 PLN03064 alpha,alpha-trehalose 98.5 3.3E-06 7.2E-11 99.1 18.6 179 703-899 356-565 (934)
286 PF13512 TPR_18: Tetratricopep 98.5 2.5E-06 5.4E-11 75.4 13.0 81 2-82 13-99 (142)
287 PF14559 TPR_19: Tetratricopep 98.5 3.9E-07 8.6E-12 71.9 7.3 66 10-75 2-67 (68)
288 COG4105 ComL DNA uptake lipopr 98.5 4.4E-05 9.6E-10 74.3 21.9 175 67-258 34-226 (254)
289 KOG2796 Uncharacterized conser 98.5 0.00011 2.5E-09 70.4 24.0 186 208-405 127-319 (366)
290 KOG0985 Vesicle coat protein c 98.5 0.00088 1.9E-08 76.0 34.5 330 20-384 968-1325(1666)
291 KOG3616 Selective LIM binding 98.5 0.00044 9.5E-09 75.4 31.3 135 108-259 713-847 (1636)
292 COG1729 Uncharacterized protei 98.5 2.9E-06 6.3E-11 83.2 13.7 104 341-444 144-253 (262)
293 KOG0985 Vesicle coat protein c 98.5 0.0013 2.7E-08 74.8 35.2 327 65-430 982-1336(1666)
294 TIGR03492 conserved hypothetic 98.4 5.5E-06 1.2E-10 90.6 16.9 173 708-891 200-394 (396)
295 COG1819 Glycosyl transferases, 98.4 9.3E-05 2E-09 80.9 26.0 162 712-895 237-401 (406)
296 COG4700 Uncharacterized protei 98.4 3.3E-05 7.2E-10 70.0 18.2 124 307-431 92-218 (251)
297 PF10345 Cohesin_load: Cohesin 98.4 0.0093 2E-07 69.7 44.1 178 16-194 38-250 (608)
298 PF12688 TPR_5: Tetratrico pep 98.4 7E-06 1.5E-10 71.7 13.8 94 35-128 3-102 (120)
299 PF14559 TPR_19: Tetratricopep 98.4 9.6E-07 2.1E-11 69.7 7.3 63 350-412 3-65 (68)
300 KOG4555 TPR repeat-containing 98.4 3.7E-06 7.9E-11 71.1 10.7 108 343-450 48-159 (175)
301 KOG2471 TPR repeat-containing 98.4 5.2E-05 1.1E-09 78.9 21.2 356 5-365 212-682 (696)
302 cd03784 GT1_Gtf_like This fami 98.4 8.4E-05 1.8E-09 82.8 25.3 142 712-872 239-384 (401)
303 COG1519 KdtA 3-deoxy-D-manno-o 98.4 1.4E-05 3E-10 83.4 17.2 305 553-874 63-401 (419)
304 COG4700 Uncharacterized protei 98.4 4.9E-05 1.1E-09 69.0 18.3 115 219-333 72-189 (251)
305 PF12688 TPR_5: Tetratrico pep 98.4 9.8E-06 2.1E-10 70.8 13.4 94 340-433 3-102 (120)
306 TIGR02919 accessory Sec system 98.4 6.1E-06 1.3E-10 90.2 14.9 132 727-872 291-424 (438)
307 KOG4234 TPR repeat-containing 98.4 4.2E-06 9.1E-11 76.6 11.2 103 311-413 102-209 (271)
308 KOG1258 mRNA processing protei 98.3 0.0083 1.8E-07 65.5 43.9 394 16-420 62-489 (577)
309 PF13524 Glyco_trans_1_2: Glyc 98.3 9.6E-07 2.1E-11 74.6 6.2 90 792-890 1-91 (92)
310 PF13371 TPR_9: Tetratricopept 98.3 2.7E-06 5.8E-11 68.3 8.5 62 347-408 4-65 (73)
311 PF13371 TPR_9: Tetratricopept 98.3 3.8E-06 8.2E-11 67.4 8.7 66 6-71 2-67 (73)
312 PF13512 TPR_18: Tetratricopep 98.3 1.9E-05 4.1E-10 70.0 13.3 85 32-116 9-99 (142)
313 KOG4507 Uncharacterized conser 98.3 0.00015 3.3E-09 77.1 21.8 108 342-449 611-719 (886)
314 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 2.1E-05 4.6E-10 85.2 16.2 297 538-862 2-341 (365)
315 COG0707 MurG UDP-N-acetylgluco 98.3 8.9E-05 1.9E-09 78.8 20.3 137 724-874 197-339 (357)
316 PRK09814 beta-1,6-galactofuran 98.2 8.1E-06 1.8E-10 87.8 12.1 132 714-874 170-313 (333)
317 KOG2796 Uncharacterized conser 98.2 0.0014 3E-08 63.3 24.4 184 176-371 129-319 (366)
318 TIGR01426 MGT glycosyltransfer 98.2 6.4E-05 1.4E-09 83.3 18.2 163 712-893 225-390 (392)
319 KOG4555 TPR repeat-containing 98.1 5.9E-05 1.3E-09 64.0 12.6 97 308-404 47-147 (175)
320 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 9.5E-06 2.1E-10 85.6 9.9 69 367-435 70-141 (453)
321 TIGR03590 PseG pseudaminic aci 98.1 9.7E-05 2.1E-09 76.8 17.4 234 558-819 23-267 (279)
322 KOG2396 HAT (Half-A-TPR) repea 98.1 0.02 4.4E-07 60.9 41.0 426 18-471 90-561 (568)
323 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.018 3.8E-07 60.2 39.7 427 2-438 45-534 (660)
324 KOG1585 Protein required for f 98.0 0.0012 2.5E-08 63.1 20.2 195 237-461 32-248 (308)
325 PF13528 Glyco_trans_1_3: Glyc 98.0 0.00021 4.5E-09 76.7 18.1 106 712-839 192-298 (318)
326 COG0763 LpxB Lipid A disacchar 98.0 0.00027 5.9E-09 73.1 17.5 163 699-871 174-356 (381)
327 PRK12446 undecaprenyldiphospho 98.0 0.00012 2.6E-09 78.9 15.9 145 703-864 175-330 (352)
328 PF04007 DUF354: Protein of un 98.0 0.00039 8.4E-09 73.0 19.0 276 545-855 6-306 (335)
329 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 9.1E-05 2E-09 78.4 14.0 68 63-130 71-141 (453)
330 PF06552 TOM20_plant: Plant sp 98.0 4.1E-05 8.8E-10 70.0 9.9 92 355-446 8-120 (186)
331 PF13424 TPR_12: Tetratricopep 98.0 8.1E-06 1.8E-10 66.4 4.9 64 372-435 5-75 (78)
332 PF10345 Cohesin_load: Cohesin 98.0 0.072 1.6E-06 62.3 39.9 422 2-434 62-605 (608)
333 PF04184 ST7: ST7 protein; In 98.0 0.0011 2.5E-08 70.2 21.1 121 5-127 174-321 (539)
334 KOG1586 Protein required for f 98.0 0.00097 2.1E-08 63.2 18.2 188 214-443 25-232 (288)
335 PF02684 LpxB: Lipid-A-disacch 97.9 0.00031 6.7E-09 74.8 16.8 157 703-870 175-351 (373)
336 KOG2610 Uncharacterized conser 97.9 0.00086 1.9E-08 66.8 18.4 157 277-433 110-274 (491)
337 KOG1586 Protein required for f 97.9 0.0041 9E-08 59.1 22.0 123 113-235 85-227 (288)
338 PF05843 Suf: Suppressor of fo 97.9 0.00022 4.7E-09 74.1 15.3 136 306-441 3-142 (280)
339 KOG0890 Protein kinase of the 97.9 0.099 2.2E-06 66.2 39.5 149 4-157 1388-1540(2382)
340 KOG1585 Protein required for f 97.9 0.001 2.2E-08 63.5 17.7 166 271-465 32-215 (308)
341 KOG2610 Uncharacterized conser 97.9 0.0072 1.6E-07 60.5 23.9 156 108-263 110-274 (491)
342 PRK01021 lpxB lipid-A-disaccha 97.9 0.00039 8.5E-09 77.3 17.1 158 702-874 402-586 (608)
343 KOG4507 Uncharacterized conser 97.9 0.0017 3.6E-08 69.6 20.7 108 310-417 612-721 (886)
344 PF06552 TOM20_plant: Plant sp 97.9 0.00012 2.7E-09 66.9 10.6 87 15-101 7-114 (186)
345 PF13424 TPR_12: Tetratricopep 97.9 1.3E-05 2.9E-10 65.1 3.9 64 338-401 5-75 (78)
346 PHA03392 egt ecdysteroid UDP-g 97.9 0.00058 1.2E-08 77.1 18.0 180 713-917 297-482 (507)
347 PF04184 ST7: ST7 protein; In 97.9 0.001 2.2E-08 70.6 18.2 191 241-444 173-384 (539)
348 PF05843 Suf: Suppressor of fo 97.9 0.00048 1E-08 71.5 16.1 128 73-200 7-138 (280)
349 PLN02670 transferase, transfer 97.8 0.00053 1.2E-08 76.0 16.9 174 712-895 278-465 (472)
350 TIGR02094 more_P_ylases alpha- 97.8 0.00059 1.3E-08 77.9 17.6 174 709-893 385-598 (601)
351 PF10300 DUF3808: Protein of u 97.8 0.0051 1.1E-07 68.8 23.7 117 285-401 248-376 (468)
352 KOG2041 WD40 repeat protein [G 97.8 0.072 1.6E-06 58.7 30.4 248 14-296 678-936 (1189)
353 PLN02410 UDP-glucoronosyl/UDP- 97.8 0.00097 2.1E-08 73.9 17.3 141 712-860 264-411 (451)
354 PLN03004 UDP-glycosyltransfera 97.7 0.00078 1.7E-08 74.3 15.4 143 712-863 270-428 (451)
355 PRK15180 Vi polysaccharide bio 97.7 0.068 1.5E-06 56.3 27.9 129 7-135 297-425 (831)
356 COG3118 Thioredoxin domain-con 97.7 0.002 4.4E-08 64.0 16.1 161 33-194 134-297 (304)
357 PLN02992 coniferyl-alcohol glu 97.7 0.0013 2.9E-08 73.0 16.6 156 712-874 263-448 (481)
358 PF02259 FAT: FAT domain; Int 97.6 0.02 4.4E-07 62.4 25.9 165 167-336 144-341 (352)
359 PF13281 DUF4071: Domain of un 97.6 0.015 3.3E-07 61.3 23.0 31 205-235 307-337 (374)
360 KOG4642 Chaperone-dependent E3 97.6 0.00042 9.2E-09 65.8 10.3 93 38-130 15-107 (284)
361 PLN02863 UDP-glucoronosyl/UDP- 97.6 0.0024 5.1E-08 71.4 18.1 146 712-863 283-438 (477)
362 KOG4642 Chaperone-dependent E3 97.6 0.00045 9.8E-09 65.6 10.3 93 4-96 15-107 (284)
363 COG0381 WecB UDP-N-acetylgluco 97.6 0.0015 3.3E-08 68.0 14.7 306 536-869 3-351 (383)
364 PF10300 DUF3808: Protein of u 97.6 0.014 3E-07 65.3 23.7 177 258-437 179-378 (468)
365 KOG2941 Beta-1,4-mannosyltrans 97.6 0.00087 1.9E-08 67.2 12.1 125 739-873 290-423 (444)
366 KOG0530 Protein farnesyltransf 97.6 0.014 2.9E-07 56.7 19.5 226 50-275 60-308 (318)
367 PRK13184 pknD serine/threonine 97.6 0.069 1.5E-06 63.8 29.9 99 5-104 481-589 (932)
368 PF13428 TPR_14: Tetratricopep 97.6 0.00016 3.4E-09 50.8 5.1 38 409-446 4-41 (44)
369 KOG0545 Aryl-hydrocarbon recep 97.6 0.0012 2.5E-08 63.0 12.3 103 341-443 181-301 (329)
370 PLN02764 glycosyltransferase f 97.6 0.0015 3.3E-08 71.8 15.2 155 711-872 256-421 (453)
371 KOG0376 Serine-threonine phosp 97.6 0.00012 2.7E-09 77.0 6.4 105 40-144 11-115 (476)
372 KOG0890 Protein kinase of the 97.6 0.13 2.9E-06 65.1 32.6 386 38-439 1388-1837(2382)
373 PF13428 TPR_14: Tetratricopep 97.5 0.00021 4.4E-09 50.2 5.4 43 372-414 1-43 (44)
374 PLN02554 UDP-glycosyltransfera 97.5 0.0031 6.7E-08 71.0 17.8 145 712-865 274-447 (481)
375 PF00201 UDPGT: UDP-glucoronos 97.5 0.00076 1.6E-08 77.5 13.2 163 711-892 275-441 (500)
376 PLN02167 UDP-glycosyltransfera 97.5 0.003 6.6E-08 70.9 17.1 140 712-859 280-434 (475)
377 KOG2041 WD40 repeat protein [G 97.5 0.15 3.2E-06 56.4 28.3 175 101-294 692-876 (1189)
378 PLN02207 UDP-glycosyltransfera 97.5 0.0035 7.6E-08 69.5 17.0 139 712-858 275-425 (468)
379 PLN02448 UDP-glycosyltransfera 97.5 0.0055 1.2E-07 68.7 18.8 135 712-860 274-416 (459)
380 PF13281 DUF4071: Domain of un 97.5 0.025 5.4E-07 59.7 22.2 79 237-315 142-228 (374)
381 PLN02562 UDP-glycosyltransfera 97.5 0.0055 1.2E-07 68.2 18.6 148 712-867 273-421 (448)
382 KOG1550 Extracellular protein 97.5 0.052 1.1E-06 62.4 26.9 145 15-165 228-394 (552)
383 PF13431 TPR_17: Tetratricopep 97.5 0.00012 2.6E-09 47.8 3.2 32 395-426 2-33 (34)
384 KOG0545 Aryl-hydrocarbon recep 97.5 0.002 4.3E-08 61.5 12.4 97 4-100 183-297 (329)
385 KOG0530 Protein farnesyltransf 97.5 0.034 7.4E-07 54.1 20.7 247 47-310 40-309 (318)
386 PLN00164 glucosyltransferase; 97.5 0.0044 9.5E-08 69.5 17.4 143 712-860 272-432 (480)
387 PLN00414 glycosyltransferase f 97.4 0.0025 5.5E-08 70.5 15.0 150 711-872 251-416 (446)
388 KOG0376 Serine-threonine phosp 97.4 0.00019 4.1E-09 75.7 5.5 102 344-445 10-111 (476)
389 PLN02210 UDP-glucosyl transfer 97.4 0.0053 1.1E-07 68.4 17.2 141 712-861 269-417 (456)
390 PLN02173 UDP-glucosyl transfer 97.4 0.0064 1.4E-07 67.2 17.2 140 712-861 264-410 (449)
391 PLN02152 indole-3-acetate beta 97.4 0.007 1.5E-07 67.0 17.5 142 712-861 261-419 (455)
392 COG3118 Thioredoxin domain-con 97.4 0.018 3.9E-07 57.5 18.1 161 67-228 134-297 (304)
393 KOG1550 Extracellular protein 97.4 0.1 2.3E-06 59.9 27.5 174 49-230 228-424 (552)
394 PF02259 FAT: FAT domain; Int 97.4 0.084 1.8E-06 57.5 26.0 166 201-371 144-342 (352)
395 PLN02555 limonoid glucosyltran 97.4 0.0039 8.4E-08 69.5 15.2 141 713-860 278-430 (480)
396 PF07079 DUF1347: Protein of u 97.4 0.29 6.2E-06 51.8 42.5 424 35-465 8-520 (549)
397 PF13431 TPR_17: Tetratricopep 97.3 0.0002 4.3E-09 46.7 3.0 32 361-392 2-33 (34)
398 PLN02208 glycosyltransferase f 97.3 0.004 8.7E-08 68.9 15.1 153 711-872 250-415 (442)
399 cd04299 GT1_Glycogen_Phosphory 97.3 0.0041 9E-08 72.6 15.7 174 709-896 474-691 (778)
400 PLN03015 UDP-glucosyl transfer 97.3 0.0093 2E-07 66.0 17.5 140 712-858 267-425 (470)
401 PRK15180 Vi polysaccharide bio 97.3 0.14 2.9E-06 54.2 24.2 130 42-171 298-427 (831)
402 PF02350 Epimerase_2: UDP-N-ac 97.2 0.0026 5.7E-08 68.1 12.0 138 710-865 178-324 (346)
403 PLN02534 UDP-glycosyltransfera 97.2 0.0042 9.1E-08 69.4 13.8 103 712-821 283-391 (491)
404 TIGR00661 MJ1255 conserved hyp 97.2 0.02 4.3E-07 61.3 18.7 67 769-839 228-295 (321)
405 PF05693 Glycogen_syn: Glycoge 97.2 0.0011 2.4E-08 72.8 8.5 114 781-901 461-587 (633)
406 PLN03007 UDP-glucosyltransfera 97.2 0.013 2.8E-07 66.1 17.5 141 712-860 285-441 (482)
407 PF08631 SPO22: Meiosis protei 97.2 0.26 5.5E-06 51.3 25.8 61 239-299 87-150 (278)
408 PF07719 TPR_2: Tetratricopept 97.2 0.00099 2.1E-08 43.6 4.9 33 407-439 2-34 (34)
409 PF00515 TPR_1: Tetratricopept 97.1 0.00074 1.6E-08 44.2 4.2 32 407-438 2-33 (34)
410 PF00515 TPR_1: Tetratricopept 97.1 0.0013 2.7E-08 43.1 4.8 32 373-404 2-33 (34)
411 COG2976 Uncharacterized protei 97.0 0.044 9.4E-07 51.2 15.8 117 51-168 70-192 (207)
412 PF08631 SPO22: Meiosis protei 97.0 0.57 1.2E-05 48.7 27.0 122 9-130 3-150 (278)
413 COG0790 FOG: TPR repeat, SEL1 97.0 0.23 5E-06 52.4 24.0 130 304-438 109-269 (292)
414 COG1817 Uncharacterized protei 97.0 0.039 8.5E-07 55.3 16.2 286 542-861 3-316 (346)
415 PF07719 TPR_2: Tetratricopept 97.0 0.002 4.4E-08 42.1 5.0 33 373-405 2-34 (34)
416 PRK13184 pknD serine/threonine 96.9 0.7 1.5E-05 55.5 29.0 390 39-459 481-916 (932)
417 PRK11619 lytic murein transgly 96.9 1.3 2.8E-05 51.7 41.9 403 3-433 37-466 (644)
418 KOG1308 Hsp70-interacting prot 96.9 0.00093 2E-08 67.2 4.5 89 43-131 124-212 (377)
419 PF03704 BTAD: Bacterial trans 96.9 0.061 1.3E-06 49.8 16.2 60 374-433 64-123 (146)
420 COG3980 spsG Spore coat polysa 96.9 0.039 8.5E-07 54.5 14.8 140 715-871 161-305 (318)
421 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0046 9.9E-08 62.0 8.6 99 341-439 84-186 (390)
422 KOG0551 Hsp90 co-chaperone CNS 96.9 0.039 8.3E-07 55.7 14.9 99 67-165 81-183 (390)
423 PF06258 Mito_fiss_Elm1: Mitoc 96.8 0.017 3.6E-07 60.5 13.2 200 608-828 53-265 (311)
424 PRK10017 colanic acid biosynth 96.8 0.066 1.4E-06 58.9 17.8 102 759-870 297-404 (426)
425 PF08424 NRDE-2: NRDE-2, neces 96.8 0.095 2.1E-06 55.6 18.6 110 20-129 6-130 (321)
426 COG0790 FOG: TPR repeat, SEL1 96.8 0.68 1.5E-05 48.7 25.1 183 44-235 52-269 (292)
427 KOG1308 Hsp70-interacting prot 96.7 0.0017 3.7E-08 65.4 4.7 88 350-437 126-213 (377)
428 PF03704 BTAD: Bacterial trans 96.7 0.029 6.3E-07 52.0 12.7 123 345-481 13-135 (146)
429 PF01075 Glyco_transf_9: Glyco 96.6 0.003 6.5E-08 64.8 6.0 209 603-828 3-218 (247)
430 COG2976 Uncharacterized protei 96.6 0.12 2.6E-06 48.4 15.4 94 206-300 92-189 (207)
431 COG5159 RPN6 26S proteasome re 96.6 0.85 1.8E-05 45.2 21.4 196 3-198 7-235 (421)
432 PRK10117 trehalose-6-phosphate 96.6 0.039 8.5E-07 60.6 14.1 186 703-900 248-458 (474)
433 PF08424 NRDE-2: NRDE-2, neces 96.6 0.18 3.9E-06 53.6 18.8 164 54-233 6-184 (321)
434 COG2909 MalT ATP-dependent tra 96.5 2.4 5.2E-05 49.3 34.8 230 134-363 414-684 (894)
435 KOG3783 Uncharacterized conser 96.5 1.1 2.3E-05 49.0 23.7 243 186-440 250-525 (546)
436 KOG1538 Uncharacterized conser 96.5 0.32 7E-06 53.4 19.8 85 268-363 745-829 (1081)
437 PF00982 Glyco_transf_20: Glyc 96.4 0.033 7.2E-07 61.9 12.7 180 703-893 268-472 (474)
438 COG2909 MalT ATP-dependent tra 96.4 2.8 6.1E-05 48.8 34.1 292 33-330 347-685 (894)
439 PF13181 TPR_8: Tetratricopept 96.4 0.0059 1.3E-07 39.9 4.0 32 407-438 2-33 (34)
440 TIGR02201 heptsyl_trn_III lipo 96.4 0.034 7.4E-07 60.2 12.3 114 708-828 178-295 (344)
441 PF07429 Glyco_transf_56: 4-al 96.3 0.17 3.8E-06 52.1 15.8 119 713-839 187-311 (360)
442 TIGR02195 heptsyl_trn_II lipop 96.3 0.023 4.9E-07 61.3 10.4 116 704-828 165-286 (334)
443 KOG0128 RNA-binding protein SA 96.3 3 6.6E-05 47.9 39.1 411 48-464 94-558 (881)
444 KOG2114 Vacuolar assembly/sort 96.3 2.8 6E-05 48.2 26.1 110 40-156 341-452 (933)
445 cd03789 GT1_LPS_heptosyltransf 96.2 0.11 2.4E-06 54.4 14.5 81 742-828 153-233 (279)
446 PF04781 DUF627: Protein of un 96.1 0.049 1.1E-06 46.0 9.1 103 5-130 2-107 (111)
447 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.7E-07 38.3 4.2 32 373-404 2-33 (34)
448 PF04910 Tcf25: Transcriptiona 96.0 0.33 7.2E-06 52.1 17.3 168 26-201 33-225 (360)
449 COG4649 Uncharacterized protei 96.0 0.7 1.5E-05 42.3 16.2 120 44-163 69-195 (221)
450 PRK11619 lytic murein transgly 96.0 4.5 9.7E-05 47.3 41.4 399 34-460 34-459 (644)
451 KOG1464 COP9 signalosome, subu 96.0 0.52 1.1E-05 46.2 16.4 17 534-550 362-378 (440)
452 PRK10422 lipopolysaccharide co 96.0 0.058 1.3E-06 58.6 11.7 116 707-828 179-297 (352)
453 PF13174 TPR_6: Tetratricopept 96.0 0.011 2.5E-07 38.1 3.8 31 408-438 2-32 (33)
454 PRK10916 ADP-heptose:LPS hepto 95.9 0.05 1.1E-06 59.0 10.6 111 712-828 181-296 (348)
455 COG4649 Uncharacterized protei 95.9 0.92 2E-05 41.6 16.3 133 180-313 69-209 (221)
456 KOG1464 COP9 signalosome, subu 95.8 0.43 9.3E-06 46.7 15.2 49 183-231 41-93 (440)
457 PF13176 TPR_7: Tetratricopept 95.8 0.0079 1.7E-07 39.8 2.6 27 409-435 2-28 (36)
458 PF04910 Tcf25: Transcriptiona 95.8 0.58 1.2E-05 50.3 17.8 58 171-228 105-164 (360)
459 KOG1538 Uncharacterized conser 95.7 0.39 8.6E-06 52.8 15.9 212 4-229 590-830 (1081)
460 PF09613 HrpB1_HrpK: Bacterial 95.7 0.51 1.1E-05 43.2 14.3 82 36-117 13-94 (160)
461 KOG2396 HAT (Half-A-TPR) repea 95.6 4.1 9E-05 44.1 38.0 90 52-141 90-180 (568)
462 COG1747 Uncharacterized N-term 95.6 4.2 9.2E-05 44.0 26.4 230 64-340 63-295 (711)
463 PLN02205 alpha,alpha-trehalose 95.5 0.21 4.6E-06 59.9 14.8 190 703-900 330-556 (854)
464 KOG3783 Uncharacterized conser 95.5 0.53 1.1E-05 51.3 15.9 90 17-108 251-344 (546)
465 PF13174 TPR_6: Tetratricopept 95.5 0.03 6.4E-07 36.1 4.3 31 374-404 2-32 (33)
466 PRK02797 4-alpha-L-fucosyltran 95.3 0.37 8.1E-06 49.0 13.3 162 714-895 149-316 (322)
467 KOG3824 Huntingtin interacting 95.3 0.062 1.3E-06 53.3 7.6 68 379-446 123-190 (472)
468 KOG3824 Huntingtin interacting 95.3 0.047 1E-06 54.2 6.7 68 347-414 125-192 (472)
469 COG0380 OtsA Trehalose-6-phosp 95.2 0.53 1.1E-05 51.8 15.1 169 713-894 282-478 (486)
470 COG5159 RPN6 26S proteasome re 95.1 4.1 8.9E-05 40.6 21.5 196 37-232 7-235 (421)
471 PRK10941 hypothetical protein; 94.9 0.21 4.5E-06 50.9 10.6 70 341-410 184-253 (269)
472 PF04781 DUF627: Protein of un 94.9 0.3 6.6E-06 41.3 9.6 90 108-197 3-106 (111)
473 KOG1463 26S proteasome regulat 94.9 5.2 0.00011 41.1 22.5 195 3-197 8-237 (411)
474 PF14561 TPR_20: Tetratricopep 94.9 0.2 4.4E-06 41.4 8.5 63 392-454 8-72 (90)
475 KOG1920 IkappaB kinase complex 94.9 12 0.00027 45.1 26.5 49 376-431 1003-1051(1265)
476 PF09613 HrpB1_HrpK: Bacterial 94.8 0.5 1.1E-05 43.2 11.5 77 6-82 17-93 (160)
477 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.1 2.3E-06 37.8 5.7 34 3-36 5-38 (53)
478 PF14561 TPR_20: Tetratricopep 94.8 0.33 7.2E-06 40.1 9.5 64 19-82 8-73 (90)
479 PRK10941 hypothetical protein; 94.7 0.19 4.2E-06 51.1 9.7 70 374-443 183-252 (269)
480 PF13176 TPR_7: Tetratricopept 94.7 0.061 1.3E-06 35.6 4.1 25 375-399 2-26 (36)
481 KOG1192 UDP-glucuronosyl and U 94.7 0.67 1.5E-05 53.2 15.4 147 713-872 278-435 (496)
482 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.16 3.5E-06 36.8 6.4 32 71-102 5-36 (53)
483 PRK14089 ipid-A-disaccharide s 94.6 0.29 6.3E-06 52.2 11.2 78 724-818 183-260 (347)
484 KOG0128 RNA-binding protein SA 94.6 11 0.00025 43.5 38.3 412 15-431 95-559 (881)
485 PF04101 Glyco_tran_28_C: Glyc 94.6 0.057 1.2E-06 51.4 5.4 94 770-869 55-154 (167)
486 TIGR02561 HrpB1_HrpK type III 94.5 1.3 2.9E-05 39.7 13.1 73 10-82 21-93 (153)
487 KOG2114 Vacuolar assembly/sort 94.5 12 0.00026 43.4 27.9 246 6-270 341-595 (933)
488 COG4976 Predicted methyltransf 94.1 0.18 3.9E-06 48.2 7.1 61 381-441 4-64 (287)
489 PF13041 PPR_2: PPR repeat fam 94.0 0.23 5E-06 35.7 6.2 45 405-449 2-46 (50)
490 KOG1463 26S proteasome regulat 93.7 9.5 0.00021 39.3 22.5 57 37-93 8-74 (411)
491 COG3914 Spy Predicted O-linked 93.7 2.7 5.9E-05 46.5 16.0 131 289-419 50-189 (620)
492 PF12968 DUF3856: Domain of Un 93.5 1.1 2.3E-05 38.2 9.9 58 3-60 13-82 (144)
493 KOG3364 Membrane protein invol 93.4 1.6 3.4E-05 38.4 11.1 74 32-105 31-109 (149)
494 smart00028 TPR Tetratricopepti 93.4 0.12 2.6E-06 32.5 3.6 31 408-438 3-33 (34)
495 COG1747 Uncharacterized N-term 93.3 15 0.00032 40.1 26.3 96 202-299 65-160 (711)
496 KOG3364 Membrane protein invol 93.2 0.82 1.8E-05 40.1 9.0 74 370-443 30-108 (149)
497 TIGR02561 HrpB1_HrpK type III 93.2 3.9 8.4E-05 36.9 13.5 71 351-421 23-93 (153)
498 PF04053 Coatomer_WDAD: Coatom 93.2 3.1 6.7E-05 46.1 16.0 128 43-195 271-399 (443)
499 KOG3807 Predicted membrane pro 93.0 12 0.00026 38.2 18.2 191 242-445 190-401 (556)
500 PF12968 DUF3856: Domain of Un 92.8 2.7 5.9E-05 35.9 11.2 85 350-434 21-128 (144)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-156 Score=1193.47 Aligned_cols=915 Identities=55% Similarity=0.904 Sum_probs=895.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+++|..+++.|+|++|.+....+...+|.+.+.+..++.++++..+++.....-..+++.+|.-.++|..+|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++++|+..|+.++++.|++.++|.++|.++...|+.+.|...|..+++++|....+...+|.++...|+..+|..+|.++
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 240 (922)
++..|....+|.+||.++..+|+...|+..|+++++++|...++|.++|.+|...+.+++|+..|.+++...|+ ..++.
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
+++.+|+++|..+-|+..|+++++..|+.+++|.+++.++...|+..+|..+|.+++.+.|..+++.++||.+|.++|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
++|..+|+++++..|..+.++++||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.+++.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCC
Q 002431 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480 (922)
Q Consensus 401 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 480 (922)
.+|..++++.+||.+|...|+..+|+..|+.++++.|+++++++|++.++.+.++|.+..+.++++.+++++++.....|
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlp 530 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLP 530 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhHHhh
Q 002431 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFG 560 (922)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~~~~ 560 (922)
.+.|+++++|+++|....+++++++.+|......++.||+.||...| .+.+|+||||||+||++||+++++.++..
T Consensus 531 svhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~----~~~~rlrIGYvSsDFgnHp~Shlmqsv~g 606 (966)
T KOG4626|consen 531 SVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLK----VKEGRLRIGYVSSDFGNHPTSHLMQSVPG 606 (966)
T ss_pred ccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCC----CCcCceEEEeecccccCCchHHHhccCcC
Confidence 99999999999999999999999999999999999999999887665 34589999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEE
Q 002431 561 MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV 640 (922)
Q Consensus 561 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~ 640 (922)
+|||++|||+||+.+++++..++.++...+.+|+++.+++...++..|++|+|||||.+.|||.|+|..+|++|||||||
T Consensus 607 mHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv 686 (966)
T KOG4626|consen 607 MHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQV 686 (966)
T ss_pred cCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeE
Confidence 99999999999999999988899999999999999999998899999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC
Q 002431 641 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720 (922)
Q Consensus 641 ~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~ 720 (922)
+|+|||+|||.+.|||+|||.+..|++....|+|+++++|+|+++.++.+....+.+|...|.|..+|||+|.||||+||
T Consensus 687 ~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FN 766 (966)
T KOG4626|consen 687 MWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFN 766 (966)
T ss_pred EeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeech
Confidence 99999999999999999999999999999999999999999999999988777777777778999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCC
Q 002431 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCN 800 (922)
Q Consensus 721 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~ 800 (922)
+++|+.|.+++.|++||+++|||+||+..++..++++++..+++.|++++||+|.+....+||+++++.+||.|||++++
T Consensus 767 qLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn 846 (966)
T KOG4626|consen 767 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN 846 (966)
T ss_pred hhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC
Confidence 99999999999999999999999999999998889999999999999999999999988999999999999999999999
Q ss_pred ChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 801 AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 801 g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|+||.+|.||+|||+||++|+++++||++|.|..+|+++ +|+.+.+||++++++|++|.+.++.+|..+|..+..||+|
T Consensus 847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splf 925 (966)
T KOG4626|consen 847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLF 925 (966)
T ss_pred CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCCCCCCC
Q 002431 881 DTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLDFPCDR 922 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (922)
|..+++..+|.+|.+||++||.|+.|+|+ +-+++++.|-++
T Consensus 926 d~~q~~~~LE~~y~~MW~~y~~G~~p~h~-~me~~~e~~hd~ 966 (966)
T KOG4626|consen 926 DTKQYAKGLERLYLQMWKKYCSGEVPDHR-RMENLQEEPHDD 966 (966)
T ss_pred CchHHHHHHHHHHHHHHHHhccCCCCchH-HHhccccCcCCC
Confidence 99999999999999999999999999999 667888888765
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-95 Score=747.18 Aligned_cols=553 Identities=31% Similarity=0.495 Sum_probs=463.5
Q ss_pred HHHHhcCCCCchhhhh--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhhCCC
Q 002431 328 KATLAVTTGLSAPFNN--LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIRPT 404 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~ 404 (922)
...+..++.++..... +...+...+....+...+...+..+|++..+..+++......|....+...+.. +....|+
T Consensus 55 ~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 55 LLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPD 134 (620)
T ss_pred HccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 3333344444443222 344555667777777777777888888888888887777777766666655555 6677777
Q ss_pred cHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH-hHHHHHHHHHHHHHhccC
Q 002431 405 MAEAHANL------ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR-DRMFSEVEGIIRRQVNMS 477 (922)
Q Consensus 405 ~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 477 (922)
+......+ +.....+|+..++....+++..+.|+++.+...++......|+|.+- ...+-.....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~------ 208 (620)
T COG3914 135 NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFL------ 208 (620)
T ss_pred hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHHh------
Confidence 76655444 77788888999999999999999999999888888887777877631 111111111110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhH
Q 002431 478 VLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGS 557 (922)
Q Consensus 478 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~ 557 (922)
...+|..+.+...+...+.++.++.+.++..++. .+.+.... . +....++|+||||+|+|++.|+||+++.+
T Consensus 209 ---~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~~~~--~~~~~~~~-~--~~~~~~~rlRvGylS~dlr~Havg~l~~~ 280 (620)
T COG3914 209 ---GIYGFSLAYLADDPLKNLAIANQLLKILSQNAPE--LVRFPIRD-E--NIKRNGKRLRVGYLSSDLRSHAVGFLLRW 280 (620)
T ss_pred ---hccccchhhhccchhhhHHHHHHHHHHhcccCCC--ccccccch-h--hccccccceeEEEeccccccchHHHHHHH
Confidence 1122444445556777888888887776533321 11221111 0 12245789999999999999999999999
Q ss_pred HhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCc
Q 002431 558 VFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAP 637 (922)
Q Consensus 558 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap 637 (922)
++++|||++|||++|+.++...+.++++++..+.+|+++.+|++.+++..|+.|+||||||++|||+-+|..+|++||||
T Consensus 281 v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAP 360 (620)
T COG3914 281 VFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAP 360 (620)
T ss_pred HHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCc
Confidence 99999999999999999977777899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEE
Q 002431 638 IQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFA 717 (922)
Q Consensus 638 vq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~ 717 (922)
|||+|+|||+|+|+|.|||||+|.++.|++++.+|+|++||||.|+..++... + ..+++.|.++|||++.+||+
T Consensus 361 iqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~cy~p~d~~~---~---v~p~~sR~~lglp~~avVf~ 434 (620)
T COG3914 361 IQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFE---P---VTPPPSRAQLGLPEDAVVFC 434 (620)
T ss_pred eEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhcccccCCCCCcc---c---CCCCcchhhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999888776542 1 23347899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCC--hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEec
Q 002431 718 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFP--AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLD 795 (922)
Q Consensus 718 ~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~ 795 (922)
||++.+|++|++++.|++|++++|||+|||.+.| +....+|+..+++.||+.+|++|.|..|.++|.+.|..+|||||
T Consensus 435 c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLD 514 (620)
T COG3914 435 CFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLD 514 (620)
T ss_pred ecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeee
Confidence 9999999999999999999999999999999874 44467999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002431 796 TPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (922)
Q Consensus 796 ~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~ 875 (922)
|+||+|+||++|||||||||||+.|++|+||+|+|+++++|+|| +|++|.++||+++++++.|...+++.|..++.++.
T Consensus 515 TyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e-~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~ 593 (620)
T COG3914 515 TYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPE-LVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQ 593 (620)
T ss_pred cccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCch-hhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 876 TCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 876 ~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
++|+||++.|+++||.+|.+||..+.
T Consensus 594 tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 594 TSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred cCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999874
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=7e-89 Score=717.43 Aligned_cols=360 Identities=51% Similarity=0.878 Sum_probs=297.5
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-HHHHHHHHHhCCCeE
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-SDMIAKLINEDKIQI 615 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~di 615 (922)
|||||||+||++||+++++.+++++|||++|||+||+.++++++.++++++..+++|+++..++ +.+++++|++|+|||
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~IDI 80 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADGIDI 80 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT-SE
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCCCCE
Confidence 7999999999999999999999999999999999999998777778999999999999999886 578999999999999
Q ss_pred EEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCcccc---
Q 002431 616 LINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKN--- 692 (922)
Q Consensus 616 l~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~--- 692 (922)
||||+|||.|+|+.+|++||||||++|+|||+|||++.|||+|+|.+++|++.+.+|+|++++||++|+++++....
T Consensus 81 LVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~~~~ 160 (468)
T PF13844_consen 81 LVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMFPHL 160 (468)
T ss_dssp EEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-GGG
T ss_pred EEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764210
Q ss_pred --------------------------------------------------------------------------------
Q 002431 693 -------------------------------------------------------------------------------- 692 (922)
Q Consensus 693 -------------------------------------------------------------------------------- 692 (922)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (468)
T PF13844_consen 161 KERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIASGQVQ 240 (468)
T ss_dssp SS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHHT-SE
T ss_pred hhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHcCCee
Confidence
Q ss_pred ------------------------ccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q 002431 693 ------------------------MDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL 748 (922)
Q Consensus 693 ------------------------~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~ 748 (922)
..+|.......|++||||+|++||||||++.|++|+++++|++||+++|+|+|||.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~ 320 (468)
T PF13844_consen 241 TSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLL 320 (468)
T ss_dssp EEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred EeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 00001111238999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
..+..+++.+++.++++||+++||+|.+..+..+|+..|+.+||+||||||+||+|++|||||||||||++|++++||+|
T Consensus 321 ~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~ 400 (468)
T PF13844_consen 321 RFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVG 400 (468)
T ss_dssp ETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHH
T ss_pred eCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHH
Confidence 87777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 829 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 829 ~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
+|+|..+|++| ||+.|.++|+++|++|++|++.|+++|+++|+++.++|+||.++|+++||++|++||
T Consensus 401 aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 401 ASILRALGLPE-LIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp HHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-46 Score=381.96 Aligned_cols=437 Identities=31% Similarity=0.438 Sum_probs=427.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
.......++.-.++.|+|++|.+....+...+|.+.+....++..+++..++++....-..+++.+|...++|.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 34557788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
...|++++|+..|+.++++.|+..++|.++|.++..+|+.+.|..+|..+++++|+...+...+|.++...|+..+|...
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
|.++++..|....+|.++|.++..+|+...|+..|+++++++|+ ..+|.++|.+|.+.+.+++|+..|.+++...|+..
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 350 (922)
.++.+++.+|.++|..+-|+..|+++++..|..++++++++.++...|+..+|..+|.+++.+.|+.+.+.++||.+|.+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+|++++|..+|.++++..|..+.++.++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+.+.|++.|.
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
++++.+|...++..||+..+...|+..+|...++++.+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999999999999999999988888876
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-39 Score=400.85 Aligned_cols=461 Identities=23% Similarity=0.291 Sum_probs=336.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
.++..+.+.|++++|+..++++....|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 34555566666666666666666666666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
++|++.|+++++..|++..++..++.++...|++++|...+++++..+|.+...+..++..+...|++++|+..++++++
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777776777777777777777777777777777777777666777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
..|.+...|..++.++...|++++|+..++++++..|.++..+..++.++...|++++|...++++++..|+ ...+..+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777777777777776666 6666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhH
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 322 (922)
+.++...|++++|+..++.+....|.....+..+|.++...|++++|++.|+++++..|++ ..+..++.++...|++++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777776677777777777777777777777777777777777665 566667777777777777
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 323 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
|...++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..++++++..
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777 67777777777777
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHH
Q 002431 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEV 466 (922)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 466 (922)
|+++.++..+|.++...|++++|.++|+++++.+|.++.++.+++..+...|++++|...++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777776666654
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-38 Score=392.26 Aligned_cols=464 Identities=23% Similarity=0.256 Sum_probs=313.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----------------- 65 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 65 (922)
..++..+...|++++|+..|+++++.+|++...+..+|.++...|++++|++.++++++..|.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 456677777777777777777777777777777777777777777777777777666666554
Q ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 66 -----------------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQAL 128 (922)
Q Consensus 66 -----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 128 (922)
++..+..+|.++...|++++|++.|+++++.+|++..++..++.++...|++++|.+.+++++
T Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555556666666666666666665556555556666666666666666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 129 ALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLN 208 (922)
Q Consensus 129 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 208 (922)
..+|.+..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++..|.++..+..
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 65666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 209 LGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
++.++...|++++|+..|+++++..|+ ...+..++.++...|++++|+..++++++.+|++..++..++.++...|+++
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666666666555 5556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
+|...++.+.+..|.++..+..+|.++...|++++|...|++++...|++ ..+..++.++...|++++|++.++++++.
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666667777777777777777777777766665 55666777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|++..+++.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ .+|+..++++++..|+++..+..++
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777 6677777777777777777777777
Q ss_pred HhhcccCChhhHhHHHHHHHH
Q 002431 448 HTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 448 ~~~~~~~~~~~a~~~~~~~~~ 468 (922)
..+...|++++|...++++.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777776666666554
No 7
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2e-37 Score=350.79 Aligned_cols=546 Identities=12% Similarity=0.062 Sum_probs=372.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
.+++.-+.......|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444445558888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
.+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876655555554
Q ss_pred HHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCC
Q 002431 447 LHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPI 526 (922)
Q Consensus 447 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (922)
+.-+. .....+++....+..-+..+ ..+...... ..|... ++.
T Consensus 229 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~--------------~~~-- 271 (694)
T PRK15179 229 LVDLN-------------ADLAALRRLGVEGDGRDVPV-----SILVLEKML---QEIGRR--------------RNA-- 271 (694)
T ss_pred HHHHH-------------HHHHHHHHcCcccccCCCce-----eeeeHHHHH---HHHhhc--------------Ccc--
Confidence 43322 22222333222222111111 111111110 011110 000
Q ss_pred ccccCCCcccc-eeeeecCCCCCChhHhhhhHHhhcCCCCCe--------------EEEEEecCCCCC-hHHHHHHHhcc
Q 002431 527 PIRLDGGLRRL-RVGYVSSDFGNHPLSHLMGSVFGMHNKENV--------------EVFCYALSPNDG-TEWRQRTQSEA 590 (922)
Q Consensus 527 ~~~~~~~~~~~-rig~~s~~~~~h~~~~~~~~~~~~~~~~~~--------------e~~~~~~~~~~~-~~~~~~~~~~~ 590 (922)
. -...|.++. ||.++...+..++..+++..|..++++.++ +|+|+.....++ +.+...++..+
T Consensus 272 ~-~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G 350 (694)
T PRK15179 272 E-YDAGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG 350 (694)
T ss_pred c-ccCCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence 0 011345667 899999999999999999999999988755 566664432222 34555665555
Q ss_pred CceEECCCCC----------------------------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc---C--CCc
Q 002431 591 EHFVDVSAMS----------------------------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM---Q--PAP 637 (922)
Q Consensus 591 ~~~~~~~~~~----------------------------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~---~--~ap 637 (922)
.....+.... ...+.+.|++.++||+ |+|..+..+++. + ..|
T Consensus 351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIV-----H~h~~~a~~lg~lAa~~~gvP 425 (694)
T PRK15179 351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVV-----HIWQDGSIFACALAALLAGVP 425 (694)
T ss_pred CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEE-----EEeCCcHHHHHHHHHHHcCCC
Confidence 4332221110 1567889999999999 777665544322 2 247
Q ss_pred eEE-eccccCCCCCCCc-----------ccEEEecCccCCcCcc--------CCCccceeecCCccccCCCccccccCCC
Q 002431 638 IQV-SYMGFPGTTGASY-----------IDYLVTDEFVSPLRYA--------HIYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 638 vq~-~~~g~~~t~g~~~-----------~d~~~~d~~~~~~~~~--------~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
+.+ ++.+.+....... +...-.+.+++.+... ..-.+++..+|++. +...+.++
T Consensus 426 vIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGV------d~~~f~~~ 499 (694)
T PRK15179 426 RIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGL------APLKSVQD 499 (694)
T ss_pred EEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCc------CHHhcCCC
Confidence 765 4333321111000 0000011222222211 11122333444332 11111111
Q ss_pred CCCCCCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 698 PNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 698 ~~~~~~r~--~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
+.....+. ..+++++.+++|+++|+ .|+++.+++++++++++.|+.+|+|+|+|+. ++.+++.++++|+ .++|+
T Consensus 500 ~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~-~~~L~~l~~~lgL-~~~V~ 577 (694)
T PRK15179 500 DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL-LESVREFAQRLGM-GERIL 577 (694)
T ss_pred chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc-hHHHHHHHHHcCC-CCcEE
Confidence 11111111 22356667888888876 5999999999999999999999999999876 8899999999999 59999
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--C--HHH
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--S--MKE 848 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~--~~~ 848 (922)
|+|..+ +...+|+.+||||.||.++| |++++|||+||+|||+........-+. -|.++ +++. | .++
T Consensus 578 flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~------dg~~G-lLv~~~d~~~~~ 648 (694)
T PRK15179 578 FTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQ------EGVTG-LTLPADTVTAPD 648 (694)
T ss_pred EcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHcc------CCCCE-EEeCCCCCChHH
Confidence 999854 66777999999999999999 999999999999999654332222221 15555 4432 3 357
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 849 YEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 849 ~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++.+.+++.+......++++.++.. ...||++.++++++++|+
T Consensus 649 La~aL~~ll~~l~~~~~l~~~ar~~a--~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 649 VAEALARIHDMCAADPGIARKAADWA--SARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHhChhccHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 77777776665555556666676655 235999999999999995
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-36 Score=372.83 Aligned_cols=467 Identities=16% Similarity=0.102 Sum_probs=284.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-----------
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY----------- 70 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------- 70 (922)
++.+++.....++.+.|.+.+++++..+|+++.++..++.++...|+.++|.+.++++++.+|+++.++
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 455666667777777777777777777777777777777777777777777777777777777665442
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 71 -----GNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 71 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
..+|.++...|++++|++.|+++++.+|.+... ......+....|++++|++.++++++.+|++..++..++.+
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444556666677777777777766666554331 11112222234666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC----------------------------------CcHHH-------------------
Q 002431 145 MKAQGLVQEAYSCYLEALRIQP----------------------------------TFAIA------------------- 171 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~------------------- 171 (922)
+...|++++|+..+++++...+ .....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 6666666666666665543211 10000
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-h------------
Q 002431 172 -WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA-I------------ 237 (922)
Q Consensus 172 -~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~------------ 237 (922)
...++..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. .
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 00224455566666666666666666666666666666666666666666666666666655541 0
Q ss_pred --HHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHH---
Q 002431 238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN--- 312 (922)
Q Consensus 238 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--- 312 (922)
....++..+...|++++|+..|++++..+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112335555666666666666666666666666666666666666666666666666666666665544333322
Q ss_pred ---------------------------------------HHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCC
Q 002431 313 ---------------------------------------IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353 (922)
Q Consensus 313 ---------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 353 (922)
.+...|++++|+..|+++++.+|+++.+++.++.+|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 23345666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHccCCCCHH------------------------------------------------------------
Q 002431 354 YADAISCYNEVLRIDPLAAD------------------------------------------------------------ 373 (922)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 373 (922)
+++|+..++++++.+|.++.
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 66666666666665555544
Q ss_pred --------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 374 --------------GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 374 --------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+..+|.++.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.++++++..|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 444555666666666666777777776667666677777777777777777777777666666666
Q ss_pred HHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 440 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+.+...+...+...|++++|...++++..
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-36 Score=372.06 Aligned_cols=466 Identities=18% Similarity=0.135 Sum_probs=403.2
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+.+|+.+...|++++|++.|+++++.+|.+.. +......+....|++++|++.|+++++.+|+++.++..+|.++...|
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 56788899999999999999999998887754 22233334445699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC----------------------------------CcHH---H-----------------HHHH
Q 002431 82 DIDLAIRYYLVAIELRP----------------------------------NFAD---A-----------------WSNL 107 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p----------------------------------~~~~---~-----------------~~~l 107 (922)
++++|+..++++++..+ +... + ...+
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865322 1110 0 0123
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--------------HHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------------AWS 173 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~ 173 (922)
|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++.. ...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 677888999999999999999999999999999999999999999999999999999887642 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHh-----------
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN----------- 241 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~----------- 241 (922)
.++..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+ ..++..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 45778889999999999999999999999999999999999999999999999999998887 333333
Q ss_pred -------------------------------HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 242 -------------------------------LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 242 -------------------------------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
++..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHH----------------------------------------
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT---------------------------------------- 330 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a---------------------------------------- 330 (922)
..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998888887777777777777665542
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++..++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 22467788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPE------ATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+|.++...|++++|++.|+++++..|+++. ++..++..+...|++++|...++++..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998876543 455667788888999999999888753
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.6e-34 Score=336.84 Aligned_cols=433 Identities=15% Similarity=0.158 Sum_probs=319.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
..+|..+++.|+|++|+..|++++...|+ +..+..+|.||..+|++++|++.++++++.+|++..+++.+|.+|...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 35677777777777777777777777774 56677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|..+...++.+......+...... ..+.......++..|.+...+..++..+.. .....+...+....
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhhhccc
Confidence 7777777776666554433222111111111 234444555556666555555555554322 22222333334444
Q ss_pred hhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-
Q 002431 163 RIQPTFAIAWSNLAGLFM---ESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN- 235 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 235 (922)
+.++.....+..++..+. ..+++++|++.|++++... |....++..+|.++...|++++|+..|+++++.+|+
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444544444444444332 2467888888888888753 666678888888888889999999999998888887
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 77888888888888999999999998888888888888888988888899999999999998888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHHH-HHhCCH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG------LVNRGNTY-KEIGRV 388 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~ 388 (922)
+.|++++|+..|++++...|.++.+++.+|.++...|++++|++.|++++++.|..... +...+..+ ...|++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 89999999999998888888888888888999888999999999999988888764322 22223333 346888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
++|+..++++++++|++..++..+|.++...|++++|+.+|++++++.+....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 89999999988888888888888899999999999999999998888776544
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.9e-34 Score=330.98 Aligned_cols=434 Identities=17% Similarity=0.202 Sum_probs=369.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|..++..|+|++|+..|+++++..|+ +..+..+|.+|...|++++|++.++++++.+|++..++..+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|+..|..+...++.+......+...... ..+......+++..|.+...+..++..+. ......+...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhh
Confidence 99999999999988877765544332222221111 34556666777778877666666666543 22333334444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYK---ALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
....+.++.....+..++..+. ..+++++|++.|+++++.. |+ ..++..++.++...|++++|+..+++++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555556665555566555443 3478999999999999864 44 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 345 (922)
+|+....|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++...+..+|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH------HHH-HHHHHh
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH------ANL-ASAYKD 418 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l-a~~~~~ 418 (922)
.++.++|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++++.|++...+ ... +..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998753322 222 234445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHH
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRR 472 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 472 (922)
.|++++|.+.++++++++|++..++..++..+...|++++|...|+++.++.+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999999999999886543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.5e-31 Score=315.11 Aligned_cols=456 Identities=17% Similarity=0.090 Sum_probs=322.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+ +
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~ 122 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----P 122 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----c
Confidence 467788888889999999999999999999999999999999999999999999999999999999888888666 9
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--------HHH--------------------------------cCCHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASA--------YMR--------------------------------KGRLNEAA 121 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~--------------------------------~g~~~~A~ 121 (922)
++++|+..|+++++.+|++.+++..++.. |.+ +|++++|+
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999988877666665 333 34444444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-- 198 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 198 (922)
..++++.+.+|.+......++.+|.. +++ +++..+++..++ .++.++..++..|.+.|+.++|.+.+++.-..
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 44444444444444444444444444 233 444444332111 33334444455555555555555444332111
Q ss_pred --------------------------------------------------------------------------------
Q 002431 199 -------------------------------------------------------------------------------- 198 (922)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (922)
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------------------------------
Q 002431 199 -------------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------------------------------- 232 (922)
Q Consensus 199 -------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------- 232 (922)
.|.+......++......|+.++|..+|+++...
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0222223333334444455555555555543320
Q ss_pred --------------------------------CC---ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 233 --------------------------------RP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277 (922)
Q Consensus 233 --------------------------------~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 277 (922)
.| +..++..+|.++.. ++.++|+..+.+++...|+.. ....++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA 516 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVA 516 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHH
Confidence 01 23456778877776 777788888888887777654 355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
..+...|++++|+..|+++....|. ...+..+|.++.+.|++++|..+|+++++..|+....+..++......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 6667788888888888887665444 345667777888888888888888888887777766666666666666888888
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
+..|+++++.+|+ +..+..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888888888885 777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 438 DFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 438 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+++.+++++..++...|++++|...++++.++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888887777776544
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-32 Score=294.84 Aligned_cols=462 Identities=21% Similarity=0.296 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 91 (922)
+..+..++.++...++.+|.++..++.-++..|+|+.+..+...++..... .++.++.+|.+|..+|+|++|..+|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 444555555555555555555555666666666666666666666554322 24456667777777777777777777
Q ss_pred HHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCC
Q 002431 92 VAIELRPNF-ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG----LVQEAYSCYLEALRIQP 166 (922)
Q Consensus 92 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p 166 (922)
++++.++++ .-.++.+|++|...|+++.|..+|+++++..|++.++...+|.+|...+ ..+.|..+..++++..|
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 777666665 5566667777777777777777777777777777777777776666654 45566666666666666
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC-
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RPN- 235 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~- 235 (922)
.+..+|..++.++....-+.. +..|..++.. .+--++.++++|..++..|++++|...|.+++.. +++
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 666666666666655443333 6666665532 2233567777777777888888888888877765 111
Q ss_pred -----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 236 -----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 236 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
....++++.++...++++.|.+.|..+++..|...+++..+|......++..+|...++.++..+..++.++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 224677888888888888888888888888888888888887666677777888888888877777776666666
Q ss_pred HHHHHH------------------------------------------------cCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 311 GNIYME------------------------------------------------WNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 311 a~~~~~------------------------------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
|.++.. .+.+++|++.|.+++..+|.|..+-+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 654442 23467888899999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHhcC
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDSG 420 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 420 (922)
.+|.++...|++.+|+.+|.+..+-..+..++|.++|.||..+|+|..|++.|+.+++.. .++.+++..||.++...|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999988777788899999999999999999999999999874 467889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCC------------hhhHhHHHHHHHHHHHHHhccC
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS------------WEDRDRMFSEVEGIIRRQVNMS 477 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~ 477 (922)
.+.+|.+...+++.+.|.++.+.+|++......+. ..++...++.+.+++..+...+
T Consensus 731 ~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988877654321 2234445555666666665544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-32 Score=295.20 Aligned_cols=467 Identities=19% Similarity=0.244 Sum_probs=264.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
++..|...+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.++.++..||.+-...
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4566777888888888888888888877743 566677788888888888888888888888777666666666555443
Q ss_pred C---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHH
Q 002431 81 G---DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 81 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A 154 (922)
. .+..+...+.++...++.+|.+...++..++-.|+|+.+..+...++.... -..+.++.+|.++..+|++++|
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 3 345566666666666666666555555555555555555555555554431 2233455555555555555555
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 002431 155 YSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG----MPQEAIMCYQRA 229 (922)
Q Consensus 155 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 229 (922)
..+|.++++.++++ ...++.+|+.|...|+++.|...|++.++..|++.++...+|.+|...+ ..+.|..++.++
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 55555555555554 4445555555555555555555555555555555555555555554443 334444444444
Q ss_pred HhhCCC---------------------------------------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 230 VQTRPN---------------------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 230 ~~~~p~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
++..|. .+..+++|..++..|++.+|...|.++++.
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 444433 444445555555555555555555555432
Q ss_pred CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 266 DPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 266 ~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
+++. ....++++.++...++++.|.+.|..+++..|...+++..+|.+....++..+|...++.++..+..++.+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 1111 11344555555555555555555555555555555555555544444455555555555555555555555
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHH------------hCCHHHHHHHHHHHHhhCCCcH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYKE------------IGRVTDAIQDYIRAITIRPTMA 406 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~ 406 (922)
+..+|.++....++..|.+-|+..++.. ..++.++..+|.++.+ .+.+++|++.|.++++.+|.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 5555555444444444444333333221 1233344444444432 2345666666666666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+-+.+|.++...|++.+|+.+|.++.+-..++.++|.|++++|..+|+|..|...|+.+..
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666656666666666666666666666555555443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=6.7e-30 Score=302.82 Aligned_cols=422 Identities=14% Similarity=0.050 Sum_probs=350.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
+..++. -...|.++....-...+....|+.++|++.+.++...+|..+.++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5556777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
+++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999998999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhh---CCChh-----
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYK-----ALGMP---QEAIMCYQRAVQT---RPNAI----- 237 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~---~p~~~----- 237 (922)
+...+..++|+..++++.. .|+... ....+..+.. ..+++ ++|++.++.+++. +|+..
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 9988999999988887765 443211 1222222222 22234 7788888888865 33311
Q ss_pred HHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHhHHH
Q 002431 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH----PQALTNLGN 312 (922)
Q Consensus 238 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 312 (922)
+.......+...|++++|+..|+++++..+.. ..+...++.++...|++++|+..|+++++..|.+ ......++.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11221234467799999999999998775432 2234446889999999999999999998887765 346677788
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 313 IYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 313 ~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
++.+.|++++|+..++++....|.. ..++..++.++...|++++|++.+++++...|.++.++..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8899999999999999999887632 2356788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+|.++...|++++|++.++++++++|++..+++.++..+...|++++|...++++++..|+++.+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.3e-29 Score=293.61 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=307.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
+.......+..+.+.|++++|...++.++...|+++.++..++.+....|++++|+..++++++.+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34445566777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888877776654 47778888888888
Q ss_pred HHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhh
Q 002431 226 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE----AIQCYNQCLSL 299 (922)
Q Consensus 226 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~ 299 (922)
++++++..|. ......++.++...|++++|+..+++++..+|++..++..+|.++...|++++ |+..|+++++.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8888877653 34445567788888999999999999999999999899999999999999885 79999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
+|+++.++..+|.++...|++++|+..+++++...|+++.++..++.++.+.|++++|+..|+++++.+|.+...+..+|
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777788
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+.....
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccch
Confidence 899999999999999999999988864 345567888888888776555433
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=8.8e-29 Score=291.71 Aligned_cols=457 Identities=13% Similarity=0.018 Sum_probs=375.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--------
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM-------- 73 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 73 (922)
++.+|..|+..|++++|+..++++++.+|.+...+..++.+ +++++|+..|+++++.+|++.+++..+
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence 57889999999999999999999999999888888777666 889999999999999988865544333
Q ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHH
Q 002431 74 --------------------------------ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEA 120 (922)
Q Consensus 74 --------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 120 (922)
+.+|.++|++++|++.+.++.+..|.+......++.+|.. +++ +++
T Consensus 157 ~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 157 ALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHH
Confidence 4556778999999999999999999999999999999998 477 888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL----------------------------------------- 159 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------------- 159 (922)
..+++..++ .++.++..++..+.+.|+.++|...++
T Consensus 236 ~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 236 LALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 888665333 445555555555555555555544442
Q ss_pred --------------------------------------------------------------------------------
Q 002431 160 -------------------------------------------------------------------------------- 159 (922)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (922)
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence
Q ss_pred --------HHHhhCCCc---HHHHHHHHHHHHHcCC-------------------------H---HHHHHHHHHHHhcCC
Q 002431 160 --------EALRIQPTF---AIAWSNLAGLFMESGD-------------------------L---NRALQYYKEAVKLKP 200 (922)
Q Consensus 160 --------~al~~~p~~---~~~~~~la~~~~~~g~-------------------------~---~~A~~~~~~~l~~~p 200 (922)
.+....++. ......++.+|...+. + ..+...+.+++...|
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 222210000 1111233333333322 1 112223333444567
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 201 T--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278 (922)
Q Consensus 201 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 278 (922)
. ++.++..+|.++.. ++.++|+..+.+++...|+......++..+...|++++|+..++++....|... .+..+|.
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~ 550 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAAN 550 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 7 89999999999987 899999999999999999866666778888899999999999999887766654 6788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHH
Q 002431 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358 (922)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 358 (922)
++...|++++|..+++++++.+|++...+..++......|++++|...|+++++.+|+ ...+..+|.++.+.|++++|+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999998888877777777889999999999999999996 899999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 439 FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 439 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+..+............++..+.+.+.....+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999988888888888888888777766554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=3.1e-29 Score=297.16 Aligned_cols=402 Identities=18% Similarity=0.115 Sum_probs=349.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
...++...|++++|++.+.++...+|....++..+|.++...|++++|+..++++++.+|.++.++..++.++...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34567889999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|+..++++++..|++.. +..++.++...|++++|+..++++++..|++..++..++.++...+..++|+..++++..
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999987775
Q ss_pred CCCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHcCChHHHHH
Q 002431 165 QPTFAI-----AWSNLAGLFM-----ESGDL---NRALQYYKEAVKLKPTFPDA-------YLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 165 ~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~ 224 (922)
.|+... ....+..+.. ..+++ ++|++.++++++..|.++.. .......+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 544211 1122222222 22334 78999999998764444322 2221234467799999999
Q ss_pred HHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 225 CYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 225 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
.|+++++..+. ..+...++.++...|++++|+..|++++..+|.. ......++.++...|++++|+..++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 99999987643 2344446999999999999999999999887765 45677788889999999999999999998
Q ss_pred hCCCC---------------hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 299 LQPSH---------------PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 299 ~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
..|.. ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|++.+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 87632 346788999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
+++++|++..+++.+|.++...|++++|...++++++..|+++.+
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999998844
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=3.5e-29 Score=290.18 Aligned_cols=384 Identities=13% Similarity=0.048 Sum_probs=336.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 8 QMYKSGSYKQALEHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
.+.++.+++.---++....+.. ..+.......+..+.+.|++++|+..++.++...|+++.+++.++.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 3455666665544555443322 2345556667788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|+..|+++++.+|+++.++..++.++...|++++|+..++++++.+|++..++..++.++...|++++|+..+++++..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
.|++...+..++ .+...|++++|+..++++++..|. .......++.++...|++++|+..++++++..|+ ...+..+
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 998888877664 478899999999999999888753 3445566688899999999999999999999888 8888999
Q ss_pred HHHHHHcCChHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 243 ASTYYERGQADM----AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 243 ~~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
+.++...|++++ |+..+++++..+|++..++..+|.++...|++++|+..++++++.+|+++.++..++.++.+.|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 398 (922)
++++|+..|++++...|++...+..++.++...|++++|+..|+++++.+|++. ...+++|+..|.++
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~ 400 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQ 400 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHH
Confidence 999999999999999999887777789999999999999999999999999875 34556788888877
Q ss_pred HhhCCC
Q 002431 399 ITIRPT 404 (922)
Q Consensus 399 l~~~p~ 404 (922)
++..+.
T Consensus 401 ~~~~~~ 406 (656)
T PRK15174 401 ISAVNL 406 (656)
T ss_pred HHhcCC
Confidence 776544
No 20
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-28 Score=285.24 Aligned_cols=456 Identities=13% Similarity=0.093 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
...+..+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|..+|+.+.. | +..+|..+...
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence 34444455556677888888888888776553 2344455566667777888888887777654 4 36677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcCCHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 188 (922)
+.+.|++++|.++++++.+.. ..+...+..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 888888888888888877765 34567777888888888888888888888776542 3567778888888888888888
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCChhHHHhHHHHHHHcCChHHHHHHHHHHH
Q 002431 189 LQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----TRPNAIAFGNLASTYYERGQADMAILYYKQAI 263 (922)
Q Consensus 189 ~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 263 (922)
.++|+++.+.. ..+..+|..+...+.+.|++++|.++++++.. ..|+..+|..+...|.+.|++++|.++|+++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888876543 22356778888888888888888888888764 35677778888888888888888888888877
Q ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchh
Q 002431 264 GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAP 340 (922)
Q Consensus 264 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 340 (922)
+.+ +.+..+|..+...|.+.|++++|.++|+++.+.. ..+..++..+...|.+.|++++|.++++++.+.. +.+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 554 3345577888888888888888888888877653 2245677778888888888888888888877664 446677
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHh
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKD 418 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 418 (922)
|+.++..|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.+.. ..+..+|..+...+.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888776542 2356677888888888888888888888776653 2345677777788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh------------------HHHHHHHHHHHHHhccCCCC
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD------------------RMFSEVEGIIRRQVNMSVLP 480 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~------------------~~~~~~~~~~~~~~~~~~~p 480 (922)
.|++++|.++++++.+.+..+....++.+..+ |.+.++++. ....++..++++|+..|+.|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 88888888888888877666555444443322 112222221 22356888999999999999
Q ss_pred CCCCcccccCCC
Q 002431 481 SVQPFHAIAYPI 492 (922)
Q Consensus 481 ~~~~~~~l~~~~ 492 (922)
+..+|..++..+
T Consensus 846 d~~T~~~vL~cl 857 (1060)
T PLN03218 846 TMEVLSQVLGCL 857 (1060)
T ss_pred CHHHHHHHHHHh
Confidence 999998887433
No 21
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=1.1e-26 Score=275.79 Aligned_cols=478 Identities=11% Similarity=0.057 Sum_probs=394.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|..+++.+.. .+...|..+...+.+.|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCc
Confidence 445567789999999999999987663 3344455566778899999999999988765 46788999999999999
Q ss_pred CHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++++|.++|+++.+... .+..+|..+...|.+.|+.++|.++|+++.+.+. .+..+|..+...|.+.|++++|.+.|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999988653 3578999999999999999999999999998763 478899999999999999999999999
Q ss_pred HHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002431 160 EALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR- 233 (922)
Q Consensus 160 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 233 (922)
++.+.. ..+..+|..+...|.+.|++++|.++++++... .| +..+|..+...|.+.|++++|.++|+++.+..
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 997753 345788999999999999999999999999763 34 36789999999999999999999999998864
Q ss_pred -CChhHHHhHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHh
Q 002431 234 -PNAIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTN 309 (922)
Q Consensus 234 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 309 (922)
|+...|..+...|.+.|++++|.++|+++... .|+ ..+|..+...+.+.|++++|.++++++.+.. +.+..++..
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56889999999999999999999999999854 566 4589999999999999999999999999875 456789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCC
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGR 387 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 387 (922)
+...|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|+++|+++.+.. ..+...+..+...+.+.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999987653 4467889999999999999999999999998753 3566788888899999999
Q ss_pred HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH----hc-------------------CCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 388 VTDAIQDYIRAITIRP-TMAEAHANLASAYK----DS-------------------GHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 388 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+++|.+++.++.+... .+..++..+..++. +. +..++|..+|+++++.+-.+....
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999998642 23445554443322 11 234679999999999876644444
Q ss_pred -HHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCC
Q 002431 444 -CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPID 493 (922)
Q Consensus 444 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 493 (922)
..++.++...+. +..+..++..|...+..|+..+|+.++.+++
T Consensus 850 ~~~vL~cl~~~~~-------~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 850 LSQVLGCLQLPHD-------ATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHHHHHhccccc-------HHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 444433323233 3344555566666778888888988888764
No 22
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=4.2e-28 Score=287.23 Aligned_cols=454 Identities=13% Similarity=0.068 Sum_probs=387.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEK 80 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 80 (922)
.....+.+.|++++|+++|+.+....+ .+...+..+..++.+.++++.|..++..+.+..- .+...+..+...|.+.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 455678889999999999999886543 4678888999999999999999999999887542 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
|++++|.++|+++.+ | +..+|+.+...|.+.|++++|+++|+++.+.+. .+..++..+...+...|..+.+.+++.
T Consensus 172 g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 172 GMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999864 3 467899999999999999999999999988753 355677888888889999999999888
Q ss_pred HHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCh
Q 002431 160 EALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ--TRPNA 236 (922)
Q Consensus 160 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 236 (922)
.+.+.. ..+..++..+...|.+.|++++|.++|+++. +.+..+|+.+...|.+.|+.++|+++|+++.+ ..|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 877753 4466788899999999999999999999874 34678899999999999999999999999976 46778
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
.++..+...+.+.|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|.
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 899999999999999999999999998654 44556889999999999999999999998754 35678999999999
Q ss_pred HcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHhCCHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
+.|+.++|.++|+++.+.. ..+..++..+...+.+.|+.++|.++|+.+.+..+ .+...|..+...|.+.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999988764 45677899999999999999999999999986432 34567888999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+.++++ ...| +..+|..+...+...|+++.|...+++++++.|++...+..++..|...|+|++|.++++++.+
T Consensus 483 ~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 483 AMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 988764 2334 4668999999999999999999999999999999888899999999999999888877776554
No 23
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=5.1e-28 Score=293.74 Aligned_cols=477 Identities=13% Similarity=0.073 Sum_probs=354.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
..+...+.++.|..++..+++..+ .+......+...|.+.|+.+.|...|+++. +.+..+|..+...|.+.|++++
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~ 170 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDE 170 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHH
Confidence 334444555555555555554432 123333444444555555555555555442 1234455555555555555555
Q ss_pred HHHHHHHHHhc--CCC----------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002431 86 AIRYYLVAIEL--RPN----------------------------------FADAWSNLASAYMRKGRLNEAAQCCRQALA 129 (922)
Q Consensus 86 A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 129 (922)
|+.+|+++... .|+ +..++..+...|.+.|++++|..+|+++..
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 55555555432 122 345667778888888888888888888643
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Q 002431 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYL 207 (922)
Q Consensus 130 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 207 (922)
.+...|..+...|.+.|++++|+..|.++.+.. ..+..++..+...+...|+.+.|.+++..+.+.. ..+..++.
T Consensus 251 ---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 ---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred ---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 345678888888888888888888888887652 3345677778888888888888888888887653 33567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCC
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~ 285 (922)
.+...|.+.|++++|.++|+++. .|+..+|+.+...|.+.|++++|+++|+++.. ..|+.. ++..+...+.+.|+
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~ 404 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccch
Confidence 89999999999999999998875 46677889999999999999999999998864 456654 77777788889999
Q ss_pred HHHHHHHHHHHHhhCC-CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Q 002431 286 VDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (922)
Q Consensus 286 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (922)
+++|.++++.+.+... .+..++..+...|.+.|++++|.++|+++.+ .+..+|+.+...|.+.|+.++|+.+|+++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998888753 4567888899999999999999999987653 46678999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 365 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
....+.+..++..+..++.+.|+.+.+.+.+..+++.. ..+..++..|...|.+.|+.++|.+.|+++ +.+...|
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 87666677778888888888999999999888888765 334567788889999999999999999886 5567888
Q ss_pred HHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 002431 444 CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYAS 506 (922)
Q Consensus 444 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (922)
+.++..+...|+.++|..+| ++|...|+.||..+|..++..|++.+.++++.++-+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf-------~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELF-------NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHH-------HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 88999888888876665544 455567899999999999988998888888877644
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-28 Score=245.61 Aligned_cols=398 Identities=20% Similarity=0.233 Sum_probs=220.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+-..|+-+++.|+|++||++|.++++..|+.+..|.+++-||...|++++.++...++++++|+.+.+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999988888888889999999999999999999999999998889999999998
Q ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHH------------------
Q 002431 113 RKGRLNEAAQCCRQALAL-NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR--IQPTFAIA------------------ 171 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~------------------ 171 (922)
..|++++|+.-..-.--. +-.+...-..+-..+.+++ ..-.++-++ ..|.-+.+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-----~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-----MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-----HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 999988887655433211 1112222112222222221 111122221 11111100
Q ss_pred -------HHHHHH----HHHH-cCCHHHHHHHHHHHHhcC----CCC---------HHHHHHHHHHHHHcCChHHHHHHH
Q 002431 172 -------WSNLAG----LFME-SGDLNRALQYYKEAVKLK----PTF---------PDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 172 -------~~~la~----~~~~-~g~~~~A~~~~~~~l~~~----p~~---------~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
.-.+.. ++.. ...|.+|...+.+..... ..+ ..++...|..+.-.|+...|...|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 000000 0000 013334433333332210 000 223444444555555555555555
Q ss_pred HHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 002431 227 QRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ 305 (922)
Q Consensus 227 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (922)
+++++.+|. ...|..++.+|.+.++.++....|.++..++|+++++|+..|.+++-++++++|+.-|+++++++|++.-
T Consensus 350 ~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 350 DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 555555554 2225555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHHHH
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AADGLVNRG 379 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~ 379 (922)
.+..++.+.++++++++++..|+.+.+..|+.++.++..|.++..++++++|++.|++++++.|. ++..+...|
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 55555555555555555555555555555555555555555555555555555555555555554 333333333
Q ss_pred HHHHH-hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 380 NTYKE-IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 380 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
.+..+ .+++..|++.++++++++|....++..||.+..++|+.++|+++|+++..+
T Consensus 510 ~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 510 LLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222 245555555555555555555555555555555555555555555555443
No 25
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=7.9e-27 Score=276.41 Aligned_cols=470 Identities=10% Similarity=0.039 Sum_probs=398.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
..+...+.+.++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.++|+++.+ .+..+|..+...|.+.|
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCc
Confidence 345677888999999999999988754 23688899999999999999999999998854 46778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++++|+++|+++.+.... +..++..+...+...|..+.+.+++..+.+.. ..+..++..+...|.+.|++++|.+.|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876432 46788888999999999999999999888775 4466788999999999999999999998
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCh
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPNA 236 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 236 (922)
++. +.+..+|+.++..|.+.|++++|+++|+++.+.. ..+..++..+...+.+.|++++|.+++..+.+. .|+.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 764 4578899999999999999999999999997753 334678999999999999999999999999886 4568
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYM 315 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 315 (922)
.++..+...|.+.|++++|.+.|+++.+ | +..+|..++..|.+.|+.++|+++|+++.+.. ..+..++..+...+.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999999864 3 45589999999999999999999999998764 345678889999999
Q ss_pred HcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
+.|..++|.++|+.+.+.. ..+...|..++.+|.+.|++++|.++++++- .. .+..+|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999998643 3456689999999999999999999998763 22 456789999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH--hhcccCC--hhhHhHHHHHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP--EATCNLLH--TLQCVCS--WEDRDRMFSEVE 467 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~--~~~~~~~--~~~a~~~~~~~~ 467 (922)
.+++++++.|++...|..++.+|.+.|++++|.++++++.+.+-.-. -.|..+.. .-...|+ ..+....++.+.
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998863211 11111100 0011122 345567788899
Q ss_pred HHHHHHhccCCCCCCC
Q 002431 468 GIIRRQVNMSVLPSVQ 483 (922)
Q Consensus 468 ~~~~~~~~~~~~p~~~ 483 (922)
++..+|.+.|..|+..
T Consensus 596 ~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 596 ELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999999999853
No 26
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.5e-26 Score=280.88 Aligned_cols=452 Identities=13% Similarity=0.081 Sum_probs=325.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 81 (922)
..+...|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|+++|+++.+... .+..++..+...+...|
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 4567788889999999999988753 3557788888889999999999999988876532 24556666666666677
Q ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (922)
+.+.|.+++..+.+.. +.+..++..+...|.+.|++++|.++|+++.. .+...|..+...|.+.|++++|++.|++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777766666542 22455666666777777777777776666532 3445666666667777777777777766
Q ss_pred HHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 161 ALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 161 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
+.+.. ..+...+..+...+.+.|++++|.++++.+.+... .+..++..+...|.+.|++++|.++|+++.+ ++..+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs 457 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVIS 457 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeee
Confidence 65432 12233445555566666666666666666655432 2344555666666666666666666665532 34455
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhc-CCCc----------------------------------HHHHHHHHHHHHHc
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGC-DPRF----------------------------------LEAYNNLGNALKDV 283 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~----------------------------------~~~~~~l~~~~~~~ 283 (922)
|..+...|.+.|+.++|+..|+++... .|+. ...+..+...|.+.
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 666666666666666666666665532 2222 12334556778888
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
|+.++|.+.|+.+ +.+..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 8888888888775 5678889999999999999999999999988764 4467778888889999999999999999
Q ss_pred HHHccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 363 EVLRID--PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 363 ~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.+.. ..+...+..+..++.+.|++++|.+.++++ ...|+ ..+|..|...+...|+.+.|....+++++++|+++
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 998543 244578899999999999999999999886 34554 67888888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 441 EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 441 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
..+..+.+.|...|+|+++.++.+.+.+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999988877666554
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-27 Score=237.34 Aligned_cols=400 Identities=18% Similarity=0.198 Sum_probs=321.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..++++|+|++||++|.++++..|+.+.-+..++-||...|+|++.++...++++++|+...+++..+.++...|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 46888999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH-----------------HHHHhCC-------CC-HHH
Q 002431 84 DLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCR-----------------QALALNP-------LL-VDA 137 (922)
Q Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------~~l~~~p-------~~-~~~ 137 (922)
++|+....-..-.. -++...-..+-..+-+++. .++.+-+. ....-+| .+ .++
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 99987765433221 1112111111122222111 11111111 1111111 00 111
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhC----CCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 138 HSNLGNLMKAQ---GLVQEAYSCYLEALRIQ----PTF---------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 138 ~~~la~~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (922)
...-+.-.... ..|.+|...+.+..... ..+ ..++...|..++-.|+...|.+.|+++++++|.
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 11111111111 24666666665544321 111 456677788888899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280 (922)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 280 (922)
+...|..++.+|....+.++..+.|.++..++|. +.+|+..|++++-.+++++|+.-|++++.++|++...+..++.++
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC------CchhhhhHHHHHH-HcCC
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------LSAPFNNLAVIYK-QQGN 353 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~-~~g~ 353 (922)
.++++++++...|+.+++..|+.++.+...+.++..++++++|.+.|++++.+.|. ++..+..-|.+.. -.++
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 99999999999999999999999999999999999999999999999999999998 5555555444433 4689
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+.+|+++++++++++|....++..+|.+..++|+.++|+++|+++..+..+
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987544
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=1.3e-25 Score=259.57 Aligned_cols=441 Identities=14% Similarity=0.024 Sum_probs=335.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+..+...+++|+++.|+..|+++++.+|.++.....++.++...|+.++|+..+++++...|........+|.++...|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 35678888899999999999999999888886444477888888899999999999988444445555555677888999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999988888888888889999999999999998888875554 55666666677777799999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHc---------C---ChHHHHHHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL--NLGNVYKAL---------G---MPQEAIMCYQ 227 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~l~~~~~~~---------g---~~~~A~~~~~ 227 (922)
++.+|++..++..+..++...|-...|.+...+--.........+. ..+.-..+. . -.+.|+..++
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 9999999998888888888888888888776653322211111111 111111111 1 2345666666
Q ss_pred HHHh---hCCC-----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 228 RAVQ---TRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 228 ~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
+++. ..|. ..+..-...++...+++.++++.|+.+.... +-...+....|..|...++.++|+.+|++++.
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 6666 3343 2233455566777888999999888887443 33344677788888899999999999988877
Q ss_pred hCC------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHcCCHHHH
Q 002431 299 LQP------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG---------------LSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 299 ~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~~~~A 357 (922)
..+ .+......|...|...+++++|..++++..+..|. .......++.++...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 542 22333567788888889999999999888875441 123455678888888999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
.+.+++++...|.+...+..+|.++...|.+.+|...++.+..++|++..+...++.++..+|++.+|....+++++..|
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 99999998889999999999999999999999999999888888898888888999999999999999999999999999
Q ss_pred CCHHHH
Q 002431 438 DFPEAT 443 (922)
Q Consensus 438 ~~~~~~ 443 (922)
+++.+.
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 887543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.96 E-value=8.1e-25 Score=228.34 Aligned_cols=451 Identities=15% Similarity=0.087 Sum_probs=373.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
....+-+.|+.++.++.+.-|.+.+.|..++. +.-|+.|.+.+.++-+.-|.+...|..-+..-...|+.+...++
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 33444555666666666666666666655443 34466666666666666666666666666666666666665555
Q ss_pred HHHHHhc------------------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 90 YLVAIEL------------------------------------------RPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 90 ~~~al~~------------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..+.+.. ..+....|..-++.+.+.+-++-|..+|..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5554432 1122345666777788888888899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207 (922)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 207 (922)
++..|.....|...+..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999988899988888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
.-..+.....+++.|..+|.++....|....|..-+.....+++.++|+.+++++++..|+....|..+|+++.++++.+
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 98899999999999999999999888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|.+.|...++..|..+..|..++.+-.+.|+...|..+++++.-.+|.+...|......-.+.|+.++|.....++++.
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
.|.+...|..-....-+-++-..++ .|++....++.++...+.++....++++|.++|.++++.+|++.++|..+.
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 9998888877776666666644444 445555677889999999999999999999999999999999999999999
Q ss_pred HhhcccCChhhHhHHHHHHHH
Q 002431 448 HTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 448 ~~~~~~~~~~~a~~~~~~~~~ 468 (922)
......|.-++...++.....
T Consensus 859 kfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 999999987777777766554
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-25 Score=224.68 Aligned_cols=423 Identities=18% Similarity=0.201 Sum_probs=345.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH---HH----------------HHHHHHHHHhc-
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY---DM----------------CIARNEEALRL- 62 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~----------------A~~~~~~al~~- 62 (922)
+.+|..++....++.|.-.++...+ ....+..-.+.+-.|.. ++ .+..+.+-++.
T Consensus 82 y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 82 YLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 5689999999999999988887643 22222222222222211 11 11112222211
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 002431 63 ---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LLVDA 137 (922)
Q Consensus 63 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~ 137 (922)
...++..++..|.++.+.|....|+..|..++...|-+..+|..|+.+.... +........-| .+.-.
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMK 229 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHH
Confidence 2346788899999999999999999999999999999999999888765432 22233332233 33444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
-..++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+.+.+.+|-..+-.-...+++.-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 556778888888999999999988887 8888888899999999999999999999999999998766666666666665
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.+-.+-.-+.+...+++.- +++...+|+.|...++.++|+.+|+++++++|+...+|..+|.-|..+++...|++.|+.
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 5555544455556666654 888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++++|.|..+|+.+|+.|..++...-|+-+|+++.+..|+++..|..||.+|.+.++.++|+++|++++..+..+..++
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
..+|.+|.++++.++|..+|++.++. .|+-..+...|+.-+.+.+++++|..+..+++.-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99999999999999999999999983 455567778899999999999999998888776533
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=1e-24 Score=252.28 Aligned_cols=442 Identities=16% Similarity=0.042 Sum_probs=368.2
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 35688899999999999999999999999999999999996554588899999999999999999999444555556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 186 (922)
+|..+...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 68899999999999999999999999999999999999999999999999999999999986654 55666666678887
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHH--hHHHHHHHc---------C---C
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG--NLASTYYER---------G---Q 251 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~--~l~~~~~~~---------g---~ 251 (922)
+|++.++++++.+|++.+++..+..++...|-...|.+...+--..... ...+. ..+.-..+. + -
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 8999999999999999999999999999999999998777653322211 11111 111111111 1 2
Q ss_pred hHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHH
Q 002431 252 ADMAILYYKQAIG---CDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAA 323 (922)
Q Consensus 252 ~~~A~~~~~~~l~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A 323 (922)
.+.|+..+++++. ..|.. ..+......++...+++.++++.|+.+.... +-...+....|..|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3556777777775 34432 2344566677888999999999999987665 33455788899999999999999
Q ss_pred HHHHHHHHhcCCC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---------------CCHHHHHHHHHHH
Q 002431 324 ASYYKATLAVTTG------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------------LAADGLVNRGNTY 382 (922)
Q Consensus 324 ~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~ 382 (922)
..+|++++...++ .......|...|...+++++|..+++++.+..| +..+....++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 9999999886532 223346788899999999999999999988544 3345778889999
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHH
Q 002431 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
...|++.+|.+.+++.+...|.+..++..+|.++...|.+.+|.+.++.+..++|++..+....+.+....++|.++...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 002431 463 FSEVEGI 469 (922)
Q Consensus 463 ~~~~~~~ 469 (922)
.+.+.+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 8877763
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.7e-26 Score=228.98 Aligned_cols=453 Identities=21% Similarity=0.233 Sum_probs=376.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYER--NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMA 74 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la 74 (922)
++.+|..|..+..+.+|+..|+-+++. .|+....-..+|.+++++.+|.+|+++|+.++..-|.- ...+..+|
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 578899999999999999999988754 47777777889999999999999999999999988862 56778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCHH-HHHHHH
Q 002431 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--P---------LLVD-AHSNLG 142 (922)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p---------~~~~-~~~~la 142 (922)
..+.+.|+|++|+..|+...+..|+.. +-+++..+++..|+-++..+.|.+++..- + ++++ .+..-+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 999999999999999999999999855 55667788899999999999999998752 1 1211 111111
Q ss_pred ---HHHH--HcCCHHHHHHHHHHHHhh-----CCCc--------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 143 ---NLMK--AQGLVQEAYSCYLEALRI-----QPTF--------------------AIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 143 ---~~~~--~~g~~~~A~~~~~~al~~-----~p~~--------------------~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..+. ...+-..|.+....+.++ .|+. ...-.+.+.-+.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1111 111222233333222222 2221 112234566788999999999999
Q ss_pred HHHHhcCCCCH-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 193 KEAVKLKPTFP-DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 193 ~~~l~~~p~~~-~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
+-.-+.+.... .+-.++..+++.+ .++.+|..+...++..+.. ..+..+.|.+.+..|++++|.+.|++++..+..
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 87766554432 2445565555553 4788999999999887665 788889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 348 (922)
..++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|....+..+|++++.++..+-|+++.++..|+.+|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
-+.|+-.+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhcccCC
Q 002431 429 YKQALLLRPDFPEATCNLLHTLQCVCS 455 (922)
Q Consensus 429 ~~~al~~~p~~~~~~~~l~~~~~~~~~ 455 (922)
|+..-...|.+.+.+..++..+...|-
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999888877766553
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-25 Score=228.59 Aligned_cols=439 Identities=20% Similarity=0.231 Sum_probs=370.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
.+.+-...+.+|.-|+-+-+++.... .++.-.+.++++++-.++|..|......- +....+..+.+..+.++.+..++
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999998877 77888899999999999999998887665 56667888999999999999999
Q ss_pred HHHHHHHHHH------HhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002431 84 DLAIRYYLVA------IELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138 (922)
Q Consensus 84 ~~A~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 138 (922)
++|..++... +..+|.+ ....+..|.+|....+.++|...|.+++..++...++.
T Consensus 99 ~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~ 178 (611)
T KOG1173|consen 99 DQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAF 178 (611)
T ss_pred HHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHH
Confidence 9999988732 1111111 12345567888888999999999999999988877766
Q ss_pred HHHHHHHHHcC-----------------CHHHHHHHHHHHHh----------hC--------CCcHHHHHHHHHHHHHcC
Q 002431 139 SNLGNLMKAQG-----------------LVQEAYSCYLEALR----------IQ--------PTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 139 ~~la~~~~~~g-----------------~~~~A~~~~~~al~----------~~--------p~~~~~~~~la~~~~~~g 183 (922)
..+.....-.. ...+-++.+-++.. .. .++.......+..++..+
T Consensus 179 ~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 179 EKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 55543322111 11111111111110 01 234566777888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++.+..++.+..++.+|-+...+-...-++...|+..+-..+-.++++..|+ +..|+.+|..|...|++.+|..+|.++
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999999887766666999999999988888999999999 899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
..++|....+|...|..+...+..++|+.+|..+-++.|....-...+|.-|...++++-|.++|.+++.+.|.++...+
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccC----C---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRID----P---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
.+|.+.+..+.+.+|..+|+.++..- + .-...+.++|.++.+++++++|+..|++++.+.|.++.++..+|.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 99999999999999999999998431 1 2234689999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
|..+|+++.|++.|.+++.+.|++..+..
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 99999999999999999999999865543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=1.5e-23 Score=228.37 Aligned_cols=462 Identities=20% Similarity=0.232 Sum_probs=341.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++..|..++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 156 (922)
++++|+-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... +.-...+..+...++-+.|++
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998311 122334566667777788888
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------
Q 002431 157 CYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------------------------------------- 197 (922)
Q Consensus 157 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------------------------- 197 (922)
.++.++.. +......+..++.++.+...++.|.........
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88777763 222333455666666666666666554443332
Q ss_pred ------------------------cC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHH
Q 002431 198 ------------------------LK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYE 248 (922)
Q Consensus 198 ------------------------~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~ 248 (922)
.+ .+.++.+..++.++...|++.+|+.+|..+....+. ...|..+|.+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 00 122446777888888888888888888888876655 6688888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---------HHHHh----------
Q 002431 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP---------QALTN---------- 309 (922)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~---------- 309 (922)
.|.+++|++.|++++...|++.++...++.++.++|+.++|.+.+.....-++.+. .....
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888888888888888888888888888888777542221110 11111
Q ss_pred --------------------------------------------------------------------------------
Q 002431 310 -------------------------------------------------------------------------------- 309 (922)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (922)
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence
Q ss_pred ----------HHHHHHHcCChhHHHHHHHHHHhc---------------------------------------------C
Q 002431 310 ----------LGNIYMEWNMLPAAASYYKATLAV---------------------------------------------T 334 (922)
Q Consensus 310 ----------la~~~~~~~~~~~A~~~~~~a~~~---------------------------------------------~ 334 (922)
+..++.+.+.+++|..+...++.. +
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 222223333344443333222211 0
Q ss_pred CCCchhhh-----------------------------------hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 335 TGLSAPFN-----------------------------------NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 335 ~~~~~~~~-----------------------------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
+.....|+ ..|..+...+.+.-|+..|-++...+|++|-.-..+|
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 00001111 1223334446678888888888888998888777777
Q ss_pred HHHHHhC----------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--------
Q 002431 380 NTYKEIG----------RVTDAIQDYIRAITIRPT--MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF-------- 439 (922)
Q Consensus 380 ~~~~~~g----------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 439 (922)
..+..+. ..-+++..+.+..++... ..++.+++|++|...|-..-|+.+|+++++..|.+
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 6665431 234566666666665433 67899999999999999999999999999997543
Q ss_pred ----HHHHHHHHHhhcccCChhhHhHHH
Q 002431 440 ----PEATCNLLHTLQCVCSWEDRDRMF 463 (922)
Q Consensus 440 ----~~~~~~l~~~~~~~~~~~~a~~~~ 463 (922)
-.+.+|+...|.+.|+..-|..++
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 256788999999988865554443
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-24 Score=219.55 Aligned_cols=412 Identities=19% Similarity=0.230 Sum_probs=351.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCC-----------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA------LRLEPR----------- 65 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~----------- 65 (922)
+.+|++++-.|+|+.|..++..- +....+....+..+.++.+..++++|..++... +..++.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 57899999999999998887765 445667889999999999999999999998732 111111
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----------------CHHHH
Q 002431 66 --------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-----------------RLNEA 120 (922)
Q Consensus 66 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A 120 (922)
.+...+..|.+|....+.++|...|.+++..++.+.++...+.....-.- ...+-
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 13456778889999999999999999999999888777666554433211 11111
Q ss_pred HHHHHHHHH----------hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 002431 121 AQCCRQALA----------LN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182 (922)
Q Consensus 121 ~~~~~~~l~----------~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 182 (922)
++.+-++.. .+ .++.+.....+..+...+++.+..++.+..++.+|.+...+.....++.+.
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL 291 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh
Confidence 111111110 01 246678888899999999999999999999999999988887777799999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 261 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 261 (922)
|+..+-..+-.++.+..|+.+-.|+..|..|...|++.+|.++|.++..++|. ..+|...|..+...+..++|+..|..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC------
Q 002431 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT------ 335 (922)
Q Consensus 262 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------ 335 (922)
+-+.-|....-...+|.-|...++++.|.+.|.+++.+.|.+|-++..+|.+.+..+.+.+|..+|+.++..-+
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999984321
Q ss_pred -CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 336 -GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 336 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
.....+.+||.++.+.+++++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-++|++..+-..|+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 1334588999999999999999999999999999999999999999999999999999999999999998766555553
Q ss_pred H
Q 002431 415 A 415 (922)
Q Consensus 415 ~ 415 (922)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 3
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-23 Score=210.37 Aligned_cols=417 Identities=15% Similarity=0.121 Sum_probs=328.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----------------CHH---HHHHHHHHHHhc
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG----------------DID---LAIRYYLVAIEL 96 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------------~~~---~A~~~~~~al~~ 96 (922)
.+.++..++..+.++.|.-.++..... ...+..-.+.+..| .+. ..+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 467889999999999998888765431 11111111111111 111 112222222221
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH
Q 002431 97 ----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAI 170 (922)
Q Consensus 97 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 170 (922)
...++..++..|.++.+.|..+.|+..+..++...|-...+|..|+.+.... +........-| .+..
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWM 228 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHH
Confidence 2345667788888888999999999999999888888888888887765432 22222222223 3333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 248 (922)
.-..+..++....+.++++.-.+..... .|.+...-...|.+.....++++|+..|+.+.+.+|- ..-.-...++++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 4455677788888889999888888887 7888888889999999999999999999999999886 4444444555555
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
.++-.+-.-+-+.+..++.-.+++...+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|.++++...|+..|+
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 55544444455556677777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 329 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
++++.+|.+-.+|+.+|+.|.-++-..=|+-+|+++.+..|.++..|..+|.||.++++.++|+++|.+++.....+..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHhhcccCChhhHhHHHH
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALL-------LRPDFPEATCNLLHTLQCVCSWEDRDRMFS 464 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 464 (922)
+..||.+|.++++.++|..+|++.++ ..|+-..+...|+......++|++|.....
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999 345455566667777777777777765443
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-24 Score=220.80 Aligned_cols=430 Identities=22% Similarity=0.259 Sum_probs=279.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..+...+..|+|+.|+.+|.+++..+|.+...+.....+|..+|+|++|++.-.+.++++|..+..|..+|..+.-.|+|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-GLVQEAYSCYLEAL 162 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 162 (922)
++|+..|.+.++.+|++...+..++.++... +.. .+.|. .+..+..+...-... -..+.+.....+.+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~~-~~~~~--------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YAA-DQLFT--------KPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HHh-hhhcc--------CcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999999999988221 111 11110 111111111100000 00111122222222
Q ss_pred hhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHH---------HHHHhcCCC------------CHHHHHHHHHHHH
Q 002431 163 RIQPTFAIAWSN-------LAGLFMESGDLNRALQYY---------KEAVKLKPT------------FPDAYLNLGNVYK 214 (922)
Q Consensus 163 ~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~---------~~~l~~~p~------------~~~~~~~l~~~~~ 214 (922)
..+|.+...+.+ ++.+....-....+.... .+.....|. -..-...+|....
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 222222211111 000000000000000000 000000000 0112345666666
Q ss_pred HcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRVD 287 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~g~~~ 287 (922)
+..++..|++.|..+++++.+...+.+.+.+|+..|.+.+.+....++++...... .+...+|..+.+.++++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 66666666666666666663355556666666666666666666666554332221 22333555666677777
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|+.+|++++...-. ..+..+.+..+++....+...-.+|.-..-...-|..+++.|+|.+|+..|.++++.
T Consensus 316 ~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 777777776654332 445555566677777777666667766666666677778888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|+++..|.+++.||.++|.+..|+...+++++++|+...+|.+-|.++..+.+|++|.+.|+++++.+|++..+...+.
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR 467 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887777776666
Q ss_pred Hhhcc
Q 002431 448 HTLQC 452 (922)
Q Consensus 448 ~~~~~ 452 (922)
.+...
T Consensus 468 rc~~a 472 (539)
T KOG0548|consen 468 RCVEA 472 (539)
T ss_pred HHHHH
Confidence 66554
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3e-25 Score=234.78 Aligned_cols=305 Identities=21% Similarity=0.279 Sum_probs=277.3
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 137 AHSNLGNLMK--AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 137 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
.+..+|..+. .+-+..+|+..|++.-...++...+...+|..|+++++|++|..+|+.+-+..|-..+..-....+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444454444 34567899999999777778888899999999999999999999999999998876665555666666
Q ss_pred HcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
...+.-+--.+.+.+++.+|+ +++|..+|.+|.-+++.+.|++.|++++.++|....+|..+|.-+....+++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 666655555566677788888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
..+..|.++..++++++|+..+++..++.|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=1.4e-21 Score=204.46 Aligned_cols=439 Identities=15% Similarity=0.089 Sum_probs=402.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE------------------- 63 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 63 (922)
+.+-..|.+..-|+.|.+.++++-+.-|.+..+|..-+..-...|+.+...++..+.+..-
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999999999999888888877765321
Q ss_pred -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 64 -----------------------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 64 -----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 120 (922)
.+.-..|..-+..+.+.+.++-|+.+|..+++.+|.....|...+..-..-|..++-
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 012345667777888888999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
..++++++...|.....|...+..+...|+...|..++.++++.+|++...|.....+.....+++.|..+|.++....|
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 279 (922)
. ..+|+.-+.+...+++.++|+++++++++..|+ ...|..+|+++.+.++.+.|.+.|..-++..|.....|..++.+
T Consensus 650 T-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 T-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred c-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 6 678888999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHH
Q 002431 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359 (922)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 359 (922)
-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|.....++++..|++...|..-+.+.-.-++-..++.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777766666555555
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 360 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.++ ....++.++...|..+....++++|.+.|+++++.+|++.++|..+-..+...|.-++-.++|.+.....|.+
T Consensus 809 ALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 809 ALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 444 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 002431 440 PEATCNL 446 (922)
Q Consensus 440 ~~~~~~l 446 (922)
...|...
T Consensus 885 G~~W~av 891 (913)
T KOG0495|consen 885 GELWQAV 891 (913)
T ss_pred CcHHHHH
Confidence 8887654
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4e-23 Score=229.33 Aligned_cols=300 Identities=19% Similarity=0.170 Sum_probs=236.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNL 107 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 107 (922)
.....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344566677788888888888888888888888888888888888888888888888888887753322 3467788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHc
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMES 182 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~ 182 (922)
|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..++..+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888887888888888888888888888888888887766542 2456778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYK 260 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 260 (922)
|++++|+..++++++..|++..++..++.++...|++++|++.++++.+..|+ ...+..++.+|...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887776 4567788888888888888888888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH--cCChhHHHHHHHHHHh
Q 002431 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME--WNMLPAAASYYKATLA 332 (922)
Q Consensus 261 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~ 332 (922)
++++..|+.. .+..++.++.+.|++++|...++++++..|++......+...+.. .|+..+++..++++++
T Consensus 274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888888765 447888888888888888888888888888876554444433322 4577788777776664
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=209.37 Aligned_cols=460 Identities=19% Similarity=0.208 Sum_probs=372.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhh------------CCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcH
Q 002431 8 QMYKSGSYKQALEHSNSVYER------------NPL------RTDNLLLLGAIYYQLHDYDMCIARNEEALRL--EPRFA 67 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 67 (922)
..-..|++.+|+.-.+.+-.. -|. ...+++.++.-|....-+.+|+..|+-.++. .|+..
T Consensus 158 ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag 237 (840)
T KOG2003|consen 158 IANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAG 237 (840)
T ss_pred HHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCc
Confidence 344567888887766543211 111 2456788999999889999999999988754 56777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 142 (922)
..-..+|.+++++.+|.+|+++|+.++..-|. ....+.++|..+.+.|+|+.|+..|+.+.+..|+.. +-+++.
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~ 316 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLI 316 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhh
Confidence 77888999999999999999999999998776 245677888899999999999999999999998654 455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------------CCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhc-----CC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRI--------------QPTFAIAWSNLAGL-F--MESGDLNRALQYYKEAVKL-----KP 200 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~l~~-----~p 200 (922)
.+++..|+-++..+.|.+++.+ +|++...-..+-.- + ....+-..|.+....+.++ .|
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 8888999999999999999875 12221111111111 1 1112223333333333221 22
Q ss_pred CC--------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHc--CChHHHH
Q 002431 201 TF--------------------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER--GQADMAI 256 (922)
Q Consensus 201 ~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~--g~~~~A~ 256 (922)
+. .+.-.+.+-.+.+.|+++.|+++++-.-+.+.. ..+-.++..+++.+ .++..|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 21 122345667788999999999998876655443 55666777777664 4788999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002431 257 LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (922)
Q Consensus 257 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 336 (922)
.+...++..+.-++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+...|+.++|+.+|-+.-.+--+
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 337 LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 337 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
+..++..++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.++.-+|+..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 417 KDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
....-+++|+.+|+++--+.|+.......++.++...|+|..+...++....
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998877777777778888998888877776554
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.2e-24 Score=227.08 Aligned_cols=305 Identities=20% Similarity=0.255 Sum_probs=276.4
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 103 AWSNLASAYMR--KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 103 ~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
.+..+|..|.. +-+..+|+..|++.-...++...++..+|..|+.+++|++|..+|+.+-+..|--....-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 44455555543 4567899999999777778888888999999999999999999999999998876666566666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
...+.-+--.+.+..++.+|+.|+.|..+|++|.-+++++.|++.|+++++++|+ ..+|..+|.-+....+++.|...|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 6666555556667788889999999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 339 (922)
++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (922)
..+..|.++...+++++|+..+++..++-|+...+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999987443
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-22 Score=209.69 Aligned_cols=412 Identities=21% Similarity=0.246 Sum_probs=318.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
....|+..+..|+++.|+.+|.+++.++|.+...|.+...+|..+|+|++|++.-.+..+++|.-+..|..+|..+.-.|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKE 194 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 194 (922)
+|++|+..|.+.++.+|++...+..++.++... +. +.+.| ..+..|..+...-... -..+.+.....+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999999999999998887211 11 11111 1122232222211111 112233333333
Q ss_pred HHhcCCCCHHHHH-------HHHHHHHHcCCh-HHHHHHH---------HHHHhhCC-------------ChhHHHhHHH
Q 002431 195 AVKLKPTFPDAYL-------NLGNVYKALGMP-QEAIMCY---------QRAVQTRP-------------NAIAFGNLAS 244 (922)
Q Consensus 195 ~l~~~p~~~~~~~-------~l~~~~~~~g~~-~~A~~~~---------~~~~~~~p-------------~~~~~~~l~~ 244 (922)
.+..+|.+...+. .++.+.. .+.. ..+.... .+..+..| .......+|.
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 3444443322221 1111110 0000 0000000 00000001 1234567899
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------HHHHhHHHHHHHc
Q 002431 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP-------QALTNLGNIYMEW 317 (922)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~ 317 (922)
..++..+++.|++.|.+++.++ .+...+.+.+.++...|.+.+.+....++++..-... .+...+|..|.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999 8887889999999999999999999999888754432 2444567788889
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
++++.|+.+|++++..... ..++.+....++++...+...-.+|.-..--...|..+++.|+|.+|+..|.+
T Consensus 312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998875543 56777888899999999999889998888888889999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 398 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+++.+|+++..|.+.+.||.++|++..|+...+++++++|++..++..-+.++..+.+|+.+...|.+..+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988876653
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.3e-22 Score=225.13 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL----VDAHSNLG 142 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la 142 (922)
....+.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...+.. ...+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44556667788888888888888888888888888888888888888888888888888887753322 24677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALG 217 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g 217 (922)
.++...|++++|...|+++++..|.+..++..++.++...|++++|++.++++++..|.+.. .+..++..+...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888887765432 4567788888888
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
++++|+..|+++++..|+ ...+..++.++...|++++|++.++++++.+|.+ ..++..++.++...|++++|...+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888777 6677888888888888888888888888777765 34677788888888888888888888
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH--cCCHHHHHHHHHHHHc
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ--QGNYADAISCYNEVLR 366 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 366 (922)
+++..|+... +..++.++.+.|++++|...++++++..|++......+...+.. .|+..+|+..++++++
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888886644 47788888888888888888888888888776444333333222 4577888887777765
No 45
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=2.1e-23 Score=224.48 Aligned_cols=327 Identities=12% Similarity=0.077 Sum_probs=201.3
Q ss_pred eeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHH------HHHhccCceEECCCCCHHHHHHHHHhCC
Q 002431 539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLINEDK 612 (922)
Q Consensus 539 ig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 612 (922)
|-.+.-.+.......|+..-++. ++++++.|+--+.+. +.. .++....+--++-..+-..++..|++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~r 280 (578)
T PRK15490 206 VELIIRSLTPELRQDFFLKEVLE---EQVEVLEIAKITGNL--FDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERK 280 (578)
T ss_pred eeEEEeecCcccCcchhHHHHHh---cCCceEEeeccchhh--hhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcC
Confidence 44555555444444455444443 567777776433111 111 1222222222222224578999999999
Q ss_pred CeEEEcCCCcCCCCchhhh---hcCC--CceEEecc-ccCCCCCCCcc----------c--EEEecCccCCcCccC----
Q 002431 613 IQILINLNGYTKGARNEIF---AMQP--APIQVSYM-GFPGTTGASYI----------D--YLVTDEFVSPLRYAH---- 670 (922)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~---~~~~--apvq~~~~-g~~~t~g~~~~----------d--~~~~d~~~~~~~~~~---- 670 (922)
|||+ ||+..+..++ +.+. .|+.++.. |++...+-..+ + +..+| ++..+....
T Consensus 281 pDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~ 354 (578)
T PRK15490 281 LDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYA 354 (578)
T ss_pred CCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHH
Confidence 9999 9987665444 2333 47766642 33322211100 1 22233 333332211
Q ss_pred ----CCccceeecCCccccCCCccccccCCCCCCC-CCcC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCC
Q 002431 671 ----IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 741 (922)
Q Consensus 671 ----~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~--~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p 741 (922)
.-.+++..+|+..-.. ++.+....+ ..|. ..+++++.+++|+++|+ .|++..+++++.++++..|
T Consensus 355 ~~lgip~~KI~VIyNGVD~~------rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~p 428 (578)
T PRK15490 355 DWLKLEAKHFQVVYNGVLPP------STEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHP 428 (578)
T ss_pred HHhCCCHHHEEEEeCCcchh------hcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCC
Confidence 1233444444433211 111111001 1222 34556667788888875 5999999999999999999
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~ 820 (922)
+.+|+|+|+|+. ++.+++.++++|+ .++|+|+|. ..+...+|+.+|||+.||.++| |++++|||+||+|||+...
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL-~d~V~FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGI-LERILFVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCC-CCcEEECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 999999999986 7899999999999 599999998 4567778999999999999999 9999999999999995543
Q ss_pred CcchhhhHHHHHHhcCCCCccccC--CHHHHHH---HHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 821 EKMATRVAGSLCLATGLGEEMIVN--SMKEYEE---RAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 821 ~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~---~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.....-+. -|.++ +++. |.+++.+ .+.++..+.+.+..++++.++.+ ...||.+.++.+++++|..
T Consensus 505 GG~~EiV~------dG~nG-~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V--~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 505 GGSAECFI------EGVSG-FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFL--QERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCcHHHcc------cCCcE-EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHh
Confidence 32222111 14555 4432 3444433 23455555555666778888876 4579999999999999853
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=6.3e-21 Score=208.18 Aligned_cols=436 Identities=18% Similarity=0.202 Sum_probs=340.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...++..|+.++..|++++|..++.++++++|.++.+|+.||.+|.++|+.+++...+-.+-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHcCCHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 187 (922)
++|++++|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998332 223445777888888899
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------h-------CCCh
Q 002431 188 ALQYYKEAVKLK--PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----------------------T-------RPNA 236 (922)
Q Consensus 188 A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~-------~p~~ 236 (922)
|++.++.++... ....+.+..++.++.+...++.|......... . .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999999998833 33445677889999999999999888776655 0 0111
Q ss_pred hH-HHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHhHHHH
Q 002431 237 IA-FGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-HPQALTNLGNI 313 (922)
Q Consensus 237 ~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 313 (922)
.+ ...++.+..+.++..+++..+..--...| +..+.+..++.++...|++.+|+.++..+....+. +..+|+.+|.+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 22 34444445555555555555443322223 45678999999999999999999999999887553 46799999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------HHHHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------ADGLVNRGNTYKE 384 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~ 384 (922)
|...|.+++|+..|++++...|++..+...|+.++.++|+.++|.+.+..+..-++.+ ......+..++..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877444322 2356677788888
Q ss_pred hCCHHHHHHHHHHHHhh-------CCC-----------------------------------------------------
Q 002431 385 IGRVTDAIQDYIRAITI-------RPT----------------------------------------------------- 404 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~-------~p~----------------------------------------------------- 404 (922)
.|+.++=+..-...+.. .|.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 88776644322222110 000
Q ss_pred --cH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHH----HHHHHhhcccCChhhHhHHHHHHHH
Q 002431 405 --MA----EAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEAT----CNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 405 --~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.. +....+..++.+.+++++|..+...+++..- .++... +-.+.+.....+|.++...++.+..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01 2344567788899999999999998888643 233322 2233344455677777666665554
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-21 Score=191.03 Aligned_cols=438 Identities=15% Similarity=0.109 Sum_probs=343.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYER--------------------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 63 (922)
.++...+...+|..|...|..++.. .|.+.+.....+.||...++-+.|+.........
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t- 126 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT- 126 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc-
Confidence 4555666677777777777776542 1234566677888888888888888776654322
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-H--HH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA-H--SN 140 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~--~~ 140 (922)
...+.....++..+-.-++-.++.-.|...+...|--......+...- ..-.+.+-... ..+...|..... . ..
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g~e~~S~~m-~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNGNEINSLVM-HAATVPDHFDWLSKWIKA 203 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcchhhhhhhh-hheecCCCccHHHHHHHH
Confidence 123455556666666666655666666666655543222222111111 11111111111 112233333322 2 23
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 002431 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220 (922)
Q Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 220 (922)
++.++....-+..+..++-......|++...+..++.+++..|++++|+..|++...++|......-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 34444444445555556666667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+-..+...++..... ..-|+.-+...+..+++..|+.+-++++..+|++.+++...|.++...|+.++|.-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 999999998887744 7778888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-VIYK-QQGNYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
.|.+-+.|..+..+|...|++.+|...-..++...|.++.++..+| .++. .-.--++|.+++++.++++|....+-..
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 9999999999999999999999999999999999999999888886 4443 3344689999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
++..+...|++++++..+++.+...|++ ..+..||.++...+.+++|++.|..++.++|++..+...+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999999999999874 5889999999999999999999999999999987765543
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=8.2e-22 Score=190.89 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=184.6
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
++++..++..|++..|+..|-.+++.+|++..+++..|..|+.+|+-.-|+..+.+++++.|+...+....|.++.++|+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFA---DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
+++|...|+++++.+|++. ++...++.+-. ...+......+...|+...|+....
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e----------------------~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE----------------------HWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH----------------------HHHHHHHHHHHhcCCchhhHHHHHH
Confidence 5555555555555555321 11111110000 0012222333344455555555555
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA--- 236 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--- 236 (922)
.+++..|-+...+...+.+|...|+...|+.-++.+-++..++.+.++.+..+++..|+.+.++...+++++.+|+.
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555541
Q ss_pred -hHHHh---------HHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 237 -IAFGN---------LASTYYERGQADMAILYYKQAIGCDPRFLE----AYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 237 -~~~~~---------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
..|.. -+....+.++|.++++..++.++.+|.... ....+..++...+++.+|++.+.++++.+|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 11111 122334567788888888888888887432 3344566777778888888888888888888
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhh
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 341 (922)
+..++...+.+|.....|+.|+.-|+++.+.++++..+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 888888888888888888888888888888888776543
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=7.7e-21 Score=203.98 Aligned_cols=437 Identities=16% Similarity=0.117 Sum_probs=324.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 6 AHQMYKSGSYKQALEHSNSVYER-----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
...+.-..+.++++-..-..+.. -.+++..+-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA 370 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh
Confidence 34455556666666554433321 2356777777788888888888888888888877777778888888888888
Q ss_pred CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC---
Q 002431 81 GDIDLAIRYYLVAIELR--PNFADAWSNLASAY-MRKGRLNEAAQCCRQALALN-----PLLVDAHSNLGNLMKAQG--- 149 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g--- 149 (922)
|.-..|+.+.+...... |+++..+...+..+ .+.+.+++++.+..+++... --.+..+..+|.+|..+-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 88888888888887776 66666555555444 45677888888888887732 123456666666665432
Q ss_pred --------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChH
Q 002431 150 --------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQ 220 (922)
Q Consensus 150 --------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~ 220 (922)
...++++.++++++.+|.|+.+.+.++.-|..+++.+.|.....++++. ..+++..|..++.++...+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 2457788888888888888888888888888888888888888888888 4456678888888888888888
Q ss_pred HHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHcCCHHHHH
Q 002431 221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP---------RFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---------~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
+|+.+.+.+++..++ .........+-...++.++|+..+...+..-. +........+.......+..+|.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 888888888877665 33333444445556777777776666553211 01111222222222233333333
Q ss_pred HHHHHHHhh---------------------CCCC-----hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 291 QCYNQCLSL---------------------QPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 291 ~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
+...++... .|+. ...|...+..+.+.++.++|..++.++..+.|.....|+..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 333333221 1111 24677888999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHhcCCH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAITIRPTMAEAHANLASAYKDSGHV 422 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~ 422 (922)
|.++...|+.++|.+.|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++.+|.+.++|+.+|.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999999888888 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHH
Q 002431 423 EAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 423 ~~A~~~~~~al~~~p~~~~~ 442 (922)
++|.++|..++++.+.+|.-
T Consensus 771 ~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 771 KQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHhhccCCCcc
Confidence 99999999999999887743
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=6e-21 Score=184.96 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+.+-.+.+|..++..|++..|+..|..+++.+|++..+++..|..|...|+-..|+..+.+++++.|+...+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
+++|++++|..-|+.+++.+|++....-....+.. .++ ...+......+...|+...|++.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~----~~e---------------~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL----IQE---------------HWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh----HHH---------------HHHHHHHHHHHhcCCchhhHHHH
Confidence 55555555555555555554433211110000000 000 01112223344556777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
...++++.|-+...+...+.+|...|+...|+.-++.+.++..+ .+.++.++.+++..|+.+.++...+++++++|+.-
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 77777777777777777777777777777777777777776555 67777777777777777777777777777777755
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh----hhhHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP----FNNLAV 346 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la~ 346 (922)
..+-. |.+..+..+.++.. .-..+.++|.++++..++.++.+|..+.+ +..+..
T Consensus 258 ~Cf~~----YKklkKv~K~les~------------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 258 LCFPF----YKKLKKVVKSLESA------------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHH----HHHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 33321 11112222222222 22334567778888888888888774433 445677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
|+...+++.+|+....++++.+|++.+++...+.+|..-..|++|+..|+++.+.++++..+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999998887654443
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.89 E-value=3.7e-19 Score=187.41 Aligned_cols=470 Identities=16% Similarity=0.134 Sum_probs=352.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..+...+..++|.+.++..+++++..|.+.+.+...|..+...|+-++|......++..++.+..+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+|++|+++|+.|+..+|+|...|..++....+.++++-....-.+.++..|..-..|...+..+.-.|++..|....+..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhhC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 162 LRIQ---PTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 162 l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
.+.. |+. .........+..+.|.+++|.+.+..--..--+........+.++.+.+++++|...|...+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 7654 332 23344556677788888888888776544433444566778899999999999999999999999
Q ss_pred CCh-hHHHhHHHHHHHcCChHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCChHHHHhH
Q 002431 234 PNA-IAFGNLASTYYERGQADMAI-LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEA-IQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 234 p~~-~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~l 310 (922)
|+. ..+..+-.++..-.+--+++ ..|...-+..|... .-..++.....-.++.+. -+++...++.+ -+.+...+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhh
Confidence 994 44444444554333444444 55555544444432 333333333322233222 22333333331 12223333
Q ss_pred HHHHHHcCC---hhHHHHHHHHHHhcC------------CCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 311 GNIYMEWNM---LPAAASYYKATLAVT------------TGLSA--PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 311 a~~~~~~~~---~~~A~~~~~~a~~~~------------~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
-.+|..-.. .++-...|...+.-. |..+. .++.++.-+...|+++.|..+++.++...|..++
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 333322111 111111122222111 22222 3456788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHH-
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE-------ATCN- 445 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~- 445 (922)
.+...|.++...|++++|..++..+.+++-.|..+...-|....+.++.++|.+...+.-..+-+-.. .|+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 99999999999999999999999999999887777778899999999999999998887665531110 1111
Q ss_pred -HHHhhcccCChhhHhHHHHHHHHHHHHHh
Q 002431 446 -LLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (922)
Q Consensus 446 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 474 (922)
-+.++..+++|..|.+.|..+...+.+-.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIEKHYKTWS 516 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 13346667778888888888877766644
No 52
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.89 E-value=5.6e-22 Score=218.75 Aligned_cols=341 Identities=14% Similarity=0.131 Sum_probs=224.7
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C----HHHHHHHHH
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S----SDMIAKLIN 609 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~ 609 (922)
+.+|.++.+.+..+++..++..+.+.+++.++++++++.... +.+.+.+......++.+... . ...+.+.++
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 78 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEV--SAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLR 78 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCC--ChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHH
Confidence 367999999999888999999999999998898877765332 23566666666555555421 1 356788899
Q ss_pred hCCCeEEEcCCCcCCCCch---hhhhc-CCCceEE-eccccCCCC-CCCcc--------cEEEecCccCCcCccCCCccc
Q 002431 610 EDKIQILINLNGYTKGARN---EIFAM-QPAPIQV-SYMGFPGTT-GASYI--------DYLVTDEFVSPLRYAHIYSEK 675 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~---~~~~~-~~apvq~-~~~g~~~t~-g~~~~--------d~~~~d~~~~~~~~~~~~~e~ 675 (922)
+.++||+ |+|+... .+++. ..-|+.+ +..|+...+ ....+ -...+|.+++.+.....+..+
T Consensus 79 ~~~~Div-----h~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~ 153 (374)
T TIGR03088 79 QLRPDIV-----HTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRG 153 (374)
T ss_pred HhCCCEE-----EEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHH
Confidence 9999999 7764321 11121 1224322 222221100 00000 011345555444432111111
Q ss_pred eeecCCc--cccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCC----CeEEE
Q 002431 676 LVHVPHC--YFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP----NSALW 746 (922)
Q Consensus 676 ~~~lp~~--~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~ 746 (922)
...+|.. .+.+++.+...+.+.+ .....+.....+++.+++++++|+ .|+.+.+++++.+++++.| +.+|+
T Consensus 154 ~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~ 233 (374)
T TIGR03088 154 PVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLV 233 (374)
T ss_pred hcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEE
Confidence 1112211 1122221111111111 011122334456677888888876 4999999999999998876 68999
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchh
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMAT 825 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~ 825 (922)
++|+|+. .+.+++.+++.|+ .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||+||+|||+.+......
T Consensus 234 i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e 309 (374)
T TIGR03088 234 IVGDGPA-RGACEQMVRAAGL-AHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPE 309 (374)
T ss_pred EecCCch-HHHHHHHHHHcCC-cceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHH
Confidence 9999876 7889999999999 589999995 5677888999999999998899 999999999999999654332222
Q ss_pred hhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
-+. -|..+ ++. .|++++++.+.++.+|++.+..++++.++.. ...||++.+++++++.|+++
T Consensus 310 ~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 310 LVQ------HGVTG-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARA--EQQFSINAMVAAYAGLYDQL 373 (374)
T ss_pred Hhc------CCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Confidence 111 13334 333 5899999999999999999999999988876 34699999999999999875
No 53
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.88 E-value=4.6e-22 Score=218.71 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=145.8
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 712 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
+.+++++++|+ .|+.+.+++++..+.++.|+.+|+|+|+|+. ++.+++.++++|+ .++|.|+|.++..+...+|+.
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-~~~l~~~~~~~~l-~~~V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-ERRLRTLIEQYQL-EDVVEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-HHHHHHHHHHcCC-CCeEEEeCCCCHHHHHHHHHh
Confidence 34667777776 4999999999999988889999999999987 8899999999999 599999999999999999999
Q ss_pred CcEEecCCC------CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc-C
Q 002431 790 ADLFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL-D 859 (922)
Q Consensus 790 ~dv~l~~~~------~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~-d 859 (922)
+|+|+.|+. ++| |++++|||+||+|||+.......+-+. -|.++ +++ .|++++++++.++.+ |
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~------~~~~G-~lv~~~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVE------ADKSG-WLVPENDAQALAQRLAAFSQLD 371 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhc------CCCce-EEeCCCCHHHHHHHHHHHHhCC
Confidence 999999985 377 999999999999999654332222211 14444 343 589999999999999 9
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 860 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++.+.+++++.|+.. ...|+++.+++++++.|++
T Consensus 372 ~~~~~~~~~~ar~~v--~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 372 TDELAPVVKRAREKV--ETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhh
Confidence 999999999999887 4469999999999999975
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.5e-17 Score=165.63 Aligned_cols=443 Identities=16% Similarity=0.146 Sum_probs=369.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
-|+--..++++..|.++|++++..+..+...|...+.+-++.+....|..++++++..-|.-...|+....+-...|+..
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 34455678889999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
.|.++|++-++..|+ ..+|......-.+.++.+.|..+|++.+-.+| ....|...+..-.+.|+..-|...|+++++.
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999999999998 77999999999999999999999999998886 5678899999999999999999999999987
Q ss_pred CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChH---HHH-----HHHHHHHh
Q 002431 165 QPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQ---EAI-----MCYQRAVQ 231 (922)
Q Consensus 165 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~---~A~-----~~~~~~~~ 231 (922)
..++ ...+...+..-..+..++.|.-+|+-++..-|.+ ...+..+...-.+-|+.. +++ --|++.++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 5544 3345566666777888999999999999988887 445555554445556543 333 23667777
Q ss_pred hCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHhhC
Q 002431 232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE-------AYNNLGNAL---KDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 232 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~---~~~g~~~~A~~~~~~al~~~ 300 (922)
.+|. -.+|.....+....|+.+.-.+.|++++...|...+ .|..+-.++ ....+.+.+.++|+.++++-
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 8886 888999999999999999999999999977665332 122222222 45689999999999999998
Q ss_pred CCC----hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 002431 301 PSH----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376 (922)
Q Consensus 301 p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 376 (922)
|.. +.+|...+....++.+...|.+.+-.++-..|.+. .+...+.+-.+.++++...++|++.++..|.+..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 864 56788888889999999999999999999998754 4566777788999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
..|..-..+|+.+.|..+|+-|++...-+ ...|......-...|.+++|..+|++.++..+... +|..++..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999999999999999999875332 23566777778889999999999999999988776 6666655444
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.4e-19 Score=189.35 Aligned_cols=405 Identities=19% Similarity=0.152 Sum_probs=339.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLG 142 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la 142 (922)
+++..|-.+.......|+++.+.+.|++++...-...+.|+.++.+|...|.-..|+.+.++..... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677888889999999999999999999998877788999999999999999999999999999888 77777766666
Q ss_pred HHH-HHcCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHH
Q 002431 143 NLM-KAQGLVQEAYSCYLEALRIQ-----PTFAIAWSNLAGLFMES-----------GDLNRALQYYKEAVKLKPTFPDA 205 (922)
Q Consensus 143 ~~~-~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~ 205 (922)
.++ ...+..++++.+..+++... --.+..+..+|.+|..+ ....++++.++++++.+|.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 554 56788999999999999842 22355677777776543 23568899999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 283 (922)
.+.++.-|...++.+.|.....++++.++. ...|..++.++...+++.+|+...+.++...|++.........+-...
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 999999999999999999999999999665 889999999999999999999999999999888877777777777888
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHh---------HHHHHHHcCChhHHHHHHHHHHhc--------C-----------C
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTN---------LGNIYMEWNMLPAAASYYKATLAV--------T-----------T 335 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~---------la~~~~~~~~~~~A~~~~~~a~~~--------~-----------~ 335 (922)
++.++|+..+...+..-...+.+-.. .+.+.....+..+|.+..+++... . |
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 99999999988887764322222111 122222233445555544443322 0 1
Q ss_pred CC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 336 GL-------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 336 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
.. ...|...+..+.+.++.++|..++.++-++.|..+..++..|.++...|+.++|.+.|..++.++|+++.+
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 11 13466788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 409 HANLASAYKDSGHVEAAIK--SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
...+|.++.+.|+..-|.. .+..+++++|.++++|+.+...+...|+.++|...|+.+.++
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999998777777 999999999999999999999999999999999999888774
No 56
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.87 E-value=6.1e-19 Score=193.21 Aligned_cols=462 Identities=15% Similarity=0.181 Sum_probs=370.7
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (922)
++...|...|-++++.++.-..++..+|.+|....+...|.+.|+++.++++.+..+.-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 93 AIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 93 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
+-+..|. ....|..+|-.|.+.++...|+..|+.+++.+|++...|..+|.+|...|++..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 6666654 23456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------C
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---------P 234 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p 234 (922)
..+..+.+.+..|+|.+|+..+...+...... .+.+...+..+...|-..+|...+++.++.. .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999887754333 3455555666666676777777777666521 1
Q ss_pred ChhHHHhHHHHHHH---cC--------------------Ch---H---HHHHHHHHHHhcCCCcHHHHHHHHHHHHH---
Q 002431 235 NAIAFGNLASTYYE---RG--------------------QA---D---MAILYYKQAIGCDPRFLEAYNNLGNALKD--- 282 (922)
Q Consensus 235 ~~~~~~~l~~~~~~---~g--------------------~~---~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--- 282 (922)
+...|..++..+.- .. .. + -+.+++-..++.-.. ...|+++|..|..
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFL 790 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHH
Confidence 12223323222211 11 00 1 122222222221111 3468888877765
Q ss_pred -----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 283 -----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 283 -----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
+.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.....|.+...|.++|.++.+..+++.|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 2344589999999999999999999999988 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHhcCCHHHHHH-----
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-----MAEAHANLASAYKDSGHVEAAIK----- 427 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~----- 427 (922)
...|.++..++|.+...|...+.+....|+.-++...|....++... ....|..-......+|++++-+.
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 99999999999999999999999999999999999999985554322 12344444555666777666554
Q ss_pred -----HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhcc
Q 002431 428 -----SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNM 476 (922)
Q Consensus 428 -----~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 476 (922)
..++.+...|++..++...+......+.+.++.....++..+++.-...
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667789999999888888888888888888888888888776544
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-18 Score=172.60 Aligned_cols=405 Identities=15% Similarity=0.086 Sum_probs=315.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...+.++-..++-+.|+..+.++.... ..+.....++..+-.-++-.++.-.+...+...|--......+...- -+-
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g 177 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNG 177 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcc
Confidence 356788888899999998887765432 23455555666665555555666666666666553222222111111 111
Q ss_pred HHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAW---SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
++.+- .-..++...|..+..| ..++.++.-...+.-+..++-.-...-|++...+..+|.++...|++++|+..|+
T Consensus 178 ~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 178 NEINS-LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred hhhhh-hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 11111 1112233445544433 2334444444445555556666666778999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002431 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238 (922)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 238 (922)
++.-.+|.+....-..|.++...|++++-..+....+........-|+--+..++..+++..|+.+-+++++.+|+ ..+
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a 336 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA 336 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence 9999999999999999999999999999888888888877666777888888888899999999999999999888 888
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHH-HHHH-H
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG-NIYM-E 316 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~ 316 (922)
+...|..+...++.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+++..|.+..++..+| .++. .
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888886 4433 3
Q ss_pred cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
-.--++|.+++++.+.+.|....+-..++.++...|.+++++.++++.+...|+ ...+..+|.++...+.+.+|++.|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344678999999999999999999999999999999999999999999988765 4678899999999999999999999
Q ss_pred HHHhhCCCcHHHHHHH
Q 002431 397 RAITIRPTMAEAHANL 412 (922)
Q Consensus 397 ~al~~~p~~~~~~~~l 412 (922)
.|+.++|++..+...+
T Consensus 496 ~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhcCccchHHHHHH
Confidence 9999999987655444
No 58
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.87 E-value=4.4e-21 Score=212.54 Aligned_cols=329 Identities=11% Similarity=0.083 Sum_probs=215.3
Q ss_pred eeeeecCCCCCC--hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C-----------CCHH
Q 002431 538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A-----------MSSD 602 (922)
Q Consensus 538 rig~~s~~~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~ 602 (922)
||.+++..+..+ ++.+++..+.+.+.+.++||++++....... ..........++.++ . ....
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRV--GIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCC--CcccccCceeEEEecceeccCCccccchhhhHH
Confidence 466777665443 3457888999999888999999986422111 001111111111111 0 1124
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchh-----hhhc--CCCceEEeccccCCCCCC-----C-ccc--EEEecCccCCcC
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNE-----IFAM--QPAPIQVSYMGFPGTTGA-----S-YID--YLVTDEFVSPLR 667 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~-----~~~~--~~apvq~~~~g~~~t~g~-----~-~~d--~~~~d~~~~~~~ 667 (922)
.+.+.+...++||+ |+|+.... ++.. ...|+..+..+....... . .+. +..+|.+++++.
T Consensus 79 ~l~~~~~~~~~DiI-----h~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 79 LLRNILIRERITIV-----HGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSH 153 (398)
T ss_pred HHHHHHHhcCCCEE-----EECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecH
Confidence 56777888899999 77654321 1222 335777765442111100 0 011 123455554443
Q ss_pred ccC--------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002431 668 YAH--------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (922)
Q Consensus 668 ~~~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il 737 (922)
... ...+++..+|++. +... +.+.... .+++.++++.++|+ .|+.+.+++++..+.
T Consensus 154 ~~~~~~~~~~~~~~~k~~vi~ngv------d~~~--f~~~~~~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~ 219 (398)
T cd03796 154 TSKENTVLRASLDPERVSVIPNAV------DSSD--FTPDPSK------RDNDKITIVVISRLVYRKGIDLLVGIIPEIC 219 (398)
T ss_pred hHhhHHHHHhCCChhhEEEEcCcc------CHHH--cCCCccc------CCCCceEEEEEeccchhcCHHHHHHHHHHHH
Confidence 311 1123344444332 1111 1111111 23466788888876 599999999999998
Q ss_pred hhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCee
Q 002431 738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI 816 (922)
Q Consensus 738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv 816 (922)
+..|+.+|+++|+|+. .+.+++.+.+.|+ .++|.|.|.++.++...+|+.+|++|.|+.++| |++++|||+||+|||
T Consensus 220 ~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI 297 (398)
T cd03796 220 KKHPNVRFIIGGDGPK-RILLEEMREKYNL-QDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVV 297 (398)
T ss_pred hhCCCEEEEEEeCCch-HHHHHHHHHHhCC-CCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEE
Confidence 8999999999999876 7889999999999 489999999999999999999999999998888 999999999999999
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
+.+......-+. . |-.- ++..|.+++++++.++..+......++++.++.. ...||++.+++++.+.|+++
T Consensus 298 ~s~~gg~~e~i~-----~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 298 STRVGGIPEVLP-----P-DMIL-LAEPDVESIVRKLEEAISILRTGKHDPWSFHNRV--KKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred ECCCCCchhhee-----C-Ccee-ecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHH--HhhCCHHHHHHHHHHHHHHH
Confidence 655433333222 1 1111 4456889999999999988776666677777665 44699999999999999987
Q ss_pred HH
Q 002431 897 WS 898 (922)
Q Consensus 897 ~~ 898 (922)
..
T Consensus 369 ~~ 370 (398)
T cd03796 369 LQ 370 (398)
T ss_pred hc
Confidence 64
No 59
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.87 E-value=8.9e-21 Score=208.50 Aligned_cols=338 Identities=14% Similarity=0.145 Sum_probs=218.6
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHH--HHHHh-ccCceEECCCCCHHHH----HHH---
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWR--QRTQS-EAEHFVDVSAMSSDMI----AKL--- 607 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~----~~~--- 607 (922)
||.++++.+..+++.+++..+.+.+++.++|+.++...+.++. +. +.+.. .......++....... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF-FNVTKKFHNALQGADIELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH-HHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 6899999998999999999999999999999999887654322 11 22222 1111112221111111 112
Q ss_pred -HHhCCCeEEEcCCCcCCCCc---hhhhhcC-CCceEEeccccCCCCCCCcc-cE-----EEecCccCCc-Cc-cCCCcc
Q 002431 608 -INEDKIQILINLNGYTKGAR---NEIFAMQ-PAPIQVSYMGFPGTTGASYI-DY-----LVTDEFVSPL-RY-AHIYSE 674 (922)
Q Consensus 608 -i~~~~~dil~~~~~~~~~~~---~~~~~~~-~apvq~~~~g~~~t~g~~~~-d~-----~~~d~~~~~~-~~-~~~~~e 674 (922)
+...++||+ |+|... +..+..+ ..|+.+++.+...+. ...+ .+ .-.|.++.++ +. ...+..
T Consensus 80 ~~~~~~~Dvv-----~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 153 (372)
T cd03792 80 PLLDLDADVV-----VIHDPQPLALPLFKKKRGRPWIWRCHIDLSSP-NRRVWDFLQPYIEDYDAAVFHLPEYVPPQVPP 153 (372)
T ss_pred ccccCCCCEE-----EECCCCchhHHHhhhcCCCeEEEEeeeecCCC-cHHHHHHHHHHHHhCCEEeecHHHhcCCCCCC
Confidence 225689999 444332 1222222 467665543322111 0000 00 0123333332 11 222222
Q ss_pred ceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCC
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 751 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 751 (922)
+.+.+|+..-..... .....+ .....|.++|++++.++++.++|+ .|+++.+++++.++.+..|+.+|+++|.|
T Consensus 154 ~~~vipngvd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g 230 (372)
T cd03792 154 RKVIIPPSIDPLSGK---NRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG 230 (372)
T ss_pred ceEEeCCCCCCCccc---cCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence 222444332111000 000000 111357789999888899988886 59999999999999888899999999987
Q ss_pred hhh----HHHHHHHHHHcCCCCCceEEcCCC--CcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 752 AAG----EMRLRAYAVAQGVQPDQIIFTDVA--MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 752 ~~~----~~~l~~~~~~~g~~~~rv~f~~~~--~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
+.. .+.+++..+..++ .++|.|.|.. +..+...+|+.+|+|+.|+.++| |++++|||++|+|||+.+.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~ 309 (372)
T cd03792 231 ATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIP 309 (372)
T ss_pred CCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCch
Confidence 531 2234444556788 4889999975 67888889999999999999999 99999999999999976544333
Q ss_pred hhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 825 TRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 825 ~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.-+. -|..+ +++++.++++..+.++..|++.++.++++.++.. ...|+++.+++++.+.|+.
T Consensus 310 ~~i~------~~~~g-~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 310 LQIE------DGETG-FLVDTVEEAAVRILYLLRDPELRRKMGANAREHV--RENFLITRHLKDYLYLISK 371 (372)
T ss_pred hhcc------cCCce-EEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHh
Confidence 2221 15556 6777888999999999999999999999998876 3469999999999999975
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=2.6e-21 Score=202.86 Aligned_cols=260 Identities=22% Similarity=0.313 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002431 140 NLGNLMKAQGLVQEAYSCYLEALR-I-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217 (922)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 217 (922)
.++.++...|++++|++.+.+... . .|++...|..++.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456666666666666666654433 2 356666666666666667777777777777766666666666666666 5667
Q ss_pred ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
++++|.+++++..+..++...+...+.++...++++++...++++.... +.+...|..+|.++.+.|+.++|+..+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776666655555555566666666677777776666655433 45566677777777777777777777777
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++.+|+++.+...++.++...|+.+++...++......|.++..+..+|.++...|++++|+.+|+++++.+|+++..+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 77777777777777777777667666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
..+|.++...|+.++|..++.++++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6666666666666666666665543
No 61
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.86 E-value=1.1e-20 Score=212.92 Aligned_cols=340 Identities=11% Similarity=0.048 Sum_probs=216.5
Q ss_pred CcccceeeeecC-CC--CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC-----ceE---ECCCCCH
Q 002431 533 GLRRLRVGYVSS-DF--GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-----HFV---DVSAMSS 601 (922)
Q Consensus 533 ~~~~~rig~~s~-~~--~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~ 601 (922)
..+++||.++.. .. ..+++...+..+.+.+.+.++||++++..+....... .++-... .+. ...-...
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFH-GAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCcccc-CceeeccCCcCCccCCCceeeccCC
Confidence 367899998853 22 2345567788899999888999999986543211110 0110000 000 0000011
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCch----hh-h-hcCCCceEEeccccCCCCC----CCc----c------cEEEecC
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARN----EI-F-AMQPAPIQVSYMGFPGTTG----ASY----I------DYLVTDE 661 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~----~~-~-~~~~apvq~~~~g~~~t~g----~~~----~------d~~~~d~ 661 (922)
..+.+.|++.++||+ |++.... .+ + .....|+.+++.++..... ... + -+..+|.
T Consensus 134 ~~l~~~i~~~kpDiI-----h~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ 208 (465)
T PLN02871 134 PRIISEVARFKPDLI-----HASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADL 208 (465)
T ss_pred HHHHHHHHhCCCCEE-----EECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCE
Confidence 367889999999999 4433211 11 1 1234688887665531110 000 0 0123466
Q ss_pred ccCCcCccCCC--------ccceeecCCccccCCCccccccCCCCCCCCCcCCCC-CCCCcEEEEecCCC--CCCCHHHH
Q 002431 662 FVSPLRYAHIY--------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQL--YKMDPEIF 730 (922)
Q Consensus 662 ~~~~~~~~~~~--------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~~--~K~~~~~~ 730 (922)
+++++...... .+++..+|+..-. ..+.+.......|..++ .+++.++++.++|+ .|+.+.++
T Consensus 209 ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~------~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li 282 (465)
T PLN02871 209 TLVTSPALGKELEAAGVTAANRIRVWNKGVDS------ESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLK 282 (465)
T ss_pred EEECCHHHHHHHHHcCCCCcCeEEEeCCccCc------cccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHH
Confidence 66665432111 2333334432211 11111111112343442 23456777788876 48877777
Q ss_pred HHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHH
Q 002431 731 NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDIL 809 (922)
Q Consensus 731 ~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal 809 (922)
++. ++.|+.+|+|+|+|+. .+.+++.+.. .+|+|+|+++.++...+|+.+||||.|+.++| |++++|||
T Consensus 283 ~a~----~~~~~~~l~ivG~G~~-~~~l~~~~~~-----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 283 RVM----ERLPGARLAFVGDGPY-REELEKMFAG-----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred HHH----HhCCCcEEEEEeCChH-HHHHHHHhcc-----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 654 4568999999999876 6777776652 47999999999999999999999999998888 99999999
Q ss_pred HcCCCeeeecCCcchhhhHHHHHHh--cCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHH
Q 002431 810 WAGLPMITLPLEKMATRVAGSLCLA--TGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW 885 (922)
Q Consensus 810 ~~g~Pvv~~~~~~~~~r~~~~~~~~--~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (922)
+||+|||+........ ++.. .|-.+ ++. .|++++++.+.++.+|++.+.+++++.++... .||++.+
T Consensus 353 A~G~PVI~s~~gg~~e-----iv~~~~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~ 423 (465)
T PLN02871 353 ASGVPVVAARAGGIPD-----IIPPDQEGKTG-FLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAA 423 (465)
T ss_pred HcCCCEEEcCCCCcHh-----hhhcCCCCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHH
Confidence 9999999654332222 2221 14444 443 58999999999999999999999999998763 4999999
Q ss_pred HHHHHH-HHHHHHHHHhcC
Q 002431 886 VKNLER-SYFKMWSLHCSG 903 (922)
Q Consensus 886 ~~~~e~-~y~~~~~~~~~~ 903 (922)
++++++ .|++++.+|.+.
T Consensus 424 a~~l~~~~Y~~~~~~~~~~ 442 (465)
T PLN02871 424 TRKLRNEQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999998 799998888753
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.4e-16 Score=159.70 Aligned_cols=444 Identities=14% Similarity=0.132 Sum_probs=363.5
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
+.|+..+..+.-+...|...|.--..++++..|..+|++++..+..+...|...+.+-.+..+...|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555666666677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (922)
-...|+....+--..|+..-|.++|++-++..|+ ..+|......-.+.+..+.|..+|++.+-..|+ ...|...+..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHH
Confidence 9999999999999999999999999999998884 678889999999999999999999999988865 67889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCCh-
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQA- 252 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~- 252 (922)
.+.|+...|...|+.+++.-.++.. .+...+..-..++.++.|.-+|+-++..-|. ...+......--+-|+.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999986655433 5566677777888999999999999998887 23333343333444543
Q ss_pred --HHHH-----HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHhHHHH---HH
Q 002431 253 --DMAI-----LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-------ALTNLGNI---YM 315 (922)
Q Consensus 253 --~~A~-----~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~---~~ 315 (922)
++++ -.|++.++.+|.+.++|+.+..+....|+.+.-.+.|++++...|...+ +|..+-.+ -.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3467777889999999999999999999999999999999998776433 22222222 23
Q ss_pred HcCChhHHHHHHHHHHhcCCCC----chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (922)
...+.+.+.++|+.++++-|.. +..|...+....++.+...|.+.+-.++-..|.+ ..+-....+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 5688999999999999998874 5567888888899999999999999999999875 4455566777889999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHhhcccCChhhHhHHHHHH
Q 002431 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-FPE-ATCNLLHTLQCVCSWEDRDRMFSEV 466 (922)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 466 (922)
.++|++-++..|.+..+|...|..-..+|+.+.|..+|+-+++...- -|. .|-..+..-...|.++.+..+++.+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986432 222 3334444444444444444444443
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=1.4e-18 Score=190.32 Aligned_cols=395 Identities=18% Similarity=0.143 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQ 126 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 126 (922)
++...|...|-+++++++..+.++..+|..|...-+...|.++|+++.++++.+..++...+..|....+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45677778888888888888888888888888777888888888888888888888888888888888888888777555
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 127 ALALNPLL--VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 127 ~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
.-+..|.. ...|..+|-.|.+.++...|+..|+.+++.+|.+...|..+|.+|...|.+..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 54444432 2245557777888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-------C-CC
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGC-------D-PR 268 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~-p~ 268 (922)
..+..+.+.+..|++.+|+..+...+..... .+.+...+..+...|-..+|..++++.++. . -+
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888888888888888777654322 455555555555666666666666665532 1 12
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH--HHHcCCh------hHHHHHHHHHHhcCCCCchh
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI--YMEWNML------PAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~------~~A~~~~~~a~~~~~~~~~~ 340 (922)
+...|..++.++.-. ....|+-+...+..... ....+.. --+.+++-..++... .+..
T Consensus 712 ~~~~Wi~asdac~~f-------------~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~ 777 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIF-------------SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYP 777 (1238)
T ss_pred hHHHHHHHhHHHHHH-------------HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccch
Confidence 222333333322111 00011111100000000 0000000 011122222222111 1444
Q ss_pred hhhHHHHHHH--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 341 FNNLAVIYKQ--------QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 341 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
|+++|..|.. +.+...|+.++++++++..++...|+.+|.+ ...|++.-|..+|-+.+...|....+|.++
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 5555555544 1233456666666666666666666666655 444566666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCCh
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 456 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 456 (922)
|.++.+..+++.|...|.++..++|.+...|..........|+.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence 66666666666666666666666666666655555544444443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=9.3e-19 Score=168.82 Aligned_cols=410 Identities=21% Similarity=0.196 Sum_probs=293.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHH-HhcC--CCc---
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--------DIDLAIRYYLVA-IELR--PNF--- 100 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a-l~~~--p~~--- 100 (922)
.-+.++..+++...|+...++...+++..|++..+|.....++.+.- +-.+|...++.- +... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34677888999999999999999999999999889988888776532 222444444321 1111 110
Q ss_pred ----------HHH-----------HHHHHHH-HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 002431 101 ----------ADA-----------WSNLASA-YMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 101 ----------~~~-----------~~~la~~-~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 156 (922)
..+ -...... -.+-|..+.|+..-..+....+ ........+|..-...+.-.+
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~--- 162 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGK--- 162 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcc---
Confidence 000 0000000 1122333333332222111110 000111222222222111110
Q ss_pred HHHHHHhhCCC----cHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCChHH
Q 002431 157 CYLEALRIQPT----FAIA-WSNLAGLFMESGDLNRALQYYKEAVKLK---PT-------FPDAYLNLGNVYKALGMPQE 221 (922)
Q Consensus 157 ~~~~al~~~p~----~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~l~~~~~~~g~~~~ 221 (922)
|-.+-+++|. .+.. -...-.+++..++...|-......++.. |. +......+|.+|.+.|.+.+
T Consensus 163 -f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~ 241 (478)
T KOG1129|consen 163 -FYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRR 241 (478)
T ss_pred -eeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhh
Confidence 1111122221 1111 1112234556667777765555444331 11 22244678999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 222 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
|.+.++..++..|..+++..++.+|....++..|+..+.+.++..|.+...+...+.++..++++++|.++|+.+++.+|
T Consensus 242 AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~ 321 (478)
T KOG1129|consen 242 AEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP 321 (478)
T ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHH
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADGLVNR 378 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l 378 (922)
.+.++.-.++.-|+-.++.+-|+.+|++.++..-.+++.+.++|.+..-.++++-++..|++++.... ...++|+++
T Consensus 322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 99999988999999999999999999999999999999999999999999999999999999987632 346799999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 379 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
|.+....|++.-|..+|+-++..++++.+++++|+.+-.+.|+.++|..+++.+....|+-.+..+|+..
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999987777766543
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=7e-18 Score=186.05 Aligned_cols=300 Identities=13% Similarity=0.028 Sum_probs=184.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcC
Q 002431 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESG 183 (922)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 183 (922)
...|......|+++.|.+.+.++.+..|+....+...+.++..+|+++.|...+.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 34455555666777777766666666666666666666666666777777777766666666654 34444566666666
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.... ...+..+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------- 227 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------- 227 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence 6666666666666666666666666666666666666666666666654221 1111000
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 338 (922)
.......+...+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00001111111222223333444444333 3444555555555555555555555555555555444
Q ss_pred hhh--hhHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhhCCCcHHHHHHH
Q 002431 339 APF--NNLAVIYKQQGNYADAISCYNEVLRIDPLAA--DGLVNRGNTYKEIGRVTDAIQDYI--RAITIRPTMAEAHANL 412 (922)
Q Consensus 339 ~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l 412 (922)
... ..........++.+++++.++++++.+|+++ ..+..+|+++.+.|++++|.+.|+ .+++..|++.. +..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 321 1112222334677888888999999999998 888889999999999999999999 57777887654 5589
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~ 435 (922)
|.++.+.|+.++|.++|++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 66
>PLN02949 transferase, transferring glycosyl groups
Probab=99.84 E-value=1e-19 Score=200.64 Aligned_cols=348 Identities=12% Similarity=0.108 Sum_probs=217.1
Q ss_pred CcccceeeeecCCCCCC-hhHhhhhHHhhcCCCC--CeEEEEEecCCCCC-hHHHHHHHhccC-------ceEEC-----
Q 002431 533 GLRRLRVGYVSSDFGNH-PLSHLMGSVFGMHNKE--NVEVFCYALSPNDG-TEWRQRTQSEAE-------HFVDV----- 596 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h-~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~----- 596 (922)
..++++|||+=++.+.+ +..+++......+.+. +.+|++|+..-+.. +..-...+..+. .|+.+
T Consensus 30 ~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 30 RSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred cCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccc
Confidence 35678999999999887 5556665555554433 35888888542211 221111221111 12222
Q ss_pred ---CCCC-----H------HHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCC------------
Q 002431 597 ---SAMS-----S------DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------ 650 (922)
Q Consensus 597 ---~~~~-----~------~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g------------ 650 (922)
..+. . .-..+.+....+||.||..|+..+ .+++....+|| +.|..||.-+.
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~--~pl~~~~~~~v-~~yvH~p~~~~dm~~~v~~~~~~ 186 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFT--YPLARLFGCKV-VCYTHYPTISSDMISRVRDRSSM 186 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccH--HHHHHhcCCcE-EEEEeCCcchHHHHHHHhhcccc
Confidence 1111 0 112333444678999999986532 35544333555 45556663221
Q ss_pred -----------C----Cc-----cc--E----EEecCccCCcCccCCCccceeecCC-ccccCCCccccccCCCCCCCCC
Q 002431 651 -----------A----SY-----ID--Y----LVTDEFVSPLRYAHIYSEKLVHVPH-CYFVNDYKQKNMDVLDPNCQPK 703 (922)
Q Consensus 651 -----------~----~~-----~d--~----~~~d~~~~~~~~~~~~~e~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~ 703 (922)
. .. ++ | ..+|.+++++........+.+..|. ..+.+++...... .. .+.
T Consensus 187 ~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~--~~--~~~ 262 (463)
T PLN02949 187 YNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGL--QA--LPL 262 (463)
T ss_pred cCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHc--cc--CCc
Confidence 0 00 01 0 2356667666543322233333332 1222222111000 00 000
Q ss_pred cCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhh----CCCeEEEEecCChhh-----HHHHHHHHHHcCCCCCce
Q 002431 704 RSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRR----VPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~rv 772 (922)
. -+++..+|.+++| +.|+++.++++|+++.++ .|+.+|+|+|+++.. .+.|++.++++|+ .++|
T Consensus 263 ~----~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V 337 (463)
T PLN02949 263 E----RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDV 337 (463)
T ss_pred c----ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcE
Confidence 0 0122244556665 469999999999998764 478999999986421 2578999999999 5999
Q ss_pred EEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCc-chhhhHHHHHHhcCCCCccccCCHHHHH
Q 002431 773 IFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYE 850 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~-~~~r~~~~~~~~~g~~~~~i~~~~~~~~ 850 (922)
.|+|..+.++...+|+.+|++|.|+.+|| |++++|||++|+|||+.+... ...-+... .-|..+ +.+.|+++++
T Consensus 338 ~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG-~l~~~~~~la 413 (463)
T PLN02949 338 EFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTG-FLATTVEEYA 413 (463)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCccc-ccCCCHHHHH
Confidence 99999999999999999999999998899 999999999999999765221 11111000 004455 6778999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 851 ERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 851 ~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
+.+.++.+ +++.+.+|+++.+++.. .||.+.|++++++.|+.+++.
T Consensus 414 ~ai~~ll~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 414 DAILEVLRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHhh
Confidence 99999998 67889999999998763 399999999999999988763
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=7.8e-21 Score=199.32 Aligned_cols=261 Identities=22% Similarity=0.295 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVK-L-KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
..++.++...|++++|++.+++... . .|+++..|..++.+....+++++|+..|++++...+. ...+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4668899999999999999966544 4 4788888888999999999999999999999888776 5666677777 788
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYY 327 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~ 327 (922)
+++++|..++.+..+..++ ...+...+.++...++++++...++++.... +.++..+..+|.++.+.|+.++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998888765543 4566777788888899999999998877654 567788889999999999999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 002431 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (922)
+++++.+|++..+...++.++...|+.+++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999888888888887888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+...+|.++...|+.++|.++++++++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999988887653
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.84 E-value=3.3e-20 Score=206.38 Aligned_cols=336 Identities=17% Similarity=0.149 Sum_probs=215.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC--c----eEECCCCCH--------H
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--H----FVDVSAMSS--------D 602 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~--------~ 602 (922)
+||.++.+++...++.+.+..+.+.+.+.++||++++.......... ....... + |........ .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFE-ETKDGTLPVRVRGDWLPRSIFGRFHILCAYLR 79 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcch-hccCCeeEEEEEeEEEcchhhHhHHHHHHHHH
Confidence 58999999988888889999999999999999999986432211111 1111101 1 111100010 0
Q ss_pred HHH-----HHHHhCCCeEEEcCCCcCCCCchh--hhhc-CCCceEEeccccCCCCCCC---c--------------ccEE
Q 002431 603 MIA-----KLINEDKIQILINLNGYTKGARNE--IFAM-QPAPIQVSYMGFPGTTGAS---Y--------------IDYL 657 (922)
Q Consensus 603 ~~~-----~~i~~~~~dil~~~~~~~~~~~~~--~~~~-~~apvq~~~~g~~~t~g~~---~--------------~d~~ 657 (922)
.+. ..++..++||++ ++..... +... ++.|+.... .+|...... . .-+.
T Consensus 80 ~~~~~~~~~~~~~~~~Dvi~-----~~~~~~~~~~~~~~~~~~~i~~~-h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 153 (392)
T cd03805 80 MLYLALYLLLLPDEKYDVFI-----VDQVSACVPLLKLFSPSKILFYC-HFPDQLLAQRGSLLKRLYRKPFDWLEEFTTG 153 (392)
T ss_pred HHHHHHHHHhcccCCCCEEE-----EcCcchHHHHHHHhcCCcEEEEE-ecChHHhcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 011 134567999995 3332222 2221 225655443 234321110 0 0123
Q ss_pred EecCccCCcCccCCCcccee-ecCCc--cccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHH
Q 002431 658 VTDEFVSPLRYAHIYSEKLV-HVPHC--YFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNT 732 (922)
Q Consensus 658 ~~d~~~~~~~~~~~~~e~~~-~lp~~--~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~ 732 (922)
.+|.+++++.....+.++.+ ..+.. .+.+++.......+ +.....+...+.+++.++|+.++|+ .|+.+.++++
T Consensus 154 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~-~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a 232 (392)
T cd03805 154 MADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFES-TSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEA 232 (392)
T ss_pred CceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCc-ccccccccccccCCCceEEEEEeeecccCChHHHHHH
Confidence 45666666554222222111 11111 12222221111111 1111134445566777888888875 5999999999
Q ss_pred HHHHHhhC---CCeEEEEecCChhh-------HHHHHHHHHH-cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002431 733 WCNILRRV---PNSALWLLRFPAAG-------EMRLRAYAVA-QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801 (922)
Q Consensus 733 ~~~il~~~---p~~~l~~~~~~~~~-------~~~l~~~~~~-~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g 801 (922)
+.++.+.. |+.+|+++|+++.. .+.+++.+.+ .|+ .++|.|+|.++..+...+|..+|++|.|+.++|
T Consensus 233 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~ 311 (392)
T cd03805 233 FAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFLPSISDSQKELLLSSARALLYTPSNEH 311 (392)
T ss_pred HHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEeCCCChHHHHHHHhhCeEEEECCCcCC
Confidence 99998887 89999999987531 2678888888 999 599999999999999999999999999998898
Q ss_pred -hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 802 -HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 802 -~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|++++|||+||+|||+.........+.. |-.+.++..|++++++.+.++..|++.+.+++++.++.. ...|
T Consensus 312 ~g~~~lEAma~G~PvI~s~~~~~~e~i~~------~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~--~~~~ 383 (392)
T cd03805 312 FGIVPLEAMYAGKPVIACNSGGPLETVVD------GETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRV--KEKF 383 (392)
T ss_pred CCchHHHHHHcCCCEEEECCCCcHHHhcc------CCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhc
Confidence 9999999999999998765544443331 333424556899999999999999999999999998876 3469
Q ss_pred ChHHHHHHH
Q 002431 881 DTARWVKNL 889 (922)
Q Consensus 881 ~~~~~~~~~ 889 (922)
+++.+++++
T Consensus 384 s~~~~~~~~ 392 (392)
T cd03805 384 STEAFAERL 392 (392)
T ss_pred CHHHHhhhC
Confidence 999888763
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=1e-17 Score=184.82 Aligned_cols=299 Identities=14% Similarity=-0.007 Sum_probs=143.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcC
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA-DAWSNLASAYMRKG 115 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 115 (922)
...|...+..|+++.|.+.+.++.+..|+....+...|.++.+.|+++.|.+++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 33444445555555555555555555544444444555555555555555555555555444432 23333455555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (922)
++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+...+..+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------- 227 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------- 227 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence 555555555555555555555555555555555555555555555544422221111000
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 196 VKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 196 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
.......+...+..+++.+.+.++.+..| +...+..++..+...|++++|.+.++++++..|++.
T Consensus 228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00111111122222223334444444333 244444445555555555555555555555444443
Q ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh--HHHHhHHHHHHHcCChhHHHHHHH--HHHhcCCCCchhhhhH
Q 002431 271 EAY--NNLGNALKDVGRVDEAIQCYNQCLSLQPSHP--QALTNLGNIYMEWNMLPAAASYYK--ATLAVTTGLSAPFNNL 344 (922)
Q Consensus 271 ~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~l 344 (922)
... ..........++.+.+++.++++++..|+++ .....+|.++.+.|++++|.++|+ .+++..|+... +..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 211 1111122223455555666666666666666 555566666666666666666666 34444454433 3366
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc
Q 002431 345 AVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~ 366 (922)
|.++.+.|+.++|.+++++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666544
No 70
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.84 E-value=1.4e-19 Score=198.86 Aligned_cols=318 Identities=14% Similarity=0.190 Sum_probs=208.3
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC------HHHHHHHHHhC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS------SDMIAKLINED 611 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ 611 (922)
||.++.+++..+++..++..+.+.+.+.+++|++++...... .....+......++.+.... ...+.+.++..
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKN 79 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-chHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcC
Confidence 688899988777888999999999998899999988765432 23444555555454333211 24566777889
Q ss_pred CCeEEEcCCCcCCCCchhhhhc-CCCceEEecc-ccCCCCC-CCc---------ccEEEecCccCCcCccC--C----Cc
Q 002431 612 KIQILINLNGYTKGARNEIFAM-QPAPIQVSYM-GFPGTTG-ASY---------IDYLVTDEFVSPLRYAH--I----YS 673 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~-g~~~t~g-~~~---------~d~~~~d~~~~~~~~~~--~----~~ 673 (922)
++||++-.+.+... -..++.. ...|+.+.+. +...... ... .-+..+|.+++++.... . ..
T Consensus 80 ~~Dvv~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 158 (358)
T cd03812 80 KYDIVHVHGSSASG-FILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKVKN 158 (358)
T ss_pred CCCEEEEeCcchhH-HHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCCCc
Confidence 99999433322111 1111121 2346554331 1111111 110 01123455555544311 1 12
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCC
Q 002431 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 751 (922)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 751 (922)
+++.-+|+..- .....+.+.....+.+.+.+++.++++.++|+ .|+.+.+++++..+.+..|+.+++|+|+|
T Consensus 159 ~~~~vi~ngvd------~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g 232 (358)
T cd03812 159 KKFKVIPNGID------LEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG 232 (358)
T ss_pred ccEEEEeccCc------HHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 33333443221 11111111111225556777788888888875 59999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHH
Q 002431 752 AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGS 830 (922)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~ 830 (922)
+. .+.+++.+++.|+ .++|.|.|. ..+...+|+.+|++|.|+.++| |++++|||++|+|||+........-++
T Consensus 233 ~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~-- 306 (358)
T cd03812 233 EL-EEEIKKKVKELGL-EDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLT-- 306 (358)
T ss_pred ch-HHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhc--
Confidence 86 7788999999999 599999998 5567778999999999998888 999999999999999776554443332
Q ss_pred HHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 831 LCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 831 ~~~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
. +..- +.. ++++++++++.++.+|++.++.++...+...
T Consensus 307 ---~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 307 ---D-LVKF-LSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred ---c-CccE-EeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1 2222 333 4569999999999999999888877666543
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=9.2e-17 Score=169.56 Aligned_cols=426 Identities=18% Similarity=0.197 Sum_probs=320.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...++..+.-.+..++|.+.++..+.+++..|...+.....|..+...|+-++|..+...++..++.+..+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 44567777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
...+|++|+++|..++..+|+|...+..++.+..+.++++.....-.+.++..|.....|...+..+...|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcC---CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHH
Q 002431 193 KEAVKLK---PTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI 263 (922)
Q Consensus 193 ~~~l~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 263 (922)
+...+.. |+. ............+.|..++|.+.+.+.-...-+ .......+.++.+.+++++|...+...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 8887754 322 124455566777888888888877765443333 4455677899999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHH-HHHHHHhcCCCCchhh
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS-YYKATLAVTTGLSAPF 341 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~ 341 (922)
..+|++...+..+-.++.+-.+.-+++ ..|...-+..|. ...-..++.....-.++..... ++...++. ..+.++
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K--g~p~vf 323 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK--GVPSVF 323 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhc--CCCchh
Confidence 999999988888777776444444555 455544443333 2233333333332233333322 22333322 223333
Q ss_pred hhHHHHHHHcCCH---HHHHHHHHHHHcc------------CCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 342 NNLAVIYKQQGNY---ADAISCYNEVLRI------------DPLAA--DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 342 ~~la~~~~~~g~~---~~A~~~~~~al~~------------~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..+-..|..-.+. ++-+..|...+.- .|..+ ..++.++.-+...|+++.|..+...|+...|+
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 3333333222111 1111112222211 12222 35667888899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 461 (922)
.++.+..-|+++...|++++|..+++.+.+++-.+...-..-+.-.......++|..
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999999999999999999999987665444344444444444555543
No 72
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.83 E-value=1.7e-19 Score=194.84 Aligned_cols=325 Identities=9% Similarity=-0.023 Sum_probs=201.5
Q ss_pred ccceeeeecCCCCCC--hhHhhhhHHhhcCCCCC-eEEEEEecCCCCC---------------hHHHHHHHhccC----c
Q 002431 535 RRLRVGYVSSDFGNH--PLSHLMGSVFGMHNKEN-VEVFCYALSPNDG---------------TEWRQRTQSEAE----H 592 (922)
Q Consensus 535 ~~~rig~~s~~~~~h--~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~---------------~~~~~~~~~~~~----~ 592 (922)
.++||++++..+--. ++...+..+...+-+.+ .||+++.+..... ..-...++.... +
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 569999999877443 44455555666777777 6999987642110 000111221111 1
Q ss_pred eEE--C------------CCCCHHHHHHHHHhCCCeEEEcCCCcCCCC-chhhh--h----cCCCceEEeccccC-CC--
Q 002431 593 FVD--V------------SAMSSDMIAKLINEDKIQILINLNGYTKGA-RNEIF--A----MQPAPIQVSYMGFP-GT-- 648 (922)
Q Consensus 593 ~~~--~------------~~~~~~~~~~~i~~~~~dil~~~~~~~~~~-~~~~~--~----~~~apvq~~~~g~~-~t-- 648 (922)
+.. + ..+...++.+.|++.++||+ |.+.- .++.. + .|.-++..++.... ..
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVI-----Hv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~ 157 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIA-----VLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVK 157 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEE-----EEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHH
Confidence 111 0 11234678999999999999 55422 23333 2 23334444443322 11
Q ss_pred -CCC---C---------cccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCc--
Q 002431 649 -TGA---S---------YIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-- 713 (922)
Q Consensus 649 -~g~---~---------~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-- 713 (922)
.+. . .+-.+.+|.++.|+.....+.+..+..++ .+ + .....+.....+..++ +++.
T Consensus 158 ~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~-GV-----d--~~~f~~~~~~~~~~~~-~~~~~~ 228 (462)
T PLN02846 158 REKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVH-GV-----N--PKFLEIGKLKLEQQKN-GEQAFT 228 (462)
T ss_pred HhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCc-ee-----c--hhhcCCCcccHhhhcC-CCCCcc
Confidence 010 0 01012368888888754334444443332 11 1 1111222222222232 3443
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+++.++|+ .|+.+.+++++.++.+..|+.+|+|+|+||. ++.|++.+.++|++ .+| |.|..+.++ +|+.+|
T Consensus 229 ~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~-~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~D 302 (462)
T PLN02846 229 KGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED-SDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYK 302 (462)
T ss_pred eEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc-HHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCC
Confidence 356677776 4999999999999988899999999999998 89999999999994 555 899765554 456679
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
|||.||.+++ |++++|||+||+|||+...+. ..++.. |-+. +..+|.+++++++.+++.++. ..++...
T Consensus 303 vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~------~~~v~~-~~ng-~~~~~~~~~a~ai~~~l~~~~--~~~~~~a 372 (462)
T PLN02846 303 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NEFFKQ-FPNC-RTYDDGKGFVRATLKALAEEP--APLTDAQ 372 (462)
T ss_pred EEEECCCcccchHHHHHHHHcCCcEEEecCCC------cceeec-CCce-EecCCHHHHHHHHHHHHccCc--hhHHHHH
Confidence 9999999999 999999999999999765432 122222 4444 566899999999999887532 2223333
Q ss_pred HhhcccCCCCChHHHHHHHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++ .||++..++++++.|+-
T Consensus 373 ~~------~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 373 RH------ELSWEAATERFLRVADL 391 (462)
T ss_pred HH------hCCHHHHHHHHHHHhcc
Confidence 22 49999999999999863
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.8e-16 Score=164.19 Aligned_cols=442 Identities=15% Similarity=0.076 Sum_probs=307.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.-...+..+|+|++|.+...+++...|++..++...-.++.+.++|++|+++.++-...... ....+..+.|.++.+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHccc
Confidence 344566778899999999999999999999999999999999999999999665543322212 2223789999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
.++|+..++ ..++.+..+....+++++++|+|++|..+|+.+.+.+.++.+............. ..+. ..+..
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~--~~q~v 167 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ--LLQSV 167 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH--HHHhc
Confidence 999999998 4456667788889999999999999999999999888776665433322221110 1111 22333
Q ss_pred hhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 002431 163 RIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--------PTF-------PDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 163 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
...|. +...+++.+.++...|+|.+|++.+++++++. .++ ..+...++.++..+|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33443 67788999999999999999999999995431 111 126778899999999999999999
Q ss_pred HHHHhhCCC-----hhHHHhHHHHHHHcCChH-HHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHcCCHHHHH
Q 002431 227 QRAVQTRPN-----AIAFGNLASTYYERGQAD-MAILYYKQAIGCDPR----------FLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 227 ~~~~~~~p~-----~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
...+..+|. ..+-+++..+-....-++ .++..++......++ -...+.+.+...+..+.-+.+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999998765 223333333222222122 122222221111111 1123445555555566666666
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHH----
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVL---- 365 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al---- 365 (922)
+.....-...|....-.........+...+.+|..++....+..|.. ..+...++.+...+|+++.|++.+...+
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 55554433344433222333333344447889999999999988887 6678888999999999999999999433
Q ss_pred ----ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 366 ----RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 366 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+.. ..+.+-..+-..+.+.++.+.|...+.+++.- .+.....+..++..-.+.|+-++|...++++++
T Consensus 408 ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 408 SSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 222 33444455556677777777777777776653 223334566677888888999999999999999
Q ss_pred cCCCCHHHHHHHHHhhccc
Q 002431 435 LRPDFPEATCNLLHTLQCV 453 (922)
Q Consensus 435 ~~p~~~~~~~~l~~~~~~~ 453 (922)
.+|++..+...++.++...
T Consensus 487 ~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hCCchHHHHHHHHHHHHhc
Confidence 9999999999999888763
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.83 E-value=1.6e-19 Score=201.45 Aligned_cols=326 Identities=12% Similarity=0.083 Sum_probs=213.5
Q ss_pred CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC-----CCCH-----------HHHH-HHHHh
Q 002431 548 NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS-----AMSS-----------DMIA-KLINE 610 (922)
Q Consensus 548 ~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~~-~~i~~ 610 (922)
.+++..++..+.+.+.+.++||++++............+. ....++.+. .... ..+. ..++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVA-PGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARH 97 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccC-CCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788999999999999999999864322110010111 111222221 1110 0112 33332
Q ss_pred --CCCeEEEcCCCcCCCCchhhhh-----cCCCceEEeccccCC--CCCC-----Cc--c-------cEEEecCccCCcC
Q 002431 611 --DKIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGFPG--TTGA-----SY--I-------DYLVTDEFVSPLR 667 (922)
Q Consensus 611 --~~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~~~--t~g~-----~~--~-------d~~~~d~~~~~~~ 667 (922)
.++||+ |+|.....+++ ....|+.+++.+... ...+ +. . -+..+|.+++.+.
T Consensus 98 ~~~~~Dii-----h~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~ 172 (405)
T TIGR03449 98 EPGYYDLI-----HSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTD 172 (405)
T ss_pred cCCCCCeE-----EechHHHHHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCH
Confidence 479999 77754332222 123588877654311 0000 00 0 0113455555443
Q ss_pred c-cC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002431 668 Y-AH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (922)
Q Consensus 668 ~-~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il 737 (922)
. .. ...+++..+|++.-.. .. .+......+.++|++++.++|++++|+ .|+.+.+++++.+++
T Consensus 173 ~~~~~~~~~~~~~~~ki~vi~ngvd~~------~~-~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~ 245 (405)
T TIGR03449 173 EEARDLVRHYDADPDRIDVVAPGADLE------RF-RPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELL 245 (405)
T ss_pred HHHHHHHHHcCCChhhEEEECCCcCHH------Hc-CCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHH
Confidence 2 11 1123444444432111 01 111122367788998888888888876 599999999999999
Q ss_pred hhCCC--eEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHH
Q 002431 738 RRVPN--SALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILW 810 (922)
Q Consensus 738 ~~~p~--~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~ 810 (922)
+..|+ .+|+++|.+. ...+.+++.+++.|+ .++|.|+|.++.++...+|+.+|+++.|+..+| |++++|||+
T Consensus 246 ~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma 324 (405)
T TIGR03449 246 DRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI-ADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQA 324 (405)
T ss_pred hhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC-CceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHH
Confidence 98887 8889998532 225788999999999 489999999999999999999999999988888 999999999
Q ss_pred cCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHH
Q 002431 811 AGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 811 ~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (922)
+|+|||+........- +. -|-.+ +++ .|++++++.+.++.+|++.+..++++.++... .|+++.++++
T Consensus 325 ~G~Pvi~~~~~~~~e~-----i~-~~~~g-~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~ 394 (405)
T TIGR03449 325 CGTPVVAARVGGLPVA-----VA-DGETG-LLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADG 394 (405)
T ss_pred cCCCEEEecCCCcHhh-----hc-cCCce-EECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHH
Confidence 9999997654333221 11 13444 443 48999999999999999999999999887642 4999999999
Q ss_pred HHHHHHHHH
Q 002431 889 LERSYFKMW 897 (922)
Q Consensus 889 ~e~~y~~~~ 897 (922)
++++|.++.
T Consensus 395 ~~~~y~~~~ 403 (405)
T TIGR03449 395 LLSSYRDAL 403 (405)
T ss_pred HHHHHHHHh
Confidence 999999875
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=4e-17 Score=178.94 Aligned_cols=294 Identities=12% Similarity=0.006 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHc
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRK 114 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~ 114 (922)
.+..|......|++++|.+.+.+..+..+.....+...+....+.|+++.|..++.++.+.+|++... ....+..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 34556666666777777766665544332222233333444477777777777777777766665432 23346677777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH--------HHHHHHHHHcCCHH
Q 002431 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW--------SNLAGLFMESGDLN 186 (922)
Q Consensus 115 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~~g~~~ 186 (922)
|++++|...++++.+.+|+++.++..++.+|...|++++|.+.+.++.+..+.+.... ..+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777777777777777777777777777777777777776666544432211 11111122223333
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
...+.++...+..|+++.+...++..+...|+.++|.+.+++.++..++.......+. ...++.+++++.+++.++.+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhC
Confidence 3444444444444556666666666666666666666666666665444432222222 23366666666666666666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
|+++..+..+|.++...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|..+|++++.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666665533 234556666666666666666655544
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=2.9e-18 Score=196.26 Aligned_cols=270 Identities=16% Similarity=0.072 Sum_probs=219.4
Q ss_pred hCCCchH--HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 002431 28 RNPLRTD--NLLLLGAIYYQ---LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVA 93 (922)
Q Consensus 28 ~~p~~~~--~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 93 (922)
..+.+.+ .++..|..... .+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4444444 34445544432 35689999999999999999999999999887643 3488999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+...+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCC
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 251 (922)
.++.+++..|++++|+..++++++.. |+++..+..+|.++...|++++|...+.++....|+ ......++..|...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77777888999999999999998775 778888999999999999999999999998887777 6667777888888774
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+|...++++++..............++.-.|+.+.+... +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777777776643222221223366777777887777766 6666543
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=4.2e-17 Score=178.77 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=240.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHc
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-GAIYYQLHDYDMCIARNEEALRLEPRFAEC-YGNMANAWKEK 80 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~ 80 (922)
+..|...+..|+|++|.+.+.+..+..+. +..++.+ +....+.|+++.|..++.++.+..|++... ....+..+...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45677788899999999888886654333 4444444 666699999999999999999999987543 34559999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS--------NLGNLMKAQGLVQ 152 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~~ 152 (922)
|++++|...++++.+.+|+++.++..++.+|.+.|++++|++.+.++.+..+.+..... .+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999988765544222 2222222333444
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
...+.++...+..|+++.+...++..+...|+.++|.+.+++.++. +.++......+.+ ..++.+++++.+++.++.
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 5555555555566789999999999999999999999999999994 4455544444443 459999999999999999
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+|+ ...+..+|.++...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|.++|++.+...
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998 77899999999999999999999999999999976 67789999999999999999999998753
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.82 E-value=5.1e-19 Score=194.96 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=221.5
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--CC-----CHHHHHHHHHh
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AM-----SSDMIAKLINE 610 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~i~~ 610 (922)
||.++.+.+..+++...+..+++.+.+.++++.+++..... .....+......++.+. .. ....+.+.+++
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~--~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRG--ELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRR 78 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcch--hhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHh
Confidence 68899998888888899999999998888999888865332 23333444332232222 11 12567888899
Q ss_pred CCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCC--CCc----cc---EEEecCccCCcCccC-------CC
Q 002431 611 DKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTG--ASY----ID---YLVTDEFVSPLRYAH-------IY 672 (922)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g--~~~----~d---~~~~d~~~~~~~~~~-------~~ 672 (922)
.++||++....++.... .+... +..|+..+..+.....+ ... +. ...+|.+++++.... ..
T Consensus 79 ~~~div~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 157 (365)
T cd03807 79 LRPDVVHTWMYHADLYG-GLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYP 157 (365)
T ss_pred hCCCEEEeccccccHHH-HHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCC
Confidence 99999965443322111 11111 33466655444332211 100 00 012333333333211 11
Q ss_pred ccceeecCCccccCCCccccccCC-CCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 673 SEKLVHVPHCYFVNDYKQKNMDVL-DPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~-~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
.+++..+|+..-. ....+ .......|+++|++++.++++.+++. .|+.+.+++++.++.+..|+.+|+++|
T Consensus 158 ~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G 231 (365)
T cd03807 158 PKKIVVIPNGVDT------ERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVG 231 (365)
T ss_pred hhheeEeCCCcCH------HhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2333334432111 00101 11112256788999888888888875 599999999999999889999999999
Q ss_pred CChhhHHHHHHHHH-HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhh
Q 002431 750 FPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRV 827 (922)
Q Consensus 750 ~~~~~~~~l~~~~~-~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~ 827 (922)
.++. ...++.... +.|+ .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+........-+
T Consensus 232 ~~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~ 307 (365)
T cd03807 232 DGPD-RANLELLALKELGL-EDKVILLGE--RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELV 307 (365)
T ss_pred CCcc-hhHHHHHHHHhcCC-CceEEEccc--cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHh
Confidence 8865 556666665 8888 589999995 4567788999999999998888 99999999999999986654333222
Q ss_pred HHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 828 AGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 828 ~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
. . .+.++ .+|.+++++.+..+.+|++.+..++++.++.. ...|+++.+++++++.|+
T Consensus 308 ~-----~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 308 G-----D---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERI--EENFSIEAMVEAYEELYR 365 (365)
T ss_pred h-----c---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 2 2 23122 35899999999999999999999999988876 446999999999999884
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=1.1e-17 Score=191.41 Aligned_cols=251 Identities=16% Similarity=0.072 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK---------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
+++++|+..|+++++.+|+++.++..+|.++... +++++|...++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4679999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777777778889999999999999988
Q ss_pred hC-CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHh
Q 002431 232 TR-PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309 (922)
Q Consensus 232 ~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (922)
.. |+ ...+..++.++...|++++|...+.++....|........++..+...| ++|...++++++.....+.....
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH
Confidence 75 55 6778899999999999999999999999889988888888999888888 47888888877654333333334
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVT 334 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~ 334 (922)
...++.-.|+-+.+..+ +++.+..
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77788888888888877 7766554
No 80
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.81 E-value=5.7e-19 Score=195.02 Aligned_cols=331 Identities=16% Similarity=0.178 Sum_probs=215.0
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-----------CHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-----------SSDMIA 605 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 605 (922)
|||.+++.. ..++++..+..+.+.+.+.++||.+++...... .............++... ....+.
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFR--LDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIA 77 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcc--hhhhccCeEEEEecccccchhhcchhHHHHHHHHH
Confidence 577777732 224566788889999988889999887643211 111111111111111110 024567
Q ss_pred HHHHhCCCeEEEcCCCcCCCCc----hhhhhc-----CCCceEEeccccCCC-CCC-Cccc------EEEecCccCCcCc
Q 002431 606 KLINEDKIQILINLNGYTKGAR----NEIFAM-----QPAPIQVSYMGFPGT-TGA-SYID------YLVTDEFVSPLRY 668 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~----~~~~~~-----~~apvq~~~~g~~~t-~g~-~~~d------~~~~d~~~~~~~~ 668 (922)
+.|++.++||+ |.|... ..+++. +..|+.++..|.... .+. +... +..+|.+++.+..
T Consensus 78 ~~i~~~~~div-----h~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 78 EVAKRYKLDLL-----HVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHhcCCccEE-----eecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHH
Confidence 88889999999 554322 122221 145777765543211 010 0000 1123555544443
Q ss_pred cC-----C--CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh
Q 002431 669 AH-----I--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR 739 (922)
Q Consensus 669 ~~-----~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~ 739 (922)
.. . ..+++..+|+..- ...+. +......+.+++++++.++++.++|+ .|+.+.++++|.++.++
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n~~~------~~~~~-~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~ 225 (371)
T cd04962 153 LRQETYELFDITKEIEVIPNFVD------EDRFR-PKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE 225 (371)
T ss_pred HHHHHHHhcCCcCCEEEecCCcC------HhhcC-CCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc
Confidence 11 1 1233434443221 10111 11112356678888888888888875 59999999999988665
Q ss_pred CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeee
Q 002431 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITL 818 (922)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~ 818 (922)
++.+|+++|.|+. .+.+++.+.+.|+ .++|.|.|.. .+...+|..+|+++.|+.++| |++++|||++|+|||+.
T Consensus 226 -~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 226 -VPARLLLVGDGPE-RSPAERLARELGL-QDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVAS 300 (371)
T ss_pred -CCceEEEEcCCcC-HHHHHHHHHHcCC-CceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe
Confidence 5589999999876 7788999999999 4899999975 456777999999999998888 99999999999999976
Q ss_pred cCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 819 PLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
+.....+-+. . |..+ +++ .|.+++++++..++.|++.+..++++.++.. ...|+++.+++++.+.|+++
T Consensus 301 ~~~~~~e~i~-----~-~~~G-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 301 NAGGIPEVVK-----H-GETG-FLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRA--AERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCCCchhhhc-----C-CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 5543333221 1 3444 444 3889999999999999999999999998874 23599999999999999863
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.81 E-value=3.3e-19 Score=194.54 Aligned_cols=323 Identities=13% Similarity=0.202 Sum_probs=200.9
Q ss_pred ceeeeecCCCC-CChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccC-ceEECC--C--CCHHHHHHHH
Q 002431 537 LRVGYVSSDFG-NHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS--A--MSSDMIAKLI 608 (922)
Q Consensus 537 ~rig~~s~~~~-~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~i 608 (922)
|||.+++..+. .+++.+++..+.+++.+. ++|+++++..........+.+..... .-..+. . .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 68999987664 377889999999999888 79999888654322212222210000 000111 0 1135678899
Q ss_pred HhCCCeEEEcCCCcCCCCchhhhhc---C--CCceE-Eeccc--cCCCCCCCcccEEEecCccCCcCccCCC-------c
Q 002431 609 NEDKIQILINLNGYTKGARNEIFAM---Q--PAPIQ-VSYMG--FPGTTGASYIDYLVTDEFVSPLRYAHIY-------S 673 (922)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~~~~~---~--~apvq-~~~~g--~~~t~g~~~~d~~~~d~~~~~~~~~~~~-------~ 673 (922)
++.++||+ |++.....+++. + ..|+. ++|.. .+.........+..+|.+++++.....+ .
T Consensus 81 ~~~~~Dii-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~ 155 (359)
T PRK09922 81 KETQPDIV-----ICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISA 155 (359)
T ss_pred HhcCCCEE-----EEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCH
Confidence 99999999 554433222221 1 12332 33321 1111111111234556666555542111 1
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+++..+|+.. +...... +. +. .++.++++.++|+ .|+...+++++.++. ++.+|+++|
T Consensus 156 ~ki~vi~N~i------d~~~~~~-~~--~~------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG 217 (359)
T PRK09922 156 QRISVIYNPV------EIKTIII-PP--PE------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG 217 (359)
T ss_pred HHEEEEcCCC------CHHHccC-CC--cc------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe
Confidence 2333333321 1000000 00 00 1223556666653 488999999988763 478999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCC--cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec-CCcchh
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAM--KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMAT 825 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~--~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~-~~~~~~ 825 (922)
+|+. .+.+++.+++.|+ .++|.|+|.++ .++....|..+|+++.|+.++| |++++|||+||+|||+.. ......
T Consensus 218 ~g~~-~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~e 295 (359)
T PRK09922 218 DGSD-FEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRD 295 (359)
T ss_pred CCcc-HHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHH
Confidence 9987 8889999999999 58999999764 3667778899999999999999 999999999999999776 332222
Q ss_pred hhHHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHH--HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKL--QALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++.. |..+ ++ ..|++++++++.++.+|++.| ...++.+++ |..+.+++++-++|..+.+
T Consensus 296 -----iv~~-~~~G-~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 296 -----IIKP-GLNG-ELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIER-------FYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred -----HccC-CCce-EEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhc
Confidence 2211 4445 34 368999999999999999854 333333322 8889999999999987754
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.6e-16 Score=153.65 Aligned_cols=443 Identities=14% Similarity=0.033 Sum_probs=310.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
.-+....+|..|+.+++-....+... ...-.++|.|++.+|+|++|+..|+-+...+..+++.+..++-+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34667889999999998877555433 36678899999999999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (922)
|...-.++ |+++-....+-.+..+.++-++-...-+.. + +..+-...++.+.+..-.+++|++.|.+.+..+
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~L-q---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSL-Q---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHH-h---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98876664 566666666666667777765544433333 2 233556778888888889999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHH
Q 002431 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245 (922)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 245 (922)
|+.......++.+|++..-++-+.+.+.-.++..|+++-+.+.++....+.=+-..|......+....... +-.+.-
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---YPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---chhHHH
Confidence 99888888999999999999999999999999999998888888777766544334444333333221110 111111
Q ss_pred HHH-----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 246 YYE-----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 246 ~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
+++ -.+-+.|++.+-..++.-| ++..+++..|.++++..+|..+.+. .+|..|.-+...|.+....|+-
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh
Confidence 111 1234556666666655544 4777888888888888888776654 5788888888888887777765
Q ss_pred hHHHHHHHHHHhc-------C--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH
Q 002431 321 PAAASYYKATLAV-------T--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (922)
Q Consensus 321 ~~A~~~~~~a~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (922)
....+.++-+-+. . -+.......++.+++-..++++.+.+++..-....++....++++.++...|++.+|
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHH
Confidence 4444443333221 1 122333556778888888888888888888777777788888889999999999999
Q ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHhhcccCChhhHhHHHHHHHH
Q 002431 392 IQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT-CNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 392 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
.+.|-+.-..+ .+.......|++||...|+.+-|.+.+-+. ..|...-.+ .-++..+..++.+--+.+.|++++.
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 88887766554 333445567888999999988888777543 122222222 2233344444554445566665554
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.81 E-value=6.5e-19 Score=193.85 Aligned_cols=330 Identities=12% Similarity=0.150 Sum_probs=212.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc-eEECCC------CCHHHHHHHHHh
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-FVDVSA------MSSDMIAKLINE 610 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~i~~ 610 (922)
+|.++++.+..+++...+..+.+.+.+.+++|.+++..+..... ........ ...... .....+.+.|++
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK---PPIDATIILNLNMSKNPLSFLLALWKLRKILRQ 77 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc---chhhccceEEecccccchhhHHHHHHHHHHHHh
Confidence 47788888888888899999999999889999888754322111 11111111 111111 012456788889
Q ss_pred CCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCCCcc----cEEEecCccCCcCc-c------C-CC
Q 002431 611 DKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGASYI----DYLVTDEFVSPLRY-A------H-IY 672 (922)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~~~~----d~~~~d~~~~~~~~-~------~-~~ 672 (922)
.++||++ ++.....+++ .+..|+.++..+.......... ....++.+...+.. . . ..
T Consensus 78 ~~pdiv~-----~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 152 (360)
T cd04951 78 FKPDVVH-----AHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFN 152 (360)
T ss_pred cCCCEEE-----EcccchHHHHHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCC
Confidence 9999994 4433222222 1233555554332211111101 11122222222111 0 0 12
Q ss_pred ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecC
Q 002431 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 750 (922)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 750 (922)
.+++..+|++.-..... . ........|++++++++.++++.++++ .|+.+.+++++.++.+..|+.+|+|+|+
T Consensus 153 ~~~~~~i~ng~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~ 227 (360)
T cd04951 153 ANKSFVVYNGIDTDRFR----K-DPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGD 227 (360)
T ss_pred cccEEEEccccchhhcC----c-chHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcC
Confidence 34555566533111100 0 001111256778888888887777754 5999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
|+. .+.+++.+.+.|+ .++|.|+|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+.+......-+.
T Consensus 228 g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~- 302 (360)
T cd04951 228 GPL-RATLERLIKALGL-SNRVKLLGL--RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVG- 302 (360)
T ss_pred CCc-HHHHHHHHHhcCC-CCcEEEecc--cccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEec-
Confidence 886 7788999999999 489999996 4567778999999999998888 999999999999999765543333222
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 830 SLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 830 ~~~~~~g~~~~~i~~~~~~~~~~~~~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
..|. .+...|++++++.+.++. .+++.+..++.. +... ...||++.+++++++.|+
T Consensus 303 ----~~g~--~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~--~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 303 ----DSGL--IVPISDPEALANKIDEILKMSGEERDIIGAR-RERI--VKKFSINSIVQQWLTLYT 359 (360)
T ss_pred ----CCce--EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHH--HHhcCHHHHHHHHHHHhh
Confidence 1121 122478999999999998 566777766666 5544 346999999999999996
No 84
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.81 E-value=3.1e-18 Score=188.98 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=217.0
Q ss_pred eeeeecCCCC-CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEE-CCCCCHHHHHHHHHhCCCeE
Q 002431 538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVD-VSAMSSDMIAKLINEDKIQI 615 (922)
Q Consensus 538 rig~~s~~~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~di 615 (922)
||+++++... .++++.++..+.+.+.+...++.+++............. ........ ........+.+.++..++||
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~di 79 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE-QEVVRVIVLDNPLDYRRAARAIRLSGPDV 79 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc-ccceeeeecCCchhHHHHHHHHhhcCCCE
Confidence 6899988776 567889999999999998889888876543221111000 00111111 11223466788899999999
Q ss_pred EEcCCCcCC--CCchhhhh----cCCCceEEecccc-CCCCCC--Cc---ccEEEecCccCCc-Cc-----cCCCcccee
Q 002431 616 LINLNGYTK--GARNEIFA----MQPAPIQVSYMGF-PGTTGA--SY---IDYLVTDEFVSPL-RY-----AHIYSEKLV 677 (922)
Q Consensus 616 l~~~~~~~~--~~~~~~~~----~~~apvq~~~~g~-~~t~g~--~~---~d~~~~d~~~~~~-~~-----~~~~~e~~~ 677 (922)
+|-...+.. +.....+. .+..|+.++..+. +..... .. .-+..+|.+++++ .. ...+.+++.
T Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 159 (366)
T cd03822 80 VVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIA 159 (366)
T ss_pred EEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEE
Confidence 975442111 11111111 1456887776554 211110 00 0112346666663 21 111234555
Q ss_pred ecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhH
Q 002431 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGE 755 (922)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~ 755 (922)
.+|+....... .+ ...+.+.+.+.+.+++++++++ .|+.+.+++++.++.++.|+.+|+++|.++...
T Consensus 160 ~i~~~~~~~~~--------~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~ 229 (366)
T cd03822 160 VIPHGVPDPPA--------EP--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL 229 (366)
T ss_pred EeCCCCcCccc--------CC--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch
Confidence 56543321110 00 1111233344556677777754 599999999999999999999999999875423
Q ss_pred HHHHH----HHHHcCCCCCceEEcCC-CCcHHHHHhccCCcEEecCCCCC--C-hhHHHHHHHcCCCeeeecCCcchhhh
Q 002431 756 MRLRA----YAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCN--A-HTTGTDILWAGLPMITLPLEKMATRV 827 (922)
Q Consensus 756 ~~l~~----~~~~~g~~~~rv~f~~~-~~~~~~~~~~~~~dv~l~~~~~~--g-~~t~~eal~~g~Pvv~~~~~~~~~r~ 827 (922)
..... .+++.|+ .++|.|.|. ++.++...+|+.+|+++.|+.++ | |.+++|||++|+|||+.+... ...+
T Consensus 230 ~~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i 307 (366)
T cd03822 230 ERYRGEAYALAERLGL-ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV 307 (366)
T ss_pred hhhhhhhHhHHHhcCC-CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee
Confidence 22222 3788899 589999987 89999999999999999999888 8 999999999999999765432 1111
Q ss_pred HHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 828 AGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 828 ~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
. . +-.+ ++. .|.+++++.+.++.+|++.+.+++++.++... . |+++.+++++.++|+
T Consensus 308 ~-----~-~~~g-~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 308 L-----D-GGTG-LLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred e-----e-CCCc-EEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1 1 2333 443 57999999999999999999999999988763 3 999999999998873
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=166.66 Aligned_cols=268 Identities=21% Similarity=0.241 Sum_probs=187.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLE---PR-------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+++..++...|-......++.+ |. +..-...+|.||++.|-+.+|.+.++..++..|. ++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHH
Confidence 4555666666665554444332 11 2233356778888888888888888887776654 67777778888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
.+..+...|+..+.+.++..|.++..+...+.++...++.++|.++|+.+++.+|.+.++.-.++..|+-.++.+-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 88888888888888888777877777777788888888888888888888887777777777777777777777778888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
|+++++..-.+++.+.++|.+....++++-++..|++++... |+ ..+|++++.+....|++..|...|+-++..++
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 888777777777777777777777777777777777777642 22 55666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
++.+++.+++..-.+.|+.++|..+++.+....|+-.+..+++
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 6666666666666666666666666666666666554444443
No 86
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.80 E-value=3.8e-18 Score=186.77 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=143.7
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--------HHHHHHHHHHcCCCCCce
Q 002431 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--------EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--------~~~l~~~~~~~g~~~~rv 772 (922)
.|+.+|++++..+++.++|+ .|+.+.++++|.++.++.|+.+|+|+|+|+.. .+.+++.+.++| ++|
T Consensus 183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v 259 (380)
T PRK15484 183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRC 259 (380)
T ss_pred HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcE
Confidence 57788998777788877775 59999999999999999999999999987531 124455555544 579
Q ss_pred EEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc-c--cCCHH
Q 002431 773 IFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I--VNSMK 847 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~-i--~~~~~ 847 (922)
+|+|.++..+...+|+.+|+++.|+.+ +| |++++|||+||+|||+.....+.+-+.. |..+ + + ..|++
T Consensus 260 ~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~------~~~G-~~l~~~~d~~ 332 (380)
T PRK15484 260 IMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLE------GITG-YHLAEPMTSD 332 (380)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhccc------CCce-EEEeCCCCHH
Confidence 999999999999999999999999875 78 9999999999999997654433332211 4444 3 3 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 848 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 848 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++++.+.++++|++. .+++++.++.. ...|+++.+++++++.|+..
T Consensus 333 ~la~~I~~ll~d~~~-~~~~~~ar~~~--~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 333 SIISDINRTLADPEL-TQIAEQAKDFV--FSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Confidence 999999999999985 67888888765 34699999999999999654
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.80 E-value=4.1e-19 Score=198.43 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=135.4
Q ss_pred CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH--HhhCCCeEEEEecCChhh----------HHHHHHHHHHcCCCCCc
Q 002431 706 DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI--LRRVPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQ 771 (922)
Q Consensus 706 ~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r 771 (922)
+++++++.+++++++|+ .|+.+.++++++++ ++..++.. +++|+|+.. .+.+...+.+.|+ .++
T Consensus 241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~ 318 (439)
T TIGR02472 241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGK 318 (439)
T ss_pred hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-Cce
Confidence 45566666788888876 59999999999864 23334433 356776531 1234556788899 599
Q ss_pred eEEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--C
Q 002431 772 IIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (922)
Q Consensus 772 v~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~ 844 (922)
|+|+|.++..+...+|+.+ |+||.||.++| |++++|||+||+|||+........-+. -|.++ +++ .
T Consensus 319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~------~~~~G-~lv~~~ 391 (439)
T TIGR02472 319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIA------NCRNG-LLVDVL 391 (439)
T ss_pred EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhc------CCCcE-EEeCCC
Confidence 9999999888998888876 99999999999 999999999999999655433332221 13444 443 5
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 845 ~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|++++++.+.++.+|++.+++++++.+++. ...||++.+++++++..
T Consensus 392 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~--~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 392 DLEAIASALEDALSDSSQWQLWSRNGIEGV--RRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHh
Confidence 899999999999999999999999999876 44699999999988764
No 88
>PLN02939 transferase, transferring glycosyl groups
Probab=99.80 E-value=3e-18 Score=194.55 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=141.6
Q ss_pred CCcCCCCCCC---CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--HHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPE---DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~---~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f 774 (922)
.+|+++||+. +.++||+++|+ .|+.+.+++++.+++. ++.+|+|+|+|+.. ...++..+.++++ .++|.|
T Consensus 765 aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~F 841 (977)
T PLN02939 765 ALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRL 841 (977)
T ss_pred HHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEE
Confidence 3788999984 46899999987 4999999999998875 57899999998642 3678888899999 589999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH---HHHHhcCCCCcccc--CCHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMIV--NSMKE 848 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~---~~~~~~g~~~~~i~--~~~~~ 848 (922)
+|..+......+|+.+|+||.||.+++ |+|.+|||++|+|+|+........-|.. ..+..-|.++ ++. .|+++
T Consensus 842 lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NG-fLf~~~D~ea 920 (977)
T PLN02939 842 ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNG-FTFLTPDEQG 920 (977)
T ss_pred EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCce-EEecCCCHHH
Confidence 998766555678999999999999999 9999999999988884322211111100 0000002223 332 47888
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 849 YEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 849 ~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
++.++.++. .|++.+.+++++... ..|+++.++++++++|+.++.+
T Consensus 921 La~AL~rAL~~~~~dpe~~~~L~~~am~-----~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 921 LNSALERAFNYYKRKPEVWKQLVQKDMN-----IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHh
Confidence 887777655 478988888875432 3499999999999999999865
No 89
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.79 E-value=1.2e-18 Score=192.06 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=136.6
Q ss_pred EEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 715 IFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 715 ~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
+++.+++ ..|+++.+++++.++.++.|+.+|+++|+|+. .+.++..+.++|+ .++|.|.|.++.++...+|+.+|+
T Consensus 190 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 190 RILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL-LAALEALARALGL-GGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred EEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH-HHHHHHHHHHcCC-CCeEEECCCCCHHHHHHHHHhCCE
Confidence 4444443 56999999999999999999999999999876 6789999999999 589999999999999999999999
Q ss_pred EecCCC------CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHH
Q 002431 793 FLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKL 863 (922)
Q Consensus 793 ~l~~~~------~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~ 863 (922)
++.|+. .+| |++++|||++|+|||+.+......-+. . |-.+ ++. .|++++++.+.++..|++.+
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~-----~-~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~ 340 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVE-----D-GETG-LLVPEGDVAALAAALGRLLADPDLR 340 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhhee-----c-CCee-EEECCCCHHHHHHHHHHHHcCHHHH
Confidence 999975 466 999999999999999766544333221 1 2223 333 48999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 864 QALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
.+++.+.++.+ ...|+++.+++++++
T Consensus 341 ~~~~~~a~~~~--~~~~s~~~~~~~l~~ 366 (367)
T cd05844 341 ARMGAAGRRRV--EERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHH--HHHCCHHHHHHHHhc
Confidence 99999988876 346999999998875
No 90
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.79 E-value=4.3e-18 Score=188.68 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=136.7
Q ss_pred CcCCCCCCCCcEEEEecCC---CCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--------hHHHHHHHHHHcCC--CC
Q 002431 703 KRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRLRAYAVAQGV--QP 769 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l~~~~~~~g~--~~ 769 (922)
.+...+++++.++++.++| ..|+.+.+++++.++.++.|+.+|+|+|++.. +....+...++.+. +.
T Consensus 201 ~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 280 (396)
T cd03818 201 LPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDL 280 (396)
T ss_pred ccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCc
Confidence 3444456666677777765 36999999999999999999999999996321 11122333344442 34
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCH
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM 846 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~ 846 (922)
++|+|+|.++..+...+|+.+|+++.|+..+| |++++|||+||+|||+.+......-+.. |.++ +++ .|+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~------~~~G-~lv~~~d~ 353 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITD------GENG-LLVDFFDP 353 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhccc------CCce-EEcCCCCH
Confidence 89999999999999999999999999987777 9999999999999997665444333321 4455 443 589
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 847 KEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 847 ~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
+++++++.++.+|++.+.+++++.++... ..|+++.+++++.
T Consensus 354 ~~la~~i~~ll~~~~~~~~l~~~ar~~~~--~~fs~~~~~~~~~ 395 (396)
T cd03818 354 DALAAAVIELLDDPARRARLRRAARRTAL--RYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhccHHHHHHHHh
Confidence 99999999999999999999999999873 3699888877653
No 91
>PLN02316 synthase/transferase
Probab=99.79 E-value=3.7e-18 Score=198.07 Aligned_cols=338 Identities=11% Similarity=-0.003 Sum_probs=212.4
Q ss_pred cccceeeeecCCCC----CChhHhhhhHHhhcCCCCCeEEEEEecCCCCC--hHHHHHHHh----------------c--
Q 002431 534 LRRLRVGYVSSDFG----NHPLSHLMGSVFGMHNKENVEVFCYALSPNDG--TEWRQRTQS----------------E-- 589 (922)
Q Consensus 534 ~~~~rig~~s~~~~----~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~----------------~-- 589 (922)
..+|||.+||+.+. .++.+.++..|-+.+.+.+.+|.++...-... .... .+.. .
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 663 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVK-DLHYQRSYSWGGTEIKVWFGKVE 663 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcc-cceEEEEeccCCEEEEEEEEEEC
Confidence 45699999998863 35677899999999988889999988653210 0000 0100 0
Q ss_pred cC--ceEECC-CC---------CH---------HHHHHHHHh--CCCeEEEcCCCcCCCCchhhhh-----------cCC
Q 002431 590 AE--HFVDVS-AM---------SS---------DMIAKLINE--DKIQILINLNGYTKGARNEIFA-----------MQP 635 (922)
Q Consensus 590 ~~--~~~~~~-~~---------~~---------~~~~~~i~~--~~~dil~~~~~~~~~~~~~~~~-----------~~~ 635 (922)
+. .+++-. ++ .| ..+.+.++. .++||+ |+|.....+.+ ...
T Consensus 664 GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDII-----HaHDW~talva~llk~~~~~~~~~~ 738 (1036)
T PLN02316 664 GLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDII-----HCHDWSSAPVAWLFKDHYAHYGLSK 738 (1036)
T ss_pred CcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEE-----EECCChHHHHHHHHHHhhhhhccCC
Confidence 00 111111 01 11 123455543 489999 77755332221 123
Q ss_pred CceEEeccccCCCCCCCccc--EEEecCccCCcCcc----------CCCccceeecCCccccCCCcccc-ccC---CCC-
Q 002431 636 APIQVSYMGFPGTTGASYID--YLVTDEFVSPLRYA----------HIYSEKLVHVPHCYFVNDYKQKN-MDV---LDP- 698 (922)
Q Consensus 636 apvq~~~~g~~~t~g~~~~d--~~~~d~~~~~~~~~----------~~~~e~~~~lp~~~~~~~~~~~~-~~~---~~~- 698 (922)
.|+..|..+.. .+...+- ...+|.+++.+... ....+++..+|++.-...+.+.. +.. +.+
T Consensus 739 ~p~V~TiHnl~--~~~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~ 816 (1036)
T PLN02316 739 ARVVFTIHNLE--FGANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSE 816 (1036)
T ss_pred CCEEEEeCCcc--cchhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCch
Confidence 58888764421 1111110 11234444443320 11235677777654332211110 000 000
Q ss_pred --------CCCCCcCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh--HHHHHHHHHHc
Q 002431 699 --------NCQPKRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQ 765 (922)
Q Consensus 699 --------~~~~~r~~~~l~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~ 765 (922)
....+|+++||+. +.+++++++|+ .|+.+.+++++.++++ ++++|+|+|+||.. ...+++++.++
T Consensus 817 ~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~L 894 (1036)
T PLN02316 817 NVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQL 894 (1036)
T ss_pred hhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 0112678899984 67899999987 4999999999999886 47899999988642 46788889988
Q ss_pred CCC-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc---
Q 002431 766 GVQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE--- 840 (922)
Q Consensus 766 g~~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~--- 840 (922)
|+. +++|.|.|..+..--..+|+.+|+||.||.+++ |+|.+|||++|+|+|+ +++| |++|.
T Consensus 895 g~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d 960 (1036)
T PLN02316 895 HSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFD 960 (1036)
T ss_pred CccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhccc
Confidence 873 579999886433322357999999999999999 9999999999988883 4444 44440
Q ss_pred -----------------ccc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 841 -----------------MIV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 841 -----------------~i~--~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
++. .|++++..++.+++.+ ++.+..+++..+..+ ...|+++++|++++++|+++.
T Consensus 961 ~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m--~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 961 VDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVM--EQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred cccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHHh
Confidence 232 2688888888888776 355555666666655 446999999999999998864
No 92
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.79 E-value=2.6e-18 Score=187.88 Aligned_cols=319 Identities=14% Similarity=0.175 Sum_probs=205.5
Q ss_pred eeeeecCCCC-CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEEC----------CCCCHHHHHH
Q 002431 538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----------SAMSSDMIAK 606 (922)
Q Consensus 538 rig~~s~~~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 606 (922)
||+++++.+. .+++...+..+.+.+.+.+++|.+++........ .. +.. ...+..+ .......+.+
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YE-LDP-KIKVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cc-cCC-ccceeecccccccchhccccchHHHHH
Confidence 6889998888 7777788888999988778999998876543110 00 111 1111111 1123467889
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc-------EEEecCccCCcCccC-----CCcc
Q 002431 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID-------YLVTDEFVSPLRYAH-----IYSE 674 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d-------~~~~d~~~~~~~~~~-----~~~e 674 (922)
.++..++|++|...++. ..-+..+..+..|+.+...+.+......... +..+|.+++++.... ....
T Consensus 78 ~l~~~~~d~i~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~ 156 (348)
T cd03820 78 LLKNNKPDVVISFLTSL-LTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNK 156 (348)
T ss_pred hhcccCCCEEEEcCchH-HHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCC
Confidence 99999999997555441 1111222222225544433322211111000 113344444444321 1222
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCCh
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (922)
++..+|+..-. ....+ . .+.+.++|+++++ ..|+.+.++++|.++.+..|+.+|+++|.++
T Consensus 157 ~~~vi~~~~~~--------~~~~~----~-----~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~ 219 (348)
T cd03820 157 NVVVIPNPLPF--------PPEEP----S-----SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP 219 (348)
T ss_pred CeEEecCCcCh--------hhccc----c-----CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 33333322110 00000 0 1233455555554 4699999999999998889999999999887
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
. ...+++.+.+.|+ .++|.|.|. .++...+|+.+|+++.|+.++| |++++|||++|+|||+.+.......+
T Consensus 220 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~---- 291 (348)
T cd03820 220 E-REALEALIKELGL-EDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEI---- 291 (348)
T ss_pred C-HHHHHHHHHHcCC-CCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhh----
Confidence 6 7788888899999 589999998 6788888999999999998888 99999999999999986543222211
Q ss_pred HHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 832 CLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 832 ~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
..-|..+ ++. .|++++++.+.++..|++.+++++++.++... .|+++.++++++
T Consensus 292 -~~~~~~g-~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 347 (348)
T cd03820 292 -IEDGVNG-LLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE---RFSIENIIKQWE 347 (348)
T ss_pred -hccCcce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---HhCHHHHHHHhc
Confidence 1113233 443 46799999999999999999999999876543 399999887764
No 93
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.78 E-value=3.6e-18 Score=190.53 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC
Q 002431 702 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~ 779 (922)
..|+++|++++.++++.++++ .|+.+.+++++.++ +..|+.+|+|+|+|+. .+.+++.++++|++ +|.|+|.++
T Consensus 218 ~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~--~v~f~G~~~ 293 (412)
T PRK10307 218 ALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQGGG-KARLEKMAQCRGLP--NVHFLPLQP 293 (412)
T ss_pred HHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCChh-HHHHHHHHHHcCCC--ceEEeCCCC
Confidence 367789999888888888876 59999999999876 5578999999999986 78899999999993 799999999
Q ss_pred cHHHHHhccCCcEEecCCCCCC-----hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHH
Q 002431 780 KQEHIRRSSLADLFLDTPLCNA-----HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERA 853 (922)
Q Consensus 780 ~~~~~~~~~~~dv~l~~~~~~g-----~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~ 853 (922)
.++...+|+.+||++.|+..++ ++.++|||+||+|||+...... .+ ..++. + .+.++. .|++++++++
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~-~~~i~--~-~G~~~~~~d~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--EL-GQLVE--G-IGVCVEPESVEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hH-HHHHh--C-CcEEeCCCCHHHHHHHH
Confidence 9999999999999999987665 4457899999999997643210 00 12232 3 331332 5899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 854 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.+|.+|++.+.+++++.++.. ...||++.+++++++.|+++..
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~--~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYA--ERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHHcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999876 3469999999999999998764
No 94
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.78 E-value=5.3e-18 Score=187.61 Aligned_cols=331 Identities=15% Similarity=0.115 Sum_probs=210.6
Q ss_pred eeeeecCCC--CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHh----ccC------ceEECCCCCHHHHH
Q 002431 538 RVGYVSSDF--GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQS----EAE------HFVDVSAMSSDMIA 605 (922)
Q Consensus 538 rig~~s~~~--~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~ 605 (922)
||.++++.+ ..++....+..+.+.+.+.+++|++++............... ... ..............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 588888888 345566788888888888889999988754432211110000 000 00000000112234
Q ss_pred HHHHhCCCeEEEcCCCcCCCCc--hhh----hh-cCCCceEEeccccCCCCC--CCcc----cE--------EEecCccC
Q 002431 606 KLINEDKIQILINLNGYTKGAR--NEI----FA-MQPAPIQVSYMGFPGTTG--ASYI----DY--------LVTDEFVS 664 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~--~~~----~~-~~~apvq~~~~g~~~t~g--~~~~----d~--------~~~d~~~~ 664 (922)
......++||+ |+++.. ... .+ ..-.|+.++..|...... .... .. .-++.+..
T Consensus 81 ~~~~~~~~dii-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 81 LRLNIREADIV-----HVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHHhCCCCCEE-----EEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEE
Confidence 44556789999 444321 111 11 133577766544422111 0000 00 11222333
Q ss_pred CcCc------cCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002431 665 PLRY------AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI 736 (922)
Q Consensus 665 ~~~~------~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i 736 (922)
.+.. .....+++..+|++.-.... ...+. ...|..++.+++.++++.++++ .|+.+.++++|.++
T Consensus 156 ~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 228 (375)
T cd03821 156 TSEQEAAEIRRLGLKAPIAVIPNGVDIPPF------AALPS-RGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKL 228 (375)
T ss_pred CCHHHHHHHHhhCCcccEEEcCCCcChhcc------Ccchh-hhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHh
Confidence 3211 11233445555543221111 01111 1125667788888888888875 59999999999999
Q ss_pred HhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC
Q 002431 737 LRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP 814 (922)
Q Consensus 737 l~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P 814 (922)
.++.|+.+|+++|.++.. ...++..+.+.|+ .++|.|.|.++.++...+|..+|+++.|+.++| |++++|||+||+|
T Consensus 229 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~P 307 (375)
T cd03821 229 AERFPDWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTP 307 (375)
T ss_pred hhhcCCeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCC
Confidence 998999999999976442 3445555688899 589999999999999999999999999998888 9999999999999
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
||+.+......-+. . +..- ++..+++++++++.++.+|++.+..++++.++.. ...|+++.++++++
T Consensus 308 vI~~~~~~~~~~~~-----~-~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 374 (375)
T cd03821 308 VVTTDKVPWQELIE-----Y-GCGW-VVDDDVDALAAALRRALELPQRLKAMGENGRALV--EERFSWTAIAQQLL 374 (375)
T ss_pred EEEcCCCCHHHHhh-----c-CceE-EeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 99877655444333 1 2222 4456779999999999999999999999998875 34699999998875
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=7e-17 Score=149.79 Aligned_cols=205 Identities=26% Similarity=0.240 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
..+...+|.-|++.|++..|.+.++++++.+|++..+|..++..|.+.|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
.+|++++|...|++++.. .+....++.++|.|..+.|+++.|...|+++++.+|+.+.....++...++.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888764 245667788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 237 (922)
++++.....+...+.+...+.+-...|+-+.+-++=.++....|...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 88888777777777777777788888888888877777777777743
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-15 Score=148.24 Aligned_cols=292 Identities=20% Similarity=0.221 Sum_probs=187.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAY 111 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 111 (922)
+..|.-+.-.++.++|++.|..+++.+|...++...+|+.|.+.|..+.|+.+-+..++ .|+ ...+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44455555566677777777777777777777777777777777777777776665554 333 133566677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGLFMESGDLN 186 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 186 (922)
+..|-++.|...|....+...--..+...+..+|....++++|++.-++..+..+.. +..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 777777777777777666555555666677777777777777777777666665543 345666777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
.|...+.++++.+|+...+-..+|+++...|+++.|++.++.+++.+|+ +++...+..+|...|+.++....+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777776 66667777777777777777777777776
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH---cCChhHHHHHHHHHH
Q 002431 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME---WNMLPAAASYYKATL 331 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~ 331 (922)
..++.. +-..++.......-.+.|..++.+-+...|+--. .+.+...... .|...+....++.++
T Consensus 278 ~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 278 TNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHH
Confidence 665543 4444555555555566666666666666665332 2223222221 233455555555544
No 97
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.78 E-value=5.5e-18 Score=190.56 Aligned_cols=184 Identities=17% Similarity=0.094 Sum_probs=132.4
Q ss_pred CcCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceEE-cCC
Q 002431 703 KRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIF-TDV 777 (922)
Q Consensus 703 ~r~~~~l~~-~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~f-~~~ 777 (922)
+|+++|+++ +.++++.++|+ .|+.+.+++++.++++. +.+|+|+|+|+. ..+.+++.++++| ++|.| .|.
T Consensus 271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~ 345 (466)
T PRK00654 271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY 345 (466)
T ss_pred HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC
Confidence 578899985 67888888876 59999999999998764 689999998753 2567888888876 35654 565
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
+.+....+|+.+|+||.||.++| |++.+|||++|+|+|+........-+...--..-+-++ ++. .|++++++++.
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G-~lv~~~d~~~la~~i~ 423 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATG-FVFDDFNAEDLLRALR 423 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 43444567999999999999999 99999999999999954322222211100000000222 332 48889988888
Q ss_pred HHhc---CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 855 SLAL---DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 855 ~l~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
+++. |++.+.+++++..+ ..|++++++++++++|++++.
T Consensus 424 ~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 424 RALELYRQPPLWRALQRQAMA-----QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHhcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHhh
Confidence 7765 67767777665543 359999999999999998864
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=173.84 Aligned_cols=229 Identities=20% Similarity=0.307 Sum_probs=131.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSN-------LASAYMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A 154 (922)
.+|..++.+-+...|.....-.. ..........+..-.+.|-.+....| .++++...||.+|...|+|++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 66666666665554432110000 00000011112233344444444444 4556666666666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
+.+|+.++...|++...|+.||..+....+.++|+..|.+++++.|....+++++|..+..+|.|++|.++|-.++.+
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666655554
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.4e-16 Score=166.95 Aligned_cols=231 Identities=20% Similarity=0.128 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEP----RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
+..+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345555566656654322 1245566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
.|+++++++|++..++..+|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 66666666666666666666666666666666666666666666554211 11112233455666666665544332211
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAY 273 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~ 273 (922)
.+. .+......|+..++ ..++.+. +..|. ..+|+.+|.++...|++++|+.+|++++..+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23333344444332 1222222 22222 45666777777777777777777777776664 555555
Q ss_pred HHHHHHHHH
Q 002431 274 NNLGNALKD 282 (922)
Q Consensus 274 ~~l~~~~~~ 282 (922)
+.+......
T Consensus 275 ~~~~e~~~~ 283 (296)
T PRK11189 275 YALLELALL 283 (296)
T ss_pred HHHHHHHHH
Confidence 544444433
No 100
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=7.8e-17 Score=168.89 Aligned_cols=229 Identities=18% Similarity=0.129 Sum_probs=164.1
Q ss_pred CChHHHHHHHHHHHhhC---CC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTR---PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
+..+.++..+.+++... |. ...++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777777777532 22 56677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
.|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 88888888888888888888888888888888888888888888776321 11223345678888888887766543222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAI-------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP-DFPEAT 443 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 443 (922)
.+. .+.+...+|+..++ ..++.+. ++.|...++|+.+|.++.+.|++++|+.+|+++++.+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 121 34555556665443 2333333 45566778999999999999999999999999999986 666666
Q ss_pred HHHHHhh
Q 002431 444 CNLLHTL 450 (922)
Q Consensus 444 ~~l~~~~ 450 (922)
+.++...
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 6555443
No 101
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.78 E-value=7.5e-18 Score=187.19 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=143.8
Q ss_pred CcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEc-C
Q 002431 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFT-D 776 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~-~ 776 (922)
.+.++|++++.++++.++|+ .|+.+.+++++.++. ++.+|+++|+|+.. .+.+++.+..++...++|+|. |
T Consensus 191 ~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (388)
T TIGR02149 191 VLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK 267 (388)
T ss_pred HHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC
Confidence 67788998888888888876 499999999998874 46778887765432 356777777777754667765 6
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCH------H
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM------K 847 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~------~ 847 (922)
.++..+...+|+.+||+|.|+.++| |++++|||++|+|||+.+......-+. -|..+ ++. .|. +
T Consensus 268 ~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~------~~~~G-~~~~~~~~~~~~~~~ 340 (388)
T TIGR02149 268 MLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVV------DGETG-FLVPPDNSDADGFQA 340 (388)
T ss_pred CCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhh------CCCce-EEcCCCCCcccchHH
Confidence 7889999999999999999998888 999999999999999765443332221 13334 333 345 7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 848 EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 848 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
++++.+.++..|++.+++++++.++.. ...|+++.+++++.+.|++++
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA--EEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999988865 335999999999999998763
No 102
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.77 E-value=1.7e-18 Score=191.16 Aligned_cols=338 Identities=14% Similarity=0.162 Sum_probs=221.7
Q ss_pred eeeeecCCCCCC--hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc---eEECC-----CCCHHHHHHH
Q 002431 538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH---FVDVS-----AMSSDMIAKL 607 (922)
Q Consensus 538 rig~~s~~~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~ 607 (922)
||.+++..+..+ +...++..+.+.+.+.+++|.+++................... +.... ......+.+.
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 577888776554 5567888999999888899999887654332111100000000 00000 0113457788
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCC-------------cccEEEecCccCCcCcc-----
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS-------------YIDYLVTDEFVSPLRYA----- 669 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~-------------~~d~~~~d~~~~~~~~~----- 669 (922)
++..++||++....+...........+..|+.+...+........ ..-+..+|.+++++...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 888999999655555433322122234467777665543221100 00011334455454431
Q ss_pred CCCc---cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeE
Q 002431 670 HIYS---EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA 744 (922)
Q Consensus 670 ~~~~---e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 744 (922)
..+. .++..+|+...... ..+.....+...+.+.+.++++.+++. .|+.+.++++|..+.+..|+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~ 232 (374)
T cd03801 161 ELGGVPPEKITVIPNGVDTER--------FRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVR 232 (374)
T ss_pred hcCCCCCCcEEEecCcccccc--------cCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeE
Confidence 1121 24444443221110 100001122334445566777777764 6999999999999999889999
Q ss_pred EEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 745 LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 745 l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
|+++|.++. ...++..+.+.+. .++|.|.|.++.++...+++.+|+++.|+.++| |++++|||++|+|||+.....+
T Consensus 233 l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 233 LVIVGDGPL-REELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred EEEEeCcHH-HHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh
Confidence 999997765 7788888888899 589999999999999999999999999988877 9999999999999998886555
Q ss_pred hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
...+.. |-.. ++. .|++++++.+.++..|++.+.++++..++.. ...|+++.+++++.+.|+
T Consensus 311 ~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 311 PEVVED------GETG-LLVPPGDPEALAEAILRLLDDPELRRRLGEAARERV--AERFSWDRVAARTEEVYY 374 (374)
T ss_pred hHHhcC------Ccce-EEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHhhC
Confidence 444331 2333 343 3479999999999999999999999988655 345999999999998873
No 103
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.77 E-value=6.4e-18 Score=186.36 Aligned_cols=309 Identities=16% Similarity=0.138 Sum_probs=200.8
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEE
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQIL 616 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil 616 (922)
|||.+++.....++++.....+.+.+.+.+.||.+++.... .+.+.++..++||+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 68899987766677788888888888888889988885422 44556677888888
Q ss_pred EcCCCcCCCCchhhhhc--CCCceEEecccc-CCCCCC----------------------CcccE-------------EE
Q 002431 617 INLNGYTKGARNEIFAM--QPAPIQVSYMGF-PGTTGA----------------------SYIDY-------------LV 658 (922)
Q Consensus 617 ~~~~~~~~~~~~~~~~~--~~apvq~~~~g~-~~t~g~----------------------~~~d~-------------~~ 658 (922)
+-...+........+.. +..|+.++..+. +.+.+. +.+++ ..
T Consensus 56 h~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADL 135 (365)
T ss_pred EEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Confidence 43222222222212211 245777664332 111110 00000 01
Q ss_pred ecCccCCcCccCCC--------ccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEE--EEecCCC--CCC
Q 002431 659 TDEFVSPLRYAHIY--------SEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFI--FACFNQL--YKM 725 (922)
Q Consensus 659 ~d~~~~~~~~~~~~--------~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~--~~~~~~~--~K~ 725 (922)
++.+++++.....+ ..++..+|++.- .....+ .....+..++++++..+ |++.... .|+
T Consensus 136 ~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~ 207 (365)
T cd03825 136 NLTIVAPSRWLADCARSSSLFKGIPIEVIPNGID--------TTIFRPRDKREARKRLGLPADKKIILFGAVGGTDPRKG 207 (365)
T ss_pred CcEEEehhHHHHHHHHhccccCCCceEEeCCCCc--------ccccCCCcHHHHHHHhCCCCCCeEEEEEecCCCccccC
Confidence 12233333321111 123333333211 111111 11225667788776544 4455444 799
Q ss_pred CHHHHHHHHHHHhh-CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC-cHHHHHhccCCcEEecCCCCCC-h
Q 002431 726 DPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM-KQEHIRRSSLADLFLDTPLCNA-H 802 (922)
Q Consensus 726 ~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~-~~~~~~~~~~~dv~l~~~~~~g-~ 802 (922)
.+.++++|..+.++ .|+.+++++|.++. ... .++ .++|.|+|.++ .++...+|+.+|+++.|+.++| |
T Consensus 208 ~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-~~~-------~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g 278 (365)
T cd03825 208 FDELIEALKRLAERWKDDIELVVFGASDP-EIP-------PDL-PFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFP 278 (365)
T ss_pred HHHHHHHHHHhhhccCCCeEEEEeCCCch-hhh-------ccC-CCceEecCCcCCHHHHHHHHHhCCEEEecccccccc
Confidence 99999999987665 68899999998754 211 156 47899999988 6778888999999999998888 9
Q ss_pred hHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 803 TTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 803 ~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
++++|||++|+|||+.....+..-+.. +.++ ++. .|.+++++++.++..|++.+.+++++.++.. ...|
T Consensus 279 ~~~~Eam~~g~PvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~ 349 (365)
T cd03825 279 NTAIEALACGTPVVAFDVGGIPDIVDH------GVTG-YLAKPGDPEDLAEGIEWLLADPDEREELGEAARELA--ENEF 349 (365)
T ss_pred HHHHHHHhcCCCEEEecCCCChhheeC------CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhc
Confidence 999999999999997765544443331 2234 443 3789999999999999999999999998876 3469
Q ss_pred ChHHHHHHHHHHHHHH
Q 002431 881 DTARWVKNLERSYFKM 896 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~ 896 (922)
+.+.++++++++|+++
T Consensus 350 s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 350 DSRVQAKRYLSLYEEL 365 (365)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999999763
No 104
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=1.5e-16 Score=147.64 Aligned_cols=207 Identities=23% Similarity=0.179 Sum_probs=167.8
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
..+...++..|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhc--CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
.+|++++|...|++++.. .+..+.++.++|.|..++|+.+.|.++|+++++.+|+.+.....++...++.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888765 355677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.+++.....+-..+.+...+++-...|+-+.|-++=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888877777777777777778888888888888877777777876543
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.4e-15 Score=145.93 Aligned_cols=423 Identities=15% Similarity=0.097 Sum_probs=316.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.+.+|.+++..|+|++|+..|+-+.+.+.-+.+.+..++.|++-+|.|.+|.....++ |+++-....+-....+.+
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 3578999999999999999999998877677899999999999999999998876654 666666666666667777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+-++-.. |.+.+. +..+-...++.+.+..-.|.+|+.+|++++.-+|+.......++.+|.+..-++-+.+.+.--
T Consensus 136 dEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 136 DEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred cHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 7554433 444333 223455677888888889999999999999999998888899999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHH
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFG 240 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 240 (922)
++..|+++.+.+..+...++.=+-..|..-.+...... ...+.+-..+-.-+.-..+-+.|++.+-.+++.-| ++..
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARl 289 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARL 289 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hhhh
Confidence 99999999999988888877655555555555443322 12222211111111112344667777766665544 5677
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCC------CChHHHHhHH
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC---LSLQP------SHPQALTNLG 311 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~~~p------~~~~~~~~la 311 (922)
+++..|.++++..+|..+.+. .+|..+.-|...|.+....|+-....+.++-+ +++-. +...-...++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 888899999999999887764 68888888888898888888765544444433 22211 2223455677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHhCCHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP-LAADGLVNRGNTYKEIGRVTD 390 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 390 (922)
.+++-..++++.+.++........++....++++.+++..|++.+|.++|-+.-...- +.......++.||...|+.+.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 7788888999999999988888888888899999999999999999999987765442 334455678999999999999
Q ss_pred HHHHHHHHHhhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 391 AIQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 391 A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
|-..+-+.- .|.+ -..+..++..+.+.+++--|.+.|...-.++|.+
T Consensus 447 AW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877664421 2322 3345667888999999999999999988888875
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.77 E-value=5.3e-18 Score=187.41 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred eeeeecCCCCCC-hhHhhhhHHhhcCCCC--CeEEEEEecCCCCCh-HH----HHHHHhcc---CceEEC--C-------
Q 002431 538 RVGYVSSDFGNH-PLSHLMGSVFGMHNKE--NVEVFCYALSPNDGT-EW----RQRTQSEA---EHFVDV--S------- 597 (922)
Q Consensus 538 rig~~s~~~~~h-~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~-~~----~~~~~~~~---~~~~~~--~------- 597 (922)
-|||+=++.+.+ +..+++......+.+. +.+|.+|+....... .. .+.+.... ..++.+ .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 378999999888 5557766666665554 689999987654321 11 11121110 011111 1
Q ss_pred CCC-----------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCC---------CCCC-----
Q 002431 598 AMS-----------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPG---------TTGA----- 651 (922)
Q Consensus 598 ~~~-----------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~---------t~g~----- 651 (922)
.+. .....+.+...++||+|+..|+..+ .++... ..+|+ +.+..+|. .+|.
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~--~~~~~~~~~~~~-i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT--YPLVRLLGGCPV-GAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccH--HHHHHHhcCCeE-EEEecCCcchHHHHHHHhhccccccC
Confidence 111 0112233335589999988776643 233332 13564 44444662 1111
Q ss_pred ----------Cc--------------ccEEEecCccCCcCccCCCccceeecC-CccccCCCccccccCCCCCCCCCcCC
Q 002431 652 ----------SY--------------IDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDYKQKNMDVLDPNCQPKRSD 706 (922)
Q Consensus 652 ----------~~--------------~d~~~~d~~~~~~~~~~~~~e~~~~lp-~~~~~~~~~~~~~~~~~~~~~~~r~~ 706 (922)
+. .-+..+|.+++++........+.+..+ ...+.+++.+..... +...
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~--~~~~----- 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELL--KLPL----- 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhc--cccc-----
Confidence 00 112356777777765332222222222 223333332211111 1000
Q ss_pred CCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCC-----eEEEEecCChh-----hHHHHHHHHHHcCCCCCceEE
Q 002431 707 YGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPN-----SALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~rv~f 774 (922)
...++.++|++++| +.|++..++++|.++.++.|+ .+|+|+|+++. ..+.|++.++++|+ .++|.|
T Consensus 232 -~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f 309 (419)
T cd03806 232 -DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEF 309 (419)
T ss_pred -ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEE
Confidence 11233456666665 569999999999999988765 89999997632 24678889999999 589999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEER 852 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~ 852 (922)
+|.++.++...+|+.+|++|.|+..+| |++++|||++|+|||+... .....-+.-. .-|-.+ +++.|+++++++
T Consensus 310 ~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~---~~g~~G-~l~~d~~~la~a 385 (419)
T cd03806 310 VVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPW---DGGPTG-FLASTAEEYAEA 385 (419)
T ss_pred ecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeecc---CCCCce-EEeCCHHHHHHH
Confidence 999999999999999999999998888 9999999999999997652 2222212100 015556 667899999999
Q ss_pred HHHHhcCHH-HHHHHHHHHHhhcccCCCCChHHHHH
Q 002431 853 AVSLALDRQ-KLQALTNKLKSVRLTCPLFDTARWVK 887 (922)
Q Consensus 853 ~~~l~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (922)
+.++.++++ .+..+++..+. . ...||.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~-~--~~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARS-S--VKRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHH-H--HHhhCHHHhcc
Confidence 999998655 44444444443 3 34599888754
No 107
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.76 E-value=8.1e-18 Score=184.67 Aligned_cols=314 Identities=13% Similarity=0.143 Sum_probs=200.9
Q ss_pred CCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC---------CHHHHHHHHHhCCCeE
Q 002431 545 DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---------SSDMIAKLINEDKIQI 615 (922)
Q Consensus 545 ~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~di 615 (922)
.+..++++.++..+.+.+.+.+++|++++.... ..+.+...+..++.+... ....+.+.+++.++||
T Consensus 6 ~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di 81 (355)
T cd03819 6 ALESGGVERGTLELARALVERGHRSLVASAGGR----LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDI 81 (355)
T ss_pred hhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc----hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCE
Confidence 344578888999999999999999998876432 233344444444433211 1245778889999999
Q ss_pred EEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC--------CccceeecCCcccc
Q 002431 616 LINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI--------YSEKLVHVPHCYFV 685 (922)
Q Consensus 616 l~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~--------~~e~~~~lp~~~~~ 685 (922)
++..+.+.. -...+.. ...|+..++.|+....+.-..-+..+|.+++++..... ..+++..+|++.-.
T Consensus 82 i~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~ 159 (355)
T cd03819 82 VHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDL 159 (355)
T ss_pred EEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccc
Confidence 954332211 1111111 23687777655532221000001123444444332111 12344444432211
Q ss_pred CCCccccccCCCCCCC------CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---
Q 002431 686 NDYKQKNMDVLDPNCQ------PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--- 754 (922)
Q Consensus 686 ~~~~~~~~~~~~~~~~------~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--- 754 (922)
. ...+... ..|+.++++++.++++.++|+ .|+.+.+++++..+.+..|+.+|+++|.++..
T Consensus 160 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~ 231 (355)
T cd03819 160 D--------RFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFY 231 (355)
T ss_pred c--------ccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchH
Confidence 1 1111111 135667788888888888875 69999999999999888889999999987542
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCC-CCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHH
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTP-LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLC 832 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~-~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~ 832 (922)
.+.+.+.+.+.++ .++|.|.|. ..+...+|..+|+++.|+ ..+| |++++|||++|+|||+.........+.
T Consensus 232 ~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~---- 304 (355)
T cd03819 232 YAELLELIKRLGL-QDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVR---- 304 (355)
T ss_pred HHHHHHHHHHcCC-cceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHh----
Confidence 2445667788898 589999998 667888899999999998 6777 999999999999999876544433332
Q ss_pred HhcCCCCccc--cCCHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcccCCCCChHH
Q 002431 833 LATGLGEEMI--VNSMKEYEERAVSL-ALDRQKLQALTNKLKSVRLTCPLFDTAR 884 (922)
Q Consensus 833 ~~~g~~~~~i--~~~~~~~~~~~~~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (922)
. |..+ ++ .+|++++++.+..+ ..|++.+.+++++.++.. ...|+.+.
T Consensus 305 -~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~--~~~f~~~~ 354 (355)
T cd03819 305 -P-GETG-LLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCV--ETLFSYDR 354 (355)
T ss_pred -C-CCce-EEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhhhhcc
Confidence 1 3334 33 35889999888544 458999999999998876 34566553
No 108
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-16 Score=158.83 Aligned_cols=264 Identities=20% Similarity=0.248 Sum_probs=161.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
.|..+++..+|.+|+..+..+++..|+++..|...+..+...|++++|.-..++.+.++|.........+.++...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34444444555555555555555555555555555555555555555555555555555444444444444444444444
Q ss_pred HHHHHHH---------------HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 119 EAAQCCR---------------QALALN---PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 119 ~A~~~~~---------------~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
+|.+.++ +.+..+ |....+-...+.++...|++++|...--..+++++.+..+++..+.+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence 4443333 221111 2223344555666666777777777666667777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPD------------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLA 243 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~ 243 (922)
..++.+.|+..|++++.++|+... .+..-|+-..+.|++.+|.+.|..++.++|+ ...|.+.+
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 777777777777777766665432 3445566667777777777777777777765 45566777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
.+....|+..+|+...+.++++++....++...|.++...++|++|.+.|+++.+...+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777777777777777777777777777777777777777777766544
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.6e-15 Score=145.65 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=210.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKE 79 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 79 (922)
.+..+.-..+.++|+..|-++++.+|...++.+.+|..+.+.|..+.|+.+-+..++. |+ ...+...+|.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3455666677788888888888888888888888888888888888888877666543 33 24567777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-----VDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A 154 (922)
.|-++.|...|....+...--..+...+..+|....++++|++.-++..+..+.. ...+..++..+....+.+.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888887776554456677778888888888888888888877776543 23566777777777788888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
...+.++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +++...+..+|...|+.++....+.++.+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888877775 4467777788888888888888888888877
Q ss_pred CChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 002431 234 PNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCL 297 (922)
Q Consensus 234 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al 297 (922)
+.......++..-....-.+.|..++.+-+...|..... +.+...... .|...+.+..+.+++
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf-~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF-HRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH-HHHHHhhhccccccchhhhHHHHHHHH
Confidence 777777777777777777777777777777777775433 333332222 233445555555544
No 110
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.76 E-value=1.6e-17 Score=182.96 Aligned_cols=332 Identities=10% Similarity=0.086 Sum_probs=203.9
Q ss_pred eeeeecCCC---CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC----------HHHH
Q 002431 538 RVGYVSSDF---GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----------SDMI 604 (922)
Q Consensus 538 rig~~s~~~---~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 604 (922)
||+++++++ ..++++.++..+.+.+.+.++||.+++........ . .......++.++... ...+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-E--TEYNGVRLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-c--cccCCceEEEcCCCCccchhhhHHHHHHH
Confidence 578886653 33566688999999999989999999875433221 0 111122333332110 1122
Q ss_pred HHHH-HhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCC-CCCc-----------ccEEEecCccCCcCccCC
Q 002431 605 AKLI-NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT-GASY-----------IDYLVTDEFVSPLRYAHI 671 (922)
Q Consensus 605 ~~~i-~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~-g~~~-----------~d~~~~d~~~~~~~~~~~ 671 (922)
.+.+ ...++|+++....++ ..-..++..+..|+.++..|..-.. ..+. ..+..+|.+++++.....
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKE 156 (363)
T ss_pred HHHHhccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHH
Confidence 2222 256788885444333 1112233344578888765543111 0000 012345667766654322
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+..+.+..+. .+++++.... ...+ ....+..++++++.+ ++.++|+ .|+.+.++++++++.. +.+|+++|
T Consensus 157 ~~~~~~~~~~-~~i~ngv~~~--~~~~-~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG 228 (363)
T cd04955 157 YLKEKYGRDS-TYIPYGADHV--VSSE-EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVG 228 (363)
T ss_pred HHHHhcCCCC-eeeCCCcChh--hcch-hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---CceEEEEc
Confidence 2212222222 2222222111 1111 122344556655433 3455554 6999999999987643 78999999
Q ss_pred CChhhHHHHHHHHH-HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 750 FPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 750 ~~~~~~~~l~~~~~-~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
+++. ...+.+.+. +.++ .++|+|+|.++..+...++..+|+++.|+.. +| |++++|||++|+|||+........-
T Consensus 229 ~~~~-~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~ 306 (363)
T cd04955 229 NADH-NTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV 306 (363)
T ss_pred CCCC-cchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee
Confidence 8854 444555454 6777 5899999999999999999999999999877 88 9999999999999997654433322
Q ss_pred hHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 827 VAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++ -.+ ++..+.+.+++.+.++.+|++.+..++++.++.. ...|+++.+++++++.|+
T Consensus 307 ~~--------~~g-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 307 LG--------DKA-IYFKVGDDLASLLEELEADPEEVSAMAKAARERI--REKYTWEKIADQYEELYK 363 (363)
T ss_pred ec--------CCe-eEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 22 123 3333344499999999999999999999988876 346999999999999884
No 111
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.76 E-value=5.9e-18 Score=185.85 Aligned_cols=325 Identities=14% Similarity=0.119 Sum_probs=206.2
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceE----ECCCC-CHHHHHHHHHhCC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFV----DVSAM-SSDMIAKLINEDK 612 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~i~~~~ 612 (922)
||.+++..+... ...++..+++.+.+.+++|.+++..+.................. ....+ ....+.+.+++.+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 588999887544 55778888888888899999988654332211111111111000 00000 1244667777899
Q ss_pred CeEEEcCCCcCCCCchhhhhcC--CCceEEeccccCCCCCCC--cc--cEEEecCccCCcCccCC--------Cccceee
Q 002431 613 IQILINLNGYTKGARNEIFAMQ--PAPIQVSYMGFPGTTGAS--YI--DYLVTDEFVSPLRYAHI--------YSEKLVH 678 (922)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~~~~--~apvq~~~~g~~~t~g~~--~~--d~~~~d~~~~~~~~~~~--------~~e~~~~ 678 (922)
+||++.-.++... ....+..+ ..|+.++..++....... .. -+..+|.+++++..... ..+++..
T Consensus 80 ~Dii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTPA-TVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCchH-HHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 9999433322111 11222222 246666655443221111 11 11234555555543221 2233333
Q ss_pred cCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHH
Q 002431 679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (922)
Q Consensus 679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (922)
+|++.- . ....+.. ...+.+.++++.+++ ..|+.+.+++++.++.+..|+.+|.++|.++. .+
T Consensus 159 i~~~~d------~--~~~~~~~------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~-~~ 223 (355)
T cd03799 159 VHCGVD------L--ERFPPRP------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL-RD 223 (355)
T ss_pred EeCCcC------H--HHcCCcc------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc-HH
Confidence 443211 1 0011110 112234455555655 46999999999999888889999999998876 77
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC------CC-hhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC------NA-HTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~------~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
.+++.+++.++ .++|.|.|.++.++...+|+.+|++|.|+.+ +| |++++|||++|+|||+.........+.
T Consensus 224 ~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~- 301 (355)
T cd03799 224 ELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE- 301 (355)
T ss_pred HHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh-
Confidence 88899999998 5899999999999999999999999999887 77 999999999999999766543333222
Q ss_pred HHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 830 SLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 830 ~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
. |-.+ ++. .|.+++++.+..+..|++.+..++++.++.+. ..|+++.+++++
T Consensus 302 ----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~--~~~s~~~~~~~l 355 (355)
T cd03799 302 ----D-GETG-LLVPPGDPEALADAIERLLDDPELRREMGEAGRARVE--EEFDIRKQAARL 355 (355)
T ss_pred ----C-CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhcCHHHHhhcC
Confidence 1 3234 333 38999999999999999999999999988763 369988887653
No 112
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.76 E-value=1.8e-17 Score=183.61 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=124.2
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhh------CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRR------VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 711 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
++.+++++++|+ .|+.+.+++++..+.+. .|+.+|+|+|+|+. ++.+++.++++|++ +.+.|.|+++.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~~~~~~g~~~~~~ 307 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKLK-KVTIRTPWLSAED 307 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCCC-cEEEEcCcCCHHH
Confidence 344566666764 59999999999988752 47899999999986 89999999999994 6666778899999
Q ss_pred HHHhccCCcEEecCCC---CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 783 HIRRSSLADLFLDTPL---CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~---~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
...+|+.+||++.+++ .+| |++++|||+||+|||+........ ++.. |..+ +++.|++++++++..|.+
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~e-----iv~~-~~~G-~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDE-----LVKH-GENG-LVFGDSEELAEQLIDLLS 380 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHH-----HhcC-CCCE-EEECCHHHHHHHHHHHHh
Confidence 9999999999985432 245 999999999999999765443332 2222 5566 666799999999999999
Q ss_pred C---HHHHHHHHHHHHhhc
Q 002431 859 D---RQKLQALTNKLKSVR 874 (922)
Q Consensus 859 d---~~~~~~~~~~~~~~~ 874 (922)
| ++.+.+|+++.++..
T Consensus 381 ~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 381 NFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred cCCCHHHHHHHHHHHHHhh
Confidence 9 999999999988854
No 113
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.76 E-value=5.5e-18 Score=186.86 Aligned_cols=329 Identities=11% Similarity=0.052 Sum_probs=207.2
Q ss_pred eeeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhcc--CceEEC---C--CCCHHHHHHH
Q 002431 538 RVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA--EHFVDV---S--AMSSDMIAKL 607 (922)
Q Consensus 538 rig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~--~~~~~~~~~~ 607 (922)
||++++..+.. +++++++..+++.+.+...+++++.................. ...... . ..........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 57888877765 778899999999999877777666655432221111000000 000000 0 0112345556
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEecccc-----CCCCCCC---ccc------EEEecCccCCcCccC---
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGF-----PGTTGAS---YID------YLVTDEFVSPLRYAH--- 670 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~-----~~t~g~~---~~d------~~~~d~~~~~~~~~~--- 670 (922)
+...++||+ |++......+..+..|+.++.... +...... ... ...+|.++++++...
T Consensus 81 ~~~~~~Dii-----~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~ 155 (365)
T cd03809 81 LLLLGLDLL-----HSPHNTAPLLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDL 155 (365)
T ss_pred hhhcCCCee-----eecccccCcccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHH
Confidence 666899999 555544444334456777764322 2111110 000 013355555554311
Q ss_pred --CC---ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe
Q 002431 671 --IY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (922)
Q Consensus 671 --~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~ 743 (922)
.+ .+++..+|+..-... ..+.....+...+.+.+.++++.+++. .|+.+.+++++..+.+..|+.
T Consensus 156 ~~~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~ 227 (365)
T cd03809 156 LRYLGVPPDKIVVIPLGVDPRF--------RPPPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDP 227 (365)
T ss_pred HHHhCcCHHHEEeeccccCccc--------cCCCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCC
Confidence 11 234444443221110 000000001122344455666666655 599999999999999998889
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCc
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK 822 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~ 822 (922)
+|+++|.++..........++.+. .++|.|.|.++..+...+++.+|+++.|+.++| |.+++|||++|+|||+.....
T Consensus 228 ~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 306 (365)
T cd03809 228 KLVIVGKRGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS 306 (365)
T ss_pred CEEEecCCccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC
Confidence 999999765434445555567888 589999999999999999999999999988888 999999999999999876654
Q ss_pred chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 823 MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 823 ~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
+...++. .|. .+...|.+++++.+.++..|++.+..+++..++... .|+++.+++++.
T Consensus 307 ~~e~~~~-----~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 307 LPEVAGD-----AAL--YFDPLDPEALAAAIERLLEDPALREELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred ccceecC-----cee--eeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 4443321 111 123468999999999999999999999999886543 499999998775
No 114
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.76 E-value=4.2e-17 Score=177.42 Aligned_cols=310 Identities=13% Similarity=0.042 Sum_probs=191.3
Q ss_pred ceeeeecCCC------CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC--ceEECCC--C----CHH
Q 002431 537 LRVGYVSSDF------GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--HFVDVSA--M----SSD 602 (922)
Q Consensus 537 ~rig~~s~~~------~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~----~~~ 602 (922)
|||.++++.+ ..+++..++..+.+.+.+.++||++++....... ........ .+..... . ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA---APLVPVVPEPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc---cceeeccCCCcccccchhhHhhHHHHH
Confidence 6889998876 5567778999999999988999999986543211 11111111 1110000 0 124
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhh--hhcCCCceEEeccccCCCCCCC-cccEEEecCccCCcCccCCCc---cce
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEI--FAMQPAPIQVSYMGFPGTTGAS-YIDYLVTDEFVSPLRYAHIYS---EKL 676 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~--~~~~~apvq~~~~g~~~t~g~~-~~d~~~~d~~~~~~~~~~~~~---e~~ 676 (922)
.+.+.+++.++||+ |+++..... ...+..|+..+..+........ .......+.+++++....... .++
T Consensus 78 ~~~~~~~~~~~Div-----h~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIV-----HNHSLHLPLPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPLPWV 152 (335)
T ss_pred HHHHHHhcCCCCEE-----EecCcccchhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccccccc
Confidence 56788888999999 666554433 2223358877765554322111 001112233333333211111 223
Q ss_pred eecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC--CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN--QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
..+|++. +. ....+ . +.+..+++.++ ...|+.+.++++..+ ++.+|+++|.++.
T Consensus 153 ~vi~ngv------d~--~~~~~--~--------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~- 208 (335)
T cd03802 153 ATVHNGI------DL--DDYPF--R--------GPKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD- 208 (335)
T ss_pred EEecCCc------Ch--hhCCC--C--------CCCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC-
Confidence 3333322 11 11111 0 11122333334 457999999987543 4789999998865
Q ss_pred HHHHHHHHHHcC-CCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-CC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 755 EMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 755 ~~~l~~~~~~~g-~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
.+.+.....+.. + .++|.|.|.++..+...+|+.+|+++.|+.+ +| |++++|||+||+|||+.+.....+-+..
T Consensus 209 ~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~-- 285 (335)
T cd03802 209 PDYFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED-- 285 (335)
T ss_pred HHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeC--
Confidence 555665555554 5 4899999999999999999999999999863 67 9999999999999997765544443331
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 832 CLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 832 ~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|..+ +++++++++++++.++..+.. +..++... ..||++.++++++++|+
T Consensus 286 ----~~~g-~l~~~~~~l~~~l~~l~~~~~--~~~~~~~~------~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 ----GVTG-FLVDSVEELAAAVARADRLDR--AACRRRAE------RRFSAARMVDDYLALYR 335 (335)
T ss_pred ----CCcE-EEeCCHHHHHHHHHHHhccHH--HHHHHHHH------HhCCHHHHHHHHHHHhC
Confidence 4455 666779999999888865432 22233222 35999999999999984
No 115
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=3.3e-16 Score=160.41 Aligned_cols=202 Identities=22% Similarity=0.249 Sum_probs=164.6
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++..+...|++++|+..++++++.+|++..++..++.++...|++++|.+.++++++..|.+...+..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 56677777778888888888888888887778877788888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
..|++++|...+++++... +.....+..+|.++...|++++|...++++++.+|.+...+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887653 34556677888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
.++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 88888888887788888888888888888888888877766543
No 116
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.75 E-value=8.6e-18 Score=185.93 Aligned_cols=336 Identities=16% Similarity=0.204 Sum_probs=210.1
Q ss_pred eeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCc-----eE--ECCCCCHHHHHHHH
Q 002431 538 RVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-----FV--DVSAMSSDMIAKLI 608 (922)
Q Consensus 538 rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~i 608 (922)
||.+++..+.. ++++..+..+.+.+.+.+++|++++................... +. .........+.+.+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 57788877643 34456777888888777899998886543221101000000000 00 00001124455668
Q ss_pred HhCCCeEEEcCCCcCCCCchh-hhhcCCCceEEeccccCC------CCC--CC-c--------ccEEEecCccCCcCccC
Q 002431 609 NEDKIQILINLNGYTKGARNE-IFAMQPAPIQVSYMGFPG------TTG--AS-Y--------IDYLVTDEFVSPLRYAH 670 (922)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~-~~~~~~apvq~~~~g~~~------t~g--~~-~--------~d~~~~d~~~~~~~~~~ 670 (922)
+..++||++..+..+.+.... +......|+..++...+. ..+ .. . ..+-.+|.+++++....
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 160 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIA 160 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHH
Confidence 889999996544333222111 112234677665322110 000 00 0 00113455555544311
Q ss_pred ------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC
Q 002431 671 ------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN 742 (922)
Q Consensus 671 ------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~ 742 (922)
....++..+|+..-... .........+..++++++.++++.+++. .|+.+.++++|.++.+..|+
T Consensus 161 ~~~~~~~~~~~~~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~ 233 (374)
T cd03817 161 DLLREYGVKRPIEVIPTGIDLDR-------FEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD 233 (374)
T ss_pred HHHHhcCCCCceEEcCCccchhc-------cCccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC
Confidence 11223344443221100 0111111235566777777777777764 59999999999999888899
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
.+|+++|.++. ...+++.+.+.++ .++|.|.|.++..+....|+.+|+++.|+..+| |++++|||+||+|||+.+..
T Consensus 234 ~~l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 234 VKLVIVGDGPE-REELEELARELGL-ADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred eEEEEEeCCch-HHHHHHHHHHcCC-CCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 99999998876 7788888888999 589999999999999999999999999988777 99999999999999987665
Q ss_pred cchhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.....+. -|-.+ +++. +.+++++.+.++.+|++.++.++++.++.... ++ +++++++.|++
T Consensus 312 ~~~~~i~------~~~~g-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 373 (374)
T cd03817 312 GLPDLVA------DGENG-FLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEK---FS---FAKKVEKLYEE 373 (374)
T ss_pred Chhhhee------cCcee-EEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHH---HH---HHHHHHHHHhc
Confidence 4443322 13344 4443 33399999999999999999999999887633 33 77888888765
No 117
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=6.2e-16 Score=158.40 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
..|++++|++.+++++... +.....+..+|.++...|++++|...++++++..|++...+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887643 44556777778888888888888888888888777777777788888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888877777777777777777777777777777776665544
No 118
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.75 E-value=3.7e-17 Score=182.63 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=144.1
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-----HHHHHHHHHHcCCCCCceEEcC
Q 002431 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQIIFTD 776 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~rv~f~~ 776 (922)
+..++++.+.++|+.++|+ .|+.+.+++++.++.++.|+.+|+++|+++.. ...++...++.|+ .++|.|.|
T Consensus 211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPG 289 (398)
T ss_pred HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEec
Confidence 5556677777888888876 49999999999999888999999999976532 2456778888999 48999999
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 853 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~ 853 (922)
.++..+...+++.+|++|.|+.++| |++++|||++|+|||+........-+. . +-.+ ++. .|++++++.+
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~-----~-~~~g-~~~~~~~~~~l~~~i 362 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVV-----D-GVTG-LLVDPRDPEALAAAL 362 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHcc-----C-CCCe-EEeCCCCHHHHHHHH
Confidence 9999999999999999999998888 999999999999999766543333221 1 2234 443 4799999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 854 VSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.++..|++.+..++++.++.. ...|+++.++++++
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~~--~~~~s~~~~~~~~~ 397 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRRA--RARYTWERVAARLL 397 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHh
Confidence 999999999999999998876 33599999988875
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.75 E-value=1.8e-17 Score=180.43 Aligned_cols=258 Identities=5% Similarity=-0.026 Sum_probs=168.4
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCC-CCchhhh------hcCCCceEEecc----ccCCCCCCCccc------------EE
Q 002431 601 SDMIAKLINEDKIQILINLNGYTK-GARNEIF------AMQPAPIQVSYM----GFPGTTGASYID------------YL 657 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~-~~~~~~~------~~~~apvq~~~~----g~~~t~g~~~~d------------~~ 657 (922)
...+.+.|.+.++||+ |.+ +.-++.. ++|.-|++.++. .|-...+...+- .+
T Consensus 423 ~gdI~~~L~~f~PDVV-----HLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~ 497 (794)
T PLN02501 423 AGDTSQFIPSKDADIA-----ILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA 497 (794)
T ss_pred hHHHHHHhhccCCCEE-----EECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHh
Confidence 4679999999999999 443 2233333 333348766532 222222221111 12
Q ss_pred EecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCC-CCcCCCCCCCCcEEEEecCC--CCCCCHHHHHHHH
Q 002431 658 VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWC 734 (922)
Q Consensus 658 ~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~~~~l~~~~~~~~~~~~--~~K~~~~~~~~~~ 734 (922)
.+|.+++|+.....+....+...+ +.+ ...+.|... ..+.++|++.....++.++| ..|+++.++++|+
T Consensus 498 hcD~VIaPS~atq~L~~~vI~nVn------GVD--te~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla 569 (794)
T PLN02501 498 YCHKVLRLSAATQDLPKSVICNVH------GVN--PKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLA 569 (794)
T ss_pred hCCEEEcCCHHHHHhcccceeecc------ccc--ccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHH
Confidence 268888888664433222222111 111 112222211 22355676532222233444 4699999999999
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~ 813 (922)
.+.+..|+.+|+|+|+||. ++.+++.+.++|+ +|.|+|..+... .+|+.+|||+.||.++| |++++|||+||+
T Consensus 570 ~L~~~~pnvrLvIVGDGP~-reeLe~la~eLgL---~V~FLG~~dd~~--~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl 643 (794)
T PLN02501 570 KHKNELDGFNLDVFGNGED-AHEVQRAAKRLDL---NLNFLKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 643 (794)
T ss_pred HHHhhCCCeEEEEEcCCcc-HHHHHHHHHHcCC---EEEecCCCCCHH--HHHHhCCEEEECCCcccchHHHHHHHHcCC
Confidence 9988899999999999987 8899999999998 389999865433 46888999999999999 999999999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|||+...+...- +. -|-.. ++..|.+++++++.+++.|++.+...++ + ..++++..++++++.=
T Consensus 644 PVVATd~pG~e~-V~------~g~nG-ll~~D~EafAeAI~~LLsd~~~rl~~~a--~------~~~SWeAaadrLle~~ 707 (794)
T PLN02501 644 FVVCADHPSNEF-FR------SFPNC-LTYKTSEDFVAKVKEALANEPQPLTPEQ--R------YNLSWEAATQRFMEYS 707 (794)
T ss_pred CEEEecCCCCce-Ee------ecCCe-EecCCHHHHHHHHHHHHhCchhhhHHHH--H------hhCCHHHHHHHHHHhh
Confidence 999765442111 10 13334 5668999999999999998875433322 1 1489999998888764
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1e-16 Score=167.79 Aligned_cols=264 Identities=18% Similarity=0.251 Sum_probs=173.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
+..|..+.+.|+..+|.-.|+.+++.+|.+..+|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
-.+|++++.+-+...|....... + ...+++..- ..+.+. ..+..-.+.|-.+..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~-a---~~~~~~~~~---------~s~~~~-------------~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS-A---GENEDFENT---------KSFLDS-------------SHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc-c---CccccccCC---------cCCCCH-------------HHHHHHHHHHHHHHH
Confidence 88888888887776554110000 0 000000000 000111 112222334444444
Q ss_pred hCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 002431 299 LQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376 (922)
Q Consensus 299 ~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 376 (922)
..| .++++...||.+|.-.|+|++|+.+|+.++...|++...|+.||-.+....+.++|+..|++|+++.|....+++
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 444 566666666666666666777777777777667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPT----------MAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
++|.++..+|.|++|.+.|-.++.+.+. +..+|..|-.++..+++.+-+.++
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7777777777777777777777665432 124666666666666666644443
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=3.5e-15 Score=161.58 Aligned_cols=235 Identities=25% Similarity=0.316 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
|.-..+...++..|...|++++|+..++.+++. .|. ......+|.+|...+++.+|+.+|++++.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445556777777777777777777777665 333 333344777777777777777777777632
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----C---ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC
Q 002431 266 ---DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP-----S---HPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334 (922)
Q Consensus 266 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 334 (922)
+|....++.+|+.+|.+.|++++|..++++++++.. . -...+..++.++...+++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 444556677777777777777777777777776521 1 12355666667777777777777777666542
Q ss_pred --------CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002431 335 --------TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398 (922)
Q Consensus 335 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 398 (922)
+..+..+.+||.+|..+|++++|.++|++++++. +.....+..+|..|.+.+++.+|.+.|.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1224456677777777777777777777776652 222446667777777777777777777766
Q ss_pred Hhh-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 399 ITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 399 l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
..+ .|+....+.+|+.+|..+|++++|.++.++++.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 654 233345667777777777777777777766653
No 122
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-16 Score=158.89 Aligned_cols=294 Identities=22% Similarity=0.204 Sum_probs=184.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 104 WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
....+..+++..+|.+|+..+..+++..|++...|...+..+...+++++|.-..++.+++.|.........+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
+..+|.+.++ +..++ ....|+..+++.+..+ |. ..+...-+.++...|++++|...-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 5555544444 00110 1122222223222221 11 223334455555666666666666
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 339 (922)
-..+++++.+.++++..|.++....+.+.|+..|++++.++|+...+-...- .|..-.
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~----------------------~~k~le 250 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM----------------------MPKKLE 250 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh----------------------hHHHHH
Confidence 6666666666666666666666666666666666666666665433211100 011112
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
.+..-|.-.++.|++.+|.++|.+++.++|++ +..|.+++.+..++|+..+|+...+.+++++|....++...|.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 35566778889999999999999999999876 44788889999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+...+++++|.+.|+++++...+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999988665
No 123
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.73 E-value=5.1e-17 Score=187.96 Aligned_cols=182 Identities=11% Similarity=0.038 Sum_probs=143.4
Q ss_pred CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh--CCCeEEEEecCChhh----------HHHHHHHHHHcCCCCCce
Q 002431 707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR--VPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQI 772 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~rv 772 (922)
++.+++.+++++++|+ .|++..+++++.++.+. .|+.+ +|+|.++.. ...++..+.++|+ .++|
T Consensus 473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V 550 (1050)
T TIGR02468 473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQV 550 (1050)
T ss_pred hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeE
Confidence 3345566778888886 49999999999998653 45665 456765421 2467888999999 5999
Q ss_pred EEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CC
Q 002431 773 IFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NS 845 (922)
Q Consensus 773 ~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~ 845 (922)
.|+|+.+..+...+|+.+ |||+.|+.++| |+|++|||+||+|||+........-+ ..|.++ +++ .|
T Consensus 551 ~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII------~~g~nG-lLVdP~D 623 (1050)
T TIGR02468 551 AYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH------RVLDNG-LLVDPHD 623 (1050)
T ss_pred EecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh------ccCCcE-EEECCCC
Confidence 999999999999999877 69999999999 99999999999999954322222111 114455 443 48
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 846 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
++++++++.+++.|++.+++++++.+++.. .|+++.+++++.+.|.....+.
T Consensus 624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 624 QQAIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998763 4999999999999999887655
No 124
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.73 E-value=8.1e-17 Score=178.41 Aligned_cols=166 Identities=8% Similarity=0.063 Sum_probs=126.6
Q ss_pred CCcEEEEecCC--CCCCCHHHH----HHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 711 EDKFIFACFNQ--LYKMDPEIF----NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 711 ~~~~~~~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
++..+++.+++ ..|+.+.++ ++|..+.+..|+.+|+|+|+|+. . . +++++. .++|.|+|.++ +..
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~-~----~~~l~~-~~~V~~~G~v~--~~~ 292 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-P-A----VRALAA-LPGVTVTGSVA--DVR 292 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-H-H----HHHhcc-CCCeEEeeecC--CHH
Confidence 34445555565 469988877 67888888899999999998874 2 2 334455 47899999876 567
Q ss_pred HhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 785 RRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 785 ~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
.+|+.+||++.|+. .+| +++++|||+||+|||+.+.. ...+...+-.+.+++.|++++++++.+|.+|++.
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~-------~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA-------AEGIDALPGAELLVAADPADFAAAILALLANPAE 365 (397)
T ss_pred HHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc-------cccccccCCcceEeCCCHHHHHHHHHHHHcCHHH
Confidence 77999999999986 467 88999999999999976531 1111111112325668999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++++++.|+.+ ...|+++..++++++.|.
T Consensus 366 ~~~~~~~ar~~v--~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 366 REELGQAARRRV--LQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHH--HHhCCHHHHHHHHHHHhc
Confidence 999999999876 335999999999999875
No 125
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.73 E-value=7.7e-17 Score=176.55 Aligned_cols=316 Identities=13% Similarity=0.091 Sum_probs=200.7
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHH--HH--hccCc--eEECCCCCHHHHHHHHHhC
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--TQ--SEAEH--FVDVSAMSSDMIAKLINED 611 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~--~~~~~--~~~~~~~~~~~~~~~i~~~ 611 (922)
||.+++..+..+++...+..+.+.+.+.+++|.+++............ .. ..... ...........+.+.+++.
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 688999999888888899999999988899999988765432210000 00 00000 0001111246789999999
Q ss_pred CCeEEEcCCCcCCCCchhhhhcC-CCceEEeccccCCCCCCC--------cccEEEecCccCCcCccCCCc--------c
Q 002431 612 KIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTTGAS--------YIDYLVTDEFVSPLRYAHIYS--------E 674 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~~-~apvq~~~~g~~~t~g~~--------~~d~~~~d~~~~~~~~~~~~~--------e 674 (922)
++||++.... ....-...+..+ -.|+.+...+........ ..-+..+|.+++++.....+. +
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999965554 111111222211 246665543333222111 011123455555555433222 3
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (922)
++..+|+..... ...+.... +..++.+++.++|++++++ .|+.+.++++|..+.+..|+.+|+++|.++
T Consensus 160 ~~~vi~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~ 230 (353)
T cd03811 160 KIEVIYNPIDIE--------EIRALAEE-PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP 230 (353)
T ss_pred ccEEecCCcChh--------hcCcccch-hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence 333344322111 11111010 1034556677888888876 499999999999998888999999999887
Q ss_pred hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHH
Q 002431 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (922)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~ 831 (922)
. .+.+.+...+.|+ .++|.|.|..+ +...+++.+|+++.|+.++| |++++|||++|+|||+.........+..
T Consensus 231 ~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~-- 304 (353)
T cd03811 231 L-REELEALAKELGL-ADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILED-- 304 (353)
T ss_pred c-HHHHHHHHHhcCC-CccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--
Confidence 6 7788888999999 58999999844 56677999999999998888 9999999999999998665544333321
Q ss_pred HHhcCCCCcccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 832 CLATGLGEEMIV--NSMKEY---EERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 832 ~~~~g~~~~~i~--~~~~~~---~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
|-.+ ++. ++++++ +..+..+..|++.+.+++...++..
T Consensus 305 ----~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 305 ----GENG-LLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred ----CCce-EEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3334 443 466677 7888888889998888888655543
No 126
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=6.8e-15 Score=159.33 Aligned_cols=237 Identities=24% Similarity=0.388 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT---- 232 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 232 (922)
.|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4556667777999999999999999999999887 3444445566899999999999999999999875
Q ss_pred ----CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 233 ----RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC--------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 233 ----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+|. ..++.+|+.+|...|++++|..++++++++ .|.-...+..++.++..++++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 223 678889999999999999999999988854 2333456778899999999999999999999876
Q ss_pred C-----CCC---hHHHHhHHHHHHHcCChhHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 300 Q-----PSH---PQALTNLGNIYMEWNMLPAAASYYKATLAVT--------TGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 300 ~-----p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
. +++ +..+.++|.+|..+|++++|.++|+++++.. +.....++.+|..|.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 233 5688999999999999999999999999875 22355688999999999999999999998
Q ss_pred HHcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 364 VLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 364 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
+..+ .|+....+.+++.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8765 3455668999999999999999999999998853
No 127
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.72 E-value=9.5e-17 Score=182.19 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=135.1
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------hHHHHHHHHHHcCCCC
Q 002431 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQP 769 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~ 769 (922)
+.+|+ +.+.+++++++|+ .|+.+.++++|+++.+..+++.|+|+|+++. ..++++..+.+.|+ .
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~ 618 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-H 618 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-C
Confidence 45675 4566788888887 4999999999998765566789999987642 12467788999999 5
Q ss_pred CceEEcCCC-CcHH---HHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc--CCCCcc
Q 002431 770 DQIIFTDVA-MKQE---HIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT--GLGEEM 841 (922)
Q Consensus 770 ~rv~f~~~~-~~~~---~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~--g~~~~~ 841 (922)
++|.|+|.. +..+ ++..+. .+|||+.|+.+++ |+|.+|||+||+||| ++++|+ +-..+ |.++ +
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVV-------AT~~GG-~~EiV~dg~tG-f 689 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTF-------ATRFGG-PLEIIQDGVSG-F 689 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEE-------EcCCCC-HHHHhcCCCcE-E
Confidence 999999964 4444 343322 4689999999999 999999999999999 455551 11111 4455 4
Q ss_pred cc--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 842 IV--NSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 842 i~--~~~~~~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++ .|++++++++.++. .|++.+.+++++.++++ ...|+++.+++++.....
T Consensus 690 LVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV--~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI--YEKYTWKIYSERLLTLAG 746 (784)
T ss_pred EeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Confidence 43 47899999888765 69999999999998876 346999999999998864
No 128
>PRK14099 glycogen synthase; Provisional
Probab=99.71 E-value=1.1e-16 Score=178.75 Aligned_cols=183 Identities=18% Similarity=0.131 Sum_probs=132.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCce-EEcC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQI-IFTD 776 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv-~f~~ 776 (922)
+|+++|++. +.++|++++|+ .|+.+.+++++.++++. +.+|+|+|+|+. .++.+++.+++++ +++ .|+|
T Consensus 283 l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G 357 (485)
T PRK14099 283 LQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIG 357 (485)
T ss_pred HHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeC
Confidence 577899974 46788888876 59999999999998753 689999998753 2567777777654 455 7899
Q ss_pred CCCcHHHHHhc-cCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH--HHHHhcC-CCCcccc--CCHHHH
Q 002431 777 VAMKQEHIRRS-SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATG-LGEEMIV--NSMKEY 849 (922)
Q Consensus 777 ~~~~~~~~~~~-~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~~~~g-~~~~~i~--~~~~~~ 849 (922)
. .++...+| ..+|+||.||.+|| |++.+|||++|+|+|+........-|.. ......| -.+ +++ .|++++
T Consensus 358 ~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G-~l~~~~d~~~L 434 (485)
T PRK14099 358 Y--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATG-VQFSPVTADAL 434 (485)
T ss_pred C--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCce-EEeCCCCHHHH
Confidence 7 55666655 57999999999999 9999999999965553222111111110 0000000 123 332 478898
Q ss_pred HHHHHH---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 850 EERAVS---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 850 ~~~~~~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++++.+ +.+|++.+++++++.+. ..|++++++++++++|+++++
T Consensus 435 a~ai~~a~~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 435 AAALRKTAALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 888775 77899999888887653 349999999999999999875
No 129
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.71 E-value=1.4e-16 Score=174.31 Aligned_cols=314 Identities=9% Similarity=0.064 Sum_probs=181.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChH----------------HHHHHHhccCceEECCC-C
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTE----------------WRQRTQSEAEHFVDVSA-M 599 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~ 599 (922)
|||.++...++.+++++.+..|...+.+.++|+.+.+........ ....+-..-.+..+..+ .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 689999999999999999999999999999998765543221110 00000000012223333 2
Q ss_pred CHHHHHHHH-HhCCCeEEEcCCCcCCCCch---hh---hh-------c-CCCceEEeccccCCCCC--------------
Q 002431 600 SSDMIAKLI-NEDKIQILINLNGYTKGARN---EI---FA-------M-QPAPIQVSYMGFPGTTG-------------- 650 (922)
Q Consensus 600 ~~~~~~~~i-~~~~~dil~~~~~~~~~~~~---~~---~~-------~-~~apvq~~~~g~~~t~g-------------- 650 (922)
+...+.+.| +..++||+ |.|.-.. .+ +. . +..||+.|...+..-||
T Consensus 81 ~~~~~~~~i~~~~~pDvi-----HlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~ 155 (405)
T PRK10125 81 NFNELYRTITRTPGPVVL-----HFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTG 155 (405)
T ss_pred hHHHHHHHHhhccCCCEE-----EEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCccccccccc
Confidence 356778888 57899999 6654321 22 21 1 23699988443322221
Q ss_pred C---Cc--------ccE-----------E-----EecCccCCcCccC-----CC-ccceeecCCccccCCCccccccCCC
Q 002431 651 A---SY--------IDY-----------L-----VTDEFVSPLRYAH-----IY-SEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 651 ~---~~--------~d~-----------~-----~~d~~~~~~~~~~-----~~-~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
. |. +|. + ..+.++.|+.... .+ .+++..+|++.-. ....+.
T Consensus 156 c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~------~~~~~~ 229 (405)
T PRK10125 156 CQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDM------ATEAIL 229 (405)
T ss_pred CCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCc------cccccc
Confidence 0 00 121 0 1133444444210 00 1223333332211 000000
Q ss_pred CCCCCCcCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 698 PNCQPKRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 698 ~~~~~~r~~~~l~~~~~~~~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
+...+.| .+++..+++.+++ ..|+.+.+++++.++ .++.+|+|+|.++. .. .++|.
T Consensus 230 ~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~-~~------------~~~v~ 289 (405)
T PRK10125 230 AELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP-FT------------AGNVV 289 (405)
T ss_pred ccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc-cc------------ccceE
Confidence 0001111 1234445555554 348889999998865 35789999998643 11 25689
Q ss_pred EcCCC-CcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHH
Q 002431 774 FTDVA-MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEY 849 (922)
Q Consensus 774 f~~~~-~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~ 849 (922)
+.|.. +..+...+|+.+|||+.||.++| |++++|||+||+|||+.+......-++ +-.+ +++ .|++++
T Consensus 290 ~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~-------~~~G-~lv~~~d~~~L 361 (405)
T PRK10125 290 NHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQ-------KSGG-KTVSEEEVLQL 361 (405)
T ss_pred EecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEe-------CCcE-EEECCCCHHHH
Confidence 99976 45788889999999999999999 999999999999999543332222121 1123 333 366776
Q ss_pred HHHHHHHhcCHHHHHH-H---HHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 850 EERAVSLALDRQKLQA-L---TNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 850 ~~~~~~l~~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++. .+++.+.+ + ....+++. ...||.+.++++++++|+++
T Consensus 362 a~~-----~~~~~~~~~~~~~~~~~r~~~--~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 362 AQL-----SKPEIAQAVFGTTLAEFSQRS--RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred Hhc-----cCHHHHHHhhhhHHHHHHHHH--HHhCCHHHHHHHHHHHHHhC
Confidence 652 35555443 2 23344443 34599999999999999863
No 130
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.71 E-value=3.5e-16 Score=171.90 Aligned_cols=324 Identities=14% Similarity=0.129 Sum_probs=200.2
Q ss_pred eeeeecCCCC--CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCCHHHHHH-
Q 002431 538 RVGYVSSDFG--NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMSSDMIAK- 606 (922)
Q Consensus 538 rig~~s~~~~--~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~- 606 (922)
||.+++..+. .++++.++..+.+.+.+.+++|.+++........ .. ......+..+. .........
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGR-DE--ERNGHRVIRAPSLLNVASTPFSPSFFKQL 77 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcch-hh--hccCceEEEeecccccccccccHHHHHHH
Confidence 4566665554 3456678889999999889999999876543221 11 11111111111 111111111
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCc--cc------EEEecCccCCcCcc-------CC
Q 002431 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASY--ID------YLVTDEFVSPLRYA-------HI 671 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~--~d------~~~~d~~~~~~~~~-------~~ 671 (922)
.+...++||++-......+.....+..+..|+.++|.+......... .. +..+|.+++++... ..
T Consensus 78 ~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~ 157 (357)
T cd03795 78 KKLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRR 157 (357)
T ss_pred HhcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcC
Confidence 15678999995433222222222222245677777754322211100 00 11235555554321 12
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
+.++...+|++.-.... .+...........+.+.++++.++|. .|+.+.+++++.++. +.+|+++|
T Consensus 158 ~~~~~~~i~~gi~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G 225 (357)
T cd03795 158 FRDKVRVIPLGLDPARY--------PRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVG 225 (357)
T ss_pred CccceEEecCCCChhhc--------CCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEe
Confidence 23555556654321111 11000000123345556677777764 599999999998765 79999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
.|+. ...+++.+++.+. .++|.|.|.++..+...+|+.+|+++.|+. .+| |++++|||++|+|||+.+......-
T Consensus 226 ~g~~-~~~~~~~~~~~~~-~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~ 303 (357)
T cd03795 226 EGPL-EAELEALAAALGL-LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY 303 (357)
T ss_pred CChh-HHHHHHHHHhcCC-cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH
Confidence 9876 7788888888898 589999999999999999999999999975 366 9999999999999997654433222
Q ss_pred hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHH
Q 002431 827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWV 886 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (922)
+. .-|-.+ ++. .|.+++++.+..+.+|++.++.++++.++.. ...|+.+.++
T Consensus 304 i~-----~~~~~g-~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~ 357 (357)
T cd03795 304 VN-----LHGVTG-LVVPPGDPAALAEAIRRLLEDPELRERLGEAARERA--EEEFTADRMV 357 (357)
T ss_pred Hh-----hCCCce-EEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--HHhcchHhhC
Confidence 21 113334 443 5899999999999999999999999999876 3468877653
No 131
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=3e-15 Score=155.78 Aligned_cols=202 Identities=8% Similarity=0.081 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--HHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG-QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV--DEAIQC 292 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~ 292 (922)
++.++|+..+.++++.+|+ ..+|...+.++...| ++++++..++++++.+|++..+|...+.++...|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444444444 444444444444444 344555555555555555555555555554444432 344555
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc---CC----HHHHHHHHHHHH
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ---GN----YADAISCYNEVL 365 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~----~~~A~~~~~~al 365 (922)
++++++.+|.+..+|...+.++...|++++|++.+.++++.+|.+..+|+..+.++.+. |. .++++++..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555554443 11 235566666666
Q ss_pred ccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 366 RIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 366 ~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+|++..+|..++.++.. +++..+|...+.++++.+|+++.++..|+.+|..
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 6666666666666666665 3445556666666666666666666666666664
No 132
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=6.5e-15 Score=153.29 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=141.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--H
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL--N 118 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~ 118 (922)
++...+++++|+..+.++++.+|++..+|...+.++...| ++++++..++++++.+|++..+|...+.++.+.|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3444566677777777777777777777777777777776 467777777777777777777777777777666653 5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---CCH----HHHHHH
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES---GDL----NRALQY 191 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~ 191 (922)
+++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.++... |.+ ++++++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777666554 222 356666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH
Q 002431 192 YKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248 (922)
Q Consensus 192 ~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 248 (922)
..+++..+|++..+|..++.++.. .++..+|.+.+.+++...|+ ..++..++.+|..
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 667777777777777777777666 23445566666666655554 5555566666654
No 133
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.70 E-value=3.7e-16 Score=172.20 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=204.0
Q ss_pred eeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHH------HHHhccCceEECCCCCHHHHHHHHH
Q 002431 538 RVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLIN 609 (922)
Q Consensus 538 rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (922)
||.+++..+.. ++++..+..+.+.+-+.+++|.+++........... .+...........-.....+.+.++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 57777766643 455577888888888788999988865322110000 0000000111111112456788888
Q ss_pred hCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCCC----CCccc----------EEEecCccCCcCccC----
Q 002431 610 EDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTTG----ASYID----------YLVTDEFVSPLRYAH---- 670 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~g----~~~~d----------~~~~d~~~~~~~~~~---- 670 (922)
+.++||++-.+....+.....++ .+..|+.+.+.+...... ..... +--+|.+++++....
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~ 160 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELR 160 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHh
Confidence 99999995332211111112222 244677665432211000 00000 012355555544321
Q ss_pred -CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEE
Q 002431 671 -IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 747 (922)
Q Consensus 671 -~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 747 (922)
....++..+|++.-.. ...+.......+..++ +.+.++++.+++. .|+.+.+++++.++.++ |+.+|++
T Consensus 161 ~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i 232 (364)
T cd03814 161 ARGFRRVRLWPRGVDTE------LFHPRRRDEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVI 232 (364)
T ss_pred ccCCCceeecCCCcccc------ccCcccccHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEE
Confidence 1112222233221110 0001111112344444 4445666666654 59999999999999888 9999999
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhh
Q 002431 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATR 826 (922)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r 826 (922)
+|.++. ...++ +. .++|.|.|..+..+...+|+.+|++|.|+..+| |++++|||++|+|||+.+.......
T Consensus 233 ~G~~~~-~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~ 304 (364)
T cd03814 233 VGDGPA-RARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI 304 (364)
T ss_pred EeCCch-HHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh
Confidence 998865 44444 44 578999999989999999999999999988888 9999999999999998887655544
Q ss_pred hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 827 ~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+.. +-.+ +++ .+.+++++.+.++..|++.+.++.+..++.. ..|+++.+++++++.|+
T Consensus 305 i~~------~~~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 305 VTD------GENG-LLVEPGDAEAFAAALAALLADPELRRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred hcC------Ccce-EEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 431 2233 333 4777899999999999999999999998875 34999999999998873
No 134
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.70 E-value=2.2e-16 Score=174.62 Aligned_cols=335 Identities=16% Similarity=0.156 Sum_probs=209.8
Q ss_pred eeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHh--------ccCc--eEECCC-----CC
Q 002431 539 VGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQS--------EAEH--FVDVSA-----MS 600 (922)
Q Consensus 539 ig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~-----~~ 600 (922)
|.+++..+.. ++.+.++..+++.+.+.+++|++++........... ... .... +..... ..
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL-LKGRLVGVERLPVLLPVVPLLKGPLLYLLA 79 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh-cccccccccccccCcchhhccccchhHHHH
Confidence 3456666653 667788999999998889999999875443221110 000 0000 000000 01
Q ss_pred HHHHHHHHH--hCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcc--------cEEEecCccCCcCcc
Q 002431 601 SDMIAKLIN--EDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYI--------DYLVTDEFVSPLRYA 669 (922)
Q Consensus 601 ~~~~~~~i~--~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~~~~--------d~~~~d~~~~~~~~~ 669 (922)
...+.+.++ ..++||++-......+.....+.. ...|+.+...+.......... -+.-+|.+++++...
T Consensus 80 ~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 159 (377)
T cd03798 80 ARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEAL 159 (377)
T ss_pred HHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHH
Confidence 356788888 999999965533222211112221 224776665443322211110 011234455554431
Q ss_pred CC-------CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhC
Q 002431 670 HI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV 740 (922)
Q Consensus 670 ~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~ 740 (922)
.. ...++..+|++.-. ....+........++...+.++++.+++. .|+.+.+++++..+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~ 231 (377)
T cd03798 160 ADELKALGIDPEKVTVIPNGVDT--------ERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR 231 (377)
T ss_pred HHHHHHhcCCCCceEEcCCCcCc--------ccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC
Confidence 11 23334444432211 11111101000223445566777777765 599999999999998888
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
|+.+|.++|.++. ...+...++..++ .++|.+.|.++..+....+..+|+++.|+..+| |++++|||++|+|||+.+
T Consensus 232 ~~~~l~i~g~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 232 PDVHLVIVGDGPL-REALEALAAELGL-EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATD 309 (377)
T ss_pred CCeEEEEEcCCcc-hHHHHHHHHhcCC-cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEec
Confidence 9999999998876 6778888888898 589999999999999999999999999987777 999999999999999876
Q ss_pred CCcchhhhHHHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.......+. . +..+ ++ ..|.+++++++.++..|++. .+....+... ...|+++.+++++.+.|++
T Consensus 310 ~~~~~~~~~-----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 310 VGGIPEIIT-----D-GENG-LLVPPGDPEALAEAILRLLADPWL--RLGRAARRRV--AERFSWENVAERLLELYRE 376 (377)
T ss_pred CCChHHHhc-----C-Ccce-eEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHH--HHHhhHHHHHHHHHHHHhh
Confidence 554433222 1 2222 33 35899999999999999886 3444444433 3359999999999998875
No 135
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.70 E-value=6.3e-16 Score=169.79 Aligned_cols=323 Identities=15% Similarity=0.129 Sum_probs=196.4
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-----------HHHHHH
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----------SDMIAK 606 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 606 (922)
||.++++. .++...++..+++.+.+.+++|++++....... .+......++.++... ...+.+
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE----ELEALGVKVIPIPLDRRGINPFKDLKALLRLYR 74 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc----ccccCCceEEeccccccccChHhHHHHHHHHHH
Confidence 46777766 455667888899999878899999987654321 1222222222222111 245678
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhh----hc-CCCceEE-eccccCCCCCCCc-----------ccEEEecCccCCcCcc
Q 002431 607 LINEDKIQILINLNGYTKGARNEIF----AM-QPAPIQV-SYMGFPGTTGASY-----------IDYLVTDEFVSPLRYA 669 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~----~~-~~apvq~-~~~g~~~t~g~~~-----------~d~~~~d~~~~~~~~~ 669 (922)
.++..++||++ ++.....++ .+ ...|..+ ...++........ .-+..+|.+++++...
T Consensus 75 ~~~~~~~dvv~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 149 (359)
T cd03808 75 LLRKERPDIVH-----THTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDD 149 (359)
T ss_pred HHHhcCCCEEE-----EccccchhHHHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHH
Confidence 88889999994 433322222 22 2233333 3222221111111 0012345555555431
Q ss_pred CCCccceeecC-CccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEE
Q 002431 670 HIYSEKLVHVP-HCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (922)
Q Consensus 670 ~~~~e~~~~lp-~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 746 (922)
.....+....+ ...+...+.........+.. .. .+++.++|+.+++. .|+.+.+++++..+.+..|+.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~ 223 (359)
T cd03808 150 RDLALKLGIIKKKKTVLIPGSGVDLDRFSPSP--EP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL 223 (359)
T ss_pred HHHHHHhcCCCcCceEEecCCCCChhhcCccc--cc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE
Confidence 11111110010 11111111100000000100 00 23445677777754 599999999999998888999999
Q ss_pred EecCChhhHHHHHHH-HHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 747 LLRFPAAGEMRLRAY-AVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~-~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
++|.++. ....... +.+.+. .++|.|.|. ..+...+|+.+|+++.|+.++| |++++|||++|+|||+.+.....
T Consensus 224 i~G~~~~-~~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~ 299 (359)
T cd03808 224 LVGDGDE-ENPAAILEIEKLGL-EGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR 299 (359)
T ss_pred EEcCCCc-chhhHHHHHHhcCC-cceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch
Confidence 9998865 3333332 667777 589999998 5677788999999999988888 99999999999999987655443
Q ss_pred hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 825 ~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.-+ .. |-.+ ++. +|++++++.+..+..|++.+..++++.++.. ...|+.+.++++++
T Consensus 300 ~~i-----~~-~~~g-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~ 358 (359)
T cd03808 300 EAV-----ID-GVNG-FLVPPGDAEALADAIERLIEDPELRARMGQAARKRA--EEEFDEEIVVKKLL 358 (359)
T ss_pred hhh-----hc-Ccce-EEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHhh
Confidence 322 11 3334 443 4789999999999999999999999988875 33599999988875
No 136
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.7e-13 Score=141.23 Aligned_cols=426 Identities=12% Similarity=0.010 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..++.-...+...++|++|.+...+++...|++..+......++.+.++|++|+...+.-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4555556677888999999999999999999999999999999999999999996655433222221 222688999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (922)
.++.++|+..++ ..++.+.......+.+++++|+|++|..+|+...+.+.++............. --..+ . ..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-Q-LL 164 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-H-HH
Confidence 999999999998 44666677889999999999999999999999988776665443222211110 00111 1 23
Q ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC--------hhHHHhHHHHHHHcCChHHHH
Q 002431 194 EAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN--------AIAFGNLASTYYERGQADMAI 256 (922)
Q Consensus 194 ~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~--------~~~~~~l~~~~~~~g~~~~A~ 256 (922)
+.....|. +.+.+++.+.++...|+|.+|++.+++++.+ +.+ ......++.++...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333444 5678999999999999999999999999432 111 345678899999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHH--HHHHHHHHHHhhCCC----------ChHHHHhHHHHHHHcCChh
Q 002431 257 LYYKQAIGCDPRFLEAYNNLGNALKDV---GRVD--EAIQCYNQCLSLQPS----------HPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 257 ~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~--~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~ 321 (922)
..|...++.+|.+........+-+... .++- .++..++......++ -..++.+.+.+.+-.+..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999988877654332222222111 1111 122222222111111 1234555566666666666
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHH-
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAI- 399 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al- 399 (922)
++.+.....-...|.....-........+...+.+|.+++.+..+.+|.. ..+.+.++.+...+|+++.|++.+...+
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 66665555444444443333344444445557999999999999999987 6788899999999999999999999433
Q ss_pred -------hhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 400 -------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR-------PDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 400 -------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
+.. ..+.+-..+-..|.+.++.+.|...+.+++.-. +.-...+..++..-...|.-+++.+.+++
T Consensus 405 ~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 405 SWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 322 234555666777888887777777777766532 22222233344444555777788877777
Q ss_pred HHH
Q 002431 466 VEG 468 (922)
Q Consensus 466 ~~~ 468 (922)
+.+
T Consensus 484 l~k 486 (652)
T KOG2376|consen 484 LVK 486 (652)
T ss_pred HHH
Confidence 765
No 137
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.70 E-value=4e-17 Score=184.07 Aligned_cols=178 Identities=13% Similarity=0.182 Sum_probs=141.2
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 710 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 710 ~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
+++.++++.++|+ .|+.+.+++++..+.++.|+.+|+|+|.++. -.+.+++.++++|+ .++|.|+| ..+..
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G---~~~v~ 365 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTG---FQNVK 365 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcC---CccHH
Confidence 3456778888875 5999999999999999999999999998742 24678888999999 59999999 45667
Q ss_pred HhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
.+|+.+|+++.|+..+| |++++|||+||+|||+.+......-+...--...|-.+ ++. .|++++++++.++.+|++
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G-~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAG-EVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCce-EEECCCCHHHHHHHHHHHhcCHH
Confidence 77889999999998888 99999999999999975544333322210000013344 443 589999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.+.+++++.+++. ...|+.+.+++++++.|+
T Consensus 445 ~~~~~~~~a~~~v--~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 445 LRRAMGEAGRKRV--ERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhC
Confidence 9999999999877 456899999999999884
No 138
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.69 E-value=4.7e-16 Score=170.99 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=197.1
Q ss_pred eeeeecCCCCCC---hhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEE------------------C
Q 002431 538 RVGYVSSDFGNH---PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVD------------------V 596 (922)
Q Consensus 538 rig~~s~~~~~h---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 596 (922)
||.+++..+..+ +...++..+.+.+.+.++||.+++........ .. ......... .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQ-DK--EVIGVVVYGRPIDEVLRSALPRDLFHLS 77 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCc-cc--ccccceeeccccccccCCCchhhhhHHH
Confidence 577888777553 45578888999998888999998875433211 10 000000000 0
Q ss_pred CCC---CHHHHHHHHHhCCCeEEEcCCCcCCCCch-hhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccC-C
Q 002431 597 SAM---SSDMIAKLINEDKIQILINLNGYTKGARN-EIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH-I 671 (922)
Q Consensus 597 ~~~---~~~~~~~~i~~~~~dil~~~~~~~~~~~~-~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~-~ 671 (922)
... ....+.+.+++.++||++.......+..+ ........|+.++..++........+-....|.+++++.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 157 (359)
T cd03823 78 DYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDR 157 (359)
T ss_pred hccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHH
Confidence 000 12456788889999999544332111111 112233468877654332111111000001144444433211 1
Q ss_pred C------ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe
Q 002431 672 Y------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (922)
Q Consensus 672 ~------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~ 743 (922)
+ .+++..+|+..-.. ...+ ... +.+++.++|+.+++. .|+.+.+++++.++.+ |+.
T Consensus 158 ~~~~~~~~~~~~vi~n~~~~~--------~~~~----~~~--~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~ 221 (359)
T cd03823 158 YVANGLFAEKISVIRNGIDLD--------RAKR----PRR--APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDI 221 (359)
T ss_pred HHHcCCCccceEEecCCcChh--------hccc----ccc--CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCc
Confidence 1 12333333321110 0111 000 345566777777765 5999999999998876 889
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
+|+++|.++. ........ +. .++|.|.|.++..+...+|+.+|+++.|+. ++| |++++|||++|+|||+.+..
T Consensus 222 ~l~i~G~~~~-~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 296 (359)
T cd03823 222 ELVIVGNGLE-LEEESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG 296 (359)
T ss_pred EEEEEcCchh-hhHHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC
Confidence 9999998765 33332222 55 489999999999999999999999999986 566 99999999999999987655
Q ss_pred cchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.....+. . |..+ ++. .|.+++++.+.++.+|++.++.++++.++.. +.+.+++++++.|+
T Consensus 297 ~~~e~i~-----~-~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 358 (359)
T cd03823 297 GMAELVR-----D-GVNG-LLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPR------SIEDQAEEYLKLYR 358 (359)
T ss_pred CHHHHhc-----C-CCcE-EEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhh------hHHHHHHHHHHHhh
Confidence 4433222 1 3334 333 4689999999999999999999999988864 22888999998885
No 139
>PRK14098 glycogen synthase; Provisional
Probab=99.69 E-value=3.7e-16 Score=174.89 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=135.6
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+++++|++ ++.+++++++|+ .|+.+.+++++.++++ ++.+|+|+|+|+.. ++.+++.++++ +++|.|.|.
T Consensus 295 l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~---~~~V~~~g~ 369 (489)
T PRK14098 295 LLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEH---PEQVSVQTE 369 (489)
T ss_pred HHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEEe
Confidence 45678887 356889999876 5999999999999875 47999999988642 46788888776 378999998
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+..+...+|+.+|+||.||.+++ |++.+|||++|+|+|+........-+.. .. .-|-++ ++. .|++++++++.
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~-~~-~~~~~G-~l~~~~d~~~la~ai~ 446 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE-VS-EDKGSG-FIFHDYTPEALVAKLG 446 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec-CC-CCCCce-eEeCCCCHHHHHHHHH
Confidence 888888889999999999999999 9999999999988775433222211100 00 001223 332 47888888776
Q ss_pred H---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 855 S---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 855 ~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
+ +.+|++.+++++++.. ...||++.++++++++|++++
T Consensus 447 ~~l~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 447 EALALYHDEERWEELVLEAM-----ERDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHcCHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHh
Confidence 5 4468887777665432 246999999999999999876
No 140
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.68 E-value=6.3e-16 Score=152.11 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=133.4
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.++...+|+ .|+.+-++++-.++.++.|+++++|+|+||. +..+++..+++-+ .+||.|+|.++.++.-+.|...|
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~ 273 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGD 273 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCc
Confidence 556666665 4999999999999999999999999999997 8889999999999 69999999999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--------CHHHHHHHHHHHhcCHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--------SMKEYEERAVSLALDRQK 862 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--------~~~~~~~~~~~l~~d~~~ 862 (922)
|||.||..+. |++++||+.||+||| .+||| |+|| .+.. ++++.+++..+-.+....
T Consensus 274 IFlntSlTEafc~~ivEAaScGL~VV-------sTrVG-------GIpe-VLP~d~i~~~~~~~~dl~~~v~~ai~~~~~ 338 (426)
T KOG1111|consen 274 IFLNTSLTEAFCMVIVEAASCGLPVV-------STRVG-------GIPE-VLPEDMITLGEPGPDDLVGAVEKAITKLRT 338 (426)
T ss_pred EEeccHHHHHHHHHHHHHHhCCCEEE-------EeecC-------Cccc-cCCccceeccCCChHHHHHHHHHHHHHhcc
Confidence 9999999988 999999999999999 79999 9999 6654 366666555554432211
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
. -...-++. +..|+++..|++.|+.|..+-.
T Consensus 339 ~---p~~~h~~v--~~~y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 339 L---PLEFHDRV--KKMYSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred C---chhHHHHH--HHhccHHHHHHHHHHHHHHHhh
Confidence 1 11122222 4469999999999999987643
No 141
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.68 E-value=8e-16 Score=174.17 Aligned_cols=182 Identities=16% Similarity=0.028 Sum_probs=136.4
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+|+++|++. +.+++++++|+ .|+.+.+++++.++.+. +.+|+|+|.|+ ...+.+++.+.+.+ ++|.|.+.
T Consensus 279 l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~ 353 (473)
T TIGR02095 279 LQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIG 353 (473)
T ss_pred HHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEc
Confidence 678899986 67888888876 59999999999998764 48999999884 23567777776653 57888887
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~ 854 (922)
.+.++...+|+.+|++|.|+.++| |++.+|||++|+|||+.....+..-+...--...+-.+ ++. .|++++++.+.
T Consensus 354 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G-~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 354 YDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTG-FLFEEYDPGALLAALS 432 (473)
T ss_pred CCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 777777778999999999999999 99999999999999955433332222100000000223 332 48889998888
Q ss_pred HHhc----CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 855 SLAL----DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 855 ~l~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++.. |++.+.+++++..+ ..||++.++++++++|++
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAMS-----QDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHhc-----cCCCcHHHHHHHHHHHHh
Confidence 8776 88888888776643 359999999999999986
No 142
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.8e-13 Score=149.85 Aligned_cols=269 Identities=14% Similarity=0.008 Sum_probs=188.5
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+|+.+.++..+|..+...|+.+++.+.+.++.+..+.+ .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888999999999999999999888888888777654 456777788889999999999999999999999887766
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 002431 106 NLASAYMRKG----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181 (922)
Q Consensus 106 ~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 181 (922)
. +..+...| ....+.+.+......+|........++.++..+|++++|...++++++..|++..++..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444444 444444444443345667777778888899999999999999999999999998888999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHH----hHHHHHHHcCC
Q 002431 182 SGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFG----NLASTYYERGQ 251 (922)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~ 251 (922)
.|++++|+..+++.+...|.++. .+..++.++...|++++|+..+++++...|. ..... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998887764332 4567888899999999999999888765552 11111 22222333333
Q ss_pred hHHHHHH--H-HHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 252 ADMAILY--Y-KQAIGCDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 252 ~~~A~~~--~-~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
...+... + .......+. ........+.++...|+.++|...++.+..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222222 1 111111111 112223456666677777777777766654
No 143
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.66 E-value=1.3e-15 Score=169.84 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=134.2
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+++.++|+ .|+.+.++++|.++.+..|+.+|.|+|+|+. .+.|++.+++.|+ .++|.|.|..+ ...+|+.+|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-~~~l~~~i~~~~l-~~~V~f~G~~~---~~~~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-KQKLQKIINENQA-QDYIHLKGHRN---LSEVYKDYE 394 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh-HHHHHHHHHHcCC-CCeEEEcCCCC---HHHHHHhCC
Confidence 455556654 6999999999999999999999999999986 7899999999999 59999999764 445578899
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCC-cchhhhHHHHHHhcCCCCccccC------C----HHHHHHHHHHHhcC
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN------S----MKEYEERAVSLALD 859 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~------~----~~~~~~~~~~l~~d 859 (922)
+||.||.++| |+|++|||+||+|||+.... ...+ ++ .-|.++ +++. | ++++++++.+|++
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~e-----iI-~~g~nG-~lv~~~~~~~d~~~~~~~la~~I~~ll~- 466 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPT-----FI-EDNKNG-YLIPIDEEEDDEDQIITALAEKIVEYFN- 466 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHH-----Hc-cCCCCE-EEEeCCccccchhHHHHHHHHHHHHHhC-
Confidence 9999999999 99999999999999975421 1122 11 126666 5543 2 7889999999994
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 860 RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++.+.++++..++.. ..|+.+..+++++++++++
T Consensus 467 ~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 467 SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhC
Confidence 567889999998864 3499999999999888753
No 144
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.3e-13 Score=132.06 Aligned_cols=417 Identities=17% Similarity=0.129 Sum_probs=252.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
..+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
+.+...+.....-.......-+.+.+..+++..+..+.++.-. .++.+.....|.+.++.|++++|.+-|+.+++...
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 9998887654222344555566677788888888777766532 25677888999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHH-HHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCChhHHH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL----KPTFPD-AYLNLGNVYKALGMP-QEAIMCYQRAVQTRPNAIAFG 240 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~ 240 (922)
-++..-++++.+.++.+++..|+++..++++. .|...- .......+ ...|+. .-++..+ .++++
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sal---------~eAfN 245 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSAL---------VEAFN 245 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHHH---------HHHhh
Confidence 88888899999999999999999988888764 232100 00000000 000000 0000000 22333
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
..+.++++.++++.|.+.+..+-.... -++.++.+++..- ..+++.+..+-++-.++++|-.++.+.++-.+|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 444455555555555544443321110 1122333333221 1233444444444455555544555555555555555
Q ss_pred ChhHHHHHHHHHHhcCCC-CchhhhhHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHH-HHHHHH-----hCCHHH
Q 002431 319 MLPAAASYYKATLAVTTG-LSAPFNNLAVIY-KQQGNYADAISCYNEVLRIDPLAADGLVNR-GNTYKE-----IGRVTD 390 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~-----~g~~~~ 390 (922)
-++-|...+.+--...-. -....+.+-..+ ..+-..++|.+-+...-..-- .-+..+ +.+... .....+
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~---~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT---EKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHH
Confidence 555444443221100000 000111111111 122344444443333221100 000000 011100 112334
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
|++.|+.++++. ..+....+++|+...++..+.+.|++..+...++...
T Consensus 402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 555666666553 3356778889999999999999999988887666543
No 145
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.65 E-value=1.3e-15 Score=170.29 Aligned_cols=330 Identities=10% Similarity=0.037 Sum_probs=186.8
Q ss_pred hhhhHHhhcCCCCC--eEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhh
Q 002431 553 HLMGSVFGMHNKEN--VEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEI 630 (922)
Q Consensus 553 ~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~ 630 (922)
..+.++++.+.+.. +.|.+-+..+. +..+.+........++.++--....+.+.|+..++||+|-..+....+.+..
T Consensus 64 ~~~~~l~~~l~~~~~~~~i~~t~~t~~-~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~ 142 (425)
T PRK05749 64 RAAIPLIRALRKRYPDLPILVTTMTPT-GSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPNLIAE 142 (425)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCcc-HHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHHHHHH
Confidence 56677777665443 44443333222 2222222222122233444334678899999999999965433332222223
Q ss_pred hhcCCCceEEeccccCCCCC-----CCcc---cEEEecCccCCcCccCCCccceeecCCccccCCCcc-ccccCCCC---
Q 002431 631 FAMQPAPIQVSYMGFPGTTG-----ASYI---DYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ-KNMDVLDP--- 698 (922)
Q Consensus 631 ~~~~~apvq~~~~g~~~t~g-----~~~~---d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~-~~~~~~~~--- 698 (922)
...+..|+.+..-..+..+. .+.+ -+...|.++++++.......++ .+|.. +...++. ......+.
T Consensus 143 ~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~-g~~~~-i~vi~n~~~d~~~~~~~~~ 220 (425)
T PRK05749 143 LKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFLAL-GAKNE-VTVTGNLKFDIEVPPELAA 220 (425)
T ss_pred HHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHc-CCCCC-cEecccccccCCCChhhHH
Confidence 33455788775311111110 0000 0112355555555422211111 12221 1111110 00000000
Q ss_pred CCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 699 NCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 699 ~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.....|.++| + +..++.+.++..|....++++|.++.++.|+.+|+|+|+|+...+.+++.+++.|++ .+.|.|..
T Consensus 221 ~~~~~r~~~~-~-~~~vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~--~~~~~~~~ 296 (425)
T PRK05749 221 RAATLRRQLA-P-NRPVWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLS--YVRRSQGE 296 (425)
T ss_pred HHHHHHHHhc-C-CCcEEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCc--EEEccCCC
Confidence 0112456666 4 334555556667888889999999998899999999999986337899999999984 34554421
Q ss_pred ------------CcHHHHHhccCCcEE-ecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC
Q 002431 779 ------------MKQEHIRRSSLADLF-LDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN 844 (922)
Q Consensus 779 ------------~~~~~~~~~~~~dv~-l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~ 844 (922)
...+...+|+.+||+ +-++. .+||.+.+|||++|+|||+.+...-.+-+. ..+...|.- +...
T Consensus 297 ~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~-~~~~~~g~~--~~~~ 373 (425)
T PRK05749 297 PPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIF-ERLLQAGAA--IQVE 373 (425)
T ss_pred CCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHH-HHHHHCCCe--EEEC
Confidence 135788899999995 54554 346999999999999999744211111111 122222320 2247
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 845 ~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
|++++++.+.+|.+|++.+++++++.++..... .+.++++.+.+++..
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~~l 421 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEPYL 421 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHhc
Confidence 999999999999999999999999999876431 355566666665543
No 146
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=3.9e-13 Score=147.19 Aligned_cols=204 Identities=20% Similarity=0.083 Sum_probs=142.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
+|+.+.++..+|..+...|+.+.|.+.+.++.+..|.+ .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67778888888888888888888888787777765543 445666677778888888888888888888888776655
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002431 140 NLGNLMKAQG----LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215 (922)
Q Consensus 140 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 215 (922)
. +..+...| ....+.+.+.......|.....+..++.++...|++++|...++++++..|++...+..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444333 333344433333344566666667777777788888888888888888887777777777878877
Q ss_pred cCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 216 LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
.|++++|+..+++.+...|. ...+..++.++...|++++|+..+++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 88888888877777776542 22345667777777777777777777654444
No 147
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.65 E-value=1.6e-15 Score=167.58 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=134.6
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC--eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 711 ~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
++.+++++++++ .|+.+.+++++.++.+..|+ .+++++|+|+. .+.++..+++.+. .++|.|+|.++..+...+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-EDTLKELAESKPE-NISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-HHHHHHHHHhcCC-CceEEEecCCChHHHHHH
Confidence 345677777765 59999999999999998875 45677888876 7789988888888 589999999999999888
Q ss_pred ccC--CcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 787 SSL--ADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 787 ~~~--~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
|.. +|+|+.|+.++| |++++|||++|+|||+........-+. . |.++.++. +|++++++++.++.+|++
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~-----~-~~~G~l~~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVD-----N-GGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhc-----C-CCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence 864 899999999999 999999999999999644332222222 1 33341333 378999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
.+..|+++.++.. ...||.+...+++
T Consensus 380 ~~~~m~~~ar~~~--~~~f~~~~~~~~~ 405 (407)
T cd04946 380 EYQTMREKAREKW--EENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHH--HHHcCHHHhHHHh
Confidence 9999999999987 4469988877665
No 148
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=3e-12 Score=141.06 Aligned_cols=296 Identities=18% Similarity=0.149 Sum_probs=221.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++-.+..+...|++++|++++++....-.+....+...|.++.++|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 45577889999999999999999888778888999999999999999999999999999999999999999988884433
Q ss_pred -----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002431 82 -----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155 (922)
Q Consensus 82 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (922)
+.+.-..+|++..+..|..... ..+...+..-..+. .+..++...+..+ -|..+..+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHH
Confidence 5677788898888888774322 22222222222333 3334445555443 4556666666665444433333
Q ss_pred HHHHHHHhh---------------CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 156 SCYLEALRI---------------QPTF--AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 156 ~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
.++...... .|.. ..+++.++..|-..|++++|+++++++++..|..++.|...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 333333221 1222 24568889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CCc-------HHHHHHHHHHHHHcCCHHH
Q 002431 219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PRF-------LEAYNNLGNALKDVGRVDE 288 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~-------~~~~~~l~~~~~~~g~~~~ 288 (922)
+.+|.+.++.+-+.++. ...-...+..+.+.|+.++|.+.+......+ |.. .+.....|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998887 4455566778889999999999988876544 211 1223456889999999999
Q ss_pred HHHHHHHHHhhC
Q 002431 289 AIQCYNQCLSLQ 300 (922)
Q Consensus 289 A~~~~~~al~~~ 300 (922)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999998887753
No 149
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=6.5e-11 Score=125.32 Aligned_cols=446 Identities=15% Similarity=0.168 Sum_probs=294.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
-...+..+|+...-...|++++..-| .+...|-.........+-.+-++..|++.++..|...+- ....+...++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~ 184 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDR 184 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccc
Confidence 34556677777777777777776655 334455555555556666667777777777777665332 2334555666
Q ss_pred HHHHHHHHHHHHhc--------------------------------------------CCC-cHHHHHHHHHHHHHcCCH
Q 002431 83 IDLAIRYYLVAIEL--------------------------------------------RPN-FADAWSNLASAYMRKGRL 117 (922)
Q Consensus 83 ~~~A~~~~~~al~~--------------------------------------------~p~-~~~~~~~la~~~~~~g~~ 117 (922)
+++|.+.+...+.. .++ -...|..||..|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 66666666555432 111 123577888889999999
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHH-----HHHHHcC-------------CHHHHHHHHHHHH------------hh
Q 002431 118 NEAAQCCRQALALNP---LLVDAHSNLG-----NLMKAQG-------------LVQEAYSCYLEAL------------RI 164 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p---~~~~~~~~la-----~~~~~~g-------------~~~~A~~~~~~al------------~~ 164 (922)
++|..+|++++..-- +-..++...+ .+..+.+ +.+-....|+..+ +.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 999999988876531 1111111111 1111111 1222333344433 33
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-C--
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK-LKPTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-N-- 235 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-- 235 (922)
+|++...|.....+ ..|+..+-+..|.++++ .+|.. ...|..++..|...|+.+.|..+|+++.+..- .
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 66666666665544 36778888888888876 34432 34788999999999999999999999987532 2
Q ss_pred --hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 236 --AIAFGNLASTYYERGQADMAILYYKQAIGCDP------------------RFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 236 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
..+|..-|..-....+++.|+++.+.+..... ++...|..++......|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 67888888888899999999999998873211 1234677788888888999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC--CCCchhhhhHHHHHH---HcCCHHHHHHHHHHHHccCCC
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYK---QQGNYADAISCYNEVLRIDPL 370 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~ 370 (922)
++++.--.|.+..+.|..+....-++++.+.|++.+.+. |....+|+..-..+. ...+.+.|..+|+++++..|.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 999888888999999999999999999999999998886 444556655443333 345789999999999998773
Q ss_pred C-HH-HHHHHHHHHHHhCCHHHHHHHHHHH------------------------------------HhhCCCc--HHHHH
Q 002431 371 A-AD-GLVNRGNTYKEIGRVTDAIQDYIRA------------------------------------ITIRPTM--AEAHA 410 (922)
Q Consensus 371 ~-~~-~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------------l~~~p~~--~~~~~ 410 (922)
. .. .+...+..-.+-|.-..|+.+|+++ ++.-|+. .+...
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mcl 662 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHH
Confidence 2 22 3444455555556655555555544 4443332 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-C-CHHHHHHHHHhhcccCC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRP-D-FPEATCNLLHTLQCVCS 455 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~~l~~~~~~~~~ 455 (922)
..+.+-.+.|..+.|..+|.-.-++.+ . ++..|...-..-...|+
T Consensus 663 rFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 567777888888888888888877743 2 44555555445555565
No 150
>PLN00142 sucrose synthase
Probab=99.63 E-value=2.6e-15 Score=170.45 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=135.3
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----hH------HHHHHHHHHcCCCC
Q 002431 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----GE------MRLRAYAVAQGVQP 769 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~------~~l~~~~~~~g~~~ 769 (922)
..+|+ +++..++++++|+ .|+.+.++++++++.+..|+++|+|+|++.. .. .++++.+.+.|+ .
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~ 641 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-K 641 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-C
Confidence 34665 3445678888887 4999999999999877778899999987621 01 357788899999 5
Q ss_pred CceEEcCCC----CcHHHHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc
Q 002431 770 DQIIFTDVA----MKQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (922)
Q Consensus 770 ~rv~f~~~~----~~~~~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~ 843 (922)
++|.|+|.. +..+...++. .+|||+.|+.++| |+|++|||+||+|||+........-|. -|.++ +++
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~------dG~tG-~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIV------DGVSG-FHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhc------CCCcE-EEe
Confidence 999999853 3356666555 5799999999999 999999999999999533222221111 15556 443
Q ss_pred --CCHHHHHHHHHH----HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 844 --NSMKEYEERAVS----LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 844 --~~~~~~~~~~~~----l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.|++++++++.+ +..|++.+.+++++.++++ ...|+++.++++++++-
T Consensus 715 ~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv--~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 715 DPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRI--YECYTWKIYAERLLTLG 768 (815)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 478898888765 4579999999999998876 34699999999999765
No 151
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=8.2e-11 Score=124.59 Aligned_cols=411 Identities=14% Similarity=0.144 Sum_probs=221.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
-..|++++..--+-+..|......+..+|+...-...|.+++..-|- ....|-.........+-.+-++..|++-++.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 33445544433345678888899999999999999999999988774 3556666667777888889999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCC
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN-------PLLVDAHSNLGNLMKAQGLVQE---AYSCYLEALRIQP 166 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p 166 (922)
+|... ......+...+++++|.+.+...+..+ +.+...|..+..+..+.-+.-. ....++..+...+
T Consensus 168 ~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 168 APEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred CHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 98754 445667788999999999888776532 2233333333333333221111 1112222333333
Q ss_pred Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------------------
Q 002431 167 TF-AIAWSNLAGLFMESGDLNRALQYYKEAVKL----------------------------------------------- 198 (922)
Q Consensus 167 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------- 198 (922)
+. ...|..||..|.+.|.+++|...|++++..
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 22 233444444444444444444444444432
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCC------hhHHHhHHHHHHHcCC
Q 002431 199 --------------------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ-TRPN------AIAFGNLASTYYERGQ 251 (922)
Q Consensus 199 --------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~ 251 (922)
+|.+...|.....+ ..|+..+-+..|.+++. .+|. ...|..++..|...|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 23333333332222 23445555555555543 2332 3445555555555566
Q ss_pred hHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------ChHHHHh
Q 002431 252 ADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS------------------HPQALTN 309 (922)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~ 309 (922)
.+.|..+|+++.+..-.. ..+|..-|..-....+++.|+++.+.+...-.. +..+|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 666666655555432221 234555555555555555555555555432110 1224445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHH---H
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYK---E 384 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~---~ 384 (922)
+++.....|-++.....|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+. |...+.|...-..+. .
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555655555555553 233333333222221 2
Q ss_pred hCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 385 IGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
..+.+.|...|++|++..|.. ..++...+..-.+-|-...|+.+|+++-.
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 234555555566665555421 12333344444445555555555555443
No 152
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.63 E-value=3.4e-15 Score=170.11 Aligned_cols=175 Identities=17% Similarity=0.083 Sum_probs=129.8
Q ss_pred CcCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
+|+++|++ ++.++++.++|+ .|+.+.+++++.++.+.. .+|+++|.|+.. .+.+++...+. .++|+|.+.
T Consensus 284 l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~--~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~ 358 (476)
T cd03791 284 LQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELG--GQLVILGSGDPEYEEALRELAARY---PGRVAVLIG 358 (476)
T ss_pred HHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcC--cEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 57888986 677888888876 599999999999987643 889999987532 34566665554 468887665
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCC------CCcccc--CCHHH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL------GEEMIV--NSMKE 848 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~------~~~~i~--~~~~~ 848 (922)
.+......+|+.+|++|.|+.+++ |++.+|||++|+|||+.....+..-+.. |. ++ ++. .|+++
T Consensus 359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G-~~~~~~~~~~ 431 (476)
T cd03791 359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTG-FVFEGYNADA 431 (476)
T ss_pred CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCe-EEeCCCCHHH
Confidence 555556678999999999999999 9999999999999996544433332221 11 23 332 47888
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 849 YEERAVSLAL---DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 849 ~~~~~~~l~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+++++.++.. +++.+.+++++..+. .|+++.+++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~~-----~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMAQ-----DFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhcc-----CCChHHHHHHHHHHHh
Confidence 8888877664 677777777665442 4999999999999996
No 153
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.62 E-value=6.9e-15 Score=163.78 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=136.6
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
...+.+++.++++.+++. .|+.+.+++++.++.+. |+.+|+++|.|+. .+.+.+.....++ ++|.|.|.++.++
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~-~~~~~~~~~~~~~--~~v~~~g~~~~~~ 287 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPE-KEELKELAKALGL--DNVTFLGRVPKEE 287 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCccc-HHHHHHHHHHcCC--CcEEEeCCCChHH
Confidence 344555667788887765 59999999999998877 8999999998876 6677777677776 5799999999999
Q ss_pred HHHhccCCcEEecCCCCCC------hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHH
Q 002431 783 HIRRSSLADLFLDTPLCNA------HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVS 855 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~~~g------~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~~~ 855 (922)
...+|+.+|+++.|+..++ +++++|||++|+|||+.+......-+.. |-.+.++. .|.+++++.+.+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~------~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE------AGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc------CCcceEeCCCCHHHHHHHHHH
Confidence 9999999999999976553 6678999999999998776544433321 12221333 489999999999
Q ss_pred HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHH
Q 002431 856 LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 856 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (922)
+..|++.+..++++.++... ..|+++.+++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 393 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVE--EKFSREKLAERL 393 (394)
T ss_pred HHhChHHHHHHHHHHHHHHH--HhhcHHHHHHhc
Confidence 99999999999999988763 359999888765
No 154
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.62 E-value=5e-15 Score=163.34 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=129.6
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.++| ..|+.+.+++++.++.++.|+.+|.|+|.|+. ...+.....+.++ .++|.|.|. ..+....|+.+|
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad 280 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE-EEKLKELIEELGL-EDYVFLKGY--TRDLDEVYQKAQ 280 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch-HHHHHHHHHHcCC-cceEEEcCC--CCCHHHHHhhhh
Confidence 34455554 56999999999999999999999999999876 7778888889999 589999995 456777899999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCC-cchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
++|+|+.++| |++++|||++|+|||+.... .... ++ .-|-.+ ++++ |++++++++.++++|++.+..++
T Consensus 281 ~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~-----~v-~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~ 353 (372)
T cd04949 281 LSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSE-----II-EDGENG-YLVPKGDIEALAEAIIELLNDPKLLQKFS 353 (372)
T ss_pred EEEecccccccChHHHHHHhCCCCEEEecCCCCcHH-----Hc-ccCCCc-eEeCCCcHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999888 99999999999999976532 1111 11 125556 5555 89999999999999999999999
Q ss_pred HHHHhhcccCCCCChHHHHHH
Q 002431 868 NKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~ 888 (922)
++.++... .|+.+.++++
T Consensus 354 ~~a~~~~~---~~s~~~~~~~ 371 (372)
T cd04949 354 EAAYENAE---RYSEENVWEK 371 (372)
T ss_pred HHHHHHHH---HhhHHHHHhc
Confidence 99988643 4887776654
No 155
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=4.9e-12 Score=139.37 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME 316 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (922)
.+++.+++.|...|++++|++++++++...|..++.|...|.++...|++.+|.+.++.+..+++.|-.+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCc-------hhh--hhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 317 WNMLPAAASYYKATLAVTTGLS-------APF--NNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~-------~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.|+.++|.+.+......+.+.. -.| ..-|.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777766544432110 012 23466667777777777766666554
No 156
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.58 E-value=8.5e-15 Score=141.65 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=131.7
Q ss_pred cCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh-CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
|...+.+++.++++.+++. .|+...+++++..+.++ .|+..|+++|.++. ...+...+...++ .++|.|.|..+.
T Consensus 6 ~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~i~~~~~~~~ 83 (172)
T PF00534_consen 6 REKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNL-KENIIFLGYVPD 83 (172)
T ss_dssp HHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTC-GTTEEEEESHSH
T ss_pred HHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-ccccccccccccc-cccccccccccc
Confidence 4455677788888888876 49999999999998875 99999999996655 6778899999999 589999999888
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 857 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~ 857 (922)
.++..+|+.+||+|.|+.++| |++++|||++|+|||+.....+..-+.. +.++ ++. .|++++++.+.++.
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND------GVNG-FLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT------TTSE-EEESTTSHHHHHHHHHHHH
T ss_pred cccccccccceeccccccccccccccccccccccceeeccccCCceeecc------ccce-EEeCCCCHHHHHHHHHHHH
Confidence 899999999999999998888 9999999999999998776555444432 4445 444 46799999999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 002431 858 LDRQKLQALTNKLKSV 873 (922)
Q Consensus 858 ~d~~~~~~~~~~~~~~ 873 (922)
.|++.+..|+++.|++
T Consensus 157 ~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 157 NDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999998874
No 157
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.3e-11 Score=122.63 Aligned_cols=287 Identities=17% Similarity=0.131 Sum_probs=133.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 120 (922)
.-+..|+|.+|.+...+.-+..+....++..-+.+.-+.|+++.|-.++.++-+..++ ........+......|+++.|
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 3344455555555555555544444445555555555555555555555555555222 233444555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---H-----HHHHHHHHHHHcCCHHHHHHHH
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA---I-----AWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~-----~~~~la~~~~~~g~~~~A~~~~ 192 (922)
.....++++..|.++.+......+|...|++.+...++.++-+..--+. . +|..+-.-....+..+.-...+
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 5555555555555555555555555555555555555554444321110 0 1111111111111111111222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 272 (922)
+..-..-..++.+...++.-+..+|+.++|.++.++.++..-+.. .
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------------------------------L 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------------------------------L 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------------------------------H
Confidence 222222223344444444444444444444444444444433322 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG 352 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 352 (922)
... .-...-++...=++..++.++..|+++..+..+|.++.+.+.+.+|..+|+.+++..|+ ...+..+|.++.+.|
T Consensus 299 ~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g 375 (400)
T COG3071 299 CRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLG 375 (400)
T ss_pred HHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcC
Confidence 111 11123344445555555555555555555555555555555555555555555544433 233455555555556
Q ss_pred CHHHHHHHHHHHH
Q 002431 353 NYADAISCYNEVL 365 (922)
Q Consensus 353 ~~~~A~~~~~~al 365 (922)
+..+|.+.+++++
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 6555555555555
No 158
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.58 E-value=3.7e-14 Score=154.95 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=110.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
+++.+--...|+.+.+++++.++ | .+|+|+|+|+. .+.+++ +. .++|+|.|.++.++...+|..+|++
T Consensus 198 il~~G~~~~~K~~~~li~a~~~~----~-~~l~ivG~g~~-~~~l~~-----~~-~~~V~~~g~~~~~~~~~~~~~ad~~ 265 (351)
T cd03804 198 YLSVGRLVPYKRIDLAIEAFNKL----G-KRLVVIGDGPE-LDRLRA-----KA-GPNVTFLGRVSDEELRDLYARARAF 265 (351)
T ss_pred EEEEEcCccccChHHHHHHHHHC----C-CcEEEEECChh-HHHHHh-----hc-CCCEEEecCCCHHHHHHHHHhCCEE
Confidence 34333333569999999998764 5 78999999875 555554 55 5899999999999999999999999
Q ss_pred ecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHH-HHHHHHHHH
Q 002431 794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQ-KLQALTNKL 870 (922)
Q Consensus 794 l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~-~~~~~~~~~ 870 (922)
|.|+. +| |++++|||+||+|||+........-+.. |-.+.++ ..|++++++.+..+.+|++ .++.+++..
T Consensus 266 v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~------~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 266 LFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVID------GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred EECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC------CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 99988 77 9999999999999997654332222211 2233133 2588999999999999984 444444433
Q ss_pred HhhcccCCCCChHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNL 889 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~ 889 (922)
+ .|+.++|.+++
T Consensus 339 ~-------~~~~~~~~~~~ 350 (351)
T cd03804 339 E-------RFSESRFREKI 350 (351)
T ss_pred H-------hcCHHHHHHHh
Confidence 2 28999988875
No 159
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2.3e-11 Score=122.59 Aligned_cols=292 Identities=16% Similarity=0.082 Sum_probs=216.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g 81 (922)
...|..-+..|+|.+|.+...+.-+..+....++..-+.+.-+.|+++.|-.++.++-+..++ .......++......|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 345666778899999999999988877877888888899999999999999999999988544 4667888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD--------AHSNLGNLMKAQGLVQE 153 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~la~~~~~~g~~~~ 153 (922)
+++.|..-..++++..|.++.+......+|.+.|++.+...++.++.+..--+.. ++..+-+-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999999999998876532222 11111111111222222
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 154 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
-...++..-..-..++.....++.-+...|+.++|.++.+++++..-+. .....+ -...-++...-++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~--~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLI--PRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHH--hhcCCCCchHHHHHHHHHHHhC
Confidence 2234444433444567777888999999999999999999999876543 222111 2234566677777777777776
Q ss_pred CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 234 PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 234 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
|+ +..+..+|..+.+.+.|.+|..+|+.+++..|+.. .+..+|.++.+.|+..+|.+..++++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66 66677777777777777777777777776666543 666777777777777777777777664
No 160
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=1e-13 Score=152.75 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=123.8
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec-CChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.|.++|++++.. ++...++. .|+...+++++. ..|+.+++++| .++...+.+++.+.+.+ ++|+|+|++
T Consensus 192 ~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~~~~~~~~l~~~~~~~~---~~v~~~g~~ 264 (380)
T PRK13609 192 IYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGKNEALKQSLEDLQETNP---DALKVFGYV 264 (380)
T ss_pred HHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCCCHHHHHHHHHHHhcCC---CcEEEEech
Confidence 678899986643 33333433 477777777654 34888887764 34333677777776554 689999986
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
+ +...+|+.+|+++. ..||+|++|||++|+|||+.....-........+...|. . ++..|++++.+.+.++.+
T Consensus 265 ~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~-~-~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 265 E--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGA-A-VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred h--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCc-E-EEECCHHHHHHHHHHHHC
Confidence 4 45567889999984 357899999999999999854211111222234444455 2 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
|++.+++++++.++.. ..++.+.+++.+++.+..
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 338 DDMKLLQMKEAMKSLY---LPEPADHIVDDILAENHV 371 (380)
T ss_pred CHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhhh
Confidence 9999999999887753 337999999998887654
No 161
>PHA01633 putative glycosyl transferase group 1
Probab=99.56 E-value=5.3e-14 Score=146.49 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=120.4
Q ss_pred CcCCCCCC-CCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCC----eEEEEecCChhhHHHHHHHHHHcCCCCCceEEc
Q 002431 703 KRSDYGLP-EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 703 ~r~~~~l~-~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~ 775 (922)
.|++++.+ ++.++|+.++|+ .|+++.++++|.++.++.|+ .+|+++|.+ ...++++ .++|.|+
T Consensus 137 ~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~---------~~~~l~l-~~~V~f~ 206 (335)
T PHA01633 137 LKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK---------QFTQLEV-PANVHFV 206 (335)
T ss_pred HHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH---------HHHHcCC-CCcEEEE
Confidence 44445543 355778888875 59999999999999888885 477777631 2356788 5899999
Q ss_pred ---CCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHH--HHH-H----------hcCCC
Q 002431 776 ---DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG--SLC-L----------ATGLG 838 (922)
Q Consensus 776 ---~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~-~----------~~g~~ 838 (922)
|.++..+...+|+.+|+||.||.+|| |++++|||+||+|||+...+.+.+-+|. ..| . .-|.
T Consensus 207 g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~- 285 (335)
T PHA01633 207 AEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ- 285 (335)
T ss_pred ecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-
Confidence 55677889999999999999999999 9999999999999998866655554441 011 0 0011
Q ss_pred Cccc-cCCHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 839 EEMI-VNSMKEYEERAVSLA--LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 839 ~~~i-~~~~~~~~~~~~~l~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.+++ ..|++++++++.++. .|++.+ +..+++... .||++...++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~---~f~~~~~~~~~~ 334 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREER---SMKLKELAK---KYDIRNLYTRFL 334 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhh---hHHHHHHHH---hcCHHHHHHHhh
Confidence 1012 248889988888773 344433 444555443 399988887765
No 162
>PLN02275 transferase, transferring glycosyl groups
Probab=99.55 E-value=1.5e-13 Score=150.26 Aligned_cols=133 Identities=11% Similarity=0.032 Sum_probs=102.5
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHH-----------------hhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEE
Q 002431 714 FIFACFNQ--LYKMDPEIFNTWCNIL-----------------RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 714 ~~~~~~~~--~~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f 774 (922)
++++..+| ..|+.+.+++++..+. +..|+.+|+|+|+|+. ++.+++.++++|++ + |+|
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~-v~~ 290 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ-KAMYEEKISRLNLR-H-VAF 290 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC-HHHHHHHHHHcCCC-c-eEE
Confidence 45556666 4699999999988764 2368999999999987 89999999999994 5 777
Q ss_pred cC-CCCcHHHHHhccCCcEEecCC--C-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHH
Q 002431 775 TD-VAMKQEHIRRSSLADLFLDTP--L-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY 849 (922)
Q Consensus 775 ~~-~~~~~~~~~~~~~~dv~l~~~--~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~ 849 (922)
.+ .++.++...+|+.+|||+.|+ . .+| |++++|||+||+|||+........-+ . -|.++ +++.|++++
T Consensus 291 ~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv-----~-~g~~G-~lv~~~~~l 363 (371)
T PLN02275 291 RTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELV-----K-DGKNG-LLFSSSSEL 363 (371)
T ss_pred EcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHc-----c-CCCCe-EEECCHHHH
Confidence 55 689999999999999999643 2 256 99999999999999976543322222 1 16666 666788888
Q ss_pred HHHHHHH
Q 002431 850 EERAVSL 856 (922)
Q Consensus 850 ~~~~~~l 856 (922)
++++.+|
T Consensus 364 a~~i~~l 370 (371)
T PLN02275 364 ADQLLEL 370 (371)
T ss_pred HHHHHHh
Confidence 8877765
No 163
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.55 E-value=1.8e-13 Score=150.21 Aligned_cols=176 Identities=14% Similarity=0.066 Sum_probs=125.3
Q ss_pred CCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh----hCCCeE-EEEecCChhhHHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR----RVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~----~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f 774 (922)
..|+++|++++.++++.+++. .|....+++++.+++. ..|+.+ ++++|.++...+.|++ ... .++|.|
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~----~~~-~~~v~~ 269 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLES----RDW-KIPVKV 269 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHh----hcc-cCCeEE
Confidence 478899999888877777754 5888999998887652 245554 5666766432444443 333 357999
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAV 854 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~ 854 (922)
+|+++ +...+|+.+|+++.+ .||.|++|||+||+|||+.+-....+..+...+...|.. +...|++++++++.
T Consensus 270 ~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g--~~~~~~~~la~~i~ 342 (382)
T PLN02605 270 RGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFG--AFSESPKEIARIVA 342 (382)
T ss_pred Eeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCce--eecCCHHHHHHHHH
Confidence 99975 677789999999964 378899999999999998753222223334445555663 34589999999999
Q ss_pred HHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 855 SLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 855 ~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
+|..| ++.+++|+++.++... ..+.+..++.+.+.
T Consensus 343 ~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~~ 378 (382)
T PLN02605 343 EWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHEL 378 (382)
T ss_pred HHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 99988 9999999999988642 25566666665543
No 164
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.54 E-value=2.2e-13 Score=148.91 Aligned_cols=319 Identities=14% Similarity=0.112 Sum_probs=188.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C---CC-----------
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A---MS----------- 600 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~----------- 600 (922)
+||-+++...+.|- +....+.+.+.+.++||++++..... ..+.++..+..++.++ + .+
T Consensus 2 ~~i~i~~~g~gG~~--~~~~~la~~L~~~g~ev~vv~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHV--FPALALAEELKKRGWEVLYLGTARGM---EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhh--hHHHHHHHHHHhCCCEEEEEECCCch---hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 56777775554333 35557777777778999988764311 1222333343343332 1 11
Q ss_pred ---HHHHHHHHHhCCCeEEEcCCCcCCCCchhh---hhc--CCCceEEeccc-cCCCCCCCcccEEEecCccCCcCccC-
Q 002431 601 ---SDMIAKLINEDKIQILINLNGYTKGARNEI---FAM--QPAPIQVSYMG-FPGTTGASYIDYLVTDEFVSPLRYAH- 670 (922)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~---~~~--~~apvq~~~~g-~~~t~g~~~~d~~~~d~~~~~~~~~~- 670 (922)
...+.+.|++.++||+ |+++....+ ++. ...|+.++-.. .|+ ....+.|..+|.+++......
T Consensus 77 ~~~~~~~~~~ik~~~pDvv-----~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--~~~r~~~~~~d~ii~~~~~~~~ 149 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVV-----VGFGGYVSGPGGLAARLLGIPLVIHEQNAVPG--LANKLLARFAKKVATAFPGAFP 149 (357)
T ss_pred HHHHHHHHHHHHhcCCCEE-----EECCCcchhHHHHHHHHcCCCEEEEcCCCCcc--HHHHHHHHHhchheECchhhhh
Confidence 1345778889999999 555432222 222 23466543211 111 011223345566554433110
Q ss_pred -CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHH-HHHHHHHhhCCCeEEE
Q 002431 671 -IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIF-NTWCNILRRVPNSALW 746 (922)
Q Consensus 671 -~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~ 746 (922)
....++..+|+.. .. ....+ ...+.+++++++.++++.+++. .|....++ +++.++.+. | ..++
T Consensus 150 ~~~~~~i~vi~n~v------~~--~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~ 217 (357)
T PRK00726 150 EFFKPKAVVTGNPV------RE--EILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIH 217 (357)
T ss_pred ccCCCCEEEECCCC------Ch--Hhhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEE
Confidence 1112333333221 11 11111 1233456777676776666654 35544444 888776543 5 5667
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcch--
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMA-- 824 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~-- 824 (922)
++|.|+ .+.+.+... .|+ + |.|.|++ .++..++..+|+++.++ |++|++|||++|+|||+.+.....
T Consensus 218 ~~G~g~--~~~~~~~~~-~~~--~-v~~~g~~--~~~~~~~~~~d~~i~~~---g~~~~~Ea~~~g~Pvv~~~~~~~~~~ 286 (357)
T PRK00726 218 QTGKGD--LEEVRAAYA-AGI--N-AEVVPFI--DDMAAAYAAADLVICRA---GASTVAELAAAGLPAILVPLPHAADD 286 (357)
T ss_pred EcCCCc--HHHHHHHhh-cCC--c-EEEeehH--hhHHHHHHhCCEEEECC---CHHHHHHHHHhCCCEEEecCCCCCcC
Confidence 788875 355555555 777 2 9999986 56777889999999643 679999999999999987642111
Q ss_pred -hhhHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 825 -TRVAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 825 -~r~~~~~~~~~g~~~~~i~-~~--~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
....+..+...|..- ++. .| ++++++++.++.+|++.++.+++..++.. ..++.+++++.+++..+
T Consensus 287 ~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 287 HQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred cHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 111234555556643 443 34 89999999999999999999999998864 34888888888776543
No 165
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=7.7e-13 Score=135.13 Aligned_cols=186 Identities=20% Similarity=0.148 Sum_probs=131.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 309 (922)
...++.+|..+...|++++|+..+++++..+|++. .+++.+|.++...|++++|+..++++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 66777777777777777777777777777777654 46677777777777777777777777777776655 5677
Q ss_pred HHHHHHHc--------CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 310 LGNIYMEW--------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 310 la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+|.++... |++++|.+.|++++..+|++...+..+..+... ... .......+|..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHHHHH
Confidence 77777665 566677777777777666665443222211110 000 01123467888
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPTM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+...|++.+|+..++++++..|+. +.+++.+|.++.+.|++++|..+++.+....|+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888899999999999999886653 578889999999999999999988887766653
No 166
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=1.5e-12 Score=132.90 Aligned_cols=188 Identities=19% Similarity=0.127 Sum_probs=124.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---H
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---A 103 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 103 (922)
+..+..++.+|..++..|++++|+..|+++++.+|.++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34577788888888888888888888888888877764 56778888888888888888888888888776554 5
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 104 WSNLASAYMRK--------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175 (922)
Q Consensus 104 ~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 175 (922)
++.+|.++... |++++|++.+++++..+|++..+...+..+....+ . .......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHH
Confidence 77777777765 66777777777777777776554432222211100 0 01112355
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 176 AGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
+..+...|++.+|+..++++++..|+. +.+++.++.++...|++++|..+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666677777777777766665543 35666666666666776666666666555443
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=5.4e-12 Score=118.98 Aligned_cols=187 Identities=22% Similarity=0.162 Sum_probs=166.9
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
..++....+-.+..+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34555556667777788889999999999998888899999999999999999999999999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC---C
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---H 421 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 421 (922)
..+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|++++|.-++++++-+.|.++..+..++.+++-+| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999988876 7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
++-|.++|.++++++|.+..+++.+..+..
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 788999999999999988888887765543
No 168
>PHA01630 putative group 1 glycosyl transferase
Probab=99.50 E-value=2.3e-13 Score=144.22 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=118.1
Q ss_pred cEEEEecCC--CCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 713 KFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 713 ~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
.++++..++ ..|+.+.++++|+.+.++.|+.+++++|+++. ..++ .++. . +.|.++.++...+|+.+
T Consensus 142 ~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-~~~l------~~~~-~---~~~~v~~~~l~~~y~~a 210 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-DPRL------FGLN-G---VKTPLPDDDIYSLFAGC 210 (331)
T ss_pred CEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-chhh------cccc-c---eeccCCHHHHHHHHHhC
Confidence 345544444 57999999999999998889999999996643 2222 2341 2 24557889999999999
Q ss_pred cEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCC--------------------CccccCCHHHH
Q 002431 791 DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG--------------------EEMIVNSMKEY 849 (922)
Q Consensus 791 dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~--------------------~~~i~~~~~~~ 849 (922)
|||+.||.++| |++.+|||+||+|||+.....+..-+.. |.+ +.++..|.++.
T Consensus 211 Dv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~------~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~ 284 (331)
T PHA01630 211 DILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS------NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDA 284 (331)
T ss_pred CEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC------CCceEEeeecccccccccCCcccccccCCCHHHH
Confidence 99999999999 9999999999999997654333222211 111 11334577888
Q ss_pred HHHHHHHhcC---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 850 EERAVSLALD---RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 850 ~~~~~~l~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.+.+++++.| ++.++.++.+.+... ..||++..++++++.|++
T Consensus 285 ~~~ii~~l~~~~~~~~~~~~~~~~~~~~---~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 285 YQKLLEALANWTPEKKKENLEGRAILYR---ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhc
Confidence 8999998887 455555565555443 359999999999999964
No 169
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.50 E-value=5.8e-13 Score=145.55 Aligned_cols=302 Identities=14% Similarity=0.119 Sum_probs=173.7
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--C---CC------------
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--A---MS------------ 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~------------ 600 (922)
||-+..+..+.|- +....+.+.+.+.++||++++...... ...+......++.++ . ..
T Consensus 1 ~~~~~~~~~gG~~--~~~~~la~~l~~~G~ev~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHI--FPALALAEELRERGAEVLFLGTKRGLE---ARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhh--hHHHHHHHHHHhCCCEEEEEECCCcch---hhcccccCCceEEEEecCcCCCChHHHHHHHHHHH
Confidence 3444554444333 355577788888889999887543211 111222222222221 1 11
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhh----hh-cCCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCCC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEI----FA-MQPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHIY 672 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~----~~-~~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~~ 672 (922)
...+.+.|++.++||+| +++....+ .+ ....|+.+.-.+ ...+. ..+-+..+|.+++++.....+
T Consensus 76 ~~~~~~~~~i~~~~pDvI~-----~~~~~~~~~~~~~a~~~~~p~v~~~~~--~~~~~~~~~~~~~~~~vi~~s~~~~~~ 148 (350)
T cd03785 76 KGVLQARKILKKFKPDVVV-----GFGGYVSGPVGLAAKLLGIPLVIHEQN--AVPGLANRLLARFADRVALSFPETAKY 148 (350)
T ss_pred HHHHHHHHHHHhcCCCEEE-----ECCCCcchHHHHHHHHhCCCEEEEcCC--CCccHHHHHHHHhhCEEEEcchhhhhc
Confidence 12467888999999995 43322221 12 123577553111 11111 111223356666665443221
Q ss_pred --ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHH-HHHHHHHHhhCCCeE-EE
Q 002431 673 --SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEI-FNTWCNILRRVPNSA-LW 746 (922)
Q Consensus 673 --~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~-~~~~~~il~~~p~~~-l~ 746 (922)
.+++..+|+... . ....+ .+.|.+++++++.++++.+++. .|....+ ++++..+. + ++.. ++
T Consensus 149 ~~~~~~~~i~n~v~------~--~~~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~ 216 (350)
T cd03785 149 FPKDKAVVTGNPVR------E--EILAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIH 216 (350)
T ss_pred CCCCcEEEECCCCc------h--HHhhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEE
Confidence 334444443211 0 11111 1127788888887777666543 3554444 46665553 2 4555 45
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---
Q 002431 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM--- 823 (922)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~--- 823 (922)
++|.+ . .+.+++.++++ .++|.|.|++ .+...+|..+|+++.++ |++|++|||++|+|||+.+....
T Consensus 217 i~G~g-~-~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~s---g~~t~~Eam~~G~Pvv~~~~~~~~~~ 286 (350)
T cd03785 217 QTGKG-D-LEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISRA---GASTVAELAALGLPAILIPLPYAADD 286 (350)
T ss_pred EcCCc-c-HHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEECC---CHhHHHHHHHhCCCEEEeecCCCCCC
Confidence 66776 3 67788877765 3789999985 67778899999999543 67899999999999998653221
Q ss_pred hhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 824 ATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
.....+..+...|..- ++.. |++++++++..+..|++.++.++++.++..
T Consensus 287 ~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 287 HQTANARALVKAGAAV-LIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred cHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 1111124455556544 4442 799999999999999999999999988764
No 170
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=4e-12 Score=145.77 Aligned_cols=222 Identities=13% Similarity=0.008 Sum_probs=135.1
Q ss_pred hCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (922)
.+|.+..++..++..+...+++++|+..++..++..|+....++.+|.++.+.+++.++..+ .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 45788899999999999999999999999999999999999999999999999887776665 5544433322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
++ .+.+.+...+...+.+..+++.+|.+|-+.|+.++|...|+++++.+|+++.+++++|..|... +.++
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22 2333333333334444455555555555555555555555555555555555555555555555 5555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------------hhHHHhHHHHH
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---------------------AIAFGNLASTY 246 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------------------~~~~~~l~~~~ 246 (922)
|++++.+++.. +...+++.++.+++.+++...|+ ...+.-+-..|
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 55555555443 33344555555555555555444 12222233344
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
...++|++++.+++.+++.+|.+..+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455555555555555555555555555555544
No 171
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=6e-13 Score=122.65 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
..+|+++++.+|++ +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45667777777664 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 88888888888888888888888888888888888888876655443
No 172
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.49 E-value=1e-12 Score=143.87 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=191.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccC----ceEECCC--CC--------H
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE----HFVDVSA--MS--------S 601 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~--------~ 601 (922)
+||.++.+ ..|-.-.+.++++.+.+. .|++.+..++... . ..+.+..... ....+.+ -+ .
T Consensus 1 ~~i~~~~g---tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 75 (365)
T TIGR00236 1 LKVSIVLG---TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-E-MLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNML 75 (365)
T ss_pred CeEEEEEe---cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-H-HHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHH
Confidence 46777664 466667888999988764 6888888888654 2 3333333332 1123322 12 2
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCC----C-ccc----EEEecCccCCc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGA----S-YID----YLVTDEFVSPL 666 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~----~-~~d----~~~~d~~~~~~ 666 (922)
..+.+.+++.++||+ |++|.+...++ ....|+.....|- .|.+. + .+. ..++|.+++|+
T Consensus 76 ~~l~~~l~~~~pDiv-----~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~~~~~~~~r~~~~~~ad~~~~~s 149 (365)
T TIGR00236 76 EGLEELLLEEKPDIV-----LVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYSPMPEEINRQLTGHIADLHFAPT 149 (365)
T ss_pred HHHHHHHHHcCCCEE-----EEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCCCCccHHHHHHHHHHHHhccCCC
Confidence 468889999999999 88887553332 2335875433222 22111 1 110 11467777776
Q ss_pred CccC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHH
Q 002431 667 RYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNI 736 (922)
Q Consensus 667 ~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~i 736 (922)
+... .-.+++..+++..+.... ...........++++|. ++.+++++..|. .|+.+.+++++.++
T Consensus 150 ~~~~~~l~~~G~~~~~I~vign~~~d~~~----~~~~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l 224 (365)
T TIGR00236 150 EQAKDNLLRENVKADSIFVTGNTVIDALL----TNVEIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREI 224 (365)
T ss_pred HHHHHHHHHcCCCcccEEEeCChHHHHHH----HHHhhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHH
Confidence 6422 112233333332211000 00000111235566764 344666666543 37899999999999
Q ss_pred HhhCCCeEEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 737 LRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 737 l~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
.++.|+.++++.+.+ +..... ..+..+. .++|.|.|..+..+++.++..+|+++.++ | ..++|||++|+||
T Consensus 225 ~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---g-~~~~EA~a~g~Pv 296 (365)
T TIGR00236 225 VEEFEDVQIVYPVHLNPVVREP---LHKHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS---G-GVQEEAPSLGKPV 296 (365)
T ss_pred HHHCCCCEEEEECCCChHHHHH---HHHHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC---h-hHHHHHHHcCCCE
Confidence 888899988887544 221222 2334566 47899999999999999999999998655 3 3469999999999
Q ss_pred eeec--CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 816 ITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 816 v~~~--~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
|+.. |.... +. ..|..- ++..|++++++++.++.+|++.+.+++..... . ......++.++.++.
T Consensus 297 I~~~~~~~~~e------~~-~~g~~~-lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~-~--g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 297 LVLRDTTERPE------TV-EAGTNK-LVGTDKENITKAAKRLLTDPDEYKKMSNASNP-Y--GDGEASERIVEELLN 363 (365)
T ss_pred EECCCCCCChH------HH-hcCceE-EeCCCHHHHHHHHHHHHhChHHHHHhhhcCCC-C--cCchHHHHHHHHHHh
Confidence 9863 22111 11 125433 55579999999999999999888887665421 1 112344555555544
No 173
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=9.1e-12 Score=142.87 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=181.0
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHH
Q 002431 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA 243 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 243 (922)
.+|.+..++..++..+...+++++|++.++..++..|+....++.+|.++...+++.++..+ .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 36778888888888888888888888888888888888888888888888888886666554 33333
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHH
Q 002431 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 323 (922)
.....++ .+++++...+...+.+..+++.+|.+|.++|+.++|...|+++++.+|+++.+++++|..|... +.++|
T Consensus 93 --~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 --FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred --cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2333444 4555555566567777778999999999999999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
..++.+++.. +...+++.++.+++.+.+..+|++.+.+..+-......-....+
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------ 222 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------ 222 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence 9999988764 66677899999999999999988877655543322222111111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
...+.-+-..|...+++++++.+++.+++.+|++..+...++.++.
T Consensus 223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344455566677777777777777777777777777777777665
No 174
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.48 E-value=2e-12 Score=141.99 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=128.0
Q ss_pred CcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.|.++|++++.. ++...++. .|+...+++++ ++..|+.+++++ |.++...+.+++. .+. .++|.|.|++
T Consensus 192 ~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~-~~~v~~~G~~ 264 (391)
T PRK13608 192 WLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAK---FKS-NENVLILGYT 264 (391)
T ss_pred HHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHH---hcc-CCCeEEEecc
Confidence 566789976654 34444544 48888888875 345577888666 4332223344432 344 3689999986
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
.+...+|+.+|+++. -.||+|+.|||++|+|+|+...........+-++...|.. ++..|.+++++.+.+|.+
T Consensus 265 --~~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g--~~~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 265 --KHMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG--KIADTPEEAIKIVASLTN 337 (391)
T ss_pred --chHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE--EEeCCHHHHHHHHHHHhc
Confidence 456677899999995 2478999999999999998742222234445566666764 456799999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
|++.+.+|+++.++.. ..++.+..++.+++.+..+-+
T Consensus 338 ~~~~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 338 GNEQLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhh
Confidence 9999999999999864 339999999999888765544
No 175
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=3.8e-10 Score=139.85 Aligned_cols=372 Identities=17% Similarity=0.073 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~ 146 (922)
..+...+..+...|++.+|...+..+-.. +.-.......+......|+++.+...++.+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34455566677788888887766554211 11123344556667778888877777655411 11233445567788888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-----DAYLNLGNV 212 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~ 212 (922)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+... .+...++.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999888664221 123445567788899999999999999987544322 245678888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--------CCcHHHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCD--------PRFLEAYNNLG 277 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~ 277 (922)
+...|++++|...+++++..... ...+..++.++...|++++|...+++++... +.....+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999865321 3456788999999999999999999988531 11223456778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc--hhh-h----hHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS--APF-N----NLA 345 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~-~----~la 345 (922)
.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++........ ..+ . ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 8899999999999999998875321 234566788899999999999999999876533211 111 1 122
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASA 415 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 415 (922)
..+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++... .....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 445568999999999877665332222 125678999999999999999999998762 1234578889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
+...|+.++|...+.+++++.....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999875543
No 176
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=1.8e-12 Score=119.54 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
.+|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666653 4456677777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666666655543
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.2e-10 Score=111.86 Aligned_cols=308 Identities=15% Similarity=0.092 Sum_probs=229.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|.........++.+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+...+.....-........+.+.+..+++..+..+.++.- ..+......+.|.+.++.|+++.|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9888765422223345556667777888877776665532 12556778889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 276 (922)
+-.-++++.++.+.+++..|+++..++++. .|. .-.......+-. .|+. +.+-..+ -.++++..
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh~Sa------l~eAfNLK 247 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLHQSA------LVEAFNLK 247 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHHHHH------HHHHhhhh
Confidence 888999999999999999999998888764 343 000000001000 1111 1111111 13466677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCH
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY 354 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 354 (922)
+.++.+.++++.|.+.+..+--.. .-+|..+.+++..-. .+++.+...-+.-.+.++|-..+++-++-.+|++..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 888899999999988775542221 124556666664432 35566777777778888998888999999999999888
Q ss_pred HHHHHHHHH
Q 002431 355 ADAISCYNE 363 (922)
Q Consensus 355 ~~A~~~~~~ 363 (922)
+-|...+-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888776643
No 178
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.45 E-value=1.4e-12 Score=142.51 Aligned_cols=304 Identities=16% Similarity=0.164 Sum_probs=169.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceE--ECCC---CC------------
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFV--DVSA---MS------------ 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~------------ 600 (922)
||.++.++-..|-. ....+.+.+.+.++||++++. +.. . ...........++ +... .+
T Consensus 2 ~i~~~~g~~~g~~~--~~~~La~~L~~~g~eV~vv~~-~~~-~-~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIF--PALAVAEELIKRGVEVLWLGT-KRG-L-EKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHh--HHHHHHHHHHhCCCEEEEEeC-CCc-c-hhcccccCCCceEEEeccCcCCCChHHHHHHHHHHH
Confidence 57767665443332 334677777777899999864 211 1 1111122222222 2221 11
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCCCccc
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHIYSEK 675 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~~~e~ 675 (922)
...+.+.+++.++||+|...+.+ +....++. ...|+....++ . ..+. ...-+..+|.+++.......+.+.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~--~~~~~~~~~~~~~p~v~~~~~-~-~~~~~~~~~~~~~d~ii~~~~~~~~~~~~ 152 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYV--SGPAGLAAKLLGIPLFHHEQN-A-VPGLTNKLLSRFAKKVLISFPGAKDHFEA 152 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcc--cHHHHHHHHHcCCCEEEECCC-C-CccHHHHHHHHHhCeeEECchhHhhcCCc
Confidence 13578889999999995433221 11111111 23476532211 1 1111 111123455555554432222211
Q ss_pred eeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHH-HHHHHHHHHhhCCCeEE-EEecCC
Q 002431 676 LVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPE-IFNTWCNILRRVPNSAL-WLLRFP 751 (922)
Q Consensus 676 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l-~~~~~~ 751 (922)
..+|+ +... ....+ ...+.++|++++.++++.+++. .|.... +++++.++.+. +.++ +++|++
T Consensus 153 -~~i~n------~v~~--~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~ 219 (348)
T TIGR01133 153 -VLVGN------PVRQ--EIRSL--PVPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKN 219 (348)
T ss_pred -eEEcC------CcCH--HHhcc--cchhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcc
Confidence 12222 1111 01111 1224567888888888877654 355444 34676666443 3444 344444
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchh--hhHH
Q 002431 752 AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT--RVAG 829 (922)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~--r~~~ 829 (922)
+ .+.+++.+.++|+ .++|.|.. . +...+|..+|+++.+ +|++|++|||++|+|||+.+-+...+ ....
T Consensus 220 ~--~~~l~~~~~~~~l-~~~v~~~~---~-~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 220 D--LEKVKNVYQELGI-EAIVTFID---E-NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred h--HHHHHHHHhhCCc-eEEecCcc---c-CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 2 4788888888898 46777762 2 667778999999964 36789999999999999865332221 2223
Q ss_pred HHHHhcCCCCcccc-C--CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 830 SLCLATGLGEEMIV-N--SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 830 ~~~~~~g~~~~~i~-~--~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
.++...|..- ++. . +++++++++.++..|++.+++++++.++..
T Consensus 290 ~~i~~~~~G~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 290 KFLEDLGAGL-VIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred HHHHHCCCEE-EEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 4565544433 442 2 499999999999999999999999998754
No 179
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=4.8e-12 Score=123.19 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=107.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhCC--HHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-KEIGR--VTDAIQ 393 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~ 393 (922)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|+++..+..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566778888888888888888888888888888999999999999999999999999999999875 67677 589999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.++++++.+|+++.+++.+|..+.+.|++++|+..|+++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999887754
No 180
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.2e-11 Score=118.42 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC
Q 002431 289 AIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (922)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (922)
+...+-.....+|++.++ ..++..+...|+-+.+..+..+.....|.+......+|......|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444455555566666666 6667777777777777777777666666666666667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 369 PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|..++.++....+.+..+..|+..
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhcccCChhhHhH
Q 002431 449 TLQCVCSWEDRDR 461 (922)
Q Consensus 449 ~~~~~~~~~~a~~ 461 (922)
.....|+..+|+.
T Consensus 211 ~~~~~g~~~~A~~ 223 (257)
T COG5010 211 VVGLQGDFREAED 223 (257)
T ss_pred HHhhcCChHHHHh
Confidence 7777666555544
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=5.4e-10 Score=138.53 Aligned_cols=370 Identities=15% Similarity=0.038 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE-LRPNFADAWSNLASAYM 112 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~ 112 (922)
..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34445566777888988888766544111 11233445566677788888887777655411 11223445566778888
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGL 178 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 178 (922)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+.. ..+...++.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999888664221 12344567788889999999999999998854432 2356778888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C----hhHHHhHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N----AIAFGNLA 243 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~----~~~~~~l~ 243 (922)
+...|++++|...+++++...... ...+..++.++...|++++|...+++++.... . ...+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998653321 23567789999999999999999999887421 1 23455778
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHH----hHH
Q 002431 244 STYYERGQADMAILYYKQAIGCDP-----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALT----NLG 311 (922)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la 311 (922)
.++...|++++|...+.+++.... .....+..++.++...|++++|...+.++....... ..... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 889999999999999999875422 124456678899999999999999999987753321 11111 122
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCch----hhhhHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSA----PFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGNT 381 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 381 (922)
..+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++... .....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4455688999999998776553322221 14578899999999999999999998752 1234578889999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+...|+.++|...+.++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998654
No 182
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=5.3e-11 Score=112.39 Aligned_cols=182 Identities=19% Similarity=0.165 Sum_probs=142.8
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+..+....|+.+.|..++++.....|++...-...|..+...|++++|+++|+..++.+|.+..++.....+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 44555666667777888888888888777778887777777888888888888888888888888888777777777777
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAI 392 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 392 (922)
.+|+..+|++.+.+.++.++.+.++|..++.+|...|++++|.-++++++-++|.++..+..+|.+++-+| ++.-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888877665 566788
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
++|.++++++|.+..+++.+-.+..
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHHH
Confidence 8888888888877766666555443
No 183
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=2.9e-11 Score=115.73 Aligned_cols=178 Identities=22% Similarity=0.173 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 51 MCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
.+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|....+.|++.+|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555556667777777 777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 210 (922)
.|++.+++..+|.+|.+.|++++|...|.+++++.|.++.+..+++..+.-.|+++.|..++..+....+.+..+..+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776777777777
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 002431 211 NVYKALGMPQEAIMCYQRA 229 (922)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~ 229 (922)
.+....|++.+|.++..+-
T Consensus 210 l~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHhhcCChHHHHhhcccc
Confidence 7777777777777665543
No 184
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=3.1e-11 Score=117.57 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM-KAQGL--VQEAYS 156 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 156 (922)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++.+|++...+..+|.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555543 34444 355555
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 157 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
.++++++.+|++..++..+|..+.+.|++++|+..++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555555555555555555555555555555443
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.40 E-value=7.5e-12 Score=128.91 Aligned_cols=256 Identities=16% Similarity=0.096 Sum_probs=155.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
++-.|+|..++...+ ....++. .......+.+++..+|+++..+...... ..|...+...++..+...++.+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence 344566666655444 1111111 1234455566666666665544333221 13444444455554444444555555
Q ss_pred HHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 258 YYKQAIGCD-P-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 258 ~~~~~l~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.++..+... + .+.......|.++...|++++|++.+.+. .+.+.......++.+.++++.|.+.++.+.+.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 554443221 1 23334444556666667777777666542 4566666677777777777777777777766665
Q ss_pred CCchhhhhHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
+...+....+.+....| ++.+|...|+++.+..+.++..++.++.++..+|++++|.+.++++++.+|++++++.+++
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 54444444444444444 5888888888887777778888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhcCCCCHHH
Q 002431 414 SAYKDSGHV-EAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 414 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 442 (922)
.+....|+. +.+.+++.++...+|+++..
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 888888877 66777888888888887654
No 186
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.40 E-value=1.6e-12 Score=142.80 Aligned_cols=303 Identities=13% Similarity=0.124 Sum_probs=183.8
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHh-----ccCceEECCCCC----------H
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQS-----EAEHFVDVSAMS----------S 601 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~ 601 (922)
||.++.+ .-|-.-.+.++++.+.+. ++++.++.++...+..+...+.. ..+....+.+-+ .
T Consensus 1 ~i~~~~g---tr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTG---TRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL 77 (363)
T ss_pred CEEEEEe---cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence 4555553 234444677888888765 79999888886554433332222 122333343321 2
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhh----hc--CCCceEEeccccCCC--CCCCc--cc---EEEecCccCCcCc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIF----AM--QPAPIQVSYMGFPGT--TGASY--ID---YLVTDEFVSPLRY 668 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~----~~--~~apvq~~~~g~~~t--~g~~~--~d---~~~~d~~~~~~~~ 668 (922)
..+.+.+++.++||+ |++|.+...+ +. .--|+....-|.. | .+.+. .. ...+|.++++++.
T Consensus 78 ~~l~~~l~~~~pDvV-----~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~~~~~~~~~r~~~~~~ad~~~~~s~~ 151 (363)
T cd03786 78 IGLEAVLLEEKPDLV-----LVLGDTNETLAAALAAFKLGIPVAHVEAGLR-SFDRGMPDEENRHAIDKLSDLHFAPTEE 151 (363)
T ss_pred HHHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHcCCCEEEEecccc-cCCCCCCchHHHHHHHHHhhhccCCCHH
Confidence 457788888999999 7777653222 21 2247665433321 1 01111 00 1245777777664
Q ss_pred cCCC-------ccceeecCCccccCCCccccccCCCCCC-CCCcCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHH
Q 002431 669 AHIY-------SEKLVHVPHCYFVNDYKQKNMDVLDPNC-QPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCN 735 (922)
Q Consensus 669 ~~~~-------~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~r~~~~l~~~~~~~~~~~~~-----~K~~~~~~~~~~~ 735 (922)
...+ .+++..+++..+. .......... ...|..+|++++.++++++++. .|+.+.+++++.+
T Consensus 152 ~~~~l~~~G~~~~kI~vign~v~d-----~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~ 226 (363)
T cd03786 152 ARRNLLQEGEPPERIFVVGNTMID-----ALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAE 226 (363)
T ss_pred HHHHHHHcCCCcccEEEECchHHH-----HHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHH
Confidence 3222 1223333322110 0000001111 1134578888777777677764 4788999999988
Q ss_pred HHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 736 ILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 736 il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
+... +..+++.|.++. ...+++.+.+.++..++|.|.|.....+...+|..+|+++-++. | .+.||+++|+||
T Consensus 227 l~~~--~~~vi~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~Pv 299 (363)
T cd03786 227 LAEE--DVPVVFPNHPRT-RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPV 299 (363)
T ss_pred HHhc--CCEEEEECCCCh-HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCE
Confidence 7543 566666666554 77888888888874478999998777888888999999997763 3 468999999999
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+....+-. ..+...|..- ++.+|++++++.+.++.+|+..+..++
T Consensus 300 I~~~~~~~~-----~~~~~~g~~~-~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 300 LNLRDRTER-----PETVESGTNV-LVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EeeCCCCcc-----chhhheeeEE-ecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 997643211 1122235544 444578999999999999988777664
No 187
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=1.3e-11 Score=133.04 Aligned_cols=219 Identities=18% Similarity=0.212 Sum_probs=195.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
......++..+...|-...|+..+++. +.|-....+|...|+..+|..+..+-++ .|+++..|..+|++..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 455678899999999999999999884 5788889999999999999999999888 7778888888888887
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
...-+++|.++.+..- ..+...+|......++++++.+.++..++++|-....|+.+|.+..+++++..|.+.|
T Consensus 469 d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7776777777666443 3355666666777899999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
..++.++|++.++|++++.+|.+.|+..+|...++++++.+-++..+|-|........|.|+++.+.+.++..+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887764
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=7.4e-12 Score=125.28 Aligned_cols=270 Identities=26% Similarity=0.308 Sum_probs=143.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSN 106 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 106 (922)
..-|.-+++.|++...+.+|+.+++...++ ..+|..+|++|+..++|++|+++-..=+.+ .-..+.+.-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 344666777788888888888887776654 345677778888888888887765433222 1112344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhhCCC
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLV-------------QEAYSCYLEALRIQPT 167 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~ 167 (922)
+|..+.-.|.+++|+.+..+-+... -....+++++|.+|...|+. +++...++
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~-------- 172 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE-------- 172 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH--------
Confidence 7777777888888877776665442 12345777788887776652 11222222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---C---
Q 002431 168 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP---N--- 235 (922)
Q Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~--- 235 (922)
.|.++|..-+++... ...++-++|+.|+-.|+++.|+..-+.-+.+.. +
T Consensus 173 -------------------~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 173 -------------------NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred -------------------HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222222221111 112444455555555555555544443333211 1
Q ss_pred -hhHHHhHHHHHHHcCChHHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CC
Q 002431 236 -AIAFGNLASTYYERGQADMAILYYKQAIG----CDPR--FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ------PS 302 (922)
Q Consensus 236 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~ 302 (922)
..++.+++.++.-.|+++.|+++|+..+. +... ..+..+.+|+.|.-..++++|+.++++-+.+. ..
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555555555555555555441 1111 22344555555555555666665555544431 11
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
...++..+|..+...|..++|+.+.++.++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2345555666666666666665555554443
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=1e-10 Score=126.32 Aligned_cols=221 Identities=19% Similarity=0.283 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002431 133 LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212 (922)
Q Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 212 (922)
........++..+...|-..+|+..|++. ..|...+.+|...|+..+|..+..+-++ .|+++..|..+|++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34445566777777777777777777763 4566677777777777777777777777 55556666666666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
.....-+++|.++.+... ..+...++......++++++.+.++..++++|-...+|+.+|.+..+.++++.|.+.
T Consensus 467 ~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555444444444444322 334455555556677777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
|...+...|++.++|++++..|.+.++-.+|...++++++.+-.+...|.+...+..+.|.+++|++.+.+.+.+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777665
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.38 E-value=8.6e-12 Score=124.83 Aligned_cols=96 Identities=25% Similarity=0.238 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI----D--PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~ 407 (922)
++.++|.++.-.|+++.|++.|++.+.+ . ...+...+.+|..|.-..++++|+.++.+-+.+. .....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3455555555555555555555554432 1 1224456667777777777777777777666543 22355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+++.||..+...|..++|+.+.++.++.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777777777777777777666654
No 191
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.35 E-value=5.1e-12 Score=140.89 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=124.4
Q ss_pred CCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCCh----hhHHHHHHHHH----HcCCC----
Q 002431 707 YGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAV----AQGVQ---- 768 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~----~~g~~---- 768 (922)
.++.++.+++++++|+. |+++.+++++.+++++.|+ .+|+++|.+. .....+++.++ +.+..
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~ 337 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL 337 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45566778888889874 9999999999999999996 5688786432 11233444333 32211
Q ss_pred -CCceE-EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhH-HHHHHhcCCCCc
Q 002431 769 -PDQII-FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVA-GSLCLATGLGEE 840 (922)
Q Consensus 769 -~~rv~-f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~-~~~~~~~g~~~~ 840 (922)
...|+ |.|.++..+..++|+.+||||.|+..+| |++++|||+||+| ||+. +.+ .+-. |.+.
T Consensus 338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S-------~~~G~~~~---~~~g- 406 (460)
T cd03788 338 DWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILS-------EFAGAAEE---LSGA- 406 (460)
T ss_pred CceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEe-------ccccchhh---cCCC-
Confidence 12354 5577889999999999999999999999 9999999999999 6643 222 1111 3344
Q ss_pred ccc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 841 MIV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 841 ~i~--~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+++ .|++++++++.+++++ ++.++.+.++.++.+. .||...+++++..
T Consensus 407 ~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 407 LLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 443 5899999999999885 4677777778887764 3999999888764
No 192
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.34 E-value=2e-11 Score=134.65 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=126.5
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecC-----ChhhHHHHHHHHHHc------
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRF-----PAAGEMRLRAYAVAQ------ 765 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~-----~~~~~~~l~~~~~~~------ 765 (922)
+|++++ +..++++++|+. |+++.+++++.+++++.|+ .+|+++|. ++. ...+++.+++.
T Consensus 252 lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~-~~~l~~~i~~lv~~in~ 327 (456)
T TIGR02400 252 LRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPE-YQQLRRQVEELVGRING 327 (456)
T ss_pred HHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchH-HHHHHHHHHHHHHHHHh
Confidence 455552 557888999874 9999999999999999996 45776652 232 45666666554
Q ss_pred --CC-C-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhHHHHHHhcC
Q 002431 766 --GV-Q-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 766 --g~-~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~~~~~~~~g 836 (922)
|- + ..-+.|.|.++.++..++|+.+||||.|+..+| |++++|||+||+| ||+......+. .+ +
T Consensus 328 ~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-----~l---~ 399 (456)
T TIGR02400 328 RFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-----EL---N 399 (456)
T ss_pred ccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-----Hh---C
Confidence 11 1 012344557889999999999999999999999 9999999999999 77443221111 11 2
Q ss_pred CCCccc-cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 837 LGEEMI-VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 837 ~~~~~i-~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+..+| ..|++++++++.++.+ +++.++...+++++.+.. ||...+++++....
T Consensus 400 -~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 400 -GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred -CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 23133 2689999999988887 667788888888888643 99999999877543
No 193
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=1.8e-10 Score=132.11 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 256 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
+.-+.......|.+.+++..+|.+....|.+++|...++.+++..|++..+...++.++.+.+++++|...+++++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 33333344567888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (922)
++...++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999998875544443
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.33 E-value=2.8e-07 Score=102.58 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=200.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
.-....+++.+|++...+++++.|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|...|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567899999999999999999999999999999999999999999888887777888889999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH---------HHHHH
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLV---------QEAYS 156 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~ 156 (922)
..+|++++..+|+ .+....+-.+|.+.++|.+-.+.--++.+..|+++..+.....+..+ .... .-|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 88888999999999999887777777777778877655444444333 2222 23455
Q ss_pred HHHHHHhhC-CCcH-HHHHHHHHHHHHcCCHHHHHHHHHH-HHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 157 CYLEALRIQ-PTFA-IAWSNLAGLFMESGDLNRALQYYKE-AVK-LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 157 ~~~~al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~-~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
..++.++.. +-.. .-....-.++..+|++++|.+.+.. ..+ ..+.+..........+...+++.+-.++..+++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 556666554 2211 1122334456678999999999843 233 33444455566778888889999999999999888
Q ss_pred CCCh-hHH----HhHH---------HHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 233 RPNA-IAF----GNLA---------STYYERGQADMAILYYKQAIGCDPRFL-EAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 233 ~p~~-~~~----~~l~---------~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.++. .++ ..+. ..+...+..+...+..++.++.+...+ -++..+-.-+...|+.+++.-.|-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 7773 221 1111 111222334444555555554322222 2333333333455777776655543
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=5.2e-11 Score=122.69 Aligned_cols=254 Identities=15% Similarity=0.052 Sum_probs=171.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 145 MKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
++-.|+|..++...+ ....++ ........+.+++..+|+++..+..... ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 344566666665444 112222 2234455566667777776655443322 12223344555555554444555566
Q ss_pred HHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
..++..+..... .......+.++...|++++|++.+.+. .+.+.......+++..++++.|.+.++.+.+.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 555554433211 344455567777788888888777653 567777888889999999999999999988877
Q ss_pred CCChHHHHhHHHHHHHcC--ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002431 301 PSHPQALTNLGNIYMEWN--MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 378 (922)
.+..-+....+++....| ++.+|..+|+++....+.++..++.++.++..+|++++|.+.++++++.+|.+++++.++
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 666555555566665555 689999999998888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHhhCCCcHH
Q 002431 379 GNTYKEIGRV-TDAIQDYIRAITIRPTMAE 407 (922)
Q Consensus 379 ~~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 407 (922)
+.+...+|+. +.+.+++.+....+|+++.
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999998 6677788888888898764
No 196
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=4.3e-11 Score=110.29 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|++++..+|++......+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667777777777777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877553
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.7e-11 Score=118.09 Aligned_cols=108 Identities=32% Similarity=0.486 Sum_probs=99.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+++.+|.++|.++.|++..+.++.++|....+|.+||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34557778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
++++|++.|+++++++|++.....+|-.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999999999999877666543
No 198
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.27 E-value=1.3e-10 Score=107.02 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=84.2
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
.+++++..+|++....+.+|.++...|++++|+..+++++..+|.++..+..+|.++...|++++|+..++++++.+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (922)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777766544
No 199
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.22 E-value=9.5e-11 Score=124.77 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=148.8
Q ss_pred CCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhC-----CCeEEEEecCC-hh--------hHHHHHHHHHH
Q 002431 701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRV-----PNSALWLLRFP-AA--------GEMRLRAYAVA 764 (922)
Q Consensus 701 ~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~-----p~~~l~~~~~~-~~--------~~~~l~~~~~~ 764 (922)
.+.|...|.....+.|.++|+.. |...-.+.++.+..... +.-++.+.|+. -. -...++..+++
T Consensus 261 ~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~ 340 (495)
T KOG0853|consen 261 LPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEE 340 (495)
T ss_pred cccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHH
Confidence 34677778887778899999764 88999999999887776 44567776632 11 02578899999
Q ss_pred cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCee-eecCCcchhhhHHHHHHhcCCCCccc
Q 002431 765 QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI-TLPLEKMATRVAGSLCLATGLGEEMI 842 (922)
Q Consensus 765 ~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv-~~~~~~~~~r~~~~~~~~~g~~~~~i 842 (922)
.++..+.|.|+...+..+-..++..+.+.+.+...|. |.|++|||++|+||| |..|.+....+. |.++.++
T Consensus 341 ~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~ 413 (495)
T KOG0853|consen 341 YDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLI 413 (495)
T ss_pred hCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceee
Confidence 9997688999998888777888888888888877788 999999999999999 556776666555 7777455
Q ss_pred cCCHH---HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 843 VNSMK---EYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 843 ~~~~~---~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..+.+ .++...+++.+||+.+.+++++.++++. ..|++..|.+++...-..
T Consensus 414 dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~--e~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 414 DPGQEAVAELADALLKLRRDPELWARMGKNGLKRVK--EMFSWQHYSERIASVLGK 467 (495)
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHhHh
Confidence 55655 4999999999999999999999999984 469998888888877653
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=113.49 Aligned_cols=120 Identities=26% Similarity=0.385 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
++.+-.-|.-+++.++|++|+..|.++++++|.++..|...+.+|.++|.++.|++..+.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (922)
.+|++++|++.|++++.++|++......|..+-.+.+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888888887777777665
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.22 E-value=1.9e-10 Score=103.01 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
++.-+..+.+|..+...|++++|.+.|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 002431 415 AYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~ 436 (922)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 202
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.21 E-value=6.1e-11 Score=128.97 Aligned_cols=124 Identities=11% Similarity=0.015 Sum_probs=85.2
Q ss_pred eEEcC-CCC------cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-
Q 002431 772 IIFTD-VAM------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI- 842 (922)
Q Consensus 772 v~f~~-~~~------~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i- 842 (922)
|+|.| +++ ..++..+|+.||+|+.||.|+| |.|.+|||+||+||||.....+..=+- .+...-+-...+|
T Consensus 450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~ 528 (590)
T cd03793 450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIV 528 (590)
T ss_pred EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEe
Confidence 77776 221 2356777899999999999999 999999999999999887765521111 0110000111133
Q ss_pred -------cCCHHHHHHHHHHHhcCHHHHHHHHHHHH-hhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 843 -------VNSMKEYEERAVSLALDRQKLQALTNKLK-SVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 843 -------~~~~~~~~~~~~~l~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..+.+++.+.+.++++. ..++.+.++.+ ++. +..|+++.++....++|..++++
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~--s~~f~W~~~~~~Y~~A~~~Al~~ 590 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERL--SDLLDWRNLGRYYRKARQLALSR 590 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHhhC
Confidence 24678888888888854 55555555543 222 56799999999999999988753
No 203
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.21 E-value=9.7e-07 Score=92.73 Aligned_cols=426 Identities=12% Similarity=0.036 Sum_probs=245.9
Q ss_pred HHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002431 23 NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102 (922)
Q Consensus 23 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (922)
++-++.+|.|..+|+.+..-+..+ .+++..+.|++.+...|..+.+|...+......++|+...++|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 556677888888888887766555 7888888888888888888888888888888888888888888887764332 44
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHH----HHh---CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhC
Q 002431 103 AWSNLAS-AYMRKGRLNEAAQCCRQA----LAL---NPLLVDAHSNLGNLMK---------AQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 103 ~~~~la~-~~~~~g~~~~A~~~~~~~----l~~---~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~ 165 (922)
.|..... +-...|+...+.+..-++ +.. ++.....|...+..+. .+.+.+...+.|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 4443322 222334443333333333 222 2334444544444332 1223444455555555432
Q ss_pred CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CC---
Q 002431 166 PTFA-IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-------RP--- 234 (922)
Q Consensus 166 p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p--- 234 (922)
-.+. ..|... ..+++.+.... ..-.+-.....|..|...+++.... .|
T Consensus 168 m~nlEkLW~DY-------~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 168 MHNLEKLWKDY-------EAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred cccHHHHHHHH-------HHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 2211 111111 11111111000 0000111122233444444433321 11
Q ss_pred -C--------hhHHHhHHHHHHHcCC--------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------
Q 002431 235 -N--------AIAFGNLASTYYERGQ--------ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR------------ 285 (922)
Q Consensus 235 -~--------~~~~~~l~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------ 285 (922)
. ...|.++...-...+- -..-.-.+++++..-+-.++.|+..+..+...++
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 0 1122222222211111 1122334566665566666777776666665555
Q ss_pred --HHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcC---ChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcCCHHHHH
Q 002431 286 --VDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWN---MLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAI 358 (922)
Q Consensus 286 --~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 358 (922)
.+++..++++++... ..+...++.++..-...- ..+.....+++++.....+ .-+|..+...-.+..-.+.|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 677888888877643 233444555554433333 3667777888887765433 445666777777777888999
Q ss_pred HHHHHHHccCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 002431 359 SCYNEVLRIDPLAADGLVNRGN-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL-- 435 (922)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 435 (922)
.+|.++-+..-....++..-|. -|...++..-|.++|+-.++..++.+..-......+...|+-..|..+|++++..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999997765444344444333 3556789999999999999999999988888889999999999999999999987
Q ss_pred CCC-CHHHHHHHHHhhcccCChhhHhHHHHHHHHHHH
Q 002431 436 RPD-FPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 436 ~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 471 (922)
.|+ ...+|..++.--.+.|+.....++-++....++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 333 346677777777777776665555444444333
No 204
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.20 E-value=5.2e-10 Score=113.88 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=85.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHH-hccCCcEE
Q 002431 715 IFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR-RSSLADLF 793 (922)
Q Consensus 715 ~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~-~~~~~dv~ 793 (922)
.+|.+. ..|+.+.+++++.++.++.|+.+++++|.+.. ...........+. .++|.|.|..+..+... +++.+||+
T Consensus 109 ~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLA-PEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeec-ccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 455555 56999999999999999999999999998765 5555554667787 58999999875544444 45569999
Q ss_pred ecCCCCCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 794 l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
+.|+..++ |++++|||+||+|||+.+...+
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 99998888 9999999999999997665533
No 205
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.20 E-value=1.1e-10 Score=128.90 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=109.9
Q ss_pred CCcCCCCCCCCcEEEEec-C-CCC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEc
Q 002431 702 PKRSDYGLPEDKFIFACF-N-QLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFT 775 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~-~-~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~ 775 (922)
..|.++|++++.++++.+ + |.. ++++.+++++..+.++.|+.+++++|.++..++.+++...+. |+. |.+.
T Consensus 175 ~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~ 251 (380)
T PRK00025 175 AARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLL 251 (380)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEE
Confidence 367789998766554333 3 322 457888999999888889999988876444367788877777 662 5553
Q ss_pred CCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH---hcCC----------CCccc
Q 002431 776 DVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL---ATGL----------GEEMI 842 (922)
Q Consensus 776 ~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~---~~g~----------~~~~i 842 (922)
. .+...+|+.+|+++.++ |++++|||++|+|||+.+....-...-+..+. ..|+ ++ ++
T Consensus 252 ~----~~~~~~~~~aDl~v~~s----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 322 (380)
T PRK00025 252 D----GQKREAMAAADAALAAS----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPE-LL 322 (380)
T ss_pred c----ccHHHHHHhCCEEEECc----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchh-hc
Confidence 3 35677899999999864 67777999999999977443222211111111 1122 33 33
Q ss_pred c--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002431 843 V--NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (922)
Q Consensus 843 ~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~ 873 (922)
. .|++++++.+.++.+|++.++.+++++++.
T Consensus 323 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 355 (380)
T PRK00025 323 QEEATPEKLARALLPLLADGARRQALLEGFTEL 355 (380)
T ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 368899999999999999999999987443
No 206
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.20 E-value=1.9e-10 Score=113.04 Aligned_cols=273 Identities=15% Similarity=0.211 Sum_probs=180.9
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCC-CC---------------CcccEE----------
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTT-GA---------------SYIDYL---------- 657 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~-g~---------------~~~d~~---------- 657 (922)
-+.|-+.-+||.||..|+.- ..++|. ++-.|| ++|..||.-+ .+ ..+-|+
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 34555678999999999873 467777 444564 4555677322 11 011111
Q ss_pred --EecCccCCcCccCCCccceeecCCccccCCCccccccCCCCCCCCCcCCCCC-CCCcEEEEecC--CCCCCCHHHHHH
Q 002431 658 --VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGL-PEDKFIFACFN--QLYKMDPEIFNT 732 (922)
Q Consensus 658 --~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~~~~~~~--~~~K~~~~~~~~ 732 (922)
-+|.+++.+.......-.+|..-.+.+.+.|- ....+.+..+- .+..+...+++ |+.|+|+ .++.
T Consensus 220 G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC---------~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql 289 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPC---------STEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQL 289 (465)
T ss_pred cccceEEEecchhhHHHHHHHhhccceeEEcCCC---------CHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHH
Confidence 23445554444333334555544444433211 11123333333 12334555555 7889999 8888
Q ss_pred HHHHHhhCC------CeEEEEecCC--hhhH---HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002431 733 WCNILRRVP------NSALWLLRFP--AAGE---MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801 (922)
Q Consensus 733 ~~~il~~~p------~~~l~~~~~~--~~~~---~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g 801 (922)
++--+.+.| +.+|+|+|+- ..+. ..|+.+++++.|+ +.|.|.--+|+++...+++.+-+-+.+-.-+.
T Consensus 290 ~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH 368 (465)
T KOG1387|consen 290 FALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLVELLGKATIGVHTMWNEH 368 (465)
T ss_pred HHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHHHHhccceeehhhhhhhh
Confidence 887666554 5799999853 2223 3678899999995 77999999999999999999999999976666
Q ss_pred -hhHHHHHHHcCC-CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCC
Q 002431 802 -HTTGTDILWAGL-PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCP 878 (922)
Q Consensus 802 -~~t~~eal~~g~-Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~ 878 (922)
|.+++|+||+|+ ||+--.|.+.-.-|.. -.|-+-.+.+.+.+||++..++... +++.|..+|...|.+...
T Consensus 369 FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~----~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R-- 442 (465)
T KOG1387|consen 369 FGISVVEYMAAGLIPIVHNSGGPLLDIVTP----WDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLAR-- 442 (465)
T ss_pred cchhHHHHHhcCceEEEeCCCCCceeeeec----cCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--
Confidence 999999999997 5554444333222221 1133333788999999999988876 788899999999998654
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 002431 879 LFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 879 ~~~~~~~~~~~e~~y~~~~~ 898 (922)
|+...|-+.++..+..+++
T Consensus 443 -FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 -FGELKFDKDWENPICKLLE 461 (465)
T ss_pred -hhHHHHHHhHhHHHHHhhc
Confidence 9999999998887776654
No 207
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=7.2e-09 Score=107.90 Aligned_cols=153 Identities=23% Similarity=0.166 Sum_probs=124.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|........+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..++... .+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888888888888888888888888888876655443 345566677888888
Q ss_pred HHHHHHHhhC
Q 002431 224 MCYQRAVQTR 233 (922)
Q Consensus 224 ~~~~~~~~~~ 233 (922)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 8877777654
No 208
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.17 E-value=2.4e-10 Score=134.32 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=131.1
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeE----EEEec-----CChhhHHHHHHHHHHcC--CCCCc-------
Q 002431 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA----LWLLR-----FPAAGEMRLRAYAVAQG--VQPDQ------- 771 (922)
Q Consensus 712 ~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~-----~~~~~~~~l~~~~~~~g--~~~~r------- 771 (922)
+..++.++.|+ .|+.+..+++|.++++..|+.+ |++++ +++. .+.+++.+.+++ |. ++
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~-y~~l~~~v~~l~g~In-~~~g~~~~~ 355 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPE-YQKLKSQVHELVGRIN-GRFGSVSSV 355 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHH-HHHHHHHHHHHHHHhh-cccccCCCc
Confidence 45677788886 4999999999999999999863 33333 2222 457777777774 42 22
Q ss_pred -eEEc-CCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCC----eeeecCCcchhhhHHHHHHhcCCCCccc-c
Q 002431 772 -IIFT-DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMI-V 843 (922)
Q Consensus 772 -v~f~-~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~P----vv~~~~~~~~~r~~~~~~~~~g~~~~~i-~ 843 (922)
|++. +.++..+..++|+.+||||.|+.++| |++++|||+||+| +|. |.+++.. ..+|-...+| .
T Consensus 356 pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~-~~l~~~allVnP 427 (797)
T PLN03063 356 PIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAG-QSLGAGALLVNP 427 (797)
T ss_pred eeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCch-hhhcCCeEEECC
Confidence 2333 36788999999999999999999999 9999999999998 663 3333110 0123333133 2
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
.|++++++++.++++ +++.++...+.+++.+.. +|+..+++.+.+.++++++...
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~~~ 483 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVEAE 483 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhhhh
Confidence 699999999999988 788888877778887654 8999999999999999887543
No 209
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.17 E-value=5.6e-06 Score=87.23 Aligned_cols=403 Identities=13% Similarity=0.084 Sum_probs=242.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN-MANAWKEKGDIDLAI 87 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~ 87 (922)
..+...++++.+.+++.+...|..+.+|.......+..++|+...++|.+++..--+ .+.|.. +-.+-...|+...+.
T Consensus 29 e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHH
Confidence 344559999999999999999999999999999999999999999999999865332 344432 233334455555544
Q ss_pred HH----HHHHHhc---CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH-------
Q 002431 88 RY----YLVAIEL---RPNFADAWSNLASAYM---------RKGRLNEAAQCCRQALALNPLLVD-AHSNLGN------- 143 (922)
Q Consensus 88 ~~----~~~al~~---~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~------- 143 (922)
.. |+-+++. ++.....|...+..+. .+.+.+...+.|++++..--.+.+ .|...-.
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 44 4444433 4555566766665543 233556667788888764322222 1111110
Q ss_pred ------HHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 002431 144 ------LMKAQGLVQEAYSCYLEALRI-------QPTFAIAWSNLAGLFMESGDL--NRALQYYKEAVKLKPTFPDAYLN 208 (922)
Q Consensus 144 ------~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~ 208 (922)
+.-....|..|...+++.... +|.-+ ..|-. -++.+. |.+
T Consensus 188 ~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp-----------~~~T~~e~~qv~~--------------W~n 242 (656)
T KOG1914|consen 188 ITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP-----------PKGTKDEIQQVEL--------------WKN 242 (656)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC-----------CCCChHHHHHHHH--------------HHH
Confidence 111122233344433333221 00000 00000 011111 111
Q ss_pred HHHHHHHcCCh--------HHHHHHHHHHHhhCCC-hhHHHhHHH-------HHHHcCC-------hHHHHHHHHHHHhc
Q 002431 209 LGNVYKALGMP--------QEAIMCYQRAVQTRPN-AIAFGNLAS-------TYYERGQ-------ADMAILYYKQAIGC 265 (922)
Q Consensus 209 l~~~~~~~g~~--------~~A~~~~~~~~~~~p~-~~~~~~l~~-------~~~~~g~-------~~~A~~~~~~~l~~ 265 (922)
+...-...+-- ....-.+++++..-+- ++.|+..+. .+...|+ .+++..+|++++..
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 11111111000 0111223333322221 333333222 2333332 45666777776632
Q ss_pred -CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCh-HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 266 -DPRFLEAYNNLGNALKDVG---RVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 266 -~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
...+...++.++..-...- +.+.....+++++.....++ -++..+...-.+..-.+.|..+|.++-+.......+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2223334555544333322 36777788888887654443 366667777777777889999999988765444344
Q ss_pred hhhHHH-HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCC-cHHHHHHHHHHH
Q 002431 341 FNNLAV-IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--RPT-MAEAHANLASAY 416 (922)
Q Consensus 341 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~ 416 (922)
+..-|. -|...++.+-|...|+-.++..++.+..-......+..+++-..|...|++++.. .++ ..++|..+...-
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 433333 2556789999999999999999999999999999999999999999999999987 333 357888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 002431 417 KDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p 437 (922)
..-|+...++++-++.....|
T Consensus 483 S~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcc
Confidence 899999999999888888777
No 210
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.17 E-value=4.2e-11 Score=110.38 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=88.1
Q ss_pred cEEEEecCCCC--CCCHHHHH-HHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 713 KFIFACFNQLY--KMDPEIFN-TWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 713 ~~~~~~~~~~~--K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
.++||.+++.. |....+++ +|.++.++.|+..|.|+|.++. ++++. . .++|+|.|.+ +++..+++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~-----~-~~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL-----R-RPNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH-----H-HCTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh-----c-CCCEEEcCCH--HHHHHHHHh
Confidence 36788888765 89999999 9999999999999999998654 24433 2 4699999998 589999999
Q ss_pred CcEEecCCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 790 ADLFLDTPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 790 ~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
+||++.|+. .++ +++++|+|++|+|||+... .+. .+....|..- ++.+|++++++++.+|..|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-----~~~~~~~~~~-~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAE-----GIVEEDGCGV-LVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCH-----CHS---SEEE-E-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chh-----hheeecCCeE-EECCCHHHHHHHHHHHhcC
Confidence 999999975 445 8999999999999998665 111 1222224444 6678999999999999875
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.17 E-value=3e-06 Score=94.62 Aligned_cols=432 Identities=13% Similarity=0.061 Sum_probs=277.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
....+++.+|+....+.++..|+...+....|..+.+.|+.++|..+++..-...+++..++..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35668899999999999999999999999999999999999999988888877888888899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCCH---------HHHHHHH
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SGDL---------NRALQYY 192 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~~~ 192 (922)
+|+++...+|+ .+....+-.+|.+.+.|.+-.+.--++.+..|+++..+-....++.+ .... .-|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 88888888899999988887777777777888887654444444433 2222 2355566
Q ss_pred HHHHhcC-CCCHH-HHHHHHHHHHHcCChHHHHHHHH-HHHhhCCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 193 KEAVKLK-PTFPD-AYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 193 ~~~l~~~-p~~~~-~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
++.++.. +-... -....-.++..+|++++|.+.+. ...+..+. ...-......+...+++.+-.++..+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666655 22211 12233356677899999999994 44444444 33334667778888999999999999998888
Q ss_pred CcHHHHHH-HHHHH------------HHcCCHHHHHHHHHHHHhhCCCChH-HHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 268 RFLEAYNN-LGNAL------------KDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 268 ~~~~~~~~-l~~~~------------~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
++..++.. .-.++ ...+..+...+..++.+......+. ++..+-.-+..-|+.+++...|-+-.-.
T Consensus 258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~ 337 (932)
T KOG2053|consen 258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD 337 (932)
T ss_pred cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence 87322222 11111 1112233333333333332122222 3333333334557777766555332222
Q ss_pred CC------------------------------CCc---hh---hhhHHHHHHHcCCH-----HHHHHHHHHHH-------
Q 002431 334 TT------------------------------GLS---AP---FNNLAVIYKQQGNY-----ADAISCYNEVL------- 365 (922)
Q Consensus 334 ~~------------------------------~~~---~~---~~~la~~~~~~g~~-----~~A~~~~~~al------- 365 (922)
.| ... .. +.....+....|.+ +.-..++++..
T Consensus 338 kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 338 KPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred CcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 11 100 00 11111111222321 12222222221
Q ss_pred cc----CCC---CHHHHHH-----HHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 366 RI----DPL---AADGLVN-----RGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 366 ~~----~p~---~~~~~~~-----l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+. .|. ..+.+.. +...+.+.++ .-+|+-.++..+..+|.+......+..+|.-.|-+..|.+.|+
T Consensus 418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 11 111 1222222 3344555544 5678888999999999999999999999999999999999998
Q ss_pred HHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhc
Q 002431 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN 475 (922)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 475 (922)
.+--.+-.....-+.+...+...|.|..+...+.....++.....
T Consensus 498 tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~k 542 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLK 542 (932)
T ss_pred hcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhh
Confidence 765444444444455555566667888887777777766655443
No 212
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=8.8e-09 Score=107.28 Aligned_cols=153 Identities=26% Similarity=0.241 Sum_probs=102.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
|....+++..+..+...|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++...|.....+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45555666666666666777777777777666667766666666777777777777777777777666666666666677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
.|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|.. ..+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 77777777777777766666666666777777766666666555432 3445556666666666
Q ss_pred HHHHHHHhcC
Q 002431 427 KSYKQALLLR 436 (922)
Q Consensus 427 ~~~~~al~~~ 436 (922)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 213
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.15 E-value=3.3e-10 Score=133.96 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=127.7
Q ss_pred CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCCh----hhHHHHHHHHHHc--------CC-CC-C
Q 002431 711 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAVAQ--------GV-QP-D 770 (922)
Q Consensus 711 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~-~ 770 (922)
++..++++++|+. |+.+..+++|.++++..|+ .+|+++|.|. .....+++.+.+. |. +. .
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 3557888999874 9999999999999999996 6788886331 1134555555443 21 11 1
Q ss_pred ceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc-----CCCeeeecCCcchhhhHHH-HHHhcCCCCcccc
Q 002431 771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLATGLGEEMIV 843 (922)
Q Consensus 771 rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~-----g~Pvv~~~~~~~~~r~~~~-~~~~~g~~~~~i~ 843 (922)
.+.|.|.++.++..++|+.+||||.|+..+| |++++|||+| |+|||+-. .|++ .+. ...+|.
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~-------~G~~~~l~----~~llv~ 411 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM-------AGAAAELA----EALLVN 411 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecc-------cchhHHhC----cCeEEC
Confidence 3567788999999999999999999999999 9999999999 45666322 2211 110 121332
Q ss_pred -CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 844 -NSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 844 -~~~~~~~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
.|++++++++.++++++ +.+....+++++.+. .||+..+++++.+.|+++|....
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 58999999999988753 444444456777653 49999999999999999997653
No 214
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.14 E-value=4e-10 Score=122.97 Aligned_cols=257 Identities=14% Similarity=0.108 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCC-chhhhhcC-CCceEEe----ccccCCCCCCCcccEEEecCccCCcCccC-CCcc
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGA-RNEIFAMQ-PAPIQVS----YMGFPGTTGASYIDYLVTDEFVSPLRYAH-IYSE 674 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~-~~~~~~~~-~apvq~~----~~g~~~t~g~~~~d~~~~d~~~~~~~~~~-~~~e 674 (922)
.++.+.|++.++|++|-.+| ...+ ++...+++ .-|+..- -|.++.. ....-...+|.+++....+. .|.+
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~--~~r~l~~~~d~v~~~~~~e~~~~~~ 155 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKW--RAKKIEKATDFLLAILPFEKAFYQK 155 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcc--hHHHHHHHHhHhhccCCCcHHHHHh
Confidence 46788899999999987775 3222 22113322 2466542 1233311 11122224566665543322 2221
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecC--CC---CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN--QL---YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
. ..+..++ .++.........+.....|+.+|++++.++++.+. |. .|+++.++++...+.+..|+.++++.+
T Consensus 156 ~--g~~~~~v-GnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 156 K--NVPCRFV-GHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred c--CCCEEEE-CCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 0 1121111 11110000000011223577899988776665442 43 378999999999998889999886654
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHH
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 829 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~ 829 (922)
.+....+.+++...+.|. ..+|.+.+. +...+|+.+|+++.++ |++++|+|++|+|+|.....+.-+..-+
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 233 VNFKRRLQFEQIKAEYGP-DLQLHLIDG----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CCchhHHHHHHHHHHhCC-CCcEEEECc----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 333336667777777777 467776653 2234689999999888 6677799999999997744333333332
Q ss_pred HHH-H--hcCC----------CCcccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHhhc
Q 002431 830 SLC-L--ATGL----------GEEMIV--NSMKEYEERAVSLALDR----QKLQALTNKLKSVR 874 (922)
Q Consensus 830 ~~~-~--~~g~----------~~~~i~--~~~~~~~~~~~~l~~d~----~~~~~~~~~~~~~~ 874 (922)
..+ + ..++ || ++- -+++...+.+.+|..|+ +.++++++.+.+..
T Consensus 304 ~~~~~~~~~~~~nil~~~~~~pe-l~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 304 RRLVKTDYISLPNILANRLLVPE-LLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHcCCeeeccHHhcCCccchh-hcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 221 1 1222 33 442 36889999999999999 99999998887654
No 215
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.12 E-value=2.1e-09 Score=96.44 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=76.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
++..+..+.+|..++..|++++|.+.|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..+..+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 002431 110 AYMRKGRLNEAAQCCRQALALN 131 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~ 131 (922)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777776654
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.5e-06 Score=93.49 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhcCCCCH------HHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFP------EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
+..+.+.-.+.+++. |..+ ..+..++..+....+|..|.+.+.++..
T Consensus 1306 D~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred hHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 555566666666554 3322 3455667777777888888877776654
No 217
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.1e-05 Score=81.79 Aligned_cols=404 Identities=17% Similarity=0.097 Sum_probs=224.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCc----H
Q 002431 35 NLLLLGAIYYQLH--DYDMCIARNEEALRLEPRF---AECYGNMANAWK-EKGDIDLAIRYYLVAIELR---PNF----A 101 (922)
Q Consensus 35 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~ 101 (922)
++..+|..+...| +...++++++......|.+ +.+...+|..++ ...+++.|...++++..+. |+. .
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 4445555555555 5566666666655555443 344455554433 3455666666666665442 221 2
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC---cHHHH
Q 002431 102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLV----DAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPT---FAIAW 172 (922)
Q Consensus 102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~ 172 (922)
+++..++.+|.... .+..|...+.++++.....+ ...+.++.+..-..++..|.+.+.--... ++. .....
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence 34455566665555 55666666666666554333 23445566666666666666553211111 010 01111
Q ss_pred HHH--HHHHHHcCC---HHHHHHHHHHHHhcCCCCHH-------HHHHH-HHHHHHcCChHHHHHHHHHHHhh----C--
Q 002431 173 SNL--AGLFMESGD---LNRALQYYKEAVKLKPTFPD-------AYLNL-GNVYKALGMPQEAIMCYQRAVQT----R-- 233 (922)
Q Consensus 173 ~~l--a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----~-- 233 (922)
+.+ +.++....+ ...+.....++.+....++. .|..+ ...|...|+...+...++++... .
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 111 112222222 23333333444333222221 11122 22233456655555555443321 0
Q ss_pred -----------CChh--HHHhH----HHHH-------HHcCChHHHHHHHHHHHhc------CCCcHH--------HHHH
Q 002431 234 -----------PNAI--AFGNL----ASTY-------YERGQADMAILYYKQAIGC------DPRFLE--------AYNN 275 (922)
Q Consensus 234 -----------p~~~--~~~~l----~~~~-------~~~g~~~~A~~~~~~~l~~------~p~~~~--------~~~~ 275 (922)
|... .|.-. +.+| ...|-+++|.++-++++.. .+.... .+-.
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 1111 11000 1111 2345677777777777632 121111 2334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CC-------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC-C--chhhh
Q 002431 276 LGNALKDVGRVDEAIQCYNQCLSLQ---PS-------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-L--SAPFN 342 (922)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~ 342 (922)
++.+-.-.|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.... + ...-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4555666799999999988887753 43 2446777888888889999999999999877543 2 23355
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAH 409 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 409 (922)
++|..|.+.|+-+.-.+.++..-..+... ..+++..|...+.++++.||...+.+.++.... ..-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 78999999888766555555443222111 336777888889999999999999999987521 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
..|+.+....|+..++.+...-++++...
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 66888889999999999999888887543
No 218
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.3e-09 Score=113.92 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=54.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..|..++..|+|++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
++|+..|+++++++|++..+...++.+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555555544444444333
No 219
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.04 E-value=8.6e-08 Score=110.69 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 002431 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF----PDAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
-.+..+-|++.+..+|++...|..+.....+.++.++|.+..++++.. ++.. ..+|..+.++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334566778888888999999999988899999999999999998873 3332 23566666666666777788888
Q ss_pred HHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C
Q 002431 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--H 303 (922)
Q Consensus 226 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~ 303 (922)
|+++.+.......+..|..+|...+++++|.++++.+++...+....|..++..++...+-+.|..++.++++.-|. +
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 88888877667788888889999999999999999988877777788888899888888888888999998888777 6
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (922)
.+.....+.+-++.|+.+.+..+|+..+...|.-...|+-++..-.++|+.+.+..+|++++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 67777888888888888888888888888888888888888888888888888888888887654
No 220
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.02 E-value=5.5e-08 Score=97.92 Aligned_cols=182 Identities=14% Similarity=0.031 Sum_probs=135.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC---YGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAW 104 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 104 (922)
.++..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778889999999999999999999999999987544 4889999999999999999999999998775 5578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 105 SNLASAYMRKG---------------R---LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 105 ~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
+.+|.++...+ + ..+|+..|++.++..|+..-+- +|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHH---
Confidence 88887754443 1 3578889999999999764321 11111111100
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRA 229 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (922)
.-..--...+..|.+.|.+..|+.-++.+++..|+. .+++..++..|...|..++|.+....+
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011222467788888888888888888888877765 457888888888899888888776654
No 221
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.99 E-value=2.2e-09 Score=117.57 Aligned_cols=160 Identities=10% Similarity=0.037 Sum_probs=105.5
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+++|.++++. |...+++ .++.+..|+..|+|+|.++. ..... .... .++|.|+|.+++++...+++.+
T Consensus 204 ~~~~i~y~G~l~~~~d~~ll---~~la~~~p~~~~vliG~~~~-~~~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 204 PRPVIGYYGAIAEWLDLELL---EALAKARPDWSFVLIGPVDV-SIDPS---ALLR--LPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred CCCEEEEEeccccccCHHHH---HHHHHHCCCCEEEEECCCcC-ccChh---Hhcc--CCCEEEeCCCCHHHHHHHHHhC
Confidence 456777777665 5544444 45666789999999998722 11111 1112 3789999999999999999999
Q ss_pred cEEecCCCCC-----C-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHh-cCHHHH
Q 002431 791 DLFLDTPLCN-----A-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA-LDRQKL 863 (922)
Q Consensus 791 dv~l~~~~~~-----g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~-~d~~~~ 863 (922)
||++.|+..+ + ++.++|+|+||+|||+.+.+ .+....+ ...++..|.+++++++.+.+ .+...+
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~--------~~~~~~~-~~~~~~~d~~~~~~ai~~~l~~~~~~~ 345 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP--------EVRRYED-EVVLIADDPEEFVAAIEKALLEDGPAR 345 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH--------HHHhhcC-cEEEeCCCHHHHHHHHHHHHhcCCchH
Confidence 9999997532 3 67899999999999975432 1222222 22144568999999999954 333322
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 864 QALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
...+. .. ...+|++..+++++...++
T Consensus 346 ~~~~~---~~---~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 346 ERRRL---RL---AAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHH---HH---HHHCCHHHHHHHHHHHHHh
Confidence 22111 11 2238999999999865543
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=4.9e-08 Score=96.07 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=114.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++..|..+++.|+|.+|+..|+++....|.+ ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4678888999999999999999998887754 6778888999999999999999999999888875 467888888
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 76 AWKEKG-----------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 76 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
+++... ...+|+..|+..++..|++..+- +|...+..+.. ....--+..|..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 766542 23477778888888777753221 11111111100 011223456778
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHH
Q 002431 145 MKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 188 (922)
|.+.|.+..|+..++.+++..|+.. .++..++..|.+.|..+.|
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888888888888888877764 4667777888888877744
No 223
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.9e-06 Score=92.99 Aligned_cols=223 Identities=18% Similarity=0.205 Sum_probs=119.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH--------Hh---cCCCcHHHHHHHHHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA--------LR---LEPRFAECYGNMANAWKE 79 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------l~---~~p~~~~~~~~la~~~~~ 79 (922)
..|+.+.|.+..+-+- +..+|-.++..+.+..+.+-|.-++-.+ ++ .+++ +.-...+....+
T Consensus 740 tiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHH
Confidence 3467777776665542 3456777777777666666555443222 11 1222 233344555667
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
.|..++|..+|.+.-. +-.+-..|...|.+++|.++.+.--+++ .-..|+..+..+...++.+.|+++|+
T Consensus 813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 7777888888877543 3344556667777777776655432222 23467777777777777777777776
Q ss_pred HHH----------hhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 002431 160 EAL----------RIQPT----------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219 (922)
Q Consensus 160 ~al----------~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 219 (922)
++- ..+|. +...|.-.|..+...|+.+.|+.+|..+. -|+.+.++.+-+|+.
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKT 954 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCc
Confidence 542 11221 12233334444444455555555554432 233344444444554
Q ss_pred HHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 220 QEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 220 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
++|-.+.++ ..+..+.+.++..|...|++.+|+..|.++
T Consensus 955 ~kAa~iA~e----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 955 DKAARIAEE----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHh----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444443332 122344455555555555555555555544
No 224
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.98 E-value=1.1e-08 Score=109.86 Aligned_cols=111 Identities=22% Similarity=0.218 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++++|+..|+++++++|++..+...++.+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777766666555543
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=1.1e-07 Score=94.46 Aligned_cols=297 Identities=16% Similarity=0.209 Sum_probs=179.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---hhHHHhHHHHHH
Q 002431 178 LFMESGDLNRALQYYKEAVKLKPTFP---DAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN---AIAFGNLASTYY 247 (922)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~l~~~~~ 247 (922)
-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.+++++..--..+.. +.. .+++.+++..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444322211 12333445555666666555443332221 111 456667777777
Q ss_pred HcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHHH
Q 002431 248 ERGQADMAILYYKQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYME 316 (922)
Q Consensus 248 ~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 316 (922)
+..++.+++.+-+..++.... .......++.++..++.++++++.|+++++...++ -.++..++.++..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 777777777666666543211 12455567777777777888888888877763322 1366777888888
Q ss_pred cCChhHHHHHHHHHHhcCCC----C------chhhhhHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHH
Q 002431 317 WNMLPAAASYYKATLAVTTG----L------SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVNRGN 380 (922)
Q Consensus 317 ~~~~~~A~~~~~~a~~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 380 (922)
..++++|.-+..++.++... + ..+.+.++..+..+|..-.|.++.+++.++. +.....+..+|.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 88888888777777665322 1 2235677888888888888888888887652 233556777888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHhcCCC----CH--HHH
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPT------MAEAHANLASAYKDSGHVEA-----AIKSYKQALLLRPD----FP--EAT 443 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~----~~--~~~ 443 (922)
+|...|+.+.|..-|+.+...... ..+++...++++....-..+ |++.-++++++... .. ...
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~h 334 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLH 334 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888888888888888888765321 24455666666655443333 77776666665322 11 234
Q ss_pred HHHHHhhcccCChhhHhHHHHHHHHHHHHHh
Q 002431 444 CNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (922)
Q Consensus 444 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 474 (922)
..+...|...|.-++-...+..+.+..+++.
T Consensus 335 crla~iYrs~gl~d~~~~h~~ra~~~~~e~~ 365 (518)
T KOG1941|consen 335 CRLASIYRSKGLQDELRAHVVRAHECVEETE 365 (518)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 4566667677766666666666666666553
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=5.4e-07 Score=86.47 Aligned_cols=254 Identities=17% Similarity=0.105 Sum_probs=140.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
++-.|+|.+++..-++..... ........+.+.|..+|++...+....... .|...+...++......++.++-+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 334455555555444433322 334444455555555555443332222111 12223333333333333333333333
Q ss_pred HHHHH-hc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002431 259 YKQAI-GC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (922)
Q Consensus 259 ~~~~l-~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 336 (922)
+.+.+ .. ...+......-+.++...+++++|.+..... .+.++...-..++.+..+.+-|.+.++++.+.+.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 32222 11 1122223334455566666666666655542 23344444455566666666666666666655433
Q ss_pred CchhhhhHHHHHH----HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 337 LSAPFNNLAVIYK----QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 337 ~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
.+...||..+. ..+++.+|.-+|+++-+..|..+..+...+.+...+|++++|...++.++..++++++++.++
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 22233333333 234677888888888887777788888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHhcCCCCHHH
Q 002431 413 ASAYKDSGHVEAA-IKSYKQALLLRPDFPEA 442 (922)
Q Consensus 413 a~~~~~~g~~~~A-~~~~~~al~~~p~~~~~ 442 (922)
..+-...|...++ .+...+.....|+++.+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 8888777766554 44556666667776543
No 227
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=2.4e-08 Score=109.57 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=132.9
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.+++. .|+.+.+++++..+....|+..++++|.++.....+...+.+.+. .+.|.|.|.++..+....++.+|
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCC
Confidence 455556653 589999999999998888888899999876523556667778887 58899999988777777888899
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
+++.|+.++| |.+++|||++|+|||+...+....-+. . |..+.++.. +.++++.++..+..+++.++.+...
T Consensus 279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~-----~-~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 352 (381)
T COG0438 279 VFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVE-----D-GETGLLVPPGDVEELADALEQLLEDPELREELGEA 352 (381)
T ss_pred EEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhc-----C-CCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999988777 999999999999999665543333332 1 111312222 5899999999999998777777764
Q ss_pred HHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 870 LKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.++.. ...|+++.++..+.+.|.....
T Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 353 ARERV--EEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHH--HHhcCHHHHHHHHHHHHHHHHh
Confidence 54544 2469999999999888877653
No 228
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.94 E-value=1.7e-07 Score=94.49 Aligned_cols=178 Identities=15% Similarity=0.039 Sum_probs=109.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAH 138 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~ 138 (922)
.++..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778888888999999999999999999988886554 47888999999999999999999999887654 466
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 139 SNLGNLMKAQGL------------------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 139 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
+.+|.++...+. ..+|+..|++.++..|++..+ .+|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 677766543321 234555555555555554321 111111111100
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
.-..--+..+..|.+.|.+..|+.-++.+++..|+ .+++..+...|...|..++|....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 01112234555566666666666666666665554 445555555555555555554443
No 229
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=5.9e-07 Score=104.01 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=111.5
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPR----FAECYGNMANAWKEKGDIDLAIRYYLVAI 94 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al 94 (922)
+-|++.+..+|++...|........+.++.++|.+.+++++.. ++. ....|..+-+....-|.-+.-.+.|+++.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555532 221 12233333333333444444555555555
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHH
Q 002431 95 ELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAW 172 (922)
Q Consensus 95 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 172 (922)
+.... ...+..|..+|.+.+++++|.++++.+++...+....|..++..+.++++-++|..++.++++.-|. +....
T Consensus 1525 qycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred Hhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 43221 3345555555555555555555555555555555555555555555555555555555555555554 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
...|.+-++.|+.+.+..+|+..+..+|.-.+.|.-+++.-.+.|+.+.+..+|++++..
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555555555544
No 230
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.8e-08 Score=89.14 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=85.7
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANL 412 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 412 (922)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777888888888888888888888877765 5678888888888888888888888888887764 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
|.++.+.|++++|...++++++..|+++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888876544
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.7e-08 Score=97.48 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 002431 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYI 396 (922)
Q Consensus 320 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 396 (922)
.+..+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4445556677778889999999999999999999999999999999999999999999998887764 4678899999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+++..+|++..+.+.||..++..|++.+|...++.+++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887653
No 232
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=3.4e-08 Score=88.57 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=50.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
+.+|..+.+.|++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445555555555555555555555544433 3344555555555555555555555555544442 3445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 77 WKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
+...|++++|+..++++++..|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 5555555555555555555555443
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=2e-07 Score=91.70 Aligned_cols=176 Identities=23% Similarity=0.216 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 105 (922)
++..++..|..++..|+|.+|++.|++++...|.. ..+.+.+|.++++.|++++|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988864 6789999999999999999999999999998875 45788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 106 NLASAYMRKG-----------RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 106 ~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
.+|.+++... ...+|+..|+..++..|++..+- +|...+..+-+ .-..--..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 8888766542 34477788888888877754321 11111111100 01122356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHH
Q 002431 175 LAGLFMESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 224 (922)
+|..|.+.|.+..|+..++.+++..|+... ++..++..+.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 899999999999999999999999998754 78899999999999885543
No 234
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=8.6e-08 Score=88.93 Aligned_cols=116 Identities=28% Similarity=0.201 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHH
Q 002431 45 QLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 45 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 118 (922)
..++...+...++++++.+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4555666666666666666655 3455556666666666666666666666655432 235556666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
+|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666442 223334455666666666666666666666655
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.6e-08 Score=95.74 Aligned_cols=121 Identities=28% Similarity=0.248 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCR 125 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 125 (922)
.+..+.-++.-+..+|+|++.|..||.+|...|++..|...|.+++++.|++++.+..++.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555556666677777777777777777777777777777777777777777777777777766543 3556777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (922)
++++.+|.+..+...++..++.+|++.+|...++.+++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777777777777777777777777777777777777765543
No 236
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.87 E-value=1.5e-08 Score=113.20 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=127.7
Q ss_pred EEEEecCC-CCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--hHHHHHHHHHHcCCC----------------------
Q 002431 714 FIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQ---------------------- 768 (922)
Q Consensus 714 ~~~~~~~~-~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~---------------------- 768 (922)
+++...-| +.|..+.+++++.+++.++|++.|.+.|.+.. ....+++.+++.++.
T Consensus 322 ~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (519)
T TIGR03713 322 EIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQT 401 (519)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccc
Confidence 44444224 56999999999999999999999999887642 135676776777663
Q ss_pred ------CCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc
Q 002431 769 ------PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841 (922)
Q Consensus 769 ------~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~ 841 (922)
.++|.|.|..+..+....|..+.+++|++..+| + |.+||+..|+|+| --|+ +-+-.-|.++ +
T Consensus 402 ~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI-nyg~--------~~~V~d~~NG-~ 470 (519)
T TIGR03713 402 DEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI-NKVE--------TDYVEHNKNG-Y 470 (519)
T ss_pred hhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee-ecCC--------ceeeEcCCCc-E
Confidence 179999998777789999999999999999999 6 9999999999999 2222 1111127778 7
Q ss_pred ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 842 i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+..|.+++.+++..++.++...+++....-+.+. .|+.+....++++
T Consensus 471 li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~---~yS~~~i~~kW~~ 517 (519)
T TIGR03713 471 IIDDISELLKALDYYLDNLKNWNYSLAYSIKLID---DYSSENIIERLNE 517 (519)
T ss_pred EeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHh
Confidence 7799999999999999999988888887777653 3877666655544
No 237
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.86 E-value=3.5e-08 Score=108.18 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=125.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChh--------hHHHHHHHHHH----
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAA--------GEMRLRAYAVA---- 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~--------~~~~l~~~~~~---- 764 (922)
+|+.+| +..++.++.|+. |+.+..+++|.++|++.|+ ++|+++|.+.. -+.++++.+.+
T Consensus 278 lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~ 354 (487)
T TIGR02398 278 IRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR 354 (487)
T ss_pred HHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence 677776 567888999875 9999999999999999996 68888886631 12344444433
Q ss_pred ---cCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC----CeeeecCCcchhhhHHHHHHhcC
Q 002431 765 ---QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 765 ---~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~----Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
.|. ...+.|.+.++.++..++|+.+||+|.|+...| ++++.|+++|+. |+|. |+.+++. ..+
T Consensus 355 fg~~~~-~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l- 424 (487)
T TIGR02398 355 FARIGW-TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VEL- 424 (487)
T ss_pred cCCCCC-ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhc-
Confidence 255 356788999999999999999999999999999 999999999988 7773 4443221 111
Q ss_pred CCCcccc--CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 837 LGEEMIV--NSMKEYEERAVSLALDR-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 837 ~~~~~i~--~~~~~~~~~~~~l~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.+.+++ .|.++.++++.+.++.+ +.|++--+.+++.+.. +|...+++.+-...
T Consensus 425 -~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 425 -KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred -CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 121333 58999888877777654 3444444555665543 78888888776544
No 238
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.4e-06 Score=82.19 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 41 AIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
+-++-.|+|..++..-++..... ...+....+.+.|..+|++...+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~ 61 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVI 61 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccc
Confidence 34455566666665555443322 44455555555555555554433
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.86 E-value=3.2e-06 Score=85.26 Aligned_cols=289 Identities=18% Similarity=0.077 Sum_probs=219.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
-+....-.|+-..|.+.-.+.-+.-..+ +-+..+-++...-.|+++.|.+-|+.++..-....-.+..|-......|.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhccc
Confidence 3455566788899998888765433333 55666677888899999999999999875322222223333344457899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHH-HHHHcCCHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN---PLLVD---AHSNLGN-LMKAQGLVQEAY 155 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~---~~~~la~-~~~~~g~~~~A~ 155 (922)
.+.|+.+-+.+....|.-+.++.......+..|+++.|+++.+...... ++..+ +-..-+. ...-..+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 9999999999999999999999999999999999999999998775542 22221 2112122 222345688899
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---HHhh
Q 002431 156 SCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR---AVQT 232 (922)
Q Consensus 156 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~ 232 (922)
..-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|. +++ +..|....--+.++.-+++ +.++
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999899999999999999999999999998876 333 3334443333444444444 4445
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-GRVDEAIQCYNQCLSL 299 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 299 (922)
.|+ .+.....+...+..|++..|...-+.+....|... .+..++.+-... |+-.++...+.++++-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 676 88889999999999999999999999999999866 778888887665 9999999999999874
No 240
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=0.00024 Score=74.23 Aligned_cols=427 Identities=14% Similarity=0.104 Sum_probs=272.0
Q ss_pred hhhHHHHHHHcC--CHHHHHHHHHHHHhhCCCc---hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CC----cHH
Q 002431 2 HMALAHQMYKSG--SYKQALEHSNSVYERNPLR---TDNLLLLGAIY-YQLHDYDMCIARNEEALRLE---PR----FAE 68 (922)
Q Consensus 2 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~----~~~ 68 (922)
++.+|..+-..| +...+++.++.++...|.+ +.....+|.++ ....+.+.|...++++..+. |. .-+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 456788888888 9999999999999877644 44556677655 55789999999999997553 32 246
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---CHHHHH
Q 002431 69 CYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALALN-PL---LVDAHS 139 (922)
Q Consensus 69 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~ 139 (922)
++..++.+|.... .+..|...+++++++..+.+ ...+.+++...-..++..|.+.+.-..+.. +. .....+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7788999998877 88999999999999876654 355678888888999999998844322211 11 111222
Q ss_pred H--HHHHHHHcCCHHH---HHHHHHHHHhhCCCcH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHh---c-CCC-
Q 002431 140 N--LGNLMKAQGLVQE---AYSCYLEALRIQPTFA-------IAWSNLA-GLFMESGDLNRALQYYKEAVK---L-KPT- 201 (922)
Q Consensus 140 ~--la~~~~~~g~~~~---A~~~~~~al~~~p~~~-------~~~~~la-~~~~~~g~~~~A~~~~~~~l~---~-~p~- 201 (922)
. .+.++....+..+ +.....++.+....++ ..+..+- ..|...|+...+...+++..+ . .+.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 2 2233333334333 3444444444332222 1222222 234455776666655554432 1 111
Q ss_pred -----------CHH-----------HHHHHHHH--HHHcCChHHHHHHHHHHHhhC------C-C--------hhHHHhH
Q 002431 202 -----------FPD-----------AYLNLGNV--YKALGMPQEAIMCYQRAVQTR------P-N--------AIAFGNL 242 (922)
Q Consensus 202 -----------~~~-----------~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~------p-~--------~~~~~~l 242 (922)
.+. ++..+... -...|-+++|.++-++++... + . ...+..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 011 11111111 123466777777777776531 1 1 1233445
Q ss_pred HHHHHHcCChHHHHHHHHHHHhc---CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--hHHHHh
Q 002431 243 ASTYYERGQADMAILYYKQAIGC---DPR-------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-H--PQALTN 309 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~---~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~ 309 (922)
+.+-.-.|++.+|++....+.+. .|. .......+|......+.++.|...|..+.+.... + .....+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 56666789999999988888743 444 2345677788888889999999999999887433 2 235567
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC----------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC------CHH
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGL----------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AAD 373 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 373 (922)
++..|.+.++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... ..-
T Consensus 410 lAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 88999998776655554443 34442 234666778888999999999999999987521 123
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCcHHH---HHHHHHHHHhcCC--HHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PTMAEA---HANLASAYKDSGH--VEAAIKSYKQ 431 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~---~~~la~~~~~~g~--~~~A~~~~~~ 431 (922)
.+..++.+....|+..++.+...-+++.. |+.+.. ...+-.+|...|+ .+...+.|.+
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 66778999999999999999888887764 444332 2334456666666 4444444443
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.85 E-value=1.7e-05 Score=80.20 Aligned_cols=291 Identities=18% Similarity=0.048 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAYMR 113 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 113 (922)
+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|+. .--+..|-.-..+
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 345667778899999999988887655544 44555567777889999999999999986 3432 1122333333457
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH-----HHHHHHHHHHHHcCCH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---QPTFA-----IAWSNLAGLFMESGDL 185 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~~ 185 (922)
.|..+.|..+-+.+-...|....+....-...+..|+++.|+++.+..... .++.. ..+...+... -.-+.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence 899999999999999999999999999999999999999999999876553 22221 1222222222 23468
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHH---
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA--- 262 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 262 (922)
..|...-.++.++.|+....-..-+..+.+.|+..++-.+++.+.+..|.+.++ ..|....--+.++.-++++
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999998886543 3444444444455555444
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc-CChhHHHHHHHHHHhcC
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVT 334 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~ 334 (922)
..+.|++.+.....+...+..|++..|..--+.+....|. ..++..++.+-... |+-.++...+.++++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4679999999999999999999999999999999888876 45677778876655 99999999999998753
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=3e-06 Score=87.83 Aligned_cols=456 Identities=15% Similarity=0.085 Sum_probs=252.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHH-HHhcCCHHHHHHHHHHHHhc-----CC----------CcH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI-YYQLHDYDMCIARNEEALRL-----EP----------RFA 67 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~-----~p----------~~~ 67 (922)
..+...+..++|+..++++..+-..+..+...++..+.+ |++.|.... ...+++...+ .| +..
T Consensus 22 ~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t 100 (696)
T KOG2471|consen 22 CQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGT 100 (696)
T ss_pred HHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcch
Confidence 456677788999999999998887776655444554444 455554322 1222221111 11 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cH-HHHHHHHHHHHHcCCHHHHHHHHHH---HHHhC---C--C-
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FA-DAWSNLASAYMRKGRLNEAAQCCRQ---ALALN---P--L- 133 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~-~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~---p--~- 133 (922)
..++..|.+++....+..|++........-.. .+ ..-...-..+....+.++|+.++.- ++... + +
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 56778888888888888888777665543211 11 1222333444555566666655433 22210 0 0
Q ss_pred ------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 134 ------------------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 134 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
...+.......+....+...+....+.+.....+.+.+....+..++..|++.+|.
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~ 260 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM 260 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence 01122223334445555555555555555556677777777788888888888887
Q ss_pred HHHHHHH-hcCCC------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------CC----------ChhHHHh
Q 002431 190 QYYKEAV-KLKPT------F--PDAYLNLGNVYKALGMPQEAIMCYQRAVQT---------RP----------NAIAFGN 241 (922)
Q Consensus 190 ~~~~~~l-~~~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p----------~~~~~~~ 241 (922)
+.+...- ...+. . .-.++++|-+++..|.+.-+..+|.++++. .| .-+..++
T Consensus 261 KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 261 KLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred HHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence 7766541 11121 1 124577888888888888888888887741 11 1456677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHH--H--------------Hhh---
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG---RVDEAIQCYNQ--C--------------LSL--- 299 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~--a--------------l~~--- 299 (922)
.|..|...|++-.|.++|.++....-.++..|..++.++.... -.++......+ . ++.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~ 420 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTY 420 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccce
Confidence 7788888888888888888887777777778888877775431 11111111111 0 000
Q ss_pred --CCC---ChHHHHhHHHHHHHcCCh-----hHHHHHHHHHHhc----------------------------CC-CCc--
Q 002431 300 --QPS---HPQALTNLGNIYMEWNML-----PAAASYYKATLAV----------------------------TT-GLS-- 338 (922)
Q Consensus 300 --~p~---~~~~~~~la~~~~~~~~~-----~~A~~~~~~a~~~----------------------------~~-~~~-- 338 (922)
.+. -+..-..++.++.+.+-+ ..--..+.-+... .| ..+
T Consensus 421 ~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~ 500 (696)
T KOG2471|consen 421 VELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSA 500 (696)
T ss_pred eccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcch
Confidence 000 011111222222211100 0000000000000 00 001
Q ss_pred ---------hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH-----HHHHHhCCHHHHHHHHHHHH-----
Q 002431 339 ---------APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG-----NTYKEIGRVTDAIQDYIRAI----- 399 (922)
Q Consensus 339 ---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~al----- 399 (922)
.++-..+.+-...|+.-.|+..-++.++.. +-..++..+| .+++.+.+..+|...+.--+
T Consensus 501 ~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~-~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~ 579 (696)
T KOG2471|consen 501 FEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA-DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDD 579 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcc
Confidence 124456667778899999999999988763 3344444444 44556677777766543311
Q ss_pred -h-----------------hCCC----------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHH
Q 002431 400 -T-----------------IRPT----------M-----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEATC 444 (922)
Q Consensus 400 -~-----------------~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 444 (922)
. ++|. . ...+++||.+++-+|++++|..++..+..+-+ .++.+..
T Consensus 580 f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~ 659 (696)
T KOG2471|consen 580 FKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATV 659 (696)
T ss_pred cccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHH
Confidence 0 0111 1 23578899999999999999999998888877 4555555
Q ss_pred HHHHhhcccCChhhHhH
Q 002431 445 NLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 445 ~l~~~~~~~~~~~~a~~ 461 (922)
.....-...|+..++..
T Consensus 660 lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 660 LAVYIDLMLGRSQDALA 676 (696)
T ss_pred HHHHHHHhcCCCcchHH
Confidence 44444455566555543
No 243
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=1.4e-08 Score=80.48 Aligned_cols=67 Identities=37% Similarity=0.535 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 002431 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRP 437 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 437 (922)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777888888888888888888888888888888888888888887 67888888888887776
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.84 E-value=9.5e-07 Score=88.01 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=149.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRL----EPR--FAECYGNM 73 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l 73 (922)
+..|..++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++..--..+.. +.. .-+++..+
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888777777775443222 22233445566677777666554333322 111 13456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIELRPNF-----ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLG 142 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la 142 (922)
+..+.+..++.+++.+-+..+...... ..+...++.++.-.+.++++++.|+++++...++ ..++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 666666666666666665555542211 2344455566666666666666666665543221 12455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQPT----FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
.++....++++|.-+..++.++... +...-+ ...+.+.++..+..+|.
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky----------------------------r~~~lyhmaValR~~G~ 221 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY----------------------------RAMSLYHMAVALRLLGR 221 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH----------------------------HHHHHHHHHHHHHHhcc
Confidence 6666666666665555555543111 100000 01133444444444555
Q ss_pred hHHHHHHHHHHHhhC---CC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHcCC
Q 002431 219 PQEAIMCYQRAVQTR---PN----AIAFGNLASTYYERGQADMAILYYKQAIGCD----P--RFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~----p--~~~~~~~~l~~~~~~~g~ 285 (922)
...|.+..+++.++. .+ ......++.+|...|+.+.|..-|+++...- . ...+++...+.++....-
T Consensus 222 LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 222 LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555544444321 11 2233444555555555555555555554221 1 112233334444333222
Q ss_pred HH-----HHHHHHHHHHhhCC----CC--hHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 286 VD-----EAIQCYNQCLSLQP----SH--PQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 286 ~~-----~A~~~~~~al~~~p----~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
.. .|++.-.++++... .. -.....++.+|...|.-++-...+..+-+.
T Consensus 302 ~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 302 QNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 22 25555555554422 11 246677788887777766666666554443
No 245
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=4e-08 Score=84.02 Aligned_cols=99 Identities=34% Similarity=0.619 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 002431 420 GHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~ 438 (922)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
No 246
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=1.3e-07 Score=90.71 Aligned_cols=94 Identities=28% Similarity=0.314 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
....++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++...|++...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455566666666666666666666665544432 345555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCR 125 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~ 125 (922)
.++...|+...+...++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 55555555544443333
No 247
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.81 E-value=1.4e-08 Score=84.09 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPL--RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
+|+|++|+..++++++..|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888877774 455666678888888888888888877 666677777777777888888888888777
Q ss_pred HHHH
Q 002431 90 YLVA 93 (922)
Q Consensus 90 ~~~a 93 (922)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 248
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=4.7e-05 Score=82.68 Aligned_cols=408 Identities=15% Similarity=0.158 Sum_probs=219.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------cCCCcHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--------------------LEPRFAE 68 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 68 (922)
....|+|+.|...++.. ...|+....|..++......|+.--|..+|...-. ..-+-..
T Consensus 454 aid~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 35678999999887764 56777777788888877777776666555543211 1112234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.|...+.......+|.+|...|-.- +..+ ...-+|....++++|+.+.+.. -.|.........-..+...
T Consensus 533 fykvra~lail~kkfk~ae~ifleq-----n~te---~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQ-----NATE---EAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhc-----ccHH---HHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 4555555555556666666655321 1111 1122344555566665543321 1233223333333444445
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHc
Q 002431 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------------FPDAYLNLGNVYKAL 216 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~ 216 (922)
|+-++|-++- ....+. ..-..+|.+.|...+|......--.+..+ ..+.|-.-|.++.+.
T Consensus 603 ~qd~ka~elk-----~sdgd~---laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 603 GQDEKAAELK-----ESDGDG---LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred Cchhhhhhhc-----cccCcc---HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 5544443211 111111 12234455555555544332111111000 022444555666666
Q ss_pred CChHHHHHHHHHH------Hhh----CCC--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 217 GMPQEAIMCYQRA------VQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284 (922)
Q Consensus 217 g~~~~A~~~~~~~------~~~----~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 284 (922)
.++++|+++|++- +++ .|. ...-..-|.-+...|+++.|+..|-++- .......+....+
T Consensus 675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai~ak 746 (1636)
T KOG3616|consen 675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAK 746 (1636)
T ss_pred hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhh
Confidence 6667777666532 221 232 2222334555667777777777776542 2223334455566
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (922)
+|.+|+.+++...... .....|-.++.-|...|+++.|.++|.++- .+..-...|.+.|++++|.++-++.
T Consensus 747 ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh
Confidence 7777777776654332 223455667778888888888888887642 2334566777888888887777665
Q ss_pred HccCCCC-HHHHHHHHHHHHHhCCHHHHHHH-------------HHHH------Hh----hCCCc-HHHHHHHHHHHHhc
Q 002431 365 LRIDPLA-ADGLVNRGNTYKEIGRVTDAIQD-------------YIRA------IT----IRPTM-AEAHANLASAYKDS 419 (922)
Q Consensus 365 l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~-------------~~~a------l~----~~p~~-~~~~~~la~~~~~~ 419 (922)
.. |.. ...|...+.-+-+.|++.+|.+. |.+. +. ..|+. .+....++.-|...
T Consensus 818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc
Confidence 42 322 23444455555555555555443 3321 11 12322 45778899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHH
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
|+...|.+.|-++-+ +....++|...+-|+++.++
T Consensus 896 g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred cChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHH
Confidence 999999999877643 22334455555667776544
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.80 E-value=8.4e-06 Score=83.56 Aligned_cols=222 Identities=28% Similarity=0.405 Sum_probs=149.1
Q ss_pred CChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
+....+...+.......+. .......+..+...+++..+...+..... ..+.....+...+..+...+++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444445544444443 35555556666666666666666666654 455555566666666666666666666
Q ss_pred HHHHHHhhCCCChHHHHhHHH-HHHHcCChhHHHHHHHHHHhcCC---CCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc
Q 002431 292 CYNQCLSLQPSHPQALTNLGN-IYMEWNMLPAAASYYKATLAVTT---GLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (922)
.+.++....+.+......... ++...|+++.|...+++++...+ .....+...+..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666665555444444444 66677777777777777666444 23444555555566777888888888888888
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 368 DPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 368 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+. ....+..++..+...+++++|...+..++...|.....+..++..+...+..+++...+.+.++..|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777 57788888888888888888888888888888776667777777777667788888888888888776
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.6e-08 Score=99.02 Aligned_cols=98 Identities=27% Similarity=0.366 Sum_probs=72.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++.+++.++.+++++.+|+...++++.++|+|..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred CCHHHH-HHHHHHHHhcCC
Q 002431 420 GHVEAA-IKSYKQALLLRP 437 (922)
Q Consensus 420 g~~~~A-~~~~~~al~~~p 437 (922)
.++.+. .+.|.+++..-+
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 554443 667777666543
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.80 E-value=2.3e-05 Score=80.21 Aligned_cols=223 Identities=33% Similarity=0.388 Sum_probs=144.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 46 LHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIE--LRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.+.+..+...+.......+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666677777777666665 366677777777777777777777777776 56666677777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 122 QCCRQALALNPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
..+.++....+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766655444444444 67777777777777777766554 2344444555555666677777777777776
Q ss_pred cCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 198 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
..+. ....+..++..+...+++++|...+..++...|. ...+..++..+...+..+++...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666 4666666666666666666666666666666555 344444444444445556666666665555554
No 252
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=1.4e-07 Score=90.16 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Q 002431 8 QMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGD 82 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~ 82 (922)
-++-.+.|..+...+.++++.++.+ ...++.+|.++...|++++|+..|++++...|+ .+.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3455566777888887776655544 667788888888899999999999999877665 34578888999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+++|+..+++++..+|.....+..++.++...|
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999998888888888888888887443
No 253
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=2e-07 Score=89.36 Aligned_cols=118 Identities=25% Similarity=0.292 Sum_probs=96.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (922)
..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778899999999999999999999999876653 46888999999999999999999999999999888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
|.++...|+...+...+++++. .+++|.+.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 9999888887777665555442 2567777888887777765
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=5.9e-07 Score=83.08 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|...-+..+.|..+.--
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCcH
Q 002431 149 GLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~ 169 (922)
|++.-|.+.+.+..+.+|+++
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred CchHhhHHHHHHHHhcCCCCh
Confidence 555555555555555555544
No 255
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=7e-08 Score=82.43 Aligned_cols=95 Identities=34% Similarity=0.523 Sum_probs=46.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444555555555555555555544444444444455555555555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHHhcC
Q 002431 83 IDLAIRYYLVAIELR 97 (922)
Q Consensus 83 ~~~A~~~~~~al~~~ 97 (922)
+++|...+.++++..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 444444444444433
No 256
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=1.4e-06 Score=90.94 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHH
Q 002431 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--N----FADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 121 (922)
++++|...|+++ |.+|...|++++|.+.|.++.+..- + -...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666554 4555666666666666666543210 0 112233333443333 566666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p 200 (922)
..+++++. +|...|++..|-.. +..+|.+|... |++++|++.|+++.+...
T Consensus 95 ~~~~~A~~--------------~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 95 ECYEKAIE--------------IYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHH--------------HHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66655542 23333333333222 23344444444 555555555555544311
Q ss_pred C--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 201 T--F----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 201 ~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
. . ...+..++.++...|++++|++.|++.....-+ ...+...+.++...|+...|...+++....+
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 1 123445555555555555555555555443211 1123334444445555555555555555444
Q ss_pred C
Q 002431 267 P 267 (922)
Q Consensus 267 p 267 (922)
|
T Consensus 227 ~ 227 (282)
T PF14938_consen 227 P 227 (282)
T ss_dssp T
T ss_pred C
Confidence 4
No 257
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=3.8e-07 Score=84.59 Aligned_cols=122 Identities=23% Similarity=0.183 Sum_probs=71.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWK 78 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 78 (922)
.+...+..++...+...++++.+.+|++ ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3444445666666666666666666655 4455556666666666666666666666655433 345556666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666666666442 222334455566666666666666666666654
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=4e-07 Score=84.18 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44566668888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCChhHHHhHHHHHHHcCChHHHHHHH
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR-AVQTRPNAIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
--|++.-|.+-+.+..+.+|++|.--..+- +-...-++.+|..-+.+ +...+.+..-|. +...|...=..+ ..+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~-iV~~yLgkiS~e---~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWN-IVEFYLGKISEE---TLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHH-HHHHHHhhccHH---HHH
Confidence 999999999999999998998875322221 11233456666655544 333332222222 222222111111 122
Q ss_pred HHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 260 KQAIGCDPRF-------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 260 ~~~l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
+++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2322222121 3577888888888888888888888877654
No 259
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=3.8e-08 Score=78.02 Aligned_cols=66 Identities=36% Similarity=0.568 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRP 98 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 98 (922)
+..+..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555544
No 260
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=2e-07 Score=89.10 Aligned_cols=101 Identities=27% Similarity=0.377 Sum_probs=59.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
.++.+|.++..+|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++++.|.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34555555555555555555555555554332 235555666666666666666666666666555555555555555
Q ss_pred H-------hcCCHH-------HHHHHHHHHHhcCCCCH
Q 002431 417 K-------DSGHVE-------AAIKSYKQALLLRPDFP 440 (922)
Q Consensus 417 ~-------~~g~~~-------~A~~~~~~al~~~p~~~ 440 (922)
. ..|+++ +|..+|++++..+|++.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 5 555544 66667777777887654
No 261
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=3.4e-08 Score=77.15 Aligned_cols=63 Identities=35% Similarity=0.593 Sum_probs=41.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (922)
.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666666666666666666666666666666666654
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=7.8e-07 Score=93.78 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=60.4
Q ss_pred HHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 50 DMCIARNEEAL---RLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 50 ~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 117 (922)
+.|+.+|.+++ ..+|..+.+|..++.++... .+..+|.+..+++++++|.++.++..+|.++...+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 34555555555 55555555555555554432 1233444445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
+.|...|++++.++|+.+.+++..|.+..-.|+.++|.+.++++++++|.-
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 555555555555555555555555555555555555555555555555443
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.9e-07 Score=95.77 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC----Cc-----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP----LR-----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 69 (922)
.|..+++.|+|..|...|+++++.-. .+ ..+++.++.|+.++++|.+|+...++++..+|+|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 45667777777777777777654211 00 2234445555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 002431 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA-AQCCRQALA 129 (922)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~ 129 (922)
++..|.++...|+|+.|+..|+++++..|+|..+...+..+..+..++.+. .+.|.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555555555555444444444443333222 344444443
No 264
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=6.2e-07 Score=93.54 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=66.2
Q ss_pred HhHHHHHHHc-CChhHHHHHHHHHHhcCCCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC----C--H-H
Q 002431 308 TNLGNIYMEW-NMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL----A--A-D 373 (922)
Q Consensus 308 ~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~-~ 373 (922)
..+|.+|... |++++|+++|+++....... ...+..++.++.+.|+|++|++.|++.....-+ . . .
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3345555555 55555555555555442111 123445666666777777777777666553211 1 1 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AEAHANLASAYKD--SGHVEAAIKSYKQALLL 435 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~ 435 (922)
.++..+.|+...|+...|.+.+++....+|.. ......|..++.. ...+++|+.-|.++-++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34555666667777777777777776666532 2344445555544 23566666666555444
No 265
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.73 E-value=5.1e-08 Score=76.16 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3556666666666666666666666666666666666666666666666666666666666653
No 266
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=3.5e-08 Score=81.64 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 666677777777777788888888888777
Q ss_pred HHHH
Q 002431 429 YKQA 432 (922)
Q Consensus 429 ~~~a 432 (922)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 267
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.72 E-value=7.3e-07 Score=99.72 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRK--------GRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~ 152 (922)
..+|+.+|+++++.+|+++.++..++.++... .+..++.+..++++.. ++.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 1223444444444442 4455556666666666666666
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
+|...+++++.++| +..+|..+|.++...|++++|++.+++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 66666666666666 3556666666666666666666666666666666553
No 268
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=4.6e-07 Score=101.27 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc--------CCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhCCHH
Q 002431 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ--------GNYADAISCYNEVLRI--DPLAADGLVNRGNTYKEIGRVT 389 (922)
Q Consensus 320 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 389 (922)
..+|+.+|+++++.+|++..++-.++.++... .+..++.+..++++.+ +|.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 2345666666676664 6777888999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+|...++++++++|+ ..+|..+|.++...|+.++|.+.|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999995 789999999999999999999999999999999884
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=8.1e-07 Score=93.65 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 14 SYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQL---------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 14 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
..+.|+.+|.+++ ..+|....++-.++.|++.. .+..+|....+++++.+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3568899999999 88899999999999998765 24568899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQEAYSCYLE 160 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 160 (922)
+++.|...|++++.++|+.+.+|+..|......|+.++|.+.++++++++|....+-...-.+ .+-....++|+.+|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999876654444344 4445567778777755
Q ss_pred HH
Q 002431 161 AL 162 (922)
Q Consensus 161 al 162 (922)
-.
T Consensus 433 ~~ 434 (458)
T PRK11906 433 ET 434 (458)
T ss_pred cc
Confidence 43
No 270
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=3.9e-07 Score=92.31 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=80.1
Q ss_pred chHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Q 002431 32 RTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAW 104 (922)
Q Consensus 32 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 104 (922)
+....+..+..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345556666655 55678888888888888887776 467888888888888888888888888877665 46677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002431 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138 (922)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 138 (922)
+.+|.++...|++++|...|+++++..|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 7778888888888888888888888887766543
No 271
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=2.6e-07 Score=83.42 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=90.7
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
++.-...+..|.-++.+|++++|..+|+-....+|.+++.+..+|.++..+|++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33445567778888899999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
||..+|+.++|+..|+.+++ .|.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999888 34443
No 272
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=4.3e-07 Score=91.99 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred hhhhhHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHH
Q 002431 339 APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHAN 411 (922)
Q Consensus 339 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 411 (922)
..++..+..+ .+.|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555554 56789999999999999999887 579999999999999999999999999988776 4778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|.++...|++++|+..|+++++..|++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999987654
No 273
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=6.1e-07 Score=95.57 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.+...++++.|++.+++..+.+|+ ....++.++...++-.+|++.+.++++..|.+...+...+..+.+.++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334445666666666666655543 44456666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666666666666666666666555433
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.65 E-value=0.0015 Score=71.13 Aligned_cols=397 Identities=11% Similarity=0.047 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM-RKGRLNEAAQCCRQAL 128 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l 128 (922)
+.+...|...+...|..-..|...|..-.+.|..+.+.++|++.+..-|-....|..+..... ..|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 555556666666677777777777777777777777777777777777766666655444333 3456666666677666
Q ss_pred HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhc-
Q 002431 129 ALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES------GDLNRALQYYKEAVKL- 198 (922)
Q Consensus 129 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~- 198 (922)
..... ....|-.+......++++..-...|++.++.--.....++..=.-+.+. ...+++.+.-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 55432 2234445555556666677777777776654222211111111111111 1111111111111100
Q ss_pred -CCCC---HHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh--------c
Q 002431 199 -KPTF---PDAY-LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG--------C 265 (922)
Q Consensus 199 -~p~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------~ 265 (922)
.+.. .+.+ ...-.+-...+..+++...+.+... ..-.++.......+.+..++..++ .
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------HHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 0000 0000 0000000000111111111111111 111222233334444444554442 2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-CCCchhhhhH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNL 344 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 344 (922)
++.....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. +..+.+...-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 333456777778888889999999999999988888888999999999999999999998888887765 5566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHhhCCC---cHHHHHHHHHHHHh
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ---DYIRAITIRPT---MAEAHANLASAYKD 418 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~~~~ 418 (922)
+..-...|++..|...+++..+..|....+-........+.|+.+.+.. .+.....-..+ ....+...++...+
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 7777788899999999999988888888888888888888999888874 33333222111 13344555554444
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCC
Q 002431 419 -SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (922)
Q Consensus 419 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 455 (922)
.++.+.|...+.++.+..|++...+..++......+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 6789999999999999999999888888877766553
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.64 E-value=6.5e-07 Score=87.74 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
|..|..+++.|+|.+|...|...++..|++ +.++++||.+++.+|+|++|...|..+.+..|+. +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 344444555555555555555555544433 3445555555555555555555555554444432 3444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 77 WKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
...+|+.++|...|+++++..|+..
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 4444444444444444444444433
No 276
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=1.2e-06 Score=79.25 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=85.7
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhh
Q 002431 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFN 342 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 342 (922)
.++.++..+..+..|.-+...|++++|...|+-....+|.+++.+..||.++...+++++|+..|..+..+.++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34555566677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
..|.++...|+.++|+.+|+.+++
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 888888888888888888888877
No 277
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.59 E-value=0.0011 Score=68.85 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
-+++-++.+|++...|+.+.+-+..++.+++-.+.++++..-.|-.+.+|......-...+++.....+|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455566778888888888888888888888888888887777777777776666666667777777777777765433
Q ss_pred HHHHHHHH
Q 002431 101 ADAWSNLA 108 (922)
Q Consensus 101 ~~~~~~la 108 (922)
.+.|....
T Consensus 109 ldLW~lYl 116 (660)
T COG5107 109 LDLWMLYL 116 (660)
T ss_pred HhHHHHHH
Confidence 44444433
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.57 E-value=5.5e-08 Score=95.77 Aligned_cols=226 Identities=15% Similarity=0.105 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+-..|.-|+++|+|++|+.+|.+.+..+|.++..+.+.+.+|++...+..|......++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHcCCHH
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA---------WSNLAGLFMESGDLN 186 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~ 186 (922)
+..+|.+-++.++++.|++.+....++.+.. ..++.- +.+..|....+ ...-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999987776555544432 222211 11111221111 112345567778888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
.++..+-.-+.....+...-.+ +..+.+..+++.++.-..+.....|. ......-+.+-.-.|...++...++.++..
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 8887777665544443333333 56677777888888887777766654 333333444444456677888888888888
Q ss_pred CCCcH
Q 002431 266 DPRFL 270 (922)
Q Consensus 266 ~p~~~ 270 (922)
.|.+.
T Consensus 331 ~P~~~ 335 (536)
T KOG4648|consen 331 APAVE 335 (536)
T ss_pred ccccc
Confidence 77754
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.57 E-value=6.7e-08 Score=95.17 Aligned_cols=226 Identities=18% Similarity=0.172 Sum_probs=144.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC-ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
-..|+-|+++|+|++|+.+|.+.+...| +...+.+.+.+|++.+.+..|..-+..++.++.....+|...+.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3456666667777777777777766666 366666667777777777777777777776666667777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh---------hhhHHHHHHHcCCHHH
Q 002431 286 VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLAVIYKQQGNYAD 356 (922)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~la~~~~~~g~~~~ 356 (922)
..+|.+.++.++++.|++.+..-.++.+-. ..++.- +.+..|....+ ...-|..+...|.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 777777777777777776554443333221 111110 11111111111 1233566677788888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
++.++..-+.....+...-.+ +..+.+.-++++|+....+++..+|........-+.+---.|...++...++.++.+.
T Consensus 253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 888777666554444433333 6777888889999988888888887765555555555555677788888888888888
Q ss_pred CCCHH
Q 002431 437 PDFPE 441 (922)
Q Consensus 437 p~~~~ 441 (922)
|.+..
T Consensus 332 P~~~~ 336 (536)
T KOG4648|consen 332 PAVET 336 (536)
T ss_pred ccccc
Confidence 87643
No 280
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.55 E-value=2.1e-06 Score=91.46 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002431 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (922)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (922)
+...+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455567788888888887777765 45567777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.|+...+++.+..|++...|..|+.+|...|++++|+..++.+-.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888888888888888888888888877765543
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.55 E-value=0.0019 Score=67.31 Aligned_cols=424 Identities=14% Similarity=0.042 Sum_probs=236.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 77 (922)
...|..+-+++++.+|.+.|.++.+....++ +.+..+..-.+-+++.+.-...+...-+..|..+......|...
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4567888899999999999999987654442 33333444445667778777777777778888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C----CCHHH
Q 002431 78 KEKGDIDLAIRYYLVAIELRPN---------------FADAWSNLASAYMRKGRLNEAAQCCRQALALN-P----LLVDA 137 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p----~~~~~ 137 (922)
++.+++.+|++.+..-.+.-.. +...-...+.++...|++.++...+++++..- + -+.+.
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 9999999999988766554111 01122346788899999999999999987653 2 24444
Q ss_pred HHH----HHHHHHH----cCCHHHHHHHHHHHH-------hh--------CCCcHHHHHHHHHHHH----HcCCHHHHHH
Q 002431 138 HSN----LGNLMKA----QGLVQEAYSCYLEAL-------RI--------QPTFAIAWSNLAGLFM----ESGDLNRALQ 190 (922)
Q Consensus 138 ~~~----la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~~~~~~~la~~~~----~~g~~~~A~~ 190 (922)
|.. +|..|.- ....+-+..+|+.++ .. .|...-.-..+-.++. +.--+-++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 444 3333321 111111112221111 00 1111000000000000 0000111122
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR-----PN-AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
.+++- -.+|+..-+...+..-... +.+++....+.+.... .. ...+..+.....+.++..+|.+++.-...
T Consensus 250 ~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22110 1233332222222222222 4444444444333221 11 34455556666778888888888887777
Q ss_pred cCCCcHHHHH------HHHHHHH-HcCCHHH---HHHHHHHHHhhCCCCh---HHHHhHHHHHHHcCC-hhHHHHHHHHH
Q 002431 265 CDPRFLEAYN------NLGNALK-DVGRVDE---AIQCYNQCLSLQPSHP---QALTNLGNIYMEWNM-LPAAASYYKAT 330 (922)
Q Consensus 265 ~~p~~~~~~~------~l~~~~~-~~g~~~~---A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-~~~A~~~~~~a 330 (922)
.+|+.....- .+-.+.+ ...++.+ =+..++.+-..+-+.. ..+..-+.-+++.|. -++|+.+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 8887652111 1111111 1111222 2223333322233322 234455666778877 88899999999
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHH--HHHHHHc---------cCC---CCHHHHHHH--HHHHHHhCCHHHHHHH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAIS--CYNEVLR---------IDP---LAADGLVNR--GNTYKEIGRVTDAIQD 394 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~l--~~~~~~~g~~~~A~~~ 394 (922)
++..+.+...-+..- ... ...|.+|+. .+.+.++ +.| .+.+.-+.+ |..++..|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~-~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVF-LFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHH-HHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 988887765433221 111 112333322 1122221 122 223333333 5567788999999988
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
-.=..+..| ++.++..+|.+.....+|++|..++.+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888999 7999999999999999999999998765
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=2.5e-05 Score=75.92 Aligned_cols=183 Identities=19% Similarity=0.165 Sum_probs=92.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (922)
+..|...++.|+|++|++.|+.+....|.+ ..+...++.++++.+++++|+..+++-++..|.+ ..+++..|.+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 344555555555555555555555544432 3444555555555555555555555555555443 2234444444
Q ss_pred HHHcC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 77 WKEKG--------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 77 ~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
++..= -..+|+..|+..+...|++.-+-..... +..+... ...--...|..|.+.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~IaryY~kr 180 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIARYYLKR 180 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHHHHHHh
Confidence 33211 1223444444444444443211000000 0000000 011224567778888
Q ss_pred CCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 149 GLVQEAYSCYLEALRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
|.+-.|+.-++.+++..|+. ..++..+..+|...|-.++|...-.-+-...|++
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 88888888888888775544 3566677777888888887776655444444544
No 283
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1.9e-06 Score=94.25 Aligned_cols=171 Identities=18% Similarity=0.080 Sum_probs=121.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCCh-hhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
++..+||+. +.++|+.++|+ +|+.+.++++...+++.. .+++++|.|. .-++.+...+..+. +++.+.-.
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~ 356 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIG 356 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEee
Confidence 677889983 56899999987 599999999999999877 8899999772 22456777666653 35554443
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-------------
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV------------- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~------------- 843 (922)
.+..-....|..+|++|.||.|++ |.|-++||..|++.|. .++| ||.+ .|.
T Consensus 357 ~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLad-TV~~~~~~~~~~~gtG 421 (487)
T COG0297 357 YDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLAD-TVVDRNEWLIQGVGTG 421 (487)
T ss_pred ecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------Cccc-eecCccchhccCceeE
Confidence 333444556899999999999999 9999999999998774 4444 5555 222
Q ss_pred -----CCHHHHHH---HHHHHhcCHHH-HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 844 -----NSMKEYEE---RAVSLALDRQK-LQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 844 -----~~~~~~~~---~~~~l~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.+++++.. +|+.+..++.. .+.++ +..+ ...|+++..+.+..+.|+.+..
T Consensus 422 f~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~---~~~m--~~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 422 FLFLQTNPDHLANALRRALVLYRAPPLLWRKVQ---PNAM--GADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHH---Hhhc--ccccCchhHHHHHHHHHHHHhc
Confidence 25555543 44455555444 22222 2223 2469999999999999998865
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.1e-06 Score=80.19 Aligned_cols=106 Identities=27% Similarity=0.331 Sum_probs=91.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
.-|.-++..|+|++|..-|..++.+.|..+ ..|.+.|.++.+++.++.|+....++++++|.+..++.+.+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 346677888899999999999998887653 367788999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
++.++++|++-|+++++.+|....+.-..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999999998776655443
No 285
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.52 E-value=3.3e-06 Score=99.15 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=128.0
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeE--EEEe--c-----CChhhHHHHHHHHHH-------
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSA--LWLL--R-----FPAAGEMRLRAYAVA------- 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~--l~~~--~-----~~~~~~~~l~~~~~~------- 764 (922)
+|+.++ +..++.++.|+. |+++.-+.+|.++|+..|+.+ ++++ . +++. .+.++..+.+
T Consensus 356 lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~V~rIN~ 431 (934)
T PLN03064 356 LKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPE-YQKLTSQVHEIVGRING 431 (934)
T ss_pred HHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHH-HHHHHHHHHHHHHHHhh
Confidence 555554 456788888874 999999999999999999853 4444 2 3332 3444444432
Q ss_pred -cCC-CCCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc-----CCCeeeecCCcchhhhHHH-HHHh
Q 002431 765 -QGV-QPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLA 834 (922)
Q Consensus 765 -~g~-~~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~-----g~Pvv~~~~~~~~~r~~~~-~~~~ 834 (922)
.|- +..=|++.. .++..++.++|+.+||||.|+..+| ++++.|+|+| |++|+. .-.|++ .|
T Consensus 432 ~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L-- 502 (934)
T PLN03064 432 RFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL-- 502 (934)
T ss_pred hccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh--
Confidence 232 111155554 3788999999999999999999999 9999999999 666662 222222 22
Q ss_pred cCCCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 835 TGLGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 835 ~g~~~~~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
|-.. +++ .|.++.++++.+.++ +++.++...+.+++.+.. +|...+++.+.......|..
T Consensus 503 -~~~A-llVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 503 -GAGA-ILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred -CCce-EEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 3223 332 589999999888777 888898888889888754 89999999988877777643
No 286
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.50 E-value=2.5e-06 Score=75.42 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=52.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.+ ..+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3556666777777777777777776666533 5566667777777777777777777777776654 345666666
Q ss_pred HHHHcCC
Q 002431 76 AWKEKGD 82 (922)
Q Consensus 76 ~~~~~g~ 82 (922)
+++.+..
T Consensus 93 ~~~~~~~ 99 (142)
T PF13512_consen 93 SYYEQDE 99 (142)
T ss_pred HHHHHhh
Confidence 6655544
No 287
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.50 E-value=3.9e-07 Score=71.91 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN 75 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 75 (922)
++.|++++|++.|++++..+|++..+++.++.++++.|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 556777777777777777777777777777777777777777777777777777766655555543
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=4.4e-05 Score=74.26 Aligned_cols=175 Identities=21% Similarity=0.219 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD---AHSN 140 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~ 140 (922)
+..++.-|....+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++.+++.|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 455666666666777777777777766666554 3446666677777777777777777777776665443 3444
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002431 141 LGNLMKAQ--------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNV 212 (922)
Q Consensus 141 la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 212 (922)
.|.++... .-..+|...|+..+...|++..+-..... +..+.. .-..--..+|+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d------~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLND------ALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHH------HHHHHHHHHHHH
Confidence 44443321 11234555555555555554322111100 000000 001122344555
Q ss_pred HHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHH
Q 002431 213 YKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
|.+.|.+..|+.-++.+++..|+ .+++..+..+|...|-.++|...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 56666666666666666555444 34445555555555555555443
No 289
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00011 Score=70.41 Aligned_cols=186 Identities=21% Similarity=0.328 Sum_probs=131.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 287 (922)
..+.+....|+..+.+.-+..+... ...+..........+..++.+++-+. ...+.+..++.-.|.|.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTV------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence 3455666677777776666555432 11122223333334556666666543 35677788888889999
Q ss_pred HHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC------CCCchhhhhHHHHHHHcCCHHHHHHH
Q 002431 288 EAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 288 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+...+.. ..+..+..+.+.++.-.+++.+|...
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 9999999998887 6678888889999999999999988888554332 22334455667777777888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (922)
+.+++..+|.++.+.++.+.|+.-.|+..+|++.++.+++..|..
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888888888888888888888888888888888888877763
No 290
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00088 Score=75.96 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=149.3
Q ss_pred HHHHHHHhhC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 20 EHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 20 ~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
.+.++++... ..+++....-..+++..+-..+-++++++.+-.+.. +......+.....+ -+.....++.++.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 4555555432 244555555566677777777777777776533221 22222222222221 2223333333333
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL----------------------NPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~ 151 (922)
-..+.. .+|.+....+-+++|...|++.-.. .-+.+..|..+|....+.|..
T Consensus 1047 dnyDa~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1047 DNYDAP------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred ccCCch------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 222211 1233333444444444444432100 012344555555555555555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
.+|++.|-++ +++..|........+.|.|++-+.++.-+.+.... +.+-..+..+|.+.++..+-.+.+
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----
Confidence 5555555332 33444555555555555555555555444332211 223333444444444444333222
Q ss_pred hCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHH
Q 002431 232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (922)
Q Consensus 232 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (922)
..|+..-....|.-++..+.|+.|.-+|... .-|..++..+...|+|..|...-+++ ++..+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 2344334444555555555555555444332 23445555555556665555555443 2233444444
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
.++...+.+.-|.-+=-.. --.++-+-.+...|...|-+++-+.+++.++-+...+-..+..+|..|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 4433333332222110000 00112233455666666777777777766666655555555555555544
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.47 E-value=0.00044 Score=75.44 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
|.-+...|+++.|+..|-++-. ............++.+|+.+++....... ....|-.++.-|...|+++.
T Consensus 713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHH
Confidence 4445556666666665544421 11222333444556666665554433221 12334455666666677777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHH
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
|.++|.++ .....-..+|.+.|++++|.++-++..........|...+.-+-+.|++.+|.++|
T Consensus 784 ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 784 AEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 66666553 22233345666666776666666555432222445555555555566665555444
No 292
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=2.9e-06 Score=83.25 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=92.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANLAS 414 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 414 (922)
.+..+.-+++.|+|.+|...|...++..|++ +++++.||.+++.+|++++|...|..+.+..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5677777888999999999999999988866 6799999999999999999999999999987654 788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
+...+|+.++|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999876653
No 293
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0013 Score=74.76 Aligned_cols=327 Identities=16% Similarity=0.149 Sum_probs=169.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002431 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP---NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (922)
.+++.-..-..++...+-..+-++++++.+-.+. ++......+.....+ -+.....++.++.-..+.. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch------hH
Confidence 4566666777888888999999999999875332 233333444433333 3455666677666444322 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 002431 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQE 221 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 221 (922)
+.+....+-+++|...|++.- -+..+..- +....++.+.|.++.+++ +.+.+|..++.+....|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 455566666777777765421 11111111 112234444554444443 334555555555555555555
Q ss_pred HHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 222 AIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 222 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
|++.|-++ .++..|........+.|.|++-+.++.-+-+.... +..-..+..+|.+.++..+-.+.. ..|
T Consensus 1123 AieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gp 1192 (1666)
T KOG0985|consen 1123 AIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGP 1192 (1666)
T ss_pred HHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCC
Confidence 55555433 12344445555555555555555555444322111 112223333444444443332221 122
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc--------------
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-------------- 367 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 367 (922)
+.. -.-..|+-++..+.|+.|.-+|... .-|..++..+...|+|..|...-+++-..
T Consensus 1193 N~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred Cch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 222 1223444444455555544444322 12444455555555555555444444221
Q ss_pred ----------C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002431 368 ----------D-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (922)
Q Consensus 368 ----------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (922)
+ --+++-+-.+...|...|-+++-+..++.++-+...+...+..||..|.+-+ +++-.+.++
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~ 1336 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLK 1336 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 0 0224455667778888899999999999998887777777888888887653 444444443
No 294
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.44 E-value=5.5e-06 Score=90.56 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=109.0
Q ss_pred CCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCC-------------
Q 002431 708 GLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP------------- 769 (922)
Q Consensus 708 ~l~~~~~~~~~~--~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~------------- 769 (922)
+++++..+++.+ +|. .++.+.++++..++.++ |+..+++.-.+....+.+++...+.|+..
T Consensus 200 ~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 278 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQK 278 (396)
T ss_pred ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhcc
Confidence 565554444433 232 25667889888888666 77777654323233567777777667632
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc----CCCCccccCC
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT----GLGEEMIVNS 845 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~----g~~~~~i~~~ 845 (922)
+.+.+.+. ..+....|+.+|++|.. .|+++.|++.+|+|+|..+.+.. ...+.++... |-...++..+
T Consensus 279 ~~~~v~~~--~~~~~~~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~ 350 (396)
T TIGR03492 279 GTLEVLLG--RGAFAEILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKN 350 (396)
T ss_pred CceEEEec--hHhHHHHHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCC
Confidence 12455443 35667789999999965 44666999999999999985422 2233344432 4333122356
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 846 MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 846 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
.+..++.+.++..|++.+.++++..+.++ ......+++++.+.+
T Consensus 351 ~~~l~~~l~~ll~d~~~~~~~~~~~~~~l--g~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLADPELLERCRRNGQERM--GPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 78999999999999999988886555544 223455555555443
No 295
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.43 E-value=9.3e-05 Score=80.94 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=109.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..++|.+++...=. .++++...+.+...+...++-.|. . +. ...++ ++.++..++.|..+.+ ..+|
T Consensus 237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~--~-~~------~~~~~-p~n~~v~~~~p~~~~l---~~ad 302 (406)
T COG1819 237 RPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG--A-RD------TLVNV-PDNVIVADYVPQLELL---PRAD 302 (406)
T ss_pred CCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc--c-cc------ccccC-CCceEEecCCCHHHHh---hhcC
Confidence 44677788754422 677776666666666433333332 1 11 12356 6899999998876655 6699
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+ +.+|.+|+.|||..|||+|..+.. +-.-.-+..+..+|... .+- .+++...+.+.+++.|+..++..++
T Consensus 303 ~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 303 AVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred EEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998 456689999999999999998876 22223445666778876 554 5788889999999999998887555
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..+... +.-..+..++.+|+..++
T Consensus 378 ~~~~~~---~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 378 LAEEFK---EEDGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHhh---hcccHHHHHHHHHHHHhc
Confidence 554432 224466788888876643
No 296
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.42 E-value=3.3e-05 Score=69.99 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=74.6
Q ss_pred HHhHHHHHHHcCChhHHHHHHHHHHhc-CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHH
Q 002431 307 LTNLGNIYMEWNMLPAAASYYKATLAV-TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYK 383 (922)
Q Consensus 307 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 383 (922)
.+.++....+.|++.+|...|++++.- .-.++..+..++...+..+++.+|...+++..+.+| ..++....+|..+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 344555555555555555555555432 344555555666666666666666666666666655 33556666667777
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
..|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+..
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 777777777777777766665 45555566666667766665544433
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.42 E-value=0.0093 Score=69.69 Aligned_cols=178 Identities=17% Similarity=0.080 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhCC----CchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHH
Q 002431 16 KQALEHSNSVYERNP----LRTDNLLLLGAIYY-QLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDID 84 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 84 (922)
..|++.++-+++..+ ....+.+.+|.+++ ...+++.|..++++++....++ ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345666666664222 22556677777776 6678888888888887665331 234556677777777666
Q ss_pred HHHHHHHHHHhcCCC---cHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 002431 85 LAIRYYLVAIELRPN---FAD-AWSNL--ASAYMRKGRLNEAAQCCRQALALN--PLLVDA----HSNLGNLMKAQGLVQ 152 (922)
Q Consensus 85 ~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~~ 152 (922)
|....++.++...+ ... ..+.+ +..+...+++..|.+.++...... ..++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887765333 111 11111 222223368888888888776654 233332 223345555666677
Q ss_pred HHHHHHHHHHhhC----------CCcHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 002431 153 EAYSCYLEALRIQ----------PTFAIAWSNLAGL--FMESGDLNRALQYYKE 194 (922)
Q Consensus 153 ~A~~~~~~al~~~----------p~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 194 (922)
++++..+++.... +....+|..+..+ +...|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777776664321 1223344444433 3445665555544443
No 298
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=7e-06 Score=71.68 Aligned_cols=94 Identities=24% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLA 108 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 108 (922)
+++.++.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34444445555555555555555554433222 334444455555555555555555554444444 334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQAL 128 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l 128 (922)
.++...|+.++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44445555555544444433
No 299
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=9.6e-07 Score=69.68 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=30.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
+.|++++|+..|+++++.+|++..+++.++.++.+.|++++|...+++++..+|+++.++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554444443333
No 300
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.39 E-value=3.7e-06 Score=71.14 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=80.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHh
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKD 418 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 418 (922)
.-|..+.+.|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. -.++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 346666777888888888888888888888888888888888888888888888888875432 3467778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
.|+-+.|..-|+.+-+++..+..-..-.++-|
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 88888888888888888766554433333333
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=5.2e-05 Score=78.90 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=211.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCC--------cHHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA-LRLEPR--------FAECYGNMAN 75 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~ 75 (922)
..+.+++..+...+....+.+.....+++.+++..++.++..|++.+|.+.+... +...|. .-..|+++|-
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 4456677777777777777777777788899999999999999999999887654 222222 2335678999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc---------C---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 76 AWKEKGDIDLAIRYYLVAIEL---------R---------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 76 ~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++++.|.|.-+..+|.+++.. . ...-+..++.|..|...|+.-.|.++|.++....-.++..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999851 1 1235678889999999999999999999999998889999
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHH--------------H--Hhh-----CCC---cHHHHHHHHHHHHHcC-----CH
Q 002431 138 HSNLGNLMKAQGL---VQEAYSCYLE--------------A--LRI-----QPT---FAIAWSNLAGLFMESG-----DL 185 (922)
Q Consensus 138 ~~~la~~~~~~g~---~~~A~~~~~~--------------a--l~~-----~p~---~~~~~~~la~~~~~~g-----~~ 185 (922)
|..++.++....+ .++......+ . ++. .+. -+..-..++.+..+.+ .-
T Consensus 372 WLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~ 451 (696)
T KOG2471|consen 372 WLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEK 451 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchh
Confidence 9999988764221 1111111111 0 000 000 0111112222222111 00
Q ss_pred HHHHHHHHHHHhc----------------------------CC-CCH-----------HHHHHHHHHHHHcCChHHHHHH
Q 002431 186 NRALQYYKEAVKL----------------------------KP-TFP-----------DAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 186 ~~A~~~~~~~l~~----------------------------~p-~~~-----------~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
..--..+.-+... .| +.+ .++...+.+-...|+.-.|+..
T Consensus 452 q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~ 531 (696)
T KOG2471|consen 452 QDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSA 531 (696)
T ss_pred hcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 0000000000000 01 111 1456677778889999999999
Q ss_pred HHHHHhhCCChhHHHhHHHHH-----HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 226 YQRAVQTRPNAIAFGNLASTY-----YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 226 ~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
-+++++...-..++..+|.+| +...+..+|...+.--+--+.+..-.+ .....+.+.+--+.++..-...
T Consensus 532 a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~-----n~~Df~~~~~~~e~l~~s~~r~ 606 (696)
T KOG2471|consen 532 ATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY-----NQEDFDQWWKHTETLDPSTGRT 606 (696)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc-----chhhhhhhhccccccCCcCCCC
Confidence 999998754466666665555 456777777776654321100100000 0001111110001111111111
Q ss_pred CC---------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC--CCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 002431 301 PS---------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYADAISCYNEVL 365 (922)
Q Consensus 301 p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 365 (922)
++ ....++++|.++.-+|++++|..++..+..+-+ .++.+......+-.+.|+...|+..+++.-
T Consensus 607 ~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 607 RQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred cccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 11 123567888888888888888888887777665 334444444444557888888888877753
No 302
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.39 E-value=8.4e-05 Score=82.77 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=91.4
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
..+||.+++... +....+++...+.++..+.-.++..|.... .. ..+ +++|.+.+++|..++ +..+
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~-~~--------~~~-~~~v~~~~~~p~~~l---l~~~ 305 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL-GA--------EDL-PDNVRVVDFVPHDWL---LPRC 305 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc-cc--------cCC-CCceEEeCCCCHHHH---hhhh
Confidence 346777777653 344556666666666665444555665432 11 244 588999999876555 4669
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+|+ ..+|..|+.||+++|+|+|..+-..- .-..+..+...|..- .+.. +.++..+.+.++.+++ .+++.+
T Consensus 306 d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~-~~~~~~ 379 (401)
T cd03784 306 AAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPP-SRRRAA 379 (401)
T ss_pred heee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHH-HHHHHH
Confidence 9999 56668999999999999998865422 222345566667655 4432 6788888888888754 444444
Q ss_pred HHHHh
Q 002431 868 NKLKS 872 (922)
Q Consensus 868 ~~~~~ 872 (922)
+..++
T Consensus 380 ~~~~~ 384 (401)
T cd03784 380 ALLRR 384 (401)
T ss_pred HHHHH
Confidence 44433
No 303
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=1.4e-05 Score=83.42 Aligned_cols=305 Identities=12% Similarity=0.020 Sum_probs=173.9
Q ss_pred hhhhHHhhcCCCCCeEEEEEecC-CCCChH-HHHHHHhccCceEECCCCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhh
Q 002431 553 HLMGSVFGMHNKENVEVFCYALS-PNDGTE-WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEI 630 (922)
Q Consensus 553 ~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~ 630 (922)
..+.+|++.+-+..-++.+..+. ...+.+ ..+.+...+ .+..++--....+.+.++..++|++|-..+-.-+|.+.-
T Consensus 63 ~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v-~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e 141 (419)
T COG1519 63 LAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSV-IHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINE 141 (419)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCe-EEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHH
Confidence 56778877776553333332222 222221 122222222 233333223567888999999999998887777777777
Q ss_pred hhcCCCceEEec--------cccC-----CCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccCCC
Q 002431 631 FAMQPAPIQVSY--------MGFP-----GTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 631 ~~~~~apvq~~~--------~g~~-----~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
..++.+|+.+.- -+|- ...-...+|.+++ -++. ..|+...|--.-+.+..+=...-.++
T Consensus 142 ~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~a-----Qse~---D~~Rf~~LGa~~v~v~GNlKfd~~~~ 213 (419)
T COG1519 142 LKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILA-----QSEE---DAQRFRSLGAKPVVVTGNLKFDIEPP 213 (419)
T ss_pred HHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeee-----cCHH---HHHHHHhcCCcceEEecceeecCCCC
Confidence 777889987641 1110 0111233444444 1111 12333333221111111110000001
Q ss_pred CCC----CCCcCCCCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCC--
Q 002431 698 PNC----QPKRSDYGLPEDKFIFACFNQLYKMDPE-IFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD-- 770 (922)
Q Consensus 698 ~~~----~~~r~~~~l~~~~~~~~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-- 770 (922)
+.. ...|..++.+...+++++- ..+-++ .++++.+++++.||..|++|--.|.--..+.+.+++.|+...
T Consensus 214 ~~~~~~~~~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~r 290 (419)
T COG1519 214 PQLAAELAALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRR 290 (419)
T ss_pred hhhHHHHHHHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEee
Confidence 111 1267777776443444443 556555 899999999999999999997777645678888888877411
Q ss_pred ----------ceEEcCCCCcHHHHHhccCCcEEecC--CCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCC
Q 002431 771 ----------QIIFTDVAMKQEHIRRSSLADLFLDT--PLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG 838 (922)
Q Consensus 771 ----------rv~f~~~~~~~~~~~~~~~~dv~l~~--~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~ 838 (922)
.|.+... --+...+|..+||+.-- +--.||--.+|+.++|+|||+=+-..--+.....++++=|.
T Consensus 291 S~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~- 367 (419)
T COG1519 291 SQGDPPFSDTDVLLGDT--MGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAG- 367 (419)
T ss_pred cCCCCCCCCCcEEEEec--HhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCe-
Confidence 2222211 24677789999998644 33378888999999999999866554444444444433232
Q ss_pred CccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 839 EEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 839 ~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
++++|.+......-.|..|++.|.++++++.+.+
T Consensus 368 --~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 368 --LQVEDADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred --EEECCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6677755544444455557999999888776654
No 304
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=4.9e-05 Score=68.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 297 (922)
++....-..+.+...|.....+.++..+.+.|++.+|...|++++ +...++...+..+++..+..+++..|...+++..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 333333344444444554455555555555555555555555555 3444445455555555555555555555555555
Q ss_pred hhCCC--ChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 298 SLQPS--HPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 298 ~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
+.+|. .++....++..+...|++.+|...|+.++..
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 54443 2333444444444444444444444444433
No 305
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.37 E-value=9.8e-06 Score=70.77 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHANLA 413 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 413 (922)
+.+.++.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34455555555566666666666655543322 335555666666666666666666666655555 445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 002431 414 SAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al 433 (922)
.++...|+.++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666555544
No 306
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.37 E-value=6.1e-06 Score=90.18 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHH
Q 002431 727 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG 805 (922)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~ 805 (922)
+..++++.++.+++|++.|-| |.+..-...|.+. .+. ++-+.|.|..+ .+.-.+|+.||++||++..+| +.++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence 899999999999999999998 6554434677777 555 46678888654 345577999999999999999 9999
Q ss_pred HHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002431 806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKLKS 872 (922)
Q Consensus 806 ~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~ 872 (922)
.||+..|+|||+........... .++.++ ..++++++++++.+++|++..+..-.+-++
T Consensus 365 ~eA~~~G~pI~afd~t~~~~~~i--------~~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 365 RRAFEYNLLILGFEETAHNRDFI--------ASENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred HHHHHcCCcEEEEecccCCcccc--------cCCceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999877543322211 012122 368999999999999999765554444333
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=4.2e-06 Score=76.56 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=81.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC-----chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 311 GNIYMEWNMLPAAASYYKATLAVTTGL-----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 311 a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
|.-++..|+|++|..-|..++...|.. +..|.+.|.++.++++++.|+....++++++|.+..++..++.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 444555556666666666666555543 234778889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 386 GRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
..+++|+..|++.++.+|...++.-..+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999999998665544333
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.35 E-value=0.0083 Score=65.47 Aligned_cols=394 Identities=11% Similarity=0.008 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 002431 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW-KEKGDIDLAIRYYLVAI 94 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 94 (922)
+.+...|...+...|.....|...|..-.+.|..+.+.+.|++.+..-|.....|...-... ...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55667788888889998899999999999999999999999999999998888777654433 35678888888999998
Q ss_pred hcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhh-
Q 002431 95 ELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ------GLVQEAYSCYLEALRI- 164 (922)
Q Consensus 95 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~- 164 (922)
..... ....|-........++++..-..+|++.++.-......++..=.-+.++ ...+++.+.-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 86543 3456777777778889999999999999876433322222221111111 1122222211111100
Q ss_pred -CCCc---HHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC
Q 002431 165 -QPTF---AIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RP 234 (922)
Q Consensus 165 -~p~~---~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p 234 (922)
.+.. ...+..-+ .+--..+..+++...+.+. ....-.++.......+.+..++..+.. .|
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 0000 00000000 0000001111111111111 111112333334445555556555542 22
Q ss_pred C----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHh
Q 002431 235 N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTN 309 (922)
Q Consensus 235 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 309 (922)
. ...|..........|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+. .|..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 2 4567777778888999999999999998777777889999999999999999999988888886 4666777777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHH---HHHHHHccCCCC----HHHHHHHHHHH
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS---CYNEVLRIDPLA----ADGLVNRGNTY 382 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~----~~~~~~l~~~~ 382 (922)
-+......|++..|..++++..+..|+...+-...+....++|+.+.+.. ++.....- ..+ ...+...++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchhHHHHHHHHHHH
Confidence 88888888999999999999998889888888888888889999988884 33333221 122 22333444433
Q ss_pred -HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 383 -~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
.-.++.+.|...+.++++..|.+...+..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 34588999999999999999999888888877766654
No 309
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.34 E-value=9.6e-07 Score=74.57 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=68.8
Q ss_pred EEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
|+|.|...+| +...+|+|++|+|||+-....+.. +-.-|... +.+.|++++++++..+.+||+.++.++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~------~~~~~~~~-~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLRE------IFEDGEHI-ITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHH------HcCCCCeE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4677766677 889999999999999754321111 11114344 566799999999999999999999999999
Q ss_pred HhhcccCCCCChHHHHHHHH
Q 002431 871 KSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~e 890 (922)
++.+. ..++.+..++++.
T Consensus 74 ~~~v~--~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVL--KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHH--HhCCHHHHHHHHH
Confidence 99884 3589888887764
No 310
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=2.7e-06 Score=68.26 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=31.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (922)
+|.+.+++++|+++++++++.+|+++..+..+|.++..+|++++|...++++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 44445555555555555555555555555555555555555555555555555555544433
No 311
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.30 E-value=3.8e-06 Score=67.36 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYG 71 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 71 (922)
...+.+.++|++|++.+++++..+|.++..+..+|.++...|++++|++.|+++++..|++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345555666666666666666666666666666666666666666666666666666665554443
No 312
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=1.9e-05 Score=69.97 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA---DAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 105 (922)
.+..++..|...++.|+|++|++.|+.+....|. ...+.+.++.+|++.+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4667788888888888888888888888877765 357788888888888888888888888888877754 3666
Q ss_pred HHHHHHHHcCC
Q 002431 106 NLASAYMRKGR 116 (922)
Q Consensus 106 ~la~~~~~~g~ 116 (922)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 67766666544
No 313
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.27 E-value=0.00015 Score=77.14 Aligned_cols=108 Identities=27% Similarity=0.391 Sum_probs=95.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+.-|......|+...|++++..++...|... ..+.+++.++.+.|...+|-..+.+++.+....+-.++.+|.+|..+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 3345555678999999999999999988654 468899999999999999999999999999888899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
+.+.|++.|++++++.|+++..-..+...
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999887766544
No 314
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.26 E-value=2.1e-05 Score=85.16 Aligned_cols=297 Identities=11% Similarity=0.040 Sum_probs=154.1
Q ss_pred eeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHH---HHHHHhc-c----CceEECCC---CC-----
Q 002431 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEW---RQRTQSE-A----EHFVDVSA---MS----- 600 (922)
Q Consensus 538 rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~---~~~~~~~-~----~~~~~~~~---~~----- 600 (922)
||.++.+ .-|-.--+.++++.+.+. .||+.+..++..-+..+ ...+... + +....+.+ -+
T Consensus 2 ki~~v~G---tRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 2 KICVVTG---TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred eEEEEEe---cChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 5666664 345555677888888763 69999999887654322 2223322 2 12222321 11
Q ss_pred ---HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhh------cCCCceEEeccccCCCCCC-CcccE----EEecCccCCc
Q 002431 601 ---SDMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGA-SYIDY----LVTDEFVSPL 666 (922)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~~~apvq~~~~g~~~t~g~-~~~d~----~~~d~~~~~~ 666 (922)
...+.+.+.+.++|+++ .+|.+...++ ..--||.=..-|- -|.|. +.+.. .+++.+++|.
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vl-----v~GD~~~~la~alaA~~~~IPv~HveaG~-rs~~~~eE~~r~~i~~la~l~f~~t 152 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVV-----VLGDRFEMLAAAIAAALLNIPIAHIHGGE-VTEGAIDESIRHAITKLSHLHFVAT 152 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEE-----EeCCchHHHHHHHHHHHhCCcEEEEECCc-cCCCCchHHHHHHHHHHHhhccCCC
Confidence 25678889999999994 4554422221 2234765222221 11221 11112 2345555665
Q ss_pred CccC-CC------ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCC-CcEEEEecCCCC--CCC--HHHHHHHH
Q 002431 667 RYAH-IY------SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE-DKFIFACFNQLY--KMD--PEIFNTWC 734 (922)
Q Consensus 667 ~~~~-~~------~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~-~~~~~~~~~~~~--K~~--~~~~~~~~ 734 (922)
+... .. .++++..-+..+.. .............+++|++. +.+++..+.+.. |.. +.+-.+..
T Consensus 153 ~~~~~~L~~eg~~~~~i~~tG~~~iD~-----l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 153 EEYRQRVIQMGEDPDRVFNVGSPGLDN-----ILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCcHHHH-----HHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 4311 11 12232222111100 00000111223567788874 356666777543 332 33444444
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLP 814 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~P 814 (922)
.+.+...+..++.-..++. ...+++.+.+..-..++|.+.+.++..+++.+++.+|+++ .+++....||.++|+|
T Consensus 228 ~L~~~~~~~~vi~P~~~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~P 302 (365)
T TIGR03568 228 ALDELNKNYIFTYPNADAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVP 302 (365)
T ss_pred HHHHhccCCEEEEeCCCCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCC
Confidence 4333322333322222232 3333333333321136899999999999999999999999 3333344899999999
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
||++.. ...+|.. |-+-.+|..++++.++.+.++ .+++.
T Consensus 303 vv~l~~-R~e~~~~-------g~nvl~vg~~~~~I~~a~~~~-~~~~~ 341 (365)
T TIGR03568 303 TINIGT-RQKGRLR-------ADSVIDVDPDKEEIVKAIEKL-LDPAF 341 (365)
T ss_pred EEeecC-Cchhhhh-------cCeEEEeCCCHHHHHHHHHHH-hChHH
Confidence 998763 3333332 333312556889999888884 45543
No 315
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=8.9e-05 Score=78.83 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChh
Q 002431 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 803 (922)
Q Consensus 724 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~ 803 (922)
+++..+-+++..+.+ +..++... |....+.++..-.+.|+ +.+.++ ..+...+|+.+|+++ .-.|++
T Consensus 197 ~ln~~v~~~~~~l~~---~~~v~~~~-G~~~~~~~~~~~~~~~~----~~v~~f--~~dm~~~~~~ADLvI---sRaGa~ 263 (357)
T COG0707 197 ALNDLVPEALAKLAN---RIQVIHQT-GKNDLEELKSAYNELGV----VRVLPF--IDDMAALLAAADLVI---SRAGAL 263 (357)
T ss_pred HHHHHHHHHHHHhhh---CeEEEEEc-CcchHHHHHHHHhhcCc----EEEeeH--HhhHHHHHHhccEEE---eCCccc
Confidence 445444444444332 34444333 32225677777777776 677776 345777799999998 357899
Q ss_pred HHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 804 TGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 804 t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
|+.|.+++|+|+|-.+-+.. ....-+..|...|..- ++.+ +++.+++.+.++.++++.+++|+++.++..
T Consensus 264 Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 264 TIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999998876655 4555677787778765 4432 477999999999999999999999998864
No 316
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.23 E-value=8.1e-06 Score=87.77 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=91.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
++++.++++.|.. . + ....|+.+|+++|+|+. .+ +. .++|.|.|+++.++....|+. |+.
T Consensus 170 ~~i~yaG~l~k~~-~-l------~~~~~~~~l~i~G~g~~-~~---------~~-~~~V~f~G~~~~eel~~~l~~-~~g 229 (333)
T PRK09814 170 KKINFAGNLEKSP-F-L------KNWSQGIKLTVFGPNPE-DL---------EN-SANISYKGWFDPEELPNELSK-GFG 229 (333)
T ss_pred ceEEEecChhhch-H-H------HhcCCCCeEEEECCCcc-cc---------cc-CCCeEEecCCCHHHHHHHHhc-CcC
Confidence 4566667776643 1 1 11357889999998875 22 34 479999999999999888876 544
Q ss_pred ecCC------------CCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002431 794 LDTP------------LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 794 l~~~------------~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~ 861 (922)
|-+. .++.+.-+.++|++|+|||+......+.-| .. +-.+ +++++.++..+++..+ +++
T Consensus 230 Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V-----~~-~~~G-~~v~~~~el~~~l~~~--~~~ 300 (333)
T PRK09814 230 LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFI-----VE-NGLG-FVVDSLEELPEIIDNI--TEE 300 (333)
T ss_pred eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHH-----Hh-CCce-EEeCCHHHHHHHHHhc--CHH
Confidence 3221 355677789999999999986654444333 33 3334 6667889988888886 467
Q ss_pred HHHHHHHHHHhhc
Q 002431 862 KLQALTNKLKSVR 874 (922)
Q Consensus 862 ~~~~~~~~~~~~~ 874 (922)
.+.+|+++.++..
T Consensus 301 ~~~~m~~n~~~~~ 313 (333)
T PRK09814 301 EYQEMVENVKKIS 313 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887753
No 317
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0014 Score=63.27 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=135.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHH
Q 002431 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 255 (922)
+.+....|+..+.+.-+..... ....+..........+..++.+++-+. ...+.+..++.-.|+|.-.
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~-------~V~~ii~~~e~~~~~ESsv~lW~KRl~-----~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKT-------VVSKILANLEQGLAEESSIRLWRKRLG-----RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHH-----HHHHHHHHHHhcchhhhhh
Confidence 4444555666655554444322 111222223333333555666655443 3566777888888889999
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 256 ILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 256 ~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
...+.+.++.+ |..+.....+|.+..+.|+.+.|..+|+..-+.. ..+..+..+.+.++.-.+++.+|...|.
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 99999998776 6677778889999999999999999998654332 2234567778888889999999999999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 329 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
+.+..++.++.+.++.+.|+.-.|+..+|++.++.+++..|..
T Consensus 277 ~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999998864
No 318
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.18 E-value=6.4e-05 Score=83.27 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=108.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+||.+++......+.+++...+.+...+-..++..|.+.. ...+. .+ +++|.+.+++|..++ +..+|
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~~~------~~-~~~v~~~~~~p~~~l---l~~~~ 293 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PADLG------EL-PPNVEVRQWVPQLEI---LKKAD 293 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhHhc------cC-CCCeEEeCCCCHHHH---HhhCC
Confidence 347888888876666667776666676676545555565432 22221 24 578999999886544 56799
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+++ ..+|..|+.|||++|+|+|+.+...-.. .-+..+...|... .+. -+.+++.+++.+++.|++.++..++
T Consensus 294 ~~I---~hgG~~t~~Eal~~G~P~v~~p~~~dq~-~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 368 (392)
T TIGR01426 294 AFI---THGGMNSTMEALFNGVPMVAVPQGADQP-MTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRK 368 (392)
T ss_pred EEE---ECCCchHHHHHHHhCCCEEecCCcccHH-HHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998 3566778999999999999987553333 3345566677765 443 2578899999999999987666533
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+++.+. ..-..+..++.+++..
T Consensus 369 -l~~~~~--~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 369 -MRAEIR--EAGGARRAADEIEGFL 390 (392)
T ss_pred -HHHHHH--HcCCHHHHHHHHHHhh
Confidence 333332 2346677777777654
No 319
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.15 E-value=5.9e-05 Score=64.02 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=80.7
Q ss_pred HhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHH
Q 002431 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYK 383 (922)
Q Consensus 308 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~ 383 (922)
-.-|..+...|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|+.-+++++++..+. -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888888888999989999999999999998875433 347888999999
Q ss_pred HhCCHHHHHHHHHHHHhhCCC
Q 002431 384 EIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|+-+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 999999999999998887654
No 320
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.15 E-value=9.5e-06 Score=85.65 Aligned_cols=69 Identities=28% Similarity=0.261 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA---HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
.+|+++..++++|.+|.++|++++|+..|+++++++|++.++ |+++|.+|..+|++++|++.+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888888888888888888888888888888888888754 888888888888888888888888887
No 321
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.14 E-value=9.7e-05 Score=76.76 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=120.3
Q ss_pred HhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-----HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 558 VFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----SDMIAKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 558 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
|.+.+....+++.+++..... .+.+.++..+...+.+++.+ ..++.+.|++.++|++|--...+...-...+.
T Consensus 23 LA~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k 100 (279)
T TIGR03590 23 LARALHAQGAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIK 100 (279)
T ss_pred HHHHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH
Confidence 445554456899888865432 34566777777776665532 34688999999999998554433221111111
Q ss_pred cCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecC-CccccCCC--ccccccCCCCCCCCCcCCCCC
Q 002431 633 MQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDY--KQKNMDVLDPNCQPKRSDYGL 709 (922)
Q Consensus 633 ~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp-~~~~~~~~--~~~~~~~~~~~~~~~r~~~~l 709 (922)
...|..+. +.-.+..+. ..|+++-.... . ... .|.+. +| ++.+...+ ....+.+........+.+
T Consensus 101 -~~~~~l~~-iDD~~~~~~-~~D~vin~~~~-~-~~~-~y~~~---~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~--- 168 (279)
T TIGR03590 101 -EFGRKILV-IDDLADRPH-DCDLLLDQNLG-A-DAS-DYQGL---VPANCRLLLGPSYALLREEFYQLATANKRRK--- 168 (279)
T ss_pred -HhCCeEEE-EecCCCCCc-CCCEEEeCCCC-c-CHh-Hhccc---CcCCCeEEecchHHhhhHHHHHhhHhhhccc---
Confidence 12333332 222111111 45666543221 1 100 11110 22 11111111 000001111100111111
Q ss_pred CCCcEEEEecCC--CCCCCHHHHHHHHHHHhhCCCe-EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 710 PEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 710 ~~~~~~~~~~~~--~~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
+...++.+++. ..+.+..++++..++. ++. ..+++|.+....+++++..... .+|.+.+.+ .+...+
T Consensus 169 -~~~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~--~~m~~l 238 (279)
T TIGR03590 169 -PLRRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----PNIILFIDV--ENMAEL 238 (279)
T ss_pred -ccCeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----CCEEEEeCH--HHHHHH
Confidence 11234555553 3455667776665432 232 3346676533366777776542 478888773 466677
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
+..+|+++. .||+|+.|++++|+|+|+.+
T Consensus 239 m~~aDl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 239 MNEADLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHCCEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 899999996 46799999999999999764
No 322
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.02 Score=60.87 Aligned_cols=426 Identities=13% Similarity=0.088 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002431 18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIEL 96 (922)
Q Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 96 (922)
-..+|+.+....+.+...|........+.+.+.+-.+.|.+++..+|+++..|..-|.-.+..+. .+.|...|.+.+..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34567777777777778887777766667778888888888888888888888887777766665 78888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------------------CCHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----------------------GLVQE 153 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----------------------g~~~~ 153 (922)
+|+++..|...-..-..- -+=...-.+.+..+..+.+.-...+...... ....+
T Consensus 170 npdsp~Lw~eyfrmEL~~---~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ke 246 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRMELMY---AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKE 246 (568)
T ss_pred CCCChHHHHHHHHHHHHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHH
Confidence 888877765443332110 0000000111111111110000000000000 00000
Q ss_pred -HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 154 -AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 154 -A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
-...++-.....|.++..|..++.-... .+.+..- .+. .+......-.-+-+....+|+.+++.
T Consensus 247 l~k~i~d~~~~~~~~np~~~~~laqr~l~---------i~~~tdl-~~~-----~~~~~~~~~~~k~s~~~~v~ee~v~~ 311 (568)
T KOG2396|consen 247 LQKNIIDDLQSKAPDNPLLWDDLAQRELE---------ILSQTDL-QHT-----DNQAKAVEVGSKESRCCAVYEEAVKT 311 (568)
T ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHH---------HHHHhhc-cch-----hhhhhchhcchhHHHHHHHHHHHHHH
Confidence 0001111112244444444444332111 0000000 000 00001111111122334566666655
Q ss_pred CCChhHHHhHHHHHHHc-----C-ChHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCC
Q 002431 233 RPNAIAFGNLASTYYER-----G-QADMAILYYKQAI---GCDPRFLEAYNNLGNALKDVGRVDEA-IQCYNQCLSLQPS 302 (922)
Q Consensus 233 ~p~~~~~~~l~~~~~~~-----g-~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~ 302 (922)
-+....|......+... | ....-...++++. ...+....-|..+..++.......++ ....... ..+
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~---f~~ 388 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL---FRD 388 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH---hcc
Confidence 55533333332222221 1 2233344444444 23455555666666666655543332 2222222 334
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHH---HHhcCCCCc--hhhhhHHHHHHHcCC-HHHHHH--HHHHHHcc-CCCCHH
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKA---TLAVTTGLS--APFNNLAVIYKQQGN-YADAIS--CYNEVLRI-DPLAAD 373 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~---a~~~~~~~~--~~~~~la~~~~~~g~-~~~A~~--~~~~al~~-~p~~~~ 373 (922)
+...|...-........ .+.-.|.+ .++..+... ..|.... .++ ...... .+..+... .++...
T Consensus 389 s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence 45555444444332211 11111111 111111111 1111111 222 222211 11111111 344444
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
.-..+-..+.+.|-+.+|...|.+...+-|-....+..+.+.-..+ -+...+..+|+.++...-.+++.|.+.+..-.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 5555667778888889999999998888888777776666654332 24788899999999887789999999888888
Q ss_pred ccCChhhHhHHHHHHHHHHH
Q 002431 452 CVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 452 ~~~~~~~a~~~~~~~~~~~~ 471 (922)
..|.-+.+..++.++.+.++
T Consensus 542 ~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred cCCCcccccHHHHHHHHhhC
Confidence 88888888888888776443
No 323
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.12 E-value=0.018 Score=60.17 Aligned_cols=427 Identities=12% Similarity=0.044 Sum_probs=230.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++++.+.+-.+|.+++-.+.++++....|--+.+|......-...+++.....+|.+++...-+ .+.|......-.+.+
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl~YIRr~n 123 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYLEYIRRVN 123 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHHHHHHhhC
Confidence 5788889999999999999999999888877888877776677778999999999998875433 344433322222221
Q ss_pred ---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 002431 82 ---------DIDLAIRYYLVAIELRPNFADAWSNLASAYM---------RKGRLNEAAQCCRQALALNPLLVD-AHSNLG 142 (922)
Q Consensus 82 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la 142 (922)
..-+|.+..-...-.+|.....|...+..+. ++.+.+.-...|.+++..--.+.+ .|...-
T Consensus 124 ~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~ 203 (660)
T COG5107 124 NLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYE 203 (660)
T ss_pred cccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHH
Confidence 1223333332333346766667766665543 234455666777777765333322 121111
Q ss_pred HHHH---------HcC----CHHHHHHHHHHHHhh-------CCCcHH-----------HHHHHHHHHHHcC-----C-H
Q 002431 143 NLMK---------AQG----LVQEAYSCYLEALRI-------QPTFAI-----------AWSNLAGLFMESG-----D-L 185 (922)
Q Consensus 143 ~~~~---------~~g----~~~~A~~~~~~al~~-------~p~~~~-----------~~~~la~~~~~~g-----~-~ 185 (922)
..-. -.| -+-.|...+++...+ +|-+.. -|.+....-...| + .
T Consensus 204 ~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~ 283 (660)
T COG5107 204 NFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPH 283 (660)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcH
Confidence 1111 111 134455555554433 121111 1222222221111 1 1
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 186 -NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 186 -~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
..-.-.+++++...+-.+++|+.....+...++-+.|+...+......|. ....++..|...++-+....+|+++..
T Consensus 284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 11222344455555555666666666666666666666666666555554 333444555555555544455554432
Q ss_pred cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhh
Q 002431 265 CDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341 (922)
Q Consensus 265 ~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 341 (922)
.- ..-+..+..-.. .|+++...+++-+-.. ...-++..+...-.+..-.+.|..+|-++-+..-....+|
T Consensus 362 ~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy 434 (660)
T COG5107 362 DL----KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY 434 (660)
T ss_pred HH----HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee
Confidence 00 000001110000 1222222222111111 1223344444444455566777777777766542223333
Q ss_pred hhHHH-HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHh
Q 002431 342 NNLAV-IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKD 418 (922)
Q Consensus 342 ~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 418 (922)
..-|. -+...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-... ..+|..+...-.+
T Consensus 435 i~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 435 IYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred eeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh
Confidence 22222 24467788888888888888888887777777777778888888888888777643222 4456666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 002431 419 SGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~ 438 (922)
-|+...+..+=+++.+..|.
T Consensus 515 ~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 515 VGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hcchHHHHhHHHHHHHHcCc
Confidence 67777777666666666665
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0012 Score=63.12 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=99.8
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
..|...+.+|...+++++|...+.++.+...++. .++-..+....+...+.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 3444445555556666666666666653332221 123333444444445555555555543
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHH
Q 002431 311 GNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKE 384 (922)
Q Consensus 311 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 384 (922)
..|.+.|..+.|...++++-+. .+..+.++|+++|++++.+-..+ .+.+-..+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 3445555555555555444321 23345566666666655542211 2234445566666
Q ss_pred hCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHhhcccC
Q 002431 385 IGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL----RPDFPEATCNLLHTLQCVC 454 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~ 454 (922)
..++++|...+.+-... .++....+.....+|.-..++..|..+|+..-+. .|++..+..+|+..|- .|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cC
Confidence 66666666655554322 2333344555555666666777777777766554 3445555666655553 35
Q ss_pred ChhhHhH
Q 002431 455 SWEDRDR 461 (922)
Q Consensus 455 ~~~~a~~ 461 (922)
+.++..+
T Consensus 242 D~E~~~k 248 (308)
T KOG1585|consen 242 DIEEIKK 248 (308)
T ss_pred CHHHHHH
Confidence 5555443
No 325
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.04 E-value=0.00021 Score=76.73 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=73.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+..++++++..... +++ ++++..|+..++++|.+.. . .. .+.|.+.+.. ..++..++..||
T Consensus 192 ~~~iLv~~gg~~~~-----~~~-~~l~~~~~~~~~v~g~~~~-~----------~~-~~ni~~~~~~-~~~~~~~m~~ad 252 (318)
T PF13528_consen 192 EPKILVYFGGGGPG-----DLI-EALKALPDYQFIVFGPNAA-D----------PR-PGNIHVRPFS-TPDFAELMAAAD 252 (318)
T ss_pred CCEEEEEeCCCcHH-----HHH-HHHHhCCCCeEEEEcCCcc-c----------cc-CCCEEEeecC-hHHHHHHHHhCC
Confidence 44567777755433 333 4567788878877765421 1 11 4778888763 256677788899
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCc-chhhhHHHHHHhcCCCC
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGE 839 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~-~~~r~~~~~~~~~g~~~ 839 (922)
+++. -+|.+|+.||+++|+|+|+.+-+. .....-+..+..+|+..
T Consensus 253 ~vIs---~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~ 298 (318)
T PF13528_consen 253 LVIS---KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI 298 (318)
T ss_pred EEEE---CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE
Confidence 9984 356778999999999999998754 44555678888888876
No 326
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=0.00027 Score=73.14 Aligned_cols=163 Identities=19% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCCCCcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceE
Q 002431 699 NCQPKRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 699 ~~~~~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~ 773 (922)
.+...|+++|++.+..+++.+ + |. .+..+-++++..++..+.|+.++++--..+. .++++..+.......-.++
T Consensus 174 ~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (381)
T COG0763 174 DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSLI 252 (381)
T ss_pred cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-HHHHHHHHhhccccCceEE
Confidence 334589999999887666543 2 22 3778899999999888999999988655544 3455555544333111233
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHH--HhcCCCCccccC------
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLC--LATGLGEEMIVN------ 844 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~--~~~g~~~~~i~~------ 844 (922)
+.+ .+-...+..||+.| -..||.++|++.+|+|.|. ..-..+...+.--.+ ...+||- ++++
T Consensus 253 ~~~----~~~~~a~~~aD~al----~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpN-Ii~~~~ivPE 323 (381)
T COG0763 253 LID----GEKRKAFAAADAAL----AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPN-ILAGREIVPE 323 (381)
T ss_pred ecC----chHHHHHHHhhHHH----HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchH-HhcCCccchH
Confidence 333 23344567799988 4568999999999999764 443333222222111 1124544 3332
Q ss_pred ------CHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002431 845 ------SMKEYEERAVSLALDRQKLQALTNKLK 871 (922)
Q Consensus 845 ------~~~~~~~~~~~l~~d~~~~~~~~~~~~ 871 (922)
.++...+....|..|...++++.+..+
T Consensus 324 liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 324 LIQEDCTPENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 577888888888888866666665443
No 327
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.03 E-value=0.00012 Score=78.88 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=85.0
Q ss_pred CcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhhHHHHHHHHHHcCCCCCceEEcCCC
Q 002431 703 KRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~ 778 (922)
.+..+|++++.+++..++-. ..++..+.+++..+. ++.+++. .|.... .+.+. . . ..+...++.
T Consensus 175 ~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~~~-~~~~~----~--~--~~~~~~~f~ 242 (352)
T PRK12446 175 GLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKGNL-DDSLQ----N--K--EGYRQFEYV 242 (352)
T ss_pred HHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCchH-HHHHh----h--c--CCcEEecch
Confidence 45667887766555444322 233333344444432 2244433 343211 22221 1 1 122333542
Q ss_pred CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCc----chhhhHHHHHHhcCCCCccccC---CHHHHHH
Q 002431 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK----MATRVAGSLCLATGLGEEMIVN---SMKEYEE 851 (922)
Q Consensus 779 ~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~----~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~ 851 (922)
.++...+|..+|+++ .-.|++|+.|++++|+|.|..+-.. .....-+..+...|... .+.. +++...+
T Consensus 243 -~~~m~~~~~~adlvI---sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~ 317 (352)
T PRK12446 243 -HGELPDILAITDFVI---SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIK 317 (352)
T ss_pred -hhhHHHHHHhCCEEE---ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHH
Confidence 134556789999998 2457999999999999999886432 23445566777788765 4432 5788888
Q ss_pred HHHHHhcCHHHHH
Q 002431 852 RAVSLALDRQKLQ 864 (922)
Q Consensus 852 ~~~~l~~d~~~~~ 864 (922)
.+.++.+|++.++
T Consensus 318 ~l~~ll~~~~~~~ 330 (352)
T PRK12446 318 HVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHcCHHHHH
Confidence 8899998987764
No 328
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.02 E-value=0.00039 Score=72.97 Aligned_cols=276 Identities=14% Similarity=0.140 Sum_probs=149.8
Q ss_pred CCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C-----------HHHHHHHHHhC
Q 002431 545 DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S-----------SDMIAKLINED 611 (922)
Q Consensus 545 ~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~i~~~ 611 (922)
|..+.+.-+|+.++++.+.+.+.||.+.+-.. +...+-++...-.+..+..- + ..++.+.+++.
T Consensus 6 Di~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~ 82 (335)
T PF04007_consen 6 DITHPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKF 82 (335)
T ss_pred ECCCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666899999999999999999887432 23455566665555544321 1 25688899999
Q ss_pred CCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCcc----CCCcc--ceeecCCcc-c
Q 002431 612 KIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYA----HIYSE--KLVHVPHCY-F 684 (922)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~----~~~~e--~~~~lp~~~-~ 684 (922)
++||+|.. +.. .-..+......|+.+.. -.+.+.....+-+-++|.++.|.... ..+.. ++.+-++.. +
T Consensus 83 ~pDv~is~--~s~-~a~~va~~lgiP~I~f~-D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ 158 (335)
T PF04007_consen 83 KPDVAISF--GSP-EAARVAFGLGIPSIVFN-DTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYKEL 158 (335)
T ss_pred CCCEEEec--CcH-HHHHHHHHhCCCeEEEe-cCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCeeeE
Confidence 99999722 211 11112222335655432 22222222233333667777775432 11222 344344421 1
Q ss_pred cCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHH
Q 002431 685 VNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRA 760 (922)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~ 760 (922)
.+-+ ++ .|. +....++|++++.+++..+... .+.+..++.-..+.++...+..+++...++. . .
T Consensus 159 ayl~----~F--~Pd-~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~----~ 226 (335)
T PF04007_consen 159 AYLH----PF--KPD-PEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-R----E 226 (335)
T ss_pred Eeec----CC--CCC-hhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-h----h
Confidence 1111 11 121 3467789987666666555432 2334444443344455555554444333221 2 2
Q ss_pred HHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHHHhcCCCC
Q 002431 761 YAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLCLATGLGE 839 (922)
Q Consensus 761 ~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~~~~g~~~ 839 (922)
.+++.+ +.+.+. ..+.+.++.-+|+++ .+|||.+.||-.+|+|+|. .+|..+. |. ..|...|+ =
T Consensus 227 ~~~~~~-----~~i~~~--~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l 291 (335)
T PF04007_consen 227 LFEKYG-----VIIPPE--PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-L 291 (335)
T ss_pred HHhccC-----ccccCC--CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-e
Confidence 223222 444443 234444556689988 7889999999999999996 4444221 22 44566677 2
Q ss_pred ccccCCHHHHHHHHHH
Q 002431 840 EMIVNSMKEYEERAVS 855 (922)
Q Consensus 840 ~~i~~~~~~~~~~~~~ 855 (922)
+-..|+++.+..+.+
T Consensus 292 -~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 292 -YHSTDPDEIVEYVRK 306 (335)
T ss_pred -EecCCHHHHHHHHHH
Confidence 456788887774444
No 329
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=9.1e-05 Score=78.43 Aligned_cols=68 Identities=29% Similarity=0.316 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
+|+++..++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677778888888888888888888888888888877643 778888888888888888888887775
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.01 E-value=4.1e-05 Score=69.98 Aligned_cols=92 Identities=26% Similarity=0.319 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC----
Q 002431 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEIG----------RVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---- 420 (922)
Q Consensus 355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 420 (922)
+.|.+.++.....+|.+++.+++-|.++..+. .+++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 33444444444444444444444444443331 2344555556666666666666666666655543
Q ss_pred -------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 421 -------HVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 421 -------~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
.+++|..+|+++.+.+|++......|
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 26788889999999999987555443
No 331
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.00 E-value=8.1e-06 Score=66.39 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----CC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR----PT---MAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
..++.++|.+|..+|++++|+..|++++++. ++ ...++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456666777777777777777777666541 11 2456777777777777777777777777764
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.98 E-value=0.072 Score=62.33 Aligned_cols=422 Identities=15% Similarity=0.084 Sum_probs=218.9
Q ss_pred hhhHHHHHH-HcCCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---c-HHHH
Q 002431 2 HMALAHQMY-KSGSYKQALEHSNSVYERNPLR------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---F-AECY 70 (922)
Q Consensus 2 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~-~~~~ 70 (922)
++.+|..++ ...++++|...+++++.....+ ..+.+.++.++.+.+... |+..+++.++.... . ....
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 678888888 7799999999999997655321 334566788888888777 99999999877544 1 2222
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHHhcC--CCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Q 002431 71 GNM--ANAWKEKGDIDLAIRYYLVAIELR--PNFADA----WSNLASAYMRKGRLNEAAQCCRQALALNP---------- 132 (922)
Q Consensus 71 ~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------- 132 (922)
+.+ ...+...+++..|++.++...... ..++.+ ....+.+....+..+++++.++++.....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 222 333333479999999999988764 343332 23335556667878888888887744321
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh---hCCCcH--------------------------------------
Q 002431 133 LLVDAHSNLGNL--MKAQGLVQEAYSCYLEALR---IQPTFA-------------------------------------- 169 (922)
Q Consensus 133 ~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~---~~p~~~-------------------------------------- 169 (922)
....++..+..+ ....|+++.+...+++.-+ ...+..
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~ 300 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY 300 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence 123344444443 4456776666665544332 111100
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--ChhHHHhHHHHH
Q 002431 170 -IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP--NAIAFGNLASTY 246 (922)
Q Consensus 170 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~ 246 (922)
-.+..-+...+..+..++|.++++++++.-.+.. ..........+..+..-..... ........+...
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~---------~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK---------IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh---------ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0111112223333333344444444433110000 0000000000000000000000 012233455566
Q ss_pred HHcCChHHHHHHHHHHHhc---CCC------cHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCChH---H
Q 002431 247 YERGQADMAILYYKQAIGC---DPR------FLEAYNNLGNALKDVGRVDEAIQCYN--------QCLSLQPSHPQ---A 306 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~---~ 306 (922)
+-.+++..|....+.+.+. .|. .+..++..|..+...|+.+.|...|. .+....+.+.- +
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 6677777777777666533 111 24456677777777788888888876 22233333221 3
Q ss_pred HHhHHHHHHHcCChhH----HHHHHHHHHhcCCCCchhhhhHHH-----HHH--HcCCHHHHHHHHHHHHccC-C-----
Q 002431 307 LTNLGNIYMEWNMLPA----AASYYKATLAVTTGLSAPFNNLAV-----IYK--QQGNYADAISCYNEVLRID-P----- 369 (922)
Q Consensus 307 ~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~la~-----~~~--~~g~~~~A~~~~~~al~~~-p----- 369 (922)
..++..++...+.-.. +...++..-....+.+..++..+. ++. ..-...++...+.++++.. .
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 3344444444443222 444444333322222211211111 111 1122335555555554433 1
Q ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHH-HH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 370 -LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAE-AH-----ANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 370 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~-~~-----~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
--.-++..++..++ .|+..+..+....+...... ... .| ..+...+...|+.++|.....+.-.
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11235566666666 78888877777777665322 222 23 2455668889999999998887654
No 333
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.98 E-value=0.0011 Score=70.25 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------------------
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------------------ 66 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------ 66 (922)
+.....+..+.++-++.-.++++.+|+.+.++..++.-. .....+|.++|+++++.....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 344556677888888888888888888888887776432 233566777777766542210
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 67 -------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 67 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
..+...+|.|..+.|+.++|++.++.+++..|. +..+..++..++...+.|.++..++.+.
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 122233444444444444444444444444332 2234444444444444444444444443
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00097 Score=63.21 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=112.2
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----C-CCcHHHHHHHHHHHHHcCCHH
Q 002431 214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC-----D-PRFLEAYNNLGNALKDVGRVD 287 (922)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~-p~~~~~~~~l~~~~~~~g~~~ 287 (922)
.-.+++++|.++|.++-.. |-..++++.|=..|.++.+. + .+...+|...+.+|.+ .+.+
T Consensus 25 gg~~k~eeAadl~~~Aan~-------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANM-------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CCCcchHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChH
Confidence 3345777887777776443 22233333333333333211 1 1122344444444443 3777
Q ss_pred HHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHc
Q 002431 288 EAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ-GNYADAISCYNEVLR 366 (922)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 366 (922)
+|..++++++++ |...|++..|.++ +..+|.+|... .++++|+.+|+++-+
T Consensus 91 eAv~cL~~aieI--------------yt~~Grf~~aAk~--------------~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 91 EAVNCLEKAIEI--------------YTDMGRFTMAAKH--------------HIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHH--------------HHhhhHHHHHHhh--------------hhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 777777776653 3344444443333 23455555543 677888888887766
Q ss_pred cCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 367 IDPL------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-------EAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 367 ~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
.... ....+...+..-..+++|.+|+..|++.....-++. ..+..-|.|+.-..+.-.+...+++..
T Consensus 143 ~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 143 YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 4321 123556667777788899999999998877654443 234556667777788888999999999
Q ss_pred hcCCCCHHHH
Q 002431 434 LLRPDFPEAT 443 (922)
Q Consensus 434 ~~~p~~~~~~ 443 (922)
+++|...+..
T Consensus 223 ~~dP~F~dsR 232 (288)
T KOG1586|consen 223 ELDPAFTDSR 232 (288)
T ss_pred hcCCcccccH
Confidence 9999887664
No 335
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.95 E-value=0.00031 Score=74.79 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=102.0
Q ss_pred CcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
.++.+ ++++..+++-+ + |. .++.|.++++..++.++.|+.++++...+....+.++......+.. -.+.+..
T Consensus 175 ~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~-~~~~~~~- 251 (373)
T PF02684_consen 175 AREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPD-VSIVIIE- 251 (373)
T ss_pred HHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCC-CeEEEcC-
Confidence 45556 77777766643 2 33 2667999999999999999999988766555344466666666553 2333321
Q ss_pred CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeee-cCCcchhhhHHHHHH--hcCCCCcccc-----------
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL--ATGLGEEMIV----------- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~-~~~~~~~r~~~~~~~--~~g~~~~~i~----------- 843 (922)
.+-...++.+|+.| -..||.|+|+..+|+|.|.. ....+--.++--+++ ..||+- +++
T Consensus 252 ---~~~~~~m~~ad~al----~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~N-iia~~~v~PEliQ~ 323 (373)
T PF02684_consen 252 ---GESYDAMAAADAAL----AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPN-IIAGREVVPELIQE 323 (373)
T ss_pred ---CchHHHHHhCcchh----hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechh-hhcCCCcchhhhcc
Confidence 22344567799988 55689999999999997744 443333333333221 125555 443
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 844 -NSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 844 -~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
-+++...+.+..+..|++.+.......
T Consensus 324 ~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 351 (373)
T PF02684_consen 324 DATPENIAAELLELLENPEKRKKQKELF 351 (373)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 278888899999999987755444433
No 336
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00086 Score=66.82 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc-CCCC---chhhhhHHHHHHHcC
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-TTGL---SAPFNNLAVIYKQQG 352 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g 352 (922)
+.++...|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++.+.. +++. ....-.++..+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566777788888888888888888777777777778888888888888877766 4443 334445677788888
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHhcCCHHHHHHH
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
-|++|.+.-++++++++.+.-+....+.++...|++.++.+...+.-..-... ..-|...+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999888888888888888999998888776654321111 22355677788888999999999
Q ss_pred HHHHH
Q 002431 429 YKQAL 433 (922)
Q Consensus 429 ~~~al 433 (922)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87654
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0041 Score=59.09 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVD------AHSNLGNLMKAQ-GLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF 179 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 179 (922)
+.++.++|..++++++++..+... .+..+|.+|... .++++|+..|+++-+..... ...+...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 344777777777776655432221 233455555544 56666666666665542211 12233444445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
...++|.+|+..|++.....-++.- .++.-|.++....+.-.+...+++..+.+|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 5566666666666666554333321 2334444555545555555566666666664
No 338
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.00022 Score=74.07 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=89.6
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
+|..+.....+.+..+.|..+|+++.+..+....+|...|.+... .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666664444455666666666555 4455557777777777777777777777777777
Q ss_pred hCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 385 IGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
.|+.+.|..+|++++..-|... .+|......-.+.|+.+....+.+++.+..|+...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 7777777777777777655543 57777888888888999889999898888887443
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.099 Score=66.15 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=102.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh-hCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYE-RNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~-~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (922)
.+|.+-++.+.|.+|+-++++-.. ..+.+ ...++.+-.+|...++++.-...... ....| ............
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhh
Confidence 578888999999999999998411 11111 23344455588889998877666553 11222 244555667788
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG-NLMKAQGLVQEAYSC 157 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~ 157 (922)
|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++..+-++.++ .+..+.++++.-...
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999999999998888888888888888888888877766655555555444443 333556666655444
No 340
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.001 Score=63.55 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
..|..-+.++...+++++|..++.++.+-..++. .++-..+.+..+...+.++..+|+++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 3556667788888899999999988886544332 233444444555555555555555543
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHh
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEAHANLASAYKD 418 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 418 (922)
..|.+.|..+.|-..++++-+ ..+..+.++|++.|++++..-..+ .+.+...+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 456666666666666665543 234457788888888887763222 3456677889999
Q ss_pred cCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 419 SGHVEAAIKSYKQALLL------RPDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
..++++|-..+.+-... .++.-..+...+..+....++..+++.++.
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 99999998887765443 344445566666777776777777776665
No 341
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0072 Score=60.53 Aligned_cols=156 Identities=15% Similarity=0.016 Sum_probs=111.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHHHcC
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPTF---AIAWSNLAGLFMESG 183 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 183 (922)
+......|+..+|....+++++..|.+.-++..--..+...|+...-...+++++.. +++. ..+...++-.+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344556778888888888888888887777777777777788887777777777765 4444 444556667777788
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHH
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILY 258 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~ 258 (922)
-+++|.+..++++++++.+.-+...++.++...|+.+++.+...+.-..-.. ...|...+..+.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888888888888888778888888888888888888777655432111 23344556666777777888777
Q ss_pred HHHHH
Q 002431 259 YKQAI 263 (922)
Q Consensus 259 ~~~~l 263 (922)
|..-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76654
No 342
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.91 E-value=0.00039 Score=77.29 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred CCcCCCCCCCCcEEEEec-C-CC---CCCCHHHHHHHH--HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCce-E
Q 002431 702 PKRSDYGLPEDKFIFACF-N-QL---YKMDPEIFNTWC--NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQI-I 773 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~-~-~~---~K~~~~~~~~~~--~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv-~ 773 (922)
..|+++|++++..+++-+ + |. .++.|.++++.. ++. ++.++++...++..++.+++.....++ -.+ +
T Consensus 402 ~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~--~~~~i 476 (608)
T PRK01021 402 SWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA---STHQLLVSSANPKYDHLILEVLQQEGC--LHSHI 476 (608)
T ss_pred HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc---cCeEEEEecCchhhHHHHHHHHhhcCC--CCeEE
Confidence 368889998666666533 3 22 266788888776 322 246666644443334566666654332 012 2
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee-ecCCcchhhhHHHHHHh----cC----------CC
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLCLA----TG----------LG 838 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~-~~~~~~~~r~~~~~~~~----~g----------~~ 838 (922)
+.+. +-...++.||+.| -..||.|+|++.+|+|.|+ .....+.-.++--+++. +| .|
T Consensus 477 i~~~----~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvP 548 (608)
T PRK01021 477 VPSQ----FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFP 548 (608)
T ss_pred ecCc----chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcch
Confidence 2232 1246678899998 5568999999999999775 44433333344333331 22 35
Q ss_pred Cccc----cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 839 EEMI----VNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 839 ~~~i----~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
| ++ .-+++..++. +++..|++.++++++.+++..
T Consensus 549 E-llqgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 549 E-FIGGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred h-hcCCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHH
Confidence 6 77 3468887776 699999998888888776643
No 343
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.90 E-value=0.0017 Score=69.58 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=95.0
Q ss_pred HHHHH-HHcCChhHHHHHHHHHHhcCCCCc-hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCC
Q 002431 310 LGNIY-MEWNMLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGR 387 (922)
Q Consensus 310 la~~~-~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 387 (922)
++-+| ...|+...|..++..++...|... ....+++.++.+.|-...|-.++.+++.++...+-.++.+|..+..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 33344 457999999999999999888644 4578999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 388 VTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 388 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
.+.|++.|+.|++++|++++.-..|-.+-+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999988877766655
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.88 E-value=0.00012 Score=66.91 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHD----------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-- 82 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 82 (922)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+...++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788889999899999999999988888876643 4566777777777778777777777777765542
Q ss_pred ---------HHHHHHHHHHHHhcCCCcH
Q 002431 83 ---------IDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 83 ---------~~~A~~~~~~al~~~p~~~ 101 (922)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4445555555555555543
No 345
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.87 E-value=1.3e-05 Score=65.12 Aligned_cols=64 Identities=33% Similarity=0.628 Sum_probs=44.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHcc----CC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRI----DP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345667777777777777777777777654 11 22457778888888888888888888888764
No 346
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.86 E-value=0.00058 Score=77.11 Aligned_cols=180 Identities=13% Similarity=0.181 Sum_probs=116.9
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 713 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
.+||.+++... +..++.++...+.+++.|.-.+|-.+.+ . .. .++ +++|.+.+++|..+.++ ...
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~-~-~~--------~~~-p~Nv~i~~w~Pq~~lL~-hp~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE-V-EA--------INL-PANVLTQKWFPQRAVLK-HKN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC-c-Cc--------ccC-CCceEEecCCCHHHHhc-CCC
Confidence 47788887654 4567888888888888886444544322 1 11 245 68999999999888773 356
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+++|+ .++|..|+.||+++|||+|.++--.=.-+. +..+...|... .+. -+.++..+++.++.+|+..++..
T Consensus 365 v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~N-a~rv~~~G~G~-~l~~~~~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 365 VKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQFYN-TNKYVELGIGR-ALDTVTVSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred CCEEE---ecCCcccHHHHHHcCCCEEECCCCccHHHH-HHHHHHcCcEE-EeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence 88887 467789999999999999998754322222 34455667654 332 27788999999999998877765
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCCC
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHFKVTENDLD 917 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~ 917 (922)
++-. +.....|.--.++.+..+|.+. |+ ++...|+.....+|.
T Consensus 440 ~~ls-~~~~~~p~~~~~~av~~iE~v~-----r~--~~g~~~lr~~~~~l~ 482 (507)
T PHA03392 440 KELR-HLIRHQPMTPLHKAIWYTEHVI-----RN--KHGNTSLKTKAANVS 482 (507)
T ss_pred HHHH-HHHHhCCCCHHHHHHHHHHHHH-----hC--CCCcccccccccCCC
Confidence 4433 3333344434566666666543 11 124455555555554
No 347
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.001 Score=70.61 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=125.5
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
.+..-..+..+.+.-++.-+++++++|+..++|..++.-. .....+|.++++++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 3444455667788888888889999998888887776532 3356788888888877542211 000000111110
Q ss_pred hHHHHHHHHHHhcCCC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 321 PAAASYYKATLAVTTG--LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
- ........ ...+...++.+..+.|+.++|++.++.+++.+|. +..+..++..++..++.+.++...+.
T Consensus 247 ~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 W-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred h-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 01111111 1334567899999999999999999999988764 45688899999999999999999888
Q ss_pred HHHhh-CCCcHHHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 002431 397 RAITI-RPTMAEAHANLASAYKD-SGH---------------VEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 397 ~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
+--+. -|..+...+.-+..-.+ .++ -..|.+...++++.+|.-+..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 86544 26666666665554433 222 23477899999999998776543
No 348
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00048 Score=71.51 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=51.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...|+.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~ 86 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444444443333333444444444333 22333344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 152 QEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (922)
Q Consensus 152 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (922)
+.|..+|++++..-+... ..|......-.+.|+.+...++.+++.+..|
T Consensus 87 ~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 87 NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 444444444444333222 2333333434444444444444444444333
No 349
>PLN02670 transferase, transferring glycosyl groups
Probab=97.83 E-value=0.00053 Score=75.99 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=107.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh-H---HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-E---MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
..+||.||+......+.-++..+.-+...|...||.+..++.. . ..+-.-+.+. +....+++.++.|..+.+.-
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~H- 355 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILSH- 355 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhcC-
Confidence 4589999998888899999999988999999889988642110 1 1121122221 11122677899998887732
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-------CCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-------NSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-------~~~~~~~~~~~~l~~d~ 860 (922)
..+..|| .+.|-+|++||+++|||+|+++--.= -...+..+...|+.- -+. -+.++..+++.+++.|+
T Consensus 356 ~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~D-Q~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 356 ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNE-QGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred cccceee---ecCCcchHHHHHHcCCCEEeCcchhc-cHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 3344465 46779999999999999999873211 122233444456654 221 25778888888888775
Q ss_pred ---HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 861 ---QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 861 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
+.+++ .+++++.. ...-...+.++.+++.+..
T Consensus 431 ~g~~~r~~-a~~l~~~~--~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 431 AGEEIRDK-AKEMRNLF--GDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred chHHHHHH-HHHHHHHH--hCcchhHHHHHHHHHHHHH
Confidence 23332 22233332 1224556666666665544
No 350
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=97.83 E-value=0.00059 Score=77.88 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=111.3
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHh--hC--CCeEEEEecCChhh-------HHHHHHHHHHcCCCCCceEEc
Q 002431 709 LPEDKFIFACFNQL--YKMDPEIFNTWCNILR--RV--PNSALWLLRFPAAG-------EMRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 709 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~rv~f~ 775 (922)
+.++.+++|.+.|+ +|..+-++....++++ .. .+..+++.|.+... ...+...+++-.+ ++||.|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~ 463 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFL 463 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEE
Confidence 44567888888887 5999999998888875 32 34788888876432 3344554444345 5799997
Q ss_pred CCCCcHHHHHhccCCcEEec-CCC-CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---------
Q 002431 776 DVAMKQEHIRRSSLADLFLD-TPL-CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--------- 843 (922)
Q Consensus 776 ~~~~~~~~~~~~~~~dv~l~-~~~-~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--------- 843 (922)
.--+..---.++..+||+|. |+. +|. ||+-+=||.-|.+.+|.-.....+-.. |-+++.+.
T Consensus 464 ~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 464 ENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDEE 536 (601)
T ss_pred cCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCccccccc
Confidence 63222211224899999999 775 888 999999999999999765422222111 22331222
Q ss_pred ----CCHHHHHHHH---H-HHhcC------H-HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 844 ----NSMKEYEERA---V-SLALD------R-QKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 844 ----~~~~~~~~~~---~-~l~~d------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.|.+++.+++ + .+-.+ | .+.+.+++.++.. .|.||+.+++++..+.|
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~---~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATI---APRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHHh
Confidence 3555555544 2 33322 2 2455555555443 45799999999988876
No 351
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.78 E-value=0.0051 Score=68.76 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC----CchhhhhHHHHHHHcCCHHHHHHH
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG----LSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
+.+.|.++++...+..|+..-..+..|.++...|+.++|++.|++++..... ....++.++.++.-+.++++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 3344444444444444444444444444444444444444444444422111 122356677777777777777777
Q ss_pred HHHHHccCCCC-HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHhh
Q 002431 361 YNEVLRIDPLA-ADGLVNRGNTYKEIGRV-------TDAIQDYIRAITI 401 (922)
Q Consensus 361 ~~~al~~~p~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~ 401 (922)
+.++.+.+.-+ ....+..|.++...|+. ++|.+.|.++-..
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 77777755432 23444557777777777 7777777776654
No 352
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.072 Score=58.70 Aligned_cols=248 Identities=17% Similarity=0.066 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHcCCHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------AECYGNMANAWKEKGDID 84 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~ 84 (922)
..++|+++. +.+| ++..|..++......-.++-|...|-+.-.. +.- ..--...+.+-.--|+++
T Consensus 678 gledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 344454433 3455 6888999998888887888887777654221 110 000123344445568888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+|.+.|-.+-.. -.....+.+.|++-...++++..-.-. ....+++..+|..+.....+++|.++|...-
T Consensus 752 eaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888654321 122455667777776666555421111 1123578888888888888999888887643
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhH
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 242 (922)
. ..+++.+++...+|++-..+ ...-|++...+-.++.++...|.-++|.+.|-+.-. |.. .
T Consensus 824 ~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pka-----A 884 (1189)
T KOG2041|consen 824 D--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PKA-----A 884 (1189)
T ss_pred c--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC--cHH-----H
Confidence 2 23566777777777664433 334577777888888999999998888888765421 221 1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
...+...++|.+|.++.++.. -|.-.......+.-+...++..+|++..+++
T Consensus 885 v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 223445567777777665431 1222222223344445556666666666554
No 353
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.75 E-value=0.00097 Score=73.90 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=93.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
+.+||.||+...+.....++..+.-|+..+...||.+..+. ...+.+-.-+.+. + .+|....++.|..+.+.-
T Consensus 264 ~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~h- 340 (451)
T PLN02410 264 NSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAPQKEVLSH- 340 (451)
T ss_pred CcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCCHHHHhCC-
Confidence 46999999998899988888888888888888899886331 1011123233322 4 477777899998887742
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc-CCCCccc--cCCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT-GLGEEMI--VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~-g~~~~~i--~~~~~~~~~~~~~l~~d~ 860 (922)
..+..|+ .+.|-+|++||+++|||+|+++--.- ...-+..+... |+.- -+ .-+.++..+.+.++..|+
T Consensus 341 ~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~D-Q~~na~~~~~~~~~G~-~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 341 PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSD-QKVNARYLECVWKIGI-QVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred CccCeee---ecCchhHHHHHHHcCCCEEecccccc-CHHHHHHHHHHhCeeE-EeCCcccHHHHHHHHHHHHcCC
Confidence 4455566 46778999999999999999874311 12222222221 3332 11 126778888888888775
No 354
>PLN03004 UDP-glycosyltransferase
Probab=97.70 E-value=0.00078 Score=74.34 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=94.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-------hHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
+.+||.||+......+..++..+.-+...+...||.+..+.. ....+-.-+.+. +....|+..++.|..+.+
T Consensus 270 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 270 KSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHh
Confidence 458999999888889999999999999999989999874311 011121122222 223468888999988877
Q ss_pred HhccCCcE--EecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHH
Q 002431 785 RRSSLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVS 855 (922)
Q Consensus 785 ~~~~~~dv--~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i~------~~~~~~~~~~~~ 855 (922)
...+| || .+.|-+|++||+++|||+|+++--.- -...+..+. ..|+.- -+. -+.++..+.+.+
T Consensus 349 ---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~D-Q~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 349 ---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAE-QRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred ---CCCccceEe---ccCcchHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHH
Confidence 34555 65 46778999999999999999874211 112223332 335543 221 266788888888
Q ss_pred HhcCHHHH
Q 002431 856 LALDRQKL 863 (922)
Q Consensus 856 l~~d~~~~ 863 (922)
++.|+..+
T Consensus 421 vm~~~~~r 428 (451)
T PLN03004 421 IIGECPVR 428 (451)
T ss_pred HhcCHHHH
Confidence 88775543
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.69 E-value=0.068 Score=56.33 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=105.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (922)
......|+...|-.-+..++...|.++......+.+...+|+|+.+...+..+-+.-..-..+...+.......|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567799999999999999999999999999999999999999999988776555444455666677778889999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
...-.-++...-++++.....+-.....|-++++...+++.+.++|...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999888877666777776666677788889999999999998887533
No 356
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.002 Score=63.97 Aligned_cols=161 Identities=18% Similarity=0.131 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAY 111 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 111 (922)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34445555666677777777777777777777777777777777777777777777766543322221 11111112333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
.+.....+.. .+++-+..+|++.++.+.++..+...|+.++|.+.+-..++.+ -.+..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3333332222 2344455677777777777777777777777777777776653 234455666666666666544444
Q ss_pred HHHHH
Q 002431 190 QYYKE 194 (922)
Q Consensus 190 ~~~~~ 194 (922)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44433
No 357
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.66 E-value=0.0013 Score=73.01 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=97.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------------h--HHHHHHHHHHcCCCCCceE
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------------G--EMRLRAYAVAQGVQPDQII 773 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------------~--~~~l~~~~~~~g~~~~rv~ 773 (922)
+.+||.||+........-++..+.-++..|...||.+..+.. . .+.+-+-+.+. +....++
T Consensus 263 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR-~~~rg~v 341 (481)
T PLN02992 263 ESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR-THDRGFV 341 (481)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH-hcCCCEE
Confidence 458999999888889999999999999999999999842110 0 01111112111 2223478
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc-----CCHH
Q 002431 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV-----NSMK 847 (922)
Q Consensus 774 f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~-----~~~~ 847 (922)
+.++.|..+.+.- ..+..|+ .+.|.+|++||+++|||+|+++--.=.-. -+..+ ..+|+.- .+. -+.+
T Consensus 342 v~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~-na~~~~~~~g~gv-~~~~~~~~~~~~ 415 (481)
T PLN02992 342 VPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM-NAALLSDELGIAV-RSDDPKEVISRS 415 (481)
T ss_pred EeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH-HHHHHHHHhCeeE-EecCCCCcccHH
Confidence 8899998887742 2223344 46779999999999999999874321111 12333 3456654 231 2667
Q ss_pred HHHHHHHHHhcCHH------HHHHHHHHHHhhc
Q 002431 848 EYEERAVSLALDRQ------KLQALTNKLKSVR 874 (922)
Q Consensus 848 ~~~~~~~~l~~d~~------~~~~~~~~~~~~~ 874 (922)
+..+++.++..+++ ..+++++..++.+
T Consensus 416 ~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 416 KIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 88888888886632 2344444554443
No 358
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.65 E-value=0.02 Score=62.40 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhH
Q 002431 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIA 238 (922)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 238 (922)
.....|...+.+..+.|+++.|...+.++....+ ..+.+....+..+...|+..+|+..++..++.... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4455667777777777777777777777766431 13556667777777777777777777766652111 000
Q ss_pred HHhHHHHHHH--cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChHHHHhH
Q 002431 239 FGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------GRVDEAIQCYNQCLSLQPSHPQALTNL 310 (922)
Q Consensus 239 ~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (922)
...+...... ........... .......++..+|...... +..+++...|.++.+.+|....++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0000000000 00000000000 0001123455555555555 666777777777777777666666666
Q ss_pred HHHHHHcC-----------------ChhHHHHHHHHHHhcCCC
Q 002431 311 GNIYMEWN-----------------MLPAAASYYKATLAVTTG 336 (922)
Q Consensus 311 a~~~~~~~-----------------~~~~A~~~~~~a~~~~~~ 336 (922)
|..+.+.= -...|+..|-+++...+.
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 65544321 123477788888887776
No 359
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.015 Score=61.26 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
.+-.++.+..-.|++++|.+.+++++...|.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3445556666677777777777777766554
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00042 Score=65.83 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 117 (922)
.-|..++...+|..|+..|.+++..+|..+..|...+.++++..+++.+.....++++++|+.+...+.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34556666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 002431 118 NEAAQCCRQALAL 130 (922)
Q Consensus 118 ~~A~~~~~~~l~~ 130 (922)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 7777777777543
No 361
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.63 E-value=0.0024 Score=71.43 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=89.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
..+||.+|+......+..++....-+...+...||.++.+... ...+-.-+.+. +....++..++.|..+++. ..
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r-~~~~g~~v~~w~PQ~~vL~-h~ 360 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR-VAGRGLVIRGWAPQVAILS-HR 360 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH-hccCCEEecCCCCHHHHhc-CC
Confidence 3588999998878888888888888888888888888743210 11121112111 1134578889999888774 24
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc------cCCHHHHHHHHHHHh-cCHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI------VNSMKEYEERAVSLA-LDRQ 861 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i------~~~~~~~~~~~~~l~-~d~~ 861 (922)
.+++|+ .++|-+|++||+++|||+|+++--.=.-..+.-+...+|+.- -+ .-+.++..+.+.++. .+++
T Consensus 361 ~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 361 AVGAFL---THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CcCeEE---ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHH
Confidence 577777 467789999999999999998742111111111122333332 12 125567666666655 4544
Q ss_pred HH
Q 002431 862 KL 863 (922)
Q Consensus 862 ~~ 863 (922)
.+
T Consensus 437 ~r 438 (477)
T PLN02863 437 ER 438 (477)
T ss_pred HH
Confidence 44
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00045 Score=65.63 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=87.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
..+..++....|..|+..|.+++..+|..+..+...+.|+++..+++.+.....+++++.|+.....+.+|....+...|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002431 84 DLAIRYYLVAIEL 96 (922)
Q Consensus 84 ~~A~~~~~~al~~ 96 (922)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999665
No 363
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.0015 Score=67.97 Aligned_cols=306 Identities=16% Similarity=0.123 Sum_probs=184.1
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCC-eEEEEEecCCCCChHHHHHHHhccCc---eEECCCC----C-------
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEH---FVDVSAM----S------- 600 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~------- 600 (922)
.+||..|++ .-|-..=+.++++.+++.. ||.+++.+++.-+..+-..+.....- -+++.-+ +
T Consensus 3 ~~Kv~~I~G---TRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFG---TRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEe---cCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 467777764 4677778889999998877 99999999987754455444443331 1222222 1
Q ss_pred -HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCC----ceEEeccccCCCCCCCcccE------------EEecCcc
Q 002431 601 -SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPA----PIQVSYMGFPGTTGASYIDY------------LVTDEFV 663 (922)
Q Consensus 601 -~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~a----pvq~~~~g~~~t~g~~~~d~------------~~~d~~~ 663 (922)
...+.+.+.+.+||++ --||.+...|+.-.| -|.|.+.- -|+.+.|- .++|-.+
T Consensus 80 ~i~~~~~vl~~~kPD~V-----lVhGDT~t~lA~alaa~~~~IpV~HvE----AGlRt~~~~~PEE~NR~l~~~~S~~hf 150 (383)
T COG0381 80 IIEGLSKVLEEEKPDLV-----LVHGDTNTTLAGALAAFYLKIPVGHVE----AGLRTGDLYFPEEINRRLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHHHHhhCCCEE-----EEeCCcchHHHHHHHHHHhCCceEEEe----cccccCCCCCcHHHHHHHHHHhhhhhc
Confidence 2457888889999998 455665544442111 22232221 23332222 2556677
Q ss_pred CCcCccCCCccceeecCCccccCCCccccc---cCCCCC--CCCCcCC-CCCCCCcEEEEecCCCC---CCCHHHHHHHH
Q 002431 664 SPLRYAHIYSEKLVHVPHCYFVNDYKQKNM---DVLDPN--CQPKRSD-YGLPEDKFIFACFNQLY---KMDPEIFNTWC 734 (922)
Q Consensus 664 ~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~---~~~~~~--~~~~r~~-~~l~~~~~~~~~~~~~~---K~~~~~~~~~~ 734 (922)
+|.+...-+..+- ..|...+...++.... ...... ....... ++.+++.++..++.|.. +....++.+..
T Consensus 151 apte~ar~nLl~E-G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~ 229 (383)
T COG0381 151 APTEIARKNLLRE-GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALR 229 (383)
T ss_pred CChHHHHHHHHHc-CCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHH
Confidence 7766422111110 1122212111111000 000000 0011111 45555567788887653 77788899999
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHH-HHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYA-VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~-~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~ 813 (922)
+|++..|+..++.--.. +.+++... ..++- .+||.+...+...++..++..+-+.| ...|.--=||-..|+
T Consensus 230 ~i~~~~~~~~viyp~H~---~~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp~lg~ 301 (383)
T COG0381 230 EIAEEYPDVIVIYPVHP---RPRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAPSLGK 301 (383)
T ss_pred HHHHhCCCceEEEeCCC---ChhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHHhcCC
Confidence 99999988777654322 23444433 55565 47899999888999999888886665 333555679999999
Q ss_pred CeeeecCC-cchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 814 PMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 814 Pvv~~~~~-~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
||+++... ..+++|.+ |-.- +|-.+.+..++.+..+.+|++..++|+..
T Consensus 302 Pvl~lR~~TERPE~v~a------gt~~-lvg~~~~~i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 302 PVLVLRDTTERPEGVEA------GTNI-LVGTDEENILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred cEEeeccCCCCccceec------CceE-EeCccHHHHHHHHHHHhhChHHHHHHhcc
Confidence 99988654 33455554 4444 66678899999999999999988877663
No 364
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.014 Score=65.33 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=126.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHH------HHhHHHHHH----HcCChhHHHHH
Q 002431 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQA------LTNLGNIYM----EWNMLPAAASY 326 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~~~~~~A~~~ 326 (922)
.|.-++.+-|. ....+....--.|+-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.++
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 34444444443 22334444444567777777777766522111 111 111111111 34567889999
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 327 YKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 327 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
++...+..|+........|.++...|+.++|++.|++++.....- .-.++.+++++.-+.+|++|...+.+..+.+
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988543222 3378889999999999999999999999976
Q ss_pred CCc-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCC
Q 002431 403 PTM-AEAHANLASAYKDSGHV-------EAAIKSYKQALLLRP 437 (922)
Q Consensus 403 p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p 437 (922)
.-. ....+..|.++...|+. ++|.++|+++-.+..
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 554 34456678888899999 999999999877643
No 365
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00087 Score=67.25 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=101.6
Q ss_pred hCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEE-cCCCCcHHHHHhccCCcEE--ecCCCCCC--hhHHHHHHHcCC
Q 002431 739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLF--LDTPLCNA--HTTGTDILWAGL 813 (922)
Q Consensus 739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~~~dv~--l~~~~~~g--~~t~~eal~~g~ 813 (922)
..|+...+|-|.||. ++...+.+.++.+ .+|.| +++..-+++...+..+|+- |.||..+= ++-++|-.-||+
T Consensus 290 ~lP~llciITGKGPl-kE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcgl 366 (444)
T KOG2941|consen 290 NLPSLLCIITGKGPL-KEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGL 366 (444)
T ss_pred CCCcEEEEEcCCCch-hHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCC
Confidence 367777777888998 8888999999887 56666 5577789999999999965 56655544 889999999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL----DRQKLQALTNKLKSV 873 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~----d~~~~~~~~~~~~~~ 873 (922)
||++..=....+-|- -|.++ ++..|.++..+....|.+ +.+.+.+++.++++.
T Consensus 367 PvcA~~fkcl~ELVk------h~eNG-lvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 367 PVCAVNFKCLDELVK------HGENG-LVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred ceeeecchhHHHHHh------cCCCc-eEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999877655544333 28888 999999999999999998 899999999999885
No 366
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.014 Score=56.74 Aligned_cols=226 Identities=16% Similarity=0.191 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQA 127 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~ 127 (922)
..|+++-+.++..+|.+-.+|...-.++...+ +..+-++++..+++.+|++-++|...-.+....|+.. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 44555556666677776666655555554433 4566667777777777777777776666666666666 666777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCC
Q 002431 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SG-----DLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~l~~~p~ 201 (922)
+..+.++..+|...-.+...-+.++.-+.+..++++.+-.+-.+|+..--+... .| ..+.-+.+..+.+...|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777665555555443221111 11 123345566666777777
Q ss_pred CHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHhhCCC--hhHHHhHHHHHH------HcCChH---HHHHHHHHHH-hcC
Q 002431 202 FPDAYLNLGNVYKA-LG--MPQEAIMCYQRAVQTRPN--AIAFGNLASTYY------ERGQAD---MAILYYKQAI-GCD 266 (922)
Q Consensus 202 ~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~------~~g~~~---~A~~~~~~~l-~~~ 266 (922)
+..+|..|.-++.. .| ...+............|. +..+..+...|. ..+.-+ +|.+.++.+. +.+
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~D 299 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVD 299 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccC
Confidence 77777777666664 33 233444444444322121 334444444441 122222 4666666655 566
Q ss_pred CCcHHHHHH
Q 002431 267 PRFLEAYNN 275 (922)
Q Consensus 267 p~~~~~~~~ 275 (922)
|-....|..
T Consensus 300 piR~nyW~~ 308 (318)
T KOG0530|consen 300 PIRKNYWRH 308 (318)
T ss_pred cHHHHHHHH
Confidence 655544433
No 367
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.58 E-value=0.069 Score=63.77 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQL----H---DYDMCIARNEEALRLEPRFAECYGNMA 74 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 74 (922)
.-.++...+.|++|+..|+++....|.. .++.+..|.....+ | .+++|+..|++. ...|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3456778889999999999999888754 56777777766543 2 467777777764 44566677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002431 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAW 104 (922)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 104 (922)
.+|.+.|++++-++.|.-+++..|+.+..-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 899999999999999999999888876543
No 368
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.58 E-value=0.00016 Score=50.79 Aligned_cols=38 Identities=39% Similarity=0.491 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+..+|..|...|++++|++.|+++++.+|+++.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 34444444444444444444444444444444444433
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0012 Score=63.02 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=82.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHc--------cCCCCH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLR--------IDPLAA----------DGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (922)
+..-|+-+++.|+|++|...|..++. ..|..+ ..+.+++.|+...|+|-++++.....+...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 44455556666666666666665543 234433 368889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
|.+..+++..|.+....=+.++|.+-|.++++++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999998755443
No 370
>PLN02764 glycosyltransferase family protein
Probab=97.57 E-value=0.0015 Score=71.85 Aligned_cols=155 Identities=9% Similarity=0.057 Sum_probs=91.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
++.++|.||+....+.+.-+.-.+.=|...-.-.+|++..+.. ....|-.-+.+. +...-++..++.|..+.+. .
T Consensus 256 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~-h 333 (453)
T PLN02764 256 PDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILS-H 333 (453)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhc-C
Confidence 3558999999887765554444443344444446788764211 011122222222 1112367789999888884 3
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCccc------cCCHHHHHHHHHHHhcCH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMI------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i------~~~~~~~~~~~~~l~~d~ 860 (922)
..++.|| .+.|.+|++||+++|||+|+++--.-. ..-+..+ ..+|+.- -+ .-+.++..+++.+++.+.
T Consensus 334 ~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~DQ-~~na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 334 PSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGDQ-VLNTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred cccCeEE---ecCCchHHHHHHHcCCCEEeCCcccch-HHHHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCC
Confidence 4566676 467799999999999999998753211 1222333 3344432 11 126788888888888764
Q ss_pred -HHHHHHHHHHHh
Q 002431 861 -QKLQALTNKLKS 872 (922)
Q Consensus 861 -~~~~~~~~~~~~ 872 (922)
+..+.+|++.++
T Consensus 409 ~~~g~~~r~~a~~ 421 (453)
T PLN02764 409 SEIGNLVKKNHTK 421 (453)
T ss_pred chhHHHHHHHHHH
Confidence 445555555544
No 371
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.57 E-value=0.00012 Score=77.04 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119 (922)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 119 (922)
+...+.-+.++.|+..|.++++++|+.+..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+....+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34445555556666666666666665555555555556666666666666666666666655566666666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 120 AAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 120 A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
|...|++.....|+++.+...+-.+
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666666666655554444433
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.13 Score=65.05 Aligned_cols=386 Identities=15% Similarity=0.097 Sum_probs=204.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
.++.+-++.+.|..|+-++++- ...+. ....+..+-.+|...++++.-.-.... ...+|+ ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence 6788889999999999999985 22221 123344455588999998887776654 122332 3455666778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHcCCHHHHHHHH
Q 002431 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-GLFMESGDLNRALQYY 192 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 192 (922)
.|++..|..+|+++++.+|+....+...-......+.++..+...+-.....++...-|+.++ .+..+.++++.-.+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999998888888888888889998888877776666565555555543 3345666666655554
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHH-----HHHHHHHHHh-------hCCC-hhHHHhHHHHHHHcCChHHHHHHH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQE-----AIMCYQRAVQ-------TRPN-AIAFGNLASTYYERGQADMAILYY 259 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 259 (922)
. ..+-.+..+.. +|.+.....+-+. .++..+...- ...+ ...|..+...+... +.+...+.+
T Consensus 1542 ~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l 1616 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEEL 1616 (2382)
T ss_pred h---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3 11111111211 3444433322211 1111111100 0000 11111111111110 011111111
Q ss_pred HHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hC----CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002431 260 KQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ----PSHPQALTNLGNIYMEWNMLPAAASYY 327 (922)
Q Consensus 260 ~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~~~~~~A~~~~ 327 (922)
.+ ..++ +.+-|.+....-....+..+-+-.+++..- .+ ..-.+.|...|++....|.++.|...+
T Consensus 1617 ~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 KK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11 1111 011222222111111122233333333221 12 123456777777777777777777776
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC--------H---------HHHHHHHHHHHHhCCH--
Q 002431 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--------A---------DGLVNRGNTYKEIGRV-- 388 (922)
Q Consensus 328 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~---------~~~~~l~~~~~~~g~~-- 388 (922)
-++.+.. -+.++...|..+..+|+-..|+..+++.++.+-.+ + .+.+.++.-....|+.
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 6666555 45566667777777777777777777776542111 1 1233333333344442
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHH------------HhcCCHHH---HHHHHHHHHhcCCCC
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAY------------KDSGHVEA---AIKSYKQALLLRPDF 439 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g~~~~---A~~~~~~al~~~p~~ 439 (922)
++-++.|..+.+..|....-++.+|..| .+.|++.. ++..|.+++..+-.+
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh
Confidence 3345667777777776555555555333 23445544 556666777766544
No 373
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00021 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.++..+|..|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999999875
No 374
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.55 E-value=0.0031 Score=70.99 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------h-HHHHHHHHHHcCCCCCceEEcCCCC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------G-EMRLRAYAVAQGVQPDQIIFTDVAM 779 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~-~~~l~~~~~~~g~~~~rv~f~~~~~ 779 (922)
+.+||.||+......+..++....-++..+.-.+|.++.+.. . .+.+-.-+.+. + .+|+.+.++.|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-T-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-h-ccCceEEeeCC
Confidence 458999999888888888888888888888877888754210 0 01111112111 3 36777789999
Q ss_pred cHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC--cchhhhHHHHHHhcCCCCccc--------------c
Q 002431 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE--KMATRVAGSLCLATGLGEEMI--------------V 843 (922)
Q Consensus 780 ~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~--~~~~r~~~~~~~~~g~~~~~i--------------~ 843 (922)
..+.+. ...+..|| .+.|-+|++||+++|||+|+++-- .+.. ..-++..+|+.- -+ .
T Consensus 352 Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~ 424 (481)
T PLN02554 352 QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLAV-EIRKYWRGDLLAGEMET 424 (481)
T ss_pred HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCceE-EeeccccccccccccCe
Confidence 888773 34556665 467789999999999999998742 2211 112344455542 11 1
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHH
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQA 865 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~ 865 (922)
-+.++..+++.++.. |+..+++
T Consensus 425 ~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 425 VTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred EcHHHHHHHHHHHhcCCHHHHHH
Confidence 266777777777775 6555444
No 375
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.54 E-value=0.00076 Score=77.48 Aligned_cols=163 Identities=14% Similarity=0.253 Sum_probs=93.3
Q ss_pred CCcEEEEecCCCCCC-CHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 711 EDKFIFACFNQLYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
++.+||.+|+...+. ....++.+.+.+++.|...+|-.+.... ..+ ++.|.+..++|..+.++ ...
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------~~l-~~n~~~~~W~PQ~~lL~-hp~ 341 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------ENL-PKNVLIVKWLPQNDLLA-HPR 341 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------CHH-HTTEEEESS--HHHHHT-STT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc-----------ccc-cceEEEeccccchhhhh-ccc
Confidence 346899999987654 4445888888899999977776654211 112 46788899999888885 455
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+++|+ .++|-+|+.||+++|||+|+++--.=--+ -+..+...|... .+. -+.++..+++.++.+|+..++..
T Consensus 342 v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~-na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 342 VKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR-NAARVEEKGVGV-VLDKNDLTEEELRAAIREVLENPSYKENA 416 (500)
T ss_dssp EEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH-HHHHHHHTTSEE-EEGGGC-SHHHHHHHHHHHHHSHHHHHHH
T ss_pred ceeee---eccccchhhhhhhccCCccCCCCcccCCc-cceEEEEEeeEE-EEEecCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 67776 46778999999999999999874311111 234455667754 332 26788999999999998766664
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
++ +++.....|.--.++.+..+|-+
T Consensus 417 ~~-ls~~~~~~p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 417 KR-LSSLFRDRPISPLERAVWWIEYV 441 (500)
T ss_dssp HH-HHHTTT-----------------
T ss_pred HH-HHHHHhcCCCCHHHHHHHHHHHH
Confidence 43 44444444433344445555543
No 376
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.51 E-value=0.003 Score=70.95 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=87.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh----HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
+.+||.+|+......+..++.++.-++..+...||.++.+... ...+-.-+.+ .+ .+|+.+.++.|..+.+. .
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~e-r~-~~rg~v~~w~PQ~~iL~-h 356 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMD-RV-MGRGLVCGWAPQVEILA-H 356 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHH-Hh-ccCeeeeccCCHHHHhc-C
Confidence 4588999988777777778888888888888788887643210 1112111111 13 35667779998888774 3
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC--cchhhhHHHHHHhcCCCCccc---------cCCHHHHHHHHHHH
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE--KMATRVAGSLCLATGLGEEMI---------VNSMKEYEERAVSL 856 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~--~~~~r~~~~~~~~~g~~~~~i---------~~~~~~~~~~~~~l 856 (922)
..++.|| .++|-+|++||+++|||+|+++-- .+.. +.-++..+|..-.+- .-+.++..+.+.++
T Consensus 357 ~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~ 431 (475)
T PLN02167 357 KAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLN--AFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSL 431 (475)
T ss_pred cccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhh--HHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHH
Confidence 4456666 467788999999999999988742 2221 111234445432110 12567777777787
Q ss_pred hcC
Q 002431 857 ALD 859 (922)
Q Consensus 857 ~~d 859 (922)
+.+
T Consensus 432 m~~ 434 (475)
T PLN02167 432 MDG 434 (475)
T ss_pred hcC
Confidence 754
No 377
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.15 Score=56.42 Aligned_cols=175 Identities=20% Similarity=0.183 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (922)
+..|..++......-.++-|...|-+.-....- ...--...+.+-.--|++++|.+.|-.+-+.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-------- 763 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-------- 763 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--------
Confidence 666666666666555555555555443211000 0000112233344456666666666443221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcC
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERG 250 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 250 (922)
-.-..++.+.|++-...++++.--.-.. ....++.++|..+..+..+++|.++|.+.-.. .+.+.+++...
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le 836 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLE 836 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHH
Confidence 1123344555565555554443211111 11236666666666666666666666554221 23344444444
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
++++-..+ ...-|++.+.+-.++..+...|.-++|.+.|-
T Consensus 837 ~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 837 LFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 44433222 22234444455555666666666565555553
No 378
>PLN02207 UDP-glycosyltransferase
Probab=97.49 E-value=0.0035 Score=69.51 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=89.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+||.||+.........++..+.-+...+...||.+..+.. ..+.+-.-+.+. + .+|+...++.|..+.+.- ..+
T Consensus 275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-~-~~~g~i~~W~PQ~~IL~H-~~v 351 (468)
T PLN02207 275 ASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-V-SGRGMICGWSPQVEILAH-KAV 351 (468)
T ss_pred CcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-c-CCCeEEEEeCCHHHHhcc-ccc
Confidence 458999999888999999999999999999988998874221 011111122211 3 467777799998888843 444
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecC--CcchhhhHHHHHHhcCCCCcc----c-----cCCHHHHHHHHHHHhc
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLATGLGEEM----I-----VNSMKEYEERAVSLAL 858 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~--~~~~~r~~~~~~~~~g~~~~~----i-----~~~~~~~~~~~~~l~~ 858 (922)
..|| .+.|-++++||+++|||+|+++- +.+.. ..-+....|+.-.+ . .-+.++..+++.+++.
T Consensus 352 g~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 352 GGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQLN--AFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ceee---ecCccccHHHHHHcCCCEEecCccccchhh--HHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 5565 46778899999999999999873 22221 11112223332100 0 1266777777777775
No 379
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.49 E-value=0.0055 Score=68.72 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+.+||.+|+......+..++...+-++..+...+|.+.... ..+.+. . .+++++.++.|..+.+.- ..+.
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---~~~~~~-----~-~~~~~v~~w~pQ~~iL~h-~~v~ 343 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---SRLKEI-----C-GDMGLVVPWCDQLKVLCH-SSVG 343 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---hhHhHh-----c-cCCEEEeccCCHHHHhcc-Cccc
Confidence 44788888877777788888888888888766666544221 112111 1 367888899998887752 3333
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCccc-------cCCHHHHHHHHHHHhcCH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMI-------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i-------~~~~~~~~~~~~~l~~d~ 860 (922)
.|| .++|.+|++||+++|||+|+++--.-.-.. +..+. .+|+.-.+. .-+.++..+.+.+++.|+
T Consensus 344 ~fv---tHgG~nS~~eal~~GvP~l~~P~~~DQ~~n-a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 344 GFW---THCGWNSTLEAVFAGVPMLTFPLFWDQPLN-SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred eEE---ecCchhHHHHHHHcCCCEEeccccccchhh-HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 465 467799999999999999998743222222 22232 223322111 126778888888888764
No 380
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.49 E-value=0.025 Score=59.72 Aligned_cols=79 Identities=22% Similarity=0.136 Sum_probs=42.6
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCChHHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAIGC----DPRFLEAYNNLGNALKD---VGRVDEAIQCYNQC-LSLQPSHPQALT 308 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~ 308 (922)
.+..++...|....+|+.-+++.+.+-.. .++.......+|.++.+ .|+.++|+..+..+ ....+.+++++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33444445555555565555555554433 23334445555556655 56666666666663 333445566666
Q ss_pred hHHHHHH
Q 002431 309 NLGNIYM 315 (922)
Q Consensus 309 ~la~~~~ 315 (922)
.+|.+|.
T Consensus 222 L~GRIyK 228 (374)
T PF13281_consen 222 LLGRIYK 228 (374)
T ss_pred HHHHHHH
Confidence 6666553
No 381
>PLN02562 UDP-glycosyltransferase
Probab=97.49 E-value=0.0055 Score=68.17 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=93.2
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+.+||.+|+... ...++.++....-++..+.-.+|.+..+. ...+-.-+.+. + .+|+.+.++.|..+.+.- ..+
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~--~~~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW--REGLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--hhhCCHHHHHH-h-ccCEEEEecCCHHHHhCC-Ccc
Confidence 347888998754 67888999999889999987788775321 11121112111 3 478888899998888742 333
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
-.|| .++|-+|++||+++|||+|+++--.-.-..+.-+...+|+.-.+-.-+.++..+.+.++..|++.+++.+
T Consensus 348 ~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~ 421 (448)
T PLN02562 348 GCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLM 421 (448)
T ss_pred ceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555 4677999999999999999886331111111111111343221112367788888888888877665543
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.48 E-value=0.052 Score=62.40 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQL-----HDYDMCIARNEEALRL-----EPRFAECYGNMANAWKEKG--- 81 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 81 (922)
..+|...++.+.+.. +..+...+|.++..- .|.+.|+.+|+.+.+. ...++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 455666666665433 556666666666544 4677777777776551 0113445556666665532
Q ss_pred --CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 002431 82 --DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG---RLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQ 152 (922)
Q Consensus 82 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~ 152 (922)
+++.|..+|.++-+.. ++.+.+.+|.++.... +...|.++|..+.+.. +..+.+.++.++.. ..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHH
Confidence 4555666666655542 2344555555555433 3456666666655433 44555555555543 22455
Q ss_pred HHHHHHHHHHhhC
Q 002431 153 EAYSCYLEALRIQ 165 (922)
Q Consensus 153 ~A~~~~~~al~~~ 165 (922)
.|..++.++.+..
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 5555555555544
No 383
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.48 E-value=0.00012 Score=47.75 Aligned_cols=32 Identities=47% Similarity=0.662 Sum_probs=19.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 384
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.002 Score=61.52 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=64.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh--------hCCCc----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYE--------RNPLR----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 65 (922)
+.|+.+++.|+|.+|...|..++. ..|.+ ...+....+|+...|+|-++++....++...|.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 567788888888888888877652 23433 234455666666666666777766666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (922)
+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 66666666666666666666666666666666653
No 385
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.034 Score=54.08 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-RLNEAAQCCR 125 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 125 (922)
.+|.++..+|+.++..+..+ ..|+++...++.++|.+-.+|...-.++...+ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677777777766655443 45666777778888887777776666655543 5677788888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQGLVQ-EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (922)
++++.+|++..+|...-.+....|+.. .-++..+.++..+..+..+|...-.+....+.++.-+.+..++++.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 888888888888888888888888777 7778888888888888888888888888888888888888888887766666
Q ss_pred HHHHHHHHHHH-cC-----ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH-cC--ChHHHHHHHHHHH-hcCCCcHHHH
Q 002431 205 AYLNLGNVYKA-LG-----MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE-RG--QADMAILYYKQAI-GCDPRFLEAY 273 (922)
Q Consensus 205 ~~~~l~~~~~~-~g-----~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g--~~~~A~~~~~~~l-~~~p~~~~~~ 273 (922)
+|+..-.+... .| ..+.-+.+..+.+...|+ ..+|+.|..++.. .| ...+......... ......+..+
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ll 262 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLL 262 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHH
Confidence 66543322222 11 123345566667777777 6777777777765 33 2333444444443 3333444444
Q ss_pred HHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCCChHHHHhH
Q 002431 274 NNLGNALK------DVGRVD---EAIQCYNQCL-SLQPSHPQALTNL 310 (922)
Q Consensus 274 ~~l~~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~~l 310 (922)
..+...|. +.+.-+ +|.+.++.+- +.+|-....|...
T Consensus 263 a~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 263 AFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 45555541 122223 5666776654 5566555544433
No 386
>PLN00164 glucosyltransferase; Provisional
Probab=97.46 E-value=0.0044 Score=69.55 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=87.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------hHHHHHHHHHHcCCCCCceEEcCCCCcH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
..+||.||+........-++..+.-|+..+.-.||.+..++. ....+-.-+.+. +....+++.++.|..
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHH
Confidence 348899999877777777888888888888878888874321 011121111111 111236777899888
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--------CCHHHHHHHH
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--------NSMKEYEERA 853 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--------~~~~~~~~~~ 853 (922)
+++.- ..+-.|| .+.|-+|++||+++|||+|+++--.=.-..+.-+...+|+.- .+. -+.++..+.+
T Consensus 351 ~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av 425 (480)
T PLN00164 351 EILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAV 425 (480)
T ss_pred HHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHH
Confidence 87742 2233455 467789999999999999998732111111111234455543 221 1567777778
Q ss_pred HHHhcCH
Q 002431 854 VSLALDR 860 (922)
Q Consensus 854 ~~l~~d~ 860 (922)
.++..++
T Consensus 426 ~~vm~~~ 432 (480)
T PLN00164 426 RSLMGGG 432 (480)
T ss_pred HHHhcCC
Confidence 7888764
No 387
>PLN00414 glycosyltransferase family protein
Probab=97.44 E-value=0.0025 Score=70.53 Aligned_cols=150 Identities=8% Similarity=0.033 Sum_probs=89.7
Q ss_pred CCcEEEEecCCCCCCC-HHHHHHHHHHHhhCCCeEEEEecCChh--h-----HHHHHHHHHHcCCCCCceEEcCCCCcHH
Q 002431 711 EDKFIFACFNQLYKMD-PEIFNTWCNILRRVPNSALWLLRFPAA--G-----EMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~--~-----~~~l~~~~~~~g~~~~rv~f~~~~~~~~ 782 (922)
++.+||.||+...... +.+.++... |...-...||++..+.. . .+.+..+... ..+++.|+.|..+
T Consensus 251 ~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~-----~g~vv~~w~PQ~~ 324 (446)
T PLN00414 251 PGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKG-----RGIVWEGWVEQPL 324 (446)
T ss_pred CCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcC-----CCeEEeccCCHHH
Confidence 3458999999887776 455554443 33333345677754211 0 1223333322 2256778999888
Q ss_pred HHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHH
Q 002431 783 HIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVS 855 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~~~~~~~~~ 855 (922)
.+.- ..++.|| .+.|.+|++||+++|||+|+++--.- ....+..+ ..+|+.- -+. -+.++..+.+.+
T Consensus 325 vL~h-~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~-~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 325 ILSH-PSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSV-KVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred HhcC-CccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEE-EeccccCCccCHHHHHHHHHH
Confidence 8742 4456676 46779999999999999999875322 22233444 3456543 221 367788888888
Q ss_pred HhcCH-HHHHHHHHHHHh
Q 002431 856 LALDR-QKLQALTNKLKS 872 (922)
Q Consensus 856 l~~d~-~~~~~~~~~~~~ 872 (922)
++.++ +..+++|++.++
T Consensus 399 ~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HhcCChhhHHHHHHHHHH
Confidence 88654 444555555443
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.42 E-value=0.00019 Score=75.74 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=90.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
-+......+.++.|+..|.++++++|+.+..+.+++.++.+.+++..|+..+.++++.+|....+|+..|.++.+.+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH
Q 002431 424 AAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 424 ~A~~~~~~al~~~p~~~~~~~~ 445 (922)
+|...|++...+.|+.+.+...
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999998876543
No 389
>PLN02210 UDP-glucosyl transferase
Probab=97.41 E-value=0.0053 Score=68.42 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=90.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+||.+|+...+..+..++..+.-++..+...+|.++.... .... ..+.+. +..+|....++.|..+.+.- ..+.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-~~~~-~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-AQNV-QVLQEM-VKEGQGVVLEWSPQEKILSH-MAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc-ccch-hhHHhh-ccCCCeEEEecCCHHHHhcC-cCcC
Confidence 348999999888889999999998899888878887764211 1111 112222 10255566789998887742 3344
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc-------CCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV-------NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~-------~~~~~~~~~~~~l~~d~~ 861 (922)
.|| .+.|-+|++||+++|||+|+++--.-. .+-+..+.. +|+.- .+. -+.++..+.+.+++.+++
T Consensus 345 ~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ-~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 345 CFV---THCGWNSTIETVVAGVPVVAYPSWTDQ-PIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred eEE---eeCCcccHHHHHHcCCCEEeccccccc-HHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 666 467788999999999999998743211 122333333 44443 221 266788888888876643
No 390
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.38 E-value=0.0064 Score=67.21 Aligned_cols=140 Identities=14% Similarity=0.216 Sum_probs=87.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
+.+||.+|+......++.++..+.-+...| .+|.+..+. .+.+-+-+.+. +..+++.+.++.|..+.+. ...+.
T Consensus 264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~--~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~-H~~v~ 337 (449)
T PLN02173 264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE--ESKLPPGFLET-VDKDKSLVLKWSPQLQVLS-NKAIG 337 (449)
T ss_pred CceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc--hhcccchHHHh-hcCCceEEeCCCCHHHHhC-CCccc
Confidence 448999999888888888888777776565 677775321 11121112111 2246788889999888774 23344
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc------CCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV------NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~------~~~~~~~~~~~~l~~d~~ 861 (922)
.|| .+.|.+|++||+++|||+|+++--.-. ..-+..+.. +|+.-.+-. -+.++..+.+.+++.+++
T Consensus 338 ~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ-~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 338 CFM---THCGWNSTMEGLSLGVPMVAMPQWTDQ-PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred eEE---ecCccchHHHHHHcCCCEEecCchhcc-hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh
Confidence 665 467799999999999999998743211 222233332 233221110 166888888888887643
No 391
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.38 E-value=0.007 Score=67.00 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=90.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh--------hHHHH--HHHHHHcCCCCCceEEcCCCCcH
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRL--RAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l--~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
+.+||.||+.........++..+.-+...+...||.+..+.. ....+ -+-+.+. + .+|+.+.++.|..
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~ 338 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQI 338 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCCHH
Confidence 458999999888999999999998899999999998864211 00011 1112211 3 4777778999988
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh---cCCCCccc----cCCHHHHHHHHH
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA---TGLGEEMI----VNSMKEYEERAV 854 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~---~g~~~~~i----~~~~~~~~~~~~ 854 (922)
+.+.- ..+-.|+ .+.|.+|++||+++|||+|+++--.=. ...+..+.. .|+.- .. .-+.++..+++.
T Consensus 339 ~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ-~~na~~~~~~~~~G~~~-~~~~~~~~~~e~l~~av~ 412 (455)
T PLN02152 339 EVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQ-PANAKLLEEIWKTGVRV-RENSEGLVERGEIRRCLE 412 (455)
T ss_pred HHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccc-hHHHHHHHHHhCceEEe-ecCcCCcCcHHHHHHHHH
Confidence 87732 2233455 467799999999999999998742111 111222222 23321 11 126678888888
Q ss_pred HHhcCHH
Q 002431 855 SLALDRQ 861 (922)
Q Consensus 855 ~l~~d~~ 861 (922)
+++.|+.
T Consensus 413 ~vm~~~~ 419 (455)
T PLN02152 413 AVMEEKS 419 (455)
T ss_pred HHHhhhH
Confidence 8886543
No 392
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.018 Score=57.49 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-VDAHSNLGNLM 145 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~ 145 (922)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34445566667778888888888888888888888888888888888888888887777653322211 11111122333
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-.+++.+. .+..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333333322 234455667888888888888888888888888888888777643 34557777777777777555444
Q ss_pred HHHHH
Q 002431 224 MCYQR 228 (922)
Q Consensus 224 ~~~~~ 228 (922)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44443
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.1 Score=59.94 Aligned_cols=174 Identities=24% Similarity=0.242 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEK-----GDIDLAIRYYLVAIEL-----RPNFADAWSNLASAYMRKG--- 115 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 115 (922)
...|.++++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45678888777654 4567777777777653 5888899999888761 1113446677777777643
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----CCHH
Q 002431 116 --RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES----GDLN 186 (922)
Q Consensus 116 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~ 186 (922)
+.+.|..+|.++-+.+ ++++.+.+|.++..-. +...|.++|..+.+. .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 5677888887776654 4556667777766554 456777777776653 3445556666665532 3566
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 002431 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAV 230 (922)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 230 (922)
.|..+++++.+.+ .+.+...++..+... +.+..+.-.+....
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 7777777776665 233333333333222 55555554444433
No 394
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.36 E-value=0.084 Score=57.51 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcC-CCc--HHH
Q 002431 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----NAIAFGNLASTYYERGQADMAILYYKQAIGCD-PRF--LEA 272 (922)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~--~~~ 272 (922)
.....+...+.+..+.|+++.|...+.++....+ .+......+..+...|+..+|+..++..+... ... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456788888999999999999999988887542 25666777888888899999998888877621 111 000
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc------CChhHHHHHHHHHHhcCCCCchhhhhH
Q 002431 273 YNNLGNALKD--VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW------NMLPAAASYYKATLAVTTGLSAPFNNL 344 (922)
Q Consensus 273 ~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l 344 (922)
...+...... ............ ......++..+|...... +..+++...|+++.+..|....+|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0011100000 000000000000 001134667777777776 899999999999999999999999988
Q ss_pred HHHHHHcC-----------------CHHHHHHHHHHHHccCCCC
Q 002431 345 AVIYKQQG-----------------NYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 345 a~~~~~~g-----------------~~~~A~~~~~~al~~~p~~ 371 (922)
|..+.+.= -...|+..|-+++..++..
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 88775431 1245899999999998873
No 395
>PLN02555 limonoid glucosyltransferase
Probab=97.35 E-value=0.0039 Score=69.51 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=88.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCCh----hhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
.+||.+|+......+..+.....-+...+...||.+..+. .....+-+-+.+ .+ .+|+.+.++.|..+.+. ..
T Consensus 278 sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H~ 354 (480)
T PLN02555 278 SVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-HP 354 (480)
T ss_pred ceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-CC
Confidence 4788899887777777777777777778877788776321 101112222222 24 47888889999877773 35
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccc--------cCCHHHHHHHHHHHhcCH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI--------VNSMKEYEERAVSLALDR 860 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i--------~~~~~~~~~~~~~l~~d~ 860 (922)
.+..|+ .+.|-+|++||+++|||+|+++--.=.-.-+.-+...+|+.- -+ .-+.++..+.+.+++.++
T Consensus 355 ~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 355 SVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred ccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 567776 467789999999999999998743111111111222235543 22 115677777887887654
No 396
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.29 Score=51.83 Aligned_cols=424 Identities=12% Similarity=0.007 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
.+...|.++.+++++.+|.+.|.++.+...+.+ +.+..+....+-.++.+.-.......-+..|+.+....-.+.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 455678889999999999999999987655543 334444444445666776666666666677888888888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC----CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----CcH
Q 002431 110 AYMRKGRLNEAAQCCRQALALN----PL-----------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-P----TFA 169 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~----p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~ 169 (922)
..++.+.+.+|++.+......- +. +...-...+.++...|++.++...+++.+..- + -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 9999999999999887765541 11 11122346788889999999999999887642 2 334
Q ss_pred HHHHH----HHHHHHHc----CC-------HHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHH-----cCChHH
Q 002431 170 IAWSN----LAGLFMES----GD-------LNRALQYYKEAVKLK--------PTFPDAYLNLGNVYKA-----LGMPQE 221 (922)
Q Consensus 170 ~~~~~----la~~~~~~----g~-------~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~-----~g~~~~ 221 (922)
..+.. +++.|.-. .. |+-+.-+.+++-..+ |.+. ....+.....- .--+-+
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee-L~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE-LFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH-HHHHHHHHHHhCCHhhccHHHH
Confidence 44443 33333210 11 111111111111110 1000 00000000000 000001
Q ss_pred HHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 222 AIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 222 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
+++.+++ ...+|+ ......+..-... +.+++....+..... ...-.+.+..+-....+.++..+|.+++.-
T Consensus 247 ~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 247 ILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1111100 001232 1111111111111 334444333333211 111123344444555677888889888888
Q ss_pred HHhhCCCChHHHHh------HHHHHHH-cCC---hhHHHHHHHHHHhcCCCCch---hhhhHHHHHHHcCC-HHHHHHHH
Q 002431 296 CLSLQPSHPQALTN------LGNIYME-WNM---LPAAASYYKATLAVTTGLSA---PFNNLAVIYKQQGN-YADAISCY 361 (922)
Q Consensus 296 al~~~p~~~~~~~~------la~~~~~-~~~---~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~-~~~A~~~~ 361 (922)
....+|+.....-. +-.+.+. ... ...=+.+++.+-..+-+... -+..-|.-+-+.|. -++|+.++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 77788876421111 1111110 011 11112233333222222211 13344556667776 88999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH--HH------HHHHh---hCC---CcHHHHHHHHH--HHHhcCCHHHH
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DY------IRAIT---IRP---TMAEAHANLAS--AYKDSGHVEAA 425 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~------~~al~---~~p---~~~~~~~~la~--~~~~~g~~~~A 425 (922)
+.+++..+.+...-+..-.. -...|.+|+. .+ +..++ +.| .+.+.-+.|+. .+...|++.++
T Consensus 404 k~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 404 KLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999988876543322111 1112233321 11 12221 112 23445555554 56789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 426 IKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 426 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
.-+-.-..+..| ++.++.-+..++....++++|-..+..
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999 788888888888877777776665543
No 397
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.34 E-value=0.0002 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=22.6
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
No 398
>PLN02208 glycosyltransferase family protein
Probab=97.34 E-value=0.004 Score=68.86 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=90.5
Q ss_pred CCcEEEEecCCCCCCCHH-HHHHHHHH-HhhCCCeEEEEecCChh---hHHHHHHHHHHcCCCCCceEEcCCCCcHHHHH
Q 002431 711 EDKFIFACFNQLYKMDPE-IFNTWCNI-LRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 785 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~ 785 (922)
++.+||.||+...+..+. +.++...+ ....|. +|++..+.. ....+-+-+.+. +....+++.++.|..+.+.
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~ 326 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILD 326 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhc
Confidence 356899999988876666 77766665 566774 566553210 011121112111 1124567789999888874
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHHhc
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSLAL 858 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~~~~~~~~~l~~ 858 (922)
...+..|| .+.|-++++||+++|||+|+++--.=.-. -+.++ ..+|+.- -+. -+.++..+++.++..
T Consensus 327 -H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~-na~~~~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 327 -HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL-FTRLMTEEFEVSV-EVSREKTGWFSKESLSNAIKSVMD 400 (442)
T ss_pred -CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH-HHHHHHHHhceeE-EeccccCCcCcHHHHHHHHHHHhc
Confidence 34445566 46779999999999999999874211111 22222 3355543 221 266777777778886
Q ss_pred CH-HHHHHHHHHHHh
Q 002431 859 DR-QKLQALTNKLKS 872 (922)
Q Consensus 859 d~-~~~~~~~~~~~~ 872 (922)
++ +..+++|++.++
T Consensus 401 ~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 401 KDSDLGKLVRSNHTK 415 (442)
T ss_pred CCchhHHHHHHHHHH
Confidence 64 444555555443
No 399
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.34 E-value=0.0041 Score=72.57 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhC----CCeEEEEecCChh-hH------HHHHHHHHHcCCCCCceEEc
Q 002431 709 LPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV----PNSALWLLRFPAA-GE------MRLRAYAVAQGVQPDQIIFT 775 (922)
Q Consensus 709 l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~-~~------~~l~~~~~~~g~~~~rv~f~ 775 (922)
+.++.+++|...|+ +|...-++....++.+-. ....+++.|.+.. .. ..+...++.-.+ ++||+|+
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfl 552 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFL 552 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEE
Confidence 44566788888877 599999888877765411 2378888885431 11 234444443355 5799998
Q ss_pred CCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCC-----
Q 002431 776 DVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNS----- 845 (922)
Q Consensus 776 ~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~----- 845 (922)
.--+ .... +++.+||+|.|+. +|. ||+-+=||..|++.++.-...+.+-.. |-++ |...+
T Consensus 553 e~Yd~~lA~~--LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nG-waig~~~~~~ 622 (778)
T cd04299 553 EDYDMALARH--LVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENG-WAIGDGDEYE 622 (778)
T ss_pred cCCCHHHHHH--HHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCc-eEeCCCcccc
Confidence 7422 2333 3899999999975 888 999999999999999655443333222 5555 43321
Q ss_pred ---------HHHHHHH----HHHHhcC------H-HHHHHHHHHHHhhcccCCCCChHHHHHHHH-HHHHHH
Q 002431 846 ---------MKEYEER----AVSLALD------R-QKLQALTNKLKSVRLTCPLFDTARWVKNLE-RSYFKM 896 (922)
Q Consensus 846 ---------~~~~~~~----~~~l~~d------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~y~~~ 896 (922)
.+++-++ ++-+--+ | .+.+.++..++.. .|.|++.+|+++.. +.|.-+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHH
Confidence 2222122 2212222 2 4667777777664 67899999998864 455443
No 400
>PLN03015 UDP-glucosyl transferase
Probab=97.31 E-value=0.0093 Score=65.97 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=87.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-----------hHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
..++|.||+......+..++..+.-++..+...||.+..+.. ..+.+-.-+.+. +....+++.++.|.
T Consensus 267 ~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er-~~~rGl~v~~W~PQ 345 (470)
T PLN03015 267 RSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR-TRGVGLVVTQWAPQ 345 (470)
T ss_pred CCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh-hccCceEEEecCCH
Confidence 469999999999999999999999999999989999853210 011111111111 11112577889998
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc-------CCHHHHHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV-------NSMKEYEER 852 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~-------~~~~~~~~~ 852 (922)
.+.+. ...+-.|| .+.|-+|++||+++|||+|+++--.- ....+..+ ...|+.- -+. -+.++..+.
T Consensus 346 ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~~~D-Q~~na~~~~~~~gvg~-~~~~~~~~~~v~~e~i~~~ 419 (470)
T PLN03015 346 VEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPLYAE-QWMNATLLTEEIGVAV-RTSELPSEKVIGREEVASL 419 (470)
T ss_pred HHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEecccccc-hHHHHHHHHHHhCeeE-EecccccCCccCHHHHHHH
Confidence 88885 34445565 46778999999999999999874211 11112222 3334433 221 255666666
Q ss_pred HHHHhc
Q 002431 853 AVSLAL 858 (922)
Q Consensus 853 ~~~l~~ 858 (922)
+.+++.
T Consensus 420 v~~lm~ 425 (470)
T PLN03015 420 VRKIVA 425 (470)
T ss_pred HHHHHc
Confidence 666663
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.30 E-value=0.14 Score=54.17 Aligned_cols=130 Identities=12% Similarity=-0.024 Sum_probs=106.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
-....|+.-.|-.-...++...|.++......+.+....|+|+.|...+..+-+.-.....+...+.......|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567888889888889999999999999999999999999999999887765554444456666777888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA 171 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (922)
...+-++...-.+++.....+......|-++++...+++.+.++|.....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999988777777777777777778888999999999999987765433
No 402
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.24 E-value=0.0026 Score=68.13 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=89.2
Q ss_pred CCCcEEEEecCCCCCCC-H----HHHHHHHHHHhhCCCeEEEEecC-ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 710 PEDKFIFACFNQLYKMD-P----EIFNTWCNILRRVPNSALWLLRF-PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
..+.+++.++.+..... + .+.++..++.+. ++..+++... .|.+...+.+...+. ++|++...+++.++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence 55667888888776665 4 566666666666 6776655543 244466666555543 39999999999999
Q ss_pred HHhccCCcEEecCCCCCChhHHH-HHHHcCCCeeeec--CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGT-DILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 860 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~-eal~~g~Pvv~~~--~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~ 860 (922)
+.+++.++++| -+.| ++. ||.++|+|||++. |+...+|.. |-.- ++..+.++..+++.++..+.
T Consensus 253 l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nv-lv~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 253 LSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNV-LVGTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEE-EETSSHHHHHHHHHHHHH-H
T ss_pred HHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceE-EeCCCHHHHHHHHHHHHhCh
Confidence 99999999998 5557 888 9999999999985 555555554 5555 66678899888888888774
Q ss_pred HHHHH
Q 002431 861 QKLQA 865 (922)
Q Consensus 861 ~~~~~ 865 (922)
+.+..
T Consensus 320 ~~~~~ 324 (346)
T PF02350_consen 320 DFYRK 324 (346)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 403
>PLN02534 UDP-glycosyltransferase
Probab=97.23 E-value=0.0042 Score=69.38 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=70.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh---hHHHH-HHHHHHcCCCCCceEEcCCCCcHHHHHhc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRL-RAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l-~~~~~~~g~~~~rv~f~~~~~~~~~~~~~ 787 (922)
..+||.||+......+.-+.-.+.-++..+...||.+..+.. ....+ -+-+.+. +...++++.|+.|..+.+.
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~-- 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILS-- 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhc--
Confidence 358999999887777766666667788888889999874211 01111 1112222 2235688889999877663
Q ss_pred cCCcE--EecCCCCCChhHHHHHHHcCCCeeeecCC
Q 002431 788 SLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 788 ~~~dv--~l~~~~~~g~~t~~eal~~g~Pvv~~~~~ 821 (922)
..+| || .+.|.+|++||+++|||+|+++.-
T Consensus 360 -h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 360 -HPAIGGFL---THCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred -CCccceEE---ecCccHHHHHHHHcCCCEEecccc
Confidence 3444 55 467799999999999999998863
No 404
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.23 E-value=0.02 Score=61.28 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc-hhhhHHHHHHhcCCCC
Q 002431 769 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM-ATRVAGSLCLATGLGE 839 (922)
Q Consensus 769 ~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~-~~r~~~~~~~~~g~~~ 839 (922)
.++|.+.++.+ .++...+..||+++.. +|.+|+.||+++|+|+|..+-... ....-+..+...|+..
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~ 295 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI 295 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE
Confidence 47889888765 6788888999999943 466788999999999999886532 3445667777888865
No 405
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.20 E-value=0.0011 Score=72.81 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=72.3
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---CCCcccc--------CCHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---LGEEMIV--------NSMKE 848 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---~~~~~i~--------~~~~~ 848 (922)
.+|..+...||+-+.||.|+- |-|-+|+.+||||.||..-..| |.-+...++ -.+-.|. ++.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF----G~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF----GCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH----HHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH----HHHHHHhhccCcCCcEEEEeCCCCCHHHHHHH
Confidence 356666688999999999999 9999999999999999764332 211111111 1110232 23455
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHh
Q 002431 849 YEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 849 ~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~ 901 (922)
+.+.+..++. ++..|...|.+.++. |.+++++.|....+++|..++++-.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 5566666664 555666667666543 6789999999999999999888654
No 406
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.19 E-value=0.013 Score=66.13 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=84.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhh---HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
..+||.||+........-+....+-+...+...||.++.+... ...+-.-+.+.-. ...|+..++.|..+.+.- .
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h-~ 362 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDH-Q 362 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhcc-C
Confidence 4588999998776655555555555777777788888743110 1112222222222 457888999998877732 2
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecC--CcchhhhHHHHHH---hcCCC----Cc----cccCCHHHHHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCL---ATGLG----EE----MIVNSMKEYEERAVS 855 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~--~~~~~r~~~~~~~---~~g~~----~~----~i~~~~~~~~~~~~~ 855 (922)
.+..|| .++|-+|++||+++|||+|+++- +.+.. +..+. .+|+. .. .=.-+.++..+.+.+
T Consensus 363 ~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~n---a~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 363 ATGGFV---THCGWNSLLEGVAAGLPMVTWPVGAEQFYN---EKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred ccceee---ecCcchHHHHHHHcCCCeeeccchhhhhhh---HHHHHHhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 233465 46778999999999999999873 22211 11111 12221 10 001267788888888
Q ss_pred HhcCH
Q 002431 856 LALDR 860 (922)
Q Consensus 856 l~~d~ 860 (922)
+..|+
T Consensus 437 ~m~~~ 441 (482)
T PLN03007 437 VIVGE 441 (482)
T ss_pred HhcCc
Confidence 88775
No 407
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.18 E-value=0.26 Score=51.31 Aligned_cols=61 Identities=13% Similarity=-0.046 Sum_probs=27.2
Q ss_pred HHhHHHHHHHcCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 239 FGNLASTYYERGQAD---MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
+..++.+|...+..+ +|...++.+....|+.+..+.....++.+.++.+++.+.+.+++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 334444444444332 2333333333444444444444444444455555555555555543
No 408
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.00099 Score=43.65 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 409
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.15 E-value=0.00074 Score=44.25 Aligned_cols=32 Identities=47% Similarity=0.635 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 410
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.08 E-value=0.0013 Score=43.13 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777765
No 411
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.044 Score=51.19 Aligned_cols=117 Identities=20% Similarity=0.111 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 51 MCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCC 124 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 124 (922)
+.....++....++.+ ..+-..++..+...|++++|+..++.++....+ ..-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444445555555443 334567788888899999999999988864333 1335567888899999999998888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 125 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
+.....+ -........|+++...|+-++|...|+++++..++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 122345678899999999999999999999886444
No 412
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.01 E-value=0.57 Score=48.74 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=74.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhC----CCc----hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc----CCC----------
Q 002431 9 MYKSGSYKQALEHSNSVYERN----PLR----TDNLLLLGAIYYQLH-DYDMCIARNEEALRL----EPR---------- 65 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~---------- 65 (922)
..++|+++.|..++.++-... |+. ...++..|......+ ++++|...++++.+. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457788888888888875433 222 344566677777777 888888888777665 111
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 66 FAECYGNMANAWKEKGDID---LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
...++..++.+|...+.++ +|..+.+.+.+..|+.+..+.....+..+.++.+++.+.+.+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1234556666666655543 3444445555555665666555555555566666666666666654
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.00 E-value=0.23 Score=52.36 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=75.1
Q ss_pred hHHHHhHHHHHHH----cCChhHHHHHHHHHHhcCCCC-chhhhhHHHHHHHcC-------CHHHHHHHHHHHHccCCCC
Q 002431 304 PQALTNLGNIYME----WNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQG-------NYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 304 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~ 371 (922)
+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+...++..|..-+ +...|...|.++-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3444444444443 224445555555544443222 222344444443321 2246777777776654 6
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC---------------CHHHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---------------HVEAAIKSYKQA 432 (922)
Q Consensus 372 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a 432 (922)
+.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+.++
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKA 263 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHH
Confidence 7777778877755 3477888888888888766 67777777 555555 666666666666
Q ss_pred HhcCCC
Q 002431 433 LLLRPD 438 (922)
Q Consensus 433 l~~~p~ 438 (922)
....+.
T Consensus 264 ~~~~~~ 269 (292)
T COG0790 264 CELGFD 269 (292)
T ss_pred HHcCCh
Confidence 665544
No 414
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.00 E-value=0.039 Score=55.31 Aligned_cols=286 Identities=16% Similarity=0.138 Sum_probs=146.2
Q ss_pred ecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC--------------HHHHHHH
Q 002431 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS--------------SDMIAKL 607 (922)
Q Consensus 542 ~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 607 (922)
|+-|..+.|..+|+.+++..+.+.++||.+=+-.- +.+.+-++..+..+..+..-. .-.+.+.
T Consensus 3 VwiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki 79 (346)
T COG1817 3 VWIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKI 79 (346)
T ss_pred EEEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999999999998766322 236777777776555543211 1347899
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccC----CCccc---eeecC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH----IYSEK---LVHVP 680 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~----~~~e~---~~~lp 680 (922)
|.+.++||.+. -|+.-..--.|++. -|..+.- -.+..---..+-+=+++.++.|..... .+.++ +...+
T Consensus 80 ~~~~kpdv~i~--~~s~~l~rvafgLg-~psIi~~-D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~~~~ 155 (346)
T COG1817 80 IAEFKPDVAIG--KHSPELPRVAFGLG-IPSIIFV-DNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGADPNKISGYN 155 (346)
T ss_pred HhhcCCceEee--cCCcchhhHHhhcC-CceEEec-CChhHHHHhhcchhhhhheecccccchHHHHHhCCCccceeccc
Confidence 99999999975 33311110111111 1222210 111000011222235566666655433 22222 22222
Q ss_pred Cc-cccCCCccccccCCCCCCCCCcCCCCCCCCc-EEEEec---CCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 681 HC-YFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-FIFACF---NQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 681 ~~-~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-~~~~~~---~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
+. .+.+.+ .+.|+ +..-+++|+.++. +++-.+ +..+ +.+.. +....++++..++--.+++...
T Consensus 156 giae~~~v~----~f~pd---~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~-~~~~~~li~~l~k~giV~ipr~--- 224 (346)
T COG1817 156 GIAELANVY----GFVPD---PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRG-ISVLPDLIKELKKYGIVLIPRE--- 224 (346)
T ss_pred ceeEEeecc----cCCCC---HHHHHHcCCCCCCceEEEeeccccceeeccccc-hhhHHHHHHHHHhCcEEEecCc---
Confidence 21 111111 12222 3456789998862 332222 2222 33322 2223333333332223333321
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeee-cCCcchhhhHHHHHH
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL 833 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~-~~~~~~~r~~~~~~~ 833 (922)
...++.++ |. +++..+ -+..+++.++--+|+++ -+|||-.-||...|+|+|.+ +|...+ | +..+-
T Consensus 225 -~~~~eife--~~---~n~i~p-k~~vD~l~Llyya~lvi----g~ggTMarEaAlLGtpaIs~~pGkll~--v-dk~li 290 (346)
T COG1817 225 -KEQAEIFE--GY---RNIIIP-KKAVDTLSLLYYATLVI----GAGGTMAREAALLGTPAISCYPGKLLA--V-DKYLI 290 (346)
T ss_pred -hhHHHHHh--hh---ccccCC-cccccHHHHHhhhheee----cCCchHHHHHHHhCCceEEecCCcccc--c-cHHHH
Confidence 22333443 22 111112 23456566655577766 56688889999999999954 553221 2 24555
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002431 834 ATGLGEEMIVNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 834 ~~g~~~~~i~~~~~~~~~~~~~l~~d~~ 861 (922)
..|+. +-..|+.+-++.|+++..++.
T Consensus 291 e~G~~--~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 291 EKGLL--YHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred hcCce--eecCCHHHHHHHHHHHhhchh
Confidence 55652 223688899999999987765
No 415
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.96 E-value=0.002 Score=42.11 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM 405 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (922)
.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
No 416
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.95 E-value=0.7 Score=55.55 Aligned_cols=390 Identities=13% Similarity=0.014 Sum_probs=192.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEK----G---DIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
...++...+.|+.|+..|++.....|.. -++.+..|.....+ | .+++|+.-|++.-. .|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456777888999999999999888864 45666677666542 2 46677777776543 455566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
.+|.+.|++++-++.+.-+++..|..+..-...-.+..+. .+-..|....--++...|.....-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 628 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR----------- 628 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch-----------
Confidence 8999999999999999999988877665433322222221 112233333334444444432211
Q ss_pred CHHHHHHHHHHHHh---------cCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCC
Q 002431 184 DLNRALQYYKEAVK---------LKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 251 (922)
Q Consensus 184 ~~~~A~~~~~~~l~---------~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 251 (922)
+-...++.... +++.... ..+.+-.. .-.|..---.++++++....+ ..+....-.+....|+
T Consensus 629 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 703 (932)
T PRK13184 629 ---EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRD-YRALADIFYVACDLGN 703 (932)
T ss_pred ---HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhccc-HHHHHHHHHHHHHhcc
Confidence 11111111111 1111111 11111111 122333334445555554433 3555555566677787
Q ss_pred hHHHHHHHHHHHhc-----CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHhHHHHHHHc
Q 002431 252 ADMAILYYKQAIGC-----DPRF--------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEW 317 (922)
Q Consensus 252 ~~~A~~~~~~~l~~-----~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 317 (922)
++-+.+.....-.. .|.+ ...+..-..++.....++++.+.+.+ .+|.... +....+.-....
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 780 (932)
T PRK13184 704 WEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLD 780 (932)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHh
Confidence 77665555443311 1111 11122223334444455655543322 2222211 111111111112
Q ss_pred CChh---HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 318 NMLP---AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR--IDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 318 ~~~~---~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
++.+ .+++.+++.................+|....++++|-+++...-. ...+...++...|.-+...++-+-|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (932)
T PRK13184 781 EEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAK 860 (932)
T ss_pred ccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHH
Confidence 2222 222222222111112223344556667777888888777744311 12345567777777777777777777
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH
Q 002431 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 459 (922)
..|..+.+-.+- +. ...+..+.-.|...+...++++-. ....+...+.|.|+-++.
T Consensus 861 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 916 (932)
T PRK13184 861 AHFSGCREDALF-PR--SLDGDIFDYLGKISDNLSWWEKKQ--------LLRQKFLYFHCLGDSEER 916 (932)
T ss_pred HHHhhccccccC-cc--hhhccccchhccccccccHHHHHH--------HHHHHHHHHHHhCChhHh
Confidence 777776632211 11 123333444455444444444321 223344455566665554
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.93 E-value=1.3 Score=51.69 Aligned_cols=403 Identities=11% Similarity=0.011 Sum_probs=216.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH---H
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMANA---W 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~---~ 77 (922)
|..|...++.|++..+.....++ ...|- ..+..........+ .++ .+...++..|+.+..-...... +
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 55677788888888776666554 33342 22222222222222 233 3344455666655444333332 2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
.+.+++..-+.++ ...|.+.......+......|+.++|.....++-......+.....+-..+.+.|........
T Consensus 110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 3455666555533 224677777777888888899988888877777666555555555555555444443332211
Q ss_pred HHHHHhhCCCcHHHHHHHHH-----------HHHH-cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 002431 158 YLEALRIQPTFAIAWSNLAG-----------LFME-SGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 158 ~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~ 224 (922)
-+--+....++......+.. .... ..+...+...+.. ..++. ......++..-....+.+.|..
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 11111111111111111111 1110 1111111111111 11111 1112223333345566788888
Q ss_pred HHHHHHhhCC---C--hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 225 CYQRAVQTRP---N--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 225 ~~~~~~~~~p---~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
.+.+...... . ...+..++......+...+|...+........ +.+............++++.+...+..+-..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 8887644332 1 33444555444444336677777776553322 2233444444556888998888888776554
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCH-H--HH-HHHHHHHHccCCCCHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY-A--DA-ISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~--~A-~~~~~~al~~~p~~~~~~ 375 (922)
........+.+|..+...|+.++|...|+++... . ..|-.++.-. .|.. . .. ...-...+. . ...
T Consensus 342 ~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~--~fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~---~--~~~ 410 (644)
T PRK11619 342 AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--R--GFYPMVAAQR--LGEEYPLKIDKAPKPDSALT---Q--GPE 410 (644)
T ss_pred hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--CcHHHHHHHH--cCCCCCCCCCCCCchhhhhc---c--ChH
Confidence 4556778899999988899999999999997542 1 1222232221 2211 0 00 000000111 1 134
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
...+..+...|+..+|...+..++.. .+..-...++....+.|.++.|+....+..
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 56778888999999999999888875 235567788888889999999988776554
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.93 E-value=0.00093 Score=67.23 Aligned_cols=89 Identities=26% Similarity=0.249 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
.+..|.+++|++.|..++.++|..+..+...+.++.++++...|+..+..+++++|+...-|-..+.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhC
Q 002431 123 CCRQALALN 131 (922)
Q Consensus 123 ~~~~~l~~~ 131 (922)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555543
No 419
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.061 Score=49.78 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666666666666666655543
No 420
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.039 Score=54.46 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHhhCC-CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 715 IFACFNQL-YKMDPEIFNTWCNILRRVP-NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 715 ~~~~~~~~-~K~~~~~~~~~~~il~~~p-~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
++.+++-. .|+. ++++.+. |.+.+ |..++ +|.+......+++..++. +++.+.-. .++...++..+|.
T Consensus 161 ilI~lGGsDpk~l--t~kvl~~-L~~~~~nl~iV-~gs~~p~l~~l~k~~~~~----~~i~~~~~--~~dma~LMke~d~ 230 (318)
T COG3980 161 ILITLGGSDPKNL--TLKVLAE-LEQKNVNLHIV-VGSSNPTLKNLRKRAEKY----PNINLYID--TNDMAELMKEADL 230 (318)
T ss_pred EEEEccCCChhhh--HHHHHHH-hhccCeeEEEE-ecCCCcchhHHHHHHhhC----CCeeeEec--chhHHHHHHhcch
Confidence 55566644 3643 3444443 34444 44443 464433367777777763 55665543 4566777899999
Q ss_pred EecCCCCCChhHHHHHHHcCCC--eeeecCCcchhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 793 FLDTPLCNAHTTGTDILWAGLP--MITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 793 ~l~~~~~~g~~t~~eal~~g~P--vv~~~~~~~~~r~~~~~~~~~g~~~~~i-~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
.+ ..||.|+.||+..|+| ||++.....+ .+-.+..+|.--.+= ...+......+.++.+|+.+|..+...
T Consensus 231 aI----~AaGstlyEa~~lgvP~l~l~~a~NQ~~---~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 231 AI----SAAGSTLYEALLLGVPSLVLPLAENQIA---TAKEFEALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred he----eccchHHHHHHHhcCCceEEeeeccHHH---HHHHHHhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhc
Confidence 87 6789999999999999 5555443222 234566666533121 134566777889999999988887765
Q ss_pred HH
Q 002431 870 LK 871 (922)
Q Consensus 870 ~~ 871 (922)
.+
T Consensus 304 ~~ 305 (318)
T COG3980 304 SK 305 (318)
T ss_pred cc
Confidence 54
No 421
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0046 Score=62.02 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=75.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
|..-|+-|++.++|..|...|.+.++....+ ...|.+++.+....|+|..|+....+++..+|.+..++++=+.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3445677777778888888888887765443 346777888888888888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 002431 417 KDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
..+.++.+|..+.+..++.+-+.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Confidence 88888888888888777665443
No 422
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.039 Score=55.67 Aligned_cols=99 Identities=24% Similarity=0.276 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELR---PN-FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG 142 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 142 (922)
+..+..-|+-|++.++|..|+..|.+.++.. |+ +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5556666777888888888888888877763 32 4556777788888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Q 002431 143 NLMKAQGLVQEAYSCYLEALRIQ 165 (922)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~ 165 (922)
.++..+.++.+|....+..+..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 88888888888877777765543
No 423
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.85 E-value=0.017 Score=60.52 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=108.1
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC-CccceeecCCccccC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-YSEKLVHVPHCYFVN 686 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~-~~e~~~~lp~~~~~~ 686 (922)
+....+|++|-..+.|+...+-+-.....++.+.+++.|... ...+|.+++ |. ++.. -..+++..++.--..
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~-----p~-HD~~~~~~Nvl~t~ga~~~i 125 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIV-----PE-HDRLPRGPNVLPTLGAPNRI 125 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEE-----Cc-ccCcCCCCceEecccCCCcC
Confidence 445679999877666654333333333455677777888544 677888776 22 2111 223444433211111
Q ss_pred CCccccccCCCCCCCCCcCCC-CCCCC--cEEEEecCCCCCCCHH----HHHHHHHHHhhCCCeEEEEecCC---hhhHH
Q 002431 687 DYKQKNMDVLDPNCQPKRSDY-GLPED--KFIFACFNQLYKMDPE----IFNTWCNILRRVPNSALWLLRFP---AAGEM 756 (922)
Q Consensus 687 ~~~~~~~~~~~~~~~~~r~~~-~l~~~--~~~~~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~---~~~~~ 756 (922)
++.... ........++ .+|.+ .+.+|.-++.++.+++ +++...++.+..+ ..++|..+. +....
T Consensus 126 ~~~~l~-----~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~ 199 (311)
T PF06258_consen 126 TPERLA-----EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEA 199 (311)
T ss_pred CHHHHH-----HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHH
Confidence 110000 0000000011 12233 3567787778888877 4455556666676 566665543 22233
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhH-HHHHHHcCCCeeeecCCcchhhhH
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT-GTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t-~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.|++.+. - ...+.+....+..-+.+++..+|.++ .++ +.+ +.||.+.|+||.+++-+.-.+|+.
T Consensus 200 ~L~~~~~---~-~~~~~~~~~~~~nPy~~~La~ad~i~----VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~ 265 (311)
T PF06258_consen 200 ALRELLK---D-NPGVYIWDGTGENPYLGFLAAADAIV----VTEDSVSMVSEAAATGKPVYVLPLPGRSGRFR 265 (311)
T ss_pred HHHHhhc---C-CCceEEecCCCCCcHHHHHHhCCEEE----EcCccHHHHHHHHHcCCCEEEecCCCcchHHH
Confidence 4443332 2 35663335455555788889999988 344 444 459999999999887665444554
No 424
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.78 E-value=0.066 Score=58.85 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred HHHHHHcCCCCCceEE-cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCC
Q 002431 759 RAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 837 (922)
Q Consensus 759 ~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~ 837 (922)
++.....+- ++++++ .+..+..+....+..||+++-+=. -+++=|+.+|||+|.+.= +.=..+++..+|+
T Consensus 297 ~~l~~~~~~-~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl----Ha~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~ 367 (426)
T PRK10017 297 LNLRQHVSD-PARYHVVMDELNDLEMGKILGACELTVGTRL----HSAIISMNFGTPAIAINY----EHKSAGIMQQLGL 367 (426)
T ss_pred HHHHHhccc-ccceeEecCCCChHHHHHHHhhCCEEEEecc----hHHHHHHHcCCCEEEeee----hHHHHHHHHHcCC
Confidence 444444442 455443 333445688888999999996522 367899999999997763 3444578899999
Q ss_pred CCccccC----CHHHHHHHHHHHhcCHHH-HHHHHHHH
Q 002431 838 GEEMIVN----SMKEYEERAVSLALDRQK-LQALTNKL 870 (922)
Q Consensus 838 ~~~~i~~----~~~~~~~~~~~l~~d~~~-~~~~~~~~ 870 (922)
++ ++.+ +.++.++.+.++..+.+. ++.+++++
T Consensus 368 ~~-~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v 404 (426)
T PRK10017 368 PE-MAIDIRHLLDGSLQAMVADTLGQLPALNARLAEAV 404 (426)
T ss_pred cc-EEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99 7442 667899999999877553 33344433
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.78 E-value=0.095 Score=55.65 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHD------------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
..|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+.....+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888765543322 345566777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 002431 88 RYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALA 129 (922)
Q Consensus 88 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~ 129 (922)
+.+++++..+|++...|......... .-.+++....|.++++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 77777777777777766655554433 2345666666666654
No 426
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.75 E-value=0.68 Score=48.74 Aligned_cols=183 Identities=22% Similarity=0.199 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cC
Q 002431 44 YQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KG 115 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 115 (922)
...+++..|...+.++-.. .+......++.+|.. ..+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3445555555555555431 222444555555543 224555566555333 22344455555555554 23
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cC
Q 002431 116 RLNEAAQCCRQALALNPLL-VDAHSNLGNLMKAQG-------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SG 183 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 183 (922)
+..+|..+|+++.+.+... ..+...++..+..-. +...|...|.++-... +..+...++.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 5566666666665544222 222445555544421 1225666666655443 44555556655543 23
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhCCC
Q 002431 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---------------MPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~ 235 (922)
++.+|..+|.++-+... ....+.++ ++...| +...|...+.......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 56666666666666544 55555555 444443 666677777766655443
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.0017 Score=65.42 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=58.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..|.+++|++.|..+++++|.....+...+.++.++++...|+..+..+++++|+...-|-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC
Q 002431 430 KQALLLRP 437 (922)
Q Consensus 430 ~~al~~~p 437 (922)
..+.+++-
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 66666643
No 428
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.029 Score=51.96 Aligned_cols=123 Identities=21% Similarity=0.199 Sum_probs=79.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (922)
+......++.+.++..+++++.+.....-.-... ..-.......++.. ...+...++..+...|++++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHHH
Confidence 4444566777777777777777632211000000 00011111122221 13567778899999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCC
Q 002431 425 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481 (922)
Q Consensus 425 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~ 481 (922)
|+..+++++..+|-+..++..++.++...|+..+|...|+++...+.+.+ |+.|+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el--g~~Ps 135 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL--GIEPS 135 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH--S----
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh--CcCcC
Confidence 99999999999999999999999999999999999999999999888765 44453
No 429
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.65 E-value=0.003 Score=64.84 Aligned_cols=209 Identities=16% Similarity=0.129 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcccEEEecCccCCcCccC--CCccceeec
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH--IYSEKLVHV 679 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~--~~~e~~~~l 679 (922)
.+.+.||+.++|++||+.+.. +..++++ -.||..+.+-+... .+....+..+.... ....... ...+....+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997654 3334443 34788777644332 11111111111111 1100010 011111222
Q ss_pred CCccccCCCccccccCCCCCCCCCcCCCC-CCCCcEEEEecCC-CCCCCHHHHHHHHHHHhhCCC--eEEEEecCChhhH
Q 002431 680 PHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQ-LYKMDPEIFNTWCNILRRVPN--SALWLLRFPAAGE 755 (922)
Q Consensus 680 p~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~-~~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~~ 755 (922)
+........ ..........+..++ .+...++|...++ ..|.-|. +-|.++.+...+ ..+++.|.+....
T Consensus 78 ~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~~~~~vvl~g~~~~~~ 150 (247)
T PF01075_consen 78 PYPSTKPEL-----PLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPA--EKWAELIERLKERGYRVVLLGGPEEQE 150 (247)
T ss_dssp -SSSSSS---------THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--H--HHHHHHHHHHCCCT-EEEE--SSHHHH
T ss_pred CCCCCCcCC-----cCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCH--HHHHHHHHHHHhhCceEEEEccchHHH
Confidence 211100000 000000111233333 3334454544332 3455332 344444443222 5677777664422
Q ss_pred HHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 756 MRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 756 ~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
..+...+. .+.....+.+.|..+-.+...+++.+|+++-+- +| .+==|-++|+|+|++-|++...+.+
T Consensus 151 ~~~~~~~~-~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~D--tg--~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 151 KEIADQIA-AGLQNPVINLAGKTSLRELAALISRADLVIGND--TG--PMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHHHH-TTHTTTTEEETTTS-HHHHHHHHHTSSEEEEES--SH--HHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHHHH-HhcccceEeecCCCCHHHHHHHHhcCCEEEecC--Ch--HHHHHHHHhCCEEEEecCCCHHHhC
Confidence 22222222 233223688999988999999999999998321 22 2224778999999999998877766
No 430
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.12 Score=48.36 Aligned_cols=94 Identities=19% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
...++..+...+++++|...++..+....+ ..+-..++.+....|++++|+..+....+..-. .......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHH
Confidence 344556666666666666666666654333 344455666666666666666655543321101 112334566666
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 002431 282 DVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~ 300 (922)
..|+-++|+..|+++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666666654
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.85 Score=45.21 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=112.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCC--------CchHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc--CCCcHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNP--------LRTDNLLLLGAIYYQLHDYDMCIARNEEA---LRL--EPRFAEC 69 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~--~p~~~~~ 69 (922)
+++|+...+.+++++|+..|.+++.... ....+...++..|...|++..--+..... ... .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5789999999999999999999997632 12456778899999999876544333222 111 1122222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 002431 70 YGNMANAW-KEKGDIDLAIRYYLVAIELRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVD 136 (922)
Q Consensus 70 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~ 136 (922)
...+...+ .....++.-+.+....++..... ...-..++..+++.|+|.+|+......+.. .+....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222221 12234445555554444431111 122345677778888888888777666542 244455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWSNL--AGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
.+..-..+|....+..++...+..+-.. .|....+...+ |...+...+|..|..+|-++++-
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 6666667777777777766666555432 23333322222 33445566777777777777653
No 432
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=96.58 E-value=0.039 Score=60.58 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=117.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhh----HHHHHHHHH--------H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG----EMRLRAYAV--------A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~----~~~l~~~~~--------~ 764 (922)
+|+.++ +..++.++-|+. |+.+.=+.+|.++|++.|. .+|+-+..+.-. -.+++..++ +
T Consensus 248 lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~ 324 (474)
T PRK10117 248 LKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGK 324 (474)
T ss_pred HHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 455543 455777888874 9999999999999999986 456656543210 123333332 2
Q ss_pred cCCCCCc--eEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc
Q 002431 765 QGVQPDQ--IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840 (922)
Q Consensus 765 ~g~~~~r--v~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~ 840 (922)
.|- .+- |.+.. .++..++.++|+.+||+|-|+.--| .+++-|-.+|--|= .+|.-.-|+..++.- -|++.
T Consensus 325 fg~-~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~--~~GvLILSefAGaA~---~L~~A 398 (474)
T PRK10117 325 YGQ-LGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA--NPGVLVLSQFAGAAN---ELTSA 398 (474)
T ss_pred cCC-CCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCC--CCccEEEecccchHH---HhCCC
Confidence 232 121 55544 4688999999999999999999888 88999999986530 011111222221110 11121
Q ss_pred ccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 841 MIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 841 ~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
+++ .|.++.++++.+-++ .++.|++--+.+++.+.. +|...+++.+-+....+..+-
T Consensus 399 llVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~~~~ 458 (474)
T PRK10117 399 LIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIVPRS 458 (474)
T ss_pred eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhhhcC
Confidence 333 588888876655444 566666666667776644 899999999888777765433
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.56 E-value=0.18 Score=53.60 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 54 ARNEEALRLEPRFAECYGNMANAWKEKGD------------IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 54 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
.-|++.++.+|.+..+|..++...-..-. .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34667777888888888877765544322 344556666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+.+++++..+|.+...|..+...... .-.++.....|.++++.-.... ............++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~----------~~~~~~~~~~~~~e----- 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR----------SGRMTSHPDLPELE----- 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh----------ccccccccchhhHH-----
Confidence 66666666666666655554443332 2234455555555443210000 00000000000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (922)
.....++..+.......|..+.|+..++-.++.+
T Consensus 151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0012355666677777777788887777777753
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.52 E-value=2.4 Score=49.26 Aligned_cols=230 Identities=16% Similarity=0.038 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--F-------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP- 203 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~- 203 (922)
++......+.......++.+|..+..++...-+. . ....-..+.+....|++++|.+..+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3445555666666777777777777666554322 1 12233345566667777777777777776655432
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHH--HHHHHHH----HhcC
Q 002431 204 ----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMA--ILYYKQA----IGCD 266 (922)
Q Consensus 204 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A--~~~~~~~----l~~~ 266 (922)
.++..++.+..-.|++++|..+..++.+.... ..+....+.++..+|+...+ ...+... +...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 24556667777777777777777666554211 22333445566666632222 2222211 1223
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCh--H-HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-c
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ----PSHP--Q-ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-S 338 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~--~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 338 (922)
|.........+.++...-+++.+.....+.++.. |... . .++.++.++...|++++|...+........+. .
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3322222222222222222444444444444332 2211 1 22366777777777777777776665543222 1
Q ss_pred hh-hh-----hHHHHHHHcCCHHHHHHHHHH
Q 002431 339 AP-FN-----NLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 339 ~~-~~-----~la~~~~~~g~~~~A~~~~~~ 363 (922)
.. |. ........+|+.++|.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 11 111222345677766666655
No 435
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=1.1 Score=49.00 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCChHHHHHHHH
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYK 260 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 260 (922)
+...+.+....+..|+++......+..+...|+.+.|+..++..++ +. ...++.++.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556666667888888888888888888887888888887776 22 3455677788888888888888888
Q ss_pred HHHhcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---hCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002431 261 QAIGCDPRFLEAYNNLG-NALKD--------VGRVDEAIQCYNQCLS---LQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (922)
Q Consensus 261 ~~l~~~p~~~~~~~~l~-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 328 (922)
...+.+.-+.-.|..++ .++.. .|+-++|..+++...+ ..|.+..+-.. -..++.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhc
Confidence 87766554443444444 22221 2344444444443322 22221110000 0011111111
Q ss_pred HHHhcCCCCch--hhhhHHHHHHHc--CCHHHHHHHHH--HHHccCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002431 329 ATLAVTTGLSA--PFNNLAVIYKQQ--GNYADAISCYN--EVLRIDPLAAD--GLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (922)
Q Consensus 329 ~a~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~--~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (922)
+.- .++.... .+..++..+..- ...++..+.-. +.-+.+..+.+ -+..+|.++..+|+...|..+|...++
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~ 477 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVE 477 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 110 1111111 233444333321 12222221111 11112211222 456679999999999999999998885
Q ss_pred hC---CC----cHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCH
Q 002431 401 IR---PT----MAEAHANLASAYKDSGH-VEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 401 ~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 440 (922)
.. .+ .|.+++.+|..|..+|. ..++..++.+|.+...++.
T Consensus 478 ~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 478 KESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 42 11 26799999999999998 9999999999998876654
No 436
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.51 E-value=0.32 Score=53.41 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
...+.+..++..+.....+.-|.++|+++-.. ..+.+++.+.+++.+|..+-++.-+. .+.+|+-.|.-
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHH
Confidence 33344445555555555555555555543211 12334445555555555444432222 12334455555
Q ss_pred HHHcCCHHHHHHHHHH
Q 002431 348 YKQQGNYADAISCYNE 363 (922)
Q Consensus 348 ~~~~g~~~~A~~~~~~ 363 (922)
+.+..+++||.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 5555555555554443
No 437
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=96.43 E-value=0.033 Score=61.92 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhh--------HHHHHHHHH----H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAG--------EMRLRAYAV----A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~--------~~~l~~~~~----~ 764 (922)
+|++++ .+..++.++-|+. |+.+.-+.+|.++|++.|. .+|+-++.+... +.++.+.+. +
T Consensus 268 l~~~~~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~ 345 (474)
T PF00982_consen 268 LREKFK--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGK 345 (474)
T ss_dssp HHHHTT--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhh
Confidence 555543 2347888888874 9999999999999999986 455555533111 123333322 3
Q ss_pred cCCC-CCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCc-
Q 002431 765 QGVQ-PDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE- 840 (922)
Q Consensus 765 ~g~~-~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~- 840 (922)
.|-. -.-|++.. .++.++.+++|+.+||+|.|+.-.| .+++.|-.++-.+ .+|.-.-|..+++. . .|++.
T Consensus 346 ~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGaa-~--~L~~~a 419 (474)
T PF00982_consen 346 YGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGAA-E--QLSEAA 419 (474)
T ss_dssp H-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGGG-G--T-TTS-
T ss_pred cccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCHH-H--HcCCcc
Confidence 3431 11255544 5888999999999999999999999 9999999999776 11111122222110 0 23321
Q ss_pred -cc-cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 841 -MI-VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 841 -~i-~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
+| ..|.++.++++.+-++ .++.|+..-+.+++.+.. +|...+++.+-...
T Consensus 420 l~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~---~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 420 LLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVRE---HDVQWWAESFLRDL 472 (474)
T ss_dssp EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH---T-HHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh---CCHHHHHHHHHHHh
Confidence 22 2477877766655444 566666666677777655 78888887776543
No 438
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.41 E-value=2.8 Score=48.75 Aligned_cols=292 Identities=16% Similarity=0.075 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRP-----NFADAWSN 106 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 106 (922)
.+.+..-+.-+...|...+|++..-.+ .+|.. +......+.-....++..--. .+++.-| +++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHHHH
Confidence 556666667777888888888765443 12221 112222233333344433222 2222222 23455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HHHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAW 172 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 172 (922)
.+.......++.+|..++.++...-+. ........+.+....|++++|.+..+.++..-|.+ ....
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 677778889999999999888665432 22345566778888999999999999999876654 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--hHHHHHHHHHHHh----hCCC-hhHH
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGM--PQEAIMCYQRAVQ----TRPN-AIAF 239 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~----~~p~-~~~~ 239 (922)
..++.+..-.|++++|..+...+.+..... ..+....+.++..+|+ +.+....+...-. ..|. ....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 778888999999999999988887753221 1233455677788883 3333333333222 1222 1122
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHh----cCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hH----H-
Q 002431 240 GNLASTYYERGQADMAILYYKQAIG----CDPRFLE---AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQ----A- 306 (922)
Q Consensus 240 ~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~- 306 (922)
...+.++...-+++.+..-..+.++ ..|.... .++.++.+....|++++|...+.++.....+. +. +
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 2222222222225554444444432 2233222 23478899999999999999999887753222 11 1
Q ss_pred -HHhHHHHHHHcCChhHHHHHHHHH
Q 002431 307 -LTNLGNIYMEWNMLPAAASYYKAT 330 (922)
Q Consensus 307 -~~~la~~~~~~~~~~~A~~~~~~a 330 (922)
...........|+.++|.....+.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111122234567888887777663
No 439
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.38 E-value=0.0059 Score=39.89 Aligned_cols=32 Identities=41% Similarity=0.615 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+++.+|.+|...|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566666666666666666666666666553
No 440
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.36 E-value=0.034 Score=60.21 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCCCCcEEEEecCC-CCCCCHHHHHHHHHHHhh--CCCeEEEEecCChhhH-HHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 708 GLPEDKFIFACFNQ-LYKMDPEIFNTWCNILRR--VPNSALWLLRFPAAGE-MRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 708 ~l~~~~~~~~~~~~-~~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~~-~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
|+.+..++++..++ ..|.-| .+-|.++.+. ..+..+++.|.+...+ +..++.....+- ..-+.+.|..+-.+.
T Consensus 178 ~~~~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el 254 (344)
T TIGR02201 178 GVGQNYIVIQPTSRWFFKCWD--NDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQT-PRVTSLAGKLTLPQL 254 (344)
T ss_pred CCCCCEEEEeCCCCccccCCC--HHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCC-CcccccCCCCCHHHH
Confidence 45445556655443 345533 2333333321 1256677777543212 223333222222 123558899889999
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.++++.+|+++.. -+|++= =|-++|+|+|++-|++-..+.+
T Consensus 255 ~ali~~a~l~Vs~--DSGp~H--lAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 255 AALIDHARLFIGV--DSVPMH--MAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHhCCEEEec--CCHHHH--HHHHcCCCEEEEECCCCccccc
Confidence 9999999999943 333222 3778999999999987665554
No 441
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.30 E-value=0.17 Score=52.12 Aligned_cols=119 Identities=9% Similarity=-0.087 Sum_probs=80.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChh---hHHHHHHHHHHcCCCCCceE-EcCCCCcHHHHHhc
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAA---GEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRS 787 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~---~~~~l~~~~~~~g~~~~rv~-f~~~~~~~~~~~~~ 787 (922)
.+.+|.-+.+.-+|-+.++...+. ...+.++++ +|.|.. -.+++++...++-- .+++. +...+|.+||++++
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALL 263 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHH
Confidence 456777777778886666554432 234566554 355532 13456666666533 35665 46689999999999
Q ss_pred cCCcEEecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCC
Q 002431 788 SLADLFLDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839 (922)
Q Consensus 788 ~~~dv~l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~ 839 (922)
..||+....+. --|--|++=.+++|+||+.....++- ..|...|+|-
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~-----~~l~~~~ipV 311 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFW-----QDLKEQGIPV 311 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHH-----HHHHhCCCeE
Confidence 99999998875 45556677899999999976655443 4566668865
No 442
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.30 E-value=0.023 Score=61.32 Aligned_cols=116 Identities=9% Similarity=-0.027 Sum_probs=68.9
Q ss_pred cCCCCCCC--CcEEEEecCC--CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC
Q 002431 704 RSDYGLPE--DKFIFACFNQ--LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 704 r~~~~l~~--~~~~~~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
...++++. ..+++.-.++ ..|.-| .+.++-..+ .. .+..+++.|.+.. ++...+..+. .....+.+.|.
T Consensus 165 ~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l-~~-~~~~ivl~G~~~e-~~~~~~i~~~--~~~~~~~l~g~ 239 (334)
T TIGR02195 165 LAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRL-ID-QGYQVVLFGSAKD-HPAGNEIEAL--LPGELRNLAGE 239 (334)
T ss_pred HHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHH-HH-CCCEEEEEEChhh-HHHHHHHHHh--CCcccccCCCC
Confidence 34556653 2344443332 456643 333333333 33 3567777776543 4444443332 32233458898
Q ss_pred CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.+-.+..++++.+|+++.. -+|++= =|-++|+|+|++-|.+...+.+
T Consensus 240 ~sL~el~ali~~a~l~I~~--DSGp~H--lAaA~~~P~i~lfG~t~p~~~~ 286 (334)
T TIGR02195 240 TSLDEAVDLIALAKAVVTN--DSGLMH--VAAALNRPLVALYGSTSPDFTP 286 (334)
T ss_pred CCHHHHHHHHHhCCEEEee--CCHHHH--HHHHcCCCEEEEECCCChhhcC
Confidence 8889999999999999833 233222 3668999999999988776643
No 443
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.29 E-value=3 Score=47.91 Aligned_cols=411 Identities=12% Similarity=0.027 Sum_probs=228.2
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHH
Q 002431 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM---RKGRLNEAAQCC 124 (922)
Q Consensus 48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~ 124 (922)
.-++=+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 34445556666667777777888888888888888888777777777777777777765544332 236677777788
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhhCC-------CcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 125 RQALALNPLLVDAHSNLGNLM-------KAQGLVQEAYSCYLEALRIQP-------TFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 125 ~~~l~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
++++.-. +.+..|...+... ...++++.....|.+++..-. .....+..+-..|...-..++.+.
T Consensus 174 ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a 252 (881)
T KOG0128|consen 174 EKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIA 252 (881)
T ss_pred HHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8877532 3334444443333 344567777777777776421 122334444555555555566667
Q ss_pred HHHHHHhcCCCCHHHH----HHHH---HHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHHhHHHHHHHcCChHHH
Q 002431 191 YYKEAVKLKPTFPDAY----LNLG---NVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~----~~l~---~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A 255 (922)
++...+... -+.++. .... .......+++.|..-+.+.+ +..+. ...|..+.......|....-
T Consensus 253 ~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 253 LFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 776666543 222211 1111 11122334444444433332 22232 45566677777778888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCC-hhHHHHHHHHHHhc
Q 002431 256 ILYYKQAIGCDPRFLEAYNNLGNALK-DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-LPAAASYYKATLAV 333 (922)
Q Consensus 256 ~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~ 333 (922)
...++++....+.+...|...+..+- .++-.+.+...+.+++..+|-....|-..-..+.+.+. ...-...+.+.+..
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 88888888766666777776665442 23334455556666666666555444433322322222 11222222332221
Q ss_pred CCCCchhhhhHHHHHH-Hc-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 002431 334 TTGLSAPFNNLAVIYK-QQ-------------GNYADAISCYNEVLRI-DPLAADGLVNRGNTYK-EIGRVTDAIQDYIR 397 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~-~~-------------g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 397 (922)
.-. +.+....|. .. ..+..|...|...... -......+-..|.... .+++.+.|..++..
T Consensus 412 ~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~ 487 (881)
T KOG0128|consen 412 TVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF 487 (881)
T ss_pred HHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 100 111111111 11 2244444444444333 1122334444444444 35788889888888
Q ss_pred HHhhCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHhhcccCChhhHhHHHH
Q 002431 398 AITIRPTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPDFP---EATCNLLHTLQCVCSWEDRDRMFS 464 (922)
Q Consensus 398 al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 464 (922)
.+.....+.. .|.....+-...|+...++.++++++..--++. .++..+.....+.|.|+.......
T Consensus 488 imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 488 IMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred cccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 8877655554 788888888888999999998888887533332 233344445566677766554433
No 444
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=2.8 Score=48.25 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCH
Q 002431 40 GAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-RPNFADAWSNLASAYMRKGRL 117 (922)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 117 (922)
...+++..-|+-|+.+.+.- ..+++ -.......|.-+++.|++++|...|-+.+.. +|... ..-+....+.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHH
Confidence 34455566666666655432 12222 2455666677777777777777777776653 22211 1112223333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 156 (922)
.+-..+++.+.+..-.+.+--..|-.+|.++++.++-.+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 334444555555444444444555666666666655433
No 445
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.17 E-value=0.11 Score=54.36 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=56.0
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~ 821 (922)
+.++++.|.+.. .+..+......+- ...+.+.|..+..+...+++.+|+++.+-. | +.-+ |.++|+|+|++-|.
T Consensus 153 ~~~ivl~g~~~e-~~~~~~i~~~~~~-~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds--g-~~Hl-A~a~~~p~i~l~g~ 226 (279)
T cd03789 153 GARVVLTGGPAE-RELAEEIAAALGG-PRVVNLAGKTSLRELAALLARADLVVTNDS--G-PMHL-AAALGTPTVALFGP 226 (279)
T ss_pred CCEEEEEechhh-HHHHHHHHHhcCC-CccccCcCCCCHHHHHHHHHhCCEEEeeCC--H-HHHH-HHHcCCCEEEEECC
Confidence 677888876543 5555554444432 244667888888999999999999995432 2 2223 35899999999998
Q ss_pred cchhhhH
Q 002431 822 KMATRVA 828 (922)
Q Consensus 822 ~~~~r~~ 828 (922)
+...+.+
T Consensus 227 ~~~~~~~ 233 (279)
T cd03789 227 TDPARTG 233 (279)
T ss_pred CCccccC
Confidence 7777654
No 446
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.14 E-value=0.049 Score=45.97 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+|..+++.||+-+|+++.+..+...+++. ..+...|.++..+. .+.+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHH---------
Confidence 68889999999999999999998887765 34445555554332 2222222222222
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (922)
-.+++.|.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566777777777777777777777666666777777777777654
No 447
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.03 E-value=0.012 Score=38.30 Aligned_cols=32 Identities=22% Similarity=0.592 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.+++.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666667777777777666666653
No 448
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.02 E-value=0.33 Score=52.13 Aligned_cols=168 Identities=18% Similarity=0.028 Sum_probs=80.4
Q ss_pred HhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---H
Q 002431 26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA---D 102 (922)
Q Consensus 26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 102 (922)
+..+|.+.+++..++.++..+|+.+.|.+++++++-.........+.....-...|. +. .--..+.|. .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~r-----L~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CR-----LDYRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cc-----cCCccccchHHHH
Confidence 456777788888888888888888888888777753211000000000000000000 00 000011122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHH
Q 002431 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPL-LVDAHSNLG-NLMKAQGLVQEAYSCYLEALRIQPT-----FAIAWSNL 175 (922)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 175 (922)
+.......+.+.|-+..|.++.+-++.++|. |+-...... ....+.++++--++.++........ -+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3344455555666666666666666666665 444333222 2333445555444444443331110 12234445
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 002431 176 AGLFMESGDL---------------NRALQYYKEAVKLKPT 201 (922)
Q Consensus 176 a~~~~~~g~~---------------~~A~~~~~~~l~~~p~ 201 (922)
+.++...++. ++|...+.+++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 5555555555 6777777777766554
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.7 Score=42.29 Aligned_cols=120 Identities=16% Similarity=0.066 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c--HHHHHHHHHHHHHcCCH
Q 002431 44 YQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--F--ADAWSNLASAYMRKGRL 117 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~ 117 (922)
.+.++.++|+..|..+-+.+-.. .-+....+.+..+.|+...|+..|..+-...|- - ..+...-+..+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34444555555555444333221 223344455555555555555555554433221 0 11223334444455555
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 118 NEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 118 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
++.....+.+-. .+|-...+.-.||....+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 554444443321 1233334445555555555555555555555444
No 450
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.01 E-value=4.5 Score=47.33 Aligned_cols=399 Identities=12% Similarity=0.001 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH-
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASA- 110 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~- 110 (922)
...+.-+.-..+.|++..+.....++ +..|-. .|..........+ .++ -+...++..|+.+..-......
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~--~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLY--PYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcH--hHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHH
Confidence 34566777788888888876665543 333332 2222222222222 333 3344455566655443333332
Q ss_pred --HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 111 --YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 111 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
+.+.+++..-+.++ ...|.+....+.++......|+.++|.....++.......+.....+-..+.+.|.....
T Consensus 107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 23455555554422 234778888888888888999988887777777665544444444444444444433332
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-----------HH-cCChHHHHHHHHHHHhhCCC--hhHHHhHHHHHHHcCChHH
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVY-----------KA-LGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADM 254 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 254 (922)
...-+--+.....+......+...+ .. ..+...+...+.. ..++ ......++..-....+.+.
T Consensus 183 d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 183 AYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2111111111111111111111111 11 1111111111111 1122 1122223333345566778
Q ss_pred HHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002431 255 AILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330 (922)
Q Consensus 255 A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 330 (922)
|...+.+......-.. .++..++.-....+...+|...+..+.... .+.+..-.........++++.+...+..+
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 8888877643332221 233344444444332566667666654332 23333444444555788888887777776
Q ss_pred HhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCH---HHH-HHHHHHHHhhCCCcH
Q 002431 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV---TDA-IQDYIRAITIRPTMA 406 (922)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A-~~~~~~al~~~p~~~ 406 (922)
-..........+-+|..+...|+.++|...|+++.. +.+ .|-.++. .++|.. ... ...-...+..
T Consensus 339 ~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa--~~Lg~~~~~~~~~~~~~~~~~~~----- 407 (644)
T PRK11619 339 PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAA--QRLGEEYPLKIDKAPKPDSALTQ----- 407 (644)
T ss_pred CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHH--HHcCCCCCCCCCCCCchhhhhcc-----
Confidence 554455667778888888888999999999988754 222 1112211 112221 000 0000011111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
.-....+..+...|+...|...+..++.. . ++.....+.......|.+.-+.
T Consensus 408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 408 GPEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHH
Confidence 12355677888999999999999988875 2 3344444444444555444443
No 451
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.99 E-value=0.52 Score=46.20 Aligned_cols=17 Identities=6% Similarity=0.300 Sum_probs=12.2
Q ss_pred cccceeeeecCCCCCCh
Q 002431 534 LRRLRVGYVSSDFGNHP 550 (922)
Q Consensus 534 ~~~~rig~~s~~~~~h~ 550 (922)
-.+++|-|+|..++-.+
T Consensus 362 Yt~i~Ipfis~~Lnv~~ 378 (440)
T KOG1464|consen 362 YTNIGIPFISKELNVPE 378 (440)
T ss_pred ccccCchhhHhhcCCCH
Confidence 35678888888777654
No 452
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.98 E-value=0.058 Score=58.58 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEecCC-CCCCCH-HHHHHHHHHHhhCCCeEEEEecCChhhH-HHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 707 YGLPEDKFIFACFNQ-LYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGE-MRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 707 ~~l~~~~~~~~~~~~-~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~-~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
+|++...+++....+ ..|.-| +-+....+.+.. .+..+++.|.+...+ ...++..+...- ...+.+.|.++-.+.
T Consensus 179 ~~~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~e~e~~~~~~i~~~~~~-~~~~~l~g~~sL~el 256 (352)
T PRK10422 179 LGVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPDKDDLACVNEIAQGCQT-PPVTALAGKTTFPEL 256 (352)
T ss_pred cCCCCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCChHHHHHHHHHHHhcCC-CccccccCCCCHHHH
Confidence 345555555554433 456643 222233333332 256777776543212 222333322221 234668899899999
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.++++.+|+||.. -+|++=+ |-++|+|||++-|++...+.+
T Consensus 257 ~ali~~a~l~v~n--DSGp~Hl--AaA~g~P~v~lfGpt~p~~~~ 297 (352)
T PRK10422 257 GALIDHAQLFIGV--DSAPAHI--AAAVNTPLICLFGATDHIFWR 297 (352)
T ss_pred HHHHHhCCEEEec--CCHHHHH--HHHcCCCEEEEECCCCccccC
Confidence 9999999999933 3343333 557899999999988776654
No 453
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.96 E-value=0.011 Score=38.12 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
No 454
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.87 E-value=0.05 Score=59.01 Aligned_cols=111 Identities=7% Similarity=-0.097 Sum_probs=66.0
Q ss_pred CcEEEEecCC--CCCCCH-HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCC-CCc-eEEcCCCCcHHHHHh
Q 002431 712 DKFIFACFNQ--LYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQ-IIFTDVAMKQEHIRR 786 (922)
Q Consensus 712 ~~~~~~~~~~--~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~-~~r-v~f~~~~~~~~~~~~ 786 (922)
..++|...++ ..|.-| +-+....+-+. ..+.++++.|.+.. ++..++..+..+-. ..+ +.+.|..+-.+..++
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~-~~~~~vvl~Gg~~e-~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLI-DEGYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHH-HCCCeEEEEeCHHh-HHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 3455555443 456633 33333333233 23567777775433 44444444433211 112 567888888999999
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
++.+|+++-. -+|++= =|-++|+|+|++=|++...+.|
T Consensus 259 i~~a~l~I~n--DTGp~H--lAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 259 IAACKAIVTN--DSGLMH--VAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHhCCEEEec--CChHHH--HHHHhCCCEEEEECCCCccccC
Confidence 9999999832 233222 3778999999999987665554
No 455
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.92 Score=41.55 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHHhHHHHHHHcCCh
Q 002431 180 MESGDLNRALQYYKEAVKLKPTF-P-DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQA 252 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 252 (922)
.+.++.++|+..|...-+.+-.. + -+....+.+....|+...|+..|.++-...+. ..+...-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566677777777665544332 2 24566677777778888888888877665443 23344555666777777
Q ss_pred HHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH
Q 002431 253 DMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313 (922)
Q Consensus 253 ~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (922)
++.....+.+- ..+|-...+...||..-.+.|++.+|.+.|.++.. +...+....+.+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 77666665544 33455555667777777888888888888877665 43444444444433
No 456
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.85 E-value=0.43 Score=46.74 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (922)
.+.++|+..|++.+++.+...+ ++-.+..++++++++++....|.+++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666666666554332 444555666666666666666665543
No 457
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.84 E-value=0.0079 Score=39.85 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+.+||.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664433
No 458
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.77 E-value=0.58 Score=50.34 Aligned_cols=58 Identities=19% Similarity=0.029 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNV-YKALGMPQEAIMCYQR 228 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 228 (922)
+.......+.+.|-+..|.++.+-++.++|. ++-........ ..+.++++--++.++.
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3344555666666677777777666666666 55433333333 3344555444444443
No 459
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.72 E-value=0.39 Score=52.76 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=110.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhh------------CC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----c
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYER------------NP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----F 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~------------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 66 (922)
.+|...+..=+++-|.+.|.++-.. .. ....--..++..+.-.|++.+|.++|.+.-..+.. .
T Consensus 590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT 669 (1081)
T KOG1538|consen 590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT 669 (1081)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH
Confidence 3555556666666666666554211 10 11122355677777788888888887653211100 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHHhCCCC
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCC----------RQALALNPLL 134 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~----------~~~l~~~p~~ 134 (922)
.--.+..++-+...|.-++-..+.++-.+- +-+.+. ..+.++...|+.++|+.+. +-.-+++...
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 011233444555555554444444332211 111111 2355666677777766543 1222233444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
.+.+...+..+.+...+.-|.++|.++-.. ..+.++....+++.+|..+.++.-+.. +++|+..++.+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 455556666666666666666666554321 234455666677777776665543322 335666677777
Q ss_pred HcCChHHHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRA 229 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~ 229 (922)
...++++|.+.|.++
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 777777776666544
No 460
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.51 Score=43.21 Aligned_cols=82 Identities=26% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
+......-...++.+++..++..+--..|+.+..-..-|..+...|++.+|+.+++.+.+..|..+.+--.++.|+...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33444444555555555555555555556655555555566666666666666666655555555555555555555555
Q ss_pred CH
Q 002431 116 RL 117 (922)
Q Consensus 116 ~~ 117 (922)
+.
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 43
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.65 E-value=4.1 Score=44.13 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 002431 52 CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR-LNEAAQCCRQALAL 130 (922)
Q Consensus 52 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 130 (922)
-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|..++.+.++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34556666666666777777776666666667777777777777777777777776666665554 67777777777777
Q ss_pred CCCCHHHHHHH
Q 002431 131 NPLLVDAHSNL 141 (922)
Q Consensus 131 ~p~~~~~~~~l 141 (922)
+|+.+..|...
T Consensus 170 npdsp~Lw~ey 180 (568)
T KOG2396|consen 170 NPDSPKLWKEY 180 (568)
T ss_pred CCCChHHHHHH
Confidence 77777665443
No 462
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.61 E-value=4.2 Score=44.03 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=124.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|-+..++..+..++...-+..-......+++.... +..++..++++|... ..++-..++++..+.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 33444555555555555555666666666666543 355667777777666 4455566666666666666665566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
.|.+ ++.+.+...|.+++...-. ..+...-.+.+++....-+++.+..+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~--------------~~q~~~i~evWeKL~~~i~dD~D~fl~l-------------- 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIP--------------RRQNAAIKEVWEKLPELIGDDKDFFLRL-------------- 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcc--------------hhhhhhHHHHHHHHHHhccccHHHHHHH--------------
Confidence 6555 6666666666666543111 1112222344455544444444332222
Q ss_pred HHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
..++...... ..++..+-.-|....++++|++.+...++.+..+..+.-.+...+...-+ +
T Consensus 192 --~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~ 255 (711)
T COG1747 192 --QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------G 255 (711)
T ss_pred --HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------c
Confidence 1222111111 23333344556677888999999988888888877776666655543110 1
Q ss_pred CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchh
Q 002431 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 340 (922)
..+.+-|....++-..-.++.++..-|++.+.....+-..
T Consensus 256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVf 295 (711)
T COG1747 256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVF 295 (711)
T ss_pred chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEE
Confidence 1112222233333334456777777777777776665433
No 463
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.53 E-value=0.21 Score=59.93 Aligned_cols=190 Identities=13% Similarity=0.056 Sum_probs=115.7
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCe----EEEEecCChh----hHHHHH----HHHH----H
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNS----ALWLLRFPAA----GEMRLR----AYAV----A 764 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~----~~~~l~----~~~~----~ 764 (922)
+|++++- ++..++.++-|+. |+++.=+.+|.++|++.|.- +|+.+..++- .-+.++ +.+. +
T Consensus 330 l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~ 408 (854)
T PLN02205 330 LIKQFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINET 408 (854)
T ss_pred HHHHhcc-CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4544431 2457888999875 99999999999999999964 5555543321 012222 2222 2
Q ss_pred cCC-CCCceEEcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeee------------ecCCcchhhhH-
Q 002431 765 QGV-QPDQIIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT------------LPLEKMATRVA- 828 (922)
Q Consensus 765 ~g~-~~~rv~f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~------------~~~~~~~~r~~- 828 (922)
.|- +-.-|++.. .++..+..++|+.+||+|-|+.-.| ..+.-|-.+|-.+--. ..|.-.-|...
T Consensus 409 fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaG 488 (854)
T PLN02205 409 FGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIG 488 (854)
T ss_pred cCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccc
Confidence 342 112366664 5788999999999999999999888 8899999887542100 01111122222
Q ss_pred HHHHHhcCCCCccc--cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 829 GSLCLATGLGEEMI--VNSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 829 ~~~~~~~g~~~~~i--~~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
++- -|++.++ ..|.++.++++.+-++ .++.++.--+.+++.+.+ .|...+++.+-...+.+++.+
T Consensus 489 aa~----~L~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~---~d~~~W~~~fl~~l~~~~~~~ 556 (854)
T PLN02205 489 CSP----SLSGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST---HDVGYWARSFLQDLERTCRDH 556 (854)
T ss_pred hhH----HhCcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHH
Confidence 111 1112122 2588888776655554 444444444455565543 788898888877777766543
No 464
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.53 Score=51.27 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLV 92 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (922)
...+.+.......|+++...+..+..+...|+.+.|+..++..++ +. ..-.++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444555666666666667777777776666666666655 22 133556666666667777777777776
Q ss_pred HHhcCCCcHHHHHHHH
Q 002431 93 AIELRPNFADAWSNLA 108 (922)
Q Consensus 93 al~~~p~~~~~~~~la 108 (922)
..+.+.-..-.|..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 6665444333333333
No 465
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.45 E-value=0.03 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
+++.+|.++.+.|++++|++.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777776665
No 466
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.33 E-value=0.37 Score=49.05 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=98.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhh---HHHHHHHHHHcCCCCCceEE-cCCCCcHHHHHhcc
Q 002431 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAG---EMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSS 788 (922)
Q Consensus 714 ~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~---~~~l~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~~ 788 (922)
+.+|.-+-+.-+|-+.++...+.. ..+.++++ +|.|+.. .+++++...++.- ++++.. ...+|.++|+++++
T Consensus 149 IlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 149 ILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred EEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHHHHHH
Confidence 456666666777877776655543 45566655 3553222 3456666666654 366555 55889999999999
Q ss_pred CCcEEecCCC-CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002431 789 LADLFLDTPL-CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 789 ~~dv~l~~~~-~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
.||+....+. -.|--|++=.+.+|+|||.....++- ..+...|+|- +...+ ..-...+ .+..+++.
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw-----qdl~e~gv~V-lf~~d--~L~~~~v-----~e~~rql~ 292 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW-----QDLTEQGLPV-LFTGD--DLDEDIV-----REAQRQLA 292 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH-----HHHHhCCCeE-EecCC--cccHHHH-----HHHHHHHH
Confidence 9999998875 45556677899999999976655443 3466778876 43322 2211111 11222223
Q ss_pred HHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 868 NKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
..=++.+ .|+.+.+++.+.+++..
T Consensus 293 ~~dk~~I----~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 293 SVDKNII----AFFSPNYLQGWRNALAI 316 (322)
T ss_pred hhCccee----eecCHhHHHHHHHHHHH
Confidence 3223332 28888877666666654
No 467
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.28 E-value=0.062 Score=53.34 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 379 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+.-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+-
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 33456778999999999999999999999999999999999999999999999999999998887654
No 468
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.27 E-value=0.047 Score=54.18 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=52.0
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34567788888888888888888888888888888777778888888888888888877777665543
No 469
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.53 Score=51.77 Aligned_cols=169 Identities=20% Similarity=0.203 Sum_probs=105.2
Q ss_pred cEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCChhhH----HHHHHHHH--------HcCC-CCCceE
Q 002431 713 KFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAAGE----MRLRAYAV--------AQGV-QPDQII 773 (922)
Q Consensus 713 ~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~----~~l~~~~~--------~~g~-~~~rv~ 773 (922)
..++.++-|+. |+.+.=+.+|.++|...|. ++|+-++.++... .+++.... +.|- +-.=|.
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 56777888774 9999999999999999885 4555555432111 12222222 2343 111255
Q ss_pred EcC-CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC----CeeeecCCcchhhhHHHHHHhcCCCCcccc--CC
Q 002431 774 FTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATGLGEEMIV--NS 845 (922)
Q Consensus 774 f~~-~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~----Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~ 845 (922)
|.- ..++.+++++|..+||++-|+.-.| .++..|-.++-- |.|...-..-++ .| .+.+++ .|
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~-----~L-----~~AliVNP~d 431 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAAS-----EL-----RDALIVNPWD 431 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchh-----hh-----ccCEeECCCC
Confidence 555 4788999999999999999999888 888888887633 333222111111 11 111332 36
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 846 ~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.++.++++.+-++ .++.+.+.-+.+.+.+.+ .|...++..+.....
T Consensus 432 ~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~---~d~~~W~~~fl~~la 478 (486)
T COG0380 432 TKEVADAIKRALTMSLEERKERHEKLLKQVLT---HDVARWANSFLDDLA 478 (486)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHH
Confidence 6666555444333 666666656666666654 888899888666554
No 470
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=4.1 Score=40.61 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPNFADA 103 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 103 (922)
..+++-..+.+++++|+..|.+.+..... ...+...++..|...|++..-.+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 55677788889999999999999876322 2456778899999999876544444332221 1222222
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHH
Q 002431 104 WSNLASAYM-RKGRLNEAAQCCRQALALNPLLV------DAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAI 170 (922)
Q Consensus 104 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 170 (922)
...+...+- ....++.-++++...++.....- ..-..++.++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222222211 12334444444444443221111 12234555666677777776665544331 233334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYL--NLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.+..-..+|.+..+..++...+..+... .|....+.. .-|...+...+|..|..+|-++++-
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 4445555666666666555555544332 122222111 1233344455666666666666653
No 471
>PRK10941 hypothetical protein; Provisional
Probab=94.94 E-value=0.21 Score=50.90 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
..++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3455566777777777777777777777777777777777777777777777777777777777665433
No 472
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.92 E-value=0.3 Score=41.31 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALALNPLLV---DAHSNLGNLMKAQGL-----------VQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
+..++..|++-+|+++.+.++..++++. ..+...|.++.++.. .-.+++.|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 3344555555555555555555544433 222333333322111 12344445555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+|.-+-....|+++..-.++.+.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555444444444444444444443
No 473
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=5.2 Score=41.06 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=98.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhh--CCCc--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--CcH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYER--NPLR--------TDNLLLLGAIYYQLHDYDMCIARNEEALRL---EP--RFA 67 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~~ 67 (922)
++.++......++++++..+..++.. .|.+ ......++..+.+.|+.++-.......-.. -+ ..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45677778888899999999999873 2222 345677888899998887766655544221 11 111
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCC
Q 002431 68 ECYGNMANAWKE-KGDIDLAIRYYLVAIELRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALAL----N--PLL 134 (922)
Q Consensus 68 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~--p~~ 134 (922)
.....+...... .+..+.-+.+...+++..... ...-..++..|...++|.+|+......++. + +..
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 112222222211 222333333443333321111 112234566666666676666665555432 1 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRI-----QPTFAIAWS--NLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+++..-...|....+..+|...+..+-.. .|....+-. .-|.+++...+|..|..+|-++++
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 334445555566666666666555544332 121111111 112333444556666666665554
No 474
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.90 E-value=0.2 Score=41.37 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHhhcccC
Q 002431 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCVC 454 (922)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~ 454 (922)
+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.++++ ..+...++......|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 344556666666666666666666666666666666666666665544 344444444443333
No 475
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=12 Score=45.08 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
..++.-+..++++-+|.+.....+..- ......|++...+++|+....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~-------~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDP-------EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCH-------HHHHHHHhhHhHHHHHHHHHHh
Confidence 445555556666666665555544321 1122334444455555554443
No 476
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.83 E-value=0.5 Score=43.23 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...-...++.+++..++..+-...|+.++.-..-|..+...|+|.+|+.+|+.+....|..+.+--.++.|+...|+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555544444
No 477
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.79 E-value=0.1 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=15.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNL 36 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 36 (922)
+.+|..+++.|+|++|.+..+.+++..|++.++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444444555555555555555555555444443
No 478
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.76 E-value=0.33 Score=40.09 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCC
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGD 82 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 82 (922)
+..+++.+..+|++..+.+.++..+...|++++|++.+-.+++.++.. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666777777777777777777777777777777777666543 3344444444444443
No 479
>PRK10941 hypothetical protein; Provisional
Probab=94.74 E-value=0.19 Score=51.13 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 5667788899999999999999999999999999999999999999999999999999999999998764
No 480
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.061 Score=35.58 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002431 375 LVNRGNTYKEIGRVTDAIQDYIRAI 399 (922)
Q Consensus 375 ~~~l~~~~~~~g~~~~A~~~~~~al 399 (922)
+..+|.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666644
No 481
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.65 E-value=0.67 Score=53.22 Aligned_cols=147 Identities=13% Similarity=0.239 Sum_probs=90.7
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhCCCeE-EEEecCChhhHHHHHHHHHHcCCC---CCceEEcCCCCcHHHHH
Q 002431 713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGVQ---PDQIIFTDVAMKQEHIR 785 (922)
Q Consensus 713 ~~~~~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~~---~~rv~f~~~~~~~~~~~ 785 (922)
.+||.||+... ..........+..+...|+.. +|....... .. + ..|+. ...|.+.++.|..+.+.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~-~~-~-----~~~~~~~~~~nV~~~~W~PQ~~lll 350 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS-IY-F-----PEGLPNRGRGNVVLSKWAPQNDLLL 350 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc-hh-h-----hhcCCCCCcCceEEecCCCcHHHhc
Confidence 58888888776 789999999888888887765 566654322 11 1 12341 24599999999998773
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeec--CCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHH
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~--~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~ 861 (922)
....+..|+ .++|=++++||++.|||+|+.+ |+.+.. +..+...|....++-. +.++...++..+..+++
T Consensus 351 ~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 351 DHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred CCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 344455555 4677677799999999999654 443322 2223333332201111 22235666677777777
Q ss_pred HHHHHHHHHHh
Q 002431 862 KLQALTNKLKS 872 (922)
Q Consensus 862 ~~~~~~~~~~~ 872 (922)
.....++-...
T Consensus 425 y~~~~~~l~~~ 435 (496)
T KOG1192|consen 425 YKEAAKRLSEI 435 (496)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 482
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.64 E-value=0.16 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002431 71 GNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102 (922)
Q Consensus 71 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (922)
+.+|..+++.|+|++|.++.+.+++..|++.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34444444444444444444444444444433
No 483
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=94.63 E-value=0.29 Score=52.19 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChh
Q 002431 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 803 (922)
Q Consensus 724 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~ 803 (922)
+..|.+++++.++.++. .++++.+... .+.+++...+. ..+.|.+ +-...++.+|+++ ...||
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~--~~~i~~~~~~~----~~~~~~~-----~~~~~m~~aDlal----~~SGT 245 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFFK--GKDLKEIYGDI----SEFEISY-----DTHKALLEAEFAF----ICSGT 245 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCCc--HHHHHHHHhcC----CCcEEec-----cHHHHHHhhhHHH----hcCcH
Confidence 66788888888877653 5566655432 35555544332 1334443 2235678899988 55688
Q ss_pred HHHHHHHcCCCeeee
Q 002431 804 TGTDILWAGLPMITL 818 (922)
Q Consensus 804 t~~eal~~g~Pvv~~ 818 (922)
+|+|++.+|+|.|..
T Consensus 246 ~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 246 ATLEAALIGTPFVLA 260 (347)
T ss_pred HHHHHHHhCCCEEEE
Confidence 888999999998863
No 484
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.62 E-value=11 Score=43.54 Aligned_cols=412 Identities=12% Similarity=0.038 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWK---EKGDIDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~ 91 (922)
-++=+..+++-+..++.+......|..++...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3444566666677788888888999999999999998888888888888888888776655433 3467788899999
Q ss_pred HHHhcCCCcHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 92 VAIELRPNFADAWSNLASAY-------MRKGRLNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 92 ~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
+++... +++..|...+... ...++++.-..+|.+++..-. .....+..+-..+...-..++-+.+
T Consensus 175 kal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 998643 3344454444433 445678888888888876421 2333455555555555555667777
Q ss_pred HHHHHhhCCCcHH----HHHHHH--H-HHHHcCCHHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 002431 158 YLEALRIQPTFAI----AWSNLA--G-LFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 158 ~~~al~~~p~~~~----~~~~la--~-~~~~~g~~~~A~~~~~~-------~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 223 (922)
+...+... -+.. .|.... . ......+++.|.+-+.+ .+...+.....+..+.......|....-.
T Consensus 254 ~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred HHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 77666543 2211 111111 1 11223445555444333 33334444456777777788888888888
Q ss_pred HHHHHHHhhCCC-hhHHHhHHHHH-HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 002431 224 MCYQRAVQTRPN-AIAFGNLASTY-YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-VDEAIQCYNQCLSLQ 300 (922)
Q Consensus 224 ~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 300 (922)
..++++....+. ...|...+... ...+-.+.+...+.+++...|-...+|...-..+.+.+. ...-...+.+.+...
T Consensus 333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~ 412 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT 412 (881)
T ss_pred HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 888888776554 44444333322 123334445556666666666666555443333333222 222223333332221
Q ss_pred CCChHHHHhHHHHHHHc-------------CChhHHHHHHHHHHhc-CCCCchhhhhHHHHHH-HcCCHHHHHHHHHHHH
Q 002431 301 PSHPQALTNLGNIYMEW-------------NMLPAAASYYKATLAV-TTGLSAPFNNLAVIYK-QQGNYADAISCYNEVL 365 (922)
Q Consensus 301 p~~~~~~~~la~~~~~~-------------~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 365 (922)
- ..++........+ ..+..|...|...... .......+...|..+. .+++.+.++.+++..+
T Consensus 413 ~---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~im 489 (881)
T KOG0128|consen 413 V---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIM 489 (881)
T ss_pred H---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 0 0111111111111 1233444444443333 1122233444555544 5678999999999888
Q ss_pred ccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002431 366 RIDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTM-AEAHANLASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 366 ~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (922)
...-.+.. .|+.....-...|+...+...+++|+... |++ -.++..+-......|.++.....-++
T Consensus 490 ty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 490 TYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred cCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 77666555 78888888888899999999888888653 432 23444444555556666665554443
No 485
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=94.61 E-value=0.057 Score=51.38 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=60.3
Q ss_pred CceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCcccc---
Q 002431 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIV--- 843 (922)
Q Consensus 770 ~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~--- 843 (922)
.+|.+.++.+ +...++..+|+++ ..+|+.|+.|++++|+|.|..+-... ....-+..+...|... .+.
T Consensus 55 ~~v~~~~~~~--~m~~~m~~aDlvI---s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVD--NMAELMAAADLVI---SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESE 128 (167)
T ss_dssp CCCEEECSSS--SHHHHHHHHSEEE---ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC
T ss_pred CcEEEEechh--hHHHHHHHcCEEE---eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCccc
Confidence 5789999866 3444567799988 34667899999999999998776651 2222334566667655 443
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 844 NSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
.+++.+.+.+..+..++..+..+...
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 24667888889998888876554443
No 486
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.52 E-value=1.3 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
...++.+++..++..+-...|+.++.-..-|.++...|+|.+|+.+|+...+..+..+...-.++.|+.-+|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3345555555555555445555555555555555555555555555555544444444444444444444443
No 487
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=12 Score=43.38 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=134.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNPL-RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
...+++..-|+-|+.+.+.-- .++. -.......|.-++..|++++|...|-+.+..-.... ...-|.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhcCHHHHH
Confidence 456778888888888776532 2222 245667788999999999999999998876432211 111223333444
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
+-..+++...+..-.+.+--..|..+|.+.++.++-.+..++.- .+.-.. -.-..-.++.+.+-.++|..+-.+.-.
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~f-d~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFF-DVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceee-eHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 45556666666555555566778899999999887766655432 110000 011222445555555666554433221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-C--hhHH-
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-N--AIAF- 239 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~--~~~~- 239 (922)
+.. .+-.++...++|++|+.++..+ .|.. .......|..+.. ..+++-...+-+...... . ....
T Consensus 492 ---he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s 561 (933)
T KOG2114|consen 492 ---HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLS 561 (933)
T ss_pred ---CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 222 2334566778899999988764 2221 2234455555544 344555555444443211 1 1100
Q ss_pred ---HhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 240 ---GNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 240 ---~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
...-.+..-.+++..-..+++.+.+..|+..
T Consensus 562 ~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 562 NIPDSIEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred cCccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 1122223334556665566665665555544
No 488
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.06 E-value=0.18 Score=48.20 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=45.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445677777777777777777777777777777777777777777778887777776543
No 489
>PF13041 PPR_2: PPR repeat family
Probab=93.97 E-value=0.23 Score=35.75 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
+..+|..+...|.+.|++++|.++|+++.+.+-.+....++.+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356788899999999999999999999999887766666665543
No 490
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=9.5 Score=39.27 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRL--EPR--------FAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
...+......+++++++..+...+.. .+. .......++..|.+.|+.++-.......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 45566666777788899999888874 222 1356778899999999888766655543
No 491
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=2.7 Score=46.46 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCChHHHHh--HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHH-HH
Q 002431 289 AIQCYNQCLSLQPSHPQALTN--LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE-VL 365 (922)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 365 (922)
++..+...+..++.+++.... +...+...+....+...+...+..+|++..+..+++......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444456666654332 345555566666677777777777777777777777777666666655555555 66
Q ss_pred ccCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 366 RIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 366 ~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
...|.+......+ +.....+|+..++....+++.+..|.++.+...+.....+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 6677776655444 77777778888888888888888888776666655554333
No 492
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.52 E-value=1.1 Score=38.24 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=36.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhC---CC---------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERN---PL---------RTDNLLLLGAIYYQLHDYDMCIARNEEAL 60 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al 60 (922)
+..|...++.|-|++|...+.++.+.. |. +..++-.|+..+..+|+|++++...++++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345666777888888888888877532 21 24455667777777777777776665554
No 493
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.45 E-value=1.6 Score=38.36 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHD---YDMCIARNEEALR-LEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+.+..+.++.++.+..+ ..+.+.+++..++ ..|. .-++.+.++..+++.++|++++++.+..++..|+|.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46677888888877654 4567788888886 3443 4567788888888888888888888888888888776543
No 494
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.36 E-value=0.12 Score=32.53 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
++..+|.++...|++++|...|+++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555443
No 495
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.28 E-value=15 Score=40.13 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (922)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 281 (922)
+...+..+..++...-++.-...++.+++....+..++..++++|.+. ..++-...+++..+.+-++...-..++..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 334445555555555555555666666666666666666666666665 4455555666666555555544455555554
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 002431 282 DVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~ 299 (922)
+ ++.+++..+|.+++..
T Consensus 144 k-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 144 K-IKKSKAAEFFGKALYR 160 (711)
T ss_pred H-hchhhHHHHHHHHHHH
Confidence 4 5556666666665543
No 496
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.20 E-value=0.82 Score=40.05 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 370 LAADGLVNRGNTYKEIG---RVTDAIQDYIRAIT-IRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 370 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
-.....+++++++.+.. +..+.+.+++..++ -.|+ .-+..+.|+..+.+.|+|++|+++.+..++..|++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44567888888888765 45678889999987 4444 356788899999999999999999999999999987654
No 497
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.17 E-value=3.9 Score=36.88 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCC
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 421 (922)
.++.+++..++..+--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+.-+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444455555444444444444444444444444444444
No 498
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.16 E-value=3.1 Score=46.10 Aligned_cols=128 Identities=22% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (922)
..-.++++++.+..... +.-|.- ......++..+.++|..+.|++.-+ +++..+.| ..+.|+.+.|.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCHHHHH
Confidence 34455566655444311 111111 2234445555555666655555431 23333332 34566666665
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEA 195 (922)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (922)
+..++ .++...|..+|.....+|+++-|.++|+++-. +..+..+|...|+.+.-.++.+.+
T Consensus 339 ~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 339 EIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 54332 23455666666666666666666666655322 334445555555554444444433
No 499
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.96 E-value=12 Score=38.21 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=96.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
+.+...+..+..+-++.-..+++++|....+|..++.-- ..-..+|.++++++++.... .+...+.....|...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccch
Confidence 334444555666666667777777777777776665432 23456677777777664321 111111111111111
Q ss_pred HHHHHHHHHHhcCCCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 322 AAASYYKATLAVTTGLS--APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--ADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
+|. .+ ...+. .+...++.+..++|+..+|.+.++...+..|-. ...+-++...+....-|.+....+.+
T Consensus 264 da~------~r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 264 EAQ------LR-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhh------hh-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 01 11111 223456777777777888877777776665522 22344455555555444444444333
Q ss_pred HHhhC-CCcHHHHHHHHHH-------------HHhcCC---HHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 398 AITIR-PTMAEAHANLASA-------------YKDSGH---VEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 398 al~~~-p~~~~~~~~la~~-------------~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
.-++. |....+.+.-+.. -.+.|- -..|++...++++.+|.-|..+..
T Consensus 337 YDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 337 YDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred hccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 33332 3333332222211 112221 235788889999999987765543
No 500
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.78 E-value=2.7 Score=35.91 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred HcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCCCcH----
Q 002431 350 QQGNYADAISCYNEVLRIDPL------------AADGLVNRGNTYKEIGRVTDAIQDYIRAIT-------IRPTMA---- 406 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~---- 406 (922)
+.|-|++|...++++.+.... +.-.+..++..+..+|+|++++..-++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 445566666666666554211 122455566667777777766665555553 233332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 407 EAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
.+.++.+..+...|+.++|+..|+.+-+
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2345566666677777777777766544
Done!