Query 002431
Match_columns 922
No_of_seqs 1702 out of 4019
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 02:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 5E-113 2E-117 1000.6 68.0 609 300-913 5-722 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 5.3E-74 1.8E-78 629.9 36.6 352 532-903 271-630 (631)
3 2vsy_A XCC0866; transferase, g 100.0 4.2E-65 1.4E-69 595.0 63.7 558 283-902 2-565 (568)
4 2xpi_A Anaphase-promoting comp 100.0 3.6E-42 1.2E-46 405.4 49.3 447 2-451 87-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-41 4.6E-46 377.2 51.0 383 3-385 3-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-41 1.5E-45 373.2 51.3 382 39-420 5-387 (388)
7 2xpi_A Anaphase-promoting comp 100.0 7.6E-40 2.6E-44 385.6 48.0 436 31-469 82-579 (597)
8 3fp2_A TPR repeat-containing p 100.0 1.6E-36 5.3E-41 352.3 38.8 412 33-445 25-501 (537)
9 2gw1_A Mitochondrial precursor 100.0 5E-36 1.7E-40 345.9 40.1 442 2-446 9-489 (514)
10 2gw1_A Mitochondrial precursor 100.0 1.6E-35 5.4E-40 341.7 42.4 409 2-413 42-490 (514)
11 3fp2_A TPR repeat-containing p 100.0 2.4E-35 8.3E-40 342.2 33.9 399 66-469 24-491 (537)
12 2y4t_A DNAJ homolog subfamily 100.0 4.1E-33 1.4E-37 315.6 43.1 346 14-381 7-372 (450)
13 2y4t_A DNAJ homolog subfamily 100.0 4.4E-33 1.5E-37 315.4 41.0 325 2-347 29-372 (450)
14 3ieg_A DNAJ homolog subfamily 100.0 2.3E-30 7.8E-35 283.1 46.5 341 66-450 2-350 (359)
15 3ieg_A DNAJ homolog subfamily 100.0 1.9E-30 6.4E-35 283.7 45.8 345 32-420 2-354 (359)
16 4g1t_A Interferon-induced prot 100.0 7E-31 2.4E-35 299.3 38.9 389 33-446 51-470 (472)
17 4g1t_A Interferon-induced prot 100.0 1.4E-30 4.8E-35 296.8 38.9 389 2-414 54-472 (472)
18 2xm6_A Protein corresponding t 100.0 1.1E-26 3.8E-31 265.3 53.6 378 19-417 27-451 (490)
19 2ooe_A Cleavage stimulation fa 100.0 1.9E-27 6.5E-32 274.5 46.0 428 22-473 2-496 (530)
20 2ooe_A Cleavage stimulation fa 100.0 3.2E-27 1.1E-31 272.6 47.3 390 56-468 2-453 (530)
21 3hym_B Cell division cycle pro 100.0 2.3E-28 7.7E-33 263.9 34.8 293 22-314 11-314 (330)
22 3hym_B Cell division cycle pro 100.0 2.5E-28 8.5E-33 263.6 34.5 282 135-416 22-314 (330)
23 2xm6_A Protein corresponding t 100.0 5E-26 1.7E-30 259.8 53.4 379 51-450 25-450 (490)
24 1fch_A Peroxisomal targeting s 100.0 9E-28 3.1E-32 263.7 28.5 292 181-473 37-363 (368)
25 1fch_A Peroxisomal targeting s 100.0 8.1E-28 2.8E-32 264.1 27.5 306 42-366 34-358 (368)
26 4eqf_A PEX5-related protein; a 99.9 1.3E-26 4.4E-31 254.2 24.0 262 171-432 67-353 (365)
27 4eqf_A PEX5-related protein; a 99.9 3.9E-26 1.3E-30 250.4 26.5 266 67-365 65-354 (365)
28 3cv0_A Peroxisome targeting si 99.9 2.6E-25 9E-30 239.4 25.8 280 137-437 23-317 (327)
29 3cv0_A Peroxisome targeting si 99.9 4.9E-25 1.7E-29 237.3 27.8 270 32-301 20-317 (327)
30 2h6f_A Protein farnesyltransfe 99.9 3.7E-25 1.3E-29 240.1 26.8 255 27-282 91-365 (382)
31 2h6f_A Protein farnesyltransfe 99.9 5E-25 1.7E-29 239.0 25.6 251 165-416 93-363 (382)
32 3e4b_A ALGK; tetratricopeptide 99.9 6.1E-24 2.1E-28 238.5 26.5 350 38-440 8-392 (452)
33 1xi4_A Clathrin heavy chain; a 99.9 1.4E-21 4.8E-26 229.9 44.1 402 5-453 991-1414(1630)
34 3mkr_A Coatomer subunit epsilo 99.9 6.2E-23 2.1E-27 215.5 29.6 261 177-444 7-273 (291)
35 3e4b_A ALGK; tetratricopeptide 99.9 1.2E-23 4.1E-28 236.1 25.2 377 3-437 7-423 (452)
36 3mkr_A Coatomer subunit epsilo 99.9 1E-22 3.5E-27 213.9 30.2 259 5-271 5-270 (291)
37 3u4t_A TPR repeat-containing p 99.9 3E-23 1E-27 216.8 25.5 248 205-452 5-267 (272)
38 2pl2_A Hypothetical conserved 99.9 3.2E-23 1.1E-27 208.0 24.5 200 30-230 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.9 7.1E-23 2.4E-27 211.9 26.4 237 204-448 6-255 (258)
40 2pl2_A Hypothetical conserved 99.9 4.8E-23 1.6E-27 206.7 23.3 196 236-432 5-211 (217)
41 3u4t_A TPR repeat-containing p 99.9 6E-23 2.1E-27 214.6 25.0 244 34-278 4-263 (272)
42 3uq3_A Heat shock protein STI1 99.9 1.9E-22 6.3E-27 208.8 27.1 225 33-266 5-237 (258)
43 1xi4_A Clathrin heavy chain; a 99.9 4.5E-20 1.5E-24 217.3 46.1 384 32-462 984-1377(1630)
44 3okp_A GDP-mannose-dependent a 99.9 1.9E-23 6.5E-28 231.5 14.4 346 535-901 3-384 (394)
45 3sf4_A G-protein-signaling mod 99.9 1.2E-22 4.3E-27 225.8 20.7 297 100-422 8-363 (406)
46 3sf4_A G-protein-signaling mod 99.9 2.3E-22 7.8E-27 223.6 21.3 269 31-299 7-336 (406)
47 2x6q_A Trehalose-synthase TRET 99.9 2.3E-22 7.9E-27 224.3 19.7 342 535-897 39-415 (416)
48 2q7f_A YRRB protein; TPR, prot 99.9 2E-21 6.9E-26 199.0 23.6 217 236-452 23-239 (243)
49 3c48_A Predicted glycosyltrans 99.9 3.1E-23 1.1E-27 233.2 10.6 344 532-900 16-429 (438)
50 2q7f_A YRRB protein; TPR, prot 99.9 2.7E-21 9.2E-26 198.1 24.1 210 33-242 23-233 (243)
51 2r60_A Glycosyl transferase, g 99.9 1.7E-23 6E-28 239.1 6.9 345 535-902 6-465 (499)
52 4a1s_A PINS, partner of inscut 99.9 1.4E-21 4.8E-26 217.8 21.5 276 136-438 49-375 (411)
53 4a1s_A PINS, partner of inscut 99.9 2.2E-21 7.7E-26 216.2 22.6 273 30-302 45-375 (411)
54 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-21 7.1E-26 203.1 20.0 226 7-234 13-246 (275)
55 3oy2_A Glycosyltransferase B73 99.9 8.7E-22 3E-26 219.4 18.1 339 537-901 1-395 (413)
56 3ro2_A PINS homolog, G-protein 99.9 3.1E-21 1.1E-25 208.0 21.2 275 137-439 7-336 (338)
57 2ho1_A Type 4 fimbrial biogene 99.9 4.5E-20 1.6E-24 190.2 28.4 209 236-444 37-247 (252)
58 3vtx_A MAMA; tetratricopeptide 99.9 1.3E-20 4.3E-25 183.9 22.8 173 268-440 3-175 (184)
59 4e6h_A MRNA 3'-END-processing 99.9 3.3E-18 1.1E-22 197.4 46.4 427 15-441 48-576 (679)
60 3ro2_A PINS homolog, G-protein 99.9 4.7E-21 1.6E-25 206.7 21.2 267 36-302 8-335 (338)
61 2vq2_A PILW, putative fimbrial 99.9 1E-19 3.5E-24 183.7 29.1 211 236-446 8-222 (225)
62 1ouv_A Conserved hypothetical 99.9 1.7E-19 5.7E-24 188.5 31.1 232 200-442 3-258 (273)
63 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.7E-20 5.7E-25 196.2 23.0 188 43-232 15-206 (275)
64 2ho1_A Type 4 fimbrial biogene 99.9 9.2E-20 3.1E-24 187.9 28.0 208 28-235 31-241 (252)
65 1ouv_A Conserved hypothetical 99.9 4.2E-19 1.4E-23 185.4 33.1 229 29-268 2-254 (273)
66 3fro_A GLGA glycogen synthase; 99.9 2E-21 6.9E-26 218.7 15.1 340 535-898 1-432 (439)
67 4e6h_A MRNA 3'-END-processing 99.9 5.1E-18 1.7E-22 195.8 43.3 421 49-469 48-570 (679)
68 4abn_A Tetratricopeptide repea 99.9 1.5E-20 5.3E-25 212.2 21.9 215 47-262 82-318 (474)
69 2vq2_A PILW, putative fimbrial 99.9 2.8E-19 9.6E-24 180.4 29.1 207 29-235 4-214 (225)
70 3vtx_A MAMA; tetratricopeptide 99.9 7.5E-20 2.6E-24 178.4 23.8 171 32-202 4-174 (184)
71 2jjm_A Glycosyl transferase, g 99.8 5.3E-22 1.8E-26 219.5 7.2 326 548-903 26-392 (394)
72 2ond_A Cleavage stimulation fa 99.8 1.3E-19 4.6E-24 192.6 25.5 220 16-235 33-273 (308)
73 2ond_A Cleavage stimulation fa 99.8 3.2E-19 1.1E-23 189.7 28.3 250 118-379 33-304 (308)
74 4abn_A Tetratricopeptide repea 99.8 4.4E-20 1.5E-24 208.4 21.5 207 254-461 86-313 (474)
75 2gek_A Phosphatidylinositol ma 99.8 3.6E-21 1.2E-25 214.1 11.4 337 532-899 16-386 (406)
76 1b89_A Protein (clathrin heavy 99.8 4.2E-20 1.4E-24 196.9 17.9 371 10-423 14-405 (449)
77 2iuy_A Avigt4, glycosyltransfe 99.8 2.9E-19 9.8E-24 193.3 23.7 302 536-899 3-338 (342)
78 4gyw_A UDP-N-acetylglucosamine 99.8 9.5E-20 3.2E-24 213.1 20.2 176 264-439 3-178 (723)
79 2iw1_A Lipopolysaccharide core 99.8 3.1E-21 1.1E-25 212.0 6.1 329 537-896 1-371 (374)
80 1b89_A Protein (clathrin heavy 99.8 6.2E-20 2.1E-24 195.5 15.7 352 43-435 13-385 (449)
81 3ulq_A Response regulator aspa 99.8 6E-19 2E-23 194.3 23.8 293 4-298 17-367 (383)
82 4i17_A Hypothetical protein; T 99.8 8E-19 2.7E-23 177.8 22.9 208 235-449 6-223 (228)
83 4i17_A Hypothetical protein; T 99.8 1.4E-18 4.8E-23 175.9 24.1 209 30-245 4-223 (228)
84 3ulq_A Response regulator aspa 99.8 1.4E-18 4.8E-23 191.4 24.8 231 206-437 106-370 (383)
85 1rzu_A Glycogen synthase 1; gl 99.8 4.8E-20 1.6E-24 209.9 12.2 178 703-898 280-477 (485)
86 2qzs_A Glycogen synthase; glyc 99.8 7.3E-20 2.5E-24 208.4 11.3 178 703-898 280-478 (485)
87 3dra_A Protein farnesyltransfe 99.8 5E-17 1.7E-21 168.7 28.2 229 50-278 50-301 (306)
88 3nf1_A KLC 1, kinesin light ch 99.8 3.4E-19 1.2E-23 189.9 12.3 248 165-438 23-310 (311)
89 3nf1_A KLC 1, kinesin light ch 99.8 8.9E-19 3E-23 186.6 14.8 247 29-302 23-310 (311)
90 3dra_A Protein farnesyltransfe 99.8 7.3E-17 2.5E-21 167.4 27.1 229 220-448 50-301 (306)
91 3qky_A Outer membrane assembly 99.8 2.5E-17 8.4E-22 170.6 21.7 210 27-253 9-249 (261)
92 3qky_A Outer membrane assembly 99.8 2E-17 6.9E-22 171.3 19.3 191 236-443 15-232 (261)
93 2pzi_A Probable serine/threoni 99.8 7.1E-18 2.4E-22 199.0 17.8 202 264-469 388-598 (681)
94 1hz4_A MALT regulatory protein 99.8 5.1E-16 1.7E-20 170.2 31.4 272 33-333 14-322 (373)
95 1qqe_A Vesicular transport pro 99.8 1.5E-17 5.1E-22 175.1 18.1 173 271-443 78-277 (292)
96 3s28_A Sucrose synthase 1; gly 99.7 1.3E-18 4.3E-23 202.9 10.3 185 702-896 559-769 (816)
97 2pzi_A Probable serine/threoni 99.7 2.5E-17 8.5E-22 194.4 21.5 188 27-218 388-583 (681)
98 1hz4_A MALT regulatory protein 99.7 3.8E-16 1.3E-20 171.2 29.6 264 2-265 17-322 (373)
99 3q15_A PSP28, response regulat 99.7 9.6E-17 3.3E-21 176.2 24.6 290 8-298 21-364 (378)
100 3as5_A MAMA; tetratricopeptide 99.7 4.7E-17 1.6E-21 158.3 19.3 172 270-441 8-179 (186)
101 1f0k_A MURG, UDP-N-acetylgluco 99.7 1.3E-17 4.3E-22 182.2 14.9 320 537-899 7-360 (364)
102 1qqe_A Vesicular transport pro 99.7 1.1E-16 3.8E-21 168.4 21.2 200 17-235 3-231 (292)
103 3q15_A PSP28, response regulat 99.7 5.7E-16 1.9E-20 170.0 27.6 229 205-434 103-364 (378)
104 4ga2_A E3 SUMO-protein ligase 99.7 1.2E-17 4E-22 156.1 11.8 146 5-150 3-149 (150)
105 3as5_A MAMA; tetratricopeptide 99.7 2.2E-16 7.6E-21 153.4 20.7 170 33-202 8-177 (186)
106 4ga2_A E3 SUMO-protein ligase 99.7 1.7E-17 5.9E-22 154.9 11.8 146 39-184 3-149 (150)
107 3urz_A Uncharacterized protein 99.7 2.5E-16 8.6E-21 156.4 19.2 168 33-201 4-189 (208)
108 3urz_A Uncharacterized protein 99.7 2E-16 6.8E-21 157.1 18.2 172 66-238 3-192 (208)
109 3dss_A Geranylgeranyl transfer 99.7 6.9E-15 2.3E-19 153.1 29.5 236 45-280 41-319 (331)
110 3edt_B KLC 2, kinesin light ch 99.7 1.3E-16 4.3E-21 167.1 16.2 223 10-232 12-281 (283)
111 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.5E-15 5.2E-20 152.9 22.2 189 236-440 4-218 (225)
112 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.4E-15 4.7E-20 153.3 21.0 185 2-203 7-218 (225)
113 2bfw_A GLGA glycogen synthase; 99.7 1.7E-16 5.9E-21 156.7 13.7 159 702-874 26-196 (200)
114 3qhp_A Type 1 capsular polysac 99.7 2.5E-16 8.7E-21 150.1 13.5 158 714-887 3-165 (166)
115 3edt_B KLC 2, kinesin light ch 99.7 5.8E-16 2E-20 162.0 16.9 229 44-299 12-281 (283)
116 3dss_A Geranylgeranyl transfer 99.7 3.6E-14 1.2E-18 147.7 30.0 233 80-312 42-317 (331)
117 4gco_A Protein STI-1; structur 99.7 6.9E-16 2.4E-20 138.9 14.8 121 330-450 5-125 (126)
118 3q7a_A Farnesyltransferase alp 99.7 1.4E-14 4.9E-19 151.2 25.9 185 35-219 56-258 (349)
119 2x0d_A WSAF; GT4 family, trans 99.7 2.2E-17 7.4E-22 181.5 4.0 153 722-897 253-410 (413)
120 1vgv_A UDP-N-acetylglucosamine 99.6 7.7E-17 2.6E-21 177.4 7.3 333 537-898 1-378 (384)
121 3q7a_A Farnesyltransferase alp 99.6 2.8E-14 9.7E-19 149.0 25.7 175 11-185 66-258 (349)
122 2r5s_A Uncharacterized protein 99.6 7.1E-16 2.4E-20 148.6 12.0 162 272-434 8-172 (176)
123 4gco_A Protein STI-1; structur 99.6 3E-15 1E-19 134.7 15.3 118 27-144 7-124 (126)
124 3beo_A UDP-N-acetylglucosamine 99.6 8.6E-16 3E-20 168.4 14.0 326 534-893 6-373 (375)
125 2f9f_A First mannosyl transfer 99.6 3.9E-16 1.3E-20 150.3 9.7 155 705-871 15-175 (177)
126 3qou_A Protein YBBN; thioredox 99.6 5.1E-15 1.8E-19 155.0 18.9 169 266-434 113-283 (287)
127 2r5s_A Uncharacterized protein 99.6 2E-15 6.9E-20 145.5 14.2 165 31-196 4-171 (176)
128 3qou_A Protein YBBN; thioredox 99.6 1.5E-14 5.1E-19 151.5 20.9 167 30-196 114-282 (287)
129 2vsy_A XCC0866; transferase, g 99.6 1.5E-14 5.1E-19 168.0 22.0 163 12-174 2-167 (568)
130 3gyz_A Chaperone protein IPGC; 99.6 8.4E-16 2.9E-20 142.4 8.2 116 325-440 23-138 (151)
131 2ifu_A Gamma-SNAP; membrane fu 99.6 1.7E-14 5.6E-19 153.0 18.2 195 11-230 3-222 (307)
132 4f3v_A ESX-1 secretion system 99.6 5.1E-15 1.7E-19 149.4 13.2 203 241-446 12-247 (282)
133 2uy1_A Cleavage stimulation fa 99.6 4.9E-12 1.7E-16 142.2 36.7 209 253-471 196-415 (493)
134 2ifu_A Gamma-SNAP; membrane fu 99.6 2.8E-14 9.6E-19 151.2 17.3 97 341-439 119-227 (307)
135 1v4v_A UDP-N-acetylglucosamine 99.6 1.6E-14 5.5E-19 158.2 15.5 320 536-897 5-365 (376)
136 3rjv_A Putative SEL1 repeat pr 99.6 8.4E-14 2.9E-18 138.4 18.7 176 254-437 4-199 (212)
137 3vue_A GBSS-I, granule-bound s 99.6 9.2E-15 3.1E-19 165.4 13.1 175 703-897 315-512 (536)
138 3mv2_B Coatomer subunit epsilo 99.6 2.9E-13 9.8E-18 138.4 22.7 245 179-443 23-290 (310)
139 3gyz_A Chaperone protein IPGC; 99.6 1.3E-14 4.4E-19 134.4 11.4 113 56-168 25-137 (151)
140 4f3v_A ESX-1 secretion system 99.6 1.4E-14 4.9E-19 146.1 12.5 203 4-209 12-247 (282)
141 1p5q_A FKBP52, FK506-binding p 99.6 4.8E-16 1.7E-20 166.7 1.8 151 284-434 127-293 (336)
142 2xci_A KDO-transferase, 3-deox 99.6 3.2E-15 1.1E-19 162.3 8.3 147 721-874 204-360 (374)
143 2uy1_A Cleavage stimulation fa 99.5 8.7E-12 3E-16 140.1 35.7 374 11-434 6-412 (493)
144 2hy7_A Glucuronosyltransferase 99.5 5.7E-15 2E-19 162.5 7.8 143 714-896 223-379 (406)
145 1p5q_A FKBP52, FK506-binding p 99.5 2E-15 6.9E-20 161.8 3.9 154 316-469 125-294 (336)
146 2c2l_A CHIP, carboxy terminus 99.5 3.1E-14 1.1E-18 148.4 12.8 197 30-231 1-198 (281)
147 2fo7_A Synthetic consensus TPR 99.5 3.1E-13 1.1E-17 123.1 18.1 133 306-438 3-135 (136)
148 2vgx_A Chaperone SYCD; alterna 99.5 3E-14 1E-18 132.4 11.2 119 324-442 7-125 (148)
149 2c2l_A CHIP, carboxy terminus 99.5 7.5E-14 2.6E-18 145.5 15.0 195 236-435 4-199 (281)
150 3rjv_A Putative SEL1 repeat pr 99.5 6E-13 2E-17 132.2 20.0 174 17-198 4-197 (212)
151 2fo7_A Synthetic consensus TPR 99.5 9.6E-13 3.3E-17 119.8 19.3 131 36-166 4-134 (136)
152 2vgx_A Chaperone SYCD; alterna 99.5 4.9E-14 1.7E-18 130.9 10.7 118 20-137 8-125 (148)
153 3mv2_B Coatomer subunit epsilo 99.5 2.6E-12 8.8E-17 131.4 21.1 248 42-307 22-290 (310)
154 1dce_A Protein (RAB geranylger 99.5 1.2E-13 4.2E-18 157.5 12.7 188 251-438 44-270 (567)
155 2xcb_A PCRH, regulatory protei 99.5 1.6E-13 5.5E-18 126.6 11.2 120 20-139 5-124 (142)
156 2xcb_A PCRH, regulatory protei 99.5 1.6E-13 5.5E-18 126.7 11.0 119 325-443 5-123 (142)
157 1uqt_A Alpha, alpha-trehalose- 99.5 2.6E-13 9E-18 150.6 14.7 178 703-896 248-454 (482)
158 2e2e_A Formate-dependent nitri 99.4 2.5E-13 8.6E-18 130.9 11.0 130 7-136 18-150 (177)
159 2fbn_A 70 kDa peptidylprolyl i 99.4 1.3E-13 4.3E-18 135.7 8.6 155 281-435 15-186 (198)
160 1dce_A Protein (RAB geranylger 99.4 2.5E-12 8.7E-17 146.7 20.2 174 285-458 44-244 (567)
161 3upv_A Heat shock protein STI1 99.4 2.2E-12 7.5E-17 116.2 15.7 112 33-144 4-121 (126)
162 2qfc_A PLCR protein; TPR, HTH, 99.4 4.5E-12 1.5E-16 133.2 20.5 166 270-435 75-266 (293)
163 3otg_A CALG1; calicheamicin, T 99.4 2.5E-12 8.4E-17 142.7 19.4 324 532-895 16-409 (412)
164 3upv_A Heat shock protein STI1 99.4 1.8E-12 6.2E-17 116.7 14.6 110 339-448 5-120 (126)
165 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.9E-12 1E-16 127.5 17.5 131 306-439 8-154 (213)
166 2e2e_A Formate-dependent nitri 99.4 1.1E-12 3.9E-17 126.2 13.8 129 314-442 20-151 (177)
167 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3.7E-12 1.3E-16 126.8 18.0 129 3-134 10-154 (213)
168 3ot5_A UDP-N-acetylglucosamine 99.4 9.7E-13 3.3E-17 143.7 14.8 335 536-911 27-403 (403)
169 1a17_A Serine/threonine protei 99.4 4.8E-12 1.6E-16 120.1 17.0 132 341-472 16-149 (166)
170 1a17_A Serine/threonine protei 99.4 1E-11 3.5E-16 117.8 18.4 131 33-163 13-145 (166)
171 3u3w_A Transcriptional activat 99.4 6.9E-12 2.4E-16 131.8 18.4 161 275-435 80-266 (293)
172 2qfc_A PLCR protein; TPR, HTH, 99.4 1.9E-11 6.7E-16 128.3 21.6 169 64-232 72-266 (293)
173 3dzc_A UDP-N-acetylglucosamine 99.4 4.8E-13 1.6E-17 146.1 9.3 305 535-869 24-377 (396)
174 2lni_A Stress-induced-phosphop 99.4 4.3E-12 1.5E-16 115.3 14.2 117 304-420 16-132 (133)
175 3sz7_A HSC70 cochaperone (SGT) 99.4 3.4E-12 1.2E-16 121.1 13.6 113 335-447 8-120 (164)
176 2lni_A Stress-induced-phosphop 99.4 6E-12 2E-16 114.3 14.7 120 30-149 13-132 (133)
177 2fbn_A 70 kDa peptidylprolyl i 99.4 8E-13 2.7E-17 130.0 9.4 143 46-188 17-175 (198)
178 2vyi_A SGTA protein; chaperone 99.4 7.2E-12 2.4E-16 113.2 15.0 122 30-151 9-130 (131)
179 3tsa_A SPNG, NDP-rhamnosyltran 99.4 1.2E-11 3.9E-16 136.2 19.1 165 710-894 216-388 (391)
180 3sz7_A HSC70 cochaperone (SGT) 99.4 6E-12 2.1E-16 119.3 14.5 114 30-143 8-121 (164)
181 4gcn_A Protein STI-1; structur 99.4 3.7E-12 1.3E-16 114.6 12.3 102 338-439 8-116 (127)
182 3u3w_A Transcriptional activat 99.4 1.3E-11 4.3E-16 129.8 18.4 165 34-198 76-266 (293)
183 1hxi_A PEX5, peroxisome target 99.4 3.9E-12 1.3E-16 113.3 12.0 102 340-441 19-120 (121)
184 2hr2_A Hypothetical protein; a 99.4 3.6E-12 1.2E-16 115.9 11.4 103 340-442 13-138 (159)
185 2vyi_A SGTA protein; chaperone 99.3 1.4E-11 4.8E-16 111.2 15.2 122 64-185 9-130 (131)
186 1na0_A Designed protein CTPR3; 99.3 4.8E-11 1.6E-15 106.7 17.7 116 33-148 9-124 (125)
187 3t5t_A Putative glycosyltransf 99.3 9.8E-12 3.3E-16 135.7 15.2 181 701-899 272-476 (496)
188 1na0_A Designed protein CTPR3; 99.3 3.4E-11 1.2E-15 107.6 16.5 107 341-447 12-118 (125)
189 4fzr_A SSFS6; structural genom 99.3 4.7E-12 1.6E-16 139.6 12.8 326 533-891 12-397 (398)
190 3q49_B STIP1 homology and U bo 99.3 9.6E-12 3.3E-16 113.8 12.7 106 333-438 4-109 (137)
191 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 9.7E-13 3.3E-17 147.3 7.1 143 318-460 248-405 (457)
192 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.2E-12 4.2E-17 146.5 7.8 142 14-155 249-405 (457)
193 1hxi_A PEX5, peroxisome target 99.3 9.8E-12 3.3E-16 110.7 12.1 102 34-135 18-119 (121)
194 1elw_A TPR1-domain of HOP; HOP 99.3 4.6E-11 1.6E-15 105.5 15.8 111 338-448 4-114 (118)
195 3q49_B STIP1 homology and U bo 99.3 2.6E-11 8.9E-16 110.8 14.4 105 29-133 5-109 (137)
196 4gcn_A Protein STI-1; structur 99.3 2.2E-11 7.7E-16 109.4 13.7 100 33-132 8-114 (127)
197 2kck_A TPR repeat; tetratricop 99.3 2.5E-11 8.4E-16 106.2 13.5 107 334-440 2-111 (112)
198 1elw_A TPR1-domain of HOP; HOP 99.3 8.9E-11 3E-15 103.7 16.7 112 33-144 4-115 (118)
199 3rkv_A Putative peptidylprolyl 99.3 1E-11 3.5E-16 117.4 11.1 103 340-442 13-133 (162)
200 2xev_A YBGF; tetratricopeptide 99.3 9E-11 3.1E-15 105.9 16.8 108 2-109 5-118 (129)
201 3gw4_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 118.0 14.9 156 9-164 2-176 (203)
202 2dba_A Smooth muscle cell asso 99.3 8E-11 2.7E-15 109.1 15.9 117 334-450 24-143 (148)
203 1wao_1 Serine/threonine protei 99.3 1.9E-12 6.3E-17 145.5 5.4 137 304-440 6-155 (477)
204 3ia7_A CALG4; glycosysltransfe 99.3 1.2E-10 4.2E-15 128.6 20.0 168 710-895 229-399 (402)
205 2hr2_A Hypothetical protein; a 99.3 2.9E-11 1E-15 109.9 12.0 102 33-134 11-135 (159)
206 3gw4_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 117.8 14.3 155 282-436 4-177 (203)
207 3rkv_A Putative peptidylprolyl 99.3 2.5E-11 8.5E-16 114.8 12.0 88 334-421 59-147 (162)
208 2dba_A Smooth muscle cell asso 99.3 1.2E-10 4.2E-15 107.8 16.4 117 29-145 24-143 (148)
209 2xev_A YBGF; tetratricopeptide 99.2 1.5E-10 5.1E-15 104.4 15.9 113 35-147 4-122 (129)
210 3nb0_A Glycogen [starch] synth 99.2 9.2E-11 3.1E-15 130.1 16.7 134 759-900 476-637 (725)
211 1wao_1 Serine/threonine protei 99.2 1.6E-11 5.5E-16 137.8 10.8 124 2-125 9-134 (477)
212 3rsc_A CALG2; TDP, enediyne, s 99.2 4.2E-10 1.4E-14 124.7 20.8 166 710-895 245-414 (415)
213 2if4_A ATFKBP42; FKBP-like, al 99.2 1.1E-11 3.8E-16 132.6 7.7 158 267-441 176-334 (338)
214 1zu2_A Mitochondrial import re 99.2 3E-11 1E-15 109.5 9.2 96 350-445 14-130 (158)
215 2kck_A TPR repeat; tetratricop 99.2 9.7E-11 3.3E-15 102.4 12.1 106 29-134 2-110 (112)
216 4b4t_Q 26S proteasome regulato 99.2 8.8E-10 3E-14 123.0 22.1 196 2-197 7-244 (434)
217 1elr_A TPR2A-domain of HOP; HO 99.2 2E-10 6.9E-15 103.6 13.1 113 33-146 4-123 (131)
218 2iyf_A OLED, oleandomycin glyc 99.2 2.3E-09 7.9E-14 119.3 24.3 171 710-899 230-404 (430)
219 3oti_A CALG3; calicheamicin, T 99.2 5E-10 1.7E-14 123.2 18.6 321 533-893 17-396 (398)
220 2if4_A ATFKBP42; FKBP-like, al 99.2 2.1E-11 7.3E-16 130.4 7.2 156 31-203 177-333 (338)
221 4hwg_A UDP-N-acetylglucosamine 99.2 5E-12 1.7E-16 136.6 1.9 327 536-893 9-374 (385)
222 3k9i_A BH0479 protein; putativ 99.2 4.2E-11 1.5E-15 106.0 7.6 93 351-443 3-98 (117)
223 1elr_A TPR2A-domain of HOP; HO 99.2 1.4E-10 4.7E-15 104.7 11.1 107 340-447 6-119 (131)
224 1ihg_A Cyclophilin 40; ppiase 99.2 1.9E-10 6.4E-15 124.3 14.1 139 271-427 224-362 (370)
225 4b4t_Q 26S proteasome regulato 99.1 1.9E-09 6.6E-14 120.2 21.8 200 33-232 4-245 (434)
226 1ihg_A Cyclophilin 40; ppiase 99.1 3.7E-10 1.3E-14 122.1 15.0 122 33-154 223-360 (370)
227 3k9i_A BH0479 protein; putativ 99.1 7.5E-11 2.6E-15 104.3 7.9 93 12-104 3-98 (117)
228 1zu2_A Mitochondrial import re 99.1 1.6E-10 5.5E-15 104.8 9.5 93 9-101 12-125 (158)
229 3s2u_A UDP-N-acetylglucosamine 99.1 2.5E-09 8.4E-14 115.4 19.2 175 704-892 171-354 (365)
230 3ro3_A PINS homolog, G-protein 99.1 4.9E-10 1.7E-14 105.3 11.6 98 340-437 51-160 (164)
231 3ro3_A PINS homolog, G-protein 99.0 2.7E-09 9.2E-14 100.2 12.9 130 33-162 9-156 (164)
232 4g26_A Pentatricopeptide repea 99.0 4.4E-08 1.5E-12 109.9 23.4 180 273-452 29-221 (501)
233 2p6p_A Glycosyl transferase; X 98.9 6.3E-08 2.1E-12 105.8 21.4 159 711-894 209-379 (384)
234 2l6j_A TPR repeat-containing p 98.9 7.5E-10 2.6E-14 96.6 4.0 94 338-431 4-103 (111)
235 2kat_A Uncharacterized protein 98.9 1E-08 3.4E-13 90.1 11.1 83 356-438 3-85 (115)
236 2kat_A Uncharacterized protein 98.9 8.7E-09 3E-13 90.5 10.5 83 322-404 3-85 (115)
237 4g26_A Pentatricopeptide repea 98.9 2.6E-07 8.9E-12 103.5 24.6 160 104-263 29-202 (501)
238 2yjn_A ERYCIII, glycosyltransf 98.9 2.8E-08 9.5E-13 110.7 16.4 160 711-894 266-435 (441)
239 2l6j_A TPR repeat-containing p 98.8 1.9E-09 6.6E-14 94.0 5.1 92 33-124 4-101 (111)
240 1na3_A Designed protein CTPR2; 98.8 1.8E-08 6.1E-13 84.0 10.7 81 339-419 10-90 (91)
241 1na3_A Designed protein CTPR2; 98.8 3.1E-08 1.1E-12 82.5 11.7 83 32-114 8-90 (91)
242 2kc7_A BFR218_protein; tetratr 98.7 1.3E-08 4.3E-13 86.6 6.7 91 342-440 4-95 (99)
243 2o6l_A UDP-glucuronosyltransfe 98.7 2.8E-07 9.7E-12 87.3 16.3 138 712-867 21-162 (170)
244 1klx_A Cysteine rich protein B 98.7 1.7E-07 5.8E-12 85.1 14.1 110 319-436 10-127 (138)
245 2kc7_A BFR218_protein; tetratr 98.7 2.1E-08 7.3E-13 85.2 7.2 89 3-99 4-93 (99)
246 3ma5_A Tetratricopeptide repea 98.7 5.3E-08 1.8E-12 82.8 9.2 71 28-98 2-72 (100)
247 3ma5_A Tetratricopeptide repea 98.7 2.6E-08 8.8E-13 84.8 7.2 72 367-438 2-73 (100)
248 1klx_A Cysteine rich protein B 98.7 3.4E-07 1.2E-11 83.1 15.0 111 13-131 9-127 (138)
249 3n71_A Histone lysine methyltr 98.6 8.6E-08 2.9E-12 106.4 11.3 94 340-433 353-462 (490)
250 4amg_A Snogd; transferase, pol 98.6 5.6E-07 1.9E-11 98.8 17.8 161 711-892 236-398 (400)
251 3rhz_A GTF3, nucleotide sugar 98.6 7.4E-08 2.5E-12 101.5 9.3 145 711-888 176-328 (339)
252 3n71_A Histone lysine methyltr 98.6 1.6E-07 5.4E-12 104.3 12.4 123 42-164 318-464 (490)
253 3ly7_A Transcriptional activat 98.6 2.1E-06 7.3E-11 89.2 19.6 85 364-451 269-353 (372)
254 3ly7_A Transcriptional activat 98.6 1.8E-06 6.1E-11 89.8 18.8 71 131-202 273-343 (372)
255 3u64_A Protein TP_0956; tetrat 98.5 2.5E-06 8.7E-11 84.6 17.4 105 131-235 148-272 (301)
256 3u64_A Protein TP_0956; tetrat 98.5 3.7E-06 1.3E-10 83.5 17.3 105 164-268 147-272 (301)
257 2iya_A OLEI, oleandomycin glyc 98.5 3.2E-06 1.1E-10 93.5 17.7 164 711-894 254-421 (424)
258 1pc2_A Mitochondria fission pr 98.4 1.6E-06 5.3E-11 77.6 10.7 91 353-443 13-108 (152)
259 3bee_A Putative YFRE protein; 98.4 1.7E-06 5.6E-11 71.7 10.2 72 368-439 2-76 (93)
260 1pc2_A Mitochondria fission pr 98.4 2.6E-06 8.8E-11 76.2 11.8 94 14-107 13-111 (152)
261 3bee_A Putative YFRE protein; 98.3 3.2E-06 1.1E-10 70.0 9.6 71 29-99 2-75 (93)
262 1iir_A Glycosyltransferase GTF 98.2 1.1E-05 3.6E-10 88.9 14.8 157 713-892 239-398 (415)
263 2v5f_A Prolyl 4-hydroxylase su 98.2 1.4E-05 4.8E-10 68.0 11.4 77 371-447 4-87 (104)
264 3qww_A SET and MYND domain-con 98.2 3.7E-06 1.3E-10 91.6 9.6 94 350-443 310-424 (433)
265 3qwp_A SET and MYND domain-con 98.0 2.1E-05 7.1E-10 86.0 12.2 99 346-444 295-414 (429)
266 1rrv_A Glycosyltransferase GTF 98.0 2.8E-05 9.6E-10 85.5 13.4 141 713-872 238-382 (416)
267 2v5f_A Prolyl 4-hydroxylase su 98.0 4.5E-05 1.5E-09 64.9 11.6 76 33-108 5-87 (104)
268 3qww_A SET and MYND domain-con 98.0 3.5E-05 1.2E-09 83.9 13.2 85 80-164 311-411 (433)
269 3h4t_A Glycosyltransferase GTF 97.9 0.00013 4.4E-09 79.8 16.0 158 712-893 221-381 (404)
270 3qwp_A SET and MYND domain-con 97.9 4.2E-05 1.4E-09 83.5 11.5 86 78-163 298-399 (429)
271 1nzn_A CGI-135 protein, fissio 97.8 0.0002 7E-09 61.4 11.7 96 12-107 14-114 (126)
272 3spa_A Mtrpol, DNA-directed RN 97.8 5.4E-05 1.8E-09 88.0 10.2 107 339-445 128-240 (1134)
273 1nzn_A CGI-135 protein, fissio 97.8 0.00015 5.2E-09 62.2 10.1 92 352-443 15-111 (126)
274 1psw_A ADP-heptose LPS heptosy 97.7 9.7E-05 3.3E-09 79.0 10.9 119 703-828 170-296 (348)
275 2c1x_A UDP-glucose flavonoid 3 97.7 0.00028 9.7E-09 77.9 13.2 149 711-870 270-422 (456)
276 2pq6_A UDP-glucuronosyl/UDP-gl 97.6 0.00095 3.2E-08 74.5 17.2 152 711-871 294-450 (482)
277 3hbf_A Flavonoid 3-O-glucosylt 97.6 0.00064 2.2E-08 74.3 15.3 138 711-860 272-415 (454)
278 4h7y_A Dual specificity protei 97.6 0.00099 3.4E-08 58.2 12.4 74 374-448 63-136 (161)
279 3ffl_A Anaphase-promoting comp 97.5 0.00063 2.1E-08 61.1 11.2 131 2-145 23-165 (167)
280 1qsa_A Protein (soluble lytic 97.5 0.24 8.1E-06 56.1 36.8 400 3-432 10-439 (618)
281 2acv_A Triterpene UDP-glucosyl 97.5 0.0036 1.2E-07 69.2 18.8 145 711-865 275-432 (463)
282 4h7y_A Dual specificity protei 97.4 0.0037 1.3E-07 54.7 14.1 53 183-235 74-126 (161)
283 4ady_A RPN2, 26S proteasome re 97.4 0.23 8E-06 58.1 33.3 44 36-81 233-276 (963)
284 3spa_A Mtrpol, DNA-directed RN 97.4 0.0021 7.2E-08 75.0 16.0 99 304-402 127-231 (1134)
285 4ady_A RPN2, 26S proteasome re 97.4 0.27 9.3E-06 57.6 33.1 260 179-447 384-668 (963)
286 3tov_A Glycosyl transferase fa 97.1 0.00055 1.9E-08 72.7 7.2 114 706-828 178-296 (349)
287 2vch_A Hydroquinone glucosyltr 97.1 0.007 2.4E-07 67.2 16.0 144 712-865 268-438 (480)
288 3ffl_A Anaphase-promoting comp 97.1 0.0037 1.3E-07 56.2 10.5 134 33-179 20-165 (167)
289 1qsa_A Protein (soluble lytic 97.1 0.65 2.2E-05 52.6 33.5 356 21-398 57-439 (618)
290 1y8m_A FIS1; mitochondria, unk 96.9 0.017 5.8E-07 50.3 13.2 75 369-443 36-114 (144)
291 1y8m_A FIS1; mitochondria, unk 96.9 0.02 7E-07 49.8 13.6 77 30-106 36-116 (144)
292 3o48_A Mitochondria fission 1 96.8 0.015 5.1E-07 49.9 11.5 77 31-107 38-118 (134)
293 3o48_A Mitochondria fission 1 96.7 0.013 4.3E-07 50.4 10.7 76 368-443 36-115 (134)
294 3kae_A CDC27, possible protein 96.3 0.56 1.9E-05 41.6 18.4 181 8-201 11-240 (242)
295 2gt1_A Lipopolysaccharide hept 96.1 0.011 3.7E-07 62.2 8.2 105 714-828 181-288 (326)
296 3mkq_A Coatomer beta'-subunit; 96.1 0.42 1.4E-05 57.1 23.2 100 7-127 607-707 (814)
297 4gns_B Protein CSD3, chitin bi 95.7 0.067 2.3E-06 61.6 12.8 112 15-127 265-397 (754)
298 3mkq_A Coatomer beta'-subunit; 95.6 0.4 1.4E-05 57.3 20.5 45 247-296 663-707 (814)
299 2gj4_A Glycogen phosphorylase, 95.6 0.11 3.8E-06 59.5 14.1 114 705-821 540-684 (824)
300 3hbm_A UDP-sugar hydrolase; PS 95.5 0.11 3.7E-06 52.5 12.5 85 744-839 186-270 (282)
301 3txn_A 26S proteasome regulato 95.4 1.5 5.1E-05 46.3 20.9 57 174-230 104-166 (394)
302 4gns_B Protein CSD3, chitin bi 95.3 0.086 3E-06 60.7 11.8 59 374-432 339-397 (754)
303 1zbp_A Hypothetical protein VP 94.9 0.34 1.2E-05 47.4 13.2 60 7-66 5-64 (273)
304 3txn_A 26S proteasome regulato 94.8 4.8 0.00016 42.4 25.7 93 140-232 104-210 (394)
305 2c4m_A Glycogen phosphorylase; 94.7 0.36 1.2E-05 55.2 14.5 114 704-820 505-649 (796)
306 3lvg_A Clathrin heavy chain 1; 94.5 2.6E-06 8.9E-11 89.3 -25.1 366 31-429 52-477 (624)
307 3mkq_B Coatomer subunit alpha; 94.5 0.98 3.4E-05 41.3 14.3 44 281-329 16-59 (177)
308 1l5w_A Maltodextrin phosphoryl 94.4 0.21 7.2E-06 57.0 11.9 114 704-820 515-659 (796)
309 3mkq_B Coatomer subunit alpha; 94.2 1.1 3.9E-05 40.9 14.2 46 246-296 15-60 (177)
310 3kae_A CDC27, possible protein 94.2 2.9 9.9E-05 37.2 22.9 116 44-167 13-146 (242)
311 2jzc_A UDP-N-acetylglucosamine 94.1 0.13 4.3E-06 49.8 8.0 63 771-838 115-181 (224)
312 4b4t_P 26S proteasome regulato 93.8 9 0.00031 41.5 23.6 57 240-296 141-203 (445)
313 4b4t_P 26S proteasome regulato 93.7 6.8 0.00023 42.4 21.9 94 342-435 141-247 (445)
314 2ff4_A Probable regulatory pro 93.4 2.8 9.6E-05 44.6 18.2 61 374-434 173-233 (388)
315 1zbp_A Hypothetical protein VP 93.3 0.7 2.4E-05 45.2 11.7 28 414-441 108-135 (273)
316 2ff4_A Probable regulatory pro 92.8 1.6 5.4E-05 46.6 15.0 118 349-481 126-244 (388)
317 4fhn_B Nucleoporin NUP120; pro 92.3 2 6.7E-05 53.3 17.0 28 32-59 841-868 (1139)
318 1ya0_A SMG-7 transcript varian 90.6 1.1 3.6E-05 49.2 10.7 79 340-418 154-232 (497)
319 3lvg_A Clathrin heavy chain 1; 89.6 1.3E-05 4.5E-10 84.2 -27.3 223 134-384 53-275 (624)
320 4fhn_B Nucleoporin NUP120; pro 89.3 5.9 0.0002 49.0 17.3 87 203-290 899-991 (1139)
321 4b4t_R RPN7, 26S proteasome re 88.8 1.6 5.5E-05 47.2 10.4 100 32-131 130-238 (429)
322 4b4t_R RPN7, 26S proteasome re 88.7 2.2 7.4E-05 46.2 11.3 97 340-436 133-238 (429)
323 4b4t_S RPN3, 26S proteasome re 88.2 2.1 7.3E-05 46.4 10.5 63 340-404 233-302 (523)
324 1ya0_A SMG-7 transcript varian 88.1 2.4 8.1E-05 46.5 11.1 76 272-347 154-229 (497)
325 3lpz_A GET4 (YOR164C homolog); 87.8 26 0.00088 35.7 30.7 82 200-298 133-215 (336)
326 4b4t_S RPN3, 26S proteasome re 86.7 0.85 2.9E-05 49.5 6.3 122 43-166 146-301 (523)
327 3lpz_A GET4 (YOR164C homolog); 86.5 30 0.001 35.2 31.5 28 266-293 132-159 (336)
328 3j20_B 30S ribosomal protein S 84.4 2.5 8.7E-05 39.4 7.5 105 714-820 31-142 (202)
329 2wpv_A GET4, UPF0363 protein Y 81.7 47 0.0016 33.5 28.1 27 133-159 132-158 (312)
330 3h1g_A Chemotaxis protein CHEY 77.9 22 0.00075 30.1 11.2 108 743-857 6-125 (129)
331 1vi6_A 30S ribosomal protein S 77.7 3.6 0.00012 38.5 6.1 105 714-820 35-146 (208)
332 2wpv_A GET4, UPF0363 protein Y 77.2 65 0.0022 32.5 28.0 28 267-294 131-158 (312)
333 3mm4_A Histidine kinase homolo 75.9 20 0.0007 33.7 11.3 110 742-858 61-195 (206)
334 3to5_A CHEY homolog; alpha(5)b 75.0 39 0.0013 29.2 11.8 110 741-857 11-131 (134)
335 2pln_A HP1043, response regula 72.5 37 0.0013 28.9 11.4 107 741-857 17-131 (137)
336 3heb_A Response regulator rece 65.4 68 0.0023 27.8 12.7 108 743-856 5-132 (152)
337 3iz6_A 40S ribosomal protein S 65.1 5.9 0.0002 39.0 4.5 76 743-819 76-152 (305)
338 3u5c_A 40S ribosomal protein S 64.0 8.8 0.0003 37.0 5.4 77 742-819 70-147 (252)
339 3auf_A Glycinamide ribonucleot 63.6 22 0.00074 34.2 8.2 93 533-632 19-120 (229)
340 3kcq_A Phosphoribosylglycinami 63.4 29 0.00099 32.9 8.9 92 534-632 6-101 (215)
341 2xzm_B RPS0E; ribosome, transl 62.5 17 0.00058 35.0 7.1 78 742-820 66-145 (241)
342 3kht_A Response regulator; PSI 62.3 74 0.0025 27.2 12.1 106 742-853 5-122 (144)
343 2ywr_A Phosphoribosylglycinami 62.3 40 0.0014 32.0 9.9 89 537-632 2-99 (216)
344 4gq2_M Nucleoporin NUP120; bet 61.5 71 0.0024 38.3 14.1 95 343-441 815-933 (950)
345 1k68_A Phytochrome response re 61.4 73 0.0025 26.8 12.7 109 742-856 2-128 (140)
346 3gl9_A Response regulator; bet 59.8 73 0.0025 26.3 10.8 106 744-857 4-120 (122)
347 3bch_A 40S ribosomal protein S 59.6 12 0.0004 36.2 5.4 105 714-820 70-182 (253)
348 3re2_A Predicted protein; meni 58.5 1.6E+02 0.0054 29.9 13.1 22 438-459 373-394 (472)
349 3da8_A Probable 5'-phosphoribo 58.4 36 0.0012 32.3 8.6 93 532-632 8-108 (215)
350 4gq2_M Nucleoporin NUP120; bet 58.4 63 0.0022 38.7 12.9 105 39-147 816-948 (950)
351 1ygp_A Yeast glycogen phosphor 57.4 38 0.0013 39.0 9.8 49 771-821 689-743 (879)
352 2zkq_b 40S ribosomal protein S 56.9 10 0.00036 37.5 4.7 104 714-819 37-148 (295)
353 1qkk_A DCTD, C4-dicarboxylate 55.8 1E+02 0.0035 26.7 14.3 107 743-857 4-119 (155)
354 2ijq_A Hypothetical protein; s 55.3 47 0.0016 29.6 8.2 59 3-61 36-103 (161)
355 3av3_A Phosphoribosylglycinami 55.3 70 0.0024 30.2 10.2 90 537-633 4-102 (212)
356 1wy6_A Hypothetical protein ST 54.9 1E+02 0.0036 26.5 14.2 55 245-299 100-154 (172)
357 3kcn_A Adenylate cyclase homol 52.7 1.1E+02 0.0036 26.5 10.7 121 743-872 5-136 (151)
358 3hdv_A Response regulator; PSI 51.9 1.1E+02 0.0036 25.7 11.3 110 742-859 7-127 (136)
359 3gt7_A Sensor protein; structu 51.2 1.2E+02 0.0042 26.2 12.0 108 742-857 7-125 (154)
360 2hqs_H Peptidoglycan-associate 51.1 29 0.00099 29.2 6.1 75 724-798 19-114 (118)
361 3m6m_D Sensory/regulatory prot 49.9 1E+02 0.0035 26.3 10.1 110 741-858 13-135 (143)
362 1wy6_A Hypothetical protein ST 49.8 1.3E+02 0.0043 26.0 17.0 143 4-164 12-154 (172)
363 2l2q_A PTS system, cellobiose- 49.7 82 0.0028 25.9 8.6 62 755-820 21-84 (109)
364 3u84_A Menin; MLL, JUND, ledgf 49.0 2.5E+02 0.0084 29.1 13.1 22 438-459 405-426 (550)
365 3ilh_A Two component response 48.3 1.3E+02 0.0043 25.5 10.4 111 743-859 10-139 (146)
366 3ksm_A ABC-type sugar transpor 48.3 10 0.00034 37.7 3.2 83 726-810 171-255 (276)
367 3lua_A Response regulator rece 47.1 1.3E+02 0.0044 25.4 11.6 108 743-858 5-126 (140)
368 4ds3_A Phosphoribosylglycinami 47.0 47 0.0016 31.3 7.3 91 535-632 6-105 (209)
369 1jkx_A GART;, phosphoribosylgl 46.9 96 0.0033 29.2 9.6 89 537-632 1-98 (212)
370 3nbm_A PTS system, lactose-spe 46.7 18 0.0006 29.9 3.9 65 755-823 23-89 (108)
371 3tqr_A Phosphoribosylglycinami 45.6 51 0.0018 31.2 7.4 91 535-632 4-102 (215)
372 4dad_A Putative pilus assembly 45.5 51 0.0017 28.4 7.3 107 742-856 20-138 (146)
373 3jte_A Response regulator rece 45.2 1.4E+02 0.0048 25.2 11.1 107 743-857 4-121 (143)
374 1i3c_A Response regulator RCP1 45.2 1.5E+02 0.005 25.4 12.3 108 742-855 8-133 (149)
375 3ax2_A Mitochondrial import re 44.6 48 0.0017 24.9 5.5 34 410-443 21-54 (73)
376 3grc_A Sensor protein, kinase; 44.4 1.3E+02 0.0043 25.4 9.7 108 742-856 6-124 (140)
377 2qvg_A Two component response 43.7 1.5E+02 0.005 25.0 11.3 105 743-853 8-129 (143)
378 2kgw_A Outer membrane protein 43.3 27 0.00092 29.9 4.8 51 727-777 40-103 (129)
379 3kto_A Response regulator rece 42.9 1.5E+02 0.0051 24.8 9.9 107 743-857 7-124 (136)
380 2aiz_P Outer membrane protein 42.8 26 0.00087 30.4 4.5 50 728-777 47-109 (134)
381 2zay_A Response regulator rece 42.6 1E+02 0.0034 26.4 8.8 108 741-856 7-125 (147)
382 1k66_A Phytochrome response re 42.6 1.6E+02 0.0053 25.0 12.5 108 743-856 7-135 (149)
383 2hqr_A Putative transcriptiona 42.5 1.1E+02 0.0038 28.7 9.7 105 744-858 2-114 (223)
384 2qsj_A DNA-binding response re 42.4 1.6E+02 0.0056 25.2 11.4 108 742-856 3-121 (154)
385 1fmt_A Methionyl-tRNA FMet for 42.2 40 0.0014 34.2 6.6 78 535-620 2-89 (314)
386 2qzj_A Two-component response 42.1 1.1E+02 0.0038 25.8 8.8 107 742-856 4-118 (136)
387 1p6q_A CHEY2; chemotaxis, sign 41.9 1.4E+02 0.005 24.5 10.8 107 743-856 7-124 (129)
388 2j48_A Two-component sensor ki 41.8 1.1E+02 0.0036 24.6 8.5 102 743-855 2-114 (119)
389 2fp4_B Succinyl-COA ligase [GD 41.7 44 0.0015 35.2 7.0 47 811-859 348-394 (395)
390 2r25_B Osmosensing histidine p 41.7 1.5E+02 0.0052 24.7 12.2 107 743-856 3-124 (133)
391 2f62_A Nucleoside 2-deoxyribos 41.3 53 0.0018 29.4 6.4 62 756-821 30-107 (161)
392 3td3_A Outer membrane protein 40.8 37 0.0013 28.7 5.2 52 726-777 29-94 (123)
393 2qx5_A Nucleoporin NIC96; mRNA 39.8 2.3E+02 0.008 31.9 12.8 23 246-269 548-570 (661)
394 3qhp_A Type 1 capsular polysac 39.1 87 0.003 27.6 7.9 82 536-622 2-84 (166)
395 3ax2_A Mitochondrial import re 39.1 67 0.0023 24.2 5.5 31 37-67 21-51 (73)
396 3rqi_A Response regulator prot 39.1 1.5E+02 0.0051 26.7 9.7 108 742-857 7-123 (184)
397 2iz6_A Molybdenum cofactor car 39.1 41 0.0014 30.7 5.4 51 804-858 123-173 (176)
398 3bbn_B Ribosomal protein S2; s 38.7 76 0.0026 30.3 7.4 31 789-819 157-187 (231)
399 2rjn_A Response regulator rece 38.3 1.7E+02 0.0057 25.2 9.6 109 741-857 6-124 (154)
400 4had_A Probable oxidoreductase 37.6 75 0.0026 32.7 8.1 75 734-817 40-115 (350)
401 1jr2_A Uroporphyrinogen-III sy 37.3 42 0.0014 33.5 5.9 111 740-857 155-280 (286)
402 3l7i_A Teichoic acid biosynthe 37.3 57 0.002 37.8 7.8 155 703-874 528-698 (729)
403 2rpa_A Katanin P60 ATPase-cont 36.7 25 0.00084 27.0 2.9 25 3-27 16-40 (78)
404 3uuw_A Putative oxidoreductase 36.6 66 0.0023 32.4 7.3 73 733-817 22-95 (308)
405 2yxb_A Coenzyme B12-dependent 36.4 2.3E+02 0.0078 25.1 10.4 97 755-858 35-144 (161)
406 2nu8_B SCS-beta, succinyl-COA 36.2 68 0.0023 33.6 7.4 47 811-859 341-387 (388)
407 3p9z_A Uroporphyrinogen III co 36.0 14 0.00046 35.7 1.8 109 741-859 109-227 (229)
408 2k1s_A Inner membrane lipoprot 35.9 43 0.0015 29.5 5.0 50 728-777 51-113 (149)
409 3ldt_A Outer membrane protein, 35.9 65 0.0022 29.1 6.3 70 728-797 71-161 (169)
410 3t6k_A Response regulator rece 35.6 1.9E+02 0.0067 24.1 10.7 107 743-857 5-122 (136)
411 1p2f_A Response regulator; DRR 35.3 1.9E+02 0.0064 26.9 10.1 105 744-857 4-115 (220)
412 1g60_A Adenine-specific methyl 34.9 27 0.00092 34.4 3.8 31 788-819 211-241 (260)
413 3n0v_A Formyltetrahydrofolate 34.8 1.9E+02 0.0064 28.7 9.9 92 533-633 87-186 (286)
414 4e7p_A Response regulator; DNA 34.8 2.1E+02 0.0073 24.3 10.5 108 744-857 22-138 (150)
415 3mv2_A Coatomer subunit alpha; 34.6 3.7E+02 0.013 27.0 12.3 30 104-133 210-239 (325)
416 2v6y_A AAA family ATPase, P60 34.1 1.3E+02 0.0043 23.3 6.8 16 79-94 23-38 (83)
417 3h5i_A Response regulator/sens 34.0 1.7E+02 0.0059 24.6 8.8 107 742-856 5-121 (140)
418 2cwy_A Hypothetical protein TT 33.8 92 0.0032 24.8 6.1 28 3-30 5-32 (94)
419 3c3m_A Response regulator rece 33.5 2.1E+02 0.0072 23.9 9.7 107 743-857 4-121 (138)
420 1jbe_A Chemotaxis protein CHEY 33.2 2E+02 0.0068 23.5 12.9 107 743-856 5-122 (128)
421 2qxy_A Response regulator; reg 33.0 2.1E+02 0.0073 23.9 9.3 108 743-858 5-120 (142)
422 3oon_A Outer membrane protein 32.3 50 0.0017 27.9 4.7 53 725-777 31-97 (123)
423 2ijq_A Hypothetical protein; s 32.2 2E+02 0.0068 25.6 8.5 60 36-95 35-103 (161)
424 1ou0_A Precorrin-8X methylmuta 32.0 1.6E+02 0.0054 27.4 8.0 86 728-835 115-202 (207)
425 3p9x_A Phosphoribosylglycinami 31.9 1.1E+02 0.0038 28.7 7.3 89 537-632 3-100 (211)
426 2bw0_A 10-FTHFDH, 10-formyltet 31.8 69 0.0024 32.7 6.4 77 536-620 22-107 (329)
427 3db2_A Putative NADPH-dependen 31.8 1.2E+02 0.0042 31.1 8.6 76 733-818 20-96 (354)
428 3lp6_A Phosphoribosylaminoimid 31.2 2.9E+02 0.0099 24.8 11.3 123 744-868 10-148 (174)
429 1mb3_A Cell division response 30.8 2.1E+02 0.0073 23.1 10.0 106 744-857 3-119 (124)
430 2gkg_A Response regulator homo 30.2 1.9E+02 0.0066 23.4 8.3 106 743-857 6-123 (127)
431 3esl_A Checkpoint serine/threo 30.0 3.4E+02 0.011 25.1 12.0 49 252-300 95-145 (202)
432 2ayx_A Sensor kinase protein R 29.7 3.2E+02 0.011 26.2 10.8 108 742-857 129-245 (254)
433 2i2x_B MTAC, methyltransferase 29.6 1.2E+02 0.0041 29.6 7.5 103 756-868 141-253 (258)
434 3k4h_A Putative transcriptiona 29.4 69 0.0024 31.7 6.0 89 533-641 5-98 (292)
435 3o1l_A Formyltetrahydrofolate 29.3 3.2E+02 0.011 27.3 10.6 91 533-632 102-200 (302)
436 3egc_A Putative ribose operon 29.2 1.1E+02 0.0037 30.2 7.5 106 533-662 5-110 (291)
437 2bln_A Protein YFBG; transfera 29.1 79 0.0027 31.8 6.2 76 537-620 1-83 (305)
438 3gv0_A Transcriptional regulat 28.8 1.8E+02 0.0061 28.5 9.0 89 533-641 5-95 (288)
439 3q0i_A Methionyl-tRNA formyltr 28.8 1.2E+02 0.0042 30.6 7.6 78 535-620 6-93 (318)
440 4es6_A Uroporphyrinogen-III sy 28.7 74 0.0025 30.9 5.9 109 739-855 130-252 (254)
441 4fb5_A Probable oxidoreductase 28.5 42 0.0014 35.3 4.3 91 718-817 32-123 (393)
442 1boo_A Protein (N-4 cytosine-s 28.2 46 0.0016 34.0 4.4 35 788-823 251-285 (323)
443 3hzh_A Chemotaxis response reg 28.2 2.9E+02 0.0098 23.8 10.8 106 744-857 38-155 (157)
444 1dbw_A Transcriptional regulat 28.0 2.4E+02 0.0084 22.9 13.0 107 742-856 3-118 (126)
445 3t5v_B Nuclear mRNA export pro 28.0 89 0.003 33.5 6.6 57 6-62 183-249 (455)
446 3t5v_B Nuclear mRNA export pro 27.4 1.1E+02 0.0037 32.8 7.2 87 13-99 140-253 (455)
447 4fyk_A Deoxyribonucleoside 5'- 27.3 92 0.0031 27.5 5.4 75 782-857 61-140 (152)
448 1r1m_A Outer membrane protein 27.3 58 0.002 29.2 4.3 50 728-777 32-94 (164)
449 3eul_A Possible nitrate/nitrit 27.0 2.9E+02 0.0099 23.4 10.3 113 740-858 13-134 (152)
450 3r0j_A Possible two component 27.0 3.9E+02 0.013 25.3 11.0 109 741-857 22-139 (250)
451 2jba_A Phosphate regulon trans 27.0 2.5E+02 0.0086 22.7 9.3 104 744-855 4-118 (127)
452 3t5x_A PCI domain-containing p 27.0 1.1E+02 0.0038 28.5 6.5 33 34-66 15-47 (203)
453 3cg4_A Response regulator rece 26.9 1.7E+02 0.0059 24.5 7.6 108 741-856 6-124 (142)
454 1ydw_A AX110P-like protein; st 26.9 2E+02 0.0068 29.6 9.2 76 737-818 25-101 (362)
455 2p58_C Putative type III secre 26.8 2.5E+02 0.0086 22.6 9.2 18 74-91 47-64 (116)
456 2b4a_A BH3024; flavodoxin-like 26.8 2.5E+02 0.0084 23.4 8.5 77 740-821 13-98 (138)
457 3kke_A LACI family transcripti 26.7 1.5E+02 0.005 29.5 8.0 104 533-662 12-116 (303)
458 2crb_A Nuclear receptor bindin 26.6 95 0.0033 24.4 4.6 24 409-432 18-41 (97)
459 2crb_A Nuclear receptor bindin 26.5 1E+02 0.0034 24.3 4.7 27 68-94 16-42 (97)
460 3ors_A N5-carboxyaminoimidazol 26.5 3.4E+02 0.012 24.1 10.9 94 745-839 7-108 (163)
461 3tqq_A Methionyl-tRNA formyltr 26.4 1.1E+02 0.0038 30.8 6.8 77 536-620 2-88 (314)
462 3e9m_A Oxidoreductase, GFO/IDH 26.4 1.3E+02 0.0046 30.5 7.6 75 734-817 21-96 (330)
463 1meo_A Phosophoribosylglycinam 25.9 1.4E+02 0.0049 27.9 7.0 89 537-632 1-98 (209)
464 3esl_A Checkpoint serine/threo 25.9 4E+02 0.014 24.6 14.7 50 82-131 94-145 (202)
465 3en0_A Cyanophycinase; serine 25.6 1.9E+02 0.0065 28.7 8.2 88 722-816 36-149 (291)
466 1e2b_A Enzyme IIB-cellobiose; 25.6 1.4E+02 0.0048 24.3 6.0 61 755-819 20-80 (106)
467 1yio_A Response regulatory pro 25.4 3.8E+02 0.013 24.3 12.7 109 742-858 4-121 (208)
468 3snk_A Response regulator CHEY 25.3 1.7E+02 0.0057 24.4 7.0 108 742-857 14-131 (135)
469 3eod_A Protein HNR; response r 25.0 2.8E+02 0.0096 22.6 9.4 108 741-856 6-123 (130)
470 4gq4_A Menin; tumor suppressor 25.0 6E+02 0.021 26.4 12.6 84 370-458 301-398 (489)
471 4au1_A Precorrin-8X methylmuta 25.0 2E+02 0.0069 27.1 7.5 77 738-835 145-224 (229)
472 2qr3_A Two-component system re 24.9 2.9E+02 0.01 22.8 9.6 108 742-857 3-124 (140)
473 3rot_A ABC sugar transporter, 24.7 1.2E+02 0.004 30.2 6.7 40 535-574 2-41 (297)
474 2qx5_A Nucleoporin NIC96; mRNA 24.6 7.9E+02 0.027 27.6 15.2 29 410-439 540-570 (661)
475 3re2_A Predicted protein; meni 24.6 5.2E+02 0.018 26.3 10.6 44 391-434 276-324 (472)
476 3a10_A Response regulator; pho 24.6 2.6E+02 0.009 22.1 9.8 102 744-855 3-113 (116)
477 3cfy_A Putative LUXO repressor 24.5 3E+02 0.01 22.8 8.9 105 744-856 6-119 (137)
478 3a06_A 1-deoxy-D-xylulose 5-ph 24.3 86 0.0029 32.2 5.3 90 537-632 4-105 (376)
479 3ijp_A DHPR, dihydrodipicolina 24.2 90 0.0031 31.0 5.4 36 783-818 82-118 (288)
480 1r0k_A 1-deoxy-D-xylulose 5-ph 24.1 1.1E+02 0.0037 32.0 6.1 92 537-634 5-115 (388)
481 3t5x_A PCI domain-containing p 24.1 1.3E+02 0.0045 28.0 6.4 32 68-99 15-46 (203)
482 1zh2_A KDP operon transcriptio 23.9 2.8E+02 0.0095 22.1 9.2 103 744-854 3-113 (121)
483 3ic5_A Putative saccharopine d 23.7 2.8E+02 0.0097 22.2 9.2 79 734-819 21-100 (118)
484 1s8n_A Putative antiterminator 23.6 4E+02 0.014 24.1 10.0 109 743-859 14-131 (205)
485 3cnb_A DNA-binding response re 23.5 3.2E+02 0.011 22.7 11.2 107 742-855 8-126 (143)
486 3hv2_A Response regulator/HD d 23.4 3.4E+02 0.012 23.0 9.9 107 743-857 15-131 (153)
487 2gwr_A DNA-binding response re 23.4 4.6E+02 0.016 24.5 11.3 108 743-858 6-121 (238)
488 3lou_A Formyltetrahydrofolate 23.1 3.2E+02 0.011 27.1 9.3 92 533-633 92-191 (292)
489 3kyj_B CHEY6 protein, putative 22.9 3.4E+02 0.012 22.7 9.5 98 742-844 13-118 (145)
490 4hkt_A Inositol 2-dehydrogenas 22.8 2E+02 0.0067 29.2 8.1 74 733-817 18-92 (331)
491 2hh6_A BH3980 protein; 1017660 22.4 27 0.00091 28.9 0.9 69 781-874 30-110 (113)
492 3cg0_A Response regulator rece 22.2 3.3E+02 0.011 22.4 10.5 108 741-856 8-125 (140)
493 1om2_A Protein (mitochondrial 22.1 1E+02 0.0034 24.6 4.2 28 38-65 25-52 (95)
494 1h6d_A Precursor form of gluco 22.1 1.4E+02 0.0049 31.7 7.0 78 735-817 101-179 (433)
495 3luf_A Two-component system re 22.0 5.3E+02 0.018 24.7 11.2 108 741-856 123-242 (259)
496 4erh_A Outer membrane protein 22.0 75 0.0025 27.8 4.0 50 728-777 39-103 (148)
497 3crn_A Response regulator rece 22.0 3.3E+02 0.011 22.3 10.9 106 743-856 4-118 (132)
498 1v9c_A Precorrin-8X methyl mut 21.9 4.1E+02 0.014 24.8 8.9 71 741-834 127-199 (218)
499 2uwj_G Type III export protein 21.8 3.2E+02 0.011 22.0 8.6 17 39-55 45-61 (115)
500 3euw_A MYO-inositol dehydrogen 21.7 1.6E+02 0.0056 30.0 7.3 74 734-817 20-94 (344)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=4.8e-113 Score=1000.55 Aligned_cols=609 Identities=47% Similarity=0.806 Sum_probs=542.6
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 300 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
.|+++++++++|.++.+.|++++|+..|+++++++|++..+++++|.+|.++|++++|+..|+++++++|+++.+++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777777777777777777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH
Q 002431 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 459 (922)
.++..+|++++|++.|+++++++|++..+++++|.+|.++|++++|++.|+++++++|+++.++.+++.++...|+|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCccccee
Q 002431 460 DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRV 539 (922)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 539 (922)
...++++.++..+.....-.|...++..+.+..++.....++++++..+.........++..+|. ..+.+++||||
T Consensus 165 ~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~klrI 240 (723)
T 4gyw_A 165 DERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPK----DLKLSDGRLRV 240 (723)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCC----SSTTTTTCEEE
T ss_pred HHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhcccCccccCcc----cccccccccee
Confidence 88888888888888888888888899999999999888888888877655444433333332222 23356789999
Q ss_pred eeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-CHHHHHHHHHhCCCeEEEc
Q 002431 540 GYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-SSDMIAKLINEDKIQILIN 618 (922)
Q Consensus 540 g~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dil~~ 618 (922)
||+|+||++||+++++.+++++||+++|||++|+.++.+.+.++.+++..+++|+++.++ ++.+++++|++|+||||||
T Consensus 241 GyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIlid 320 (723)
T 4gyw_A 241 GYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVN 320 (723)
T ss_dssp EEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEEE
T ss_pred eeechhhccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhhccccccccCCcHHHHHHHHHhccceeEEe
Confidence 999999999999999999999999999999999999877777899999999999999998 6899999999999999999
Q ss_pred CCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCCCccccccC---
Q 002431 619 LNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDV--- 695 (922)
Q Consensus 619 ~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~--- 695 (922)
|+|||.++|+.+|++|||||||+|||||+|||++.|||+|+|.+++|++.+.+|+|++++||++++++++....+..
T Consensus 321 l~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~ 400 (723)
T 4gyw_A 321 MNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKK 400 (723)
T ss_dssp SCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSC
T ss_pred ccCCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987643211100
Q ss_pred --------------------------------------------------------------------------------
Q 002431 696 -------------------------------------------------------------------------------- 695 (922)
Q Consensus 696 -------------------------------------------------------------------------------- 695 (922)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 480 (723)
T 4gyw_A 401 AVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQIT 480 (723)
T ss_dssp EEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -------------------------CCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecC
Q 002431 696 -------------------------LDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRF 750 (922)
Q Consensus 696 -------------------------~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~ 750 (922)
+.+.....|..+|||++.|||||||++.|++|.++++|++||+++|||+|||..+
T Consensus 481 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~ 560 (723)
T 4gyw_A 481 INGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRF 560 (723)
T ss_dssp ETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEET
T ss_pred ccccccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 0001113789999999999999999999999999999999999999999999988
Q ss_pred ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHH
Q 002431 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 830 (922)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~ 830 (922)
+...+..|++.+++.||+++||+|.++++..+|++.|+.+|||||||||+||||++|||||||||||++|.+|+||+|+|
T Consensus 561 ~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s 640 (723)
T 4gyw_A 561 PAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAAS 640 (723)
T ss_dssp TGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHH
T ss_pred cHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHH
Confidence 88778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCcce
Q 002431 831 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSGQKPQHFK 910 (922)
Q Consensus 831 ~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~~~~~~~~ 910 (922)
+|+.+|++| ||+.|.++|+++|++|++|++.++++|+++|+++.++|+||.++|+++||++|++||++||+|++|+||+
T Consensus 641 ~l~~~gl~e-~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~~ 719 (723)
T 4gyw_A 641 QLTCLGCLE-LIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHMI 719 (723)
T ss_dssp HHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred HHHHcCCcc-cccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 002431 911 VTE 913 (922)
Q Consensus 911 ~~~ 913 (922)
|+.
T Consensus 720 ~~~ 722 (723)
T 4gyw_A 720 KPV 722 (723)
T ss_dssp C--
T ss_pred ccC
Confidence 975
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=100.00 E-value=5.3e-74 Score=629.93 Aligned_cols=352 Identities=16% Similarity=0.148 Sum_probs=318.5
Q ss_pred CCcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC----HHHHHHH
Q 002431 532 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----SDMIAKL 607 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 607 (922)
.+++++||||+|.+++.|+|++++.+++++ ||++|||+||+ ++..|+ ++ +..+++|+++.+++ +.+++++
T Consensus 271 ~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~D~-~t---r~~~d~f~~l~~~s~~~~~~~ia~~ 344 (631)
T 3q3e_A 271 RNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSVDQ-AG---QEVFDEFHLVAGDNMKQKLEFIRSV 344 (631)
T ss_dssp ETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTSCH-HH---HTTSSEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhhcEEEEEEe-CCCCCH-HH---HhcCcEEEECCCCCccccHHHHHHH
Confidence 467899999999999999999999999998 89999999999 665433 44 67889999999998 7899999
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCccceeecCCccccCC
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND 687 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~ 687 (922)
|++|+|||||||+|||.+.++.++++|||||||+|+|||+|||+++|||+|+|.+..| .+.+|+|++++||+++++++
T Consensus 345 Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~ 422 (631)
T 3q3e_A 345 CESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYV 422 (631)
T ss_dssp HHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCC
T ss_pred HHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccC
Confidence 9999999999999999877777778999999999999999999999999999998765 47899999999999999987
Q ss_pred CccccccCCCCCCCCCcCCCCCCCC--cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE--ecCChhhHHHHHHHHH
Q 002431 688 YKQKNMDVLDPNCQPKRSDYGLPED--KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL--LRFPAAGEMRLRAYAV 763 (922)
Q Consensus 688 ~~~~~~~~~~~~~~~~r~~~~l~~~--~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~--~~~~~~~~~~l~~~~~ 763 (922)
++.. .+.|..+|+|++ .+||||||++.|++|.++++|++|++++|+++||+ +|.++.....+.+.+.
T Consensus 423 p~~~---------~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~ 493 (631)
T 3q3e_A 423 PSAL---------APEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFI 493 (631)
T ss_dssp CCTT---------CCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHH
T ss_pred Cccc---------CCccccccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHH
Confidence 5421 235778899975 89999999999999999999999999999999864 4643333455556678
Q ss_pred HcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc
Q 002431 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (922)
Q Consensus 764 ~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~ 843 (922)
+.||+ +||+|.|.++..+|++.|+.+|||||||||+||+|++|||||||||||++|+++++|+|+|+|..+|++|++|+
T Consensus 494 ~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 494 KSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp HHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred HcCCC-ccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 89995 89999999999999999999999999999999999999999999999999999999999999999999993399
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002431 844 NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 903 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 903 (922)
+|+++|+++|++|++|++.|+++|+++++++.++++|| ..++++|+.|+++|++|.+.
T Consensus 573 ~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~~~ 630 (631)
T 3q3e_A 573 NTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFLKE 630 (631)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998899999 78999999999999999753
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=4.2e-65 Score=594.96 Aligned_cols=558 Identities=28% Similarity=0.410 Sum_probs=465.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
.|++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46788899999999988999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC
Q 002431 363 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS---GHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 363 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 439 (922)
++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCCCCHHHHHHHHHHHHhhhhhhhhccCCCC
Q 002431 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519 (922)
Q Consensus 440 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (922)
...+..+. ..++......++.|....- ..+
T Consensus 162 ~~~~~~l~-------------------------------------------~~~~~~~~~~~~~~~~~~~------~~~- 191 (568)
T 2vsy_A 162 VEPFAFLS-------------------------------------------EDASAAEQLACARTRAQAI------AAS- 191 (568)
T ss_dssp SCHHHHTT-------------------------------------------SCCCHHHHHHHHHHHHHHH------HTT-
T ss_pred cChHHHhC-------------------------------------------CCCHHHHHHHHHHHHHhcc------Ccc-
Confidence 77665543 0112223333444433211 000
Q ss_pred CCCCCCCccccCCCcccceeeeecCCCCCChhHhhhhHHhhc--CCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC
Q 002431 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGM--HNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS 597 (922)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~rig~~s~~~~~h~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (922)
..|. +.....+.++||||+++++|..|++++++.+++++ +++.+|||++|+.++...+.+.++++..+ .|+.+.
T Consensus 192 -~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 267 (568)
T 2vsy_A 192 -VRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT 267 (568)
T ss_dssp -CCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT
T ss_pred -cCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECC
Confidence 0011 11122457899999999999999999999999999 99999999999986543345677788877 888888
Q ss_pred CCCHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCcCccCCCcccee
Q 002431 598 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLV 677 (922)
Q Consensus 598 ~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~~~e~~~ 677 (922)
.++...+.+.|+++++||||++++|++++++.+++.+++|+|++|+|||.++|++.+||+++|.++++++....|.|++.
T Consensus 268 ~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~ 347 (568)
T 2vsy_A 268 ALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVL 347 (568)
T ss_dssp TCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEE
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999988777889999
Q ss_pred ecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEec-CChhhHH
Q 002431 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEM 756 (922)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~ 756 (922)
.+|+.+.... . .++....+.|+++|++++.++|++.....|+++.++++|.+|+++.|+++|+|+| +|+. .+
T Consensus 348 ~ipn~~~~~~---~---~~~~~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~-~~ 420 (568)
T 2vsy_A 348 RLQGAFQPSD---T---SRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA-DA 420 (568)
T ss_dssp ECSSCSCCCC---T---TCCCCCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH-HH
T ss_pred cCCCcCCCCC---C---CCCCCCCCCccccCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHH-HH
Confidence 9998432211 0 0112234579999999988887665544499999999999999999999999999 7765 88
Q ss_pred HHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC
Q 002431 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 757 ~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
.+++.+.++|++.++|+|+|.++..++..+|+.+||||+||++++|+|++|||+||+|||+++|..+.+++|++++..+|
T Consensus 421 ~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g 500 (568)
T 2vsy_A 421 RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG 500 (568)
T ss_dssp HHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCC
Confidence 99999999999448999999999999999999999999999995599999999999999999999999999999999999
Q ss_pred CCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhc
Q 002431 837 LGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCS 902 (922)
Q Consensus 837 ~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~ 902 (922)
++| +|.+|+++|++++.+|++|++.+..++++.+++......|+++.++++++++|+++|++||.
T Consensus 501 ~~e-~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 501 LDE-MNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp CGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred Chh-hhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999998763346799999999999999999999986
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-42 Score=405.41 Aligned_cols=447 Identities=17% Similarity=0.164 Sum_probs=409.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+..++..+.+.|++++|+..|++++...|+ ...++.++.++...|++++|+..|++++.. |.++.++..++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHh
Confidence 356788899999999999999999988885 477889999999999999999999998765 677899999999999999
Q ss_pred CHHHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--
Q 002431 82 DIDLAIRYYLVAIELR----------------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN-- 143 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-- 143 (922)
++++|++.|++..... +.+..+|+.++.+|.+.|++++|++.|+++++.+|++..++..++.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 9999999998643322 2348899999999999999999999999999999999988776644
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 144 ------------------------------------LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 144 ------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (922)
.+.+.|++++|+..|+++++. |.+..++..++.++.+.|++++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHH
Confidence 334678899999999998887 7888999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002431 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (922)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 266 (922)
|+..|+++++.+|++..++..++.++...|++++|...++++++..|+ ..++..++.+|.+.|++++|++.|+++++.+
T Consensus 324 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998887 8889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
|.+..+|..++.++...|++++|++.|+++++..|++..++..++.+|.+.|++++|...|+++++..|.++.+|..++.
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 347 IYKQQGNYADAISCYNEVLRI------DPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
++.+.|++++|++.|+++++. +|++ ..++..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|.+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 999999999999999999987 5554 789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (922)
|++++|.+.|+++++++|+++.++..+...+.
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999988887764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-41 Score=377.20 Aligned_cols=383 Identities=42% Similarity=0.677 Sum_probs=276.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..+++.|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 56788889999999999999999888898888888899999999999999999998888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHh
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 241 (922)
+.+|++..++..++.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+ ..++..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 8888888888888888888888888888888888888887777777777777777777777777766666665 555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|+++.++..++.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666555555555555555555555555555555555555555555555555555554444444
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
+|+..|+++++..|++..++..+|.++.+.|++++|+..|+++++.+|+++.+++.+|.++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444444444444444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.2e-41 Score=373.18 Aligned_cols=382 Identities=30% Similarity=0.424 Sum_probs=281.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
+|..+++.|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 56677777888888888877777777777777777777777788888887777777777777777777777777778888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|++.|+++++.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88877777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 277 (922)
+|++..++..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..+++++..+|++..++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 7777777777777777777777777777777777766 666667777777777777777777777777777766777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHH
Q 002431 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (922)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (922)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++..++.++...|++++|
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777776666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..++++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++..+++.+|.++..+|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666666666666666666666666666666555
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-40 Score=385.58 Aligned_cols=436 Identities=16% Similarity=0.103 Sum_probs=406.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
.+...+..++..+.+.|++++|+..|++++...|+. ..++.++.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467788999999999999999999999999988855 77889999999999999999999998765 5678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALN----------------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
|.+.|++++|++.|++..... +.+..++..++.++.+.|++++|+..|+++++.+|++..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999999633222 2247899999999999999999999999999999999888776
Q ss_pred HHH--------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 175 LAG--------------------------------------LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 175 la~--------------------------------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
++. .|.+.|++++|++.|+++++. |.+..++..++.++.+.
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh
Confidence 643 344678999999999999887 67899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
|++++|+..|+++++..|+ ..++..++.++...|++++|+..++++++..|++..++..++.++.+.|++++|++.|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999887 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002431 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (922)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (922)
+++..|.+..++..++.+|.+.|++++|+..|+++++..|++..++..++.+|.+.|++++|++.|+++++..|.++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 376 VNRGNTYKEIGRVTDAIQDYIRAITI------RPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
..+|.++.+.|++++|++.|+++++. +|++ ..++..++.+|.+.|++++|++.|+++++.+|+++.++..++.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999998 6665 7899999999999999999999999999999999999999999
Q ss_pred hhcccCChhhHhHHHHHHHHH
Q 002431 449 TLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 449 ~~~~~~~~~~a~~~~~~~~~~ 469 (922)
.+...|+|++|...++++.++
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999888774
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-36 Score=352.32 Aligned_cols=412 Identities=17% Similarity=0.222 Sum_probs=307.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------------------HHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHS----------------------------------NLGNLMKAQGLVQEAYSCY 158 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------------------------~la~~~~~~g~~~~A~~~~ 158 (922)
..|++++|+..|+ .+..+|+....+. .....+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 5555555555553 4444433332221 1112222333333333333
Q ss_pred HHHHhhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHH
Q 002431 159 LEALRIQPTFAIAWSNLAGLFM--------ESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAI 223 (922)
Q Consensus 159 ~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~ 223 (922)
.+.....+........+...+. ..|++++|+..++++++.+|+++. ++..+|.++...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3333333333334444443332 335899999999999999999865 5778889999999999999
Q ss_pred HHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002431 224 MCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303 (922)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (922)
..++++++..|+...+..++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD------GLVN 377 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~ 377 (922)
..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++..|.+.. .+..
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765433 4677
Q ss_pred HHHHHHHh----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 378 RGNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 378 l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
+|.++... |++++|+..|+++++.+|++..++..+|.+|...|++++|++.|+++++++|+++.....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 78999999 999999999999999999999999999999999999999999999999999999877543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=345.89 Aligned_cols=442 Identities=14% Similarity=0.128 Sum_probs=329.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666665 45666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC---CRQALALNPLLVDAHSNLGNLM--KAQGLVQEAYS 156 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~p~~~~~~~~la~~~--~~~g~~~~A~~ 156 (922)
++++|+..|+++++..|.+......+...+........+.+. ++.+... |+........+... ........ ..
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTS-MA 165 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHH-HH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHH-HH
Confidence 666666666666666554433332222222222111111111 1111110 10000000000000 00000000 00
Q ss_pred HHHHHHhh--------CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--CC-------CCHHHHHHHHH
Q 002431 157 CYLEALRI--------QPTFAIAWSNLAGLFME---SGDLNRALQYYKEAVK-----L--KP-------TFPDAYLNLGN 211 (922)
Q Consensus 157 ~~~~al~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~p-------~~~~~~~~l~~ 211 (922)
.+...... .|++...+..++..+.. .|++++|+..++++++ . .| .+..++..+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 01000110 15557888888888886 8999999999999988 5 43 34568889999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 212 VYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
++...|++++|+..++++++..|+...+..++.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999988878889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
.++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH------HHHHHHHHHHH---hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 372 AD------GLVNRGNTYKE---IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 372 ~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.. ++..+|.++.. .|++++|+..++++++.+|++..++..+|.+|...|++++|...|+++++++|+++.+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 54 99999999999 9999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 002431 443 TCNL 446 (922)
Q Consensus 443 ~~~l 446 (922)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=341.72 Aligned_cols=409 Identities=14% Similarity=0.111 Sum_probs=334.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++..|.+..........+....
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999876555444443333332
Q ss_pred CHHH---HHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-
Q 002431 82 DIDL---AIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKA- 147 (922)
Q Consensus 82 ~~~~---A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~- 147 (922)
.... ++..++.+... |+........+.. .......... ..+...... .|++...+..++..+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHTTC----------------------------CCCCHHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 2222 22223333211 1111111110000 0000111111 111111111 14457888888888876
Q ss_pred --cCCHHHHHHHHHHHHh-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 148 --QGLVQEAYSCYLEALR-----I--Q-------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211 (922)
Q Consensus 148 --~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 211 (922)
.|++++|+..|+++++ . . |.+..++..+|.++...|++++|+..++++++..|. ..++..++.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 8999999999999988 4 3 555778999999999999999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 212 VYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (922)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 290 (922)
++...|++++|+..+++++...|+ ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999887 8889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch------hhhhHHHHHHH---cCCHHHHHHHH
Q 002431 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA------PFNNLAVIYKQ---QGNYADAISCY 361 (922)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~ 361 (922)
..++++++..|+++.++..+|.++...|++++|...|++++...|.+.. ++..+|.++.. .|++++|+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888765 89999999999 99999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (922)
+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877663
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.4e-35 Score=342.24 Aligned_cols=399 Identities=18% Similarity=0.208 Sum_probs=347.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
.+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------------
Q 002431 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP---------------------- 203 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------------- 203 (922)
...|++++|+..|+ ++...|+....+ ...+...+...+|+..+++++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999995 888877765543 2344555666788888888876533211
Q ss_pred ---------------HHHHHHHHH--------HHHcCChHHHHHHHHHHHhhCCC--------hhHHHhHHHHHHHcCCh
Q 002431 204 ---------------DAYLNLGNV--------YKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQA 252 (922)
Q Consensus 204 ---------------~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~ 252 (922)
.....+... ....|++++|+..++++++..|+ ..++..++.++...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 122222222 23345899999999999999987 33678889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 253 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
++|+..+++++..+|+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH------
Q 002431 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA------ 406 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------ 406 (922)
..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 407 EAHANLASAYKDS----------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 407 ~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
..+..++.++... |++++|+..|+++++.+|+++.++..++..+...|++++|...++++.++
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3466778899998 99999999999999999999999999999999999999999999988875
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.1e-33 Score=315.60 Aligned_cols=346 Identities=16% Similarity=0.181 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
....+...+.+++..+|.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
++.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..++.++.. .
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~ 144 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM----------------------Q 144 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------H
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------H
Confidence 888888888888888888888888888888888888888777 666655444211 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
.+..++..+...|++++|+..++++++..|.+..++..++.++...|++++|+..|+++++..|+ ..++..++.++...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 12233444555555555555555555555555555555555555555555555555555554444 44555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChH----HHHhHHHH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNL------------GNALKDVGRVDEAIQCYNQCLSLQPSHPQ----ALTNLGNI 313 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~ 313 (922)
|++++|+..++++++..|++...+..+ +.++...|++++|+..|+++++..|+++. .+..+|.+
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 555555555555555555554444333 66666666666666666666666666533 45555566
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+.+.|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 66666666666666666555555555566666666666666666666666666666655555555543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.4e-33 Score=315.41 Aligned_cols=325 Identities=15% Similarity=0.196 Sum_probs=243.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFA---DAWSNL------------ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999988 777666 445777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (922)
..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|++...+..+..+..
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~------------ 256 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK------------ 256 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH------------
Confidence 77777777777777777777777777777777777777777777777777777777666554421100
Q ss_pred HHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 227 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
......++.++...|++++|+..|+++++..|++. ..+..+|.++...|++++|+..++++++..|+
T Consensus 257 ---------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 257 ---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp ---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 01112235555555666666666666655555542 24555566666666666666666666666666
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 303 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
++.++..+|.++...|++++|...|+++++..|++..++..++.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 666666666666666666666666666666666666555555544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.3e-30 Score=283.07 Aligned_cols=341 Identities=18% Similarity=0.163 Sum_probs=235.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 002431 146 KAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 222 (922)
...|++++|+..|+++++..| ++..++..++.++. ...+..++.++...|++++|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHHH
Confidence 777777777777777766666 55555555554322 11233445556666666666
Q ss_pred HHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 223 IMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 223 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
+..++++++..|+ ..++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6666666665554 555555566666666666666666666655555555555666666666666666666666655555
Q ss_pred CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHH
Q 002431 302 SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD----GLVN 377 (922)
Q Consensus 302 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 377 (922)
++..++..+..+. .......+|.++...|++++|+..++++++..|+++. ++..
T Consensus 220 ~~~~~~~~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 220 DHKRCFAHYKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp TCHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 5555433322211 0111234578888999999999999999999888874 4667
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|...|+++++++|+++.++..+....
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999988877765544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.9e-30 Score=283.74 Aligned_cols=345 Identities=17% Similarity=0.209 Sum_probs=290.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
...|++++|+..|+++++.+| ++..++..++.+... ..+..++.++...|++++|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------QRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH----------------------HHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999 888888888776431 2356788899999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 267 (922)
+..++++++..|.++.++..++.++...|++++|+..++++++..|+ ...+..++.++...|++++|+..++++++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999987 88999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch----hhhh
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA----PFNN 343 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~ 343 (922)
++..++..+..+. .......+|.++...|++++|+..++++++..|++.. .+..
T Consensus 220 ~~~~~~~~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 220 DHKRCFAHYKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp TCHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9987655442221 1122333455555555555555555555555555442 2455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...+
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777778888888888888888888888888888888888888888888888888888888777777777766543
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-31 Score=299.30 Aligned_cols=389 Identities=15% Similarity=0.077 Sum_probs=272.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRL---------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL------- 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 96 (922)
...+..+|.++..+|++++|++.|++++++ +|....++..+|.+|..+|++++|+.+|++++++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 556777888888888888888888888764 4556677778888888888888888888887765
Q ss_pred -CCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHH
Q 002431 97 -RPNFADAWSNLASAYMRK--GRLNEAAQCCRQALALNPLLVDAHSNLGNLMK---AQGLVQEAYSCYLEALRIQPTFAI 170 (922)
Q Consensus 97 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~ 170 (922)
.+..+.++..+|.++... +++++|+..|+++++.+|+++.++..++.++. ..++.++|++.++++++++|++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 234566777777666554 46788888888888888888887777776644 346667788888888888888877
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHH
Q 002431 171 AWSNLAGLFMES----GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245 (922)
Q Consensus 171 ~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 245 (922)
++..++..+... +++++|.+.+++++..+|....++..+|.++...|++++|+..++++++..|+ ..++..+|.+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777655443 56677888888888888888888888888888888888888888888887777 6677777777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAAS 325 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 325 (922)
|...+....+.. ....+......+.+++|+..++++++.+|.+..++..+|.++...|++++|+.
T Consensus 291 y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 291 YRAKVFQVMNLR---------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 654322111110 01111122223457889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCch---hhhhHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 326 YYKATLAVTTGLSA---PFNNLAVI-YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 326 ~~~~a~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
.|+++++..+++.. .+..++.+ +...|++++|+..|+++++++|.+..... ....+.+.++++++.
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHh
Confidence 99999998877543 35566654 45789999999999999999998865332 234556778899999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
+|+++.++..||.+|...|++++|+++|+++++++|.+|.+...+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999999999998877654
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=296.83 Aligned_cols=389 Identities=14% Similarity=0.034 Sum_probs=302.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------C
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYER---------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--------P 64 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p 64 (922)
+..+|.++...|++++|++.|+++++. +|....++..+|.+|..+|++++|+..+++++++. +
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 456899999999999999999999864 46667889999999999999999999999998763 3
Q ss_pred CcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 65 RFAECYGNMANAWKEK--GDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 65 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
..+.++..+|.++... +++++|+.+|+++++.+|+++.++..++.++.. .++.++|++.++++++.+|++..++.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 4578888888887765 479999999999999999999999999888654 57888999999999999999999998
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002431 140 NLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215 (922)
Q Consensus 140 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 215 (922)
.++..+.. .+++++|...+++++..+|.+..++..+|.+|...|++++|+..++++++.+|++..++..+|.+|..
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 88877665 46788999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002431 216 LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (922)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (922)
.+....+.. ....+......+.+++|+..++++++.+|....++..+|.++...|++++|+.+|++
T Consensus 294 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 294 KVFQVMNLR--------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhHH--------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 432221111 111112222334578899999999999999999999999999999999999999999
Q ss_pred HHhhCCCChH---HHHhHHHH-HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002431 296 CLSLQPSHPQ---ALTNLGNI-YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (922)
Q Consensus 296 al~~~p~~~~---~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (922)
+++..+++.. ++..++.+ +...|++++|+..|++++++.|.+.... +....+.++++++++.+|.+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~~ 429 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGAD 429 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC-C
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCCC
Confidence 9998877643 45566654 4578999999999999999998865432 23455677888999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.++..+|.++...|++++|+++|+++++.+|.++.+...+|.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 9999999999999999999999999999999999888877763
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.1e-26 Score=265.27 Aligned_cols=378 Identities=16% Similarity=0.121 Sum_probs=237.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q 002431 19 LEHSNSVYERNPLRTDNLLLLGAIYYQ----LHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYY 90 (922)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 90 (922)
+..++++.+ +.++.+++.+|.+|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 444444433 3466777777777776 67777777777777664 456677777777777 77777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 002431 91 LVAIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEAL 162 (922)
Q Consensus 91 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 162 (922)
+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+..|+++.
T Consensus 103 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 103 KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 777654 356677777777776 66777777777777654 356677777777766 666777777777766
Q ss_pred hhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002431 163 RIQPTFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 234 (922)
+. .++.++..++.+|.. .+++++|+.+|+++.+. .++.++..++.+|.. .+++++|+.+|+++.+. .
T Consensus 179 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~ 253 (490)
T 2xm6_A 179 EQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G 253 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T
T ss_pred HC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C
Confidence 54 456666677777666 66777777777766654 345666666666665 56666666666666654 2
Q ss_pred ChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCChH
Q 002431 235 NAIAFGNLASTYYE----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-----GRVDEAIQCYNQCLSLQPSHPQ 305 (922)
Q Consensus 235 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~~~ 305 (922)
+..++..++.++.. .+++++|+.+|+++.+. .+..+++.+|.++... +++++|+..|+++.+. .++.
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDAT 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence 35556666666666 66666666666666543 3455666666666665 6666666666666654 3455
Q ss_pred HHHhHHHHHHHcC---ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002431 306 ALTNLGNIYMEWN---MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNR 378 (922)
Q Consensus 306 ~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 378 (922)
+++.+|.+|...| ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6666666665544 555666666666554 345556666666655 55666666666665553 245556666
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHH
Q 002431 379 GNTYKE----IGRVTDAIQDYIRAITIRPT---MAEAHANLASAYK 417 (922)
Q Consensus 379 ~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~ 417 (922)
|.+|.. .+++++|..+|+++++.+|+ ++.+...++.++.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 666665 55666666666666665532 5555555555444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.9e-27 Score=274.46 Aligned_cols=428 Identities=11% Similarity=0.048 Sum_probs=317.0
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 22 SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 22 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+.+.|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678888999999999999984 7889999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhh
Q 002431 102 DAWSNLASA-YMRKGRLNEAAQ----CCRQALAL---NPLLVDAHSNLGNLMKA---------QGLVQEAYSCYLEALRI 164 (922)
Q Consensus 102 ~~~~~la~~-~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~ 164 (922)
..|..++.. ....|++++|.+ .|++++.. +|.+...|..++..... .|++++|..+|+++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 788888754 345677777665 77777654 46677888888877765 6888899999999888
Q ss_pred CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH------HHhh----
Q 002431 165 QPTFA--IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR------AVQT---- 232 (922)
Q Consensus 165 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~---- 232 (922)
.|... ..|..........|. ..+.. .+ ....+++.+|...+.+ .++.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~----~l----------------~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKK----MI----------------EDRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHH----HH----------------HTTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHH----HH----------------HHhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45432 233332222111111 00000 00 0112344555554443 2221
Q ss_pred -CCC--------hhHHHhHHHHHHHc----CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------cCCHH-
Q 002431 233 -RPN--------AIAFGNLASTYYER----GQA----DMAILYYKQAIGCDPRFLEAYNNLGNALKD-------VGRVD- 287 (922)
Q Consensus 233 -~p~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~~- 287 (922)
.|. ...|.......... ++. .+++..|++++..+|.+..+|..++..+.. .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 222 12333333222221 222 467788888888888888888888888875 68876
Q ss_pred ------HHHHHHHHHHh-hCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc-hhhhhHHHHHHHcCCHHHHHH
Q 002431 288 ------EAIQCYNQCLS-LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS-APFNNLAVIYKQQGNYADAIS 359 (922)
Q Consensus 288 ------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 359 (922)
+|...|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|++
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888887 6888888888888888888888888888888888888775 578888888888888888888
Q ss_pred HHHHHHccCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 360 CYNEVLRIDPLAADGLVNRGNT-YKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 360 ~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.++..++.++.+.|+.++|..+|+++++..|.
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 8888888888777766666655 345888888888888888888888888888888888888888888888888888776
Q ss_pred CHH----HHHHHHHhhcccCChhhHhHHHHHHHHHHHHH
Q 002431 439 FPE----ATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQ 473 (922)
Q Consensus 439 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 473 (922)
++. .|...+......|+.+++..+.+++.+.+.+-
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 654 67777777777788888888888888877643
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=3.2e-27 Score=272.57 Aligned_cols=390 Identities=14% Similarity=0.146 Sum_probs=312.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 56 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
++++++.+|.+..+|..++.. .+.|++++|...|+++++..|.+..+|..++..+.+.|++++|..+|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678889999999999999984 7899999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 002431 136 DAHSNLGNL-MKAQGLVQEAYS----CYLEALRI---QPTFAIAWSNLAGLFME---------SGDLNRALQYYKEAVKL 198 (922)
Q Consensus 136 ~~~~~la~~-~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~ 198 (922)
+.|..++.. ....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+|+++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 788888754 445677776665 77777764 56677888888877665 6888999999999988
Q ss_pred CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHH------HHhc-----
Q 002431 199 KPTFP--DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQ------AIGC----- 265 (922)
Q Consensus 199 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~------~l~~----- 265 (922)
.|... ..+..........|. ..+. ..+. ...+++.+|...+++ .++.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~----~~l~---------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAK----KMIE---------------DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHH----HHHH---------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHH----HHHH---------------HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 46542 222222222111111 0011 1110 123456666666654 3322
Q ss_pred CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhhCCCChHHHHhHHHHHHH-------cCChh--
Q 002431 266 DPRF-------LEAYNNLGNALKDV----GRV----DEAIQCYNQCLSLQPSHPQALTNLGNIYME-------WNMLP-- 321 (922)
Q Consensus 266 ~p~~-------~~~~~~l~~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-- 321 (922)
.|.. ...|.......... ++. .+++..|++++..+|.++.+|..++..+.. .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 3332 24555554433332 232 478899999999999999999999999986 79987
Q ss_pred -----HHHHHHHHHHh-cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCHHHHHHH
Q 002431 322 -----AAASYYKATLA-VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQD 394 (922)
Q Consensus 322 -----~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~ 394 (922)
+|...|+++++ ..|++..+|..++..+...|++++|...|+++++..|.++ .+|..++.++.+.|++++|...
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999997 7999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHH
Q 002431 395 YIRAITIRPTMAEAHANLASA-YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 468 (922)
|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.++.+++..+...|+.+++...|+++..
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999999998887777776665 44699999999999999999999999999999999999999999999998875
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-28 Score=263.87 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=240.2
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002431 22 SNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 22 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (922)
..+.+...+.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34555566778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (922)
Q Consensus 102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (922)
.++..+|.++...| ++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|++...+..++.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------CC-hhHHHhHHHHHHHcC
Q 002431 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---------PN-AIAFGNLASTYYERG 250 (922)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~-~~~~~~l~~~~~~~g 250 (922)
..|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.. |. ..++..++.++...|
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998999999999999999999999998888764 22 456666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHH
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (922)
++++|+..++++++.+|++..++..+|.++...|++++|...++++++.+|+++.++..++.++
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666655
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.5e-28 Score=263.55 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002431 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (922)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 214 (922)
...+..++..+...|++++|+..|+++++.+|.+...+..++.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcC-ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 215 ALG-MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQC 292 (922)
Q Consensus 215 ~~g-~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 292 (922)
..| ++++|+..++++++..|+ ..++..++.++...|++++|+..++++++..|+....+..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444 344444444444443333 333344444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHcCCHHHHHHHHHH
Q 002431 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT---------TGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (922)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (922)
++++++..|+++.++..+|.++...|++++|...++++++.. |....++..+|.++...|++++|+..+++
T Consensus 182 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433 33344555555555555555555555555
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (922)
+++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=5e-26 Score=259.79 Aligned_cols=379 Identities=16% Similarity=0.137 Sum_probs=341.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 002431 51 MCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KGRLNEAAQ 122 (922)
Q Consensus 51 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 122 (922)
.++..++++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34556665544 5789999999999999 99999999999999986 678999999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGDLNRALQYYKE 194 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 194 (922)
+|+++.+. .++.++..+|.++.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+++|++
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999875 488999999999999 89999999999999875 578899999999998 8899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcC
Q 002431 195 AVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE----RGQADMAILYYKQAIGCD 266 (922)
Q Consensus 195 ~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 266 (922)
+.+. .++.++..+|.+|.. .+++++|+.+|+++.+.. +..++..++.+|.. .+++++|+.+|+++.+.
T Consensus 177 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 252 (490)
T 2xm6_A 177 AAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ- 252 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-
T ss_pred HHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 9886 578999999999998 899999999999998763 57889999999997 89999999999999875
Q ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc-----CChhHHHHHHHHHHhcCCCC
Q 002431 267 PRFLEAYNNLGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-----NMLPAAASYYKATLAVTTGL 337 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~ 337 (922)
.+..+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++.+. .+
T Consensus 253 -~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~ 327 (490)
T 2xm6_A 253 -GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GD 327 (490)
T ss_dssp -TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TC
T ss_pred -CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CC
Confidence 567799999999999 89999999999999865 5788999999999998 9999999999999886 56
Q ss_pred chhhhhHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 338 SAPFNNLAVIYKQQG---NYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 338 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
+.+++.+|.+|...| ++++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+++
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 788999999999877 899999999999987 679999999999999 899999999999999864 588999
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHhh
Q 002431 411 NLASAYKD----SGHVEAAIKSYKQALLLRPD---FPEATCNLLHTL 450 (922)
Q Consensus 411 ~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~ 450 (922)
.||.+|.. .+++++|..+|+++++.+|+ ++.+..++...+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 99999999 89999999999999999955 777777766543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=9e-28 Score=263.72 Aligned_cols=292 Identities=17% Similarity=0.213 Sum_probs=208.5
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHH
Q 002431 181 ESGDLNRALQ-YYKEAVKLKPTFP----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADM 254 (922)
Q Consensus 181 ~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 254 (922)
..|++++|+. .+++++...|+++ ..++.+|..+...|++++|+..|+++++..|+ ..++..++.++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455666665 6665555555443 34556666666666666666666666666555 5566666666666666666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH----------------hHHHHHHHcC
Q 002431 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALT----------------NLGNIYMEWN 318 (922)
Q Consensus 255 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~ 318 (922)
|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+...+. .++.++ ..|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 666666666666666666666666666666666666666666666666655443 455555 778
Q ss_pred ChhHHHHHHHHHHhcCCC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTG--LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
++++|+..|+++++..|. +..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888 677788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHhhcccCChhhHhHHHHH
Q 002431 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF-----------PEATCNLLHTLQCVCSWEDRDRMFSE 465 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 465 (922)
++++.+|++..++..+|.+|.+.|++++|+..|++++++.|++ ..++..+..++...|+++++...+.+
T Consensus 276 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 276 RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 8888888888888888888888888888888888888888777 77888888888888888888877777
Q ss_pred HHHHHHHH
Q 002431 466 VEGIIRRQ 473 (922)
Q Consensus 466 ~~~~~~~~ 473 (922)
..+.+++.
T Consensus 356 ~l~~~~~~ 363 (368)
T 1fch_A 356 DLSTLLTM 363 (368)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=8.1e-28 Score=264.07 Aligned_cols=306 Identities=19% Similarity=0.193 Sum_probs=190.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 42 IYYQLHDYDMCIA-RNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116 (922)
Q Consensus 42 ~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 116 (922)
++...|++++|+. .|++++...|++ ...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566788889988 888888887765 35688889999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 117 LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAV 196 (922)
Q Consensus 117 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+...+..++....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG---------------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh----------------
Confidence 9999999999998888888888889999999999999999999888888887665543211100
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 002431 197 KLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAY 273 (922)
Q Consensus 197 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 273 (922)
.......+..++.++ ..|++++|+..++++++..|+ ..++..++.++...|++++|+..+++++..+|++..++
T Consensus 178 --~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 178 --GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 000001111233333 445555555555555555444 34455555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC-----------chhhh
Q 002431 274 NNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-----------SAPFN 342 (922)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~ 342 (922)
..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|...|+++++..|++ ..+|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555544 45566
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHc
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLR 366 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~ 366 (922)
.++.++...|++++|..+++++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHhCChHhHHHhHHHHHH
Confidence 666666666666666655554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=254.18 Aligned_cols=262 Identities=19% Similarity=0.219 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc
Q 002431 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (922)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 249 (922)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|+ ..++..++.++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 36666666666667777777776666666666666666666666666666666666666666665 66666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHhHHHHHHHc
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYN----------NLGNALKDVGRVDEAIQCYNQCLSLQPS--HPQALTNLGNIYMEW 317 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 317 (922)
|++++|+..++++++..|++...+. .++.++...|++++|+.+++++++..|. ++.++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 6666666666666666665444433 3477777778888888888888888777 777778888888888
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (922)
|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888877778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 398 AITIRPT------------MAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 398 al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
++++.|+ +..++..++.++..+|+.+.|....++.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8877665 2467777888888888877777666553
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=3.9e-26 Score=250.40 Aligned_cols=266 Identities=20% Similarity=0.220 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34478888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 002431 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNL----------AGLFMESGDLNRALQYYKEAVKLKPT--FPDAYLNLGNVYK 214 (922)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 214 (922)
..|++++|+..|+++++..|++...+..+ +.++...|++++|+..++++++..|. ++.++..+|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888888888777665555444 55555555555555555555555555 4445555555555
Q ss_pred HcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
..|++++|+..|+ ++++..|++..++..+|.++...|++++|+..|+
T Consensus 225 ~~g~~~~A~~~~~---------------------------------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 225 LSGEFNRAIDAFN---------------------------------AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHTCHHHHHHHHH---------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH---------------------------------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444444 4444455555555555555555555555555555
Q ss_pred HHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCC------------CchhhhhHHHHHHHcCCHHHHHHHHH
Q 002431 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------------LSAPFNNLAVIYKQQGNYADAISCYN 362 (922)
Q Consensus 295 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (922)
++++..|+++.++..+|.++...|++++|...|+++++..|+ +..+|..++.++...|+.+.|....+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555555555555555555555555555555555555555443 24556666666666676666666655
Q ss_pred HHH
Q 002431 363 EVL 365 (922)
Q Consensus 363 ~al 365 (922)
+.+
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 533
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=2.6e-25 Score=239.39 Aligned_cols=280 Identities=16% Similarity=0.122 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 216 (922)
.++.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|++..++..++.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH-HH-HHHHcCCHHHHHHHH
Q 002431 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL-GN-ALKDVGRVDEAIQCY 293 (922)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~-~~~~~g~~~~A~~~~ 293 (922)
|++++|+..++++++..|+ ...+..+... .|... ....+ +. ++...|++++|+..+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDID-DLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHH-HHHHHHHhHHHHHcccHHHHHHHH
Confidence 6666666666666666555 2222211000 00000 11122 33 466677788888888
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
+++++..|.++.++..+|.++...|++++|...++++++..|++..++..+|.++...|++++|+..++++++..|.+..
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 241 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------------MAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
++..+|.++...|++++|+..++++++..|+ +..++..++.++...|++++|...++++++..|
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888887 778888888888888888888888877766543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=4.9e-25 Score=237.26 Aligned_cols=270 Identities=21% Similarity=0.187 Sum_probs=219.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888887778888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNL--------------GN-LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA 176 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 176 (922)
...|++++|+..++++++.+|.+...+..+ +. ++...|++++|+..++++++..|.+..++..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 888888888888888887777766666555 55 577788888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHH
Q 002431 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 255 (922)
.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|+ ..++..++.++...|++++|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 88888888888888888888888888888888888888888888888888888888877 77888888888888888888
Q ss_pred HHHHHHHHhcCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 256 ILYYKQAIGCDPR------------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP 301 (922)
Q Consensus 256 ~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 301 (922)
+..+++++...|+ ...++..++.++...|++++|...++++++..|
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888888888 778888999999999999999998887776544
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=3.7e-25 Score=240.07 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=205.1
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
..+|++..++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|+ +++|+..|+++++++|++..+|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44566778888888888888888888888888888888888888888888888886 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCC
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SGD 184 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 184 (922)
.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++.+|++..+|+.++.++.. .|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888 555
Q ss_pred HHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC------
Q 002431 185 LNRA-----LQYYKEAVKLKPTFPDAYLNLGNVYKALG--MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERG------ 250 (922)
Q Consensus 185 ~~~A-----~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 250 (922)
.++| +..+++++.++|++..+|+.++.++...| ++++|++.+.++ +..|+ ..++..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 4777 47788888888888888888888888777 577777777776 66665 666777777777653
Q ss_pred ---ChHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHH
Q 002431 251 ---QADMAILYYKQA-IGCDPRFLEAYNNLGNALKD 282 (922)
Q Consensus 251 ---~~~~A~~~~~~~-l~~~p~~~~~~~~l~~~~~~ 282 (922)
.+++|+++|+++ ++.+|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 246777777777 67777777777766666543
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=5e-25 Score=239.02 Aligned_cols=251 Identities=10% Similarity=0.095 Sum_probs=126.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM-PQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
+|++..++..++.++...|++++|+..++++++++|++..+|+.+|.++...|+ +++|+..|+++++.+|+ ..+|..+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 444445555555555555555555555555555555555555555555555553 55555555555555444 4444555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH-cCChh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME-WNMLP 321 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~ 321 (922)
+.++...|++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++.. .|..+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555 33334
Q ss_pred HH-----HHHHHHHHhcCCCCchhhhhHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC--------
Q 002431 322 AA-----ASYYKATLAVTTGLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-------- 386 (922)
Q Consensus 322 ~A-----~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-------- 386 (922)
+| +..|++++.++|++..+|+.++.++...| ++++|++.++++ +.+|+++.++..+|.+|.++|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 44 24444444444444444444444444444 344444444444 444444444455555444442
Q ss_pred -CHHHHHHHHHHH-HhhCCCcHHHHHHHHHHH
Q 002431 387 -RVTDAIQDYIRA-ITIRPTMAEAHANLASAY 416 (922)
Q Consensus 387 -~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~ 416 (922)
.+++|+++|+++ ++++|.....|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 124444444444 444444444444444433
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=6.1e-24 Score=238.46 Aligned_cols=350 Identities=15% Similarity=0.107 Sum_probs=217.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI---DLAIRYYLVAIELRPNFADAWSNLASAYMRK 114 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 114 (922)
.+|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|+. ++|+.+|+++++. ++.+++.+|.++...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 3455555555555555555555443 2344455555555555555 5555555555543 344555555544433
Q ss_pred C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 115 G-----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 115 g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
+ ++++|+..|+++.+.+ ++.+++.+|.+|...+..+++. ++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~-------------------------------~a~ 129 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNV-------------------------------NAQ 129 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTC-------------------------------CHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCH-------------------------------HHH
Confidence 3 4445555555554432 2224444444444433322221 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH----HHHHHHhhCCChhHHHhHHHHHHHcC---ChHHHHHHHHHH
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIM----CYQRAVQTRPNAIAFGNLASTYYERG---QADMAILYYKQA 262 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 262 (922)
+.+.++.. +.++.+.+.+|.+|...+.++++.. +++.+...+| .+++.++.+|...| ++++|+..|+++
T Consensus 130 ~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 130 QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 33333322 2335566667777766664443333 3333333333 37777777777777 778888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCChHHHHhHHHH-H--HHcCChhHHHHHHHHHHhcCC
Q 002431 263 IGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYNQCLSLQPSHPQALTNLGNI-Y--MEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 263 l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+.
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-- 280 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-- 280 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--
Confidence 888777777777888887655 68888888888876 7788888888887 4 4678888888888888754
Q ss_pred CCchhhhhHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcH
Q 002431 336 GLSAPFNNLAVIYKQQG-----NYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMA 406 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~ 406 (922)
.++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~ 354 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQN 354 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChH
Confidence 47788888888887 55 9999999999998 8899999999988887 44999999999999875 456
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCH
Q 002431 407 EAHANLASAYKD----SGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 407 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.++||.+|.. ..++++|..+|+++.+.++...
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 788999999986 4589999999999998775433
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=1.4e-21 Score=229.94 Aligned_cols=402 Identities=13% Similarity=0.124 Sum_probs=307.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
.++.+...|.+.+|++++++++.... ++...-..++.+..+. +..+..++..+.-..+ ...+|.++...|
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNE 1063 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCC
Confidence 46778899999999999999984322 2333333344444443 3333333333322111 234889999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
.+++|..+|+++- .+..+ +...+...|++++|.++++++ +.+.+|..+|..+...|++++|+..|.++
T Consensus 1064 lyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 9999999999973 21222 222344788999999998866 56889999999999999999999999775
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHh
Q 002431 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241 (922)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 241 (922)
+++..|..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ..++...+..
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGPNNAHIQQ 1200 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCCCHHHHHH
Confidence 77888999999999999999999999999887744 3344468899999988885 44332 3455667778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChh
Q 002431 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (922)
Q Consensus 242 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (922)
+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++...|++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999986 47889999999999999999999988 55789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE--IGRVTDAIQDYIRAI 399 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al 399 (922)
.|..+... +.. ++..+..++..|...|.+++|+.++++++.+++.+...+..+|.++.+ -++..++++.|...+
T Consensus 1268 LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1268 LAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99988764 322 344566888999999999999999999999999888888888887776 467888899999888
Q ss_pred hhCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHhhccc
Q 002431 400 TIRP-----TMAEAHANLASAYKDSGHVEAAIKSYKQALLL------------RPDFPEATCNLLHTLQCV 453 (922)
Q Consensus 400 ~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~ 453 (922)
.+.| ++...|..+..+|.+-|+++.|....-+.... .+.+++.++..+..+...
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 8776 67888999999999999999998433322222 567788887777766643
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=6.2e-23 Score=215.53 Aligned_cols=261 Identities=12% Similarity=-0.001 Sum_probs=207.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHH
Q 002431 177 GLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255 (922)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 255 (922)
...+..|++.+|+..+++....+|++ .+....++++|...|++++|+..++.. ..|...++..++..+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 34556777777777777766655554 346666777888888888877766542 222366777778888888888888
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002431 256 ILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (922)
Q Consensus 256 ~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 333 (922)
++.+++++.. +|++..+++.+|.++...|++++|++.+++ |.+..++..++.++.+.|++++|...|+++++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 8888887754 588888888888888888888888888877 778888888888888888888888888888888
Q ss_pred CCCCchhhhhHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 334 TTGLSAPFNNLA--VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 334 ~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
+|++.......+ .++...|++++|+..|+++++.+|+++.+++.+|.++.++|++++|+..|+++++.+|+++.++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 877653333222 334455899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 002431 412 LASAYKDSGHVEA-AIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 412 la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 444 (922)
+|.++...|+.++ +.++++++++++|+++.+..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999876 57889999999999987653
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=1.2e-23 Score=236.09 Aligned_cols=377 Identities=15% Similarity=0.081 Sum_probs=223.6
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPRFAECYGNMANAWKE 79 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 79 (922)
..+|..+++.|++++|++.|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 46899999999999999999999876 4678899999999999998 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 80 KG-----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA---AQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 80 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
.+ ++++|+.+|+++++.. ++.+++.+|.+|...+..+++ .+.+.++.. +.++.+.+.+|.++...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 66 8899999999999854 455899999999987765544 344444333 23466777788888777755
Q ss_pred HHHHHH----HHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChH
Q 002431 152 QEAYSC----YLEALRIQPTFAIAWSNLAGLFMESG---DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL----GMPQ 220 (922)
Q Consensus 152 ~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~ 220 (922)
+++... ++.+...+ +.+++.++.+|...| ++++|+..|+++.+..+.....++.+|.+|... ++++
T Consensus 158 ~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred ccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 444433 33322222 225666666666666 666666666666666655555555566555433 3444
Q ss_pred HHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 002431 221 EAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA-L--KDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 221 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~al 297 (922)
+|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.
T Consensus 235 ~A~~~~~~aa------------------------------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 235 TAQALLEKIA------------------------------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHHG------------------------------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc------------------------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5555554444 4444455555554 2 23455555555555555
Q ss_pred hhCCCChHHHHhHHHHHHHcC-----ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccC
Q 002431 298 SLQPSHPQALTNLGNIYMEWN-----MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRID 368 (922)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 368 (922)
+.+ ++.+++.+|.+|. .| ++++|..+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+.
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~- 351 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN- 351 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence 332 4555555555555 33 5555666665555 5555566666655554 33677777777777653
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC
Q 002431 369 PLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p 437 (922)
.++.+.+.+|.+|.. ..++.+|..+|+++.+..+ ..+...+..+...+ ++..+|....++..+..+
T Consensus 352 -g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 352 -GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp -TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 445667777777764 3577777777777777654 34455555554443 366777777777766543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=1e-22 Score=213.91 Aligned_cols=259 Identities=13% Similarity=0.034 Sum_probs=185.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
-.+.++..|+|.+|+..++++...+|++ .+....++.+|...|++++|+..++. .+|.+..++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3566778888888888888777766665 45667778888888888888877654 2455666777777788888888
Q ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 84 DLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (922)
Q Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (922)
++|++.+++++.. +|+++.++..+|.++...|++++|++.+++ |.+..++..++.++...|++++|+..|+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887765 577888888888888888888888887776 677778888888888888888888888888
Q ss_pred HhhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002431 162 LRIQPTFAIAWSNLA--GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238 (922)
Q Consensus 162 l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 238 (922)
++.+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++...|++++|...|+++++.+|+ ..+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777653332222 33334467777777777777777777777777777777777777777777777776665 666
Q ss_pred HHhHHHHHHHcCChHH-HHHHHHHHHhcCCCcHH
Q 002431 239 FGNLASTYYERGQADM-AILYYKQAIGCDPRFLE 271 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~ 271 (922)
+.+++.++...|+.++ +..+++++++.+|+++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 6666666666666654 34566666666666663
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=3e-23 Score=216.84 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHH
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PR-FLEAYNNLGNAL 280 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~ 280 (922)
.++.+|.++...|++++|+..|+++++..|+ ..++..++.++...|++++|+..+++++... +. ...++..+|.++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544 3455555555555555555555555555411 11 134577777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISC 360 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 360 (922)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|......+++++|+..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777877787777777777778888888888888888888888888888888888888888444445589999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhC---CC-----cHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 361 YNEVLRIDPLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIR---PT-----MAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+++|
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888899999999998888 888999999988875 44 2368888999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHhhcc
Q 002431 430 KQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 430 ~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
+++++++|+++.++..+......
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHhcCccHHHHHHHhhhhhcc
Confidence 99999999999888776554443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=3.2e-23 Score=208.04 Aligned_cols=200 Identities=24% Similarity=0.273 Sum_probs=160.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 110 AYMRK-----------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 110 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
++... |++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 88888 888888888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
+...|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888887653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.1e-23 Score=211.93 Aligned_cols=237 Identities=20% Similarity=0.254 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc-------HHHHHHH
Q 002431 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-------LEAYNNL 276 (922)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l 276 (922)
..+..+|.++...|++++|+..|+++++...+..++..++.++...|++++|+..++++++..|+. ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 344444555555555555555555554444224445555555555555555555555555444433 4667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHH
Q 002431 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD 356 (922)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 356 (922)
|.++...|++++|+..++++++..|. +.++...|++++|...+++++...|.+..++..+|.++...|++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 77777777777777777777777665 4556666777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ------CCCHHHHHHHHH
Q 002431 437 ------PDFPEATCNLLH 448 (922)
Q Consensus 437 ------p~~~~~~~~l~~ 448 (922)
|++..++..+..
T Consensus 238 ~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHTTTTHHHHHHHHHH
T ss_pred hhhcCCCchHHHHHHHHH
Confidence 777666655543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=4.8e-23 Score=206.73 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=104.6
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hc-----------CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 002431 316 EW-----------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (922)
Q Consensus 316 ~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (922)
.. |++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++ +++.++..+|.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 55 555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
.|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++
T Consensus 164 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=6e-23 Score=214.58 Aligned_cols=244 Identities=17% Similarity=0.136 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNLAS 109 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 109 (922)
+.++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 44555566666666666666666666666666555666666666666666666666666655 2221 334566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++......+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666663333334666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CC------hhHHHhHHHHHHHcCChHHHHH
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGM---PQEAIMCYQRAVQTR---PN------AIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~------~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
..++++++..|++..++..++.++...|+ +++|+..++++++.. |+ ..++..+|.++...|++++|+.
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666665 555666666665542 21 1334444444444555555555
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 002431 258 YYKQAIGCDPRFLEAYNNLGN 278 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~ 278 (922)
.++++++.+|++..++-.++.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHhcCccHHHHHHHhhh
Confidence 555555555554444444433
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-22 Score=208.78 Aligned_cols=225 Identities=20% Similarity=0.215 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+..+..+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|++ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4556666666666666666666666666666 566666666666666666666666666666655543 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
.+|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|.+..++..+|.++...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666666666554 23444455555666666665555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh
Q 002431 186 NRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIG 264 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 264 (922)
++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|+ ..++..++.++...|++++|+..++++++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555444 44444444444444555555444444444
Q ss_pred cC
Q 002431 265 CD 266 (922)
Q Consensus 265 ~~ 266 (922)
.+
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 44
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=4.5e-20 Score=217.32 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=311.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+++-.-.....|...|.+.+|++.|++++-... ++......++.+..+. +..+..++..+.-..+ ...+|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence 344455677788899999999999999984332 2344444455555554 3344444444332211 23479
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
.++...|.+++|..+|+++- .... .+...+...+++++|.+.++++ +.+.+|+.+|.++...|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999972 1112 2233344888999999998865 5689999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002431 189 LQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (922)
+..|.++ +++..+..++.++.+.|++++|+++|..+.+..+++.....++.+|.+.+++++ ++.|- ..++
T Consensus 1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI----~~~n 1194 (1630)
T 1xi4_A 1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFI----NGPN 1194 (1630)
T ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHH----hCCC
Confidence 9999875 788999999999999999999999999999888776566679999999999885 44332 2333
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 002431 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (922)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 348 (922)
...+..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++
T Consensus 1195 -~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1195 -NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHH
Confidence 456778999999999999999999995 58899999999999999999999998 5568999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CCHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAI 426 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~ 426 (922)
...|++..|..+... +. .+++.+..++..|...|.+++|+..+++++.+++.+...+..++.+|.+- ++..+++
T Consensus 1261 ve~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998875 33 44666778999999999999999999999999999999999999988875 5889999
Q ss_pred HHHHHHHhcCC-----CCHHHHHHHHHhhcccCChhhHhHH
Q 002431 427 KSYKQALLLRP-----DFPEATCNLLHTLQCVCSWEDRDRM 462 (922)
Q Consensus 427 ~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~a~~~ 462 (922)
+.|.+.+.+.| +....|..+...|...++|+.|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999988877 7888899999999999998887643
No 44
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.89 E-value=1.9e-23 Score=231.53 Aligned_cols=346 Identities=13% Similarity=0.097 Sum_probs=235.3
Q ss_pred ccceeeeecCCCC--CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC-------HHHHH
Q 002431 535 RRLRVGYVSSDFG--NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-------SDMIA 605 (922)
Q Consensus 535 ~~~rig~~s~~~~--~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 605 (922)
+++||.+++..+. .+++..++..+.+.+ .+++|.+++....... ....-......++.+.... ...+.
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEE-AHAYDKTLDYEVIRWPRSVMLPTPTTAHAMA 79 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHH-HHHHHTTCSSEEEEESSSSCCSCHHHHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccc-hhhhccccceEEEEccccccccchhhHHHHH
Confidence 4689999998876 456778999999999 3678888876543211 1222223333444444321 36789
Q ss_pred HHHHhCCCeEEEcCCCcCCCCchhhhhcCCCc-eEEeccccCCCCCCC-ccc------EEEecCccCCcCccCC------
Q 002431 606 KLINEDKIQILINLNGYTKGARNEIFAMQPAP-IQVSYMGFPGTTGAS-YID------YLVTDEFVSPLRYAHI------ 671 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap-vq~~~~g~~~t~g~~-~~d------~~~~d~~~~~~~~~~~------ 671 (922)
+.|++.++||++-......+.-..++.....| +..++.|+....... ... +..+|.+++++.....
T Consensus 80 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 159 (394)
T 3okp_A 80 EIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAF 159 (394)
T ss_dssp HHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhc
Confidence 99999999999532211111111122223455 555655542211110 000 1134555555543111
Q ss_pred -CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEe
Q 002431 672 -YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLL 748 (922)
Q Consensus 672 -~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~ 748 (922)
..+++..+|+..-...... ..+......|+.+|++++.++++.++++ .|+.+.++++|.++.+..|+.+|+|+
T Consensus 160 ~~~~~~~vi~ngv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 235 (394)
T 3okp_A 160 GSHPTFEHLPSGVDVKRFTP----ATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIV 235 (394)
T ss_dssp CSSSEEEECCCCBCTTTSCC----CCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCCCeEEecCCcCHHHcCC----CCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 1345555664332111100 0000112378889999988888888886 59999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCC-------CC-hhHHHHHHHcCCCeeeecC
Q 002431 749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-------NA-HTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~-------~g-~~t~~eal~~g~Pvv~~~~ 820 (922)
|+|+. .+.+++.+ .|+ .++|+|.|.++.++...+|+.+|++|.|+.+ +| |++++|||++|+|||+.+.
T Consensus 236 G~g~~-~~~l~~~~--~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~ 311 (394)
T 3okp_A 236 GSGRY-ESTLRRLA--TDV-SQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTS 311 (394)
T ss_dssp CCCTT-HHHHHHHT--GGG-GGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSS
T ss_pred cCchH-HHHHHHHH--hcc-cCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCC
Confidence 99876 77888777 677 4899999999999999999999999999988 88 9999999999999998766
Q ss_pred CcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 821 EKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 821 ~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.....-+.. | .+ +++. |++++++++.+++.|++.+.+++++.++... ..|+++.++++++++|+++.+
T Consensus 312 ~~~~e~i~~------~-~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 312 GGAPETVTP------A-TG-LVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVE--AEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp TTGGGGCCT------T-TE-EECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHTBHHHHHHHHHHHHHSCCC
T ss_pred CChHHHHhc------C-Cc-eEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhcc
Confidence 555544432 4 45 5544 9999999999999999999999999988763 359999999999999987654
Q ss_pred HHh
Q 002431 899 LHC 901 (922)
Q Consensus 899 ~~~ 901 (922)
...
T Consensus 382 ~~~ 384 (394)
T 3okp_A 382 KLA 384 (394)
T ss_dssp ---
T ss_pred Ccc
Confidence 433
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=225.79 Aligned_cols=297 Identities=23% Similarity=0.254 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV----DAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFA 169 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 169 (922)
...++..+|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 455666777777777777777777777777776663 45666777777777777777777766654 22334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC-------------hHHHHHHHHHHH
Q 002431 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGM-------------PQEAIMCYQRAV 230 (922)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~ 230 (922)
.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----- 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----- 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----
Confidence 455555556666666666666655555543321 1244444444444444 0000000
Q ss_pred hhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002431 231 QTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304 (922)
Q Consensus 231 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (922)
+++|+..+++++.. .+....++..+|.++...|++++|+..++++++..+...
T Consensus 163 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 163 ---------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 44444444443322 122234555666666666666666666666665543322
Q ss_pred H------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 002431 305 Q------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA- 371 (922)
Q Consensus 305 ~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 371 (922)
. ++..+|.++...|++++|..++++++...+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 55555555555555555555555555544332 3445556666666666666666666665553222
Q ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHhcCCH
Q 002431 372 -----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAYKDSGHV 422 (922)
Q Consensus 372 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 422 (922)
..++..+|.++...|++++|+..+++++++. +....++..++.++...|+.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4455666666666666666666666666552 22244555566666655544
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=223.64 Aligned_cols=269 Identities=26% Similarity=0.322 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCc
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNF 100 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 100 (922)
.....+..+|.++...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+|+++++. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 345566777777888888888888888887777776 356777777777888888888877777665 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGL--------------------VQEA 154 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 154 (922)
..++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5677777777777777777777777777664322 3366677777777777 6677
Q ss_pred HHHHHHHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHH
Q 002431 155 YSCYLEALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 155 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A 222 (922)
+..++++++. .+....++..+|.++...|++++|+..++++++..+.... ++..+|.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7666666654 2223445666666666666666666666666655433222 555666666666666666
Q ss_pred HHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHH
Q 002431 223 IMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF------LEAYNNLGNALKDVGRVDEA 289 (922)
Q Consensus 223 ~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A 289 (922)
+..++++++..+. ..++..++.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665543221 3344455555555555555555555555332211 33445555555555555555
Q ss_pred HHHHHHHHhh
Q 002431 290 IQCYNQCLSL 299 (922)
Q Consensus 290 ~~~~~~al~~ 299 (922)
+.+++++++.
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 47
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.89 E-value=2.3e-22 Score=224.27 Aligned_cols=342 Identities=12% Similarity=0.100 Sum_probs=227.0
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCCh-HHHHHHHhccCc--eEECCCCC-------HHHH
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT-EWRQRTQSEAEH--FVDVSAMS-------SDMI 604 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-------~~~~ 604 (922)
+++||.++++.+..+++..++..+.+.+.+.++||.+++....... .....+...... .+.+.... ...+
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNREN 118 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHHHH
Confidence 4689999999887778888888899988888899988776543211 011112211111 11121100 0124
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchh---hhhcCCCceEEeccccCCCCC----------CCcccEEEecCccCCcCc-cC
Q 002431 605 AKLINEDKIQILINLNGYTKGARNE---IFAMQPAPIQVSYMGFPGTTG----------ASYIDYLVTDEFVSPLRY-AH 670 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~---~~~~~~apvq~~~~g~~~t~g----------~~~~d~~~~d~~~~~~~~-~~ 670 (922)
.+.++..++||+ |+|+.... .+..+..|+.++..+...... +...|.+ +++.++. ..
T Consensus 119 ~~~l~~~~~Dvv-----~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~----i~~~s~~~~~ 189 (416)
T 2x6q_A 119 SKFIDLSSFDYV-----LVHDPQPAALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRY----IFHLPEYVQP 189 (416)
T ss_dssp HHSSCGGGSSEE-----EEESSTTGGGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEE----EESSGGGSCT
T ss_pred HHHHhhcCCCEE-----EEeccchhhHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEE----EEechHHHHh
Confidence 555667799999 44443221 112223688776544322111 0112222 2223222 22
Q ss_pred CCc-cceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEE
Q 002431 671 IYS-EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 747 (922)
Q Consensus 671 ~~~-e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 747 (922)
.+. +++..+|++.-...... .+..+......|+++|++++.+++++++|+ .|+.+.++++|.++.+..|+.+|+|
T Consensus 190 ~~~~~~~~vi~ngvd~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 267 (416)
T 2x6q_A 190 ELDRNKAVIMPPSIDPLSEKN--VELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLL 267 (416)
T ss_dssp TSCTTTEEECCCCBCTTSTTT--SCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hCCccceEEeCCCCChhhhcc--cccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 222 45555665432111100 000000011267789999888888888876 5999999999999999999999999
Q ss_pred ecCChh----hHHHHHHHHHHcCCCCCceEEcCCCC---cHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeec
Q 002431 748 LRFPAA----GEMRLRAYAVAQGVQPDQIIFTDVAM---KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 748 ~~~~~~----~~~~l~~~~~~~g~~~~rv~f~~~~~---~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
+|+|+. ..+.+++.+++.|+ .++|.|+|+++ ..+...+|+.+|++|.|+.++| |++++|||++|+|||+.+
T Consensus 268 ~G~g~~~~~~~~~~l~~~~~~~~~-~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~ 346 (416)
T 2x6q_A 268 VGVMAHDDPEGWIYFEKTLRKIGE-DYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRA 346 (416)
T ss_dssp EECCCTTCHHHHHHHHHHHHHHTT-CTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEES
T ss_pred EecCcccchhHHHHHHHHHHHhCC-CCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEcc
Confidence 999853 25678888999999 58999999654 5688889999999999999999 999999999999999655
Q ss_pred CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
......- + .-|-.+ +++.|++++++++.++.+|++.+++++++.++... ..|+++.++++++++|+++.
T Consensus 347 ~~g~~e~-----i-~~~~~g-~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 347 VGGIKFQ-----I-VDGETG-FLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVR--KNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp CHHHHHH-----C-CBTTTE-EEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHTBHHHHHHHHHHHHHTC-
T ss_pred CCCChhh-----e-ecCCCe-EEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHhh
Confidence 3221111 1 114556 66679999999999999999999999999988763 24999999999999998653
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2e-21 Score=199.00 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=184.4
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
..|++++|...++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 002431 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
+++++..|++..++..++.+|...|++++|...|+++++.+|+++.++..+......
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999988877655443
No 49
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.88 E-value=3.1e-23 Score=233.18 Aligned_cols=344 Identities=15% Similarity=0.106 Sum_probs=228.0
Q ss_pred CCcccceeeeecCCCCC---------ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC----
Q 002431 532 GGLRRLRVGYVSSDFGN---------HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA---- 598 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~---------h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 598 (922)
...+.+||.+++..+.. +++..++..+.+.+.+.++||.+++............+.. ...++.++.
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-~v~v~~~~~~~~~ 94 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAE-NLRVINIAAGPYE 94 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEET-TEEEEEECCSCSS
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccC-CeEEEEecCCCcc
Confidence 45677899999987643 4566788889898888889999988654321100000000 111222211
Q ss_pred -CC-------H----HHHHHH-HHhC-CCeEEEcCCCcCCCCchhhhh-----cCCCceEEeccccCCCC--CCCc----
Q 002431 599 -MS-------S----DMIAKL-INED-KIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGFPGTT--GASY---- 653 (922)
Q Consensus 599 -~~-------~----~~~~~~-i~~~-~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~~~t~--g~~~---- 653 (922)
.. . ..+.+. ++.. ++||+ |++.....+++ ....|+.++..+..... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div-----~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~ 169 (438)
T 3c48_A 95 GLSKEELPTQLAAFTGGMLSFTRREKVTYDLI-----HSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTP 169 (438)
T ss_dssp SCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEE-----EEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHSCC----CCH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCCEE-----EeCCccHHHHHHHHHHHcCCCEEEEecCCcccccccccccCCc
Confidence 00 0 123333 5544 59999 55543222222 13468887765442100 0000
Q ss_pred ---c-------cEEEecCccCCcCccCC--------CccceeecCCccccCCCccccccCCCCCCCC---CcCCCCCCCC
Q 002431 654 ---I-------DYLVTDEFVSPLRYAHI--------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQP---KRSDYGLPED 712 (922)
Q Consensus 654 ---~-------d~~~~d~~~~~~~~~~~--------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~---~r~~~~l~~~ 712 (922)
. -+..+|.+++++..... ..+++..+|+..-... . .+..... .|.++|++++
T Consensus 170 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~------~-~~~~~~~~~~~r~~~~~~~~ 242 (438)
T 3c48_A 170 ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVEL------Y-SPGNDRATERSRRELGIPLH 242 (438)
T ss_dssp HHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTT------S-CCC----CHHHHHHTTCCSS
T ss_pred chHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccc------c-CCcccchhhhhHHhcCCCCC
Confidence 0 01124666666553211 1234555554332111 1 1111112 6888999888
Q ss_pred cEEEEecCCC--CCCCHHHHHHHHHHHhhCC--CeEEEEecC----ChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 713 KFIFACFNQL--YKMDPEIFNTWCNILRRVP--NSALWLLRF----PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 713 ~~~~~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~~~~~----~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
.+++++++++ .|+.+.++++|.++.++.| +.+|+|+|. |+. .+.+++.++++|+ .++|.|+|.++..+..
T Consensus 243 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~-~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~ 320 (438)
T 3c48_A 243 TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNAT-PDTYRHMAEELGV-EKRIRFLDPRPPSELV 320 (438)
T ss_dssp SEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC-------CHHHHHHHHTTC-TTTEEEECCCCHHHHH
T ss_pred CcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcH-HHHHHHHHHHcCC-CCcEEEcCCCChHHHH
Confidence 8899988876 4999999999999999988 799999998 554 6789999999999 5899999999999999
Q ss_pred HhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~ 861 (922)
.+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+. -|..+ +++ .|++++++++.++.+|++
T Consensus 321 ~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~ 393 (438)
T 3c48_A 321 AVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVA------EGETG-LLVDGHSPHAWADALATLLDDDE 393 (438)
T ss_dssp HHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSC------BTTTE-EEESSCCHHHHHHHHHHHHHCHH
T ss_pred HHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhh------CCCcE-EECCCCCHHHHHHHHHHHHcCHH
Confidence 99999999999998888 999999999999999766543333221 13344 444 489999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLH 900 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~ 900 (922)
.+.+++++.++... . |+++.++++++++|+++.++.
T Consensus 394 ~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 394 TRIRMGEDAVEHAR--T-FSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp HHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH--h-CCHHHHHHHHHHHHHHHhhhc
Confidence 99999999998774 3 999999999999999998754
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.7e-21 Score=198.09 Aligned_cols=210 Identities=20% Similarity=0.198 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhH
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (922)
+++++..|++..++..++.++...|++++|+..++++++..|+ ..++..+
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 5555555555555555555555555555555555555555554 3333333
No 51
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.88 E-value=1.7e-23 Score=239.10 Aligned_cols=345 Identities=10% Similarity=0.027 Sum_probs=233.3
Q ss_pred ccceeeeecCCCC-------------CChhHhhhhHHhhcCCCCCeEEEEEecCCCCCh--HHHHHHHh----ccCceEE
Q 002431 535 RRLRVGYVSSDFG-------------NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT--EWRQRTQS----EAEHFVD 595 (922)
Q Consensus 535 ~~~rig~~s~~~~-------------~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~----~~~~~~~ 595 (922)
++|||.+++..+. .++++.++..+.+.+.+.+++|++++....... .+...+.. ....++.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 85 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVR 85 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEE
Confidence 4589999998652 355668999999999888899999886543211 11000111 1122232
Q ss_pred CCCC-----------C-----HHHHHHHHHh--CCCeEEEcCCCcCCCCchhhhhc-----CCCceEEeccccCC-----
Q 002431 596 VSAM-----------S-----SDMIAKLINE--DKIQILINLNGYTKGARNEIFAM-----QPAPIQVSYMGFPG----- 647 (922)
Q Consensus 596 ~~~~-----------~-----~~~~~~~i~~--~~~dil~~~~~~~~~~~~~~~~~-----~~apvq~~~~g~~~----- 647 (922)
++.. . ...+.+.|++ .++||+ |+|+....+++. ...|+.++..+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Div-----h~~~~~~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~ 160 (499)
T 2r60_A 86 IPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVV-----TTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEK 160 (499)
T ss_dssp ECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEE-----EEEHHHHHHHHHHHHHHHCCCEEEECSSCHHHHHHT
T ss_pred ecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEE-----EEcCCcchHHHHHHHHhcCCcEEEEccCcccccchh
Confidence 2210 0 1357777887 589999 666544333221 24688887655311
Q ss_pred --CCCCC-----------------cccEEEecCccCCcCcc-----CC----------CccceeecCCccccCCCccccc
Q 002431 648 --TTGAS-----------------YIDYLVTDEFVSPLRYA-----HI----------YSEKLVHVPHCYFVNDYKQKNM 693 (922)
Q Consensus 648 --t~g~~-----------------~~d~~~~d~~~~~~~~~-----~~----------~~e~~~~lp~~~~~~~~~~~~~ 693 (922)
..+.. ..-+..+|.+++++... .. ..+++..+|++.-..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~------- 233 (499)
T 2r60_A 161 LNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTR------- 233 (499)
T ss_dssp TCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTT-------
T ss_pred hccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChh-------
Confidence 01110 00011346666655431 11 124555565433211
Q ss_pred cCCCCCC-----CCCcCCCC-----CCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCe-EEEEecCChhh------
Q 002431 694 DVLDPNC-----QPKRSDYG-----LPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAG------ 754 (922)
Q Consensus 694 ~~~~~~~-----~~~r~~~~-----l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~------ 754 (922)
...+.. ...|+++| ++++.+++++++|+ .|+++.++++|.++.+..|+. +|+|+|.++..
T Consensus 234 -~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~ 312 (499)
T 2r60_A 234 -VFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSR 312 (499)
T ss_dssp -TSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTT
T ss_pred -hcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCccccccc
Confidence 111111 23567777 77788889999876 599999999999988776765 78888872221
Q ss_pred --------HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC----cEEecCCCCCC-hhHHHHHHHcCCCeeeecCC
Q 002431 755 --------EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 821 (922)
Q Consensus 755 --------~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~----dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~ 821 (922)
.+.+++.++++|+ .++|+|+|.++..+...+|+.+ ||+|.|+.++| |++++|||++|+|||+....
T Consensus 313 l~~~~~~y~~~l~~~~~~~~l-~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~ 391 (499)
T 2r60_A 313 AGQEEKEILGKIIELIDNNDC-RGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG 391 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC-BTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB
T ss_pred ccccchHHHHHHHHHHHhcCC-CceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC
Confidence 6789999999999 5899999999999999999999 99999999999 99999999999999976644
Q ss_pred cchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 822 KMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 822 ~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
....-+. . |..+ +++ .|++++++++.++..|++.+.+++++.++... ..|+++.++++++++|+++..+
T Consensus 392 g~~e~v~-----~-~~~g-~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 392 GPAEILD-----G-GKYG-VLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVE--ERYTWQETARGYLEVIQEIADR 462 (499)
T ss_dssp HHHHHTG-----G-GTSS-EEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--HHSBHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHhc-----C-CceE-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhh
Confidence 3333222 1 4344 443 58999999999999999999999999988763 3599999999999999999885
Q ss_pred Hhc
Q 002431 900 HCS 902 (922)
Q Consensus 900 ~~~ 902 (922)
...
T Consensus 463 ~~~ 465 (499)
T 2r60_A 463 KDE 465 (499)
T ss_dssp ---
T ss_pred hhh
Confidence 543
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=1.4e-21 Score=217.85 Aligned_cols=276 Identities=25% Similarity=0.299 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHH
Q 002431 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA----IAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDA 205 (922)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~ 205 (922)
..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..++++++. .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445555566666666666666666666555544 34555555555555555555555555544 2223334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
+..+|.++...|++++|+..++++++..+. ....+....++..+|.++...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------------------LGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------HTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------------------hhchHHHHHHHHHHHHHHHHcCc
Confidence 455555555555555555555554443110 00023334455566666666666
Q ss_pred -----------------HHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCch---
Q 002431 286 -----------------VDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA--- 339 (922)
Q Consensus 286 -----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--- 339 (922)
+++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..+....
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 666666666655542 122346667777777777777777777777766554333
Q ss_pred ---hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------
Q 002431 340 ---PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------ 404 (922)
Q Consensus 340 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 404 (922)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 67788888888888888888888888776533 568888999999999999999999999887433
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
...++..+|.+|...|++++|..+|++++++.+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2558899999999999999999999999988654
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=2.2e-21 Score=216.18 Aligned_cols=273 Identities=27% Similarity=0.321 Sum_probs=229.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA----ECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPN 99 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 99 (922)
+.....++.+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 44567778889999999999999999999999888875 57888999999999999999999998877 455
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLGNLMKAQGL-----------------VQEAYS 156 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 156 (922)
...++..+|.++...|++++|+..++++++. .+....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6778889999999999999999999998877 45556688889999999999 999999
Q ss_pred HHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChHHHHH
Q 002431 157 CYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------AYLNLGNVYKALGMPQEAIM 224 (922)
Q Consensus 157 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~ 224 (922)
.++++++.. +....++..++.++...|++++|+..++++++..+.... ++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 998888753 334568888999999999999999999999887654333 78899999999999999999
Q ss_pred HHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHH
Q 002431 225 CYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDVGRVDEAIQ 291 (922)
Q Consensus 225 ~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~ 291 (922)
.+++++...+. ..++..++.++...|++++|+.++++++...+. ...++..+|.++...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99998876442 567889999999999999999999999865332 24588899999999999999999
Q ss_pred HHHHHHhhCCC
Q 002431 292 CYNQCLSLQPS 302 (922)
Q Consensus 292 ~~~~al~~~p~ 302 (922)
++++++++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=2.1e-21 Score=203.13 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=146.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 7 HQMYKSGSYKQALEHSNSVYERN----PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
..+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 33445577777777777777652 34566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
+++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++.......+.. ...|++++|+..+++++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766554444333 44566666666666666
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
...|.+...+. ++..+...++.++|+..+++++...|.. ..++..+|.++...|++++|+..|+++++.+|
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 66665544433 4555555566666666666665544321 34444555555555555555555555554444
No 55
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.87 E-value=8.7e-22 Score=219.42 Aligned_cols=339 Identities=11% Similarity=0.081 Sum_probs=224.8
Q ss_pred ceeeeecCCCCC-ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChH---H---HHHHHhccCceEECCCCCHHHHHHHHH
Q 002431 537 LRVGYVSSDFGN-HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTE---W---RQRTQSEAEHFVDVSAMSSDMIAKLIN 609 (922)
Q Consensus 537 ~rig~~s~~~~~-h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (922)
|||.++++.+.. ++++.++..+.+.+.+. +||.+++........ . ......... +..-..+....+.+.|+
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 78 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVR-GLNEQGFYYSGLSEFID 78 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHT-TCCSTTCCHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCcccccccc-ccccccchHHHHHHHHH
Confidence 689999876643 56778899999999888 999988764321000 0 001111111 11111345677899999
Q ss_pred hCCCeEEEcCCCcCCCCchhhhh-----cCCCc----eEEeccccCCCCCCCcccEE--Eec--CccCCcCccC-----C
Q 002431 610 EDKIQILINLNGYTKGARNEIFA-----MQPAP----IQVSYMGFPGTTGASYIDYL--VTD--EFVSPLRYAH-----I 671 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~-----~~~ap----vq~~~~g~~~t~g~~~~d~~--~~d--~~~~~~~~~~-----~ 671 (922)
..++||+ |++.. .++++ .+..| +...+..... .....+.++ .+| .+++++.... .
T Consensus 79 ~~~~Div-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~ 151 (413)
T 3oy2_A 79 VHKPDIV-----MIYND-PIVIGNYLLAMGKCSHRTKIVLYVDLVSK-NIRENLWWIFSHPKVVGVMAMSKCWISDICNY 151 (413)
T ss_dssp HHCCSEE-----EEEEC-HHHHHHHHHHGGGCCSCCEEEEEECCCSB-SCCGGGGGGGGCTTEEEEEESSTHHHHHHHHT
T ss_pred hcCCCEE-----EEcch-HHHHHHHHHHhccCCCCCceeeeccccch-hhHHHHHHHHhccCCceEEEcCHHHHHHHHHc
Confidence 9999999 55522 12211 11122 2222211111 111111111 122 4444544321 1
Q ss_pred -CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEE
Q 002431 672 -YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (922)
Q Consensus 672 -~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~ 746 (922)
..+++..+|+..-. ... ...|.++|+++ +.++|++++|+ .|+.+.++++|.++.++.|+.+|+
T Consensus 152 ~~~~~~~vi~ngvd~--------~~~----~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ 219 (413)
T 3oy2_A 152 GCKVPINIVSHFVDT--------KTI----YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVR 219 (413)
T ss_dssp TCCSCEEECCCCCCC--------CCC----TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCCCceEEeCCCCCH--------HHH----HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEE
Confidence 12344444432211 001 34678889988 88999999987 599999999999999999999999
Q ss_pred EecCChhh-----HHHHHHHHHHcCCCCCc-------eEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC
Q 002431 747 LLRFPAAG-----EMRLRAYAVAQGVQPDQ-------IIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 813 (922)
Q Consensus 747 ~~~~~~~~-----~~~l~~~~~~~g~~~~r-------v~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~ 813 (922)
|+|+|+.. .+.+++.+++.|+ .++ |.|.|.++.++...+|+.+|++|.|+.++| |++++|||++|+
T Consensus 220 ivG~g~~~~~~~l~~~~~~~~~~~~l-~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~ 298 (413)
T 3oy2_A 220 FLCNSHHESKFDLHSIALRELVASGV-DNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGK 298 (413)
T ss_dssp EEEECCTTCSCCHHHHHHHHHHHHTC-SCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTC
T ss_pred EEeCCcccchhhHHHHHHHHHHHcCc-ccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCC
Confidence 99988642 3789999999999 477 888899999999999999999999999988 999999999999
Q ss_pred CeeeecCCcchhhhHHHHH------------HhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002431 814 PMITLPLEKMATRVAGSLC------------LATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~------------~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 880 (922)
|||+.+...+..-+....- ...|+.+ ++. .|++++++++ ++..|++.+.+++++.++.. ...|
T Consensus 299 PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~g-l~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~--~~~f 374 (413)
T 3oy2_A 299 PLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGG-IEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFV--KTKP 374 (413)
T ss_dssp CEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCC-EEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHH--TTSC
T ss_pred CEEEcCCCChHHHHccCcccccccccccccccccCcce-eeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH--HHhC
Confidence 9996543322222210000 0002222 332 5999999999 99999999999999999976 4469
Q ss_pred ChHHHHHHHHHHHHHHHHHHh
Q 002431 881 DTARWVKNLERSYFKMWSLHC 901 (922)
Q Consensus 881 ~~~~~~~~~e~~y~~~~~~~~ 901 (922)
+++.++++++++|+++.++..
T Consensus 375 s~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 375 TWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp CHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999987543
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=3.1e-21 Score=208.04 Aligned_cols=275 Identities=24% Similarity=0.315 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q 002431 137 AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF----AIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTFPDAY 206 (922)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~ 206 (922)
.+...|..+...|++++|+..|+++++..|.+ ..++..++.++...|++++|+..+++++.. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 44555666666666666666666666665555 244555566666666666666666655543 12223344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR 285 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 285 (922)
..+|.++...|++++|+..++++++..+. .. .+....++..+|.++...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------------KVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------------chHHHHHHHHHHHHHHHcCc
Confidence 55555555555555555555554443211 00 00012245555555555555
Q ss_pred --------------------HHHHHHHHHHHHhhC------CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc-
Q 002431 286 --------------------VDEAIQCYNQCLSLQ------PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS- 338 (922)
Q Consensus 286 --------------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~- 338 (922)
+++|+..++++++.. +....++..+|.++...|++++|...++++++..+...
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 555555555555431 11234566667777777777777777777666543322
Q ss_pred -----hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--
Q 002431 339 -----APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-- 405 (922)
Q Consensus 339 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 405 (922)
.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 267788888888888888888888888765443 5678888999999999999999999888775432
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 406 ----AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 406 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
..++..+|.+|...|++++|..+|++++++.++.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999887653
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=4.5e-20 Score=190.18 Aligned_cols=209 Identities=18% Similarity=0.095 Sum_probs=191.4
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 316 EWNMLPAAASYYKATLA--VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998 7788888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002431 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (922)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (922)
.++++++..|++..++..++.++...|++++|.++++++++.+|+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999887654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=1.3e-20 Score=183.92 Aligned_cols=173 Identities=23% Similarity=0.376 Sum_probs=152.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 268 RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
++..+|+.+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 348 YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 348 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+...+++++|...+.++++.+|.+..++..+|.++..+|++++|++.|+++++.+|+++.++..+|.+|.++|++++|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCH
Q 002431 428 SYKQALLLRPDFP 440 (922)
Q Consensus 428 ~~~~al~~~p~~~ 440 (922)
.|+++++++|+++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 9999999888753
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.87 E-value=3.3e-18 Score=197.42 Aligned_cols=427 Identities=12% Similarity=0.044 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD---IDLAIRYYL 91 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 91 (922)
..+-+..|++.+..+|.+...|..++......++++.+...|++++...|.....|...+....+.++ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999888898 999999999
Q ss_pred HHHhcCC--CcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------Hc
Q 002431 92 VAIELRP--NFADAWSNLASAYMRKGRL--------NEAAQCCRQALAL----NPLLVDAHSNLGNLMK---------AQ 148 (922)
Q Consensus 92 ~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~l~~----~p~~~~~~~~la~~~~---------~~ 148 (922)
+++...| .++..|..........++. +...+.|++++.. ++.....|........ .+
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999883 5678888887766665543 3344778887763 5667777777766544 34
Q ss_pred CCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhc-------CCCC-----
Q 002431 149 GLVQEAYSCYLEALRIQPTF-AIAWSNLAGLFME-------------SGDLNRALQYYKEAVKL-------KPTF----- 202 (922)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~-------~p~~----- 202 (922)
++.+.+..+|++++.....+ ...|......-.. ..+|..|...+.+.... .|..
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 45778899999999642222 2233222211111 12334444444432111 1110
Q ss_pred --------------HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHH-HHH
Q 002431 203 --------------PDAYLNLGNVYKALG-------MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAI-LYY 259 (922)
Q Consensus 203 --------------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~ 259 (922)
...|......-...+ ..+.....|++++...|. ...|...+..+...|+.++|. ..|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 123444433322222 123456778888888887 888888888888888888886 888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CC-----------ChHHHHhHHHHHHHc
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-----------PS-----------HPQALTNLGNIYMEW 317 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~ 317 (922)
++++...|.+...|..++......|++++|.++|++++... |. ...+|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888642 42 234677777777788
Q ss_pred CChhHHHHHHHHHHhc-CCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAV-TTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
|+.+.|..+|.++++. .+.....|...+.+..+.+ +.+.|.++|+.+++..|+++..+...+......|+.+.|..+|
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888877 4444566666666666654 4888888888888888888888888888888888888888888
Q ss_pred HHHHhhCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 396 IRAITIRP---TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 396 ~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
+++++..| ....+|......-.+.|+.+.+..+++++.+..|+++.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 88888877 35567777888888888888888888888888888654
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=4.7e-21 Score=206.68 Aligned_cols=267 Identities=26% Similarity=0.316 Sum_probs=139.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWS 105 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 105 (922)
++..|..+...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..++++++. .+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3444444444444444444444444444443 233444444444444444444444444433 122233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGL--------------------VQEAYSCYL 159 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 159 (922)
.+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 44444444444444444444444432211 2244445555555555 555555555
Q ss_pred HHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 002431 160 EALRI------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 160 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
+++.. .+....++..++.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44443 12223455555666666666666666666655543221 1255666666666666666666666
Q ss_pred HHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 228 RAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 228 ~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
++++..+. ..++..++.++...|++++|+..+++++...+. ...++..++.++...|++++|..+++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66554221 445666677777777777777777766644322 13466777778888888888888888
Q ss_pred HHHhhCCC
Q 002431 295 QCLSLQPS 302 (922)
Q Consensus 295 ~al~~~p~ 302 (922)
++++..+.
T Consensus 328 ~a~~~~~~ 335 (338)
T 3ro2_A 328 KHLEISRE 335 (338)
T ss_dssp HHHHC---
T ss_pred HHHHHHHh
Confidence 87776543
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1e-19 Score=183.69 Aligned_cols=211 Identities=18% Similarity=0.115 Sum_probs=191.3
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66778888888888888888888888888888888889999999999999999999999999999999999999999999
Q ss_pred Hc-CChhHHHHHHHHHHh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 002431 316 EW-NMLPAAASYYKATLA--VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (922)
Q Consensus 316 ~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (922)
.. |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 99 999999999999998 556667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 393 QDYIRAITIRP-TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 393 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
..++++++..| ++..++..++.++...|+.++|..+++.+.+.+|+++.+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999 9999999999999999999999999999999999998776443
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1.7e-19 Score=188.49 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE----RGQADMAILYYKQAIGCDPRFLEAYNN 275 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 275 (922)
|.++.+++.+|.++...|++++|+..|+++++ ..+..++..++.++.. .+++++|+.+|+++++.+ +..++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 44555666666666666666666666666655 1124556666666666 666666666666666553 5667777
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHH----cCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 276 LGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME----WNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 276 l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
+|.++.. .+++++|+..|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. +..++..+|.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 7777777 777777777777777653 66777777777777 777777777777777754 56677788888
Q ss_pred HHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh-
Q 002431 348 YKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD- 418 (922)
Q Consensus 348 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 418 (922)
|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++++.+| +.+++.+|.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 887 88888888888888876 457888999999999 9999999999999998866 7889999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 419 ---SGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 419 ---~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
.+++++|+++|+++++.+|++...
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999998765433
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.7e-20 Score=196.19 Aligned_cols=188 Identities=16% Similarity=0.098 Sum_probs=110.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 43 YYQLHDYDMCIARNEEALRLE----PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344566677777777766653 3345666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++......++. ....|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666665544333332 23445555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 199 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
.|.+...+. ++..+...++.++|+..+++++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 554433322 344444444445555555544443
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=9.2e-20 Score=187.87 Aligned_cols=208 Identities=19% Similarity=0.139 Sum_probs=193.1
Q ss_pred hCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 28 RNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 28 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
.+|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 45554 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 002431 107 LASAYMRKGRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 184 (922)
++.++...|++++|++.++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 7788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
+++|+..++++++..|.+...+..++.++...|++++|...++++++..|+
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999887
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=4.2e-19 Score=185.44 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=148.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIRYYLVAIELRPNFADAW 104 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 104 (922)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 355667777777777777777777777777776 5666777777777777 777777777777777664 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 002431 105 SNLASAYMR----KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA----QGLVQEAYSCYLEALRIQPTFAIAWSNLA 176 (922)
Q Consensus 105 ~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 176 (922)
..+|.+|.. .+++++|+..|+++++.+ ++.++..+|.++.. .+++++|+..|+++++.. +..++..++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 777777777 777777777777776653 66667777777776 677777777777766654 455566666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChhHHHhHHHHHHH
Q 002431 177 GLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248 (922)
Q Consensus 177 ~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 248 (922)
.++.. .+++++|+..++++++. .++.++..+|.++.. .+++++|+..|+++++..+ ..++..++.++..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 66666 66666666666666654 235566666666666 6666666666666655543 4455555555555
Q ss_pred ----cCChHHHHHHHHHHHhcCCC
Q 002431 249 ----RGQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 249 ----~g~~~~A~~~~~~~l~~~p~ 268 (922)
.+++++|+.+|+++++..|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555544
No 66
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.85 E-value=2e-21 Score=218.67 Aligned_cols=340 Identities=11% Similarity=0.081 Sum_probs=230.5
Q ss_pred ccceeeeecCCCCC---ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHH-H------------HH--HhccCceEEC
Q 002431 535 RRLRVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWR-Q------------RT--QSEAEHFVDV 596 (922)
Q Consensus 535 ~~~rig~~s~~~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~------------~~--~~~~~~~~~~ 596 (922)
++|||.+++..+.. ++++.++..+.+.+.+.++||++++.......... . .. ...+..++.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 47999999988543 67778899999999888899999986533221000 0 00 0001111211
Q ss_pred CC--------CC-------------HHHHHHHHH-----hCCCeEEEcCCCcCCCCchhhhh-----cCCCceEEecccc
Q 002431 597 SA--------MS-------------SDMIAKLIN-----EDKIQILINLNGYTKGARNEIFA-----MQPAPIQVSYMGF 645 (922)
Q Consensus 597 ~~--------~~-------------~~~~~~~i~-----~~~~dil~~~~~~~~~~~~~~~~-----~~~apvq~~~~g~ 645 (922)
+. .. ...+.+.++ ..++||+ |+|+....+++ ....|+.++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii-----~~~~~~~~~~~~~~~~~~~~~~v~~~h~~ 155 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVV-----HFHDWHTVFAGALIKKYFKIPAVFTIHRL 155 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEE-----EEESGGGHHHHHHHHHHHCCCEEEEESCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEE-----EecchhhhhhHHHHhhccCCCEEEEeccc
Confidence 11 00 122233333 5699999 66654333222 2347888876554
Q ss_pred CCC---------CCCC---ccc--------EEEecCccCCcCccC--------CCccceeecCCccccCCCccccccCCC
Q 002431 646 PGT---------TGAS---YID--------YLVTDEFVSPLRYAH--------IYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (922)
Q Consensus 646 ~~t---------~g~~---~~d--------~~~~d~~~~~~~~~~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (922)
... .++. ... +..+|.+++++.... ...+++..+|++.-.....+. ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~---~~~ 232 (439)
T 3fro_A 156 NKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES---YLT 232 (439)
T ss_dssp CCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGG---GSC
T ss_pred ccccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcc---ccc
Confidence 321 0111 000 013566666655311 134566666664322111110 000
Q ss_pred C----CCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhC--CCeEEEEecCChhhH--HHHHHHHHHcC
Q 002431 698 P----NCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRV--PNSALWLLRFPAAGE--MRLRAYAVAQG 766 (922)
Q Consensus 698 ~----~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~--~~l~~~~~~~g 766 (922)
+ .....|+++|++++ ++++.++|+ .|+.+.++++|.++.++. |+.+|+|+|+|+. . +.+++.+.+.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~-~~~~~l~~~~~~~~ 310 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP-ELEGWARSLEEKHG 310 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH-HHHHHHHHHHHHCT
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh-hHHHHHHHHHhhcC
Confidence 0 11237888999888 888888865 499999999999998877 9999999999875 4 78889898887
Q ss_pred CCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--
Q 002431 767 VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-- 843 (922)
Q Consensus 767 ~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-- 843 (922)
+.|.|.|.++.++...+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+. -| .+ +++
T Consensus 311 ---~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~------~~-~g-~~~~~ 379 (439)
T 3fro_A 311 ---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT------NE-TG-ILVKA 379 (439)
T ss_dssp ---TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCC------TT-TC-EEECT
T ss_pred ---CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEE------cC-ce-EEeCC
Confidence 68899999999999999999999999999999 999999999999999765543333221 14 55 444
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 844 NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 844 ~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
.|++++++++.++.. |++.+++++++.++... .|+++.++++++++|+++.+
T Consensus 380 ~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 380 GDPGELANAILKALELSRSDLSKFRENCKKRAM---SFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH---TSCHHHHHHHHHHHHHTCSC
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---hCcHHHHHHHHHHHHHHHHH
Confidence 499999999999999 99999999999998763 29999999999999988764
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=5.1e-18 Score=195.82 Aligned_cols=421 Identities=10% Similarity=0.017 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 002431 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR---LNEAAQCCR 125 (922)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 125 (922)
..+-+..|++.+..+|.+...|..++....+.++++.+...|++++...|.....|...+....+.|+ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCcHHHHHHHHHHHH---------Hc
Q 002431 126 QALALNP--LLVDAHSNLGNLMKAQGLV--------QEAYSCYLEALRI----QPTFAIAWSNLAGLFM---------ES 182 (922)
Q Consensus 126 ~~l~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~ 182 (922)
+++...| .+++.|..........++. +...+.|++++.. ++.+..+|........ .+
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9999884 6888888888777666554 3344788888863 6667778887776644 34
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHH-------------HcCChHHHHHHHHHHHhh-------C--------
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYK-------------ALGMPQEAIMCYQRAVQT-------R-------- 233 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~-------~-------- 233 (922)
++.+.+..+|++++........ .|......-. ...+++.|...+.+.... .
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 4578899999999975323222 2222111111 112344455555442211 1
Q ss_pred ----C-----C---hhHHHhHHHHHHHcC-------ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHH
Q 002431 234 ----P-----N---AIAFGNLASTYYERG-------QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI-QCY 293 (922)
Q Consensus 234 ----p-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~ 293 (922)
| . ...|..........+ ..+.....|++++...|.+.+.|+..+..+...|+.++|. ++|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 123333333322221 1244567899999999999999999999999999999997 999
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcC-----------CC-----------CchhhhhHHHHHHHc
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-----------TG-----------LSAPFNNLAVIYKQQ 351 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------~~-----------~~~~~~~la~~~~~~ 351 (922)
++++...|.+...+..++......|++++|..+|++++... |. ...+|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998752 32 345788889998899
Q ss_pred CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 352 GNYADAISCYNEVLRI-DPLAADGLVNRGNTYKEIGR-VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 352 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
|+.+.|..+|.++++. .+.....+...+.+..+.++ .+.|.++|+++++..|+++..+...+......|+.+.|..+|
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999987 55566778777777777654 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC---CHHHHHHHHHhhcccCChhhHhHHHHHHHHH
Q 002431 430 KQALLLRPD---FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (922)
Q Consensus 430 ~~al~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 469 (922)
+++++..|+ ....+..++..-...|+.+.+.++.+++.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999884 4566777777777778877777777666653
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=1.5e-20 Score=212.15 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=186.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI-DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCR 125 (922)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (922)
+++++++..+++.....|.++.+++.+|.++...|++ ++|++.|+++++.+|++..++..+|.+|...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467888888888888888888888888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------CCHHHH
Q 002431 126 QALALNPLLVDAHSNLGNLMKAQ---------GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES--------GDLNRA 188 (922)
Q Consensus 126 ~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A 188 (922)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++..+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88888887 68888888888888 8888888888888888888888888888888888 888999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcCChHHHHHHHHHH
Q 002431 189 LQYYKEAVKLKP---TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (922)
Q Consensus 189 ~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 262 (922)
+..|+++++.+| +++.++..+|.++...|++++|+..|+++++..|+ ..++..++.++...|++++|+..+.+.
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988888 88888999999999999999999999999888887 778888888888888888888776654
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2.8e-19 Score=180.39 Aligned_cols=207 Identities=24% Similarity=0.192 Sum_probs=143.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+|.++.+++.+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 109 SAYMRK-GRLNEAAQCCRQALA--LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 109 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777776 44555666666677777777777777777776666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 186 NRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 186 ~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
++|...++++++..| .+...+..++.++...|+.++|..+++.+.+..|+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 666666666666666 66666666666666666666666666666655555
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=7.5e-20 Score=178.40 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=113.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
++.+++.+|.++..+|++++|++.|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|++..++..++.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (922)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (922)
...+++++|...+.++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCCC
Q 002431 192 YKEAVKLKPTF 202 (922)
Q Consensus 192 ~~~~l~~~p~~ 202 (922)
|+++++.+|++
T Consensus 164 ~~~al~~~p~~ 174 (184)
T 3vtx_A 164 FKKALEKEEKK 174 (184)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHhCCccC
Confidence 66666665543
No 71
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.85 E-value=5.3e-22 Score=219.55 Aligned_cols=326 Identities=12% Similarity=0.122 Sum_probs=214.0
Q ss_pred CChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCC-----HHHHHHHHHhCCCe
Q 002431 548 NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMS-----SDMIAKLINEDKIQ 614 (922)
Q Consensus 548 ~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~i~~~~~d 614 (922)
.++++.++..+.+.+.+.++||++++...... ... ......+..+. ... ...+.+.+++.++|
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D 101 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFR--LNK--VYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLD 101 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC------C--CCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc--ccc--cCCceEEEecccccccccccccccHHHHHHHHHHHHHcCCC
Confidence 35677888899999988889999998643211 000 00000111111 001 24578888999999
Q ss_pred EEEcCCCcCCCCch----hhhhcC----CCceEEeccccCC-CCCCC-ccc------EEEecCccCCcCccCCC------
Q 002431 615 ILINLNGYTKGARN----EIFAMQ----PAPIQVSYMGFPG-TTGAS-YID------YLVTDEFVSPLRYAHIY------ 672 (922)
Q Consensus 615 il~~~~~~~~~~~~----~~~~~~----~apvq~~~~g~~~-t~g~~-~~d------~~~~d~~~~~~~~~~~~------ 672 (922)
|+ |+++... .+++.+ ..|+.++..+... ..+.. ... +..+|.+++++......
T Consensus 102 vv-----~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~ 176 (394)
T 2jjm_A 102 IL-----HVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVK 176 (394)
T ss_dssp EE-----EECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHHHTC
T ss_pred EE-----EEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhhC
Confidence 99 4443221 222221 3788877655311 01111 110 11345566665532111
Q ss_pred -ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEec
Q 002431 673 -SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR 749 (922)
Q Consensus 673 -~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (922)
.+++..+|++.-... ..+......|+++|++++.+++++++++ .|+.+.++++|.++.++ ++.+|+|+|
T Consensus 177 ~~~~~~vi~ngv~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G 248 (394)
T 2jjm_A 177 PNKDIQTVYNFIDERV-------YFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVG 248 (394)
T ss_dssp CSSCEEECCCCCCTTT-------CCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEEC
T ss_pred CcccEEEecCCccHHh-------cCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEEC
Confidence 245555554321111 1111122367789998888888888876 49999999999998776 668999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
+|+. .+.+++.+.++|+ .++|.|.|. ..+...+|+.+|++|.|+.++| |++++|||++|+|||+.+......-+.
T Consensus 249 ~g~~-~~~l~~~~~~~~l-~~~v~~~g~--~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~ 324 (394)
T 2jjm_A 249 DGPE-FCTILQLVKNLHI-EDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQ 324 (394)
T ss_dssp CCTT-HHHHHHHHHTTTC-GGGBCCCBS--CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCC
T ss_pred CchH-HHHHHHHHHHcCC-CCeEEEeCc--hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhh
Confidence 9876 7899999999999 589999995 5677888999999999998888 999999999999999766543333221
Q ss_pred HHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002431 829 GSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSLHCSG 903 (922)
Q Consensus 829 ~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~~~~~ 903 (922)
. |-.+ +++ .|++++++++.++..|++.+.+++++.++.. ...|+++.++++++++|+++..+...|
T Consensus 325 ~------~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~ 392 (394)
T 2jjm_A 325 H------GDTG-YLCEVGDTTGVADQAIQLLKDEELHRNMGERARESV--YEQFRSEKIVSQYETIYYDVLRDDKNG 392 (394)
T ss_dssp B------TTTE-EEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHTC------
T ss_pred c------CCce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 0 2233 444 3899999999999999999999999998876 234999999999999999988765544
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.3e-19 Score=192.63 Aligned_cols=220 Identities=9% Similarity=-0.032 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHc
Q 002431 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQ-------LHDY-------DMCIARNEEALR-LEPRFAECYGNMANAWKEK 80 (922)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 80 (922)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ .+|++..+|..+|..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677888888888888888888888877763 4664 788888888887 5788888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 002431 81 GDIDLAIRYYLVAIELRPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCY 158 (922)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 158 (922)
|++++|...|+++++..|.++. +|..++.++.+.|++++|...|+++++..|....++...+.+... .|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888887777765 778888888888888888888888887777777776655555433 57788888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002431 159 LEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL---KP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (922)
Q Consensus 159 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (922)
+++++.+|+++.+|..++..+...|++++|...|++++.. .| +...++..++..+...|+.++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 8888777777777777777777778888888888887774 33 2556777777777777777777777777777777
Q ss_pred C
Q 002431 235 N 235 (922)
Q Consensus 235 ~ 235 (922)
+
T Consensus 273 ~ 273 (308)
T 2ond_A 273 E 273 (308)
T ss_dssp T
T ss_pred c
Confidence 5
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.2e-19 Score=189.72 Aligned_cols=250 Identities=11% Similarity=0.083 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHc
Q 002431 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKA-------QGLV-------QEAYSCYLEALR-IQPTFAIAWSNLAGLFMES 182 (922)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 182 (922)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|...|+++++ ..|++..+|..++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556666666666666666666555542 3554 666666666666 4666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHH-cCChHHHHHHH
Q 002431 183 GDLNRALQYYKEAVKLKPTFPD-AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE-RGQADMAILYY 259 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A~~~~ 259 (922)
|++++|...|+++++..|.++. +|..++.++...|++++|+..|+++++..|. ...+...+..... .|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666654 6666666666666666666666666666554 4444433333222 56777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 260 KQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL---QP-SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 260 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
+++++.+|++..+|..++..+...|++++|..+|+++++. .| ....+|..++..+...|++++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777764 33 2455666666666667777777777777777666
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (922)
++..... ++.+ ..-.+.+.++|+++..+..+|
T Consensus 273 ~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 273 EEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp TTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred cccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 6443321 1111 111144556677776666555
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=4.4e-20 Score=208.40 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV-DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 254 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
+++..+++.....|....+++.+|.++...|++ ++|++.|+++++.+|+++.++..+|.+|...|++++|+..|+++++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444 4444444444444444444444444444444444444444444444
Q ss_pred cCCCCchhhhhHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh--------CCHHHHHHHH
Q 002431 333 VTTGLSAPFNNLAVIYKQQ---------GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI--------GRVTDAIQDY 395 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~ 395 (922)
.+|+ ..++..+|.++... |++++|+..|+++++++|+++.+++.+|.++... |++++|+..|
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 4444 34444444444444 4444444444444444444444444444444444 4444444444
Q ss_pred HHHHhhCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhH
Q 002431 396 IRAITIRP---TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDR 461 (922)
Q Consensus 396 ~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 461 (922)
+++++++| +++.+++.+|.+|...|++++|++.|+++++++|+++.++.++...+...++++++..
T Consensus 245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4444444444444444444444444444444444444444444444444444444443
No 75
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.84 E-value=3.6e-21 Score=214.07 Aligned_cols=337 Identities=12% Similarity=0.067 Sum_probs=220.0
Q ss_pred CCcccceeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECC--------CCC-
Q 002431 532 GGLRRLRVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--------AMS- 600 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 600 (922)
...++|||.++++.+.. +++..++..+.+.+.+.++||++++....... ... +......++.++ .+.
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK-LPD-YVVSGGKAVPIPYNGSVARLRFGP 93 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC-CCT-TEEECCCCC------------CCH
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc-CCc-ccccCCcEEeccccCCcccccccH
Confidence 45678999999987643 45557888888888888899999987644321 000 000000111111 111
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCC-C----cc--cEEEecCccCCcCccC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGA-S----YI--DYLVTDEFVSPLRYAH 670 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~-~----~~--d~~~~d~~~~~~~~~~ 670 (922)
...+.+.|++.++||++-........ ..++.+ ...|+.++..+....... . .+ -+..+|.+++++....
T Consensus 94 ~~~~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 172 (406)
T 2gek_A 94 ATHRKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLAR 172 (406)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSSH-HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCccchHH-HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHH
Confidence 25688889999999996544333221 111222 246888776553221110 0 00 0112344444443311
Q ss_pred C-----C-ccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHHhhCC
Q 002431 671 I-----Y-SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNILRRVP 741 (922)
Q Consensus 671 ~-----~-~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~~il~~~p 741 (922)
. + .+++ .+|+..-. ....+. ....+++++.+++++++++ .|+.+.++++|.++.++.|
T Consensus 173 ~~~~~~~~~~~~-vi~~~v~~------~~~~~~------~~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~ 239 (406)
T 2gek_A 173 RWQMEALGSDAV-EIPNGVDV------ASFADA------PLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFP 239 (406)
T ss_dssp HHHHHHHSSCEE-ECCCCBCH------HHHHTC------CCCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTST
T ss_pred HHHHHhcCCCcE-EecCCCCh------hhcCCC------chhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCC
Confidence 1 1 2233 44432211 001011 1112344455677777777 5999999999999999999
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC-CCC-hhHHHHHHHcCCCeeeec
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-CNA-HTTGTDILWAGLPMITLP 819 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~-~~g-~~t~~eal~~g~Pvv~~~ 819 (922)
+.+|+|+|.++. +.+++.++++ .++|.|.|.++..+...+|+.+|++|.|+. ++| |++++|||++|+|||+.+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~---~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~ 314 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDL---AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASD 314 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGG---GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhc---cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEec
Confidence 999999999875 7788877766 489999999999999999999999999975 788 999999999999999765
Q ss_pred CCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 820 LEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 820 ~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
...+..- + .-|..+ +++ .|++++++++.++..|++.+.+++++.++... .|+++.++++++++|++++
T Consensus 315 ~~~~~e~-----i-~~~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 315 LDAFRRV-----L-ADGDAG-RLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp CHHHHHH-----H-TTTTSS-EECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHHHHC
T ss_pred CCcHHHH-----h-cCCCce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 4322221 2 114555 555 79999999999999999999999999998763 5999999999999999887
Q ss_pred HH
Q 002431 898 SL 899 (922)
Q Consensus 898 ~~ 899 (922)
++
T Consensus 385 ~~ 386 (406)
T 2gek_A 385 GA 386 (406)
T ss_dssp CT
T ss_pred hh
Confidence 53
No 76
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=4.2e-20 Score=196.87 Aligned_cols=371 Identities=13% Similarity=0.119 Sum_probs=158.1
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
-+.|++++|.+.++++ +++.+|..+|.++.+.|++++|++.|.++ .++..+..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4557788888888887 23458888888888888888888888653 4556778888888888888888888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 002431 90 YLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (922)
Q Consensus 90 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (922)
++.+.+..++ +.+...++.+|.+.|+++++.++++. | +..++..+|..+...|++++|...|.++
T Consensus 84 l~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 8877775433 66777788888888888887776642 3 3457888888888888888888888765
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHc
Q 002431 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYER 249 (922)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 249 (922)
..|..++.++.+.|++++|++.++++ +++.+|...+.++...|+++.|..+...+. ..| .-...++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a--d~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA--DELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH--HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH--hhHHHHHHHHHHC
Confidence 35777888888888888888888877 357778888888888888888866655422 333 3344577777778
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC-----CChHHHHhHHHHHHHcCChhH
Q 002431 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV--GRVDEAIQCYNQCLSLQP-----SHPQALTNLGNIYMEWNMLPA 322 (922)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~ 322 (922)
|++++|+.+++++++.++.....+..++.++.+- ++..+.++.|...+.+.| .+...|..+..+|.+.++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888888888888877777777777777777654 345555555555444445 556667777777777777777
Q ss_pred HHHHHHHHHhc------------CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHHhCCH
Q 002431 323 AASYYKATLAV------------TTGLSAPFNNLAVIYKQQGNYADAISCYNEVL--RIDPLAADGLVNRGNTYKEIGRV 388 (922)
Q Consensus 323 A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~ 388 (922)
|.....+.... .+.+.+.++.....|. +....++..+..++ ++++ ......+.+.|..
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l 372 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCc
Confidence 76655443322 3445555555555554 22333344444444 2222 1112233444454
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
.-...+++.+.. -++..+--.+-.+|....+++
T Consensus 373 ~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 373 PLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp TTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHH
Confidence 444444433332 233344444555555555554
No 77
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.83 E-value=2.9e-19 Score=193.35 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=200.6
Q ss_pred cceeeeecCC--------C------CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCH
Q 002431 536 RLRVGYVSSD--------F------GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS 601 (922)
Q Consensus 536 ~~rig~~s~~--------~------~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (922)
+|||.+++.. + ..+++..++..+.+.+.+.++||.+++........ ....-......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~---------~~~~~~~~~~~ 73 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR---------PGLTVVPAGEP 73 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS---------TTEEECSCCSH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC---------CcceeccCCcH
Confidence 4899999988 2 23556688888999988888999999876433210 11111222234
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc--CCCceEEeccccCCCCCCCcccEEEecCccCCcCccCC-C--ccce
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-Y--SEKL 676 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--~~apvq~~~~g~~~t~g~~~~d~~~~d~~~~~~~~~~~-~--~e~~ 676 (922)
..+.+.+++.++||+ |+++....++.. ...| .++..+...... .+|.+++++..... + .+++
T Consensus 74 ~~l~~~l~~~~~Dvi-----~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~-------~~d~ii~~S~~~~~~~~~~~~~ 140 (342)
T 2iuy_A 74 EEIERWLRTADVDVV-----HDHSGGVIGPAGLPPGTA-FISSHHFTTRPV-------NPVGCTYSSRAQRAHCGGGDDA 140 (342)
T ss_dssp HHHHHHHHHCCCSEE-----EECSSSSSCSTTCCTTCE-EEEEECSSSBCS-------CCTTEEESCHHHHHHTTCCTTS
T ss_pred HHHHHHHHhcCCCEE-----EECCchhhHHHHhhcCCC-EEEecCCCCCcc-------cceEEEEcCHHHHHHHhcCCce
Confidence 588999999999999 444433222222 3357 555544432111 16666666554221 1 2233
Q ss_pred eecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhh
Q 002431 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG 754 (922)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 754 (922)
..+|+. .+.. ...+... ++++ ..+++.++|+ .|+.+.+++++.++ +.+|+|+|.|+.
T Consensus 141 ~vi~ng------vd~~--~~~~~~~------~~~~-~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~~- 199 (342)
T 2iuy_A 141 PVIPIP------VDPA--RYRSAAD------QVAK-EDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAWE- 199 (342)
T ss_dssp CBCCCC------BCGG--GSCCSTT------CCCC-CSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCCC-
T ss_pred EEEcCC------CChh--hcCcccc------cCCC-CCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCccc-
Confidence 333332 2111 1111111 1222 2345556654 69999999999886 689999999875
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC----------CCC-hhHHHHHHHcCCCeeeecCCcc
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL----------CNA-HTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~----------~~g-~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
.+.+++.++++| ++|+|+|.++..+...+|+.+|+++.|+. ++| |++++|||++|+|||+.+....
T Consensus 200 ~~~l~~~~~~~~---~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~ 276 (342)
T 2iuy_A 200 PEYFDEITRRYG---STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCL 276 (342)
T ss_dssp HHHHHHHHHHHT---TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTH
T ss_pred HHHHHHHHHHhC---CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCCh
Confidence 788888888877 79999999999999999999999999998 788 9999999999999997665433
Q ss_pred hhhhHHHHHHhc-CCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 824 ATRVAGSLCLAT-GLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 824 ~~r~~~~~~~~~-g~~~~~i~~-~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..-+ ... |..+ ++++ |.+++++++.++.+ ....++..++ .|+++.++++++++|+++.++
T Consensus 277 ~e~~-----~~~~~~~g-~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~------~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 277 AEIV-----PSVGEVVG-YGTDFAPDEARRTLAGLPA----SDEVRRAAVR------LWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHG-----GGGEEECC-SSSCCCHHHHHHHHHTSCC----HHHHHHHHHH------HHBHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-----cccCCCce-EEcCCCHHHHHHHHHHHHH----HHHHHHHHHH------hcCHHHHHHHHHHHHHHHHcc
Confidence 3222 110 3344 5555 99999999999886 2233333322 399999999999999998753
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=9.5e-20 Score=213.09 Aligned_cols=176 Identities=24% Similarity=0.422 Sum_probs=164.1
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhh
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 343 (922)
+..|++.+++.++|.++.++|++++|++.|+++++++|++..+++++|.+|.+.|++++|+..|+++++++|++..++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHH
Q 002431 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (922)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (922)
+|.++..+|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+++.++.++|.++..+|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 002431 424 AAIKSYKQALLLRPDF 439 (922)
Q Consensus 424 ~A~~~~~~al~~~p~~ 439 (922)
+|.+.|++++++.|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999999886653
No 79
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.82 E-value=3.1e-21 Score=211.96 Aligned_cols=329 Identities=13% Similarity=0.090 Sum_probs=215.7
Q ss_pred ceeeeecCCC-CCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC--------HHHHH
Q 002431 537 LRVGYVSSDF-GNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS--------SDMIA 605 (922)
Q Consensus 537 ~rig~~s~~~-~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~ 605 (922)
|||.+++..+ ..+++..++..+.+.+.+.++||++++....... .+ ...++.++. .. ...+.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~-----~~~v~~~~~~~~~~~~~~~~~~~~l~ 73 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--PK-----AFELIQVPVKSHTNHGRNAEYYAWVQ 73 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--CT-----TCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--CC-----CcEEEEEccCcccchhhHHHHHHHHH
Confidence 6899998875 4466778888999988888899999886532211 11 122333322 21 23577
Q ss_pred HHHHhCCCeEEEcCCCcCCCCchhh---hhcCCC--ceEEeccccCCCCCCCc------cc---EE--EecCccCCcCcc
Q 002431 606 KLINEDKIQILINLNGYTKGARNEI---FAMQPA--PIQVSYMGFPGTTGASY------ID---YL--VTDEFVSPLRYA 669 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~~~---~~~~~a--pvq~~~~g~~~t~g~~~------~d---~~--~~d~~~~~~~~~ 669 (922)
+.|++.++||++ ++.....+ +..+.. |+..+..+.... .... +. +. .+|.+++++...
T Consensus 74 ~~i~~~~~Dvv~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 147 (374)
T 2iw1_A 74 NHLKEHPADRVV-----GFNKMPGLDVYFAADVCYAEKVAQEKGFLYR-LTSRYRHYAAFERATFEQGKSTKLMMLTDKQ 147 (374)
T ss_dssp HHHHHSCCSEEE-----ESSCCTTCSEEECCSCCHHHHHHHHCCHHHH-TSHHHHHHHHHHHHHHSTTCCCEEEESCHHH
T ss_pred HHHhccCCCEEE-----EecCCCCceeeeccccccceeeeecccchhh-hcHHHHHHHHHHHHHhhccCCcEEEEcCHHH
Confidence 888999999994 44332221 111111 111111111100 0000 00 00 245555555431
Q ss_pred C--------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh
Q 002431 670 H--------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR 739 (922)
Q Consensus 670 ~--------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~ 739 (922)
. ...+++..+|+..-..... +....+.....|+++|++++.+++++++++ .|+.+.++++|.++.++
T Consensus 148 ~~~~~~~~~~~~~~~~vi~ngv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~ 224 (374)
T 2iw1_A 148 IADFQKHYQTEPERFQILPPGIYPDRKY---SEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPES 224 (374)
T ss_dssp HHHHHHHHCCCGGGEEECCCCCCGGGSG---GGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHH
T ss_pred HHHHHHHhCCChhheEEecCCcCHHhcC---cccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhc
Confidence 1 1134555555433211110 000000011267889999888888888876 59999999999988776
Q ss_pred -CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeee
Q 002431 740 -VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT 817 (922)
Q Consensus 740 -~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~ 817 (922)
.|+.+|+++|.|+ .+.+++.++++|+ .++|.|+|. .++...+|+.+|+++.|+.++| |++++|||++|+|||+
T Consensus 225 ~~~~~~l~i~G~g~--~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 225 LRHNTLLFVVGQDK--PRKFEALAEKLGV-RSNVHFFSG--RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp HHHTEEEEEESSSC--CHHHHHHHHHHTC-GGGEEEESC--CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE
T ss_pred cCCceEEEEEcCCC--HHHHHHHHHHcCC-CCcEEECCC--cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEE
Confidence 6899999999876 4678999999999 589999997 5678888999999999998888 9999999999999998
Q ss_pred ecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 818 LPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 818 ~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.+.......+.. |-.+ +++. |++++++++.++.+|++.+++++++.++.... +++..+++.+++.++
T Consensus 300 ~~~~~~~e~i~~------~~~g-~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 369 (374)
T 2iw1_A 300 TAVCGYAHYIAD------ANCG-TVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIIT 369 (374)
T ss_dssp ETTSTTTHHHHH------HTCE-EEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHH
T ss_pred ecCCCchhhhcc------CCce-EEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Confidence 775544443322 3334 4432 89999999999999999999999999987654 677788888888776
Q ss_pred HH
Q 002431 895 KM 896 (922)
Q Consensus 895 ~~ 896 (922)
..
T Consensus 370 ~~ 371 (374)
T 2iw1_A 370 GG 371 (374)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 80
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=6.2e-20 Score=195.53 Aligned_cols=352 Identities=13% Similarity=0.125 Sum_probs=196.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (922)
..+.|+.++|.+++++. +.+.+|..+|.++.+.|++++|++.|.++ +++..+...+..+...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44678899999999988 33569999999999999999999999774 456689999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+++.+.+..+ ++.+...++.+|.+.|++.++.+.++. | +..+|..+|..+...|++++|..+|.++
T Consensus 83 yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9998887543 467788899999999999998887742 4 4469999999999999999999999976
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKD 282 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 282 (922)
..+..++.++.++|++++|++.++++ .+..+|..+..++...|+++.|..+... +...|+. ...++..|.+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek 219 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD 219 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence 47899999999999999999999999 3688999999999999999999777665 3345544 4468889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHc--CChhHHHHHHHHHHhcCC-----CCchhhhhHHHHHHHcCCHH
Q 002431 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW--NMLPAAASYYKATLAVTT-----GLSAPFNNLAVIYKQQGNYA 355 (922)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~ 355 (922)
.|++++|+.++++++..++....++..++.+|.+- ++..+.++.|...+.+.| .+...|..+..+|.+.++++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999999999999999999999999988764 567778888877777777 78889999999999999999
Q ss_pred HHHHHHHHHHcc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHhcCC
Q 002431 356 DAISCYNEVLRI------------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAI--TIRPTMAEAHANLASAYKDSGH 421 (922)
Q Consensus 356 ~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~ 421 (922)
.|+...-+-... .+.+.+.++.....|. +...+++..+..++ .+++ ......+.+.|+
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~ 371 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQ 371 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTC
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCC
Confidence 998866555433 5677888888877777 55667788888888 4444 345566788888
Q ss_pred HHHHHHHHHHHHhc
Q 002431 422 VEAAIKSYKQALLL 435 (922)
Q Consensus 422 ~~~A~~~~~~al~~ 435 (922)
..-...+++.+...
T Consensus 372 l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 372 LPLVKPYLRSVQNH 385 (449)
T ss_dssp TTTTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHh
Confidence 88888888776644
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=6e-19 Score=194.34 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=170.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHH----HHHHhcCCHHHHH-----------HHHHHHHhcCCC
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLG----AIYYQLHDYDMCI-----------ARNEEALRLEPR 65 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la----~~~~~~g~~~~A~-----------~~~~~al~~~p~ 65 (922)
.-.....+.+++++|..+++++.+.-+ .+...+.... ......++++.+. +.++++-. .+.
T Consensus 17 ~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~ 95 (383)
T 3ulq_A 17 NEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQA 95 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCC
Confidence 445567788888888888888765322 2333332111 1222233333443 44444322 222
Q ss_pred cH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 66 FA------ECYGNMANAWKEKGDIDLAIRYYLVAIEL---RPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 66 ~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
.. ..++.+|..+...|++++|+..|+++++. .++ ...++..+|.++...|++++|+..++++++..+.
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 22 23444788888888888888888888775 222 4567788888888888888888888888776332
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 002431 134 -------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVK--- 197 (922)
Q Consensus 134 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~--- 197 (922)
...++..+|.++...|++++|+..|+++++..+.. ..++.++|.+|...|++++|+..++++++
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 23466777777777777777777777777653321 23566667777777777777777776666
Q ss_pred --cC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C-hhHHHhHHHHHHHcCC---hHHHHHHHHHHHhc
Q 002431 198 --LK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N-AIAFGNLASTYYERGQ---ADMAILYYKQAIGC 265 (922)
Q Consensus 198 --~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~ 265 (922)
.+ |....++..+|.++...|++++|...++++++..+ . ...+..++.++...|+ +++|+..+++. ..
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~ 334 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML 334 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC
Confidence 23 44455666666666666666666666666665421 1 1123445555555555 44444444443 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
.+....++..+|.++...|++++|..+++++++
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222233444455555555555555555555444
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=8e-19 Score=177.76 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=180.3
Q ss_pred ChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHH
Q 002431 235 NAIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNI 313 (922)
Q Consensus 235 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (922)
++..+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 367889999999999999999999999999988 8888888999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLS-------APFNNLAVIYKQQGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKE 384 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 384 (922)
+...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999988 66889999999999999999999999999999 88999999999976
Q ss_pred hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 002431 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (922)
.| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|+++.+...+...
T Consensus 166 ~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 166 NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 65 345677777776665443 33445566789999999999999999999887665443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=1.4e-18 Score=175.91 Aligned_cols=209 Identities=18% Similarity=0.144 Sum_probs=158.0
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34567788888888888888888888888888887 77777777888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLV-------DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAWSNLAGLF 179 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~ 179 (922)
.++...|++++|+..++++++.+|++. .++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 888888888888888888888888877 55788888888888888888888888888888 778888888887
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHHhHHHH
Q 002431 180 MESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLAST 245 (922)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 245 (922)
...| ...++++....+.....+. +......+.+++|+..++++++..|+ ..+...++.+
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6544 3445666666555544332 33344556678888888888888877 5555555544
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=1.4e-18 Score=191.39 Aligned_cols=231 Identities=15% Similarity=0.160 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh---CCC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCC-------CcHH
Q 002431 206 YLNLGNVYKALGMPQEAIMCYQRAVQT---RPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDP-------RFLE 271 (922)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~ 271 (922)
++.+|..+...|++++|+..++++++. .++ ..++..+|.++...|++++|+..+++++...+ ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 334666666666666666666666654 222 45566666666667777777777766664422 2234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHh-----cC-CCCch
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLA-----VT-TGLSA 339 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~-~~~~~ 339 (922)
++..+|.++...|++++|+..++++++..+... .++..+|.+|...|++++|+.+|+++++ .. |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 677777788888888888888887777643322 3677778888888888888888887777 34 55566
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRID-----PLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 77788888888888888888888887763 2223345667888888888 67777777665 333444567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 412 LASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
+|.+|...|++++|..+|++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887643
No 85
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.81 E-value=4.8e-20 Score=209.94 Aligned_cols=178 Identities=11% Similarity=-0.014 Sum_probs=142.5
Q ss_pred CcCCCCCCCC-cEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceE-EcCC
Q 002431 703 KRSDYGLPED-KFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQII-FTDV 777 (922)
Q Consensus 703 ~r~~~~l~~~-~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~-f~~~ 777 (922)
.|+++|++++ .+++++++|+ .|+.+.++++|.++.+ ++.+|+|+|+|+. ..+.+++.+.++| ++|+ |.|.
T Consensus 280 ~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~---~~v~~~~g~ 354 (485)
T 1rzu_A 280 VAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHH---GRVGVAIGY 354 (485)
T ss_dssp HHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTT---TTEEEEESC
T ss_pred HHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCC---CcEEEecCC
Confidence 5677889875 6688888875 5999999999999876 5899999998853 3678888888875 6887 7888
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---------CCCcccc--CC
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---------LGEEMIV--NS 845 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---------~~~~~i~--~~ 845 (922)
+.++...+|+.+|+||.|+.++| |++++|||++|+|||+........-+. -| ..+ +++ .|
T Consensus 355 -~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~------~~~~~~~~~~~~~G-~l~~~~d 426 (485)
T 1rzu_A 355 -NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVI------DANHAALASKAATG-VQFSPVT 426 (485)
T ss_dssp -CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCC------BCCHHHHHTTCCCB-EEESSCS
T ss_pred -CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheec------ccccccccccCCcc-eEeCCCC
Confidence 56666788999999999999999 999999999999999654322222111 13 455 444 48
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 846 MKEYEERAVSLA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 846 ~~~~~~~~~~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
++++++++.++. .|++.+.+++++.++ ..|+++.++++++++|+++..
T Consensus 427 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 427 LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhhC
Confidence 999999999998 899999999988865 359999999999999998753
No 86
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.80 E-value=7.3e-20 Score=208.42 Aligned_cols=178 Identities=14% Similarity=0.006 Sum_probs=142.0
Q ss_pred CcCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh-hHHHHHHHHHHcCCCCCceE-EcC
Q 002431 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQII-FTD 776 (922)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~rv~-f~~ 776 (922)
.|+++|+++ +.+++++++|+ .|+.+.++++|.++.+ ++.+|+|+|+|+. ..+.+++.+.++| ++|+ |.|
T Consensus 280 ~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~---~~v~~~~g 354 (485)
T 2qzs_A 280 LQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYP---GQVGVQIG 354 (485)
T ss_dssp HHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHST---TTEEEEES
T ss_pred HHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCC---CcEEEeCC
Confidence 567788886 66777777765 5999999999999876 5899999998753 3678888888875 6886 888
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcC---------CCCcccc--C
Q 002431 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG---------LGEEMIV--N 844 (922)
Q Consensus 777 ~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g---------~~~~~i~--~ 844 (922)
. +.++...+|+.+||||.|+.++| |++++|||++|+|||+.....+..-+. -| ..+ +++ .
T Consensus 355 ~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~------~~~~~~~~~~~~~G-~l~~~~ 426 (485)
T 2qzs_A 355 Y-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVS------DCSLENLADGVASG-FVFEDS 426 (485)
T ss_dssp C-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCC------BCCHHHHHTTCCCB-EEECSS
T ss_pred C-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceec------cCccccccccccce-EEECCC
Confidence 8 66666788999999999999999 999999999999999654322222111 13 455 554 4
Q ss_pred CHHHHHHHHHHHh---cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHH
Q 002431 845 SMKEYEERAVSLA---LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS 898 (922)
Q Consensus 845 ~~~~~~~~~~~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~ 898 (922)
|++++++++.+++ .|++.+.+++++.++ ..|+++.++++++++|++++.
T Consensus 427 d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 427 NAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhh
Confidence 8999999999998 799999999988865 249999999999999998865
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.78 E-value=5e-17 Score=168.65 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---CCHHHH
Q 002431 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASAY----MRK---GRLNEA 120 (922)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A 120 (922)
++|++.+++++..+|++..+|+..+.++...| +++++++.+++++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45555555555555555555555555555555 555555555555555555555555555555 444 455555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC------HHHHHHHH
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ--EAYSCYLEALRIQPTFAIAWSNLAGLFMESGD------LNRALQYY 192 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~ 192 (922)
+..++++++.+|++..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...+. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 55555555555555555555555555555555 55566666666666666666665555555554 56666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhC---CC-hhHHHhHHHHHHHcCChHHHHHHHHHHHh-cC
Q 002431 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQE-AIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIG-CD 266 (922)
Q Consensus 193 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~ 266 (922)
++++..+|.+..+|+.++.++...|+..+ ....+.++++.. +. ..++..++.++.+.|+.++|+++|+.+.+ .+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 66666666666666666666666665433 333444444433 22 55666666666666666666666666664 56
Q ss_pred CCcHHHHHHHHH
Q 002431 267 PRFLEAYNNLGN 278 (922)
Q Consensus 267 p~~~~~~~~l~~ 278 (922)
|.....|...+.
T Consensus 290 pir~~yW~~~~~ 301 (306)
T 3dra_A 290 PIRSNFWDYQIS 301 (306)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 666666655544
No 88
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=189.86 Aligned_cols=248 Identities=22% Similarity=0.257 Sum_probs=131.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002431 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236 (922)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 236 (922)
+|....++..++.++...|++++|+..++++++. .+....++..+|.++...|++++|+..+++++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE-- 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Confidence 3445566666666666666666666666666653 333444566666666666666666666666654310
Q ss_pred hHHHhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHH
Q 002431 237 IAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--------PSHPQAL 307 (922)
Q Consensus 237 ~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~ 307 (922)
+.. ...|....++..+|.++...|++++|+.+++++++.. |....++
T Consensus 101 ------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 101 ------------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp ------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 000 0012223344444444444444444444444444432 2223344
Q ss_pred HhHHHHHHHcCChhHHHHHHHHHHhc--------CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCC---------C
Q 002431 308 TNLGNIYMEWNMLPAAASYYKATLAV--------TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------L 370 (922)
Q Consensus 308 ~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~ 370 (922)
..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++..+ .
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555555555555555555555444 333344455555666666666666666666554321 1
Q ss_pred ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 371 ------AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 371 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
....+...+..+...+.+.+|...++++....|....++..+|.+|...|++++|.++|++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12234444555566677777788888888888888888888899998889999999999888887664
No 89
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=186.61 Aligned_cols=247 Identities=22% Similarity=0.297 Sum_probs=166.3
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL--------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL---- 96 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 96 (922)
+|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+|+++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4566788888888999999999999999888874 5566778888888888888888888888888876
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 97 ----RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 97 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..++++++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456678888888888888888888888887663 344556777777777777777777777777766
Q ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHH
Q 002431 165 --------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT---------FPDAYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 165 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
.|....++..++.++...|++++|+..++++++..+. ....+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------- 243 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------- 243 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence 4555566666777777777777777777766653221 0011111
Q ss_pred HHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 228 RAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (922)
Q Consensus 228 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 302 (922)
...+...+..+...+.+.++...++++....|....++..+|.++...|++++|.+++++++++.|+
T Consensus 244 --------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 --------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222333444455566667777777777777777778888888888888888888888888877654
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=7.3e-17 Score=167.44 Aligned_cols=229 Identities=7% Similarity=-0.011 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHhhCCC-hhHHHhHHHHHHHcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---CCHHHH
Q 002431 220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERG--QADMAILYYKQAIGCDPRFLEAYNNLGNAL----KDV---GRVDEA 289 (922)
Q Consensus 220 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----~~~---g~~~~A 289 (922)
++|+..+.+++.++|+ ..+|+..+.++...+ ++++++..+++++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4566666666666665 555666666666655 666666666666666777666776666666 555 567777
Q ss_pred HHHHHHHHhhCCCChHHHHhHHHHHHHcCChh--HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCC------HHHHHHHH
Q 002431 290 IQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP--AAASYYKATLAVTTGLSAPFNNLAVIYKQQGN------YADAISCY 361 (922)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~ 361 (922)
+.+++++++.+|.+..+|...+.++...+.++ +++.+++++++.+|.+..+|+..+.++...++ ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 77777777777777777777777777777766 77777777777777777777777777777666 78888888
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC
Q 002431 362 NEVLRIDPLAADGLVNRGNTYKEIGRVTD-AIQDYIRAITIR---PTMAEAHANLASAYKDSGHVEAAIKSYKQALL-LR 436 (922)
Q Consensus 362 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 436 (922)
++++..+|.+..+|+.++.++.+.|+..+ ....++++++++ |.++.++..++.+|.+.|+.++|+++|+++.+ .+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 88888888888888888888888887544 445666666665 77788888888888888888888888888886 68
Q ss_pred CCCHHHHHHHHH
Q 002431 437 PDFPEATCNLLH 448 (922)
Q Consensus 437 p~~~~~~~~l~~ 448 (922)
|-....|.....
T Consensus 290 pir~~yW~~~~~ 301 (306)
T 3dra_A 290 PIRSNFWDYQIS 301 (306)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 887777765544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=2.5e-17 Score=170.59 Aligned_cols=210 Identities=15% Similarity=0.112 Sum_probs=146.8
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---c
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---F 100 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 100 (922)
..+|.++..++.+|..++..|++++|+..|+++++..|++ ..+++.+|.++...|++++|+..|+++++..|+ .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4467788899999999999999999999999999998888 888999999999999999999999999998774 4
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 101 ADAWSNLASAYMR--------KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAW 172 (922)
Q Consensus 101 ~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (922)
..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+ .....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------HHHHHH
Confidence 6788899999998 899999999999999998887655533222111111 111224
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCC----
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLKPT---FPDAYLNLGNVYKAL----------GMPQEAIMCYQRAVQTRPN---- 235 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~---- 235 (922)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55566666666666666666666666555 234566666666554 5566666666666666665
Q ss_pred hhHHHhHHHHHHHcCChH
Q 002431 236 AIAFGNLASTYYERGQAD 253 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~ 253 (922)
..+...++.++...++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 234444555555444443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=2e-17 Score=171.25 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=124.1
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 309 (922)
...++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++..|++ +.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4555555666666666666666666666555555 5555566666666666666666666666555533 335555
Q ss_pred HHHHHHH--------cCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 002431 310 LGNIYME--------WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (922)
Q Consensus 310 la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (922)
+|.++.. .|++++|+..|+++++..|++..+...+..+....++ ....++.+|.+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 5555555 5555555555555555555544433222221111110 11224888999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 382 YKEIGRVTDAIQDYIRAITIRPT---MAEAHANLASAYKDS----------GHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|+++.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 99999999999999999999888 567899999999977 889999999999999999987554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.75 E-value=7.1e-18 Score=199.02 Aligned_cols=202 Identities=13% Similarity=0.019 Sum_probs=140.8
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL--------SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 264 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
..+|++..+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34566665555544 56677777777777777 66777777777777777777777777777777777777
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 336 GLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (922)
Q Consensus 336 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (922)
++..+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777 777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhH-hHHHHHHHHH
Q 002431 416 YKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR-DRMFSEVEGI 469 (922)
Q Consensus 416 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 469 (922)
+.++|++++|++.|+++++++|++..++.++..++...+...++ ...++++.+.
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777776655543333 3344444443
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=5.1e-16 Score=170.18 Aligned_cols=272 Identities=13% Similarity=0.028 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------H
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------A 101 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 101 (922)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34556667777777777777777777776655432 245566666666777777777776666543221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 102 DAWSNLASAYMRKGRLNEAAQCCRQALALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173 (922)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (922)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--- 170 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---
Confidence 234555666666666666666666655442 112233444555555555555555555555544332100
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHH-----HhHHHH
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAF-----GNLAST 245 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~-----~~l~~~ 245 (922)
+....++..++.++...|++++|...+++++...+. ...+ ...+.+
T Consensus 171 --------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 171 --------------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp --------------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 001123344444444444444444444444432111 0000 012233
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYM 315 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 315 (922)
+...|++++|...+++++...+.. ...+..++.++...|++++|...+++++...+.. ..++..++.++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 444555555555555544433321 1234455666666666666666666655442211 124444455555
Q ss_pred HcCChhHHHHHHHHHHhc
Q 002431 316 EWNMLPAAASYYKATLAV 333 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~ 333 (922)
..|++++|...+++++..
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 555555555555555443
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.75 E-value=1.5e-17 Score=175.13 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHhHHHHHHHc-CChhHHHHHHHHHHhcCCCC------
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNIYMEW-NMLPAAASYYKATLAVTTGL------ 337 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------ 337 (922)
.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|... |++++|+.+|+++++..|..
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 355556666666666666666666666554322 23566677777774 77777777777777665543
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH---
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-------GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE--- 407 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 407 (922)
..++..+|.++..+|++++|+..|+++++..|.+.. ++..+|.++..+|++++|+..|+++++++|+...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 345677777777888888888888888777765432 5677788888888888888888888887776543
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 408 --AHANLASAYK--DSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 408 --~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
.+..++..+. ..+++++|+..|++++.++|.+...+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2444556554 45678888888888888777654443
No 96
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.75 E-value=1.3e-18 Score=202.91 Aligned_cols=185 Identities=11% Similarity=0.035 Sum_probs=151.5
Q ss_pred CCcCCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChh----------hHHHHHHHHHHcCC
Q 002431 702 PKRSDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGV 767 (922)
Q Consensus 702 ~~r~~~~l--~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~ 767 (922)
..|+.+|+ +++.+++++++|+ .|+.+.+++++.++.+..|+.+|+|+|+|+. ..+.+++.++++|+
T Consensus 559 ~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL 638 (816)
T 3s28_A 559 ENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKL 638 (816)
T ss_dssp CBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCC
Confidence 35677788 7777888888876 5999999999999988889999999999872 35789999999999
Q ss_pred CCCceEEcCCCC----cHHHHHhcc-CCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcc
Q 002431 768 QPDQIIFTDVAM----KQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841 (922)
Q Consensus 768 ~~~rv~f~~~~~----~~~~~~~~~-~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~ 841 (922)
.++|.|+|.++ ..+...+|. .+|||+.|+.++| |++++|||+||+|||+........-+. -|..+ +
T Consensus 639 -~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~------dg~~G-l 710 (816)
T 3s28_A 639 -NGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV------HGKSG-F 710 (816)
T ss_dssp -BBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCC------BTTTB-E
T ss_pred -CCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHc------cCCcE-E
Confidence 59999999544 477888777 6899999999999 999999999999999755443333221 14445 4
Q ss_pred cc--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 842 IV--NSMKEYEERAVSLA----LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 842 i~--~~~~~~~~~~~~l~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
++ .|++++++++.++. .|++.+.+++++.++... ..|+++.++++++++|+..
T Consensus 711 lv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~--~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 711 HIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIE--EKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH
Confidence 44 38999999997666 899999999999999872 3599999999999999864
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.5e-17 Score=194.38 Aligned_cols=188 Identities=16% Similarity=-0.014 Sum_probs=173.3
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEAL--------RLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45678888887776 88999999999999999 88999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 002431 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (922)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (922)
++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++ +..|+++++.+|++..+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 218 (922)
+...|++++|+..|+++++.+|++..++.+++.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999877665
No 98
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=3.8e-16 Score=171.17 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=202.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECY 70 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 70 (922)
++.+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...+.. ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35678889999999999999999998876542 267889999999999999999999999875432 3457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHH
Q 002431 71 GNMANAWKEKGDIDLAIRYYLVAIELR--------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL-----LVDA 137 (922)
Q Consensus 71 ~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~ 137 (922)
..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+. ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 889999999999999999999999864 334567888999999999999999999999988764 3457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHH
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAIAWS-----NLAGLFMESGDLNRALQYYKEAVKLKPTF----PDAY 206 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~ 206 (922)
+..++.++...|++++|...+++++...+ .....+. .++.++...|++++|...+++++...+.. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 88899999999999999999999887632 2211111 33455778888888888888887765543 2245
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHHhHHHHHHHcCChHHHHHHHHHHHhc
Q 002431 207 LNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (922)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 265 (922)
..++.++...|++++|...+++++...+. ...+..++.++...|++++|...+++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67777888888888888888777654221 235555666666666666666666666543
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=9.6e-17 Score=176.19 Aligned_cols=290 Identities=16% Similarity=0.103 Sum_probs=176.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHh----cCCHHHHH---------HHHHHHHhcCCC-----c
Q 002431 8 QMYKSGSYKQALEHSNSVYERNP---LRTDNLLLLGAIYYQ----LHDYDMCI---------ARNEEALRLEPR-----F 66 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~----~g~~~~A~---------~~~~~al~~~p~-----~ 66 (922)
..+.++++++|..+++++.+..+ .+...++..+...++ .+.+..+. ..++++-..... .
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 45788899999999988754322 233333222222211 11111112 333333221111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELR---P---NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPL------- 133 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------- 133 (922)
...++.+|..+...|++++|+..|+++++.. + ....++..+|.+|...|++++|+..++++++..+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 2356677888888888888888888887752 2 24567788888888888888888888888776432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP------TFAIAWSNLAGLFMESGDLNRALQYYKEAVK-----LKPTF 202 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~ 202 (922)
...++..+|.++...|++++|+..|+++++..+ ....++.++|.+|...|++++|+..++++++ .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 234667778888888888888888887776522 1234666777777777777777777777776 55555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C-hhHHHhHHHHHHHcCC---hHHHHHHHHHHHhcCCCcHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N-AIAFGNLASTYYERGQ---ADMAILYYKQAIGCDPRFLEAY 273 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~ 273 (922)
..++..+|.++...|++++|+..++++++..+ . ...+..++.++...++ +.+|+..+++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 66677777777777777777777777766532 1 2334445555555555 55555555541 1222233445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 274 NNLGNALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~al~ 298 (922)
..+|.++...|++++|..+|+++++
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666666666666655554
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=4.7e-17 Score=158.29 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 002431 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYK 349 (922)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 349 (922)
...+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|...++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..|++++|++.++++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999988888888999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHhcCCCCHH
Q 002431 430 KQALLLRPDFPE 441 (922)
Q Consensus 430 ~~al~~~p~~~~ 441 (922)
+++++..|+++.
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 3as5_A 168 KKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHCCCG
T ss_pred HHHHHcCCCchh
Confidence 999988887653
No 101
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.73 E-value=1.3e-17 Score=182.24 Aligned_cols=320 Identities=11% Similarity=0.041 Sum_probs=196.3
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-----------------
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM----------------- 599 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 599 (922)
+||.+++...+ +.......+.+.+.+.++||.+++..... ....+...+..++.+...
T Consensus 7 mkIl~~~~~~g--G~~~~~~~la~~L~~~G~~V~v~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T 1f0k_A 7 KRLMVMAGGTG--GHVFPGLAVAHHLMAQGWQVRWLGTADRM---EADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRI 81 (364)
T ss_dssp CEEEEECCSSH--HHHHHHHHHHHHHHTTTCEEEEEECTTST---HHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHH
T ss_pred cEEEEEeCCCc--cchhHHHHHHHHHHHcCCEEEEEecCCcc---hhhhccccCCceEEecCCccCcCccHHHHHHHHHH
Confidence 79999985432 33345567888887778999998865421 123344334344433311
Q ss_pred --CHHHHHHHHHhCCCeEEEcCCCcCCCCch----hhhh-cCCCceEEeccccCCCCCC-CcccEEEecCccCCcCccCC
Q 002431 600 --SSDMIAKLINEDKIQILINLNGYTKGARN----EIFA-MQPAPIQVSYMGFPGTTGA-SYIDYLVTDEFVSPLRYAHI 671 (922)
Q Consensus 600 --~~~~~~~~i~~~~~dil~~~~~~~~~~~~----~~~~-~~~apvq~~~~g~~~t~g~-~~~d~~~~d~~~~~~~~~~~ 671 (922)
....+.+.|++.++||+| +++... .+.+ ....|+.++..+.. .+. ...-+..+|.++++....
T Consensus 82 ~~~~~~l~~~l~~~~pDvv~-----~~~~~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~d~v~~~~~~~-- 152 (364)
T 1f0k_A 82 FNAWRQARAIMKAYKPDVVL-----GMGGYVSGPGGLAAWSLGIPVVLHEQNGI--AGLTNKWLAKIATKVMQAFPGA-- 152 (364)
T ss_dssp HHHHHHHHHHHHHHCCSEEE-----ECSSTTHHHHHHHHHHTTCCEEEEECSSS--CCHHHHHHTTTCSEEEESSTTS--
T ss_pred HHHHHHHHHHHHhcCCCEEE-----EeCCcCchHHHHHHHHcCCCEEEEecCCC--CcHHHHHHHHhCCEEEecChhh--
Confidence 013467888889999994 443321 1122 23468877654321 111 000011223333332211
Q ss_pred CccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcE-EEEecCCC--CCCCHHHHHHHHHHHhhCCCeE-EEE
Q 002431 672 YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKF-IFACFNQL--YKMDPEIFNTWCNILRRVPNSA-LWL 747 (922)
Q Consensus 672 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~-~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~~ 747 (922)
+ |+..++.++.... ...+ ...+.+++++++.. ++...++. .|+.+.+++++.++.+ +.+ +++
T Consensus 153 ~-------~~~~~i~n~v~~~--~~~~--~~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i 218 (364)
T 1f0k_A 153 F-------PNAEVVGNPVRTD--VLAL--PLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQ 218 (364)
T ss_dssp S-------SSCEECCCCCCHH--HHTS--CCHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEE
T ss_pred c-------CCceEeCCccchh--hccc--chhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEE
Confidence 1 2222222221111 1111 12345677776654 45555555 4888888899988754 566 567
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchh--
Q 002431 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT-- 825 (922)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~-- 825 (922)
+|.++ .+.+++.+.++|+ ++|.|.|.+ .+...+|+.+|+++.|+ ||+|++|||++|+|||+.+......
T Consensus 219 ~G~~~--~~~l~~~~~~~~~--~~v~~~g~~--~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~~~q 289 (364)
T 1f0k_A 219 SGKGS--QQSVEQAYAEAGQ--PQHKVTEFI--DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKDRQQ 289 (364)
T ss_dssp CCTTC--HHHHHHHHHHTTC--TTSEEESCC--SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTTCHH
T ss_pred cCCch--HHHHHHHHhhcCC--CceEEecch--hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCchhH
Confidence 78776 4688888999998 479999987 56677788999999986 5999999999999999876442211
Q ss_pred hhHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i~-~~--~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
...+..+...|. +.++. .| ++++++++.++ |++.+++++++.++.. ..|+++++++.+++.|+++-..
T Consensus 290 ~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 290 YWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhh
Confidence 111223444566 41333 23 78888888888 9999999999998864 3599999999999999876443
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=1.1e-16 Score=168.45 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhc--C-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQL--H-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVA 93 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (922)
+|.++++++-+.-+.....+ .++.. + ++++|+..|+++ |.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666555322211 12232 2 488888888776 55677788888888888888
Q ss_pred HhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002431 94 IELRPN------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQ-GLVQEAYSCYLE 160 (922)
Q Consensus 94 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 160 (922)
++..+. ...++..+|.+|...|++++|+..|++++++.+.. ..++..+|.++... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 776321 25577788888888888888888888887765432 33556666666664 666666666666
Q ss_pred HHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHH
Q 002431 161 ALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIMCYQ 227 (922)
Q Consensus 161 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 227 (922)
+++..|.. ..++..+|.++...|++++|+..|+++++..|++.. .+..+|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66654432 334555666666666666666666666665554432 34555555555666666666666
Q ss_pred HHHhhCCC
Q 002431 228 RAVQTRPN 235 (922)
Q Consensus 228 ~~~~~~p~ 235 (922)
++++..|+
T Consensus 224 ~al~l~p~ 231 (292)
T 1qqe_A 224 EGQSEDPN 231 (292)
T ss_dssp GGGCC---
T ss_pred HHHhhCCC
Confidence 55555554
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=5.7e-16 Score=170.00 Aligned_cols=229 Identities=18% Similarity=0.167 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCC-------cH
Q 002431 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPR-------FL 270 (922)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~~ 270 (922)
.++.+|..+...|++++|+..|+++++.. ++ ..++..+|.++...|++++|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 34455666666666666666666665542 11 445556666666666666666666666543221 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHhHHHHHHHcCChhHHHHHHHHHHh-----cCCCCch
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS------HPQALTNLGNIYMEWNMLPAAASYYKATLA-----VTTGLSA 339 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~ 339 (922)
.++..+|.++...|++++|++.++++++..+. ...++..+|.+|...|++++|+.+|++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 34555666666666666666666666554211 123455555566666666666666665555 4444455
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRID-----PLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHAN 411 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 411 (922)
++..+|.++...|++++|+.+++++++.. +.....+..++.++...++ +.+|+..+++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 55555555555555555555555555542 2222334444555555555 44555444441 112223344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002431 412 LASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+|.+|...|++++|..+|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=1.2e-17 Score=156.10 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (922)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (922)
+|..+..+|++++|+..+++++..+|+++..++.+|.+|+..|++++|++.|+++++.+|+++.++..+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34455555666666666666666556566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002431 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC-CRQALALNPLLVDAHSNLGNLMKAQGL 150 (922)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~~~~~~~~la~~~~~~g~ 150 (922)
+|+..|+++++.+|+++.++..+|.++.+.|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666666666666554443 356666666666666666655555543
No 105
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=2.2e-16 Score=153.43 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (922)
..|++++|...++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCC
Q 002431 193 KEAVKLKPTF 202 (922)
Q Consensus 193 ~~~l~~~p~~ 202 (922)
+++++..|++
T Consensus 168 ~~~~~~~~~~ 177 (186)
T 3as5_A 168 KKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHcCCCc
Confidence 6665555443
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=1.7e-17 Score=154.93 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=105.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (922)
||.++...|++++|+..+++++..+|+++..++.+|.+|.+.|++++|++.|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 002431 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC-YLEALRIQPTFAIAWSNLAGLFMESGD 184 (922)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 184 (922)
+|+..|+++++.+|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777777665554 467777777777777777776666654
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=2.5e-16 Score=156.38 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN----------------MANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
.+.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555 555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHHHHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL--VQEAYSCYLEALRIQPTFAIAWSN 174 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 174 (922)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ .+.+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 555555555555555555555555555555555555555555555555544432 2233344444332111 1223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 175 LAGLFMESGDLNRALQYYKEAVKLKPT 201 (922)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (922)
+|.++...|++++|+..|+++++++|+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455555555555555555555555554
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=2e-16 Score=157.12 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 002431 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN----------------LASAYMRKGRLNEAAQCCRQALA 129 (922)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~ 129 (922)
++..++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999988888887 66666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q 002431 130 LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD--LNRALQYYKEAVKLKPTFPDAYL 207 (922)
Q Consensus 130 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~ 207 (922)
.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|+ ...+...+.+++...|. ..+++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 6666666666666666666666666666666666666666666666666655443 23344444444322211 22445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
.+|.++...|++++|+..|+++++..|+...
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 5566666666666666666666666665433
No 109
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=6.9e-15 Score=153.14 Aligned_cols=236 Identities=11% Similarity=0.117 Sum_probs=157.7
Q ss_pred hcCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 45 QLHDYD-MCIARNEEALRLEPRFAECYGNMANAWKEKGD----------IDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 45 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
+.|++. +|++.+.+++..+|++..+|+..+.++...+. +++++.+++.++..+|++..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 344443 56677777777777776666666666665554 5667777777777777777777777777766
Q ss_pred cCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------
Q 002431 114 KGR--LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-VQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-------- 182 (922)
Q Consensus 114 ~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 182 (922)
.|+ +++++.+++++++.+|.+..+|...+.+....|. ++++++.+.++++.+|.+..+|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 663 6677777777777777777777777777777666 46777777777777777777777776666655
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCh-hHHHhHHH
Q 002431 183 ------GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL-----------GMPQEAIMCYQRAVQTRPNA-IAFGNLAS 244 (922)
Q Consensus 183 ------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 244 (922)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|+. ..+..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 3466777777777777777777776555555444 34677888888888888772 22222222
Q ss_pred HH---HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 245 TY---YERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280 (922)
Q Consensus 245 ~~---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 280 (922)
+. ...+..++....+.++++++|....-|..+...+
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 21 1346677888888888888888777776665544
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=1.3e-16 Score=167.10 Aligned_cols=223 Identities=22% Similarity=0.256 Sum_probs=153.5
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 002431 10 YKSGSYKQALEHSNSVYER--------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL--------EPRFAECYGNM 73 (922)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 73 (922)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777777652 2556788888999999999999999999988876 34567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL--------NPLLVDA 137 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~ 137 (922)
|.++...|++++|+.+|+++++. +|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888889999998888888877 3556778888888888888888888888888877 5555667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCC
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRI---------QPTFAIAWSNLAGLFMESGDLN------RALQYYKEAVKLKPTF 202 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~------~A~~~~~~~l~~~p~~ 202 (922)
+..+|.++...|++++|+..++++++. .+.....+..++..+...+... ++...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788888888888888888888888765 3334445555555554433322 2222222222222333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (922)
..++..+|.++...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666666666666666666665543
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=1.5e-15 Score=152.91 Aligned_cols=189 Identities=15% Similarity=0.066 Sum_probs=145.7
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHh
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF---LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 309 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 309 (922)
...++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++..|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678888999999999999999999999887775 468899999999999999999999999999988764 7888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---------------
Q 002431 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG--------------- 374 (922)
Q Consensus 310 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------- 374 (922)
+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.+
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 88888764321 01112233444444556666666666666666655433
Q ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 375 --LVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 375 --~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
...+|.++...|++++|+..|+++++..|+++ .++..+|.+|.++|++++|++.++++....|++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 25789999999999999999999999999875 6899999999999999999999999999988764
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=1.4e-15 Score=153.25 Aligned_cols=185 Identities=16% Similarity=0.087 Sum_probs=144.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~ 75 (922)
++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 5678999999999999999999999988866 468899999999999999999999999999998754 7888888
Q ss_pred HHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 76 AWKE------------------KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 76 ~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++.. .|++++|+..|+++++.+|++..++..+..+....+ .....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~ 149 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKY 149 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHH
Confidence 8876 356666666666666666665543322211110000 00122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 002431 138 HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203 (922)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (922)
...+|.++...|++++|+..|+++++..|+++ .++..++.++.+.|++++|++.++++....|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 35788999999999999999999999998875 6789999999999999999999999988887754
No 113
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.68 E-value=1.7e-16 Score=156.69 Aligned_cols=159 Identities=11% Similarity=0.097 Sum_probs=132.7
Q ss_pred CCcCCCCCCCCcEEEEecCC---CCCCCHHHHHHHHHHH--hhCCCeEEEEecCCh--hhHHHHHHHHHHcCCCCCceEE
Q 002431 702 PKRSDYGLPEDKFIFACFNQ---LYKMDPEIFNTWCNIL--RRVPNSALWLLRFPA--AGEMRLRAYAVAQGVQPDQIIF 774 (922)
Q Consensus 702 ~~r~~~~l~~~~~~~~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~~~~~~~--~~~~~l~~~~~~~g~~~~rv~f 774 (922)
..|+++|++++. +++++++ ..|+.+.++++|.++. ++.|+.+|+|+|.++ . .+.+++.+.+.| +|+|
T Consensus 26 ~~r~~~~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~-~~~l~~~~~~~~----~v~~ 99 (200)
T 2bfw_A 26 SLLSKFGMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL-EGWARSLEEKHG----NVKV 99 (200)
T ss_dssp HHHHHTTCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHH-HHHHHHHHHHCT----TEEE
T ss_pred HHHHHcCCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHH-HHHHHHHHHhcC----CEEE
Confidence 368889998664 6666665 5599999999999998 888999999999876 4 678888888876 8999
Q ss_pred -cCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHH
Q 002431 775 -TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYE 850 (922)
Q Consensus 775 -~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~ 850 (922)
.|.++..+...+|+.+|++|.|+.++| |++++|||++|+|||+.....+.. ++ -|-.+ ++.. |+++++
T Consensus 100 ~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~~--~~~~g-~~~~~~~~~~l~ 171 (200)
T 2bfw_A 100 ITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-----II--TNETG-ILVKAGDPGELA 171 (200)
T ss_dssp ECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHH-----HC--CTTTC-EEECTTCHHHHH
T ss_pred EeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHH-----Hc--CCCce-EEecCCCHHHHH
Confidence 999999999999999999999998888 999999999999999765432222 12 25555 5554 999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHhhc
Q 002431 851 ERAVSLAL-DRQKLQALTNKLKSVR 874 (922)
Q Consensus 851 ~~~~~l~~-d~~~~~~~~~~~~~~~ 874 (922)
+++.++.+ |++.+.+++++.++..
T Consensus 172 ~~i~~l~~~~~~~~~~~~~~a~~~~ 196 (200)
T 2bfw_A 172 NAILKALELSRSDLSKFRENCKKRA 196 (200)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999988865
No 114
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.68 E-value=2.5e-16 Score=150.15 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=124.3
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++|+.++|+ .|+.+.++++|.++ +..|+.+|+|+|.|+. .+.+++.+.+.|+ +|.| |.++..+...+|+.+|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~---~v~~-g~~~~~~~~~~~~~ad 76 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKGPD-EKKIKLLAQKLGV---KAEF-GFVNSNELLEILKTCT 76 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCSTT-HHHHHHHHHHHTC---EEEC-CCCCHHHHHHHHTTCS
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCCcc-HHHHHHHHHHcCC---eEEE-eecCHHHHHHHHHhCC
Confidence 566777765 69999999999986 5669999999999876 7899999999988 7999 9999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHHHcCC-Ceee-ecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNA-HTTGTDILWAGL-PMIT-LPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal~~g~-Pvv~-~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+++.|+.++| |++++|||++|+ |||+ ..+.....-+... |. - +...|++++++++.++..|++.+.++++
T Consensus 77 v~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~-----~~-~-~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 149 (166)
T 3qhp_A 77 LYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDE-----RS-L-FEPNNAKDLSAKIDWWLENKLERERMQN 149 (166)
T ss_dssp EEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG-----GG-E-ECTTCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC-----ce-E-EcCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999998888 999999999996 9998 3333222222110 11 1 3346999999999999999999999999
Q ss_pred HHHhhcccCCCCChHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVK 887 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~ 887 (922)
+.++... .|+++.+++
T Consensus 150 ~~~~~~~---~~s~~~~~~ 165 (166)
T 3qhp_A 150 EYAKSAL---NYTLENSVI 165 (166)
T ss_dssp HHHHHHH---HHC------
T ss_pred HHHHHHH---HCChhhhhc
Confidence 9988653 388877765
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=5.8e-16 Score=162.02 Aligned_cols=229 Identities=21% Similarity=0.280 Sum_probs=146.5
Q ss_pred HhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 002431 44 YQLHDYDMCIARNEEALRL--------EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL--------RPNFADAWSNL 107 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 107 (922)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..|+++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777777653 2456778888888888888888888888888876 35556778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHH
Q 002431 108 ASAYMRKGRLNEAAQCCRQALAL--------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI--------QPTFAIA 171 (922)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 171 (922)
|.++...|++++|+..++++++. +|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888888776 3455667777777777778888888777777776 5555666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhH
Q 002431 172 WSNLAGLFMESGDLNRALQYYKEAVKL---------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNL 242 (922)
Q Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 242 (922)
+..+|.++...|++++|+..++++++. .+.....+..++..+...+....+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 232 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA------------------- 232 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-------------------
Confidence 777777777777777777777777654 2223334444444433332222111
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
.+.++...++......|....++..+|.++...|++++|..+++++++.
T Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 233 --------PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222222222222333444556666666666666666666666666653
No 116
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.67 E-value=3.6e-14 Score=147.73 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=133.9
Q ss_pred cCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 80 KGDID-LAIRYYLVAIELRPNFADAWSNLASAYMRKGR----------LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 80 ~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
.|+++ +|+..+.+++..+|++..+|+..+.++...+. +++++.+++.++..+|++..+|...+.++...
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 34433 56666666666666666666666666555444 45666666666666666666666666666666
Q ss_pred CC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------
Q 002431 149 GL--VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD-LNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL--------- 216 (922)
Q Consensus 149 g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------- 216 (922)
++ +++++..+.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 122 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 53 5666666666666666666666666666666665 45666666666666666666666666665554
Q ss_pred -----CChHHHHHHHHHHHhhCCC-hhHHHhHHHHHHHc-----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 217 -----GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER-----------GQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (922)
Q Consensus 217 -----g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 279 (922)
+.++++++++.+++..+|+ ..+|+.+..++... +.++++++.++++++..|++...+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 3355666666666666665 44554444444333 235566666666666666654333333322
Q ss_pred HH---HcCCHHHHHHHHHHHHhhCCCChHHHHhHHH
Q 002431 280 LK---DVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312 (922)
Q Consensus 280 ~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (922)
.. ..+..++....+.++++++|....-|..+..
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 21 2345556666666666666655555444443
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=6.9e-16 Score=138.92 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=103.7
Q ss_pred HHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 002431 330 TLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (922)
Q Consensus 330 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (922)
+..++|+.+..+..+|..+.+.|++++|++.|+++++++|.++.++..+|.++..+|++++|+..|+++++++|++..++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34567777788888888888889999999999999998999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
+.+|.+|..+|++++|++.|+++++++|+++.+..++..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999888887776543
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.66 E-value=1.4e-14 Score=151.18 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
++..+..+....+..++|++.+++++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333344444455567888888888888888888888888888777 48888888888888888888888888888777
Q ss_pred c-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 002431 114 K-G-RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ--------EAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (922)
Q Consensus 114 ~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (922)
. + ++++++++++++++.+|.+..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 6 6 7788888888888888888888888887777777766 7888888888888888888888888887777
Q ss_pred C-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 002431 184 D-------LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMP 219 (922)
Q Consensus 184 ~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 219 (922)
. ++++++++++++..+|++..+|+.+..++...|+.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 6 67888888888888888888888877777776654
No 119
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.66 E-value=2.2e-17 Score=181.45 Aligned_cols=153 Identities=8% Similarity=-0.071 Sum_probs=113.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCC---eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC
Q 002431 722 LYKMDPEIFNTWCNILRRVPN---SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL 798 (922)
Q Consensus 722 ~~K~~~~~~~~~~~il~~~p~---~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~ 798 (922)
..|+.+.++++++.+.++.|+ .+|+++|+|+. . .++|+ .++|+|+|.++.++...+|+.+|||+.||.
T Consensus 253 ~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~-~-------~~l~~-~~~v~f~G~~~~~~l~~~~~~adv~v~pS~ 323 (413)
T 2x0d_A 253 KRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHK-D-------IALGK-GIHLNSLGKLTLEDYADLLKRSSIGISLMI 323 (413)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCC-C-------EEEET-TEEEEEEESCCHHHHHHHHHHCCEEECCCS
T ss_pred hccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCch-h-------hhcCC-cCcEEEcCCCCHHHHHHHHHhCCEEEEecC
Confidence 458999999999999888886 79999998865 2 35688 589999999999999999999999999998
Q ss_pred CCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002431 799 CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVRLT 876 (922)
Q Consensus 799 ~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~ 876 (922)
++| |++.+|||+||+|||+..|.. .+-+. -|.++.++. .|++++++++.+|++|++++++ +.++..
T Consensus 324 ~E~~g~~~lEAmA~G~PVV~~~~g~-~e~v~------~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~-- 391 (413)
T 2x0d_A 324 SPHPSYPPLEMAHFGLRVITNKYEN-KDLSN------WHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESS-- 391 (413)
T ss_dssp SSSCCSHHHHHHHTTCEEEEECBTT-BCGGG------TBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCB--
T ss_pred CCCCCcHHHHHHhCCCcEEEeCCCc-chhhh------cCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHH--
Confidence 888 999999999999999855432 22221 144441232 5899999999999999887776 344432
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 002431 877 CPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 877 ~~~~~~~~~~~~~e~~y~~~~ 897 (922)
..|+++..+++ .+.|++++
T Consensus 392 -~~~~W~~~~~~-~~~~~~l~ 410 (413)
T 2x0d_A 392 -NMMFYINEFNE-FSFIKEIE 410 (413)
T ss_dssp -SCGGGCCCC----TTHHHHH
T ss_pred -HhCCHHHHHHH-HHHHHHHH
Confidence 35898888777 55666654
No 120
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.65 E-value=7.7e-17 Score=177.44 Aligned_cols=333 Identities=13% Similarity=0.071 Sum_probs=197.1
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCC-eEEEEEecCCCCChHHHHHHHhccCce-EECCCC----C--------HH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEHF-VDVSAM----S--------SD 602 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~--------~~ 602 (922)
|||.++++. .+-...+.++++.+.+.. +++.+...+.... ...+.++.....+ .++.-. + ..
T Consensus 1 mkIl~v~~~---~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 1vgv_A 1 MKVLTVFGT---RPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILE 76 (384)
T ss_dssp CEEEEEECS---HHHHHHHHHHHHHHHHSTTCEEEEEECCSSGG-GGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHH
T ss_pred CeEEEEecc---cHHHHHHHHHHHHHHhCCCCceEEEEcCCCHH-HHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHH
Confidence 578888753 122234567777776554 4665555443322 1122233322222 333321 1 24
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCC-ch----hhhh-cCCCceEEeccccCCCC---CCCc-cc----EEEecCccCCcCc
Q 002431 603 MIAKLINEDKIQILINLNGYTKGA-RN----EIFA-MQPAPIQVSYMGFPGTT---GASY-ID----YLVTDEFVSPLRY 668 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~-~~----~~~~-~~~apvq~~~~g~~~t~---g~~~-~d----~~~~d~~~~~~~~ 668 (922)
.+.+.+++.++||+ |+++. .. .+.+ .+..|+..+..|..... ..+. +- +..+|.+++++..
T Consensus 77 ~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 151 (384)
T 1vgv_A 77 GLKPILAEFKPDVV-----LVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTET 151 (384)
T ss_dssp HHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHH
T ss_pred HHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHHCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHH
Confidence 57888999999999 55543 11 1222 23468766554432100 0000 00 1124555555443
Q ss_pred cC-C------CccceeecCCccccCCCccccccCCCC---CCCCCcCCCC-CCC-CcEEEEecCCCC---CCCHHHHHHH
Q 002431 669 AH-I------YSEKLVHVPHCYFVNDYKQKNMDVLDP---NCQPKRSDYG-LPE-DKFIFACFNQLY---KMDPEIFNTW 733 (922)
Q Consensus 669 ~~-~------~~e~~~~lp~~~~~~~~~~~~~~~~~~---~~~~~r~~~~-l~~-~~~~~~~~~~~~---K~~~~~~~~~ 733 (922)
.. . -.+++..+|+........ .+..... .....|.++| +++ +.+++++++|+. |+.+.++++|
T Consensus 152 ~~~~l~~~g~~~~~i~vi~n~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~ 229 (384)
T 1vgv_A 152 SRQNLLRENVADSRIFITGNTVIDALLW--VRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHAL 229 (384)
T ss_dssp HHHHHHHTTCCGGGEEECCCHHHHHHHH--HHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhEEEeCChHHHHHHh--hhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHH
Confidence 11 1 123444444432110000 0000000 0012467788 854 456788888754 8889999999
Q ss_pred HHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g 812 (922)
.++.++.|+.+|+++ |.++...+.+++.+ +. .++|+|+|.++..+...+|+.+|+|+.|+ |++ ++|||++|
T Consensus 230 ~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~S---g~~-~lEA~a~G 301 (384)
T 1vgv_A 230 ADIATTHQDIQIVYPVHLNPNVREPVNRIL---GH-VKNVILIDPQEYLPFVWLMNHAWLILTDS---GGI-QEEAPSLG 301 (384)
T ss_dssp HHHHHHCTTEEEEEECCBCHHHHHHHHHHH---TT-CTTEEEECCCCHHHHHHHHHHCSEEEESS---STG-GGTGGGGT
T ss_pred HHHHhhCCCeEEEEEcCCCHHHHHHHHHHh---hc-CCCEEEeCCCCHHHHHHHHHhCcEEEECC---cch-HHHHHHcC
Confidence 999998999998875 44442245555543 33 36899999888888999999999999888 444 89999999
Q ss_pred CCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 813 LPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 813 ~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+|||+.+. ..... ++ ..| ...++..|++++++++.+++.|++.+++++++.++. ...|+++++++.+++
T Consensus 302 ~PvI~~~~~~~~~e-----~v-~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 371 (384)
T 1vgv_A 302 KPVLVMRDTTERPE-----AV-TAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPY---GDGQACSRILEALKN 371 (384)
T ss_dssp CCEEEESSCCSCHH-----HH-HHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTT---CCSCHHHHHHHHHHH
T ss_pred CCEEEccCCCCcch-----hh-hCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCC---cCCCHHHHHHHHHHH
Confidence 99998753 22222 22 226 452444599999999999999999999988776553 345899999999988
Q ss_pred HHHHHHH
Q 002431 892 SYFKMWS 898 (922)
Q Consensus 892 ~y~~~~~ 898 (922)
.|.+...
T Consensus 372 ~~~~~~~ 378 (384)
T 1vgv_A 372 NRISLGS 378 (384)
T ss_dssp TCCCC--
T ss_pred HHHhhcc
Confidence 8766544
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.65 E-value=2.8e-14 Score=148.98 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=164.7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-CHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEK-G-DIDLAI 87 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~ 87 (922)
..+..++|++.+++++..+|++..+|+.++.++...| .++++++.+++++..+|++..+|...+.++... + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445578999999999999999999999999999999 599999999999999999999999999999998 8 999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HH
Q 002431 88 RYYLVAIELRPNFADAWSNLASAYMRKGRLN--------EAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-------VQ 152 (922)
Q Consensus 88 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------~~ 152 (922)
+++.++++.+|++..+|...+.++.+.|.++ ++++.++++++.+|.+..+|...+.++...+. ++
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9999999999999999999999999988887 99999999999999999999999999999987 79
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
++++.+++++..+|++..+|+.+..++...|+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988887764
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=7.1e-16 Score=148.65 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHH-HH
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY-KQ 350 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~ 350 (922)
.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+..++.+. ..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555555555555 444333333221 12
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKS 428 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~ 428 (922)
.++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2233346677777777777777777777777777777777777777777777654 45777777777777777777777
Q ss_pred HHHHHh
Q 002431 429 YKQALL 434 (922)
Q Consensus 429 ~~~al~ 434 (922)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=3e-15 Score=134.71 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=78.4
Q ss_pred hhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
..+|+.++.+..+|..+++.|+|++|++.|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666666666666655544
No 124
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.64 E-value=8.6e-16 Score=168.42 Aligned_cols=326 Identities=11% Similarity=0.077 Sum_probs=193.1
Q ss_pred cccceeeeecCCCCCChhHhhhhHHhhcCCCC-C-eEEEEEecCCCCChHHHHHHHhccCce-EECC----CCC------
Q 002431 534 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-N-VEVFCYALSPNDGTEWRQRTQSEAEHF-VDVS----AMS------ 600 (922)
Q Consensus 534 ~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~------ 600 (922)
.++|||.++++.. +......++++.+.+. + +++++...+... +...+.++...... +.+. ..+
T Consensus 6 ~~~mkIl~v~~~~---~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (375)
T 3beo_A 6 TERLKVMTIFGTR---PEAIKMAPLVLELQKHPEKIESIVTVTAQHR-QMLDQVLSIFGITPDFDLNIMKDRQTLIDITT 81 (375)
T ss_dssp SSCEEEEEEECSH---HHHHHHHHHHHHHTTCTTTEEEEEEECCSSS-HHHHHHHHHHTCCCSEECCCCCTTCCHHHHHH
T ss_pred CcCceEEEEecCc---HHHHHHHHHHHHHHhCCCCCCeEEEEcCCCH-HHHHHHHHHcCCCCccccccCCCcccHHHHHH
Confidence 3468999998543 2222334555555443 3 888776655432 21222222222211 2221 122
Q ss_pred --HHHHHHHHHhCCCeEEEcCCCcCCCCc-hhhh----h-cCCCceEEeccccCCCC---CCCc--ccE---EEecCccC
Q 002431 601 --SDMIAKLINEDKIQILINLNGYTKGAR-NEIF----A-MQPAPIQVSYMGFPGTT---GASY--IDY---LVTDEFVS 664 (922)
Q Consensus 601 --~~~~~~~i~~~~~dil~~~~~~~~~~~-~~~~----~-~~~apvq~~~~g~~~t~---g~~~--~d~---~~~d~~~~ 664 (922)
...+.+.+++.++||+ |+++.. ..+. + ....|+..+..|..... ..+. +.. ..+|.+++
T Consensus 82 ~~~~~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 156 (375)
T 3beo_A 82 RGLEGLDKVMKEAKPDIV-----LVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFS 156 (375)
T ss_dssp HHHHHHHHHHHHHCCSEE-----EEETTSHHHHHHHHHHHHTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHhCCCEE-----EEeCCchHHHHHHHHHHHHCCCEEEEecccccccccCCChhHhhhhHHhhhhheeeC
Confidence 1247888899999999 555542 2222 2 23468765543321100 0110 000 12566666
Q ss_pred CcCccC-------CCccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCCC---CCCHHHHHHH
Q 002431 665 PLRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQLY---KMDPEIFNTW 733 (922)
Q Consensus 665 ~~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~~---K~~~~~~~~~ 733 (922)
++.... ...+++..+|+..+.. ..+.... .....|.++ +++.+++++++|.. |+.+.++++|
T Consensus 157 ~s~~~~~~~~~~g~~~~~i~vi~n~~~d~-----~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~ 229 (375)
T 3beo_A 157 PTAKSATNLQKENKDESRIFITGNTAIDA-----LKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAI 229 (375)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCCHHHHH-----HHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcccEEEECChhHhh-----hhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHH
Confidence 654321 1123455555432110 0000000 112234444 45567788888764 8899999999
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g 812 (922)
.++.++.|+.++++ |.|+. ..+++.++++ +. .++|+|+|.++..+...+|+.+|+|+.|+ |.+++|||++|
T Consensus 230 ~~l~~~~~~~~~i~-~~g~~--~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~s----g~~~lEA~a~G 301 (375)
T 3beo_A 230 KRLVDKHEDVQVVY-PVHMN--PVVRETANDILGD-YGRIHLIEPLDVIDFHNVAARSYLMLTDS----GGVQEEAPSLG 301 (375)
T ss_dssp HHHHHHCTTEEEEE-ECCSC--HHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTCSEEEECC----HHHHHHHHHHT
T ss_pred HHHHhhCCCeEEEE-eCCCC--HHHHHHHHHHhhc-cCCEEEeCCCCHHHHHHHHHhCcEEEECC----CChHHHHHhcC
Confidence 99988899998655 55543 2344444443 43 37999999988889999999999999887 55599999999
Q ss_pred CCeeeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHH
Q 002431 813 LPMITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 813 ~Pvv~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 891 (922)
+|||+... ..... ++ .-| .+.++..|++++++++.++.+|++.+++++++.++.. ..|+++++++.+++
T Consensus 302 ~Pvi~~~~~~~~~e-----~v-~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~ 371 (375)
T 3beo_A 302 VPVLVLRDTTERPE-----GI-EAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYG---DGRASERIVEAILK 371 (375)
T ss_dssp CCEEECSSCCSCHH-----HH-HTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTC---CSCHHHHHHHHHHH
T ss_pred CCEEEecCCCCCce-----ee-cCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCC---CCcHHHHHHHHHHH
Confidence 99997732 21221 22 235 4524446999999999999999999998887765543 35899999988887
Q ss_pred HH
Q 002431 892 SY 893 (922)
Q Consensus 892 ~y 893 (922)
.+
T Consensus 372 ~~ 373 (375)
T 3beo_A 372 HF 373 (375)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 125
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.64 E-value=3.9e-16 Score=150.28 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=121.2
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHH--HcCCCCCceEEcCCCCc
Q 002431 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV--AQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~--~~g~~~~rv~f~~~~~~ 780 (922)
..+.++++.++|+.++++ .|+.+.++++|.++ |+.+|+++|.++. .+.+++.+. +.|+ .++|.|.|.++.
T Consensus 15 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~-~~~l~~~~~~~~~~l-~~~v~~~g~~~~ 88 (177)
T 2f9f_A 15 SKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK-GDHAERYARKIMKIA-PDNVKFLGSVSE 88 (177)
T ss_dssp TTCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT-TSTHHHHHHHHHHHS-CTTEEEEESCCH
T ss_pred cccccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc-HHHHHHHHHhhhccc-CCcEEEeCCCCH
Confidence 345567777777777765 59999999998875 8899999998876 567888888 8899 589999999999
Q ss_pred HHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 781 QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
.+...+|+.+|+++.|+..+| |++++|||++|+|||+.+.......+ . -|..+.++..|.+++++++.++.+|
T Consensus 89 ~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i-----~-~~~~g~~~~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 89 EELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV-----I-NEKTGYLVNADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC-----C-BTTTEEEECSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh-----c-CCCccEEeCCCHHHHHHHHHHHHhC
Confidence 999999999999999987777 99999999999999976543222211 1 1334413358999999999999999
Q ss_pred HHH-HHHHHHHHH
Q 002431 860 RQK-LQALTNKLK 871 (922)
Q Consensus 860 ~~~-~~~~~~~~~ 871 (922)
++. ++++++..+
T Consensus 163 ~~~~~~~~~~~a~ 175 (177)
T 2f9f_A 163 PDKFKKDCFRRAK 175 (177)
T ss_dssp TTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 886 555555443
No 126
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=5.1e-15 Score=154.99 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=149.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 345 (922)
.|.+.+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 47888888899999999999999999999999999999999999999999999999999999998888887666666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHhcCCHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVE 423 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 423 (922)
..+...++.++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 778888888889999999999999999999999999999999999999999999999887 888999999999999999
Q ss_pred HHHHHHHHHHh
Q 002431 424 AAIKSYKQALL 434 (922)
Q Consensus 424 ~A~~~~~~al~ 434 (922)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999988875
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=2e-15 Score=145.46 Aligned_cols=165 Identities=13% Similarity=0.027 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666655555 44443333322
Q ss_pred HH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHH
Q 002431 111 YM-RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 111 ~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 187 (922)
.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11 11222234555555555555555555555555555555555555555555555443 3345555555555555555
Q ss_pred HHHHHHHHH
Q 002431 188 ALQYYKEAV 196 (922)
Q Consensus 188 A~~~~~~~l 196 (922)
|+..|++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 128
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=1.5e-14 Score=151.47 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=102.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666655544455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF--AIAWSNLAGLFMESGDLNR 187 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 187 (922)
.+...++.++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 55555666666666666666666666666666666666666666666666666666655 5556666666666666666
Q ss_pred HHHHHHHHH
Q 002431 188 ALQYYKEAV 196 (922)
Q Consensus 188 A~~~~~~~l 196 (922)
|...|++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555554
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=1.5e-14 Score=167.98 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 91 (922)
.|++++|+..|+++++.+|.+..+++.+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCc
Q 002431 92 VAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---GLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 92 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 168 (922)
++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.++... |++++|...++++++.+|.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 666666666666666666666666666666666666666666666666666666666 66666666666666666655
Q ss_pred HHHHHH
Q 002431 169 AIAWSN 174 (922)
Q Consensus 169 ~~~~~~ 174 (922)
...+..
T Consensus 162 ~~~~~~ 167 (568)
T 2vsy_A 162 VEPFAF 167 (568)
T ss_dssp SCHHHH
T ss_pred cChHHH
Confidence 544443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=8.4e-16 Score=142.42 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..+++++..+|++..+++.+|.++.+.|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (922)
++.+++++|.+|..+|++++|+..|++++++.|+++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=1.7e-14 Score=152.98 Aligned_cols=195 Identities=18% Similarity=0.142 Sum_probs=117.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 11 KSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQ-LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRY 89 (922)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 89 (922)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ +.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4678899999999888765532 122 57888888888775 5677888999999999
Q ss_pred HHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 002431 90 YLVAIELRPN------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--L----VDAHSNLGNLMKAQGLVQEAYSC 157 (922)
Q Consensus 90 ~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 157 (922)
|.++++..+. ...++..+|.+|...|++++|+..|++++++.+. + ..++..+|.++.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9888876432 2446777777777778888888877777765321 1 2345556666655 666666666
Q ss_pred HHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 002431 158 YLEALRIQPTF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP------DAYLNLGNVYKALGMPQEAIMC 225 (922)
Q Consensus 158 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~ 225 (922)
|+++++..+.. ..++..+|.++...|++++|+..|++++++.+.+. ..+..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66665543321 23444455555555555555555555544332211 1333344444444444444444
Q ss_pred HHHHH
Q 002431 226 YQRAV 230 (922)
Q Consensus 226 ~~~~~ 230 (922)
|++++
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=5.1e-15 Score=149.37 Aligned_cols=203 Identities=13% Similarity=0.043 Sum_probs=176.5
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCChH--------
Q 002431 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL-------GNALKDVGRVDEAIQCYNQCLSLQPSHPQ-------- 305 (922)
Q Consensus 241 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 305 (922)
..+..+ ..+++.+|.+.|.+++..+|+..++|..+ +.++...++..+++..+++.+++.|....
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334444 57999999999999999999999999999 89999999999999999999997776443
Q ss_pred -------------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 002431 306 -------------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA- 371 (922)
Q Consensus 306 -------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 371 (922)
+...++.++...|++++|.+.|+.+....|.+. ..+.++.++.+.+++++|+..|+++.+..+..
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 344488899999999999999999999888888 99999999999999999999999887653221
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 372 -ADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (922)
Q Consensus 372 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (922)
..+++.+|.++..+|++++|+..|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+ +.+...|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4589999999999999999999999998654 55 6789999999999999999999999999999999 7766555
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.57 E-value=4.9e-12 Score=142.15 Aligned_cols=209 Identities=10% Similarity=-0.029 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHh
Q 002431 253 DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLA 332 (922)
Q Consensus 253 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 332 (922)
+.....|++++...|.....|...+..+...|+.++|..+|++++.. |.+...+...+... +.++....+.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence 34566777777777777777777777777777778888888887777 77665555443331 11111111111110
Q ss_pred ----------cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhh
Q 002431 333 ----------VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAITI 401 (922)
Q Consensus 333 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 401 (922)
..+....+|...+..+.+.++.+.|..+|+++ +..+.....+...+......+ +.+.|..+|+.+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 01112355777788877888899999999999 443345667776676666666 599999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 471 (922)
.|+.+..+...+....+.|+.+.|..+|+++ +.....|...+..-...|+.+.+..++++..+.++
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8988888888888888899999999999997 34566777777666777887777777776666443
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=2.8e-14 Score=151.18 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=50.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHH
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEA 408 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 408 (922)
+.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|++++++.|++ ..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3444444444 55555555555554443321 3345555555555555555555555555543221 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
+..++.++...|++++|+..|++++ ++|+.
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 5555556666666666666666666 55543
No 135
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.57 E-value=1.6e-14 Score=158.19 Aligned_cols=320 Identities=9% Similarity=0.030 Sum_probs=186.4
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccCce-EECCC----CC--------H
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAEHF-VDVSA----MS--------S 601 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~--------~ 601 (922)
.+||.++++.. +......++++.+.+. ++|+++...+... ....+.++.....+ +++.- .+ .
T Consensus 5 mmkIl~v~~~~---~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (376)
T 1v4v_A 5 MKRVVLAFGTR---PEATKMAPVYLALRGIPGLKPLVLLTGQHR-EQLRQALSLFGIQEDRNLDVMQERQALPDLAARIL 80 (376)
T ss_dssp CEEEEEEECSH---HHHHHHHHHHHHHHTSTTEEEEEEECSSCH-HHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHH
T ss_pred ceEEEEEEecc---HHHHHHHHHHHHHHhCCCCceEEEEcCCcH-HHHHHHHHHcCCCcccccccCCCCccHHHHHHHHH
Confidence 37899998642 2112345667777665 6888777655321 21233344433222 23321 11 1
Q ss_pred HHHHHHHHhCCCeEEEcCCCcCCCCch-----hhhh-cCCCceEEeccccCCCCCC-----C--ccc---EEEecCccCC
Q 002431 602 DMIAKLINEDKIQILINLNGYTKGARN-----EIFA-MQPAPIQVSYMGFPGTTGA-----S--YID---YLVTDEFVSP 665 (922)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~-----~~~~-~~~apvq~~~~g~~~t~g~-----~--~~d---~~~~d~~~~~ 665 (922)
..+.+.+++.++||+ |+++... .+.+ ....|+..+..+. . ++. + .+. +..+|.++++
T Consensus 81 ~~l~~~l~~~~pDvv-----~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (376)
T 1v4v_A 81 PQAARALKEMGADYV-----LVHGDTLTTFAVAWAAFLEGIPVGHVEAGL-R-SGNLKEPFPEEANRRLTDVLTDLDFAP 153 (376)
T ss_dssp HHHHHHHHHTTCSEE-----EEESSCHHHHHHHHHHHHTTCCEEEETCCC-C-CSCTTSSTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHcCCCEE-----EEeCChHHHHHHHHHHHHhCCCEEEEeCCC-c-cccccCCCchHHHHHHHHHHhceeeCC
Confidence 357788899999999 5554321 1222 2345874332222 1 111 0 000 1234555555
Q ss_pred cCccC-------CCccceeecCCccccCCCccccccCCCCCCCCCcCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002431 666 LRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI 736 (922)
Q Consensus 666 ~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~K~~~~~~~~~~~i 736 (922)
+.... .-.+++..+|+..+... .+ .+.....|.+++ ++.+++++++|. .|+.+.+++++.++
T Consensus 154 s~~~~~~l~~~g~~~~ki~vi~n~~~d~~-----~~--~~~~~~~~~~~~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l 224 (376)
T 1v4v_A 154 TPLAKANLLKEGKREEGILVTGQTGVDAV-----LL--AAKLGRLPEGLP--EGPYVTVTMHRRENWPLLSDLAQALKRV 224 (376)
T ss_dssp SHHHHHHHHTTTCCGGGEEECCCHHHHHH-----HH--HHHHCCCCTTCC--SSCEEEECCCCGGGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcceEEEECCchHHHH-----hh--hhhhhHHHHhcC--CCCEEEEEeCcccchHHHHHHHHHHHHH
Confidence 44311 11234444444221100 00 000112344443 455777778875 36899999999999
Q ss_pred HhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 737 LRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 737 l~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
.++.|+.+++++ |+++..++.+++.+. . .++|+|+|.++..+...+|+.+|+|+.++ ||+ ++|||++|+||
T Consensus 225 ~~~~~~~~lv~~~g~~~~~~~~l~~~~~---~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S---~g~-~lEA~a~G~Pv 296 (376)
T 1v4v_A 225 AEAFPHLTFVYPVHLNPVVREAVFPVLK---G-VRNFVLLDPLEYGSMAALMRASLLLVTDS---GGL-QEEGAALGVPV 296 (376)
T ss_dssp HHHCTTSEEEEECCSCHHHHHHHHHHHT---T-CTTEEEECCCCHHHHHHHHHTEEEEEESC---HHH-HHHHHHTTCCE
T ss_pred HhhCCCeEEEEECCCCHHHHHHHHHHhc---c-CCCEEEECCCCHHHHHHHHHhCcEEEECC---cCH-HHHHHHcCCCE
Confidence 888999998885 666533566666542 2 36899998888778899999999999887 555 78999999999
Q ss_pred eeecC-CcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 816 ITLPL-EKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 816 v~~~~-~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|+.+. ..... ++ ..|. ..++..|++++++++.++++|++.++++++. ...|.....++++.+.+.
T Consensus 297 I~~~~~~~~~~-----~~-~~g~-g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~-------~~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 297 VVLRNVTERPE-----GL-KAGI-LKLAGTDPEGVYRVVKGLLENPEELSRMRKA-------KNPYGDGKAGLMVARGVA 362 (376)
T ss_dssp EECSSSCSCHH-----HH-HHTS-EEECCSCHHHHHHHHHHHHTCHHHHHHHHHS-------CCSSCCSCHHHHHHHHHH
T ss_pred EeccCCCcchh-----hh-cCCc-eEECCCCHHHHHHHHHHHHhChHhhhhhccc-------CCCCCCChHHHHHHHHHH
Confidence 97532 11222 12 1242 3144379999999999999999988888752 123555556666666665
Q ss_pred HHH
Q 002431 895 KMW 897 (922)
Q Consensus 895 ~~~ 897 (922)
+..
T Consensus 363 ~~~ 365 (376)
T 1v4v_A 363 WRL 365 (376)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.56 E-value=8.4e-14 Score=138.42 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC----ChhHHHHHHHH
Q 002431 254 MAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN----MLPAAASYYKA 329 (922)
Q Consensus 254 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~ 329 (922)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 466777777654 56778888888888888888888888888765 567888888888887 6 78888888888
Q ss_pred HHhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Q 002431 330 TLAVTTGLSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKE----IGRVTDAIQDYIRAI 399 (922)
Q Consensus 330 a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 399 (922)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 854 4678888888888887 8899999999999998877 358899999999998 889999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 002431 400 TIRPTMAEAHANLASAYKDS-G-----HVEAAIKSYKQALLLRP 437 (922)
Q Consensus 400 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p 437 (922)
+. +.++.+++.||.+|... | ++++|+.+|+++.+.+.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66677899999999864 3 89999999999988764
No 137
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.56 E-value=9.2e-15 Score=165.44 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=123.5
Q ss_pred CcCCCCCC--CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhh-HHHHHHHHHHcCCCCCceEEcCC
Q 002431 703 KRSDYGLP--EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
++.++||+ ++.++|++++|+. |+.+.+++++.++++. +..|+|+|.|+.. ...++.... +. .++|.|.+.
T Consensus 315 l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~--~~-~~~v~~~~~ 389 (536)
T 3vue_A 315 LQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEE--KY-PGKVRAVVK 389 (536)
T ss_dssp HHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHH--HS-TTTEEEECS
T ss_pred HHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHh--hc-CCceEEEEe
Confidence 34566775 4668999999874 9999999999999765 4567777776542 234444444 44 478999998
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc--CCCCcc----------cc-
Q 002431 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT--GLGEEM----------IV- 843 (922)
Q Consensus 778 ~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~--g~~~~~----------i~- 843 (922)
.+..+...+|+.+||||.||.+|| |++.+|||++|+|||+ +++|+ +-..+ |.++ + +.
T Consensus 390 ~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~gG-~~e~V~dg~~G-~~~~~~~~~g~l~~ 460 (536)
T 3vue_A 390 FNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTGG-LVDTVIEGKTG-FHMGRLSVDCKVVE 460 (536)
T ss_dssp CCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCTH-HHHHCCBTTTE-EECCCCCSCTTCCC
T ss_pred ccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCCC-chheeeCCCCc-cccccCCCceeEEC
Confidence 888888888999999999999999 9999999999999995 45551 11111 2222 1 11
Q ss_pred -CCHHHHHHHHHH---HhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHH
Q 002431 844 -NSMKEYEERAVS---LALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMW 897 (922)
Q Consensus 844 -~~~~~~~~~~~~---l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~ 897 (922)
.|++++++++.+ +..++.++ +++++..+ ..||+++.|++.+++|+++.
T Consensus 461 ~~d~~~la~ai~ral~~~~~~~~~-~~~~~am~-----~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 461 PSDVKKVAATLKRAIKVVGTPAYE-EMVRNCMN-----QDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHH-HHHHHHHH-----SCCSSHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhcCcHHHH-HHHHHHHH-----hcCCHHHHHHHHHHHHHHhh
Confidence 256777766644 44555543 34333222 24999999999999999873
No 138
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=2.9e-13 Score=138.43 Aligned_cols=245 Identities=13% Similarity=0.033 Sum_probs=159.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHH
Q 002431 179 FMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 257 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 257 (922)
.+-.|+|..++.-.. +..|.+ ......+.++|..+|++.... ...|...+...++..+ . ++ |+.
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~~~a~~~la~~~-~-~~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKLGKVLDLYVQFL-D-TK---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTTHHHHHHHHHHH-T-TT---CCH
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------CCCHHHHHHHHHHHHh-c-cc---HHH
Confidence 344566666665322 222222 224444556666666655311 1112222333333332 1 22 666
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCC
Q 002431 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (922)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 335 (922)
.+++.+...+....++..+|.++...|++++|++.+.+.+..+| .+.+++..++.++.+.|+.+.|.+.++++.+.+|
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 67766655444455566777777777777777777777777665 6667777777777777777777777777777766
Q ss_pred C----CchhhhhH--HHHHHHcC--CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q 002431 336 G----LSAPFNNL--AVIYKQQG--NYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITI---- 401 (922)
Q Consensus 336 ~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 401 (922)
+ +..+...+ +.+....| ++.+|..+|+++.+..|+ ....+++ ++.++|++++|...++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 2 22233333 33344445 888888888888877776 2334444 888899999999999877776
Q ss_pred ------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 402 ------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 402 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
+|+++.++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 48889999888888888887 88999999999999988664
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.56 E-value=1.3e-14 Score=134.41 Aligned_cols=113 Identities=16% Similarity=0.081 Sum_probs=66.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002431 56 NEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 56 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
++++++.+|++..+++.+|.++.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 002431 136 DAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (922)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (922)
.+++.+|.++...|++++|+..|+++++..|+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 555555555555555555555555555555554
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.4e-14 Score=146.08 Aligned_cols=203 Identities=13% Similarity=-0.013 Sum_probs=116.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCc----------
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLL-------GAIYYQLHDYDMCIARNEEALRLEPRF---------- 66 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~---------- 66 (922)
..|..+ ..+++.+|.+.|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 334443 45666666666666666666666666666 566666666666666666666655432
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 002431 67 -----------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL- 134 (922)
Q Consensus 67 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 134 (922)
......++.++...|++++|.+.|..++...|++. +.+.++.++.+.+++++|+..|+++.+..++.
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 12333455566666666666666666665556555 66666666666666666666665554332111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002431 135 -VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNL 209 (922)
Q Consensus 135 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 209 (922)
..+++.+|.++...|++++|+..|++++... |. ...+++.+|.++.++|+.++|...|++++..+|+ ..+...|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 2355666666666666666666666665332 33 4445566666666666666666666666666665 4444433
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=4.8e-16 Score=166.66 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC---------------chhhhhHHHHH
Q 002431 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIY 348 (922)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~ 348 (922)
+++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+ ..++.++|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555555555555555555554 35666677777
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHH-HH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAA-IK 427 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~ 427 (922)
.++|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ..
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777776666 44
Q ss_pred HHHHHHh
Q 002431 428 SYKQALL 434 (922)
Q Consensus 428 ~~~~al~ 434 (922)
.|++++.
T Consensus 287 ~~~~~~~ 293 (336)
T 1p5q_A 287 LYANMFE 293 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 142
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.56 E-value=3.2e-15 Score=162.25 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=112.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCC-------CceEEcCCCCcHHHHHhccCCcEE
Q 002431 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQP-------DQIIFTDVAMKQEHIRRSSLADLF 793 (922)
Q Consensus 721 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~-------~rv~f~~~~~~~~~~~~~~~~dv~ 793 (922)
+..|+.+.++++|.++.++.|+.+|+|+|+|+...+.+++.+++.|+.. ++|.|.|. ..+...+|+.+||+
T Consensus 204 ~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~--~~dl~~~y~~aDv~ 281 (374)
T 2xci_A 204 IHTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR--FGILKELYPVGKIA 281 (374)
T ss_dssp ECGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS--SSCHHHHGGGEEEE
T ss_pred CCCchHHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC--HHHHHHHHHhCCEE
Confidence 4578999999999999999999999999998873468999999999841 47888885 35778889999997
Q ss_pred ecCC-CCC-ChhHHHHHHHcCCCeeeec-CCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002431 794 LDTP-LCN-AHTTGTDILWAGLPMITLP-LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (922)
Q Consensus 794 l~~~-~~~-g~~t~~eal~~g~Pvv~~~-~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~ 870 (922)
+-|+ ..+ ||.+++|||+||+|||+-+ ...+.+-+. .+...|. - +...|++++++++.+|++| +.+++|+++.
T Consensus 282 vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~--~~~~~G~-l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~a 356 (374)
T 2xci_A 282 IVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKE--FLEKEGA-G-FEVKNETELVTKLTELLSV-KKEIKVEEKS 356 (374)
T ss_dssp EECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHH--HHHHTTC-E-EECCSHHHHHHHHHHHHHS-CCCCCHHHHH
T ss_pred EECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHH--HHHHCCC-E-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 6654 333 5899999999999999632 122222121 1112243 1 3457999999999999999 9999999998
Q ss_pred Hhhc
Q 002431 871 KSVR 874 (922)
Q Consensus 871 ~~~~ 874 (922)
|+..
T Consensus 357 r~~~ 360 (374)
T 2xci_A 357 REIK 360 (374)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.55 E-value=8.7e-12 Score=140.12 Aligned_cols=374 Identities=10% Similarity=-0.061 Sum_probs=226.1
Q ss_pred HcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHH
Q 002431 11 KSG-SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIR 88 (922)
Q Consensus 11 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 88 (922)
+.| +++.|..+|++++...|. |+++.+..+|++++...| +...|........+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 377888888888877765 788999999999988877 66777777777666663 355677
Q ss_pred HHHHHHhc---CCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 002431 89 YYLVAIEL---RPNFADAWSNLASAYM----RKGRLNEAAQCCRQALALNPLLVDA-HSNLGNLMKAQGLVQEAYSCYLE 160 (922)
Q Consensus 89 ~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~ 160 (922)
.|+.++.. ++.+...|...+..+. .+++.+.+..+|++++.....+.+- |......... .+...+.....+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH
Confidence 78888764 5677788887777654 3467788888899988853333332 2222111111 111111111111
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHhh
Q 002431 161 ALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKAL--GM-----PQEAIMCYQRAVQT 232 (922)
Q Consensus 161 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~~ 232 (922)
.. ..+..|...++.+....+. +...|......-... +- .+.....|++++..
T Consensus 149 ~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 149 TL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp HH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 00 1122222222222221111 222333332222111 00 22344556666555
Q ss_pred CCC-hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------
Q 002431 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL------------ 299 (922)
Q Consensus 233 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 299 (922)
.|. ...|...+..+...|+.++|...|++++.. |.+...+...+... +.+ +. ++++.+.
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC----------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccchhhhh
Confidence 554 555555565556666666666666666655 55544444333221 111 11 1111110
Q ss_pred -CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHH
Q 002431 300 -QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVN 377 (922)
Q Consensus 300 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 377 (922)
.+....+|...+....+.+..+.|..+|+++ ...+.....|...+.+....+ +.+.|..+|+.+++..|+++..+..
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 0112356777777777788899999999999 433334456666666665555 6999999999999999999988888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
.+......|+.+.|...|+++ +.....|......-...|+.+.+..+++++++
T Consensus 360 yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999999999998 34678888888888889999999999999986
No 144
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.53 E-value=5.7e-15 Score=162.48 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=115.4
Q ss_pred EEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 714 FIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 714 ~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
++++.++|+. |+. +..+.+..|+.+|+|+|+|+ ++++|+ .++|+|+|.++.++...+|+.+|
T Consensus 223 ~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~---------~~~~~l-~~~V~f~G~~~~~~l~~~~~~ad 286 (406)
T 2hy7_A 223 IHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM---------GRHPGY-GDNVIVYGEMKHAQTIGYIKHAR 286 (406)
T ss_dssp EEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS---------CCCTTC-CTTEEEECCCCHHHHHHHHHTCS
T ss_pred cEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch---------HHhcCC-CCCEEEcCCCCHHHHHHHHHhcC
Confidence 6778888775 554 66677788999999999876 556788 58999999999999999999999
Q ss_pred EEecCCCCCC-hhHHHHHH-------HcCCCeeeecCCcchhhhHHHHHHhcCCCCcc-c-cCCHHHHHHHHHHHhcCHH
Q 002431 792 LFLDTPLCNA-HTTGTDIL-------WAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I-VNSMKEYEERAVSLALDRQ 861 (922)
Q Consensus 792 v~l~~~~~~g-~~t~~eal-------~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~-i-~~~~~~~~~~~~~l~~d~~ 861 (922)
|||.|+.++| |++++||| +||+|||+.+. + . -|..+.+ + ..|++++++++.+++.|++
T Consensus 287 v~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v-----~-~~~~G~l~v~~~d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 287 FGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------V-----V-GPYKSRFGYTPGNADSVIAAITQALEAPR 354 (406)
T ss_dssp EEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------G-----T-CSCSSEEEECTTCHHHHHHHHHHHHHCCC
T ss_pred EEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------c-----c-cCcceEEEeCCCCHHHHHHHHHHHHhCcc
Confidence 9999999888 99999999 99999997543 1 1 1444413 2 3699999999999998887
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHH--HHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERS--YFKM 896 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--y~~~ 896 (922)
+. . ...|+++.++++++++ |+++
T Consensus 355 ---------~~-~--~~~~sw~~~a~~~~~~~~y~~~ 379 (406)
T 2hy7_A 355 ---------VR-Y--RQCLNWSDTTDRVLDPRAYPET 379 (406)
T ss_dssp ---------CC-C--SCCCBHHHHHHHHHCGGGSGGG
T ss_pred ---------hh-h--hhcCCHHHHHHHHHHhhccccc
Confidence 11 2 4569999999999999 7654
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=2e-15 Score=161.82 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=142.1
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------------ADGLVNRGN 380 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 380 (922)
..+++++|+..+++++...|....++..+|.++...|++++|+..|+++++++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888889999999999999999999999999999999999998 689999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
++.++|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++.++..++...++++++.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888774
Q ss_pred -HHHHHHHHH
Q 002431 461 -RMFSEVEGI 469 (922)
Q Consensus 461 -~~~~~~~~~ 469 (922)
..+.++...
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 345555443
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.53 E-value=3.1e-14 Score=148.43 Aligned_cols=197 Identities=13% Similarity=0.006 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...+..+|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (922)
++...|++++|+..|+++++.+|++...+......... ..++...........+.+..+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 88888888888888888877766542211111111111 11122222222234455555555554443 56667777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 002431 190 QYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAVQ 231 (922)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 231 (922)
+.++++++.+|++......+...+... +.+++|.+.|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777666665555555555554 556666666666554
No 147
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=3.1e-13 Score=123.11 Aligned_cols=133 Identities=36% Similarity=0.587 Sum_probs=101.7
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
+++.+|.++...|++++|...++++++..|.+...+..++.++...|++++|+..++++++..|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566666666777777777777776666666667777777777777777777777777777777777777788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 386 GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
|++++|+..++++++..|.+..++..++.++...|++++|...++++++.+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888777778888888888888888888888888877765
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=3e-14 Score=132.36 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002431 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (922)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (922)
...|++++..+|++...++.+|..+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+++.+++.+|.+|...|++++|+..|+++++++|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999999999999999987654
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=7.5e-14 Score=145.49 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=135.5
Q ss_pred hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHH
Q 002431 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (922)
Q Consensus 236 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (922)
...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002431 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (922)
Q Consensus 316 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (922)
..|++++|+..|+++++.+|++...+...+..... ..++...........+.+......++..+ .|++++|++.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 77777777777777777777655444433333332 22223333333345566666666666554 67888888888
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 002431 396 IRAITIRPTMAEAHANLASAYKDS-GHVEAAIKSYKQALLL 435 (922)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 435 (922)
+++++.+|++......+...+.+. +.+++|.+.|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888777777777777666 6677888888877654
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=6e-13 Score=132.24 Aligned_cols=174 Identities=14% Similarity=0.034 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 002431 17 QALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG----DIDLAIRYYLV 92 (922)
Q Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 92 (922)
+|++.|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 456666666654 45667777777777777777777777776654 456666677776666 5 66777777766
Q ss_pred HHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 002431 93 AIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKA----QGLVQEAYSCYLEAL 162 (922)
Q Consensus 93 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 162 (922)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+.++ .++.+++.+|.+|.. .+++++|+..|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 643 3456666666666665 6666666666666666555 235666666666666 556666666666666
Q ss_pred hhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 002431 163 RIQPTFAIAWSNLAGLFMES-G-----DLNRALQYYKEAVKL 198 (922)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~~ 198 (922)
+. +.++.+++.++.+|... | ++++|+.+|+++.+.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55 44455566666666543 2 566666666666554
No 151
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=9.6e-13 Score=119.76 Aligned_cols=131 Identities=43% Similarity=0.675 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (922)
++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|.+..++..++.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 44444444444555555555554444444444444444444444445555555554444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
++++|+..++++++..|.+..++..++.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444433
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=4.9e-14 Score=130.88 Aligned_cols=118 Identities=17% Similarity=0.073 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
..|++++..+|.+..+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (922)
++.+++.+|.++...|++++|+..|+++++.+|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777777777777777777665543
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.47 E-value=2.6e-12 Score=131.41 Aligned_cols=248 Identities=10% Similarity=-0.023 Sum_probs=153.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 120 (922)
-.+..|+|..++.... +..|.+ ....+.+.++|..+|++.... ...| ...+...++..+ . ++ |
T Consensus 22 n~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~-~-~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFL-D-TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHH-T-TT---C
T ss_pred HHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHh-c-cc---H
Confidence 4456677777776332 233332 234455566666666665311 1111 222333333333 2 22 6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP--TFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+..+++.+...+.....+..+|.++...|++++|++.+.+.+..+| .+..++..++.++.+.|+.+.|.+.++++.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777777666555556666777777777777777777777777665 67777777777777777777777777777777
Q ss_pred CCC----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002431 199 KPT----FPDAYLNLGNV--YKALG--MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (922)
Q Consensus 199 ~p~----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 265 (922)
+|+ +..+...++.. ....| ++.+|..+|+++.+..|+......+-.++..+|++++|...++.+++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 662 12333333333 44444 777777777777777765111111111677777788777777766654
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 002431 266 -----DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQAL 307 (922)
Q Consensus 266 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (922)
+|++++++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 47777777777777777776 77788888888888777543
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.2e-13 Score=157.52 Aligned_cols=188 Identities=10% Similarity=0.086 Sum_probs=146.5
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC--
Q 002431 251 QADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR----------VDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN-- 318 (922)
Q Consensus 251 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 318 (922)
..++|++.+++++..+|++..+|+..+.++...++ ++++++.++++++.+|++..+|...+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34567888888888888888888888888887777 788888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh------------
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-NYADAISCYNEVLRIDPLAADGLVNRGNTYKEI------------ 385 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------------ 385 (922)
++++++..++++++.+|.+..+|+..+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 5588888888888888888888888888888887 788888888888888888888888888887775
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHhcCCC
Q 002431 386 --GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA------------AIKSYKQALLLRPD 438 (922)
Q Consensus 386 --g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~ 438 (922)
+.+++|++++.+++..+|++..+|+.++.++.+.+++++ |+..|.++++++|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 456777777778887788777777777777777776555 44455566655554
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.47 E-value=1.6e-13 Score=126.65 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666677777777777777878888888888888888887777777777777788887788888888888887777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002431 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (922)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (922)
++.+++.+|.++...|++++|+..|+++++.+|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 7777777777777777777777777777777776655433
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.47 E-value=1.6e-13 Score=126.68 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
..|++++..+|++...++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++.+++.+|.+|...|++++|+..|+++++++|+++...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 999999999999999999999999999999998877543
No 157
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.47 E-value=2.6e-13 Score=150.55 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=133.6
Q ss_pred CcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC----eEEEEecCC-----hh---hHHHHHHHHHHc---
Q 002431 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFP-----AA---GEMRLRAYAVAQ--- 765 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~----~~l~~~~~~-----~~---~~~~l~~~~~~~--- 765 (922)
+|+++| +..++++++|+. |+.+.++++|.+++++.|+ .+|+++|.+ +. .++.+++.+.+.
T Consensus 248 lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~ 324 (482)
T 1uqt_A 248 LKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGK 324 (482)
T ss_dssp HHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhh
Confidence 566676 457788888874 9999999999999999885 678888853 21 123444444432
Q ss_pred -CCC-CCceE-EcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC-----CeeeecCCcchhhhHHHHHHhcC
Q 002431 766 -GVQ-PDQII-FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL-----PMITLPLEKMATRVAGSLCLATG 836 (922)
Q Consensus 766 -g~~-~~rv~-f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~-----Pvv~~~~~~~~~r~~~~~~~~~g 836 (922)
|.. ...|+ |.|.++..+..++|+.+||||.||.++| |++++|||+||+ |||+......+.-+ .
T Consensus 325 ~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l--------~ 396 (482)
T 1uqt_A 325 YGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL--------T 396 (482)
T ss_dssp HCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC--------T
T ss_pred cccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh--------C
Confidence 321 12466 5788999999999999999999999999 999999999998 78854321111111 1
Q ss_pred CCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHH
Q 002431 837 LGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKM 896 (922)
Q Consensus 837 ~~~~~i~--~~~~~~~~~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~ 896 (922)
.. +++ .|++++++++.++++ +++.++++.+++++++.. ||.+.+++.+.+.|+++
T Consensus 397 -~g-~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 397 -SA-LIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp -TS-EEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred -Ce-EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 23 333 489999999999998 467788888888888754 99999999999999775
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=2.5e-13 Score=130.85 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=96.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCH--
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANA-WKEKGDI-- 83 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 83 (922)
..+...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3355667777777778777777777777777778777777888888888877777777777777777777 6677777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (922)
++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777777777777777777777777777777777777777777777776644
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.44 E-value=1.3e-13 Score=135.74 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc----------------hhhhhH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS----------------APFNNL 344 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~l 344 (922)
...|+++++.+.++...+..+.....+..+|..+...|++++|+..|++++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333334444445555555555555555555555444443 567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHH
Q 002431 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (922)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (922)
|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.++
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887777776
Q ss_pred HH-HHHHHHHhc
Q 002431 425 AI-KSYKQALLL 435 (922)
Q Consensus 425 A~-~~~~~al~~ 435 (922)
+. ..|.+++..
T Consensus 175 ~~~~~~~~~f~~ 186 (198)
T 2fbn_A 175 KDKLTFGGMFDK 186 (198)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcc
Confidence 66 455555443
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=2.5e-12 Score=146.69 Aligned_cols=174 Identities=10% Similarity=0.030 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcC--
Q 002431 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM----------LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQG-- 352 (922)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-- 352 (922)
..++|++.+++++..+|++..+|+..+.++...++ +++++..++++++.+|++..+|+..+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 44788999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc------------
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG-RVTDAIQDYIRAITIRPTMAEAHANLASAYKDS------------ 419 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 419 (922)
++++|+++++++++.+|.+..+|..++.++...| .++++++++.++++.+|.+..+|+.++.++.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhh
Q 002431 420 --GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWED 458 (922)
Q Consensus 420 --g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 458 (922)
+.+++|++++++++..+|++..+|+.+...+...++.++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999988888776544
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.2e-12 Score=116.18 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALN------PLLVDAHSNLGNL 144 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~ 144 (922)
..|++++|+..|+++++.+ |.+..++..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 5555555555555555555 5444444444443
No 162
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=4.5e-12 Score=133.24 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCC------
Q 002431 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP------QALTNLGNIYMEWNMLPAAASYYKATLAVTTGL------ 337 (922)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------ 337 (922)
...+...+..+...|++++|++.++++++..+... ..+..+|.++...|++++|+..+++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777788888888888888887766543 235567777788888888888888888764432
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVL---RIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------ 404 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 404 (922)
..+++.+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+..+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4478888999999999999999999998 4455543 58889999999999999999999999887532
Q ss_pred cHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 002431 405 MAEAHANLASAYKDSGHVEAA-IKSYKQALLL 435 (922)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 435 (922)
...+++++|.+|.+.|++++| ..+|++++.+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267899999999999999999 7889998865
No 163
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.43 E-value=2.5e-12 Score=142.75 Aligned_cols=324 Identities=11% Similarity=0.025 Sum_probs=186.4
Q ss_pred CCcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCC-------------
Q 002431 532 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA------------- 598 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 598 (922)
...++|||.+++.....|- .-+.++.+.+.+.++||.+++... +.+.+...+..++.++.
T Consensus 16 ~~~~~MrIl~~~~~~~Gh~--~~~~~la~~L~~~GheV~v~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 16 IEGRHMRVLFASLGTHGHT--YPLLPLATAARAAGHEVTFATGEG-----FAGTLRKLGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp --CCSCEEEEECCSSHHHH--GGGHHHHHHHHHTTCEEEEEECGG-----GHHHHHHTTCEEEECCCCHHHHHHHHHHHH
T ss_pred cccceeEEEEEcCCCcccH--HHHHHHHHHHHHCCCEEEEEccHH-----HHHHHHhcCCceeecCcccccchhhhhhhh
Confidence 4467899999996543332 345567777777789999988631 34556666666666653
Q ss_pred --------------C--------CH------HHHHHHHHhCCCeEEEcCCCcCCCCc-hhhhhc-CCCceEEeccccCCC
Q 002431 599 --------------M--------SS------DMIAKLINEDKIQILINLNGYTKGAR-NEIFAM-QPAPIQVSYMGFPGT 648 (922)
Q Consensus 599 --------------~--------~~------~~~~~~i~~~~~dil~~~~~~~~~~~-~~~~~~-~~apvq~~~~g~~~t 648 (922)
+ .. ..+.+.|++.++||+|--. ..- ..++++ ...|+.++..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~----~~~~~~~aa~~~giP~v~~~~~~~~~ 164 (412)
T 3otg_A 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEI----SNYGAGLAALKAGIPTICHGVGRDTP 164 (412)
T ss_dssp HSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEET----TCHHHHHHHHHHTCCEEEECCSCCCC
T ss_pred hcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECc----hhhHHHHHHHHcCCCEEEecccccCc
Confidence 0 01 5677888899999985321 111 122222 336887765454321
Q ss_pred CCC-Cc----cc---------------EEEecCccCCcCc-cCCCccceeecCCccccCCCccccccCCCCCCCCCcCCC
Q 002431 649 TGA-SY----ID---------------YLVTDEFVSPLRY-AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDY 707 (922)
Q Consensus 649 ~g~-~~----~d---------------~~~~d~~~~~~~~-~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~ 707 (922)
.+. +. +. +..+|.++.+... ...+.+++ +....... +.+.. ....+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~------~~~~~-~~~~~~~~ 234 (412)
T 3otg_A 165 DDLTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRA---RPRRHELR------PVPFA-EQGDLPAW 234 (412)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHT---CTTEEECC------CCCCC-CCCCCCGG
T ss_pred hhhhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccC---CCCcceee------ccCCC-CCCCCCCc
Confidence 110 00 00 0112222222111 11111100 00000000 00101 11122233
Q ss_pred --C-CCCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHH
Q 002431 708 --G-LPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (922)
Q Consensus 708 --~-l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~ 784 (922)
. .+++.+++.++++..+....++....+.+++.+...+++.|.++. .+.++ ++ .++|.|.|+++ ..
T Consensus 235 ~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~-~~~l~------~~-~~~v~~~~~~~---~~ 303 (412)
T 3otg_A 235 LSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLD-VSGLG------EV-PANVRLESWVP---QA 303 (412)
T ss_dssp GGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCC-CTTCC------CC-CTTEEEESCCC---HH
T ss_pred cccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCC-hhhhc------cC-CCcEEEeCCCC---HH
Confidence 2 244557788888776555566655555666665444444444431 22222 35 58999999985 55
Q ss_pred HhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHH
Q 002431 785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 785 ~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~ 861 (922)
.++..+|+|+.+ +|++|++|||++|+|+|+.+...- ....+..+...|..- ++.. |++++.+++.+|++|++
T Consensus 304 ~~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~~~-q~~~~~~v~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~ 378 (412)
T 3otg_A 304 ALLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWAGD-SFANAQAVAQAGAGD-HLLPDNISPDSVSGAAKRLLAEES 378 (412)
T ss_dssp HHGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEE-ECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HHHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHH
Confidence 567789999943 456999999999999998765421 122234555657655 5543 88999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
.++++++..++... .++.+++++.+++.+.+
T Consensus 379 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 379 YRAGARAVAAEIAA---MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHHH---SCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 99999888877653 37899999999988743
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-12 Score=116.72 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCHHHHHHHHH
Q 002431 419 SGHVEAAIKSYKQALLLR------PDFPEATCNLLH 448 (922)
Q Consensus 419 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 448 (922)
.|++++|+..|+++++++ |++..+...+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 666666666666666666 555555554443
No 165
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=2.9e-12 Score=127.53 Aligned_cols=131 Identities=19% Similarity=0.155 Sum_probs=109.9
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 002431 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI 385 (922)
Q Consensus 306 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 385 (922)
.++.+|..+...|++++|+..|++++ +.++.++..+|.++...|++++|+..|+++++.+|.++.+++.+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 35566777777777777777777764 235677888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 386 GRVTDAIQDYIRAITIRPTMA----------------EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
|++++|+..|+++++..|++. .+++.+|.+|...|++++|+..|+++++.+|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888888777655 899999999999999999999999999999986
No 166
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=1.1e-12 Score=126.19 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHhCCH--HH
Q 002431 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT-YKEIGRV--TD 390 (922)
Q Consensus 314 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~ 390 (922)
+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567888888888888888888888899999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 391 AIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
|+..++++++.+|++..++..+|.+|...|++++|+..|+++++.+|+++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999999987543
No 167
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.42 E-value=3.7e-12 Score=126.78 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (922)
+.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 455666666666666666666664 22 455666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002431 83 IDLAIRYYLVAIELRPNFA----------------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 134 (922)
+++|+..|+++++..|++. .++..+|.++...|++++|+..++++++.+|++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666555443 566666666666666666666666666666544
No 168
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.42 E-value=9.7e-13 Score=143.71 Aligned_cols=335 Identities=12% Similarity=0.105 Sum_probs=191.1
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccC-ceEECC----CCC--------
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS----AMS-------- 600 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~-------- 600 (922)
++||.+|.+. -|-...+.++++.+.+. .+|+++..+++..+ -..+.+....- .-+++. +.+
T Consensus 27 ~~kI~~v~Gt---r~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~-m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~ 102 (403)
T 3ot5_A 27 KIKVMSIFGT---RPEAIKMAPLVLALEKEPETFESTVVITAQHRE-MLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRV 102 (403)
T ss_dssp CEEEEEEECS---HHHHHHHHHHHHHHHTCTTTEEEEEEECC------CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHH
T ss_pred cceEEEEEec---ChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHH-HHHHHHHhcCCCCCcccccCCCCCCHHHHHHHH
Confidence 4789999852 34444567777777654 69999888876521 11222332221 112322 112
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCCCCchhhh-----h-cCCCceEEeccccCCCCC----CCc--cc---EEEecCccCC
Q 002431 601 SDMIAKLINEDKIQILINLNGYTKGARNEIF-----A-MQPAPIQVSYMGFPGTTG----ASY--ID---YLVTDEFVSP 665 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~-----~-~~~apvq~~~~g~~~t~g----~~~--~d---~~~~d~~~~~ 665 (922)
...+.+.+++.++|++ |.+|.+...+ + .+-.||....-|- .|.+ .+. +- ..++|.+++|
T Consensus 103 ~~~l~~~l~~~kPD~V-----i~~gd~~~~l~~~laA~~~~IPv~h~~agl-rs~~~~~~~p~~~~r~~~~~~a~~~~~~ 176 (403)
T 3ot5_A 103 MNGINEVIAAENPDIV-----LVHGDTTTSFAAGLATFYQQKMLGHVEAGL-RTWNKYSPFPEEMNRQLTGVMADIHFSP 176 (403)
T ss_dssp HHHHHHHHHHHCCSEE-----EEETTCHHHHHHHHHHHHTTCEEEEESCCC-CCSCTTSSTTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHcCCCEE-----EEECCchhHHHHHHHHHHhCCCEEEEECCc-cccccccCCcHHHHHHHHHHhcCEEECC
Confidence 2457888899999999 5555432222 2 2335764322121 1111 111 00 1134556666
Q ss_pred cCccC-------CCccceeecCCccccCCCccccccCCCC-CCCCCcCCCCCCCCcEEEEecCCC---CCCCHHHHHHHH
Q 002431 666 LRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDP-NCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWC 734 (922)
Q Consensus 666 ~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~-~~~~~r~~~~l~~~~~~~~~~~~~---~K~~~~~~~~~~ 734 (922)
.+... .-.+++..+++..+... ...... .....++++ +++.+++.+.+|. .|..+.+++++.
T Consensus 177 se~~~~~l~~~Gi~~~~i~vvGn~~~D~~-----~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~a~~ 249 (403)
T 3ot5_A 177 TKQAKENLLAEGKDPATIFVTGNTAIDAL-----KTTVQKDYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFEAVR 249 (403)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCCHHHHHH-----HHHSCTTCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcccEEEeCCchHHHH-----HhhhhhhcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHHHHH
Confidence 54311 11234544444322100 000110 112334445 5555677777764 366789999999
Q ss_pred HHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~ 813 (922)
++.++.|+.++++. |.++..++.+++. .+. .++|.|.|.+++.++..+|+.+|+++-+| ||.+ +||+++|+
T Consensus 250 ~l~~~~~~~~~v~~~~~~~~~~~~l~~~---~~~-~~~v~l~~~l~~~~~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~ 321 (403)
T 3ot5_A 250 EIVESREDTELVYPMHLNPAVREKAMAI---LGG-HERIHLIEPLDAIDFHNFLRKSYLVFTDS---GGVQ-EEAPGMGV 321 (403)
T ss_dssp HHHHHCTTEEEEEECCSCHHHHHHHHHH---HTT-CTTEEEECCCCHHHHHHHHHHEEEEEECC---HHHH-HHGGGTTC
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHH---hCC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccHH-HHHHHhCC
Confidence 99999999988876 4444323344332 354 37899999998889999999999998665 5555 99999999
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
|||+.+..+ +|.- .+ ..|-.- ++..|.+++++.+.++..|++.++++++..+ .|.....++++.+..
T Consensus 322 PvV~~~~~~--~~~e--~v-~~g~~~-lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~-------~~g~~~aa~rI~~~l 388 (403)
T 3ot5_A 322 PVLVLRDTT--ERPE--GI-EAGTLK-LIGTNKENLIKEALDLLDNKESHDKMAQAAN-------PYGDGFAANRILAAI 388 (403)
T ss_dssp CEEECCSSC--SCHH--HH-HHTSEE-ECCSCHHHHHHHHHHHHHCHHHHHHHHHSCC-------TTCCSCHHHHHHHHH
T ss_pred CEEEecCCC--cchh--he-eCCcEE-EcCCCHHHHHHHHHHHHcCHHHHHHHHhhcC-------cccCCcHHHHHHHHH
Confidence 999874221 1111 12 235322 4546999999999999999998888765322 233334445555554
Q ss_pred HHHHHHHhcCCCCCccee
Q 002431 894 FKMWSLHCSGQKPQHFKV 911 (922)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~ 911 (922)
.+.+. .+.+|..|.|
T Consensus 389 ~~~l~---~~~~~~~~~~ 403 (403)
T 3ot5_A 389 KSHFE---ETDRPEDFIV 403 (403)
T ss_dssp HHHHT---CCCCCCCCCC
T ss_pred HHHhC---CCCCCccccC
Confidence 44443 2556777764
No 169
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=4.8e-12 Score=120.11 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=74.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH--hhcccCChhhHhHHHHHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLLH--TLQCVCSWEDRDRMFSEVEGIIRR 472 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~ 472 (922)
++++|+..|+++++.+|++..++..+.. .+...|+++++...+.+...++..
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 5556666665555555555555533222 244445555555555555555443
No 170
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.40 E-value=1e-11 Score=117.84 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..+..+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNL--GNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~ 163 (922)
..|++++|+..++++++.+|.+..++..+ +..+...|++++|+..+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777777776666333 3336666667777666665543
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=6.9e-12 Score=131.81 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChH------HHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCc------hhhh
Q 002431 275 NLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ------ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS------APFN 342 (922)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~ 342 (922)
..+..+...|++++|...++++++..+..+. .+..+|.++...+++++|+..|++++...+... .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455666677777777777777766555443 233466666667777777777777776543322 2577
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHH
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAH 409 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 409 (922)
.+|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+..+++++++.+. ...++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888888888842 1223458889999999999999999999999987533 27889
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhc
Q 002431 410 ANLASAYKDSGH-VEAAIKSYKQALLL 435 (922)
Q Consensus 410 ~~la~~~~~~g~-~~~A~~~~~~al~~ 435 (922)
+.+|.+|.++|+ +++|++.|++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999994 69999999999875
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.39 E-value=1.9e-11 Score=128.34 Aligned_cols=169 Identities=9% Similarity=0.042 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLL--- 134 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--- 134 (922)
|.....+...+..+...|++++|++.+.++++..+... ..+..+|.++...|++++|+..++++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33445566677777777888888888777777665533 235567777777778888888888887654332
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002431 135 ---VDAHSNLGNLMKAQGLVQEAYSCYLEAL---RIQPTF----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT--- 201 (922)
Q Consensus 135 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--- 201 (922)
..++..+|.++...|++++|+..|++++ +..|++ ..++.++|.+|...|++++|+.+++++++..++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 4577778888888888888888888877 334442 257778888888888888888888888765422
Q ss_pred ---CHHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 002431 202 ---FPDAYLNLGNVYKALGMPQEA-IMCYQRAVQT 232 (922)
Q Consensus 202 ---~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 232 (922)
...++..+|.++...|++++| ...+++++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 156778888888888888888 6778877764
No 173
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.39 E-value=4.8e-13 Score=146.06 Aligned_cols=305 Identities=12% Similarity=0.085 Sum_probs=180.2
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCC-CeEEEEEecCCCCChHHHHHHHhccC-ceEECCCC----C--------
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVSAM----S-------- 600 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~-------- 600 (922)
+.+||.+|.+. -|-...+.++++.+.+. .+|+.+..+++..+ -..+.+..... .-+++.-+ +
T Consensus 24 ~m~ki~~v~Gt---r~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~-~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~ 99 (396)
T 3dzc_A 24 AMKKVLIVFGT---RPEAIKMAPLVQQLCQDNRFVAKVCVTGQHRE-MLDQVLELFSITPDFDLNIMEPGQTLNGVTSKI 99 (396)
T ss_dssp CCEEEEEEECS---HHHHHHHHHHHHHHHHCTTEEEEEEECCSSSH-HHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHH
T ss_pred CCCeEEEEEec---cHhHHHHHHHHHHHHhCCCCcEEEEEecccHH-HHHHHHHhcCCCCceeeecCCCCCCHHHHHHHH
Confidence 45789998853 34444567777776543 69998888887642 12232332221 11233211 2
Q ss_pred HHHHHHHHHhCCCeEEEcCCCcCCCCchh-----hhh-cCCCceEEeccccCCCCC-----CCc-c----cEEEecCccC
Q 002431 601 SDMIAKLINEDKIQILINLNGYTKGARNE-----IFA-MQPAPIQVSYMGFPGTTG-----ASY-I----DYLVTDEFVS 664 (922)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~-----~~~-~~~apvq~~~~g~~~t~g-----~~~-~----d~~~~d~~~~ 664 (922)
...+.+.+++.+||++ |.+|.+.. +.+ ..-.||....-|- .++ .+. + -..++|.+++
T Consensus 100 ~~~l~~~l~~~kPDvV-----i~~g~~~~~~~~~~aa~~~~IPv~h~~ag~--rs~~~~~~~~~~~~r~~~~~~a~~~~~ 172 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVV-----LVHGDTATTFAASLAAYYQQIPVGHVEAGL--RTGNIYSPWPEEGNRKLTAALTQYHFA 172 (396)
T ss_dssp HHHHHHHHHHHCCSEE-----EEETTSHHHHHHHHHHHTTTCCEEEETCCC--CCSCTTSSTTHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEE-----EEECCchhHHHHHHHHHHhCCCEEEEECCc--cccccccCCcHHHHHHHHHHhcCEEEC
Confidence 2457888999999999 45544332 222 2335765432221 111 111 0 0124566666
Q ss_pred CcCccC-C------CccceeecCCccccCCCccccccCCCC--C----CCCCcCCCC-CC-CCcEEEEecCCC---CCCC
Q 002431 665 PLRYAH-I------YSEKLVHVPHCYFVNDYKQKNMDVLDP--N----CQPKRSDYG-LP-EDKFIFACFNQL---YKMD 726 (922)
Q Consensus 665 ~~~~~~-~------~~e~~~~lp~~~~~~~~~~~~~~~~~~--~----~~~~r~~~~-l~-~~~~~~~~~~~~---~K~~ 726 (922)
|.+... . -.+++..+++..+.. .....+. . ...+|+++| |+ ++.+++.+.+|. .|..
T Consensus 173 ~se~~~~~l~~~G~~~~ki~vvGn~~~d~-----~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~ 247 (396)
T 3dzc_A 173 PTDTSRANLLQENYNAENIFVTGNTVIDA-----LLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGF 247 (396)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCCHHHHH-----HHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHH
T ss_pred CCHHHHHHHHHcCCCcCcEEEECCcHHHH-----HHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHH
Confidence 655311 1 123444444322110 0000000 0 023577899 44 455566666543 3777
Q ss_pred HHHHHHHHHHHhhCCCeEEEEe-cCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHH
Q 002431 727 PEIFNTWCNILRRVPNSALWLL-RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG 805 (922)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~ 805 (922)
+.+++++.++.++.|+.++++. |.++..++.+++. .+. .++|.|.+.+++.++..+|+.+|++|-+| ||++
T Consensus 248 ~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~---~~~-~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---Gg~~- 319 (396)
T 3dzc_A 248 ERICQALITTAEQHPECQILYPVHLNPNVREPVNKL---LKG-VSNIVLIEPQQYLPFVYLMDRAHIILTDS---GGIQ- 319 (396)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHH---TTT-CTTEEEECCCCHHHHHHHHHHCSEEEESC---SGGG-
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHH---HcC-CCCEEEeCCCCHHHHHHHHHhcCEEEECC---ccHH-
Confidence 8999999999988999988875 5444324444433 344 47899999988889999999999999776 5544
Q ss_pred HHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 806 ~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
+||+++|+|||+....+- +. .++ ..|-.- ++..|.+++++.+.+|..|++.+++|++.
T Consensus 320 ~EA~a~G~PvV~~~~~~~--~~--e~v-~~G~~~-lv~~d~~~l~~ai~~ll~d~~~~~~m~~~ 377 (396)
T 3dzc_A 320 EEAPSLGKPVLVMRETTE--RP--EAV-AAGTVK-LVGTNQQQICDALSLLLTDPQAYQAMSQA 377 (396)
T ss_dssp TTGGGGTCCEEECCSSCS--CH--HHH-HHTSEE-ECTTCHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHHHHcCCCEEEccCCCc--ch--HHH-HcCceE-EcCCCHHHHHHHHHHHHcCHHHHHHHhhc
Confidence 999999999998642211 11 112 225433 55568999999999999999988877764
No 174
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=4.3e-12 Score=115.25 Aligned_cols=117 Identities=16% Similarity=0.240 Sum_probs=64.9
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 383 (922)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
..|++++|+..|+++++.+|++..++..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555444
No 175
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.38 E-value=3.4e-12 Score=121.07 Aligned_cols=113 Identities=21% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 002431 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (922)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (922)
+.+...+..+|.++...|++++|+..|+++++++|.++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
+|..+|++++|+..|+++++++|+++.++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665543
No 176
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=6e-12 Score=114.28 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666655555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 149 (922)
++...|++++|+..++++++.+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666665555555555555555555443
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.38 E-value=8e-13 Score=129.96 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHH
Q 002431 46 LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA----------------DAWSNLAS 109 (922)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 109 (922)
.|++++|.+.++......+..+..+..+|..+...|++++|+..|+++++..|.++ .++..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333344444444444444444444444444444444333 44445555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (922)
++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++...++..++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555554444444444333
No 178
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.37 E-value=7.2e-12 Score=113.23 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
|.+...+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (922)
++...|++++|+..++++++.+|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666666666655543
No 179
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.37 E-value=1.2e-11 Score=136.16 Aligned_cols=165 Identities=13% Similarity=0.169 Sum_probs=119.5
Q ss_pred CCCcEEEEecCCC--CCCC-HHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh
Q 002431 710 PEDKFIFACFNQL--YKMD-PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (922)
Q Consensus 710 ~~~~~~~~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~ 786 (922)
++..+++.++++. .|.. ..+++.+.+. +..|+.+++++++++. .+.+. ++ +++|.|.|+++..+.+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~-~~~l~------~~-~~~v~~~~~~~~~~ll-- 284 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH-RALLT------DL-PDNARIAESVPLNLFL-- 284 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG-GGGCT------TC-CTTEEECCSCCGGGTG--
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc-hhhcc------cC-CCCEEEeccCCHHHHH--
Confidence 3445778788876 3455 8888888888 8898999988876643 33332 45 5889999998765544
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC-----CHHHHHHHHHHHhcCHH
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN-----SMKEYEERAVSLALDRQ 861 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~-----~~~~~~~~~~~l~~d~~ 861 (922)
..+|+|+. .+|++|++|||++|+|+|+.+-.. ....-+..+...|... ++.. |++++.+++.++++|++
T Consensus 285 -~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~-~~~~~~~~~~~~~l~~ai~~ll~~~~ 358 (391)
T 3tsa_A 285 -RTCELVIC---AGGSGTAFTATRLGIPQLVLPQYF-DQFDYARNLAAAGAGI-CLPDEQAQSDHEQFTDSIATVLGDTG 358 (391)
T ss_dssp -GGCSEEEE---CCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHTTSEE-ECCSHHHHTCHHHHHHHHHHHHTCTH
T ss_pred -hhCCEEEe---CCCHHHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHcCCEE-ecCcccccCCHHHHHHHHHHHHcCHH
Confidence 88999992 355679999999999999975422 1222345566667765 5543 78999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 862 KLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
.++++++..++.. .....++.++.+|+...
T Consensus 359 ~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 359 FAAAAIKLSDEIT---AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHHHH---TSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 9999887776653 23678888888877543
No 180
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.37 E-value=6e-12 Score=119.33 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
+.+...++.+|.+++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++.+|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 110 AYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
++...|++++|+..|+++++.+|++..++...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 7777777777777777777777766665544443
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.37 E-value=3.7e-12 Score=114.59 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=89.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-------HHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-------AEAHA 410 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 410 (922)
+.++..+|..+.+.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999887654 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
.+|.++..+|++++|++.|+++++..|++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 89999999999999999999999988863
No 182
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.36 E-value=1.3e-11 Score=129.82 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------H
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE------CYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------A 101 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 101 (922)
..+...+..++..|++++|+..++++++..+..+. .+..+|..+...|++++|+.+|+++++..+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34444455555566666666666665554443322 22235555555556666666666665532221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------c
Q 002431 102 DAWSNLASAYMRKGRLNEAAQCCRQALAL---N----PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT------F 168 (922)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 168 (922)
.++..+|.+|...|++++|+.+|+++++. . +....++..+|.++..+|++++|+..++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 24556666666666666666666666532 1 112235566666666666666666666666654321 2
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002431 169 AIAWSNLAGLFMESGD-LNRALQYYKEAVKL 198 (922)
Q Consensus 169 ~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 198 (922)
..++..+|.++...|+ +++|++.+++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4566666666666663 46666666666553
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=3.9e-12 Score=113.28 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH
Q 002431 420 GHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~ 441 (922)
|++++|+..|+++++.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999988653
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=3.6e-12 Score=115.92 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPL-------AAD-----GLVNRGNTYKEIGRVTDAIQDYIRAITI------ 401 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 401 (922)
.+...|..+.+.|++++|+..|+++++++|+ +.. +|.++|.++.++|++++|+..|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3556666777777777777777777777766 433 9999999999999999999999999999
Q ss_pred -CCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 402 -RPTMAEAH----ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 402 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|++..+| +++|.++..+|++++|+..|++++++.|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987644
No 185
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.35 E-value=1.4e-11 Score=111.25 Aligned_cols=122 Identities=26% Similarity=0.308 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002431 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (922)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (922)
|.+...+..+|..+...|++++|+..|+++++..|++..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 002431 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDL 185 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 185 (922)
++...|++++|+..++++++..|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777766666653
No 186
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=4.8e-11 Score=106.67 Aligned_cols=116 Identities=42% Similarity=0.684 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
..+++.+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..|+++++..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 55666666677777777777777777766666666666666666666677777777776666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (922)
..|++++|...++++++.+|.+..++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666665543
No 187
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.33 E-value=9.8e-12 Score=135.72 Aligned_cols=181 Identities=8% Similarity=-0.005 Sum_probs=133.4
Q ss_pred CCCcCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCC---eEEEEecC-----ChhhHHHHH----HHHHHc-
Q 002431 701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN---SALWLLRF-----PAAGEMRLR----AYAVAQ- 765 (922)
Q Consensus 701 ~~~r~~~~l~~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~---~~l~~~~~-----~~~~~~~l~----~~~~~~- 765 (922)
..+|+++| +..++.+++|+. |+.+.++++| +++++.|+ .+|+++|. ++. .+.++ +.+.+.
T Consensus 272 ~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~-y~~l~~~l~~lv~~in 346 (496)
T 3t5t_A 272 EGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPA-NADYVHRVETAVAEAN 346 (496)
T ss_dssp TTHHHHHT---TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchH-HHHHHHHHHHHHHHhc
Confidence 34666666 456777778774 9999999999 99999996 45777763 222 23444 433332
Q ss_pred ---CCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcC---CCeeeecCCcchhhhHHHHHHhcCCC
Q 002431 766 ---GVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG---LPMITLPLEKMATRVAGSLCLATGLG 838 (922)
Q Consensus 766 ---g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g---~Pvv~~~~~~~~~r~~~~~~~~~g~~ 838 (922)
|.. +|+|+|.++..+..++|+.+||||.|+.++| |++++|||+|| .|+|+......+. .+ |-.
T Consensus 347 ~~~g~~--~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~-----~l---~~~ 416 (496)
T 3t5t_A 347 AELGSD--TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAE-----VL---GEY 416 (496)
T ss_dssp HHHCTT--SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHH-----HH---GGG
T ss_pred cccCCc--CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHH-----Hh---CCC
Confidence 442 8999999999999999999999999999999 99999999996 6777433221121 12 112
Q ss_pred Ccccc-CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 839 EEMIV-NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 839 ~~~i~-~~~~~~~~~~~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
..+|. .|++++++++.+++++ ++.+++..+++++.+.. +|...+++.+.+..+....+
T Consensus 417 allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 417 CRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp SEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 21332 5899999999998875 56777778888888754 99999999999988887654
No 188
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=3.4e-11 Score=107.63 Aligned_cols=107 Identities=39% Similarity=0.608 Sum_probs=45.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..++.++...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 421 HVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
++++|...|+++++.+|+++.++..+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 444444444444444444444443333
No 189
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.33 E-value=4.7e-12 Score=139.57 Aligned_cols=326 Identities=11% Similarity=0.010 Sum_probs=166.7
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-C-----------
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-S----------- 600 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------- 600 (922)
...+|||.+++.....| -.-+.++.+.+.+.+.||.+++.. ...+.+...+..++.+..- +
T Consensus 12 ~~~~MrIl~~~~~~~gh--~~~~~~La~~L~~~GheV~v~~~~-----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGF--VMPLVPLSWALRAAGHEVLVAASE-----NMGPTVTGAGLPFAPTCPSLDMPEVLSWDREG 84 (398)
T ss_dssp ---CCEEEEECCSSHHH--HGGGHHHHHHHHHTTCEEEEEEEG-----GGHHHHHHTTCCEEEEESSCCHHHHHSBCTTS
T ss_pred CCCceEEEEEcCCCcch--HHHHHHHHHHHHHCCCEEEEEcCH-----HHHHHHHhCCCeeEecCCccchHhhhhhhccC
Confidence 45679999998654333 234567778887778999998853 1345566665555555420 0
Q ss_pred ---------------------------HHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCCCC-
Q 002431 601 ---------------------------SDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGA- 651 (922)
Q Consensus 601 ---------------------------~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~g~- 651 (922)
...+.+.+++.++|++|- ++.+....+++. ...|+..+.+|.....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~---d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~ 161 (398)
T 4fzr_A 85 NRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLT---ETYSLTGPLVAATLGIPWIEQSIRLASPELIK 161 (398)
T ss_dssp CBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTCTHHHHHHHHHTCCEEEECCSSCCCHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE---CccccHHHHHHHhhCCCEEEeccCCCCchhhh
Confidence 125777888899998862 222222233332 346887766554322110
Q ss_pred ----CcccEEEecCccCCcCccCCCccceeecCCccccCC--CccccccCCCC-CCCCCcCCCCC-CCCcEEEEecCCCC
Q 002431 652 ----SYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND--YKQKNMDVLDP-NCQPKRSDYGL-PEDKFIFACFNQLY 723 (922)
Q Consensus 652 ----~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~--~~~~~~~~~~~-~~~~~r~~~~l-~~~~~~~~~~~~~~ 723 (922)
..+...+. .+..+.... ....+...|..+.... ......+.+.. .....+..+.. ++..+|+.++++..
T Consensus 162 ~~~~~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~~~ 238 (398)
T 4fzr_A 162 SAGVGELAPELA-ELGLTDFPD--PLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRV 238 (398)
T ss_dssp HHHHHHTHHHHH-TTTCSSCCC--CSEEEECSCGGGC----CCCEECCCCCCCCSSCCCCHHHHSCCSSCEEECC-----
T ss_pred HHHHHHHHHHHH-HcCCCCCCC--CCeEEEeCChhhCCCCCCCCCCeeeeCCCCCCCCCchhhhcCCCCCEEEEEccCcc
Confidence 00000010 111110000 0001111221111100 00000011100 11111111111 34456777777653
Q ss_pred --CC------CHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEec
Q 002431 724 --KM------DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLD 795 (922)
Q Consensus 724 --K~------~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~ 795 (922)
|+ ....++...+.++.. +.+++++++++. .+.+. ++ +++|.|.|+++..+ ++..+|+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~-~~~l~------~~-~~~v~~~~~~~~~~---ll~~ad~~v- 305 (398)
T 4fzr_A 239 PLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDKL-AQTLQ------PL-PEGVLAAGQFPLSA---IMPACDVVV- 305 (398)
T ss_dssp -----------CCSHHHHHHHGGGG-TCEEEECCCC---------------C-CTTEEEESCCCHHH---HGGGCSEEE-
T ss_pred cccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCcc-hhhhc------cC-CCcEEEeCcCCHHH---HHhhCCEEE-
Confidence 32 222333333334444 467777766543 33333 35 58999999986444 456699999
Q ss_pred CCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002431 796 TPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKS 872 (922)
Q Consensus 796 ~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~ 872 (922)
..+|++|++|||++|+|+|+.+...- ...-+..+...|..- ++.. |++++.+++.++++|++.++++++..++
T Consensus 306 --~~gG~~t~~Ea~~~G~P~v~~p~~~~-q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~ 381 (398)
T 4fzr_A 306 --HHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGV-EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAE 381 (398)
T ss_dssp --ECCCHHHHHHHHHTTCCEEECCCSGG-GHHHHHHHHHTTSEE-ECC-------CHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --ecCCHHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEE-ecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34567999999999999999865321 222335566667755 5432 6788999999999999999999888877
Q ss_pred hcccCCCCChHHHHHHHHH
Q 002431 873 VRLTCPLFDTARWVKNLER 891 (922)
Q Consensus 873 ~~~~~~~~~~~~~~~~~e~ 891 (922)
.. ...++++.++.+|+
T Consensus 382 ~~---~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 382 MA---TLPTPADIVRLIEQ 397 (398)
T ss_dssp HT---TSCCHHHHHHHHTC
T ss_pred HH---cCCCHHHHHHHHhc
Confidence 54 33788888887764
No 190
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.32 E-value=9.6e-12 Score=113.77 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=90.5
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 002431 333 VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (922)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (922)
..+.++..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
|.++...|++++|+..|+++++++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888877
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.32 E-value=9.7e-13 Score=147.27 Aligned_cols=143 Identities=14% Similarity=0.174 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHHHHHH
Q 002431 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------------ADGLVNRGNTY 382 (922)
Q Consensus 318 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~ 382 (922)
+++++|+..|++++...|.....+..+|..+.+.|++++|+..|+++++++|.+ ..+++++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666666666666666666666666666655 56777777777
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccCChhhHh
Q 002431 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD 460 (922)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 460 (922)
.++|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++.++..++...++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777776666555444
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.32 E-value=1.2e-12 Score=146.45 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------------AECYGNMANAWK 78 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~ 78 (922)
++++|+..++..+...|.....+..+|.+++..|+|++|+..|+++++.+|.+ ..+++.+|.+|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666667777777777777777777776666665 344455555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002431 79 EKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (922)
+.|++++|+..|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555544445555555544444444443
No 193
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=9.8e-12 Score=110.67 Aligned_cols=102 Identities=21% Similarity=0.128 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (922)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 002431 114 KGRLNEAAQCCRQALALNPLLV 135 (922)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~ 135 (922)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877654
No 194
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=4.6e-11 Score=105.54 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=91.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (922)
...+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
..|++++|...|+++++.+|+++.++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8888888888888888888888777766544
No 195
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=2.6e-11 Score=110.82 Aligned_cols=105 Identities=19% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (922)
+|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
.++...|++++|+..|+++++.+|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777766655
No 196
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.30 E-value=2.2e-11 Score=109.44 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+.++..+|..+++.|+|++|+..|+++++.+|+++.++..+|.+|...|++++|++.|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666655443 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNP 132 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p 132 (922)
.+|.++...|++++|++.|++++...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 555555566666666666666655554
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=2.5e-11 Score=106.22 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=98.8
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--cHHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT--MAEAHAN 411 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 411 (922)
+|++...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhcCCCCH
Q 002431 412 LASAYKDS-GHVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 412 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 440 (922)
+|.++... |++++|+++++++++..|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999988764
No 198
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.29 E-value=8.9e-11 Score=103.67 Aligned_cols=112 Identities=22% Similarity=0.303 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (922)
+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002431 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (922)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (922)
..|++++|...++++++.+|++..++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666555555555444
No 199
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.29 E-value=1e-11 Score=117.45 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI------------------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
.+...|..+.+.|++++|+..|+++++. +|.+..++.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666666777777777777777666 5666788999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 002431 402 RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (922)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (922)
+|+++.+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999999999999999988733
No 200
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=9e-11 Score=105.89 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=68.4
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (922)
++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45566666666666666666666666666655 566666666666666666666666666666666 556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002431 76 AWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (922)
Q Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (922)
++...|++++|+..|+++++..|++..+......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 6666666666666666666666665554444333
No 201
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.27 E-value=4.1e-11 Score=117.96 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=105.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL------EPRFAECYGNMANAWKEKGD 82 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 82 (922)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888888655554433356778888888888888888888888888873 33456677888888888888
Q ss_pred HHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcC
Q 002431 83 IDLAIRYYLVAIEL---RPN----FADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LL----VDAHSNLGNLMKAQG 149 (922)
Q Consensus 83 ~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g 149 (922)
+++|+..++++++. .++ ...++..+|.++...|++++|+..+++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888888776 332 244677778888888888888888877775421 11 123456666666666
Q ss_pred CHHHHHHHHHHHHhh
Q 002431 150 LVQEAYSCYLEALRI 164 (922)
Q Consensus 150 ~~~~A~~~~~~al~~ 164 (922)
++++|...++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
No 202
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8e-11 Score=109.05 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (922)
.+.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556667777777778888888888888888877776 777888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (922)
.+|.++...|++++|+..|+++++++|+++.++..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888888777766655443
No 203
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=1.9e-12 Score=145.48 Aligned_cols=137 Identities=15% Similarity=0.309 Sum_probs=110.6
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYK 383 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 383 (922)
+..+..+|..+.+.|++++|+..|+++++.+|++..++..+|.+|.++|++++|++.++++++++|.++.+++.+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCCH
Q 002431 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASA--YKDSGHVEAAIKSYK-----------QALLLRPDFP 440 (922)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~ 440 (922)
.+|++++|++.|+++++.+|++..++..++.+ +.+.|++++|++.++ ++++..|++.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 88999999999999988888888888888887 788888889998888 7777776653
No 204
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.27 E-value=1.2e-10 Score=128.56 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
++..+|+.++++..+....++....+.++..|-..++++|.+.. .+.+. .+ +++|.|.|+++.. .++..
T Consensus 229 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~------~~-~~~v~~~~~~~~~---~ll~~ 297 (402)
T 3ia7_A 229 PDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD-PAVLG------PL-PPNVEAHQWIPFH---SVLAH 297 (402)
T ss_dssp TTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC-GGGGC------SC-CTTEEEESCCCHH---HHHTT
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC-hhhhC------CC-CCcEEEecCCCHH---HHHhh
Confidence 44567888898887777777777666677777444445565433 22222 24 5899999998866 45677
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+|+++. .+|+.|++|||++|+|+|+.+.........+..+...|..- .+.. +.+++.+.+.+|++|++.++++
T Consensus 298 ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~~~~ll~~~~~~~~~ 373 (402)
T 3ia7_A 298 ARACLT---HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS-VLRPDQLEPASIREAVERLAADSAVRERV 373 (402)
T ss_dssp EEEEEE---CCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEE-ECCGGGCSHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEE---CCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEE-EccCCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 999983 34568889999999999987652222334456677778765 5543 7899999999999999998888
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
++..++.. .....++.++.+++.+..
T Consensus 374 ~~~~~~~~---~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 374 RRMQRDIL---SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHH---TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hCChHHHHHHHHHHHHhh
Confidence 77666543 236788888888887753
No 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.26 E-value=2.9e-11 Score=109.92 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-------FA-----ECYGNMANAWKEKGDIDLAIRYYLVAIEL---- 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 96 (922)
...+...|..++..|+|++|+..|+++++.+|+ +. .+|..+|.++...|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 455677777778888888888888888877777 22 26666666666666666666666666666
Q ss_pred ---CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002431 97 ---RPNFADAW----SNLASAYMRKGRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 97 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 134 (922)
+|++..+| +.+|.++..+|++++|+..|+++++++|++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 66665555 666666666666666666666665555543
No 206
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=4.3e-11 Score=117.84 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=97.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc------CCCCchhhhhHHHHHHHcCCHH
Q 002431 282 DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV------TTGLSAPFNNLAVIYKQQGNYA 355 (922)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~ 355 (922)
..|++++|.+.++......+....++..+|.++...|++++|...+++++.. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3445555555333322211233445555555555555555555555555542 2233455667777777777777
Q ss_pred HHHHHHHHHHcc---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc----HHHHHHHHHHHHhcCCH
Q 002431 356 DAISCYNEVLRI---DPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP--TM----AEAHANLASAYKDSGHV 422 (922)
Q Consensus 356 ~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 422 (922)
+|+..++++++. .+++ ..++..+|.++...|++++|+..++++++..+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777777766 3322 34677888888888888888888888876531 11 34567888999999999
Q ss_pred HHHHHHHHHHHhcC
Q 002431 423 EAAIKSYKQALLLR 436 (922)
Q Consensus 423 ~~A~~~~~~al~~~ 436 (922)
++|.+.+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888763
No 207
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=2.5e-11 Score=114.77 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-HHHHHH
Q 002431 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA-EAHANL 412 (922)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 412 (922)
.|.+..++.++|.+|...|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5666778899999999999999999999999999999999999999999999999999999999999999988 667777
Q ss_pred HHHHHhcCC
Q 002431 413 ASAYKDSGH 421 (922)
Q Consensus 413 a~~~~~~g~ 421 (922)
..+..+.++
T Consensus 139 ~~~~~~~~~ 147 (162)
T 3rkv_A 139 KIVTERRAE 147 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655443
No 208
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-10 Score=107.81 Aligned_cols=117 Identities=23% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+|.+...++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35567777777777777777777777777777777776 677777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
.+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777777777666665554
No 209
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.25 E-value=1.5e-10 Score=104.43 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 002431 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLA 108 (922)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 108 (922)
+++.+|.+++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 466777888888888888888888888777776 677788888888888888888888888887777 77778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002431 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147 (922)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 147 (922)
.++...|++++|+..|+++++..|++..+......+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 888888888888888888887777777665555444433
No 210
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.24 E-value=9.2e-11 Score=130.07 Aligned_cols=134 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCCc------eEEcC-CCCcH------HHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeeecCCcch
Q 002431 759 RAYAVAQGVQPDQ------IIFTD-VAMKQ------EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (922)
Q Consensus 759 ~~~~~~~g~~~~r------v~f~~-~~~~~------~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~~~~~~~ 824 (922)
...+++.|+. ++ |+|.| +.+.. ++..+|+.+|+||.||.|+| |+|.+|||+||+||||.....+.
T Consensus 476 l~~~r~l~L~-N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~ 554 (725)
T 3nb0_A 476 LNKIRQVQLF-NSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFG 554 (725)
T ss_dssp HHHHHHHTCC-CCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHH
T ss_pred HHHHHhcCCC-CCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChh
Confidence 3344566763 33 67776 55543 57888999999999999999 99999999999999976654332
Q ss_pred hhhHHHHHHhcC-----CCCcccc----CCHHHHHHHHHH----Hh-cCHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 002431 825 TRVAGSLCLATG-----LGEEMIV----NSMKEYEERAVS----LA-LDRQKLQALTNKLKSVRLTCPLFDTARWVKNLE 890 (922)
Q Consensus 825 ~r~~~~~~~~~g-----~~~~~i~----~~~~~~~~~~~~----l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 890 (922)
.-|. ...+ -.+.+|. .++++.++.+.+ +. .|+..+..++++.++.. ..|+++.++++++
T Consensus 555 d~V~----dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A---~~FSWe~iA~~Yl 627 (725)
T 3nb0_A 555 SYME----DLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS---DLLDWKRMGLEYV 627 (725)
T ss_dssp HHHH----TTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG---GGGBHHHHHHHHH
T ss_pred hhhh----ccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhCCHHHHHHHHH
Confidence 2111 0000 1221342 255555544443 33 37888899998887654 3599999999999
Q ss_pred HHHHHHHHHH
Q 002431 891 RSYFKMWSLH 900 (922)
Q Consensus 891 ~~y~~~~~~~ 900 (922)
++|+.++.+.
T Consensus 628 ~~Ye~aL~~~ 637 (725)
T 3nb0_A 628 KARQLALRRG 637 (725)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998643
No 211
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.23 E-value=1.6e-11 Score=137.80 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=88.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
++.+|..+++.|+|++|++.|+++++.+|.+..++..+|.++..+|++++|++.++++++.+|+++.+++.+|.+|...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 002431 82 DIDLAIRYYLVAIELRPNFADAWSNLASA--YMRKGRLNEAAQCCR 125 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 125 (922)
++++|++.|+++++.+|++..++..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777777777777777666 666777777777777
No 212
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.21 E-value=4.2e-10 Score=124.73 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=116.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEE-ecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
++..+|+.++++..+....++....+.++..| .++++ +|.++. .+.+. .+ +++|.|.|+++..++ +.
T Consensus 245 ~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~-~~~l~------~~-~~~v~~~~~~~~~~l---l~ 312 (415)
T 3rsc_A 245 DDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD-PAALG------DL-PPNVEAHRWVPHVKV---LE 312 (415)
T ss_dssp SCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC-GGGGC------CC-CTTEEEESCCCHHHH---HH
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC-hHHhc------CC-CCcEEEEecCCHHHH---Hh
Confidence 44567888999887777777777777777777 55554 565433 22221 35 579999999887644 45
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+++. .+|..|++|||++|+|+|+.+-.. .....+..+...|... .+.. +.+++.+.+.++++|++.++.
T Consensus 313 ~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 387 (415)
T 3rsc_A 313 QATVCVT---HGGMGTLMEALYWGRPLVVVPQSF-DVQPMARRVDQLGLGA-VLPGEKADGDTLLAAVGAVAADPALLAR 387 (415)
T ss_dssp HEEEEEE---SCCHHHHHHHHHTTCCEEECCCSG-GGHHHHHHHHHHTCEE-ECCGGGCCHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCEEEE---CCcHHHHHHHHHhCCCEEEeCCcc-hHHHHHHHHHHcCCEE-EcccCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 5999984 355688999999999999876422 2223345666667765 4543 789999999999999999888
Q ss_pred HHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 002431 866 LTNKLKSVRLTCPLFDTARWVKNLERSYFK 895 (922)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~ 895 (922)
+++..++... ....++.++.+++.+..
T Consensus 388 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 388 VEAMRGHVRR---AGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHH---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHhhc
Confidence 8776655432 36778888888877643
No 213
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.21 E-value=1.1e-11 Score=132.62 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (922)
+.....+..+|..+...|++++|+..|+++++..|++.. +...+++.++...+. ..+++++|.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~ 238 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence 344667888888888888888888888888888876541 222333444433332 237889999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-hcCCHHHH
Q 002431 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK-DSGHVEAA 425 (922)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A 425 (922)
+|.++|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998844 56778889
Q ss_pred HHHHHHHHhcCCCCHH
Q 002431 426 IKSYKQALLLRPDFPE 441 (922)
Q Consensus 426 ~~~~~~al~~~p~~~~ 441 (922)
...|++++...|+++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999988754
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=3e-11 Score=109.51 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=77.0
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Q 002431 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV----------TDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (922)
+.+.+++|++.++++++++|+++++++++|.++..++++ ++|+..|+++++++|++..+++++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777777777654 5888888888888888888888888888877
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 420 G-----------HVEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 420 g-----------~~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
| ++++|+++|+++++++|++.....+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4 8999999999999999998655443
No 215
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=9.7e-11 Score=102.36 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=78.3
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 002431 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN--FADAWSN 106 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 106 (922)
+|++..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777 7777777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 002431 107 LASAYMRK-GRLNEAAQCCRQALALNPLL 134 (922)
Q Consensus 107 la~~~~~~-g~~~~A~~~~~~~l~~~p~~ 134 (922)
++.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777777766653
No 216
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=8.8e-10 Score=123.01 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=138.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRT-----------------DNLLLLGAIYYQLHDYDMCIARNEEALRLEP 64 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 64 (922)
.+..|..+.+.|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.++++..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998877542 3577788888888888888888888776544
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 002431 65 RF------AECYGNMANAWKEKGDIDLAIRYYLVAIELR------PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL-- 130 (922)
Q Consensus 65 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 130 (922)
.. ..+...++.++...|++++|+.++++++... +....++..+|.++...|++++|...+++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 32 2344556667777788888888887777642 223567777788888888888888888777654
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 131 ----NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ---PTF----AIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (922)
Q Consensus 131 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (922)
.+....++..++.++...|++++|...+++++... +.. ...+..++.++...+++++|...|.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22344567777777777777777777777776642 111 23455666666677777777777776655
No 217
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.18 E-value=2e-10 Score=103.56 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------ADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 105 (922)
+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45566666666666777777777777666666666666666666666667777776666666665544 56666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (922)
.+|.++...|++++|+..|+++++..| +......++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666666666666666666666666665 4555555554443
No 218
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.17 E-value=2.3e-09 Score=119.33 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=116.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEE-EEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 710 PEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 710 ~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+++.+++.++++..+.....+....+.++..|+.++ +++|.++. .+.++ .+ +++|.|.|+++.. .+|.
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~-~~~l~------~~-~~~v~~~~~~~~~---~~l~ 298 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT-PAELG------EL-PDNVEVHDWVPQL---AILR 298 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C-GGGGC------SC-CTTEEEESSCCHH---HHHT
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC-hHHhc------cC-CCCeEEEecCCHH---HHhh
Confidence 345678889998775566666666666666566776 56777653 22221 35 4799999998865 4578
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc-C--CHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-N--SMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~-~--~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+|+. .+|++|++|||++|+|+|+.+-... ....+..+...|..- ++. . |.+++.+++.+++.|++.+++
T Consensus 299 ~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~~-q~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 373 (430)
T 2iyf_A 299 QADLFVT---HAGAGGSQEGLATATPMIAVPQAVD-QFGNADMLQGLGVAR-KLATEEATADLLRETALALVDDPEVARR 373 (430)
T ss_dssp TCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEE-ECCCC-CCHHHHHHHHHHHHHCHHHHHH
T ss_pred ccCEEEE---CCCccHHHHHHHhCCCEEECCCccc-hHHHHHHHHHcCCEE-EcCCCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 8999985 3567899999999999998865321 111234455566644 443 2 789999999999999999888
Q ss_pred HHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHH
Q 002431 866 LTNKLKSVRLTCPLFDTARWVKNLERSYFKMWSL 899 (922)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~e~~y~~~~~~ 899 (922)
+++..++.... ++.+..++.+++.+++...+
T Consensus 374 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~ 404 (430)
T 2iyf_A 374 LRRIQAEMAQE---GGTRRAADLIEAELPARHER 404 (430)
T ss_dssp HHHHHHHHHHH---CHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHhhccccc
Confidence 88877665432 67888999998888766543
No 219
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.17 E-value=5e-10 Score=123.23 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=170.1
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-------------
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM------------- 599 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 599 (922)
..+.|||.+++.....|- .-+.++.+.+-+.+.||.+++. . ..+.+...+..++.+..-
T Consensus 17 ~~~~MrIl~~~~~~~Ghv--~~~~~La~~L~~~GheV~v~~~-~-----~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 3oti_A 17 EGRHMRVLFVSSPGIGHL--FPLIQLAWGFRTAGHDVLIAVA-E-----HADRAAAAGLEVVDVAPDYSAVKVFEQVAKD 88 (398)
T ss_dssp --CCCEEEEECCSSHHHH--GGGHHHHHHHHHTTCEEEEEES-S-----CHHHHHTTTCEEEESSTTCCHHHHHHHHHHH
T ss_pred hhhcCEEEEEcCCCcchH--hHHHHHHHHHHHCCCEEEEecc-c-----hHHHHHhCCCeeEecCCccCHHHHhhhcccC
Confidence 345689999997543332 3455777777777899999886 2 234455555556655421
Q ss_pred -----------------------------CHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhc-CCCceEEeccccCCCC
Q 002431 600 -----------------------------SSDMIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTT 649 (922)
Q Consensus 600 -----------------------------~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-~~apvq~~~~g~~~t~ 649 (922)
....+.+.+++.++|++|- + +......+.+. ...|+..+.++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~-d--~~~~~~~~aA~~~giP~v~~~~~~~~~~ 165 (398)
T 3oti_A 89 NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVY-E--QGATVGLLAADRAGVPAVQRNQSAWRTR 165 (398)
T ss_dssp CHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEE-E--TTCHHHHHHHHHHTCCEEEECCTTCCCT
T ss_pred CccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-C--chhhHHHHHHHHcCCCEEEEeccCCCcc
Confidence 1246788889999998863 1 11111123332 3468877766643221
Q ss_pred CC-----CcccEEEecCccCCcCccCCCccceeecCCccccCC-Cccc-cccCCCCCCCCCcCCCC-CCCCcEEEEecCC
Q 002431 650 GA-----SYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVND-YKQK-NMDVLDPNCQPKRSDYG-LPEDKFIFACFNQ 721 (922)
Q Consensus 650 g~-----~~~d~~~~d~~~~~~~~~~~~~e~~~~lp~~~~~~~-~~~~-~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~ 721 (922)
.. ..++.++.. +..+.... .-.+...|....... .... ..+.+.......+..+. .++..+|+.++++
T Consensus 166 ~~~~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~G~ 241 (398)
T 3oti_A 166 GMHRSIASFLTDLMDK-HQVSLPEP---VATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAITMGT 241 (398)
T ss_dssp THHHHHHTTCHHHHHH-TTCCCCCC---SEEECSSCGGGGTTSCCCSBCCCCCCCCCCEECCSSCCCCCSSCEEEECCTT
T ss_pred chhhHHHHHHHHHHHH-cCCCCCCC---CeEEEeCCHHHCCCCCCCCCCccccCCCCCcCCchhhhcCCCCCEEEEEcCC
Confidence 11 111111111 10000000 000111111111000 0000 00000000111222222 2344578888887
Q ss_pred CC---CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCC
Q 002431 722 LY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL 798 (922)
Q Consensus 722 ~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~ 798 (922)
.. |....+.++.. .+++. +.+++++++++. .+.+. ++ +++|.|.|+++..+++ ..+|+|+.
T Consensus 242 ~~~~~~~~~~~~~~~~-~l~~~-~~~~v~~~g~~~-~~~l~------~~-~~~v~~~~~~~~~~ll---~~ad~~v~--- 305 (398)
T 3oti_A 242 IELQAFGIGAVEPIIA-AAGEV-DADFVLALGDLD-ISPLG------TL-PRNVRAVGWTPLHTLL---RTCTAVVH--- 305 (398)
T ss_dssp THHHHHCGGGHHHHHH-HHHTS-SSEEEEECTTSC-CGGGC------SC-CTTEEEESSCCHHHHH---TTCSEEEE---
T ss_pred CccccCcHHHHHHHHH-HHHcC-CCEEEEEECCcC-hhhhc------cC-CCcEEEEccCCHHHHH---hhCCEEEE---
Confidence 73 34434433333 34444 477777766543 22221 45 5899999998655554 56999992
Q ss_pred CCChhHHHHHHHcCCCeeeecCCcchhhhHH--HHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002431 799 CNAHTTGTDILWAGLPMITLPLEKMATRVAG--SLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSV 873 (922)
Q Consensus 799 ~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~--~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~~~~~~~ 873 (922)
.+|++|++|||++|+|+|+.+-..-. ...+ ..+...|..- .+.. +.+.+. ++++|++.++++++..++.
T Consensus 306 ~~G~~t~~Eal~~G~P~v~~p~~~dq-~~~a~~~~~~~~g~g~-~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~ 379 (398)
T 3oti_A 306 HGGGGTVMTAIDAGIPQLLAPDPRDQ-FQHTAREAVSRRGIGL-VSTSDKVDADLLR----RLIGDESLRTAAREVREEM 379 (398)
T ss_dssp CCCHHHHHHHHHHTCCEEECCCTTCC-SSCTTHHHHHHHTSEE-ECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEEcCCCchh-HHHHHHHHHHHCCCEE-eeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHH
Confidence 46678999999999999987542111 1112 3445556654 4432 344433 8888999999988877775
Q ss_pred cccCCCCChHHHHHHHHHHH
Q 002431 874 RLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 874 ~~~~~~~~~~~~~~~~e~~y 893 (922)
.. ...+++.++.+|+..
T Consensus 380 ~~---~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 380 VA---LPTPAETVRRIVERI 396 (398)
T ss_dssp HT---SCCHHHHHHHHHHHH
T ss_pred Hh---CCCHHHHHHHHHHHh
Confidence 42 378888888888764
No 220
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.17 E-value=2.1e-11 Score=130.42 Aligned_cols=156 Identities=16% Similarity=0.091 Sum_probs=82.7
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
.....+..+|..++..|++++|+..|+++++..|++.. +...|++.++...+. ..++..+|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34567788888888888888888888888888876541 112233333333221 1367777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL-FMESGDLNRAL 189 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 189 (922)
+.+.|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777776 33445666777
Q ss_pred HHHHHHHhcCCCCH
Q 002431 190 QYYKEAVKLKPTFP 203 (922)
Q Consensus 190 ~~~~~~l~~~p~~~ 203 (922)
..|.+++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 77777777776654
No 221
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.16 E-value=5e-12 Score=136.59 Aligned_cols=327 Identities=11% Similarity=0.033 Sum_probs=189.0
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccC-----ceEECCCCC--------HH
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-----HFVDVSAMS--------SD 602 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~ 602 (922)
-++|.+|.+ .-|-.--+.++++.+++. ||..+..++..-+..+.+.+...+. ...+..+-+ ..
T Consensus 9 ~~~~~~v~G---tRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T 4hwg_A 9 MLKVMTIVG---TRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIE 84 (385)
T ss_dssp CCEEEEEEC---SHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHH
T ss_pred hhheeEEEE---cCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHH
Confidence 467777764 456656777888887765 9999999887533234443333221 222222212 24
Q ss_pred HHHHHHHhCCCeEEEcCCCcCCCCchhhhh-cCCCceEEeccccCCCCC---CCc-cc----EEEecCccCCcCccC---
Q 002431 603 MIAKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYMGFPGTTG---ASY-ID----YLVTDEFVSPLRYAH--- 670 (922)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~-~~~apvq~~~~g~~~t~g---~~~-~d----~~~~d~~~~~~~~~~--- 670 (922)
.+.+.+++.++|+++-..+.+.... .+.+ .+--||....-|. .++ +|. +- ..++|.+++|.+...
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv~h~eagl--rs~~~~~pee~nR~~~~~~a~~~~~~te~~~~~l 161 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGN--RCFDQRVPEEINRKIIDHISDVNITLTEHARRYL 161 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCEEEESCCC--CCSCTTSTHHHHHHHHHHHCSEEEESSHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCEEEEeCCC--ccccccCcHHHHHHHHHhhhceeecCCHHHHHHH
Confidence 5788889999999954433221111 1222 2334764332221 121 111 00 124455666655311
Q ss_pred ----CCccceeecCCccccCCCccccccC-CCCCCCCCcCCCCCCCCcEEEEecCCCC-----CCCHHHHHHHHHHHhhC
Q 002431 671 ----IYSEKLVHVPHCYFVNDYKQKNMDV-LDPNCQPKRSDYGLPEDKFIFACFNQLY-----KMDPEIFNTWCNILRRV 740 (922)
Q Consensus 671 ----~~~e~~~~lp~~~~~~~~~~~~~~~-~~~~~~~~r~~~~l~~~~~~~~~~~~~~-----K~~~~~~~~~~~il~~~ 740 (922)
.-.+++....+..+... ... ........|+++|++++.+++++.+|.. |..+.+++++.++.++.
T Consensus 162 ~~~G~~~~~I~vtGnp~~D~~-----~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~ 236 (385)
T 4hwg_A 162 IAEGLPAELTFKSGSHMPEVL-----DRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY 236 (385)
T ss_dssp HHTTCCGGGEEECCCSHHHHH-----HHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcCcEEEECCchHHHH-----HHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC
Confidence 11234444433221100 000 0011234678899987777777777643 55678999999987765
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHc-C-CC-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeee
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQ-G-VQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT 817 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~-g-~~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~ 817 (922)
+..+++.. +|. +++.+++. | +. .++|.|.+..++.++..+++.+|+++..+ || .+.||+++|+|||+
T Consensus 237 -~~~vv~p~-~p~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~Pvv~ 306 (385)
T 4hwg_A 237 -NFLIIFST-HPR----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS---GT-ITEEASILNLPALN 306 (385)
T ss_dssp -CCEEEEEE-CHH----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCCEEE
T ss_pred -CeEEEEEC-ChH----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCCEEE
Confidence 66665543 332 45555555 5 32 36899999888889999999999999544 44 46999999999999
Q ss_pred ecCCc-chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002431 818 LPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 818 ~~~~~-~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
.+..+ ....+. .|-.- ++..|.++.++.+.+|.+|++.++.+++...... ......++.++.++..+
T Consensus 307 ~~~~ter~e~v~------~G~~~-lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 307 IREAHERPEGMD------AGTLI-MSGFKAERVLQAVKTITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp CSSSCSCTHHHH------HTCCE-ECCSSHHHHHHHHHHHHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred cCCCccchhhhh------cCceE-EcCCCHHHHHHHHHHHHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 86643 222221 25433 5556999999999999999887665544332210 11245566666666544
No 222
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=4.2e-11 Score=105.96 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 351 QGNYADAISCYNEVLRI---DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+|++++|+..|+++++. +|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 466677777888888888888888888888888888877888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHH
Q 002431 428 SYKQALLLRPDFPEAT 443 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~ 443 (922)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888877776654
No 223
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.16 E-value=1.4e-10 Score=104.67 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-------HHHHHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM-------AEAHANL 412 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 412 (922)
.+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..+++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555554443 4555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
|.++...|++++|++.|+++++..| ++.....+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 5555555555555555555555555 344444333
No 224
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=1.9e-10 Score=124.32 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 350 (922)
..+..+|..+...|++++|+..|+++++..+..+ +....++.....|.+..++.++|.+|.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555322110 0001122223455556666777777777
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777766666665543
No 225
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.9e-09 Score=120.22 Aligned_cols=200 Identities=10% Similarity=0.034 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----------------AECYGNMANAWKEKGDIDLAIRYYLVAIE 95 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 95 (922)
|.+....|..+...|+|++|++.|.++++..+.. ..++..+|.+|...|++++|.+++.++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777888999999999999999999987753 23578899999999999999999998887
Q ss_pred cCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 96 LRPNF------ADAWSNLASAYMRKGRLNEAAQCCRQALALN------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 96 ~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
..+.. ..+...++.++...|++++|+.++++++... +....++..+|.++...|++++|...+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 64432 1244566777777888999999988887652 22356778888889999999999888888876
Q ss_pred h------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 164 I------QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTF----PDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 164 ~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
. .+....++..++.+|...|++++|...+++++... +.. ...+..+|.++...+++++|...|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 23446678888888888888888888888887653 222 2356677777888888888888888877
Q ss_pred hh
Q 002431 231 QT 232 (922)
Q Consensus 231 ~~ 232 (922)
+.
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 226
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=3.7e-10 Score=122.05 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALR----------------LEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL 96 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (922)
...+..+|..++..|++++|+..|+++++ .+|.+..++..+|.+|.+.|++++|+.+++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45577788888888888888888888887 33334444444444444444444444444444444
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002431 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154 (922)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 154 (922)
+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444433
No 227
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.13 E-value=7.5e-11 Score=104.33 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 12 SGSYKQALEHSNSVYER---NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 88 (922)
.|++++|+..|+++++. +|++..+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777776 466677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCcHHHH
Q 002431 89 YYLVAIELRPNFADAW 104 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~ 104 (922)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666544
No 228
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.12 E-value=1.6e-10 Score=104.76 Aligned_cols=93 Identities=26% Similarity=0.468 Sum_probs=72.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002431 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDY----------DMCIARNEEALRLEPRFAECYGNMANAWK 78 (922)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 78 (922)
.-+.+.|++|++.++++++.+|+++++++.+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34567788889999998888898888888888888888765 47778888888888887777888887777
Q ss_pred HcC-----------CHHHHHHHHHHHHhcCCCcH
Q 002431 79 EKG-----------DIDLAIRYYLVAIELRPNFA 101 (922)
Q Consensus 79 ~~g-----------~~~~A~~~~~~al~~~p~~~ 101 (922)
..| ++++|+++|+++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 764 66777777777777777654
No 229
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.09 E-value=2.5e-09 Score=115.40 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=109.8
Q ss_pred cCCCCCCCCcEEEEecC-CC--CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 704 RSDYGLPEDKFIFACFN-QL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 704 r~~~~l~~~~~~~~~~~-~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
+...+++++.+++..++ +. .+++..+.+++.++.....-..+++.|.+ ..+.+.+...+.++ ++.+.|+++
T Consensus 171 ~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~--~~~~~~~~~~~~~~---~~~v~~f~~- 244 (365)
T 3s2u_A 171 HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQ--HAEITAERYRTVAV---EADVAPFIS- 244 (365)
T ss_dssp TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTT--THHHHHHHHHHTTC---CCEEESCCS-
T ss_pred hhhcccCCCCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcc--ccccccceeccccc---ccccccchh-
Confidence 44556665555444433 22 34555555555544333222233344433 25566777777766 466678754
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc---hhhhHHHHHHhcCCCCccccC---CHHHHHHHHH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIVN---SMKEYEERAV 854 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~---~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~ 854 (922)
+...+|..+|+++. -.|++|+.|+|++|+|+|..+-+.. ....-+..+...|... ++.. |++++.+.+.
T Consensus 245 -dm~~~l~~aDlvI~---raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~-~l~~~~~~~~~L~~~i~ 319 (365)
T 3s2u_A 245 -DMAAAYAWADLVIC---RAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGR-LLPQKSTGAAELAAQLS 319 (365)
T ss_dssp -CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHH
T ss_pred -hhhhhhccceEEEe---cCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEE-EeecCCCCHHHHHHHHH
Confidence 44455788999994 3578999999999999987653321 2233356677778755 5542 5789999999
Q ss_pred HHhcCHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHH
Q 002431 855 SLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 855 ~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
+|+.|++.+++|++++++.. .....++.++.++++
T Consensus 320 ~ll~d~~~~~~m~~~a~~~~---~~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 320 EVLMHPETLRSMADQARSLA---KPEATRTVVDACLEV 354 (365)
T ss_dssp HHHHCTHHHHHHHHHHHHTC---CTTHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHH
Confidence 99999999999999998853 223455555555554
No 230
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.08 E-value=4.9e-10 Score=105.31 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CcHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP------TMAE 407 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~ 407 (922)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45556666666666666666666666543221 44667777777777888888777777776531 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002431 408 AHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (922)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (922)
++..++.++...|++++|.+.+++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888877644
No 231
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.00 E-value=2.7e-09 Score=100.19 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------c
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN------F 100 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 100 (922)
..++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4456667777777777777777777776654321 235666666666666666666666666654322 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPL------LVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (922)
..++..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|...+++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 335555566666666666666666655543211 12233344444444444444444444443
No 232
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.97 E-value=4.4e-08 Score=109.88 Aligned_cols=180 Identities=12% Similarity=0.034 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHhHHHHHHHcCC---------hhHHHHHHHHHHhcC-CCCchhh
Q 002431 273 YNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNM---------LPAAASYYKATLAVT-TGLSAPF 341 (922)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~---------~~~A~~~~~~a~~~~-~~~~~~~ 341 (922)
+..+...+.+.|+.++|+++|+++.+.+ ..+..+|+.+..++...+. .++|.++|+++.... ..+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445566666677777777776666543 2345556666655554433 567788888777654 4467788
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhc
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKDS 419 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 419 (922)
+.+...|.+.|+.++|.++|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+.. ..+..+|..+..+|.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 888888999999999999998887763 3467788888899999999999999999988764 33577899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 002431 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (922)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (922)
|+.++|.++++++.+..-.....+++.+....+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 999999999999998877766677766655443
No 233
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.91 E-value=6.3e-08 Score=105.82 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred CCcEEEEecCCCCC---------CCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcH
Q 002431 711 EDKFIFACFNQLYK---------MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (922)
Q Consensus 711 ~~~~~~~~~~~~~K---------~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~ 781 (922)
+..+++.++++... ....+++++ ... +.++++++.++. .+.+. ++ +++|.| |+.|..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al----~~~-~~~~~~~~g~~~-~~~l~------~~-~~~v~~-~~~~~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDL----VRW-DVELIVAAPDTV-AEALR------AE-VPQARV-GWTPLD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHH----HTT-TCEEEEECCHHH-HHHHH------HH-CTTSEE-ECCCHH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHH----hcC-CcEEEEEeCCCC-HHhhC------CC-CCceEE-cCCCHH
Confidence 34567888887543 233344433 333 466666543322 33332 24 578999 998754
Q ss_pred HHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhc
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLAL 858 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~ 858 (922)
+ ++..+|+|+.. +|++|++|||++|+|+|+.+-..-. ..-+..+...|..- .+. .+.+++.+++.+++.
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~dq-~~~a~~~~~~g~g~-~~~~~~~~~~~l~~~i~~ll~ 346 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGSVL-EAPARRVADYGAAI-ALLPGEDSTEAIADSCQELQA 346 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEE-ECCTTCCCHHHHHHHHHHHHH
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcccc-hHHHHHHHHCCCeE-ecCcCCCCHHHHHHHHHHHHc
Confidence 4 45789999953 5678999999999999988752111 12233445556544 443 278899999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 859 DRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 859 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
|++.++++++..++... .-..++.+..++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 347 KDTYARRAQDLSREISG---MPLPATVVTALEQLAH 379 (384)
T ss_dssp CHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence 99998888776665432 2367777777776543
No 234
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.5e-10 Score=96.61 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=66.5
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHHHH
Q 002431 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM------AEAHAN 411 (922)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 411 (922)
...+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 002431 412 LASAYKDSGHVEAAIKSYKQ 431 (922)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~ 431 (922)
++.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777766666554443
No 235
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=1e-08 Score=90.11 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 356 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCC
Q 002431 436 RPD 438 (922)
Q Consensus 436 ~p~ 438 (922)
.|+
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
No 236
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.87 E-value=8.7e-09 Score=90.52 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002431 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (922)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (922)
+|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777777777777777788888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 002431 402 RPT 404 (922)
Q Consensus 402 ~p~ 404 (922)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 237
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.86 E-value=2.6e-07 Score=103.55 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhC-CCcHHHH
Q 002431 104 WSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGL---------VQEAYSCYLEALRIQ-PTFAIAW 172 (922)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~ 172 (922)
+..+...+.+.|+.++|+++|+++.+.+ +.+..+|..+..++...+. .++|.++|+++.... ..+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555555555555555555543 2244444444444443322 344555555544431 2234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCChhHHHhHHHHHHHc
Q 002431 173 SNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPNAIAFGNLASTYYER 249 (922)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~ 249 (922)
..+...|.+.|+.++|.++|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+. .|+..+|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 555555555555555555555554432 123445555555555555555555555555442 34455555555555555
Q ss_pred CChHHHHHHHHHHH
Q 002431 250 GQADMAILYYKQAI 263 (922)
Q Consensus 250 g~~~~A~~~~~~~l 263 (922)
|+.++|.++++++.
T Consensus 189 g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 189 KNADKVYKTLQRLR 202 (501)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555554
No 238
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.85 E-value=2.8e-08 Score=110.73 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=106.3
Q ss_pred CCcEEEEecCCC-------CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHH
Q 002431 711 EDKFIFACFNQL-------YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (922)
Q Consensus 711 ~~~~~~~~~~~~-------~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~ 783 (922)
+..+|+.++++. .|....+++++.+ . +.++++++.++. .+.+. ++ +++|.+.|++|..+
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~-~~~l~------~~-~~~v~~~~~~~~~~- 331 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ-LEGVA------NI-PDNVRTVGFVPMHA- 331 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT-TSSCS------SC-CSSEEECCSCCHHH-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc-hhhhc------cC-CCCEEEecCCCHHH-
Confidence 344666666654 2566667766543 2 466666554432 22121 45 57999999988644
Q ss_pred HHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCH
Q 002431 784 IRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDR 860 (922)
Q Consensus 784 ~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~ 860 (922)
++..+|+|+. .+|++|++|||++|+|+|+.+-..-. ..-+..+...|..- .+.. +.+++.+.+.++++|+
T Consensus 332 --ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~ 404 (441)
T 2yjn_A 332 --LLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWDT-GVRAQRTQEFGAGI-ALPVPELTPDQLRESVKRVLDDP 404 (441)
T ss_dssp --HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEE-ECCTTTCCHHHHHHHHHHHHHCH
T ss_pred --HHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCcccH-HHHHHHHHHcCCEE-EcccccCCHHHHHHHHHHHhcCH
Confidence 3688999995 46778999999999999988753211 12234455556654 4442 7889999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 861 QKLQALTNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
+.++++++..++.. .....++.++.+++...
T Consensus 405 ~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 405 AHRAGAARMRDDML---AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 99988877766543 23678888888887654
No 239
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.9e-09 Score=93.95 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF------ADAWSN 106 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 106 (922)
...++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566667777777777777777777777777666667777777777777777777777777666666 666666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 002431 107 LASAYMRKGRLNEAAQCC 124 (922)
Q Consensus 107 la~~~~~~g~~~~A~~~~ 124 (922)
++.++...|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666555554443
No 240
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.84 E-value=1.8e-08 Score=83.98 Aligned_cols=81 Identities=36% Similarity=0.601 Sum_probs=47.7
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44555555555556666666666666665565555666666666666666666666666666666555555555555544
Q ss_pred c
Q 002431 419 S 419 (922)
Q Consensus 419 ~ 419 (922)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
No 241
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3.1e-08 Score=82.47 Aligned_cols=83 Identities=41% Similarity=0.620 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (922)
+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHc
Q 002431 112 MRK 114 (922)
Q Consensus 112 ~~~ 114 (922)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 242
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.74 E-value=1.3e-08 Score=86.62 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=69.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (922)
...|..+...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888887 88888888888888888888888888888887766643 5
Q ss_pred CHHHHHHHHHHHHhcCCCCH
Q 002431 421 HVEAAIKSYKQALLLRPDFP 440 (922)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~ 440 (922)
.+.++...|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 66677777777777666553
No 243
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.72 E-value=2.8e-07 Score=87.25 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=91.8
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 712 ~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
..+++.++++.. ......+....+.++..+ .++++++.+.. . .++ +++|.|.|++|..+.+. +..+
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~-~---------~~~-~~~v~~~~~~~~~~~l~-~~~a 87 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNK-P---------DTL-GLNTRLYKWIPQNDLLG-HPKT 87 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSC-C---------TTC-CTTEEEESSCCHHHHHT-STTE
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcC-c---------ccC-CCcEEEecCCCHHHHhc-CCCc
Confidence 346788888764 333444444444445555 45555544432 1 145 57999999998876664 3889
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 867 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~~d~~~~~~~~ 867 (922)
|+|+. .+|++|++|||++|+|+|+.+-... ...-+..+...|..- ++.. +.+++.+++.++..|++.+++++
T Consensus 88 d~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 162 (170)
T 2o6l_A 88 RAFIT---HGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAV-RVDFNTMSSTDLLNALKRVINDPSYKENVM 162 (170)
T ss_dssp EEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEE-ECCTTTCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEE---cCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeE-EeccccCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 99995 4778999999999999998875311 122345566667644 4431 78899999999999987555443
No 244
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.7e-07 Score=85.08 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQD 394 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 394 (922)
++++|+.+|+++.+.... .+. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666666655422 222 666666666677777777777665 567777777777777 6777777777
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 002431 395 YIRAITIRPTMAEAHANLASAYKD----SGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 436 (922)
|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766 457777788888877 778888888888887763
No 245
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.71 E-value=2.1e-08 Score=85.16 Aligned_cols=89 Identities=16% Similarity=0.309 Sum_probs=57.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
+.+|..++..|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45666677777777777777777777776666 77777777777777777777777777777766655532 4
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 002431 82 DIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 82 ~~~~A~~~~~~al~~~p~ 99 (922)
.+.+++..|+++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 445555666555554443
No 246
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.69 E-value=5.3e-08 Score=82.84 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=53.2
Q ss_pred hCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002431 28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (922)
Q Consensus 28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (922)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++++.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35777777778888888888888888888888887777777777788888888888888888777776644
No 247
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.69 E-value=2.6e-08 Score=84.82 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (922)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (922)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|++.|++++++.|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367888888888888888888888888888888888888888888888888888888888888888887654
No 248
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=3.4e-07 Score=83.08 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 002431 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE----KGDIDLAIR 88 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 88 (922)
+++++|+..|+++.+... +.+. +|.+|...+..++|+++|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888877653 3344 788887777888888888888775 567788888888877 778888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 002431 89 YYLVAIELRPNFADAWSNLASAYMR----KGRLNEAAQCCRQALALN 131 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 131 (922)
+|+++.+. .++.+++.++.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888765 567777888888877 778888888888777664
No 249
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=8.6e-08 Score=106.42 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRI-----DPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTMA 406 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 406 (922)
+++++|.+|..+|++++|+.++++++++ .|++ ...++++|.+|..+|++++|+..|++++++ .|+++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3445555555555555555555555543 2333 234555555555555555555555555543 23332
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002431 407 ---EAHANLASAYKDSGHVEAAIKSYKQAL 433 (922)
Q Consensus 407 ---~~~~~la~~~~~~g~~~~A~~~~~~al 433 (922)
++...++.++..++.+++|...|+++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555555555555555555554
No 250
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.63 E-value=5.6e-07 Score=98.85 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=99.5
Q ss_pred CCcEEEEecCCCC--CCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.++++.. +.....+..+.+.+...+.-.+|..+.+.. . ....+ +++|.+.+++|..+.+ .
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~-~-------~~~~~-~~~v~~~~~~p~~~lL---~ 303 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL-A-------LLGEL-PANVRVVEWIPLGALL---E 303 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC-C-------CCCCC-CTTEEEECCCCHHHHH---T
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc-c-------ccccC-CCCEEEEeecCHHHHh---h
Confidence 4457788887653 333344555555566666555554443321 0 01234 6899999999866655 6
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
.+|+|+ ..+|.+|+.|||++|||+|+.+-..- ...-+..+...|..- ..++.+...+++.++++|++.|++.++
T Consensus 304 ~~~~~v---~h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g~--~l~~~~~~~~al~~lL~d~~~r~~a~~ 377 (400)
T 4amg_A 304 TCDAII---HHGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIGF--DAEAGSLGAEQCRRLLDDAGLREAALR 377 (400)
T ss_dssp TCSEEE---ECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEE--ECCTTTCSHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhee---ccCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCEE--EcCCCCchHHHHHHHHcCHHHHHHHHH
Confidence 699988 36778999999999999998864321 112234455567643 233334445677788999998877554
Q ss_pred HHHhhcccCCCCChHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
- ++.+...+ .+...|+.+|++
T Consensus 378 l-~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 378 V-RQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp H-HHHHHTSC--CHHHHHHHHHHH
T ss_pred H-HHHHHcCC--CHHHHHHHHHHh
Confidence 3 33333333 677888888764
No 251
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=98.61 E-value=7.4e-08 Score=101.49 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=104.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
.+.++++.++++.|. ..+..+ .|+.+|+|+|+|+. + .+ . +|.|.|++|.++....++.+
T Consensus 176 ~~~~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~-~----------~l-~-nV~f~G~~~~~el~~~l~~~ 234 (339)
T 3rhz_A 176 GLKREIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNV-E----------LP-Q-NVHKINYRPDEQLLMEMSQG 234 (339)
T ss_dssp EEEEEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCC-C----------CC-T-TEEEEECCCHHHHHHHHHTE
T ss_pred CCCcEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCcc-c----------Cc-C-CEEEeCCCCHHHHHHHHHhC
Confidence 345778888888873 222221 48899999999976 2 34 3 89999999999999999777
Q ss_pred cEEecC-CC-------CCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002431 791 DLFLDT-PL-------CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (922)
Q Consensus 791 dv~l~~-~~-------~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~ 862 (922)
|+.|-+ .+ ++-+..+.|+|++|+|||+......+.-+.. -|. + +++++.+++++.+..+ +++.
T Consensus 235 ~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~-----~~~-G-~~~~~~~e~~~~i~~l--~~~~ 305 (339)
T 3rhz_A 235 GFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN-----NGL-G-WIVKDVEEAIMKVKNV--NEDE 305 (339)
T ss_dssp EEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH-----HTC-E-EEESSHHHHHHHHHHC--CHHH
T ss_pred CEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh-----CCe-E-EEeCCHHHHHHHHHHh--CHHH
Confidence 777654 11 2347889999999999998776655544432 233 4 6778899999888887 5778
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHH
Q 002431 863 LQALTNKLKSVRLTCPLFDTARWVKN 888 (922)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (922)
+++|+++.++... .++...|+++
T Consensus 306 ~~~m~~na~~~a~---~~~~~~f~k~ 328 (339)
T 3rhz_A 306 YIELVKNVRSFNP---ILRKGFFTRR 328 (339)
T ss_dssp HHHHHHHHHHHTH---HHHTTHHHHH
T ss_pred HHHHHHHHHHHHH---HhhccHHHHH
Confidence 8999999887632 2555555544
No 252
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.61 E-value=1.6e-07 Score=104.29 Aligned_cols=123 Identities=10% Similarity=-0.034 Sum_probs=87.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---cHHHHH
Q 002431 42 IYYQLHDYDMCIARNEEALRL-----EPR---FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPN---FADAWS 105 (922)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~ 105 (922)
.+..+|+|++|+..++++++. .++ ...++..+|.+|..+|+|++|+.+++++++. .|+ -...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677788887777777754 223 3566777888888888888888888887765 233 344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 106 NLASAYMRKGRLNEAAQCCRQALAL-----NPLLVD---AHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (922)
++|.+|..+|++++|+.+|++++++ +|+++. ....++.++..++.+++|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888764 455544 4567777777888888888888777654
No 253
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.60 E-value=2.1e-06 Score=89.20 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=72.4
Q ss_pred HHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 364 VLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 364 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..+ .
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~--t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN--T 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH--H
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC--h
Confidence 34567899999999999999999999999999999999975 67888999999999999999999999999999875 3
Q ss_pred HHHHHhhc
Q 002431 444 CNLLHTLQ 451 (922)
Q Consensus 444 ~~l~~~~~ 451 (922)
+.+...+.
T Consensus 346 ~~~~~~l~ 353 (372)
T 3ly7_A 346 LYWIENGI 353 (372)
T ss_dssp HHHHHHSS
T ss_pred HHHHhCce
Confidence 44444333
No 254
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.59 E-value=1.8e-06 Score=89.77 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002431 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (922)
+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3445555555554444445555555555555555432 3344445555555555555555555555555543
No 255
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.54 E-value=2.5e-06 Score=84.59 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002431 131 NPLLVDAHSNLGNLMKA-----QG------LVQEAYSCYLEALRIQPT--FAIAWSNLAGLFMES-----GDLNRALQYY 192 (922)
Q Consensus 131 ~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~ 192 (922)
+|++++.++..|.+... .| ...+|...++++++++|+ +..+|..+|.+|... |+.++|.++|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 45566655555544322 12 245666777777777777 455777777777764 7777777777
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC
Q 002431 193 KEAVKLKPTF-PDAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 193 ~~~l~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~ 235 (922)
+++++++|+. ...++.++..++.. |+++++.+.+++++...|.
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 7777777753 77777777777663 7777777777777775554
No 256
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.50 E-value=3.7e-06 Score=83.47 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=79.2
Q ss_pred hCCCcHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChHHHHHH
Q 002431 164 IQPTFAIAWSNLAGLFME-----SG------DLNRALQYYKEAVKLKPT--FPDAYLNLGNVYKAL-----GMPQEAIMC 225 (922)
Q Consensus 164 ~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~ 225 (922)
.+|++...++-.|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 466666665555544332 12 256788888888888888 555888888888884 888888888
Q ss_pred HHHHHhhCCC--hhHHHhHHHHHHHc-CChHHHHHHHHHHHhcCCC
Q 002431 226 YQRAVQTRPN--AIAFGNLASTYYER-GQADMAILYYKQAIGCDPR 268 (922)
Q Consensus 226 ~~~~~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~ 268 (922)
|+++++++|+ ...++..+..++.. |+++++..++++++..+|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888884 77888888888774 8888888888888877665
No 257
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.45 E-value=3.2e-06 Score=93.54 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=109.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEE-EEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~ 789 (922)
+..+|+.++++........+....+.++. ++.++ +.+|.+.. .+.+ ..+ +++|.+.|++|..+ ++..
T Consensus 254 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~-~~~~------~~~-~~~v~~~~~~~~~~---~l~~ 321 (424)
T 2iya_A 254 GRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVD-PADL------GEV-PPNVEVHQWVPQLD---ILTK 321 (424)
T ss_dssp SCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSC-GGGG------CSC-CTTEEEESSCCHHH---HHTT
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCC-hHHh------ccC-CCCeEEecCCCHHH---HHhh
Confidence 34578888887765555555554444544 44555 55665432 2222 135 58899999988663 4678
Q ss_pred CcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 790 ~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
+|+|+. .+|.+|++||+++|+|+|+.+-..- ...-+..+...|..- .+. -+.+++.+.+.++.+|++.++++
T Consensus 322 ~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 396 (424)
T 2iya_A 322 ASAFIT---HAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGR-HIPRDQVTAEKLREAVLAVASDPGVAERL 396 (424)
T ss_dssp CSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEE-ECCGGGCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEE---CCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEE-EcCcCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 999984 4677999999999999999876421 122344566667754 443 28899999999999999888777
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHH
Q 002431 867 TNKLKSVRLTCPLFDTARWVKNLERSYF 894 (922)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~e~~y~ 894 (922)
++..++... ....++.++.+++..+
T Consensus 397 ~~~~~~~~~---~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 397 AAVRQEIRE---AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCcHHHHHHHHHHHHh
Confidence 666554321 2456677777776643
No 258
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.6e-06 Score=77.61 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYIRAITIR-P-TMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
....+.+.|.+.++.++.+.++.+.+|+++.+.+ +.++++..++..++.+ | ++.+.++.||..|.+.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3566778888888888999999999999999988 6779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHH
Q 002431 428 SYKQALLLRPDFPEAT 443 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~ 443 (922)
+++++++.+|++..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999987664
No 259
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.40 E-value=1.7e-06 Score=71.71 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002431 368 DPLAADGLVNRGNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
+|++++.+..+|.++...++ .++|...++++++.+|+++.++..+|..+.+.|++++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876665 6899999999999999999999999999999999999999999999988883
No 260
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=2.6e-06 Score=76.21 Aligned_cols=94 Identities=12% Similarity=-0.024 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH---DYDMCIARNEEALRLE-P-RFAECYGNMANAWKEKGDIDLAIR 88 (922)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 88 (922)
....+.+.|.+.++.++.+.++.+.+|.++.+.+ +.++++.+++++++.+ | +..++++.+|..+++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556677777777777778888888888888877 5668888888888877 6 457788888888888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHH
Q 002431 89 YYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 89 ~~~~al~~~p~~~~~~~~l 107 (922)
+++++++.+|++.++....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 8888888888877665443
No 261
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.30 E-value=3.2e-06 Score=69.98 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=48.6
Q ss_pred CCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 29 NPLRTDNLLLLGAIYYQLHD---YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..+++.|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46666777777776655444 567777777777777777777777777777777777777777777766665
No 262
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.22 E-value=1.1e-05 Score=88.92 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=98.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcE
Q 002431 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADL 792 (922)
Q Consensus 713 ~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv 792 (922)
.++|.++++.. .....++...+.++..+.-.+|.+|.+.. . ..++ +++|.+.|++|..+. +..+|+
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~--------~~~~-~~~v~~~~~~~~~~~---l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL-V--------LPDD-GADCFAIGEVNHQVL---FGRVAA 304 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC-C--------CSSC-GGGEEECSSCCHHHH---GGGSSE
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCcc-c--------ccCC-CCCEEEeCcCChHHH---HhhCCE
Confidence 36777777654 33444444444444455334444465432 1 1245 478999999986554 588999
Q ss_pred EecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002431 793 FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTNK 869 (922)
Q Consensus 793 ~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~~ 869 (922)
|+. .+|.+|++|||++|+|+|+.+-..-. ..-+..+...|..- .+. -+.+++.+++.++ .|++.++++++.
T Consensus 305 ~v~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~ 378 (415)
T 1iir_A 305 VIH---HGGAGTTHVAARAGAPQILLPQMADQ-PYYAGRVAELGVGV-AHDGPIPTFDSLSAALATA-LTPETHARATAV 378 (415)
T ss_dssp EEE---CCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHH
T ss_pred EEe---CCChhHHHHHHHcCCCEEECCCCCcc-HHHHHHHHHCCCcc-cCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 994 46778999999999999998753211 12234455567654 443 2788999999999 999888887776
Q ss_pred HHhhcccCCCCChHHHHHHHHHH
Q 002431 870 LKSVRLTCPLFDTARWVKNLERS 892 (922)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~e~~ 892 (922)
.++.. ..-..++.++.+|..
T Consensus 379 ~~~~~---~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 379 AGTIR---TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHHSC---SCHHHHHHHHHHHHH
T ss_pred HHHHh---hcChHHHHHHHHHHH
Confidence 65532 223445555555554
No 263
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=1.4e-05 Score=68.03 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-------PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
++.-.+.+|..++..|++..|+.+|++|++.. +....++..||.++.++|++++|+.++++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556777888888888888888888887752 34577888888888888888888888888888888888776
Q ss_pred HHHH
Q 002431 444 CNLL 447 (922)
Q Consensus 444 ~~l~ 447 (922)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6653
No 264
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.17 E-value=3.7e-06 Score=91.64 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=76.2
Q ss_pred HcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHH
Q 002431 350 QQGNYADAISCYNEVLRI-----DPLAA---DGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTM---AEAHANLA 413 (922)
Q Consensus 350 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la 413 (922)
..|++++|+.++++++++ .|+++ .++.++|.+|..+|++++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888899988888874 45554 47888999999999999999999999875 3444 45788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHH
Q 002431 414 SAYKDSGHVEAAIKSYKQALLL-----RPDFPEAT 443 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 443 (922)
.+|..+|++++|+.+|++++++ +|++|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999885 67777554
No 265
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.04 E-value=2.1e-05 Score=85.99 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCc---HHHH
Q 002431 346 VIYKQQGNYADAISCYNEVLRI-----DPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITI-----RPTM---AEAH 409 (922)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~ 409 (922)
.-+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|++++|+.+++++++. .|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455788999999999999875 3455 457888999999999999999999999875 3444 4578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHH
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLL-----RPDFPEATC 444 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 444 (922)
++||.+|..+|++++|+.+|++++++ +|++|.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999985 788876543
No 266
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.03 E-value=2.8e-05 Score=85.55 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=88.7
Q ss_pred cEEEEecCCCCC-CCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 713 KFIFACFNQLYK-MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 713 ~~~~~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
.+||.++++... .....++...+.++..+--.+|..|.+.. . + ..+ +++|.+.+++|..+ ++..+|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~--~------~~~-~~~v~~~~~~~~~~---ll~~~d 304 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V--L------PDD-RDDCFAIDEVNFQA---LFRRVA 304 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C--C------SCC-CTTEEEESSCCHHH---HGGGSS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc-c--c------cCC-CCCEEEeccCChHH---HhccCC
Confidence 467778887642 22233333333344444223343465432 1 1 245 57899999988544 358899
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+. .+|.+|++||+++|+|+|+.+-..-. ..-+..+...|..- .+. .+.+++.+++.++ .|++.++++++
T Consensus 305 ~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~dQ-~~na~~l~~~g~g~-~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~ 378 (416)
T 1rrv_A 305 AVIH---HGSAGTEHVATRAGVPQLVIPRNTDQ-PYFAGRVAALGIGV-AHDGPTPTFESLSAALTTV-LAPETRARAEA 378 (416)
T ss_dssp EEEE---CCCHHHHHHHHHHTCCEEECCCSBTH-HHHHHHHHHHTSEE-ECSSSCCCHHHHHHHHHHH-TSHHHHHHHHH
T ss_pred EEEe---cCChhHHHHHHHcCCCEEEccCCCCc-HHHHHHHHHCCCcc-CCCCCCCCHHHHHHHHHHh-hCHHHHHHHHH
Confidence 9995 56788999999999999998753211 12233455556654 443 3788999999999 99987777665
Q ss_pred HHHh
Q 002431 869 KLKS 872 (922)
Q Consensus 869 ~~~~ 872 (922)
..++
T Consensus 379 ~~~~ 382 (416)
T 1rrv_A 379 VAGM 382 (416)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 4433
No 267
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.03 E-value=4.5e-05 Score=64.88 Aligned_cols=76 Identities=26% Similarity=0.284 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLE-------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
+...+.+|..++..++|..|+..|+++++.. +....++..+|.++.+.|++++|+.+++++++..|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 234555666666666666666666666666666666655544
Q ss_pred HHH
Q 002431 106 NLA 108 (922)
Q Consensus 106 ~la 108 (922)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 268
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.01 E-value=3.5e-05 Score=83.92 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 002431 80 KGDIDLAIRYYLVAIEL-----RPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALAL-----NPLLV---DAHSNLGN 143 (922)
Q Consensus 80 ~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~ 143 (922)
.|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. .|+++ ..+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555555543 2332 234455555555555555555555555543 23332 24555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 002431 144 LMKAQGLVQEAYSCYLEALRI 164 (922)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~ 164 (922)
+|..+|++++|+..|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 666666666666666655553
No 269
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.93 E-value=0.00013 Score=79.78 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=98.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCc
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~d 791 (922)
..+|+.++++... ...+++...+.+++.+ .++++...+.. .+ ..+. .++|.+.+++|..+.+ ..+|
T Consensus 221 ~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~-~~vv~~~g~~~-~~-------~~~~-~~~v~~~~~~~~~~ll---~~~d 286 (404)
T 3h4t_A 221 SPPVYVGFGSGPA-PAEAARVAIEAVRAQG-RRVVLSSGWAG-LG-------RIDE-GDDCLVVGEVNHQVLF---GRVA 286 (404)
T ss_dssp SCCEEECCTTSCC-CTTHHHHHHHHHHHTT-CCEEEECTTTT-CC-------CSSC-CTTEEEESSCCHHHHG---GGSS
T ss_pred CCeEEEECCCCCC-cHHHHHHHHHHHHhCC-CEEEEEeCCcc-cc-------cccC-CCCEEEecCCCHHHHH---hhCc
Confidence 3467778887654 3344444444455554 44444332221 11 1244 5789999998865544 6799
Q ss_pred EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 792 v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
+|+ ..+|..|+.||+++|+|+|..+-..- ...-+..+...|... .+. -+.+++.+.+.++.+ ++.++++++
T Consensus 287 ~~v---~~gG~~t~~Eal~~GvP~v~~p~~~d-Q~~na~~~~~~G~g~-~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~ 360 (404)
T 3h4t_A 287 AVV---HHGGAGTTTAVTRAGAPQVVVPQKAD-QPYYAGRVADLGVGV-AHDGPTPTVESLSAALATALT-PGIRARAAA 360 (404)
T ss_dssp EEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEE-ECSSSSCCHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred EEE---ECCcHHHHHHHHHcCCCEEEcCCccc-HHHHHHHHHHCCCEe-ccCcCCCCHHHHHHHHHHHhC-HHHHHHHHH
Confidence 998 34556899999999999998864221 122234556667755 443 278999999999998 877777665
Q ss_pred HHHhhcccCCCCChHHHHHHHHHHH
Q 002431 869 KLKSVRLTCPLFDTARWVKNLERSY 893 (922)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~e~~y 893 (922)
..+. + .. -..++.++.+|..+
T Consensus 361 ~~~~-~--~~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 361 VAGT-I--RT-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHTT-C--CC-CHHHHHHHHHHHHH
T ss_pred HHHH-H--hh-hHHHHHHHHHHHHH
Confidence 5443 2 12 34556666666654
No 270
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.90 E-value=4.2e-05 Score=83.55 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=38.6
Q ss_pred HHcCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 002431 78 KEKGDIDLAIRYYLVAIEL-----RPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALAL-----NPLLV---DAHSNL 141 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~l 141 (922)
..+|++++|+..++++++. .|++ ..++.+++.+|..+|++++|+.++++++.. .|+++ ..++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3444555555555555443 1222 233444455555555555555555554432 12222 234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 002431 142 GNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~ 163 (922)
|.+|..+|++++|+..|+++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 271
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.81 E-value=0.0002 Score=61.38 Aligned_cols=96 Identities=11% Similarity=-0.043 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHH
Q 002431 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDM---CIARNEEALRLE-P-RFAECYGNMANAWKEKGDIDLA 86 (922)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A 86 (922)
......+.+.|.+....++.+.++.+.+|.++.+..+... ++.+++..++.+ | ..-++++.+|..+++.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566667777766677778888888888888776655 888888877766 4 4567778888888888888888
Q ss_pred HHHHHHHHhcCCCcHHHHHHH
Q 002431 87 IRYYLVAIELRPNFADAWSNL 107 (922)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~l 107 (922)
+++++.+++..|++.++....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 888888888888777665443
No 272
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.79 E-value=5.4e-05 Score=88.00 Aligned_cols=107 Identities=6% Similarity=-0.144 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Q 002431 339 APFNNLAVIYKQQGNYADAISCYNEVLRI----DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLA 413 (922)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 413 (922)
.+|+.+...|++.|+.++|.++|.++.+. -..+..+|+.+...|++.|+.++|.++|+++.+.. ..+..+|+.+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45777777777777777777777665432 23456667777777777777777777777776653 23466677777
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 002431 414 SAYKDSGH-VEAAIKSYKQALLLRPDFPEATCN 445 (922)
Q Consensus 414 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 445 (922)
.++++.|+ .++|.++|+++.+.+-......++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 77777766 356667777777766665555554
No 273
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.77 E-value=0.00015 Score=62.19 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHhcCCHHHHH
Q 002431 352 GNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTD---AIQDYIRAITIR-P-TMAEAHANLASAYKDSGHVEAAI 426 (922)
Q Consensus 352 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 426 (922)
.....+.+.|.+....++.+.++.+.+|+++.+..+..+ ++..++..++.+ | ..-+..+.||..+.+.|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566677777777778888889999999988877666 888888888876 4 45678899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHH
Q 002431 427 KSYKQALLLRPDFPEAT 443 (922)
Q Consensus 427 ~~~~~al~~~p~~~~~~ 443 (922)
++++.+++..|++..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 99999999999987664
No 274
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.74 E-value=9.7e-05 Score=79.00 Aligned_cols=119 Identities=8% Similarity=-0.057 Sum_probs=73.1
Q ss_pred CcCCCCCCCC--cEEEEecCC--CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcC--CCCCceEE
Q 002431 703 KRSDYGLPED--KFIFACFNQ--LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQG--VQPDQIIF 774 (922)
Q Consensus 703 ~r~~~~l~~~--~~~~~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g--~~~~rv~f 774 (922)
.++.+|++.+ .+++.-..+ ..|.-| .+.++...+.++ +.++++.|.+.. .+..++..+..+ ....-+.+
T Consensus 170 ~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e-~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 170 TCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp HHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG-HHHHHHHHTTSCHHHHTTEEEC
T ss_pred HHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh-HHHHHHHHHhhhhccccceEec
Confidence 3456777533 233433332 457765 555554444443 678888775433 444433332221 10123578
Q ss_pred cCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 775 TDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 775 ~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.|..+..+..++++.+|+++-.. + |+.-+ |.++|+|+|++-|.+...+.+
T Consensus 247 ~g~~sl~e~~ali~~a~l~I~~D--s-g~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 247 AGETQLDQAVILIAACKAIVTND--S-GLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp TTTSCHHHHHHHHHTSSEEEEES--S-HHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred cCcCCHHHHHHHHHhCCEEEecC--C-HHHHH-HHHcCCCEEEEECCCCccccC
Confidence 89888899999999999999543 3 33444 889999999998887766654
No 275
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.66 E-value=0.00028 Score=77.94 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+..+||.+++.........++...+-++..+--.+|.+|.... ..+...+.+ .+ .+++.+.++.|..+.+. ...+
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~--~~l~~~~~~-~~-~~~~~v~~w~pq~~vL~-h~~~ 344 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR--VHLPEGFLE-KT-RGYGMVVPWAPQAEVLA-HEAV 344 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG--GGSCTTHHH-HH-TTTEEEESCCCHHHHHT-STTE
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch--hhCCHHHHh-hc-CCceEEecCCCHHHHhc-CCcC
Confidence 4558888888776555566655555555545445677664321 111111111 12 36888889988765542 2268
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHhc-CCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT-GLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~-g~~~~~i~---~~~~~~~~~~~~l~~d~~~~~~~ 866 (922)
|+|+ ...|.+|++||+++|||+|+.+-..-. ..-+..+... |..- .+. -+.++..+.+.+++.|++ ...+
T Consensus 345 ~~fv---th~G~~S~~Eal~~GvP~i~~P~~~dQ-~~Na~~l~~~~g~g~-~l~~~~~~~~~l~~~i~~ll~~~~-~~~~ 418 (456)
T 2c1x_A 345 GAFV---THCGWNSLWESVAGGVPLICRPFFGDQ-RLNGRMVEDVLEIGV-RIEGGVFTKSGLMSCFDQILSQEK-GKKL 418 (456)
T ss_dssp EEEE---ECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEE-ECGGGSCCHHHHHHHHHHHHHSHH-HHHH
T ss_pred CEEE---ecCCcchHHHHHHhCceEEecCChhhH-HHHHHHHHHHhCeEE-EecCCCcCHHHHHHHHHHHHCCCc-HHHH
Confidence 8988 367899999999999999999864222 2344556665 7765 443 268888899999998874 3344
Q ss_pred HHHH
Q 002431 867 TNKL 870 (922)
Q Consensus 867 ~~~~ 870 (922)
|++.
T Consensus 419 r~~a 422 (456)
T 2c1x_A 419 RENL 422 (456)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 276
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.63 E-value=0.00095 Score=74.53 Aligned_cols=152 Identities=15% Similarity=0.191 Sum_probs=93.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-h-HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-G-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~-~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.+++.........+....+-+...+--.+|.+|.... + ...+...+.+ .+ ++++.+.++.|..+.+. ..
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~v~~~~pq~~~L~-h~ 370 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN-EI-ADRGLIASWCPQDKVLN-HP 370 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHH-HH-TTTEEEESCCCHHHHHT-ST
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHH-hc-CCCEEEEeecCHHHHhc-CC
Confidence 3457888888765445554555555566666556676663210 0 0001111111 13 47889999998765442 23
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHH-hcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHH
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV--NSMKEYEERAVSLALDRQKLQA 865 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~-~~g~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~ 865 (922)
.+|+|+ ..+|.+|++||+++|||+|+.+-..-. ..-+..+. ..|..- .+. -+.++..+.+.+++.|++ .+.
T Consensus 371 ~~~~~v---th~G~~s~~Eal~~GvP~i~~P~~~dQ-~~na~~~~~~~G~g~-~l~~~~~~~~l~~~i~~ll~~~~-~~~ 444 (482)
T 2pq6_A 371 SIGGFL---THCGWNSTTESICAGVPMLCWPFFADQ-PTDCRFICNEWEIGM-EIDTNVKREELAKLINEVIAGDK-GKK 444 (482)
T ss_dssp TEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTH-HHHHHHHHHTSCCEE-ECCSSCCHHHHHHHHHHHHTSHH-HHH
T ss_pred CCCEEE---ecCCcchHHHHHHcCCCEEecCcccch-HHHHHHHHHHhCEEE-EECCCCCHHHHHHHHHHHHcCCc-HHH
Confidence 455677 367899999999999999999764222 23334443 577765 443 278899999999999885 244
Q ss_pred HHHHHH
Q 002431 866 LTNKLK 871 (922)
Q Consensus 866 ~~~~~~ 871 (922)
+|++.+
T Consensus 445 ~r~~a~ 450 (482)
T 2pq6_A 445 MKQKAM 450 (482)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 277
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.62 E-value=0.00064 Score=74.33 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 711 ~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+..+||.+|+.........+.....-++..+--.+|.+|.+. .+.+-..+.+. + .+|+.+.++.|..+.+ ..+
T Consensus 272 ~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~--~~~lp~~~~~~-~-~~~~~vv~w~Pq~~vL---~h~ 344 (454)
T 3hbf_A 272 NSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP--KEKLPKGFLER-T-KTKGKIVAWAPQVEIL---KHS 344 (454)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH--HHHSCTTHHHH-T-TTTEEEESSCCHHHHH---HST
T ss_pred CCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhcCCHhHHhh-c-CCceEEEeeCCHHHHH---hhc
Confidence 456889999987777777777777777766666777777542 22222222211 3 4788888999876555 445
Q ss_pred c--EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHHHh-cCCCCcccc---CCHHHHHHHHHHHhcCH
Q 002431 791 D--LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLA-TGLGEEMIV---NSMKEYEERAVSLALDR 860 (922)
Q Consensus 791 d--v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~-~g~~~~~i~---~~~~~~~~~~~~l~~d~ 860 (922)
| +|+ ..+|.+|++||+++|||+|+.+-..- ...-+..+.. +|..- .+. -+.++..+.+.+++.|+
T Consensus 345 ~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~Gv-~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 345 SVGVFL---THSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEIGV-GVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp TEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCSEE-ECGGGSCCHHHHHHHHHHHHSSH
T ss_pred CcCeEE---ecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCeeE-EecCCCCCHHHHHHHHHHHHCCC
Confidence 5 666 46778999999999999999875321 2223344554 46654 343 36788888888998885
No 278
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.58 E-value=0.00099 Score=58.22 Aligned_cols=74 Identities=19% Similarity=0.026 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (922)
.|...+.. ...++.++|.+.|+.+++.....+.+|...|..-.++|+..+|.+++.+++.++|.+.......+.
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 34444433 455888899999999988877778889999999999999999999999999999988766544433
No 279
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.54 E-value=0.00063 Score=61.07 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=83.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCcHHH
Q 002431 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---------TDNLLLLGAIYYQLHDYDMCIARNEEALRLE---PRFAEC 69 (922)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 69 (922)
++...+.++..|.|+.|+-+.+.++....++ .+++..+|..++..++|..|...|+++++.. ++....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5677888999999999999888876543222 3478899999999999999999999987653 222211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002431 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (922)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (922)
...++. ..... .... .+.+.+..+.++.||.+.+++++|+..++.+-.. ...+.....+|.+|
T Consensus 103 ~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred cccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 111110 00000 0011 1335677888888888888888888887765222 24566777777665
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.48 E-value=0.24 Score=56.15 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=219.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHH---HHH
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMA---NAW 77 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la---~~~ 77 (922)
+..|...++.|++..+..+...+ ...|-.+. ..........+ ... .+...+...|+.+..-.... ..+
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~y--l~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPY--LEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHH--HHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHH--HHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 56778888999998777665543 33453222 22222222222 344 33444566777765443333 334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH--
Q 002431 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY-- 155 (922)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-- 155 (922)
.+.+++..-+.++.. .|.+...-..........|+..+|.....++.......+..+..+...+.+.|......
T Consensus 83 ~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 456777777665543 37778888888888889999888888888777666555555555555555444433221
Q ss_pred HHHHHHHhhCCCcHHHHHHHH-----------HHHHH-cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHH
Q 002431 156 SCYLEALRIQPTFAIAWSNLA-----------GLFME-SGDLNRALQYYKEAVKLKPTFP-DAYLNLGNVYKALGMPQEA 222 (922)
Q Consensus 156 ~~~~~al~~~p~~~~~~~~la-----------~~~~~-~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A 222 (922)
.-+..++.. ++......++ ..+.. ..+.......... ..+... ......+.......+.+.|
T Consensus 159 ~R~~~al~~--~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~rlar~d~~~A 233 (618)
T 1qsa_A 159 ERIRLAMKA--GNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART---TGATDFTRQMAAVAFASVARQDAENA 233 (618)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH---SCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc---cCCChhhHHHHHHHHHHHHhcCHHHH
Confidence 111122111 1111111111 11000 0111111111100 111111 1122223333344577888
Q ss_pred HHHHHHHHhhCC-C----hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 223 IMCYQRAVQTRP-N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (922)
Q Consensus 223 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 297 (922)
...+........ + ...+..++..+...+...++...+.+......++. .....+...+..|+++.|...++.+-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 234 RLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 888887754322 2 22233334344444545677777777665444433 33334444556799999999998765
Q ss_pred hhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCC--C---H
Q 002431 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL--A---A 372 (922)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~---~ 372 (922)
......+...+.+|..+...|+.++|..+|+++... . ..|-.++.. +.|..-. . ......+. . .
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~--~fYg~lAa~--~Lg~~~~-~----~~~~~~~~~~~~~~~ 381 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--R--GFYPMVAAQ--RIGEEYE-L----KIDKAPQNVDSALTQ 381 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--C--SHHHHHHHH--HTTCCCC-C----CCCCCCSCCCCHHHH
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--ChHHHHHHH--HcCCCCC-C----CCCCCChhHHhhhcc
Confidence 544456778899999999999999999999998752 2 222222221 2232000 0 00001110 0 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
......+..+...|....|...+.......+ ..-...++.+....|.+..++....+.
T Consensus 382 ~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 382 GPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1235567788899999999999888876532 344557788888999999888766543
No 281
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.46 E-value=0.0036 Score=69.21 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=92.0
Q ss_pred CCcEEEEecCCCC-CCCHHHHHHHHHHHhhCCCeEEEEecCC-hhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc
Q 002431 711 EDKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (922)
Q Consensus 711 ~~~~~~~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~ 788 (922)
+..+||.+++... ......+....+-++..+--.+|.+|.+ ....+.+.+.... .+++...++.|..+.+. ..
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~----~~~~~v~~w~pq~~vL~-h~ 349 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL----EGKGMICGWAPQVEVLA-HK 349 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH----HCSEEEESSCCHHHHHH-ST
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc----CCCEEEEccCCHHHHhC-CC
Confidence 4458888998776 6666666666666666555566777653 1001122222210 25778888888766542 24
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHH-HHhcCCCCccc---------cCCHHHHHHHHHHHhc
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSL-CLATGLGEEMI---------VNSMKEYEERAVSLAL 858 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~-~~~~g~~~~~i---------~~~~~~~~~~~~~l~~ 858 (922)
.+|+|+ ...|.+|++||+++|||+|+.+-..-.. .-+.. +...|..- .+ .-+.++..+.+.++++
T Consensus 350 ~~~~fv---th~G~~s~~Eal~~GvP~i~~P~~~dQ~-~Na~~lv~~~g~g~-~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 350 AIGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQ-LNAFRLVKEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp TEEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHH-HHHHHHHHTSCCEE-ESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred ccCeEE---ecCCchhHHHHHHcCCCeeeccchhhhH-HHHHHHHHHcCeEE-EEecccCCCCccccHHHHHHHHHHHHh
Confidence 788988 4678999999999999999998633332 23344 46777765 44 1267888888888886
Q ss_pred -CHHHHHH
Q 002431 859 -DRQKLQA 865 (922)
Q Consensus 859 -d~~~~~~ 865 (922)
+++.+++
T Consensus 425 ~~~~~r~~ 432 (463)
T 2acv_A 425 KDSIVHKK 432 (463)
T ss_dssp TTCTHHHH
T ss_pred ccHHHHHH
Confidence 3444443
No 282
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.43 E-value=0.0037 Score=54.66 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002431 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (922)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (922)
++.++|.+.|+.+++.+.....+|...+..-.++|+...|.+++.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44444444444444443333444444444444444444444444444444443
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.42 E-value=0.23 Score=58.12 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (922)
|.....|..++++.+.+.++|.+.++ .++....+.++..+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56667788888899999999888874 445556666666666543
No 284
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.40 E-value=0.0021 Score=74.98 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=87.0
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhc----CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHH
Q 002431 304 PQALTNLGNIYMEWNMLPAAASYYKATLAV----TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNR 378 (922)
Q Consensus 304 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 378 (922)
...++.+...|++.|+.++|..+|.++.+. ...+..+|+.+...|++.|+.++|.++|++|.+.. ..+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 457899999999999999999999886543 46688999999999999999999999999998764 4678889999
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHhhC
Q 002431 379 GNTYKEIGRV-TDAIQDYIRAITIR 402 (922)
Q Consensus 379 ~~~~~~~g~~-~~A~~~~~~al~~~ 402 (922)
..++++.|+. ++|.++|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999999985 78999999999875
No 285
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.37 E-value=0.27 Score=57.60 Aligned_cols=260 Identities=11% Similarity=0.028 Sum_probs=135.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------C---hhHHHhH
Q 002431 179 FMESGDLNRALQYYKEAVKLK-PTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRP--------N---AIAFGNL 242 (922)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~-p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------~---~~~~~~l 242 (922)
....|+.++++..+.+.+... .+++. +.+.+|.++... ..++...+...+.... . ..+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445677777777777665422 12222 444555554444 4567777777665432 1 1233455
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCCh
Q 002431 243 ASTYYERGQADMAILYYKQAIGCDPRFL--EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (922)
Q Consensus 243 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 320 (922)
|.++.-.++ +++.+.+..++..+.... .+-..+|.++...|+-+-...++..+.+...++..-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 555554444 456677777665333221 24456677777778776666666665553332222233444445567777
Q ss_pred hHHHHHHHHHHhcCCCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002431 321 PAAASYYKATLAVTTGLSAP----FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (922)
Q Consensus 321 ~~A~~~~~~a~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (922)
+.+..+.+.+.... ++.. -..+|..|...|+...-.+++..+.+-..++..-...+|..+...|+.+.+...+.
T Consensus 541 e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777766655432 2222 23456677788886555557776665332333333333334444555544444443
Q ss_pred HHHhhCCCcHHHHHHHHHHHHh--cCC-HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002431 397 RAITIRPTMAEAHANLASAYKD--SGH-VEAAIKSYKQALLLRPDFPEATCNLL 447 (922)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~--~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (922)
...+. .++.+.+..+.++-. .|+ ..+++..+.++.. +++ ..+..+.+
T Consensus 619 ~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d-~~Vrq~Ai 668 (963)
T 4ady_A 619 LLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPV-DFVRQAAM 668 (963)
T ss_dssp TGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSS-HHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCC-HHHHHHHH
Confidence 33322 234444443333332 332 3678888877753 443 33333333
No 286
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.14 E-value=0.00055 Score=72.65 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=72.4
Q ss_pred CCCCCCCc--EEEEecCC-CCCCCH--HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc
Q 002431 706 DYGLPEDK--FIFACFNQ-LYKMDP--EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (922)
Q Consensus 706 ~~~l~~~~--~~~~~~~~-~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~ 780 (922)
++|++.+. +++....+ ..|.-| .+.++...+.++ +..+++.|.+.. ++..++.....+ ..-+.+.|..+.
T Consensus 178 ~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e-~~~~~~i~~~~~--~~~~~l~g~~sl 252 (349)
T 3tov_A 178 SHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD-LEMVQPVVEQME--TKPIVATGKFQL 252 (349)
T ss_dssp HTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT-HHHHHHHHHTCS--SCCEECTTCCCH
T ss_pred HcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch-HHHHHHHHHhcc--cccEEeeCCCCH
Confidence 45675433 33333332 346543 344444444443 566777775533 555555555443 234788899899
Q ss_pred HHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
.+..++++.+|+++-. -+ |+.-+ |.++|+|+|++-|.+...+.|
T Consensus 253 ~e~~ali~~a~~~i~~--Ds-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 253 GPLAAAMNRCNLLITN--DS-GPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp HHHHHHHHTCSEEEEE--SS-HHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred HHHHHHHHhCCEEEEC--CC-CHHHH-HHhcCCCEEEEECCCCccccC
Confidence 9999999999999942 23 44445 889999999999988777654
No 287
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.10 E-value=0.007 Score=67.21 Aligned_cols=144 Identities=14% Similarity=0.136 Sum_probs=88.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChh-------------h-HHHHHHHHHHcCCCCCc-eEEcC
Q 002431 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------------G-EMRLRAYAVAQGVQPDQ-IIFTD 776 (922)
Q Consensus 712 ~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------------~-~~~l~~~~~~~g~~~~r-v~f~~ 776 (922)
..+||.+|+.........+....+-++..+.-.+|.++.+.. . ...+-.-+.+. + .+| ++..+
T Consensus 268 ~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~-~~~g~~v~~ 345 (480)
T 2vch_A 268 GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER-T-KKRGFVIPF 345 (480)
T ss_dssp TCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHH-T-TTTEEEEES
T ss_pred CceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHH-h-CCCeEEEeC
Confidence 458899999876666677766666677776666777764320 0 01111111111 2 133 45556
Q ss_pred CCCcHHHHHhccCCc--EEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhHHHHH-HhcCCCCcccc------CCHH
Q 002431 777 VAMKQEHIRRSSLAD--LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMK 847 (922)
Q Consensus 777 ~~~~~~~~~~~~~~d--v~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~~~~~-~~~g~~~~~i~------~~~~ 847 (922)
+.|..+.+ ...| +|| .++|.+|++||+++|||+|+++-..- ...-+..+ ...|+.- .+. -+.+
T Consensus 346 w~Pq~~vL---~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~~D-Q~~na~~l~~~~G~g~-~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQAQVL---AHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAE-QKMNAVLLSEDIRAAL-RPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHHHHH---HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTTCCEE-CCCCCTTSCCCHH
T ss_pred ccCHHHHh---CCCCcCeEE---ecccchhHHHHHHcCCCEEecccccc-chHHHHHHHHHhCeEE-EeecccCCccCHH
Confidence 88866555 4455 566 47789999999999999999986322 22233343 5667655 332 3678
Q ss_pred HHHHHHHHHhc---CHHHHHH
Q 002431 848 EYEERAVSLAL---DRQKLQA 865 (922)
Q Consensus 848 ~~~~~~~~l~~---d~~~~~~ 865 (922)
+..+++.+++. +++.+++
T Consensus 418 ~l~~av~~vl~~~~~~~~r~~ 438 (480)
T 2vch_A 418 EVARVVKGLMEGEEGKGVRNK 438 (480)
T ss_dssp HHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHH
Confidence 88888888887 4454443
No 288
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0037 Score=56.15 Aligned_cols=134 Identities=10% Similarity=-0.030 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCc
Q 002431 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---------AECYGNMANAWKEKGDIDLAIRYYLVAIELR---PNF 100 (922)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 100 (922)
..+++.-...++..|.|+.|+-....++....++ ..++..+|++++..++|..|...|+++++.. +++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778889999999999988876553222 3578899999999999999999999997652 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 002431 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (922)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (922)
......++. ..... .... .+.+.+..+.++.|+.+.+++++|+..++.+-.. ...+.+...||.+|
T Consensus 100 ~s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CCccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 211111110 00000 0111 2346678899999999999999999998764322 23455666677665
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.06 E-value=0.65 Score=52.58 Aligned_cols=356 Identities=12% Similarity=-0.026 Sum_probs=202.7
Q ss_pred HHHHHHhhCCCchHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002431 21 HSNSVYERNPLRTDNLLLLGAI---YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97 (922)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 97 (922)
.+...+..+|+.+..-...... +.+.+++..-+..+.. .|.+.......+.+....|+-.+|.....++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 3445556677776654444433 3456677776665543 47888888888888999999888888777776655
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-----
Q 002431 98 PNFADAWSNLASAYMRKGRLNEA--AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI----- 170 (922)
Q Consensus 98 p~~~~~~~~la~~~~~~g~~~~A--~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 170 (922)
...+.....+...+.+.|..... ..-+..++.. ++......++..+ ......-...+ .++..+|.+..
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~--~~~~~a~~l~~~l--~~~~~~~a~~~-~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA--GNTGLVTVLAGQM--PADYQTIASAI-ISLANNPNTVLTFART 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT--TCHHHHHHHHHTC--CGGGHHHHHHH-HHHHHCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHhC--CHHHHHHHHHH-HHHHhChHhHHHHHhc
Confidence 44455555555555555543332 2222222221 1222111111111 00010000001 11111222111
Q ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002431 171 --------AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDA----YLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (922)
Q Consensus 171 --------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (922)
....++.......+.+.|...+....+...-+... ...++.-+...+...++...+.+......+...
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH
Confidence 12223333444558889999998876544333332 222333333344366777888876665555444
Q ss_pred HHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcC
Q 002431 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWN 318 (922)
Q Consensus 239 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 318 (922)
....+......|+++.|...+..+-..........+.+|.++...|+.++|..+|+++.+ +. ..|-.++.. +.|
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~--~Lg 361 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQ--RIG 361 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHH--HTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHH--HcC
Confidence 444555566789999999999887654445677889999999999999999999999875 22 223333222 222
Q ss_pred ChhHHHHHHHHHHhcCCCCc-----hhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002431 319 MLPAAASYYKATLAVTTGLS-----APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (922)
Q Consensus 319 ~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (922)
....- . .....+... ..-...+..+...|....|...+..+.... +..-...++......|.++.++.
T Consensus 362 ~~~~~-~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 362 EEYEL-K----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp CCCCC-C----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCC-C----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHH
Confidence 21000 0 000011100 112345677889999999999998887642 34556677888889999999886
Q ss_pred HHHHH
Q 002431 394 DYIRA 398 (922)
Q Consensus 394 ~~~~a 398 (922)
...+.
T Consensus 435 ~~~~~ 439 (618)
T 1qsa_A 435 ATIAG 439 (618)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66543
No 290
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.93 E-value=0.017 Score=50.27 Aligned_cols=75 Identities=8% Similarity=-0.070 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 369 PLAADGLVNRGNTYKEIGRV---TDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 369 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
..+.++.+++++++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|+++.+.+++..|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56788999999999998754 5789999999998884 577899999999999999999999999999999987654
No 291
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.93 E-value=0.02 Score=49.78 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=53.6
Q ss_pred CCchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002431 30 PLRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (922)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (922)
..+.++.+.++.++.+..+. .+++.+++..++..|. .-++++.+|..+++.|+|++|.++.+.+++..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677777777777776654 4677777777776663 4567777777777777777777777777777777765543
Q ss_pred H
Q 002431 106 N 106 (922)
Q Consensus 106 ~ 106 (922)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 292
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.79 E-value=0.015 Score=49.93 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=57.5
Q ss_pred CchHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDY---DMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (922)
.++.+.+.+|.++.+..+. .+++.+++..++.+|. .-++++.+|..+++.|+|++|.++.+.+++..|++.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3577788888888777654 4678888888877773 46778888888888888888888888888888887766544
Q ss_pred H
Q 002431 107 L 107 (922)
Q Consensus 107 l 107 (922)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 293
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.74 E-value=0.013 Score=50.39 Aligned_cols=76 Identities=8% Similarity=-0.072 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 368 DPLAADGLVNRGNTYKEIGRV---TDAIQDYIRAITIRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
...++.+.+++++++.+..+. .+++..++..++.+|. .-+.++.||..+.+.|+|++|+++.+.+++..|++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345678889999999888654 4688889888888884 477889999999999999999999999999999987654
No 294
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.28 E-value=0.56 Score=41.64 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=104.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002431 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (922)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (922)
..++-.+|+.++-+-.-+. |..++....++..++-.|+|..++-.+.+ -+...+.+..+.||.+.++|.+|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566766654433332 33335556667777777777777766542 345666666777777777777777
Q ss_pred HHHHHHHhc-----------------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------
Q 002431 88 RYYLVAIEL-----------------RPNFAD-AWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDA------------ 137 (922)
Q Consensus 88 ~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------ 137 (922)
..++..++- +|.+.+ .+..+|..+.+.|+.++|+..+.......+--+.+
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~ 162 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQK 162 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcc
Confidence 777777732 122333 45566777777777777777777666554321111
Q ss_pred ------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002431 138 ------------------HSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA-WSNLAGLFMESGDLNRALQYYKEAVKL 198 (922)
Q Consensus 138 ------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (922)
+......+..... ...++-.+.-|.-... ....+..|...|-.++...+|....+.
T Consensus 163 ~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 163 RDKENVRQTGRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp C-----------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHhhhhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 0111111111110 2233333445654433 345677788899999999999998888
Q ss_pred CCC
Q 002431 199 KPT 201 (922)
Q Consensus 199 ~p~ 201 (922)
+|.
T Consensus 238 DP~ 240 (242)
T 3kae_A 238 DPM 240 (242)
T ss_dssp STT
T ss_pred CCC
Confidence 875
No 295
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.09 E-value=0.011 Score=62.20 Aligned_cols=105 Identities=13% Similarity=0.010 Sum_probs=64.5
Q ss_pred EEEEecCC-CCCCCHHHHHHHHHHHhhC--CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC
Q 002431 714 FIFACFNQ-LYKMDPEIFNTWCNILRRV--PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (922)
Q Consensus 714 ~~~~~~~~-~~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~ 790 (922)
+++...++ ..|.-| .+-|.++.+.. .+.++++.+.++...+..++... +. ..+.+.|..+-.+..++++.+
T Consensus 181 i~l~pga~~~~k~wp--~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~--~~--~~~~l~g~~sl~el~ali~~a 254 (326)
T 2gt1_A 181 AVFLHATTRDDKHWP--EEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAE--GF--AYVEVLPKMSLEGVARVLAGA 254 (326)
T ss_dssp EEEECCCSSGGGSCC--HHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHT--TC--TTEEECCCCCHHHHHHHHHTC
T ss_pred EEEEeCCCCccccCC--HHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHh--hC--CcccccCCCCHHHHHHHHHhC
Confidence 44443333 346544 24444444432 36677776445442333333332 23 246788988899999999999
Q ss_pred cEEecCCCCCChhHHHHHHHcCCCeeeecCCcchhhhH
Q 002431 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (922)
Q Consensus 791 dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~~r~~ 828 (922)
|+++-. -+ |+.-+ |-++|+|+|++-|.+-..+.|
T Consensus 255 ~l~I~~--DS-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 288 (326)
T 2gt1_A 255 KFVVSV--DT-GLSHL-TAALDRPNITVYGPTDPGLIG 288 (326)
T ss_dssp SEEEEE--SS-HHHHH-HHHTTCCEEEEESSSCHHHHC
T ss_pred CEEEec--CC-cHHHH-HHHcCCCEEEEECCCChhhcC
Confidence 999832 23 44455 667999999998887766654
No 296
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.42 Score=57.12 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=65.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002431 7 HQMYKSGSYKQALE-HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (922)
Q Consensus 7 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (922)
......+++++|.+ ++.. -+ +...+......+...|.+++|++..+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 4411 11 01223556666777888888776552 22222 234567888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
|.+..+. .++...|..+|..+.+.|+++.|+++|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8887543 355778888999999999999998888876
No 297
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.067 Score=61.61 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHH--Hhc-CCHHHHHHHHHHHHhc--------CCCc----------HHHHHHH
Q 002431 15 YKQALEHSNSVYERNPLRTDNLLLLGAIY--YQL-HDYDMCIARNEEALRL--------EPRF----------AECYGNM 73 (922)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l 73 (922)
++.|+.+|+++.+.+|.... ++..+.+. ... .+--+|+.++.+.++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 56777778877777775432 22222221 111 2234555555555431 1121 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (922)
+..+...|+++-|+++.++++...|.....|+.|+.+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 556666777777777777777777777777777777777777777777665544
No 298
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.64 E-value=0.4 Score=57.32 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 247 YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 247 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
...|++++|.+..+. .++...|..+|..+.+.++++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555444321 123345555555555555555555555543
No 299
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=95.61 E-value=0.11 Score=59.50 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCC--CCCcEEEEecCCCC--CCCHHH-HHHHHHHH--hhCC-----CeEEEEecCChhh-HH--H----HHHHHHHc
Q 002431 705 SDYGL--PEDKFIFACFNQLY--KMDPEI-FNTWCNIL--RRVP-----NSALWLLRFPAAG-EM--R----LRAYAVAQ 765 (922)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~~--K~~~~~-~~~~~~il--~~~p-----~~~l~~~~~~~~~-~~--~----l~~~~~~~ 765 (922)
++.|+ .++.+++|-+.|+. |...-. +....+++ +..| ...+++.|.+..+ .. . +...+...
T Consensus 540 ~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~i 619 (824)
T 2gj4_A 540 REYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVV 619 (824)
T ss_dssp HHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHh
Confidence 33454 35678888888874 987765 66666554 2454 3678888865321 22 2 33333322
Q ss_pred ----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecCC
Q 002431 766 ----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPLE 821 (922)
Q Consensus 766 ----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~~ 821 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.|+. +|. ||+-+=||.-|++.| |++|-
T Consensus 620 n~Dp~v-~~~lKVvFl~nYdvslA~~I--~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGa 684 (824)
T 2gj4_A 620 NHDPVV-GDRLRVIFLENYRVSLAEKV--IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp TTCTTT-GGGEEEEEETTCCHHHHHHH--GGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred ccCccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCc
Confidence 24 46 899887422 23334 899999999986 888 999999999998766 66553
No 300
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=95.55 E-value=0.11 Score=52.47 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=56.6
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
..++.|.+....+++++...+. .+|.+.+.++ +...+|..+|+++. .||+|+.|++++|+|+|..+-...
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~----~~v~v~~~~~--~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip~~~~ 255 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH----NNIRLFIDHE--NIAKLMNESNKLII----SASSLVNEALLLKANFKAICYVKN 255 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC----SSEEEEESCS--CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEECCSGG
T ss_pred EEEEECCCchHHHHHHHHHhhC----CCEEEEeCHH--HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEeCCCC
Confidence 3455676654467777766542 3688888754 45556889999996 356899999999999997654322
Q ss_pred hhhhHHHHHHhcCCCC
Q 002431 824 ATRVAGSLCLATGLGE 839 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~ 839 (922)
. ..-+..|...|...
T Consensus 256 Q-~~nA~~l~~~G~~~ 270 (282)
T 3hbm_A 256 Q-ESTATWLAKKGYEV 270 (282)
T ss_dssp G-HHHHHHHHHTTCEE
T ss_pred H-HHHHHHHHHCCCEE
Confidence 2 23445555556543
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.36 E-value=1.5 Score=46.31 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002431 174 NLAGLFMESGDLNRALQYYKEAVKLKPT--F----PDAYLNLGNVYKALGMPQEAIMCYQRAV 230 (922)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (922)
.++..|+..|+|.+|.+.+.++.+.-.. + .+++..-..+|...+++.++...+.++.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555555555555555554432111 1 1233444444555555555555554443
No 302
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.086 Score=60.70 Aligned_cols=59 Identities=17% Similarity=0.002 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
.+...+..+...|+++-|+++.++++...|.+-..|+.|+.+|..+|+++.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556777888999999999999999999999999999999999999999998766544
No 303
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.95 E-value=0.34 Score=47.43 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002431 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (922)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (922)
..+++.|+.++|++.....++.+|.|......+.+.++-.|+++.|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455666666666666666666666666666666666666666666666666666666654
No 304
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.82 E-value=4.8 Score=42.44 Aligned_cols=93 Identities=16% Similarity=0.011 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHH----HH
Q 002431 140 NLGNLMKAQGLVQEAYSCYLEALRIQP------TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTFPD----AY 206 (922)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~----~~ 206 (922)
.++..|...|++.+|.+.+.++.+.-. .-.+++.....+|...+++.++...+.++.... +.++. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566666677777777666666655311 112345555666777777777777776665432 12222 33
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHhh
Q 002431 207 LNLGNVYK-ALGMPQEAIMCYQRAVQT 232 (922)
Q Consensus 207 ~~l~~~~~-~~g~~~~A~~~~~~~~~~ 232 (922)
..-|..+. ..++|.+|...|-++++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 44556666 677777777777776543
No 305
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=94.65 E-value=0.36 Score=55.17 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=76.3
Q ss_pred cCCCCC--CCCcEEEEecCCC--CCCCHH-HHHHHHHHHh--hCC-----CeEEEEecCChhh-H--HHHHHHHHHc---
Q 002431 704 RSDYGL--PEDKFIFACFNQL--YKMDPE-IFNTWCNILR--RVP-----NSALWLLRFPAAG-E--MRLRAYAVAQ--- 765 (922)
Q Consensus 704 r~~~~l--~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~~~~~~~~~-~--~~l~~~~~~~--- 765 (922)
+++.|+ .++.+++|-+.|+ +|...- ++....++++ ..| ...+++.|.+..+ . ..+.+.+.+.
T Consensus 505 ~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 584 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADL 584 (796)
T ss_dssp HHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHH
Confidence 444555 4567888888887 499887 6777666653 443 3677777765322 2 2232323222
Q ss_pred -----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecC
Q 002431 766 -----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPL 820 (922)
Q Consensus 766 -----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~ 820 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.||. +|. ||+-+=+|.-|++.| |+.|
T Consensus 585 in~dp~~-~~~lKVvFl~nY~vslA~~I--~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG 649 (796)
T 2c4m_A 585 VNNDPEV-SPLLKVVFVENYNVSPAEHI--LPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDG 649 (796)
T ss_dssp HHTCTTT-TTTEEEEEETTCCHHHHHHH--GGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESST
T ss_pred hcccccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCC
Confidence 45 57 899987422 23334 899999999986 888 999999999999988 4444
No 306
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.49 E-value=2.6e-06 Score=89.34 Aligned_cols=366 Identities=13% Similarity=0.118 Sum_probs=215.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002431 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (922)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (922)
+.+.+|..+|.++...++..+|++.|-++ +++..+.....+..+.|++++-+.+++.+-+.. ..+..=..++.+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHH
Confidence 45778888898888888888888877443 445556666677778888888888887766542 223444566777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002431 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (922)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (922)
|.+.++..+-.+.+. .|+.. -....|.-++..|.|+.|.-+|..+ .-|..|+.++...|+|..|.+
T Consensus 126 yAk~~rL~elEefl~-----~~N~A-~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSS-CTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTT
T ss_pred HHhhCcHHHHHHHHc-----CCCcc-cHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHH
Confidence 778777654333221 23322 2345677788888888776665432 123456677777788877776
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002431 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (922)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (922)
..+++ +++.+|-....+....+.+.-|..+--.++-. ++ -+..+...|...|.+++-+.+++..+++..-..
T Consensus 192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-AD--ELEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhccc-HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 65544 55667777777777777777666555444422 21 122344556677888888888888887777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-C------CChHHHHhHHHHHHHcCChhHHHHHH---------------
Q 002431 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSL-Q-P------SHPQALTNLGNIYMEWNMLPAAASYY--------------- 327 (922)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p------~~~~~~~~la~~~~~~~~~~~A~~~~--------------- 327 (922)
..+..+|.+|.+- +.++-.++++..... + | +....|..+..+|.+-.+++.|....
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkd 342 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 342 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTT
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHH
Confidence 7777777777654 345555544432211 1 1 12345777777777777777665321
Q ss_pred -----------HHHHhcC-CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHcc-----------CCCCHHHHHHHHHHHHH
Q 002431 328 -----------KATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI-----------DPLAADGLVNRGNTYKE 384 (922)
Q Consensus 328 -----------~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~ 384 (922)
-+++... ...+...+.+-.++...=+....++.+++.-.+ +.++..+--.+-.+|..
T Consensus 343 ii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 343 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp TGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 1111111 111222223333333333444555555554221 23445566667777888
Q ss_pred hCCHHHHHHHHHHHHhhCC--------------CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002431 385 IGRVTDAIQDYIRAITIRP--------------TMAEAHANLASAYKDSGHVEAAIKSY 429 (922)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p--------------~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (922)
..+++.= +..++... +-.+....-+.+|.+.+++++|+++.
T Consensus 423 EEDy~~L----R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 423 EEDYQAL----RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp TTCCHHH----HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred hhhHHHH----HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8777543 22222211 12344455567788888888877643
No 307
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.98 Score=41.30 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHH
Q 002431 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329 (922)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 329 (922)
.+.|+++.|.+..++. ++...|..+|......|+++-|..+|.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554432 3344555555555555555555544443
No 308
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=94.42 E-value=0.21 Score=57.05 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=75.2
Q ss_pred cCCCCC--CCCcEEEEecCCC--CCCCHH-HHHHHHHHHh--hCC-----CeEEEEecCChhh-H--HHHHHHHHHc---
Q 002431 704 RSDYGL--PEDKFIFACFNQL--YKMDPE-IFNTWCNILR--RVP-----NSALWLLRFPAAG-E--MRLRAYAVAQ--- 765 (922)
Q Consensus 704 r~~~~l--~~~~~~~~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~~~~~~~~~-~--~~l~~~~~~~--- 765 (922)
++++|+ .++.+++|-+.|+ +|...- ++....++++ ..| ...+++.|.+..+ . ..+.+.+.+.
T Consensus 515 ~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 594 (796)
T 1l5w_A 515 KVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADV 594 (796)
T ss_dssp HHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHH
Confidence 444555 3567888888887 498877 6776666543 233 3677777765322 2 2232333222
Q ss_pred -----CCCCC--ceEEcCCCC--cHHHHHhccCCcEEecCCC--CCC-hhHHHHHHHcCCCee-eecC
Q 002431 766 -----GVQPD--QIIFTDVAM--KQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMI-TLPL 820 (922)
Q Consensus 766 -----g~~~~--rv~f~~~~~--~~~~~~~~~~~dv~l~~~~--~~g-~~t~~eal~~g~Pvv-~~~~ 820 (922)
.+ ++ +|+|..--. ..+.+ +..+||++.||. +|. ||+-+=+|.-|++.| |+.|
T Consensus 595 in~Dp~~-~~~lKVvfl~nY~vslA~~I--~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG 659 (796)
T 1l5w_A 595 INNDPLV-GDKLKVVFLPDYCVSAAEKL--IPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 659 (796)
T ss_dssp HHTCTTT-GGGEEEEECSSCCHHHHHHH--GGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCT
T ss_pred hcccccc-CCceEEEEECCCCHHHHHHH--hhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCC
Confidence 35 57 899987422 23334 899999999986 888 999999999999988 4444
No 309
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.22 E-value=1.1 Score=40.88 Aligned_cols=46 Identities=20% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 246 YYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
..+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 35667777777776654 45567888888888888888888888774
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.19 E-value=2.9 Score=37.20 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=71.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002431 44 YQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123 (922)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 123 (922)
++-.+|+.++-+-.- +.|..++....++..++-.|.|..++-.+.+ -+...+.+.-+.||.+.+++.+|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667766543322 2344446667778888888999888877643 34466677778888999999999999
Q ss_pred HHHHHHh----CC-------------CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002431 124 CRQALAL----NP-------------LLVD-AHSNLGNLMKAQGLVQEAYSCYLEALRIQPT 167 (922)
Q Consensus 124 ~~~~l~~----~p-------------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 167 (922)
+++.+.- +| .+.+ .+..+|.++.+.|+.++|+..+.......|-
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 9988842 12 2222 2344555555555555555555555554443
No 311
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=94.06 E-value=0.13 Score=49.77 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=42.0
Q ss_pred ceEEcCCCCcHHHHHhcc-CCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcch---hhhHHHHHHhcCCC
Q 002431 771 QIIFTDVAMKQEHIRRSS-LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMA---TRVAGSLCLATGLG 838 (922)
Q Consensus 771 rv~f~~~~~~~~~~~~~~-~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~~---~r~~~~~~~~~g~~ 838 (922)
+|...++.+ +...++. .+|+++ ...|..|++|++++|+|.|..+.+... ...-+..+...|..
T Consensus 115 ~v~v~~f~~--~m~~~l~~~AdlvI---shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 115 KVIGFDFST--KMQSIIRDYSDLVI---SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp EEEECCSSS--SHHHHHHHHCSCEE---ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred eEEEeeccc--hHHHHHHhcCCEEE---ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 455556644 3444577 899998 247789999999999999998865321 22224455555663
No 312
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=9 Score=41.48 Aligned_cols=57 Identities=12% Similarity=-0.105 Sum_probs=29.6
Q ss_pred HhHHHHHHHcCChHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002431 240 GNLASTYYERGQADMAILYYKQAIGC----DPR--FLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (922)
Q Consensus 240 ~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 296 (922)
..++.++...|++.+|...+...... .+. -.+.+......+...+++.+|...+.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666666666666666555411 100 1234445555555556666666555554
No 313
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=6.8 Score=42.43 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=60.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHccC--CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hCCCc----HHH
Q 002431 342 NNLAVIYKQQGNYADAISCYNEVLRID--PLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAIT---IRPTM----AEA 408 (922)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~ 408 (922)
..|+.++...|++.+|...+....... ..+ .+.+.....++...+++..|...+.++.. ..+.. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456777777777777777777664321 111 34666677777778888888777777642 12222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQALLL 435 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (922)
+...|.++...++|.+|..+|..+++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566777777788888888888777664
No 314
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.45 E-value=2.8 Score=44.57 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
+...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|++.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556778888899999999999999999999999999999999999999999999988755
No 315
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.33 E-value=0.7 Score=45.24 Aligned_cols=28 Identities=18% Similarity=-0.126 Sum_probs=20.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 002431 414 SAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (922)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (922)
......|+.++|.+.-.++++.-|..+.
T Consensus 108 l~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 108 NLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 3444568888888888888888777653
No 316
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.84 E-value=1.6 Score=46.57 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=83.4
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002431 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA-IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIK 427 (922)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 427 (922)
...|+.++|...+.+++.+.....-. ... ...+-.+ ...++... ..+...++..+...|++.+|+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHH
Confidence 34578888888888888764221100 000 0011111 11111111 2355668888999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhcccCChhhHhHHHHHHHHHHHHHhccCCCCC
Q 002431 428 SYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPS 481 (922)
Q Consensus 428 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~ 481 (922)
.+++++..+|-+..++..++.++...|+..+|...|+.+.+.+.+.+ |+.|+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL--G~~P~ 244 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL--GIDPG 244 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 99999999999999999999999999999999999999999887765 55554
No 317
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.32 E-value=2 Score=53.26 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEA 59 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 59 (922)
++...+.+|.++...|++++|..+|+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344455555555555555555555544
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.63 E-value=1.1 Score=49.20 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKD 418 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 418 (922)
.+..+|.+......++.|..+|.+|..+.|.+...++.+|.+....|+.-+|.-+|.+++......+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4455666666666777777777777777777777777777777777777777777777776665566666666665554
No 319
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.57 E-value=1.3e-05 Score=84.16 Aligned_cols=223 Identities=15% Similarity=0.185 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002431 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY 213 (922)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 213 (922)
.+.+|..+|..+...++..+|++.|-++ +++..+........+.|++++-+.++..+.+. -..+.+-..+..+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 3445555555555555555555554322 22233344444444555555555555444332 22233344444555
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
.+.++..+-.+.+ ..|+..-....|.-++..|.|+.|.-+|..+ + -|..++.++..+|++..|.+.-
T Consensus 127 Ak~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322111 1233333344555555555555554443321 1 1223444555555555554443
Q ss_pred HHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002431 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (922)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (922)
++ .+++.+|.....++...+++.-|..+--..+-.... +..+...|...|.+++-+.+++..+.+...+..
T Consensus 194 rK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade----L~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 194 RK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE----LEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp TT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred Hh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 33 234455555555555555555554444333322111 222333444555555555555555555545555
Q ss_pred HHHHHHHHHHH
Q 002431 374 GLVNRGNTYKE 384 (922)
Q Consensus 374 ~~~~l~~~~~~ 384 (922)
.+..+|.+|.+
T Consensus 265 mFTELaILYsK 275 (624)
T 3lvg_A 265 MFTELAILYSK 275 (624)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 320
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.35 E-value=5.9 Score=48.95 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 002431 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNL 276 (922)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 276 (922)
+..|..+..++.+.+.++.+++....+++..+. ...|..+-..+...++|++|...+...-... ...+.+..+
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~L 977 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 346667777777788888888887777765432 2256677777788888888877776554322 234456666
Q ss_pred HHHHHHcCCHHHHH
Q 002431 277 GNALKDVGRVDEAI 290 (922)
Q Consensus 277 ~~~~~~~g~~~~A~ 290 (922)
...+++.|+.++-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 66666666655443
No 321
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.78 E-value=1.6 Score=47.22 Aligned_cols=100 Identities=14% Similarity=-0.030 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcH----H
Q 002431 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVAIELR--PNFA----D 102 (922)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~ 102 (922)
-..++..+|..|++.|++++|.+.|.++..... ...+.+..+..++...+++..+...+.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 456788899999999999999999999876543 346788888889999999999999998886541 1122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002431 103 AWSNLASAYMRKGRLNEAAQCCRQALALN 131 (922)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 131 (922)
.....|..+...++|.+|...|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 33455666778899999999888887654
No 322
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.75 E-value=2.2 Score=46.21 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcH----HHHH
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMA----EAHA 410 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~ 410 (922)
++..+|..|.+.|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++.... ..++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444555555555555555555555544321 224455555666666666666666666664431 1111 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002431 411 NLASAYKDSGHVEAAIKSYKQALLLR 436 (922)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~ 436 (922)
..|.++...++|.+|...|-.++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 44555666777777777777766543
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=2.1 Score=46.43 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002431 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (922)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (922)
.++.+...|...+.+++|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+..|+...|.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34555555666666666666666553 2211 234555566666666666666666666665543
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.15 E-value=2.4 Score=46.47 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcCCCCchhhhhHHHH
Q 002431 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (922)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 347 (922)
.+..+|.+......++.|..+|.++..+.|++...++.+|.+....|+.-+|.-+|.+++......+.+..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555555555555544444444444444443
No 325
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.80 E-value=26 Score=35.71 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHHhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH-H
Q 002431 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG-N 278 (922)
Q Consensus 200 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~ 278 (922)
-.+++.+..+|..|.+.+++.+|...|- +..++....+..+..-+...+ .|...+.+...+ .
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaVL 195 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAVL 195 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHHH
Confidence 4568888899999999999888888773 222222234333322222222 233444444433 3
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 002431 279 ALKDVGRVDEAIQCYNQCLS 298 (922)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~ 298 (922)
.|...++...|...++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 45677888888887665543
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.69 E-value=0.85 Score=49.50 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHHHHh--c---------CCCcHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhc-----
Q 002431 43 YYQLHDYDMCIARNEEALR--L---------EPRFAECYGNMANAWKEKGDIDLAI----------RYYLVAIEL----- 96 (922)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 96 (922)
++..+++++|.++-...+. . ++-.+.+|+..+.++...|+..... ..+..++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4566777777776665541 1 1223556666666666666554422 122222211
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 97 RPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL-------VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (922)
Q Consensus 97 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (922)
++. ....++.+...|...+.+++|..+..+.. .|.. ...++.+|.++.-+++|.+|.+.+..++...|
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 111 24455666666666666766666666663 2221 22334445555555555555555555554444
No 327
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.53 E-value=30 Score=35.20 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002431 266 DPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (922)
Q Consensus 266 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (922)
.-.+++.+..+|..+.+.+++.+|..+|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3456778888888888888888888777
No 328
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.45 E-value=2.5 Score=39.41 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=65.0
Q ss_pred EEEEec-CCC-----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCC-CcHHHHHh
Q 002431 714 FIFACF-NQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA-MKQEHIRR 786 (922)
Q Consensus 714 ~~~~~~-~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~-~~~~~~~~ 786 (922)
++|+.- +.. .|-...+..+.. ++....+..++++|....+...+.+.++..|-..-.=.|+|.+ ... .+..
T Consensus 31 YIy~~r~~Gi~IIdL~kT~~~L~~A~~-~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~-~~~~ 108 (202)
T 3j20_B 31 FIYRVRQDGLYVLDVRKTDERLKVAGK-FLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNP-AVKN 108 (202)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHH-HHHHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCS-SSSS
T ss_pred cEeeeeCCCCEEECHHHHHHHHHHHHH-HHHhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccH-hHHh
Confidence 566654 222 233333444433 3344444667778887776777888888777532223455532 222 1334
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecC
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~ 820 (922)
+..-|+.+-+-|-.-...+.||-.+|+|||++..
T Consensus 109 ~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~D 142 (202)
T 3j20_B 109 FFEPDVLIVTDPRADHQAMREAVEIGIPIVALVD 142 (202)
T ss_dssp CCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEEC
T ss_pred ccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEc
Confidence 5677887777777789999999999999997653
No 329
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.65 E-value=47 Score=33.52 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 133 LLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (922)
Q Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (922)
.++..+..+|..+.+.+++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467777888888888888777777663
No 330
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=77.85 E-value=22 Score=30.08 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=67.2
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHh---ccCCcEEe-cC-CCCCChhHHHHHHHc-----C
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR---SSLADLFL-DT-PLCNAHTTGTDILWA-----G 812 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~---~~~~dv~l-~~-~~~~g~~t~~eal~~-----g 812 (922)
.+++++.+.+.....++..+.+.|.. .|..... ..+.+.. ....|+++ |. .|-..|..+++.+.. .
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~--~v~~~~~--~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~ 81 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYE--DVLEAEH--GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKE 81 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESS--HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTT
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEeCC--HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 46778888877788899999988872 3444332 2333322 23467775 66 355558888888764 6
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
+|||.+.+..-...+. -....|..+ ++.. +.+++.+.+.++.
T Consensus 82 ~pii~~s~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 82 IPIIMITAEGGKAEVI--TALKAGVNN-YIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp CCEEEEESCCSHHHHH--HHHHHTCCE-EEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCChHHHH--HHHHcCccE-EEeCCCCHHHHHHHHHHHh
Confidence 8999877654333222 223448877 7753 6777776665554
No 331
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=77.70 E-value=3.6 Score=38.53 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=65.2
Q ss_pred EEEEec-CCC-----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC-CCcHHHHHh
Q 002431 714 FIFACF-NQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV-AMKQEHIRR 786 (922)
Q Consensus 714 ~~~~~~-~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~-~~~~~~~~~ 786 (922)
++|+.- +.. .|-...+..+ .+++....+..++++|..+.+...+.+.+...|-..-.=+|+|. ..... +..
T Consensus 35 YIy~~R~~gihIIdL~kT~~~L~~A-~~~i~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~-~~~ 112 (208)
T 1vi6_A 35 FIFKVRQDGLYVLDIRKLDERIRVA-AKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM-LSE 112 (208)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHH-HHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT-STT
T ss_pred eEEeeeCCCcEEEcHHHHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChh-hHh
Confidence 567765 322 2333333333 34444445567788898777677788888777752111135553 22222 334
Q ss_pred ccCCcEEecCCCCCChhHHHHHHHcCCCeeeecC
Q 002431 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 787 ~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~ 820 (922)
+..-|+.+-+-|-.-...+.||-.+|+|||++..
T Consensus 113 f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 113 YREPEVVFVNDPAIDKQAVSEATAVGIPVVALCD 146 (208)
T ss_dssp CCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEEC
T ss_pred hCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeC
Confidence 5667777766777778999999999999997743
No 332
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.16 E-value=65 Score=32.50 Aligned_cols=28 Identities=21% Similarity=0.032 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002431 267 PRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (922)
Q Consensus 267 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (922)
-.+++.+..+|..+.+.+++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3567788888888888888888877774
No 333
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=75.90 E-value=20 Score=33.67 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=66.1
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---------------CCcEE-ecC-CCCCChhH
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---------------LADLF-LDT-PLCNAHTT 804 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---------------~~dv~-l~~-~~~~g~~t 804 (922)
+.+++|+.+.+.....+...+.+.|.. .|....- ..+-+..+. ..|++ +|- .|-..|..
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~--~v~~a~~--~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~e 136 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVS--EVEQCDS--GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYE 136 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCS--EEEEESS--HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCC--eeeeeCC--HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHH
Confidence 346777777776677788888887762 4544432 344444332 35665 555 35455888
Q ss_pred HHHHHH-------cCCCeeeecCCc-chhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 805 GTDILW-------AGLPMITLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 805 ~~eal~-------~g~Pvv~~~~~~-~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
+++.+. ..+|||.+.+.. -...+- -....|..+ ++....+++.+.+.++..
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~--~~~~~Ga~~-~l~KP~~~L~~~i~~~l~ 195 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEAR--ETIQAGMDA-FLDKSLNQLANVIREIES 195 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHH--HHHHHTCSE-EEETTCTTHHHHHHHHC-
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHH--HHHhCCCCE-EEcCcHHHHHHHHHHHHh
Confidence 887765 578999888764 222221 123458888 887765566666655554
No 334
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=75.01 E-value=39 Score=29.16 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=71.4
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH-----c
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW-----A 811 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~-----~ 811 (922)
.+.+++++-+.+..+.-++..+++.|.. .|....- ..+-+..+ ...|++ +|- -|--.|..+++.+- .
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~--~v~~a~~--g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFN--NTQEADD--GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEECC--HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 3467888988888788899999999973 3443321 22333222 235666 555 46666999998885 5
Q ss_pred CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 812 g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
.+|||.+.+.......- -....|..+ ++.. +.+++.+.+.++.
T Consensus 87 ~ipvI~lTa~~~~~~~~--~~~~~Ga~~-yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 87 HLPVLMITAEAKREQII--EAAQAGVNG-YIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TCCEEEEESSCCHHHHH--HHHHTTCCE-EEESSCCHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCHHHHH--HHHHCCCCE-EEECCCCHHHHHHHHHHHH
Confidence 79999887764443332 223568888 7764 6777776665553
No 335
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=72.48 E-value=37 Score=28.92 Aligned_cols=107 Identities=9% Similarity=0.000 Sum_probs=64.9
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEEecCCCCCChhHHHHHHHc---CCCe
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLFLDTPLCNAHTTGTDILWA---GLPM 815 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~l~~~~~~g~~t~~eal~~---g~Pv 815 (922)
++.+++|+.+.+.....+...+...|. +|..... ..+.+..+ ...|+++ .+...|..+++.+.. ++||
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGF---MADVTES--LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTC---EEEEESC--HHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHSTTSEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCc---EEEEeCC--HHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCCCccE
Confidence 345677777776667778888887776 3443332 33433332 3478888 555557777777664 8999
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHh
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLA 857 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l~ 857 (922)
|.+.+..-....- -....|..+ ++.. +.+++...+.++.
T Consensus 90 i~ls~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 90 LVSSDNPTSEEEV--HAFEQGADD-YIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp EEEESSCCHHHHH--HHHHTTCSE-EEESSCSCHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHH--HHHHcCCce-eeeCCCCCHHHHHHHHHHHH
Confidence 9887654333222 233458877 6653 5666666655544
No 336
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=65.40 E-value=68 Score=27.79 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=67.3
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc-----------cCCcEE-ecCC-CCCChhHHHHHH
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS-----------SLADLF-LDTP-LCNAHTTGTDIL 809 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~-----------~~~dv~-l~~~-~~~g~~t~~eal 809 (922)
.+++|+.+.+.....++..+.+.|.. ..|..... ..+.+..+ ...|++ +|.. |...|..+++.+
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~-~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVN-NEIIAFTD--GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCC-CCEEEESS--HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCc-ceEEEeCC--HHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 46778888777688899999999873 45655442 44555444 346666 5653 444588888887
Q ss_pred Hc-----CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 810 WA-----GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 810 ~~-----g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.. ++|||.+.+..-...+. -....|..+ ++.. +.+++.+.+.++
T Consensus 82 r~~~~~~~~pii~~t~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDDQREIQ--RCYDLGANV-YITKPVNYENFANAIRQL 132 (152)
T ss_dssp HHSTTTTTSCEEEEESCCCHHHHH--HHHHTTCSE-EEECCSSHHHHHHHHHHH
T ss_pred HhcccccCCCEEEEecCCCHHHHH--HHHHCCCcE-EEeCCCCHHHHHHHHHHH
Confidence 65 78999877654333222 233457766 6653 555655555444
No 337
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=65.13 E-value=5.9 Score=39.03 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=50.5
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC-CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~-~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
..++++|....+...+.+.+...|-..-.=+|+|. ..... -..++.=|+++-+-|-.-...+.||-.+|+|||++.
T Consensus 76 ~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~-t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 76 QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL-QTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTT-TSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcc-cccccCCceeEEeCcccchHHHHHHHHcCCCEEEEE
Confidence 45667888776666777777776642111234552 22111 123567788877778888999999999999999764
No 338
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=63.98 E-value=8.8 Score=37.02 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=51.8
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC-CCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~-~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
+..++++|....+...+.+.+...|-..-.=+|+|. ...... ..++.-|+.+-+-|-.-...+.||-.+|+|||++.
T Consensus 70 ~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t-~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 70 PEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT-RSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALT 147 (252)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS-TTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhh-hhccCCceEEEeCCccchHHHHHHHHcCCCEEEEE
Confidence 345677888777667777777777742111134552 222111 44677888877777788999999999999999764
No 339
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=63.64 E-value=22 Score=34.19 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=54.2
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC-----HHH
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----SDM 603 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~ 603 (922)
..+.+||+++.++- +.++..+++.+... .+||.+....+.+ ....++.+.....+..+.. .. +.+
T Consensus 19 ~~~~~rI~~l~SG~-----g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~ 92 (229)
T 3auf_A 19 QGHMIRIGVLISGS-----GTNLQAILDGCREGRIPGRVAVVISDRAD-AYGLERARRAGVDALHMDPAAYPSRTAFDAA 92 (229)
T ss_dssp BTTCEEEEEEESSC-----CHHHHHHHHHHHTTSSSEEEEEEEESSTT-CHHHHHHHHTTCEEEECCGGGSSSHHHHHHH
T ss_pred cCCCcEEEEEEeCC-----cHHHHHHHHHHHhCCCCCeEEEEEcCCCc-hHHHHHHHHcCCCEEEECcccccchhhccHH
Confidence 34568999996532 23555666654433 4787655444322 2344556666655554332 22 467
Q ss_pred HHHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 604 IAKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 604 ~~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+.+.|++.++|++|-. |++.--...++.
T Consensus 93 ~~~~l~~~~~Dliv~a-gy~~IL~~~~l~ 120 (229)
T 3auf_A 93 LAERLQAYGVDLVCLA-GYMRLVRGPMLT 120 (229)
T ss_dssp HHHHHHHTTCSEEEES-SCCSCCCHHHHH
T ss_pred HHHHHHhcCCCEEEEc-ChhHhCCHHHHh
Confidence 8999999999998744 454433334544
No 340
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=63.39 E-value=29 Score=32.87 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=55.5
Q ss_pred cccceeeeecCCCCCChhHhhhhHHhhcCCCCC--eEEEEEecCCCCChHHHHHHHhccCceEECC--CCCHHHHHHHHH
Q 002431 534 LRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN--VEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AMSSDMIAKLIN 609 (922)
Q Consensus 534 ~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~ 609 (922)
.+++||+++.|. .+..+..++..+.... +||.+......+.. -.++.+...-.++.+. ..++.++.+.++
T Consensus 6 ~~~~ri~vl~SG-----~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~-~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~ 79 (215)
T 3kcq_A 6 KKELRVGVLISG-----RGSNLEALAKAFSTEESSVVISCVISNNAEAR-GLLIAQSYGIPTFVVKRKPLDIEHISTVLR 79 (215)
T ss_dssp -CCEEEEEEESS-----CCHHHHHHHHHTCCC-CSEEEEEEEESCTTCT-HHHHHHHTTCCEEECCBTTBCHHHHHHHHH
T ss_pred CCCCEEEEEEEC-----CcHHHHHHHHHHHcCCCCcEEEEEEeCCcchH-HHHHHHHcCCCEEEeCcccCChHHHHHHHH
Confidence 457899987753 3456777777665443 78765544322222 2345566665555443 345788999999
Q ss_pred hCCCeEEEcCCCcCCCCchhhhh
Q 002431 610 EDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+.++|++|-. |++.--...++.
T Consensus 80 ~~~~Dlivla-gy~~IL~~~~l~ 101 (215)
T 3kcq_A 80 EHDVDLVCLA-GFMSILPEKFVT 101 (215)
T ss_dssp HTTCSEEEES-SCCSCCCHHHHH
T ss_pred HhCCCEEEEe-CCceEeCHHHHh
Confidence 9999998744 455433334444
No 341
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=62.49 E-value=17 Score=34.95 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=52.1
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCC-ceEEcCCC-CcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPD-QIIFTDVA-MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-rv~f~~~~-~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
+..++++|..+.+...+.+.+...|-..- .=+|+|.+ ..... ..+..-|+++-+-|-.-...+.||-.+|+|||++.
T Consensus 66 ~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t-~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalv 144 (241)
T 2xzm_B 66 PEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQT-LKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALC 144 (241)
T ss_dssp GGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTC-TTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccc-cccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEe
Confidence 35667788877766677777777775321 11466632 22111 34566777776667778999999999999999775
Q ss_pred C
Q 002431 820 L 820 (922)
Q Consensus 820 ~ 820 (922)
.
T Consensus 145 D 145 (241)
T 2xzm_B 145 D 145 (241)
T ss_dssp C
T ss_pred c
Confidence 3
No 342
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=62.34 E-value=74 Score=27.17 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=62.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----C
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA-----G 812 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~-----g 812 (922)
+.+++|+.+.+.....+...+.+.|.. ..|..... ..+.+..+ ...|++ +|.. +-..|..+++.+.. +
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~--~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVDN--GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEESS--HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEECC--HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 457788888777678899999988873 23444432 34444443 235666 5553 43348888888765 7
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHH
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERA 853 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~ 853 (922)
+|||.+.+..-..... -....|..+ ++.. +.+++.+.+
T Consensus 82 ~pii~~s~~~~~~~~~--~~~~~ga~~-~l~Kp~~~~~~l~~~i 122 (144)
T 3kht_A 82 TPIVILTDNVSDDRAK--QCMAAGASS-VVDKSSNNVTDFYGRI 122 (144)
T ss_dssp CCEEEEETTCCHHHHH--HHHHTTCSE-EEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHH--HHHHcCCCE-EEECCCCcHHHHHHHH
Confidence 8999776653332222 122446666 5543 444444433
No 343
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=62.30 E-value=40 Score=31.99 Aligned_cols=89 Identities=9% Similarity=0.184 Sum_probs=51.5
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCC--eEEEEEecCCCCChHHHHHHHhccCceEECCC--CC-----HHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKEN--VEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----SDMIAKL 607 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~ 607 (922)
+||+++.++-+ .++..+++.+.... .||.+....+.+ ....++.+...-.++.+.. .. +.++.+.
T Consensus 2 ~rI~vl~SG~g-----~~~~~~l~~l~~~~~~~~i~~Vvs~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~ 75 (216)
T 2ywr_A 2 LKIGVLVSGRG-----SNLQAIIDAIESGKVNASIELVISDNPK-AYAIERCKKHNVECKVIQRKEFPSKKEFEERMALE 75 (216)
T ss_dssp EEEEEEECSCC-----HHHHHHHHHHHTTSSCEEEEEEEESCTT-CHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CEEEEEEeCCc-----HHHHHHHHHHHhCCCCCeEEEEEeCCCC-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHH
Confidence 58898864322 34555555543333 487655444333 2345556666665554332 22 4678999
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 608 INEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
|++.++|++| +.|++.--...++.
T Consensus 76 l~~~~~Dliv-~a~y~~il~~~~l~ 99 (216)
T 2ywr_A 76 LKKKGVELVV-LAGFMRILSHNFLK 99 (216)
T ss_dssp HHHTTCCEEE-ESSCCSCCCHHHHT
T ss_pred HHhcCCCEEE-EeCchhhCCHHHHh
Confidence 9999999987 45565443444554
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.50 E-value=71 Score=38.33 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=69.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C-------------------
Q 002431 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-R------------------- 402 (922)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~------------------- 402 (922)
.+...+...|.++-|. +.+..-|.++-.-+.+|.++...|++++|..+|++|-.- .
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3556666777776543 345666777777788899999999999999888876421 0
Q ss_pred -CC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHH
Q 002431 403 -PT--MAEAHANLASAYKDSGHVEAAIKSYKQALLL-RPDFPE 441 (922)
Q Consensus 403 -p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 441 (922)
++ ....|...+.++.+.+-++-+++..+.|++. .++++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 01 1236788999999999999999999999975 445554
No 345
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=61.41 E-value=73 Score=26.81 Aligned_cols=109 Identities=9% Similarity=0.058 Sum_probs=66.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---------CCcEE-ecCC-CCCChhHHHHHHH
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---------LADLF-LDTP-LCNAHTTGTDILW 810 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---------~~dv~-l~~~-~~~g~~t~~eal~ 810 (922)
+.+++++.+.+.....+...+.+.|.. ..|..... ..+.+..+. ..|++ +|.. |-..|...++.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~--~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVP-HEVVTVRD--GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSC-CEEEEECS--HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEECC--HHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHH
Confidence 346777887777678889999888872 34555443 455555443 46776 4553 4344778887775
Q ss_pred -----cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 811 -----AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 811 -----~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.++|||.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIF--HSYDLHVNC-YITKSANLSQLFQIVKGI 128 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHH--HHHHTTCSE-EEECCSSHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHH--HHHHhchhh-eecCCCCHHHHHHHHHHH
Confidence 578999877654333222 223457777 6653 555655554443
No 346
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=59.85 E-value=73 Score=26.31 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=65.9
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecC-CCCCChhHHHHHHH-----cCCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDT-PLCNAHTTGTDILW-----AGLP 814 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~-~~~~g~~t~~eal~-----~g~P 814 (922)
+++++.+.+.....+...+.+.|. +|.... +..+.+..+. ..|++ +|. .|-..|..+++.+. .++|
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~---~v~~~~--~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGY---EVIEAE--NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc---EEEEeC--CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 567778877767788888888876 244332 2344444432 35666 555 35445888888873 4799
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
||.+.+..-.... .-....|..+ ++.. +.+++.+.+.++.
T Consensus 79 ii~~s~~~~~~~~--~~~~~~Ga~~-~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 79 VIVLTAKGGEEDE--SLALSLGARK-VMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp EEEEESCCSHHHH--HHHHHTTCSE-EEESSCCHHHHHHHHHHHH
T ss_pred EEEEecCCchHHH--HHHHhcChhh-hccCCCCHHHHHHHHHHHh
Confidence 9987765333322 2234568887 7753 6777776665554
No 347
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=59.58 E-value=12 Score=36.22 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=61.4
Q ss_pred EEEEec-CCC-----CCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC--CCcHHHHH
Q 002431 714 FIFACF-NQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV--AMKQEHIR 785 (922)
Q Consensus 714 ~~~~~~-~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~--~~~~~~~~ 785 (922)
++|+.- +.. .|-...+..+..-|....-+..++++|....+...+.+.+...|-..-.=+|+|. +.... .
T Consensus 70 YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~--~ 147 (253)
T 3bch_A 70 YIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--A 147 (253)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC--S
T ss_pred cEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccc--c
Confidence 567765 322 2333334444333332122355677887776667777777777742111135552 12211 1
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeecC
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~ 820 (922)
.+..-|+.+-+-|-.-...+.||-.+|+|||++..
T Consensus 148 ~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvD 182 (253)
T 3bch_A 148 AFREPRLLVVTDPRADHQPLTEASYVNLPTIALCN 182 (253)
T ss_dssp TTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEEC
T ss_pred ccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEc
Confidence 34567777666677778999999999999997643
No 348
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=58.50 E-value=1.6e+02 Score=29.88 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHhhcccCChhhH
Q 002431 438 DFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 438 ~~~~~~~~l~~~~~~~~~~~~a 459 (922)
++|....+++..|-..|.|+|-
T Consensus 373 ~DpecfA~LLrFYDgIC~WEEG 394 (472)
T 3re2_A 373 SDPKFFALVLQFYDGICLWEEG 394 (472)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHhhcceecccC
Confidence 4678888888888888888873
No 349
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=58.40 E-value=36 Score=32.25 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCcccceeeeecCCCCCChhHhhhhHHhhcCCC-CCeEEEEEecCCCCChHHHHHHHhccCceEECCCC---C----HHH
Q 002431 532 GGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---S----SDM 603 (922)
Q Consensus 532 ~~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~ 603 (922)
.+..++||+++.|. .+..+..++..... -.+||.+....+. ....++.+...-.++..... + +.+
T Consensus 8 ~~~~~~ri~vl~SG-----~gsnl~all~~~~~~~~~eI~~Vis~~~--a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~ 80 (215)
T 3da8_A 8 PPSAPARLVVLASG-----TGSLLRSLLDAAVGDYPARVVAVGVDRE--CRAAEIAAEASVPVFTVRLADHPSRDAWDVA 80 (215)
T ss_dssp CCCSSEEEEEEESS-----CCHHHHHHHHHSSTTCSEEEEEEEESSC--CHHHHHHHHTTCCEEECCGGGSSSHHHHHHH
T ss_pred CCCCCcEEEEEEeC-----ChHHHHHHHHHHhccCCCeEEEEEeCCc--hHHHHHHHHcCCCEEEeCcccccchhhhhHH
Confidence 34567899988754 24466666665533 2368866554443 23445566666665555311 1 567
Q ss_pred HHHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 604 IAKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 604 ~~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+.+.+++.++|++|- .|++.--...++.
T Consensus 81 ~~~~l~~~~~Dlivl-agy~~iL~~~~l~ 108 (215)
T 3da8_A 81 ITAATAAHEPDLVVS-AGFMRILGPQFLS 108 (215)
T ss_dssp HHHHHHTTCCSEEEE-EECCSCCCHHHHH
T ss_pred HHHHHHhhCCCEEEE-cCchhhCCHHHHh
Confidence 899999999999874 3444333334443
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.38 E-value=63 Score=38.75 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------C
Q 002431 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIEL---------------------R 97 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~ 97 (922)
+...+...|.++-|.+ .+...|.++..-+.+|.+|...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4445555666654432 34555666666667777777777777777777655311 1
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH----HHHHHHHHHHH
Q 002431 98 PN--FADAWSNLASAYMRKGRLNEAAQCCRQALALN-PLLVD----AHSNLGNLMKA 147 (922)
Q Consensus 98 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~----~~~~la~~~~~ 147 (922)
++ ....|...+..+.+.+-++-+++..+.+++.- +++.. .+..+-...+.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 11 34577788888888999999999999988753 44443 34444444443
No 351
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=57.37 E-value=38 Score=39.01 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=38.8
Q ss_pred ceEEcCC--CCcHHHHHhccCCcEEecCC--CCCC-hhHHHHHHHcCCCee-eecCC
Q 002431 771 QIIFTDV--AMKQEHIRRSSLADLFLDTP--LCNA-HTTGTDILWAGLPMI-TLPLE 821 (922)
Q Consensus 771 rv~f~~~--~~~~~~~~~~~~~dv~l~~~--~~~g-~~t~~eal~~g~Pvv-~~~~~ 821 (922)
+|+|++- +...+.+ +..+||.+..+ |.+. ||+-+=+|--|++.+ |++|-
T Consensus 689 KVVFlenY~VslAe~i--ipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGa 743 (879)
T 1ygp_A 689 KVVFVADYNVSKAEII--IPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGA 743 (879)
T ss_dssp EEEEETTCCHHHHHHH--GGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTH
T ss_pred EEEEeCCCCHHHHHHh--hhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccch
Confidence 7999983 3345555 89999998774 6676 999999999999999 55553
No 352
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=56.85 E-value=10 Score=37.48 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=60.4
Q ss_pred EEEEec-CCC-----CCCCHHHHHHHHHHHhhC-CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCC-CCcHHHHH
Q 002431 714 FIFACF-NQL-----YKMDPEIFNTWCNILRRV-PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV-AMKQEHIR 785 (922)
Q Consensus 714 ~~~~~~-~~~-----~K~~~~~~~~~~~il~~~-p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~-~~~~~~~~ 785 (922)
++|+.- +.. .|-...+..+..-|. .. .+..++++|..+.+...+.+.+...|-..-.=+|+|. ...... .
T Consensus 37 YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t-~ 114 (295)
T 2zkq_b 37 YIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ-A 114 (295)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHHHHH-HSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTC-S
T ss_pred eEEeecCCCCEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCccc-c
Confidence 566655 322 233344444433333 32 2356677887776666777777777742111135552 111111 1
Q ss_pred hccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 786 ~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
.++.-|+++-+-|-.-...+.||-.+|+|||++.
T Consensus 115 ~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 115 AFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148 (295)
T ss_dssp SCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEE
T ss_pred cccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEe
Confidence 3466777766666777899999999999999774
No 353
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=55.81 E-value=1e+02 Score=26.70 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=66.0
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCC-CCCChhHHHHHHH---cCCCe
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTP-LCNAHTTGTDILW---AGLPM 815 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~-~~~g~~t~~eal~---~g~Pv 815 (922)
.+++++.+.+.....+...+.+.|. +|.... ...+.+..+. ..|++ +|.. +-..|...++.+. .++||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pi 78 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGF---TVSSFA--SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPM 78 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCc---EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCE
Confidence 4677788777767888888888876 244333 3455555443 35666 5553 3334777777664 47999
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|.+.+..-.... .-....|..+ ++.. +.+++...+.++.
T Consensus 79 i~ls~~~~~~~~--~~~~~~g~~~-~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 79 ILVTGHGDIPMA--VQAIQDGAYD-FIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp EEEECGGGHHHH--HHHHHTTCCE-EEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCChHHH--HHHHhcCCCe-EEeCCCCHHHHHHHHHHHH
Confidence 988765333222 2233468888 7753 6777766665554
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.30 E-value=47 Score=29.63 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=34.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHH---HH---HHHHHHhcCCHHHHHHHHHHHHh
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNL---LL---LGAIYYQLHDYDMCIARNEEALR 61 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~---~~---la~~~~~~g~~~~A~~~~~~al~ 61 (922)
+..+..++..|+|-+|-+.++.+....+.. ...+ .. .|....+.|+...|..++.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667777788888888888877665432 1111 11 12233455666666666666654
No 355
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=55.28 E-value=70 Score=30.17 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=52.7
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECCCC--C-----HHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S-----SDMIAKL 607 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~ 607 (922)
+||+++.++- +.++..+++.+... .+||.+....+.+ ....++.+...-.++.+... . +.++.+.
T Consensus 4 ~ki~vl~sG~-----g~~~~~~l~~l~~~~l~~~I~~Vit~~~~-~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T 3av3_A 4 KRLAVFASGS-----GTNFQAIVDAAKRGDLPARVALLVCDRPG-AKVIERAARENVPAFVFSPKDYPSKAAFESEILRE 77 (212)
T ss_dssp EEEEEECCSS-----CHHHHHHHHHHHTTCCCEEEEEEEESSTT-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred cEEEEEEECC-----cHHHHHHHHHHHhCCCCCeEEEEEeCCCC-cHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHH
Confidence 5888886532 23555566554333 5888655544322 34556666666666544321 1 4578899
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhc
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAM 633 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~ 633 (922)
+++.++|++|-. |++.--...++..
T Consensus 78 l~~~~~Dliv~a-~y~~il~~~~l~~ 102 (212)
T 3av3_A 78 LKGRQIDWIALA-GYMRLIGPTLLSA 102 (212)
T ss_dssp HHHTTCCEEEES-SCCSCCCHHHHHH
T ss_pred HHhcCCCEEEEc-hhhhhCCHHHHhh
Confidence 999999988744 4554333345543
No 356
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.86 E-value=1e+02 Score=26.54 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=27.9
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002431 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (922)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 299 (922)
.+..+|+-++-.+.+...+...+-+++.+..++.+|.+.|+..+|.+++.++-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444555555555555544444444555555555555555555555555555443
No 357
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=52.67 E-value=1.1e+02 Score=26.45 Aligned_cols=121 Identities=9% Similarity=-0.020 Sum_probs=68.7
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---CCcEE-ecCC-CCCChhHHHHHHH---cCCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---LADLF-LDTP-LCNAHTTGTDILW---AGLP 814 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---~~dv~-l~~~-~~~g~~t~~eal~---~g~P 814 (922)
.+++|+.+.+.....+...+.. |. .|.... ...+.+..+. -.|++ +|.. |-..|..+++.+. -.+|
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~---~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 78 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DF---EVTTCE--SGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSV 78 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TS---EEEEES--SHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-Cc---eEEEeC--CHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcE
Confidence 4677788777656777777753 53 244332 2344444332 24776 4553 4444777777654 4788
Q ss_pred eeeecCCcchhhhHHHHHHhcC-CCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002431 815 MITLPLEKMATRVAGSLCLATG-LGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKS 872 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g-~~~~~i~--~~~~~~~~~~~~l~~d~~~~~~~~~~~~~ 872 (922)
||.+.+..-..... . ....| ..+ ++. -+.+++...+.++..........++.+.+
T Consensus 79 ii~~s~~~~~~~~~-~-~~~~g~~~~-~l~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ 136 (151)
T 3kcn_A 79 YLMLTGNQDLTTAM-E-AVNEGQVFR-FLNKPCQMSDIKAAINAGIKQYDLVTSKEELLKK 136 (151)
T ss_dssp EEEEECGGGHHHHH-H-HHHHTCCSE-EEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHH-H-HHHcCCeeE-EEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777654332222 1 22336 767 665 37788887777776554444444444443
No 358
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=51.92 E-value=1.1e+02 Score=25.74 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=66.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc---cCCcEE-ecCC-CCCChhHHHHHHH----cC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS---SLADLF-LDTP-LCNAHTTGTDILW----AG 812 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~---~~~dv~-l~~~-~~~g~~t~~eal~----~g 812 (922)
..+++|+.+.+.....+...+.+.|.. |.... ...+.+..+ ...|++ +|.. |...|...++.+. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~---v~~~~--~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGID---AVGAD--GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCC---EEEES--SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCce---EEEeC--CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCC
Confidence 356778888777678889999888872 43332 233333322 226766 5653 4444888888775 45
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcC
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALD 859 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~d 859 (922)
+|||.+.+..-..... -....|..+ ++.. +.+++...+.+....
T Consensus 82 ~~ii~~s~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAV--DVMHLGVVD-FLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp CEEEEEESSCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCChHHHH--HHHhCCcce-EEeCCCCHHHHHHHHHHHhcC
Confidence 8999877664333222 233458777 6653 677777666665543
No 359
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=51.16 E-value=1.2e+02 Score=26.22 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=66.6
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCC-CCCChhHHHHHHH-----cC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTP-LCNAHTTGTDILW-----AG 812 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~-~~~g~~t~~eal~-----~g 812 (922)
..+++|+.+.+.....+...+.+.|. .|.... ...+.+..+. ..|++ +|.. |-..|..+++.+. -.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGY---QTEHVR--NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRT 81 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCC---EEEEeC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCC
Confidence 45678888877767888888888876 243332 2455554443 35666 5553 4444888888775 47
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
+|||.+.+..-..... -....|..+ ++.. +.+++...+.++.
T Consensus 82 ~pii~~s~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 82 IPVILLTILSDPRDVV--RSLECGADD-FITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp SCEEEEECCCSHHHHH--HHHHHCCSE-EEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHH--HHHHCCCCE-EEeCCCCHHHHHHHHHHHH
Confidence 8999877654333222 223458877 7654 6666666555543
No 360
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=51.06 E-value=29 Score=29.18 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEecCCh----hh---------HHHHHHHHHHcCCCCCceEEcCCC---C-----cHH
Q 002431 724 KMDPEIFNTWCNILRRVPNSALWLLRFPA----AG---------EMRLRAYAVAQGVQPDQIIFTDVA---M-----KQE 782 (922)
Q Consensus 724 K~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~---------~~~l~~~~~~~g~~~~rv~f~~~~---~-----~~~ 782 (922)
.-....|+.++++++..|+..+.|.|... .. .+.+.+.+.+.||+++||...|+- | ..+
T Consensus 19 ~~~~~~L~~ia~~l~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~n~t~~ 98 (118)
T 2hqs_H 19 SDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEA 98 (118)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTSSCSSCCSSHH
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCCCcCHH
Confidence 33446777888889999999999988431 10 135666677889998999887742 1 122
Q ss_pred HHHhccCCcEEecCCC
Q 002431 783 HIRRSSLADLFLDTPL 798 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~ 798 (922)
-.+.=+.++|.+.|.+
T Consensus 99 ~r~~NRRVei~i~~~~ 114 (118)
T 2hqs_H 99 AYSKNRRAVLVYLEHH 114 (118)
T ss_dssp HHHHHSEEEEECC---
T ss_pred HHHhCCcEEEEEecCc
Confidence 2334466777776644
No 361
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=49.92 E-value=1e+02 Score=26.28 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=65.6
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH------
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW------ 810 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~------ 810 (922)
...+++++.+.+.....++..+.+.|. .|.... ...+.+..+ ...|++ +|-. |-..|..+++.+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~ 87 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGH---KVLCVN--GAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASG 87 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--C---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCC---eEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhcc
Confidence 345788888887767888888887775 233332 234444333 346666 5653 5445888888774
Q ss_pred -cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 811 -AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 811 -~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
-.+|||.+.+..-..... -....|..+ ++.. +.+++.+.+.++..
T Consensus 88 ~~~~pii~~s~~~~~~~~~--~~~~~Ga~~-~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 88 MRYTPVVVLSADVTPEAIR--ACEQAGARA-FLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCCCCEEEEESCCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHHC-
T ss_pred CCCCeEEEEeCCCCHHHHH--HHHHcChhh-eeeCCCCHHHHHHHHHHHHH
Confidence 238999887754433222 234458888 7753 67787777766653
No 362
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=49.77 E-value=1.3e+02 Score=26.03 Aligned_cols=143 Identities=9% Similarity=0.078 Sum_probs=71.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002431 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (922)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (922)
.-|..+.-.|..++..++..+..+..+.+..-|+.- -....-+-+--.+.++..-+...- ...|+.
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~IC--NiiD~a~C~y~v~vLd~IGkiFDi------------s~C~Nl 77 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFIC--NLLESIDCRYMFQVLDKIGSYFDL------------DKCQNL 77 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHH--HHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeee--ecchhhchhHHHHHHHHHhhhcCc------------HhhhcH
Confidence 346667777888888888888777665433333221 111222222222223222111110 122333
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (922)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (922)
...+.+|-++- .+.+........+..+|+-++-.+.+...+..++-++..+..++.+|.+.|+..+|.+++.++-+
T Consensus 78 KrVi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 78 KSVVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444433321 11122222234455666666666666665555566677777777777777777777777766665
Q ss_pred h
Q 002431 164 I 164 (922)
Q Consensus 164 ~ 164 (922)
.
T Consensus 154 k 154 (172)
T 1wy6_A 154 K 154 (172)
T ss_dssp T
T ss_pred h
Confidence 4
No 363
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=49.72 E-value=82 Score=25.87 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHH--cCCCeeeecC
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILW--AGLPMITLPL 820 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~--~g~Pvv~~~~ 820 (922)
..++++.+.+.|++ -.|.-.+.....+ ....+|+++.+.+...-..-++..+ .|+||+..++
T Consensus 21 ~~kl~~~~~~~gi~-~~i~~~~~~~~~~---~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 21 VQRIEKYAKSKNIN-ATIEAIAETRLSE---VVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHHTCS-EEEEEECSTTHHH---HTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHHCCCC-eEEEEecHHHHHh---hcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEECh
Confidence 57899999999994 3455555433333 3578999999987776666666554 5899986543
No 364
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.98 E-value=2.5e+02 Score=29.14 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHhhcccCChhhH
Q 002431 438 DFPEATCNLLHTLQCVCSWEDR 459 (922)
Q Consensus 438 ~~~~~~~~l~~~~~~~~~~~~a 459 (922)
+++....+++..|--.|.|+|-
T Consensus 405 ~Dp~cfA~LLrFYDgIC~WEEG 426 (550)
T 3u84_A 405 QDPECFAHLLRFYDGICKWEEG 426 (550)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHhhcceecccC
Confidence 4677888888888888888873
No 365
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=48.33 E-value=1.3e+02 Score=25.55 Aligned_cols=111 Identities=7% Similarity=-0.050 Sum_probs=66.5
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc-------cCCcEE-ecCC-CCCChhHHHHHHHc--
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS-------SLADLF-LDTP-LCNAHTTGTDILWA-- 811 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~-------~~~dv~-l~~~-~~~g~~t~~eal~~-- 811 (922)
.+++|+.+.+.....+...+...|.. ..|.... ...+.+..+ ...|++ +|.. |-..|..+++.+..
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~-~~v~~~~--~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 86 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRV-EEIQSVT--SGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHF 86 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCE-EEEEEES--SHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCC-eeeeecC--CHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 46777877776677888888887762 3444433 244444444 336766 5553 44448888877654
Q ss_pred -----CCCeeeecCCcchhhhHHHHHHhcC-CCCccccC--CHHHHHHHHHHHhcC
Q 002431 812 -----GLPMITLPLEKMATRVAGSLCLATG-LGEEMIVN--SMKEYEERAVSLALD 859 (922)
Q Consensus 812 -----g~Pvv~~~~~~~~~r~~~~~~~~~g-~~~~~i~~--~~~~~~~~~~~l~~d 859 (922)
.+|||.+.+..-..... -....| ..+ ++.. +.+++.+.+.+....
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~--~~~~~g~~~~-~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 87 QPMKNKSIVCLLSSSLDPRDQA--KAEASDWVDY-YVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGGTTTCEEEEECSSCCHHHHH--HHHHCSSCCE-EECSSCCHHHHHHHHHHHHCC
T ss_pred hhccCCCeEEEEeCCCChHHHH--HHHhcCCcce-eeeCCCCHHHHHHHHHHHHHh
Confidence 78888777654333222 233345 776 6653 677777666665543
No 366
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.32 E-value=10 Score=37.70 Aligned_cols=83 Identities=7% Similarity=-0.052 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCC--cEEecCCCCCChh
Q 002431 726 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA--DLFLDTPLCNAHT 803 (922)
Q Consensus 726 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~--dv~l~~~~~~g~~ 803 (922)
.....++..+++++.|+..-++...... ...+.+.+++.|+ ++.|.+.|.-........+..- .-.++..++.-|.
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~-a~g~~~al~~~g~-p~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~ 248 (276)
T 3ksm_A 171 RGAARSEMLRLLKETPTIDGLFTPNEST-TIGALVAIRQSGM-SKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGY 248 (276)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEECCSHHH-HHHHHHHHHHTTC-TTSSEEEEESCCHHHHHHHHTTSSSEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCchh-hhHHHHHHHHcCC-CCCeEEEEeCCCHHHHHHHHcCCceEEEEeCHHHhHH
Confidence 4556677788888887666555443222 3345667888999 7899999976554433333221 2233434444455
Q ss_pred HHHHHHH
Q 002431 804 TGTDILW 810 (922)
Q Consensus 804 t~~eal~ 810 (922)
.+++.|.
T Consensus 249 ~a~~~l~ 255 (276)
T 3ksm_A 249 LAVQRAL 255 (276)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 367
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=47.10 E-value=1.3e+02 Score=25.35 Aligned_cols=108 Identities=9% Similarity=0.012 Sum_probs=66.6
Q ss_pred eEEEEecCChhhHHHHHHHHHH-cCCCCCceEEcCCCCcHHHHHhccC---CcEEecCCCCC---ChhHHHHHHHc----
Q 002431 743 SALWLLRFPAAGEMRLRAYAVA-QGVQPDQIIFTDVAMKQEHIRRSSL---ADLFLDTPLCN---AHTTGTDILWA---- 811 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~-~g~~~~rv~f~~~~~~~~~~~~~~~---~dv~l~~~~~~---g~~t~~eal~~---- 811 (922)
.+++|+.+.+.....++..+.+ .|. +|.... ...+.+..+.. .|+++--.... .|..+++.+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~---~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEY---DFIEVE--NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRT 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCC---EEEEEC--SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCc---cEEEEC--CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCccc
Confidence 4677888877767888888888 776 344332 24566655533 67775443333 37777766554
Q ss_pred -CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 812 -GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 812 -g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
++|||.+.+..-...+. -....|..+ ++.. +.+++.+.+.++..
T Consensus 80 ~~~~ii~ls~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRH--AALKFKVSD-YILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp TTCCEEEEESCCCHHHHH--HHHHSCCSE-EEESSCCTTHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHH--HHHHcCCCE-EEECCCCHHHHHHHHHHHHH
Confidence 89999887764333322 223558777 6653 56666666555543
No 368
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=47.03 E-value=47 Score=31.27 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=53.5
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECCC--C-C----HHHHH
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--M-S----SDMIA 605 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~ 605 (922)
.+.||+++.|. .+..+..+++.+... .+||.+......+.. -.++.+..+-.++.+.. . + +.++.
T Consensus 6 ~~~ri~vl~SG-----~gsnl~all~~~~~~~l~~~I~~Visn~~~a~-~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~ 79 (209)
T 4ds3_A 6 KRNRVVIFISG-----GGSNMEALIRAAQAPGFPAEIVAVFSDKAEAG-GLAKAEAAGIATQVFKRKDFASKEAHEDAIL 79 (209)
T ss_dssp CCEEEEEEESS-----CCHHHHHHHHHHTSTTCSEEEEEEEESCTTCT-HHHHHHHTTCCEEECCGGGSSSHHHHHHHHH
T ss_pred CCccEEEEEEC-----CcHHHHHHHHHHHcCCCCcEEEEEEECCcccH-HHHHHHHcCCCEEEeCccccCCHHHHHHHHH
Confidence 36789988753 345666777665443 378765544322222 23455666655555432 1 1 46789
Q ss_pred HHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 606 KLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+.+++.++|++|-. |++.--...++.
T Consensus 80 ~~l~~~~~Dliv~a-gy~~il~~~~l~ 105 (209)
T 4ds3_A 80 AALDVLKPDIICLA-GYMRLLSGRFIA 105 (209)
T ss_dssp HHHHHHCCSEEEES-SCCSCCCHHHHG
T ss_pred HHHHhcCCCEEEEe-ccccCcCHHHHh
Confidence 99999999999744 344433334444
No 369
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=46.87 E-value=96 Score=29.21 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=51.7
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECC--CCC-----HHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS--AMS-----SDMIAKL 607 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~ 607 (922)
+||+++.|+-+ ..+..++..+... .+||.+..+.+.+ ....++.+...-.++.+. ... +.++.+.
T Consensus 1 ~ri~vl~Sg~g-----snl~ali~~~~~~~~~~~i~~Vis~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~ 74 (212)
T 1jkx_A 1 MNIVVLISGNG-----SNLQAIIDACKTNKIKGTVRAVFSNKAD-AFGLERARQAGIATHTLIASAFDSREAYDRELIHE 74 (212)
T ss_dssp CEEEEEESSCC-----HHHHHHHHHHHTTSSSSEEEEEEESCTT-CHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHH
T ss_pred CEEEEEEECCc-----HHHHHHHHHHHcCCCCceEEEEEeCCCc-hHHHHHHHHcCCcEEEeCcccccchhhccHHHHHH
Confidence 47888776433 2455666554333 4787655544333 224555666666655543 222 4678999
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 608 INEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+++.++|++|-. |++.--...++.
T Consensus 75 l~~~~~Dliv~a-gy~~il~~~~l~ 98 (212)
T 1jkx_A 75 IDMYAPDVVVLA-GFMRILSPAFVS 98 (212)
T ss_dssp HGGGCCSEEEES-SCCSCCCHHHHH
T ss_pred HHhcCCCEEEEe-ChhhhCCHHHHh
Confidence 999999998744 454433334554
No 370
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.71 E-value=18 Score=29.95 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHc--CCCeeeecCCcc
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWA--GLPMITLPLEKM 823 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~--g~Pvv~~~~~~~ 823 (922)
...+++.+++.|++ |.... .+..++-......||+|-.....--..-++..+- |+||++.+...+
T Consensus 23 v~km~~~a~~~gi~---v~i~a-~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Y 89 (108)
T 3nbm_A 23 ANAINEGANLTEVR---VIANS-GAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEY 89 (108)
T ss_dssp HHHHHHHHHHHTCS---EEEEE-EETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHH
T ss_pred HHHHHHHHHHCCCc---eEEEE-cchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHh
Confidence 36888999999994 33321 1112233334668999877655555666777665 899998775444
No 371
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=45.64 E-value=51 Score=31.16 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=52.3
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCC-CCeEEEEEecCCCCChHHHHHHHhccCceEECCC--C-C----HHHHHH
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--M-S----SDMIAK 606 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~ 606 (922)
+++||+++.|. .|+.+..++..... -.+||.+......+.. -.++.+...-.++.+.. . + +.++.+
T Consensus 4 ~~~riavl~SG-----~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~-~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~ 77 (215)
T 3tqr_A 4 EPLPIVVLISG-----NGTNLQAIIGAIQKGLAIEIRAVISNRADAY-GLKRAQQADIPTHIIPHEEFPSRTDFESTLQK 77 (215)
T ss_dssp CCEEEEEEESS-----CCHHHHHHHHHHHTTCSEEEEEEEESCTTCH-HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHH
T ss_pred CCcEEEEEEeC-----CcHHHHHHHHHHHcCCCCEEEEEEeCCcchH-HHHHHHHcCCCEEEeCccccCchhHhHHHHHH
Confidence 46899988753 23445555544322 3588876554333222 23455566655555432 1 1 467899
Q ss_pred HHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 607 LINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
.+++.++|++|- .|++.--...++.
T Consensus 78 ~l~~~~~Dliv~-agy~~il~~~~l~ 102 (215)
T 3tqr_A 78 TIDHYDPKLIVL-AGFMRKLGKAFVS 102 (215)
T ss_dssp HHHTTCCSEEEE-SSCCSCCCHHHHH
T ss_pred HHHhcCCCEEEE-ccchhhCCHHHHh
Confidence 999999999974 4455433334444
No 372
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=45.47 E-value=51 Score=28.35 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=59.1
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcC-CCCCceEEcCCCCcHHHHHhc----cCCcEEe-cCC-CCCChhHHHHHHHc---
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRS----SLADLFL-DTP-LCNAHTTGTDILWA--- 811 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~rv~f~~~~~~~~~~~~~----~~~dv~l-~~~-~~~g~~t~~eal~~--- 811 (922)
+.+++|+.+.+.....+...+.+.| . +|.... ...+-+..+ ...|+++ |.. |-..|..+++.+..
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~---~v~~~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRY---RVTRTV--GRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSC---EEEEEC--CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCe---EEEEeC--CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 3467777777666777888888877 4 233222 223222221 3466664 443 32236667666543
Q ss_pred CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 812 g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.+|||.+.+..-...+. -....|..+ ++.. +.+++...+.++
T Consensus 95 ~~~ii~lt~~~~~~~~~--~~~~~ga~~-~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLL--DAMRAGVRD-VLRWPLEPRALDDALKRA 138 (146)
T ss_dssp TCEEEEEESCCCHHHHH--HHHTTTEEE-EEESSCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHH--HHHHhCCce-eEcCCCCHHHHHHHHHHH
Confidence 78999877754333222 122457766 6653 566665555444
No 373
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=45.18 E-value=1.4e+02 Score=25.21 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=64.8
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc----cCCcEE-ecCC-CCCChhHHHHHHH---cCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS----SLADLF-LDTP-LCNAHTTGTDILW---AGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~----~~~dv~-l~~~-~~~g~~t~~eal~---~g~ 813 (922)
.+++++.+.+.....++..+.+.|. .|.... ...+.+..+ ...|++ +|.. +-..|...++.+. -.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~---~v~~~~--~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGN---EVLTAS--SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc---eEEEeC--CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 5677888777767888888988875 344332 234444333 246766 5553 4344777776654 478
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-..... -....|..+ ++.. +.+++...+.++.
T Consensus 79 ~ii~ls~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 79 AVIILTGHGDLDNAI--LAMKEGAFE-YLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp EEEEEECTTCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHH--HHHHhCcce-eEeCCCCHHHHHHHHHHHH
Confidence 999877654332222 233458777 6653 6677766665554
No 374
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=45.16 E-value=1.5e+02 Score=25.44 Aligned_cols=108 Identities=9% Similarity=0.071 Sum_probs=63.7
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---------CCcEE-ecC-CCCCChhHHHHHHH
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---------LADLF-LDT-PLCNAHTTGTDILW 810 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---------~~dv~-l~~-~~~~g~~t~~eal~ 810 (922)
..+++++.+.+.....++..+...|.. ..|.... +..+.+..+. ..|++ +|- .|-..|..+++.+.
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~--~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTID-HELIILR--DGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSC-EEEEEEC--SHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCC-ccEEEeC--CHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 356788888777678888888877652 2344332 2345555443 46776 555 34444888888775
Q ss_pred c-----CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHH
Q 002431 811 A-----GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVS 855 (922)
Q Consensus 811 ~-----g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~ 855 (922)
. ++|||.+.+..-..... . ....|..+ ++.. +.+++.+.+.+
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~-~-~~~~ga~~-~l~KP~~~~~L~~~i~~ 133 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVI-A-SYELHVNC-YLTKSRNLKDLFKMVQG 133 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHH-H-HHHTTCSE-EEECCSSHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHH-H-HHHcCCcE-EEECCCCHHHHHHHHHH
Confidence 3 68999777653332222 1 22447777 6654 55565554443
No 375
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.65 E-value=48 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002431 410 ANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (922)
Q Consensus 410 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (922)
..+|..+...|++++|...|-+|+...|++....
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3477778888888888888888888888776544
No 376
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=44.39 E-value=1.3e+02 Score=25.40 Aligned_cols=108 Identities=5% Similarity=-0.064 Sum_probs=63.5
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----C
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA-----G 812 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~-----g 812 (922)
..+++|+.+.+.....++..+.+.|.. |....- ..+.+..+ ...|++ +|.. |-..|..+++.+.. .
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~---v~~~~~--~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFD---SDMVHS--AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCE---EEEECS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCe---EEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCC
Confidence 457778888777678888889888872 444332 34443332 335666 5553 44458888887765 8
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
+|||.+.+..-..... ......|..+ ++.. +.+++...+.++
T Consensus 81 ~~ii~~s~~~~~~~~~-~~~~~~g~~~-~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 81 LAIVVVSANAREGELE-FNSQPLAVST-WLEKPIDENLLILSLHRA 124 (140)
T ss_dssp CEEEEECTTHHHHHHH-HCCTTTCCCE-EECSSCCHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHH-HHhhhcCCCE-EEeCCCCHHHHHHHHHHH
Confidence 8999877653222111 0122347766 6653 566655554444
No 377
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=43.69 E-value=1.5e+02 Score=25.03 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=65.5
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--------cCCcEE-ecCC-CCCChhHHHHHHH--
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--------SLADLF-LDTP-LCNAHTTGTDILW-- 810 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--------~~~dv~-l~~~-~~~g~~t~~eal~-- 810 (922)
.+++++.+.+.....+...+.+.|.. ..|..... ..+.+..+ ...|++ +|.. |-..|...++.+.
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~-~~v~~~~~--~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 8 VDILYLEDDEVDIQSVERVFHKISSL-IKIEIAKS--GNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDD 84 (143)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHCTT-CCEEEESS--HHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEECC--HHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 45777887777678889999988872 45555543 44555444 246776 5553 4444888888776
Q ss_pred ---cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHH
Q 002431 811 ---AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERA 853 (922)
Q Consensus 811 ---~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~ 853 (922)
.++|||.+.+..-..... -....|..+ ++.. +.+++.+..
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~L~~~~ 129 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKL--AFESLNIRG-HLIKPLDYGEAIKLF 129 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHH--HHTTTTCCE-EEESSCCHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHH--HHHhcCCCe-EEECCCCHHHHHHHH
Confidence 578999877654332222 233457777 6653 666666553
No 378
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=43.34 E-value=27 Score=29.94 Aligned_cols=51 Identities=25% Similarity=0.399 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecCChh----h---------HHHHHHHHHHcCCCCCceEEcCC
Q 002431 727 PEIFNTWCNILRRVPNSALWLLRFPAA----G---------EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~~~~~~----~---------~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
...|+.++.+++..|+..+.|.|.... . .+.+...+.+.||+.+||...|+
T Consensus 40 ~~~L~~ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 103 (129)
T 2kgw_A 40 YEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 356777888899999989999885321 0 13556667778999899988774
No 379
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=42.91 E-value=1.5e+02 Score=24.85 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=63.3
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCC-CC--CChhHHHHHHHc---CC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTP-LC--NAHTTGTDILWA---GL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~-~~--~g~~t~~eal~~---g~ 813 (922)
.+++|+.+.+.....+...+.+.|. +|.... ...+.+..+. ..|++ +|.. |- ..|..+++.+.. .+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDV---TIQCFA--SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSS---EEEEES--SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCc---EEEEeC--CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC
Confidence 4677888877767888888887776 344332 2445554433 24655 5553 43 337777766653 78
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-..... -....|..+ ++.. +.+++...+.++.
T Consensus 82 ~ii~~s~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~l~~~i~~~~ 124 (136)
T 3kto_A 82 PTIVMASSSDIPTAV--RAMRASAAD-FIEKPFIEHVLVHDVQQII 124 (136)
T ss_dssp CEEEEESSCCHHHHH--HHHHTTCSE-EEESSBCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHH--HHHHcChHH-heeCCCCHHHHHHHHHHHH
Confidence 999877654333222 122457777 6653 6666665555543
No 380
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=42.78 E-value=26 Score=30.36 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCh----hh---------HHHHHHHHHHcCCCCCceEEcCC
Q 002431 728 EIFNTWCNILRRVPNSALWLLRFPA----AG---------EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 728 ~~~~~~~~il~~~p~~~l~~~~~~~----~~---------~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
..|+.++.+++..|+..+.|.|... .. .+.+...+.+.||+++||...|+
T Consensus 47 ~~L~~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 109 (134)
T 2aiz_P 47 QILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4577778888999999999988432 10 13556677788999899988774
No 381
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=42.63 E-value=1e+02 Score=26.36 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=64.8
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA----- 811 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~----- 811 (922)
...+++++.+.+.....+...+...|. +|..... ..+.+..+ ...|++ +|.. +-..|...++.+..
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~---~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF---DIIQCGN--AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE---EEEEESS--HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC---eEEEeCC--HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccC
Confidence 346778888777767888888888876 3444332 34444332 235666 5553 44448888888764
Q ss_pred CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 812 g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
++|||.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 82 ~~pii~ls~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 82 SIPVIALSGRATAKEEA--QLLDMGFID-FIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp TSCEEEEESSCCHHHHH--HHHHHTCSE-EEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHH--HHHhCCCCE-EEeCCCCHHHHHHHHHHH
Confidence 78999877654333222 223458877 6653 566665555444
No 382
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=42.57 E-value=1.6e+02 Score=24.99 Aligned_cols=108 Identities=10% Similarity=0.150 Sum_probs=65.3
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc------------cCCcEE-ecCC-CCCChhHHHHH
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS------------SLADLF-LDTP-LCNAHTTGTDI 808 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~------------~~~dv~-l~~~-~~~g~~t~~ea 808 (922)
.+++++.+.+.....+...+.+.|. ...|..... ..+.+..+ ...|++ +|.. |-..|...++.
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~-~~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGV-VNPIYRCIT--GDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTB-CSCEEEECS--HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCC-CceEEEECC--HHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 4677788777767888999998887 235555442 34444443 346766 5553 33448888887
Q ss_pred HH-----cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 809 LW-----AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 809 l~-----~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
+. .++|||.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIE--ICYSYSISS-YIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHH--HHHHTTCSE-EEECCSSHHHHHHHHHHH
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHH--HHHHCCCCE-EEeCCCCHHHHHHHHHHH
Confidence 76 578999877654332222 223457777 6653 555655554443
No 383
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=42.47 E-value=1.1e+02 Score=28.66 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=66.5
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEEecCCCCCChhHHHHHHHc---CCCeeee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLFLDTPLCNAHTTGTDILWA---GLPMITL 818 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~l~~~~~~g~~t~~eal~~---g~Pvv~~ 818 (922)
+++++.+.+.....+...+...|. .|.... +..+.+..+ ...|+++ .|...|..+++.+.. .+|||.+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~dlvi--lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGF---MADVTE--SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTC---CEEEES--SHHHHHHHHTTSCCSEEE--ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCc---EEEEEC--CHHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 356777777767788888887776 244332 234444443 3479999 565557777777653 7899988
Q ss_pred cCCcchhhhHHHHHHhcCCCCcccc--C-CHHHHHHHHHHHhc
Q 002431 819 PLEKMATRVAGSLCLATGLGEEMIV--N-SMKEYEERAVSLAL 858 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~~g~~~~~i~--~-~~~~~~~~~~~l~~ 858 (922)
.+..-...+-. ....|..+ ++. . +.+++.+.+.++..
T Consensus 75 t~~~~~~~~~~--~~~~Ga~~-~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 75 SDNPTSEEEVH--AFEQGADD-YIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp ESSCCHHHHHH--HHHHTCSE-EEETTCSCTHHHHHHHHHHTS
T ss_pred ECCCCHHHHHH--HHHcCCCE-EEECCCCCHHHHHHHHHHHhc
Confidence 76544333221 22458888 765 3 66777777666654
No 384
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=42.43 E-value=1.6e+02 Score=25.20 Aligned_cols=108 Identities=9% Similarity=-0.013 Sum_probs=58.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEcCCCCcHHHHHhc---cCCcEEe-cCC-CCCChhHHHHHHH---cC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTDVAMKQEHIRRS---SLADLFL-DTP-LCNAHTTGTDILW---AG 812 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~~~~~~~~~~~~~---~~~dv~l-~~~-~~~g~~t~~eal~---~g 812 (922)
..+++++.+.+.....+...+.+. |. ..|..... ..+.+..+ ...|+++ |.. +-..|...++.+. .+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~~--~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 78 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAET--VSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPS 78 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEESS--HHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEecC--HHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 356778887777678888888877 64 23443332 34554443 3367764 543 3333677776665 47
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
+|||.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 79 ~~ii~ls~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~L~~~l~~~ 121 (154)
T 2qsj_A 79 NAVALISGETDHELIR--AALEAGADG-FIPKSADPQVLIHAVSLI 121 (154)
T ss_dssp SEEEEC-----CHHHH--HHHHTTCCB-BCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCHHHHH--HHHHccCCE-EEeCCCCHHHHHHHHHHH
Confidence 8999876653322222 233458887 6654 555555544443
No 385
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=42.23 E-value=40 Score=34.16 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=50.6
Q ss_pred ccceeeeecCCCCCChhH-hhhhHHhhcCCCCCeEEEEEecCCCCC---------hHHHHHHHhccCceEECCCCCHHHH
Q 002431 535 RRLRVGYVSSDFGNHPLS-HLMGSVFGMHNKENVEVFCYALSPNDG---------TEWRQRTQSEAEHFVDVSAMSSDMI 604 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (922)
+++||.|+.+ +..+ ..+..|++. ++||.+..+.++.. .++.+..+...-.++....+.+.++
T Consensus 2 ~~mrIvf~Gt----~~fa~~~L~~L~~~----~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~ 73 (314)
T 1fmt_A 2 ESLRIIFAGT----PDFAARHLDALLSS----GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQEN 73 (314)
T ss_dssp CCCEEEEEEC----SHHHHHHHHHHHHT----TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHH
T ss_pred CCCEEEEEec----CHHHHHHHHHHHHC----CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHH
Confidence 4589999985 2322 344555542 47887665544321 3456666666666665555566788
Q ss_pred HHHHHhCCCeEEEcCC
Q 002431 605 AKLINEDKIQILINLN 620 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~ 620 (922)
.+.+++.++|++|-.+
T Consensus 74 ~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 74 QQLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHHTTCSEEEEES
T ss_pred HHHHHhcCCCEEEEee
Confidence 9999999999998654
No 386
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=42.11 E-value=1.1e+02 Score=25.78 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=63.5
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHHc--CCCe
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILWA--GLPM 815 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~~--g~Pv 815 (922)
..+++++.+.+.....+...+...|. .|.... ...+.+..+ ...|++ +|. .|-..|...++.+.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI---SIDLAY--NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC---EEEEEC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCE
Confidence 35678888877767788888887665 243332 233443332 235766 555 344347888877754 6899
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
|.+.+..-..... -....|..+ ++.. +.+++.+.+.++
T Consensus 79 i~ls~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 79 VYMTYINEDQSIL--NALNSGGDD-YLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp EEEESCCCHHHHH--HHHHTTCCE-EEESSCCHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHH--HHHHcCCcE-EEECCCCHHHHHHHHHHH
Confidence 9876654333222 223458888 7754 666666655443
No 387
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=41.94 E-value=1.4e+02 Score=24.46 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=62.2
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH-----cCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW-----AGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~-----~g~ 813 (922)
.+++++.+.+.....+...+...|. ..|.... +..+.+..+ ...|++ +|. .|...|..+++.+. ..+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~--~~v~~~~--~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGF--KQITAAG--DGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTC--SCEECCS--SHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCC--cEEEecC--CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 4577788877767788888887776 2444333 234444333 235766 555 34445888888875 368
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
|+|.+.+..-..... -....|..+ ++.. +.+++.+.+.++
T Consensus 83 ~ii~~s~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~ 124 (129)
T 1p6q_A 83 AFIILTAQGDRALVQ--KAAALGANN-VLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp EEEECCSCCCHHHHH--HHHHHTCSC-EECCCSSHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHH--HHHHcCCCE-EEECCCCHHHHHHHHHHH
Confidence 888776653332221 122347777 6653 566665555443
No 388
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=41.79 E-value=1.1e+02 Score=24.59 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=60.1
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH-----cCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW-----AGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~-----~g~ 813 (922)
.+++++.+.+.....+...+...|. +|.... ...+.+..+ ...|++ +|.. +-..|...++.+. .++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~---~v~~~~--~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGF---KVIWLV--DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTC---EEEEES--CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCc---EEEEec--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCC
Confidence 3567777777667888888888876 354433 233333322 235655 5653 3344788888876 578
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVS 855 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~ 855 (922)
|||.+.+..-.. .....|..+ ++.. +.+++...+.+
T Consensus 77 ~ii~~~~~~~~~-----~~~~~g~~~-~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 77 PLVLFLGEPPVD-----PLLTAQASA-ILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp CCEEEESSCCSS-----HHHHHHCSE-ECSSCSTTHHHHHHHHT
T ss_pred CEEEEeCCCCch-----hhhhcCHHH-hccCCCCHHHHHHHHHH
Confidence 999776654333 223347766 6653 45555554443
No 389
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=41.75 E-value=44 Score=35.16 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=37.4
Q ss_pred cCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 811 AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 811 ~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
..+|+|..-+.+... -|-.+|...|+|= ..++|.++-++++++++.+
T Consensus 348 ~~~Pivvrl~G~n~~-~g~~~L~~~gl~~-~~~~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 348 LKVPLVVRLEGTNVH-EAQNILTNSGLPI-TSAVDLEDAAKKAVASVTK 394 (395)
T ss_dssp CCSCEEEEEEETTHH-HHHHHHHHTCSCC-EECSSHHHHHHHHHHTTC-
T ss_pred CCCeEEEEcCCCCHH-HHHHHHHHCCCce-EeCCCHHHHHHHHHHHhhc
Confidence 689999776655543 3778998889987 7789999999999998754
No 390
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=41.70 E-value=1.5e+02 Score=24.68 Aligned_cols=107 Identities=10% Similarity=0.169 Sum_probs=63.0
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc-------cCCcEE-ecC-CCCCChhHHHHHHHc--
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS-------SLADLF-LDT-PLCNAHTTGTDILWA-- 811 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~-------~~~dv~-l~~-~~~~g~~t~~eal~~-- 811 (922)
.+++++.+.+..+..+...+...|. ..|..... ..+.+..+ ...|++ +|- .|-..|..+++.+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~--~~v~~~~~--~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~ 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGI--ENIELACD--GQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTC--CCEEEESS--HHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC--ceEEEECC--HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc
Confidence 4567788877767888888887776 23443332 23333332 335766 555 355458888887753
Q ss_pred --CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 812 --GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 812 --g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.+|||.+.+..-..... -....|..+ ++.. +.+++.+.+.++
T Consensus 79 ~~~~~ii~lt~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIK--ECLESGMNG-FLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp CCCSCEEEEESCCSHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHH--HHHHcCCCE-EEeCCCCHHHHHHHHHHH
Confidence 57998776653332222 123458777 7754 566666555444
No 391
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=41.28 E-value=53 Score=29.39 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCceEEcCCCC--------cHHHHHhccCCcEEe---cCCC--CCChhHHHH---HHHcCCCeeeec
Q 002431 756 MRLRAYAVAQGVQPDQIIFTDVAM--------KQEHIRRSSLADLFL---DTPL--CNAHTTGTD---ILWAGLPMITLP 819 (922)
Q Consensus 756 ~~l~~~~~~~g~~~~rv~f~~~~~--------~~~~~~~~~~~dv~l---~~~~--~~g~~t~~e---al~~g~Pvv~~~ 819 (922)
+++++.+++.|+. | |.+... ...-+..++.||++| |||. ..-..|..| |.+.|.|||++.
T Consensus 30 ~~l~~~l~~~G~~---v-~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 30 NKVRELLKKENVM---P-LIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHHHTTTCE---E-ECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCE---E-ECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 4556666666652 3 333211 222366788899984 4432 222556666 788999999987
Q ss_pred CC
Q 002431 820 LE 821 (922)
Q Consensus 820 ~~ 821 (922)
.+
T Consensus 106 ~d 107 (161)
T 2f62_A 106 SD 107 (161)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 392
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=40.81 E-value=37 Score=28.71 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEecCCh----hh---------HHHHHHHHHH-cCCCCCceEEcCC
Q 002431 726 DPEIFNTWCNILRRVPNSALWLLRFPA----AG---------EMRLRAYAVA-QGVQPDQIIFTDV 777 (922)
Q Consensus 726 ~~~~~~~~~~il~~~p~~~l~~~~~~~----~~---------~~~l~~~~~~-~g~~~~rv~f~~~ 777 (922)
....|+.++.+++..|+..+.|.|... .. .+.+...+.+ .||+++||...|+
T Consensus 29 ~~~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~ 94 (123)
T 3td3_A 29 YKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGF 94 (123)
T ss_dssp GHHHHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEE
Confidence 445677888889999999999998531 11 1355666666 7999899988774
No 393
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.80 E-value=2.3e+02 Score=31.94 Aligned_cols=23 Identities=13% Similarity=-0.011 Sum_probs=17.7
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCc
Q 002431 246 YYERGQADMAILYYKQAIGCDPRF 269 (922)
Q Consensus 246 ~~~~g~~~~A~~~~~~~l~~~p~~ 269 (922)
++..|+++.|++.+++ +++-|.+
T Consensus 548 ~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 548 LYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHcCCHHHHHHHHHh-CCCCCCC
Confidence 3788999999999988 4566654
No 394
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=39.09 E-value=87 Score=27.58 Aligned_cols=82 Identities=9% Similarity=0.198 Sum_probs=49.9
Q ss_pred cceeeeecCCCCCChhHhhhhHHhhcCC-CCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCCCe
Q 002431 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHN-KENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQ 614 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 614 (922)
+++|+|+..--....+..++.. +..+. +..++++++..++.. ..+.+.++.... .+.+..++..++.+.++. -|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a-~~~l~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~-~v~~g~~~~~~~~~~~~~--ad 76 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKA-VALSKYKQDIVLLLKGKGPDE-KKIKLLAQKLGV-KAEFGFVNSNELLEILKT--CT 76 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHH-HHTCTTGGGEEEEEECCSTTH-HHHHHHHHHHTC-EEECCCCCHHHHHHHHTT--CS
T ss_pred ceEEEEEeccchhcCHHHHHHH-HHHhccCCCeEEEEEeCCccH-HHHHHHHHHcCC-eEEEeecCHHHHHHHHHh--CC
Confidence 5678888876555555555544 44443 245777777665433 335555655554 333344567788888765 57
Q ss_pred EEEcCCCc
Q 002431 615 ILINLNGY 622 (922)
Q Consensus 615 il~~~~~~ 622 (922)
|+|.++-+
T Consensus 77 v~v~ps~~ 84 (166)
T 3qhp_A 77 LYVHAANV 84 (166)
T ss_dssp EEEECCCS
T ss_pred EEEECCcc
Confidence 88877753
No 395
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.08 E-value=67 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 002431 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFA 67 (922)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 67 (922)
..+|..+...|++++|...|-+|+...|+-.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3466667777777777777777777766543
No 396
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=39.08 E-value=1.5e+02 Score=26.73 Aligned_cols=108 Identities=7% Similarity=0.008 Sum_probs=67.2
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecC-CCCCChhHHHHHHH---cCCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDT-PLCNAHTTGTDILW---AGLP 814 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~-~~~~g~~t~~eal~---~g~P 814 (922)
..+++|+.+.+.....+...+.+.|. .|.... +..+.+..+. ..|++ +|- .|-..|..+++.+. .++|
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGY---AVRQAH--NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC---EEEEEC--SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC---EEEEeC--CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCC
Confidence 35678888887777888888888876 243332 2445554443 35766 455 34444888877665 4799
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
||.+.+..-...+. -....|..+ ++.. +.+++...+.++.
T Consensus 82 ii~lt~~~~~~~~~--~a~~~Ga~~-~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 82 ILVLTGYASIATAV--QAVKDGADN-YLAKPANVESILAALQTNA 123 (184)
T ss_dssp EEEEESSCCHHHHH--HHHHHTCSE-EEESSCCHHHHHHHTSTTH
T ss_pred EEEEeCCCCHHHHH--HHHHhCHHH-heeCCCCHHHHHHHHHHHH
Confidence 99887764433222 123458888 7764 6777766655543
No 397
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=39.06 E-value=41 Score=30.66 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002431 804 TGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (922)
Q Consensus 804 t~~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~ 858 (922)
++.||+-.|.||+.+++.. +...++..-......+++|+++.++.+.++.+
T Consensus 123 E~~~al~~~kpV~~l~~~~----~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 123 EVALALKAKKPVVLLGTQP----EAEKFFTSLDAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp HHHHHHHTTCCEEEESCCH----HHHHHHHHHCTTTEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEEcCcc----cccccCChhhcCeEEEcCCHHHHHHHHHHHHH
Confidence 4568888999999999832 44455655445443467899998888777653
No 398
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=38.71 E-value=76 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 789 ~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
.-|+++-.-|-.-...+.||...|+|||++.
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLI 187 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECC
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEe
Confidence 3566665566667899999999999999764
No 399
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.30 E-value=1.7e+02 Score=25.20 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=65.0
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCC-CCCChhHHHHHHH---cCC
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTP-LCNAHTTGTDILW---AGL 813 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~-~~~g~~t~~eal~---~g~ 813 (922)
.+.+++++.+.+.....+...+...|. +|.... ...+.+..+. ..|++ +|.. |-..|..+++.+. .++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGC---NIITFT--SPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDI 80 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--CHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCC---eEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 345778888877767888888888776 344433 2445544432 35776 4553 4444777777664 478
Q ss_pred CeeeecCCcchhhhHHHHHHhcC-CCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATG-LGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g-~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-..... ..+ ..| ..+ ++.. +.+++...+.++.
T Consensus 81 ~ii~ls~~~~~~~~~-~~~-~~g~~~~-~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 81 ERVVISGYADAQATI-DAV-NRGKISR-FLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp EEEEEECGGGHHHHH-HHH-HTTCCSE-EEESSCCHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHH-HHH-hccchhe-eeeCCCCHHHHHHHHHHHH
Confidence 999877653322221 222 234 767 6653 6777776666654
No 400
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=37.65 E-value=75 Score=32.71 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=53.8
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g 812 (922)
...++..|++.|+-+.+.. .++.++.+++.|+. ++ | .+.++.++- ..+|+++-+.|-.- .-.+++|+..|
T Consensus 40 ~~~~~~~~~~~lvav~d~~--~~~a~~~a~~~g~~--~~-y---~d~~ell~~-~~iDaV~I~tP~~~H~~~~~~al~aG 110 (350)
T 4had_A 40 VPAIQDAENCVVTAIASRD--LTRAREMADRFSVP--HA-F---GSYEEMLAS-DVIDAVYIPLPTSQHIEWSIKAADAG 110 (350)
T ss_dssp HHHHHHCSSEEEEEEECSS--HHHHHHHHHHHTCS--EE-E---SSHHHHHHC-SSCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEEECCC--HHHHHHHHHHcCCC--ee-e---CCHHHHhcC-CCCCEEEEeCCCchhHHHHHHHHhcC
Confidence 3456778999987666542 56778888899983 22 2 345666643 46899887777665 66688999999
Q ss_pred CCeee
Q 002431 813 LPMIT 817 (922)
Q Consensus 813 ~Pvv~ 817 (922)
++|++
T Consensus 111 khVl~ 115 (350)
T 4had_A 111 KHVVC 115 (350)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99996
No 401
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=37.29 E-value=42 Score=33.50 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=66.1
Q ss_pred CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCc---H-HHHHhc---cCCcEEecCCCCCCh--hHHHHH--
Q 002431 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMK---Q-EHIRRS---SLADLFLDTPLCNAH--TTGTDI-- 808 (922)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~---~-~~~~~~---~~~dv~l~~~~~~g~--~t~~ea-- 808 (922)
.++-++++.... .+++.|.+.+++.|..-+.+...-..+. . .....+ ...|+++.+|+.+-- ...+..
T Consensus 155 ~~g~~vLi~rg~-~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~ 233 (286)
T 1jr2_A 155 SSALPLLFPCGN-LKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELS 233 (286)
T ss_dssp CCSSCEEEEESC-GGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEECCh-hhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhc
Confidence 344555554322 2366788888999986555544333222 1 232333 468999988775431 112222
Q ss_pred --HHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHh
Q 002431 809 --LWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLA 857 (922)
Q Consensus 809 --l~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~ 857 (922)
...++++++ .|..++..+...|+....++ .+.+++++.+.+..
T Consensus 234 ~~~l~~~~i~a------IG~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 234 GDNIDQIKFAA------IGPTTARALAAQGLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGGSEEEE------SSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHT
T ss_pred cccccCCEEEE------ECHHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHH
Confidence 234677776 56777888999999762344 47888887776654
No 402
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=37.27 E-value=57 Score=37.83 Aligned_cols=155 Identities=12% Similarity=-0.004 Sum_probs=80.8
Q ss_pred CcCCCCCCCCcEEEEec--CCCC----C-----CCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCc
Q 002431 703 KRSDYGLPEDKFIFACF--NQLY----K-----MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQ 771 (922)
Q Consensus 703 ~r~~~~l~~~~~~~~~~--~~~~----K-----~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r 771 (922)
+++.+|++++..++.-. -|.. + ....-++.+.+.+. ++..|+ +-..|... ......+. .++
T Consensus 528 ~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~li-~r~Hp~~~----~~~~~~~~-~~~ 599 (729)
T 3l7i_A 528 IRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELG--DDYVIL-LRMHYLIS----NALDLSGY-ENF 599 (729)
T ss_dssp HHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHT--TTEEEE-ECCCHHHH----TTCCCTTC-TTT
T ss_pred HHHHhCCCCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcC--CCeEEE-EecCcchh----cccccccc-CCc
Confidence 67788998776554322 1211 0 11122344444443 355544 44444311 11111234 355
Q ss_pred eEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc--hhh-hHHHHHHhc--CCCCccccCCH
Q 002431 772 IIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM--ATR-VAGSLCLAT--GLGEEMIVNSM 846 (922)
Q Consensus 772 v~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~--~~r-~~~~~~~~~--g~~~~~i~~~~ 846 (922)
++.... ..+...++..+|+.+.=+ +.+..|.+..|.|||...-+.- ... -| +.-.. -+|+ -++.|.
T Consensus 600 ~~~~~~--~~di~~ll~~aD~lITDy----SSv~fD~~~l~kPiif~~~D~~~Y~~~~rg--~y~d~~~~~pg-~~~~~~ 670 (729)
T 3l7i_A 600 AIDVSN--YNDVSELFLISDCLITDY----SSVMFDYGILKRPQFFFAYDIDKYDKGLRG--FYMNYMEDLPG-PIYTEP 670 (729)
T ss_dssp EEECTT--CSCHHHHHHTCSEEEESS----CTHHHHHGGGCCCEEEECTTTTTTTSSCCS--BSSCTTSSSSS-CEESSH
T ss_pred EEeCCC--CcCHHHHHHHhCEEEeec----hHHHHhHHhhCCCEEEecCCHHHHhhccCC--cccChhHhCCC-CeECCH
Confidence 554443 234455567799997332 3578999999999998743321 110 01 01011 3556 778999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 847 KEYEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 847 ~~~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
++.++.+.......+.....++..++..
T Consensus 671 ~eL~~~i~~~~~~~~~~~~~~~~~~~~~ 698 (729)
T 3l7i_A 671 YGLAKELKNLDKVQQQYQEKIDAFYDRF 698 (729)
T ss_dssp HHHHHHHTTHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHh
Confidence 9999888776543333334444444443
No 403
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.69 E-value=25 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHh
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYE 27 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~ 27 (922)
+.+|+.+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5678888888888888888887764
No 404
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=36.57 E-value=66 Score=32.40 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=51.1
Q ss_pred HHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc
Q 002431 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA 811 (922)
Q Consensus 733 ~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~ 811 (922)
+.+.+.+.|+..++-+.+. . .++.++.+++.|+. . ..+.++.+. .+|+++-+.|..- ...+.+|+..
T Consensus 22 ~~~~l~~~~~~~l~av~d~-~-~~~~~~~a~~~~~~-~------~~~~~~ll~---~~D~V~i~tp~~~h~~~~~~al~~ 89 (308)
T 3uuw_A 22 YLPILTKSERFEFVGAFTP-N-KVKREKICSDYRIM-P------FDSIESLAK---KCDCIFLHSSTETHYEIIKILLNL 89 (308)
T ss_dssp THHHHTSCSSSEEEEEECS-C-HHHHHHHHHHHTCC-B------CSCHHHHHT---TCSEEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEECC-C-HHHHHHHHHHcCCC-C------cCCHHHHHh---cCCEEEEeCCcHhHHHHHHHHHHC
Confidence 4455677898888755443 2 55677777788883 1 234556664 7999988877766 5556799999
Q ss_pred CCCeee
Q 002431 812 GLPMIT 817 (922)
Q Consensus 812 g~Pvv~ 817 (922)
|+||++
T Consensus 90 gk~vl~ 95 (308)
T 3uuw_A 90 GVHVYV 95 (308)
T ss_dssp TCEEEE
T ss_pred CCcEEE
Confidence 999885
No 405
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.36 E-value=2.3e+02 Score=25.12 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCCCceEEcC-CCCcHHHHHhc--cCCcEEecCCCCCChhHH----HHHHH-cC---CCeeeecCCcc
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTD-VAMKQEHIRRS--SLADLFLDTPLCNAHTTG----TDILW-AG---LPMITLPLEKM 823 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~-~~~~~~~~~~~--~~~dv~l~~~~~~g~~t~----~eal~-~g---~Pvv~~~~~~~ 823 (922)
..-+...++..|. +|+.+| .+|.+++.... ..+|++.-++..+.+.+. ++++- .| +||+ ..|...
T Consensus 35 ~~~va~~l~~~G~---eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~-vGG~~~ 110 (161)
T 2yxb_A 35 AKVVARALRDAGF---EVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV-LGGTIP 110 (161)
T ss_dssp HHHHHHHHHHTTC---EEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEECCC
T ss_pred HHHHHHHHHHCCC---EEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCc
Confidence 4566777888887 488888 47777776654 467888877665554443 34442 34 4544 344433
Q ss_pred hhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 824 ATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 824 ~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
.... ..+..+|.+. .+.. +.++.++.+.++..
T Consensus 111 ~~~~--~~l~~~G~d~-v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 111 IPDL--EPLRSLGIRE-IFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HHHH--HHHHHTTCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred hhcH--HHHHHCCCcE-EECCCCCHHHHHHHHHHHHH
Confidence 2222 3477889986 5553 34667777777653
No 406
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=36.24 E-value=68 Score=33.64 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=36.9
Q ss_pred cCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002431 811 AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (922)
Q Consensus 811 ~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d 859 (922)
.++|+|..-+.+. ..-|..+|...|+|= ..++|.++-++++++++.+
T Consensus 341 ~~~pivvrl~G~n-~~~g~~~l~~~g~~~-~~~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 341 VNVPVVVRLEGNN-AELGAKKLADSGLNI-IAAKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp CCSCEEEEEESTT-HHHHHHHHHTTCSSE-EECSSHHHHHHHHHHHTTT
T ss_pred CCCeEEEEeCCCC-HHHHHHHHHHCCCce-ecCCCHHHHHHHHHHHhhc
Confidence 6899987665554 455667888889976 6679999999999998754
No 407
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=36.01 E-value=14 Score=35.75 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCeEE-EEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC---cHHHHHhc--cCCcEEecCCCCCChhHHHHHH--HcC
Q 002431 741 PNSAL-WLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM---KQEHIRRS--SLADLFLDTPLCNAHTTGTDIL--WAG 812 (922)
Q Consensus 741 p~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~---~~~~~~~~--~~~dv~l~~~~~~g~~t~~eal--~~g 812 (922)
++-++ ++-|.+ +++.|.+.+++.|+..+.+...-..+ ..+....+ ...|+++.+||.+- ...++.+ ..+
T Consensus 109 ~~~~vL~~rg~~--~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v-~~~~~~~~~~~~ 185 (229)
T 3p9z_A 109 EKKSVLYLRAKE--IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHA-KAFLHYFEFLEN 185 (229)
T ss_dssp TTCEEEEEEESS--CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHH-HHHHHHSCCCTT
T ss_pred CCCEEEEECCcc--chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHHHH-HHHHHHhCcccC
Confidence 34444 444433 25677888888998655555544322 12223333 45788887776322 1122322 124
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcC
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALD 859 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d 859 (922)
+++++ .|..++..+...|+.- .++ .+.+++++.+.+++.+
T Consensus 186 ~~~~a------IG~~Ta~~l~~~G~~v-~va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 186 YTAIS------IGNTTALYLQEQGIPS-YIAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp CEEEE------SSHHHHHHHHHTTCCE-EECSSSSHHHHHHHHHHTC--
T ss_pred CEEEE------ECHHHHHHHHHcCCCc-eeCCCCCHHHHHHHHHHHhhh
Confidence 56665 5677788899999975 565 4788888888877543
No 408
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=35.93 E-value=43 Score=29.51 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCChh----h---------HHHHHHHHHHcCCCCCceEEcCC
Q 002431 728 EIFNTWCNILRRVPNSALWLLRFPAA----G---------EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 728 ~~~~~~~~il~~~p~~~l~~~~~~~~----~---------~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
..|+.++.+++..|+..+.|.|.... . .+.+...+.+.||+++||...|+
T Consensus 51 ~~L~~ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 113 (149)
T 2k1s_A 51 NTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 45667777888999999999884211 0 13456666778999899988874
No 409
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=35.89 E-value=65 Score=29.09 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCChh----h---------HHHHHHHHHHcCCCCCceEEcCCCCcH--------HHHHh
Q 002431 728 EIFNTWCNILRRVPNSALWLLRFPAA----G---------EMRLRAYAVAQGVQPDQIIFTDVAMKQ--------EHIRR 786 (922)
Q Consensus 728 ~~~~~~~~il~~~p~~~l~~~~~~~~----~---------~~~l~~~~~~~g~~~~rv~f~~~~~~~--------~~~~~ 786 (922)
..|+.++.+++..|+.++.|.|.... . .+.+.+.+.+.||+++||...|+-... +-...
T Consensus 71 ~~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~r~~ 150 (169)
T 3ldt_A 71 PGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQ 150 (169)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCTTCTTSCCCTTTSCGGGG
T ss_pred HHHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECCcCCCCCCCChhHHHh
Confidence 45667788899999989989884311 0 135677778889999999998842211 11123
Q ss_pred ccCCcEEecCC
Q 002431 787 SSLADLFLDTP 797 (922)
Q Consensus 787 ~~~~dv~l~~~ 797 (922)
-+.++|.+.+.
T Consensus 151 NRRVei~~~~~ 161 (169)
T 3ldt_A 151 NRRIEIQWFTS 161 (169)
T ss_dssp TSEEEEEEECC
T ss_pred cCcEEEEEecC
Confidence 45677776653
No 410
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=35.64 E-value=1.9e+02 Score=24.11 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=64.7
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH-----cCC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW-----AGL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~-----~g~ 813 (922)
.+++++.+.+.....+...+.+.|. .|.... +..+.+..+ ...|++ +|. .|-..|..+++.+. ..+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGY---EVRRAA--SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCC---EEEEeC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 5677788777767888888888776 244332 234444332 345666 555 35445888887774 378
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-..... -....|..+ ++.. +.+++...+.++.
T Consensus 80 pii~~t~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 80 PILMLTAQGDISAKI--AGFEAGAND-YLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp CEEEEECTTCHHHHH--HHHHHTCSE-EEETTCCHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHH--HHHhcCcce-EEeCCCCHHHHHHHHHHHH
Confidence 999877654333221 122348877 7764 6667666655544
No 411
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=35.33 E-value=1.9e+02 Score=26.89 Aligned_cols=105 Identities=9% Similarity=-0.016 Sum_probs=63.8
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEE-ecC-CCCCChhHHHHHHH---cCCCeeee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF-LDT-PLCNAHTTGTDILW---AGLPMITL 818 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~-l~~-~~~~g~~t~~eal~---~g~Pvv~~ 818 (922)
+++++.+.+.....+...+...| .|.... ...+.+......|++ +|- .|-..|...++.+. .++|||.+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~----~v~~~~--~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG----RVKTFL--TGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE----EEEEES--SHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC----CEEEEC--CHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 56777777766777777777655 343332 245555544667777 455 34444777777765 57999988
Q ss_pred cCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 819 PLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
.+..-..... -....|..+ ++.. +.+++.+.+.++.
T Consensus 78 t~~~~~~~~~--~~~~~ga~~-~l~Kp~~~~~L~~~i~~~~ 115 (220)
T 1p2f_A 78 TLLSDDESVL--KGFEAGADD-YVTKPFNPEILLARVKRFL 115 (220)
T ss_dssp ESCCSHHHHH--HHHHHTCSE-EEESSCCHHHHHHHHHHHH
T ss_pred EcCCCHHHHH--HHHHcCCCE-EEECCCCHHHHHHHHHHHH
Confidence 7654333222 122458887 7753 6777776665543
No 412
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=34.90 E-value=27 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=24.3
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
..-|++||||. +.|||+++|+.+|.-+|...
T Consensus 211 ~~~~~vlD~f~-GsGtt~~~a~~~gr~~ig~e 241 (260)
T 1g60_A 211 NPNDLVLDCFM-GSGTTAIVAKKLGRNFIGCD 241 (260)
T ss_dssp CTTCEEEESSC-TTCHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEECCC-CCCHHHHHHHHcCCeEEEEe
Confidence 45699999864 33899999999999888443
No 413
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=34.84 E-value=1.9e+02 Score=28.69 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCC--CCeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC----HHHH
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNK--ENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS----SDMI 604 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~ 604 (922)
..+++||+++.|.. |+.+..++..... -..||.+......+ ..+..+..+..++.++. -+ +.++
T Consensus 87 ~~~~~ri~vl~Sg~-----g~~l~~ll~~~~~g~l~~~i~~Visn~~~---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 158 (286)
T 3n0v_A 87 PNHRPKVVIMVSKA-----DHCLNDLLYRQRIGQLGMDVVAVVSNHPD---LEPLAHWHKIPYYHFALDPKDKPGQERKV 158 (286)
T ss_dssp TTCCCEEEEEESSC-----CHHHHHHHHHHHTTSSCCEEEEEEESSST---THHHHHHTTCCEEECCCBTTBHHHHHHHH
T ss_pred CCCCcEEEEEEeCC-----CCCHHHHHHHHHCCCCCcEEEEEEeCcHH---HHHHHHHcCCCEEEeCCCcCCHHHHHHHH
Confidence 45678999887654 2455555554322 23687654433322 23335555556655542 11 3568
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhhc
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFAM 633 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~~ 633 (922)
.+.+++.++|++| +.|++.--...++..
T Consensus 159 ~~~l~~~~~Dliv-la~y~~il~~~~l~~ 186 (286)
T 3n0v_A 159 LQVIEETGAELVI-LARYMQVLSPELCRR 186 (286)
T ss_dssp HHHHHHHTCSEEE-ESSCCSCCCHHHHHH
T ss_pred HHHHHhcCCCEEE-ecccccccCHHHHhh
Confidence 8999999999886 555665444455543
No 414
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=34.77 E-value=2.1e+02 Score=24.32 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=57.6
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc---CCCee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA---GLPMI 816 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~---g~Pvv 816 (922)
+++|+.+.+.....+...+.+.|- ...|.... ...+.+..+ ...|++ +|.. +-..|..+++.+.. .+|||
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~-~~~v~~~~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPD-VESVLQAK--NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTT-EEEEEEES--SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCC-cEEEEEEC--CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 556666655555666666665542 12233322 233444333 235655 4543 33447777776654 78998
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
.+.+..-....- -....|..+ ++.. +.+++.+.+.++.
T Consensus 99 ~ls~~~~~~~~~--~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 99 VVTTFKRAGYFE--RAVKAGVDA-YVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp EEESCCCHHHHH--HHHHTTCSE-EEETTSCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHH--HHHHCCCcE-EEecCCCHHHHHHHHHHHH
Confidence 877654333222 233458777 6653 5666665555544
No 415
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.56 E-value=3.7e+02 Score=27.00 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002431 104 WSNLASAYMRKGRLNEAAQCCRQALALNPL 133 (922)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 133 (922)
+..-....++.++|..|....+++++..|.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333444556777888888888888777764
No 416
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=34.11 E-value=1.3e+02 Score=23.29 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=7.5
Q ss_pred HcCCHHHHHHHHHHHH
Q 002431 79 EKGDIDLAIRYYLVAI 94 (922)
Q Consensus 79 ~~g~~~~A~~~~~~al 94 (922)
+.|++++|+.+|.+++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4445554444444443
No 417
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=34.05 E-value=1.7e+02 Score=24.56 Aligned_cols=107 Identities=7% Similarity=0.007 Sum_probs=63.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc---cCCcEE-ecCC-CC-CChhHHHHHHH--cCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS---SLADLF-LDTP-LC-NAHTTGTDILW--AGL 813 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~---~~~dv~-l~~~-~~-~g~~t~~eal~--~g~ 813 (922)
+.+++|+.+.+.....+...+.+.|.. |.... ...+.+..+ ...|++ +|.. |. ..|..+++.+. -++
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~---v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYT---VEIAL--TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISEL 79 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCE---EEEES--SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCE---EEEec--ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCC
Confidence 356778888777688899999988862 44332 244444443 345776 5553 33 34777777665 489
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
|||.+.+..-...+. -....|..+ ++.. +.+++...+.++
T Consensus 80 ~ii~ls~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~l~~~i~~~ 121 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVE--KIRSVTAYG-YVMKSATEQVLITIVEMA 121 (140)
T ss_dssp CEEEEESSSSCCCCG--GGGGSCEEE-EEETTCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHH--HHHhCCCcE-EEeCCCCHHHHHHHHHHH
Confidence 999877654332221 122346666 6653 666666555544
No 418
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.83 E-value=92 Score=24.80 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=21.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002431 3 MALAHQMYKSGSYKQALEHSNSVYERNP 30 (922)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p 30 (922)
+..+..++..|+|=+|-+.++.+....|
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 4567777788888888888888777664
No 419
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=33.46 E-value=2.1e+02 Score=23.88 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=61.1
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----CC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA-----GL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~-----g~ 813 (922)
.+++++.+.+.....+...+...|. .|.... ...+.+..+ ...|++ +|.. |-..|...++.+.. .+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGY---RPITAF--SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCc---eEEEeC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCC
Confidence 4577788877767888888888776 244332 234444332 235766 5553 44448888888853 68
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-. .........|..+ ++.. +.+++...+.++.
T Consensus 79 ~ii~ls~~~~~--~~~~~~~~~~~~~-~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 79 PVLMLTAKPLT--PEEANEYGSYIED-YILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp CEEEEESSCCC--HHHHHHTTTTCSE-EEECCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCh--HHHHHHhhcCHhh-eEeCCCCHHHHHHHHHHHH
Confidence 99988765321 1111112224456 6654 4556555554443
No 420
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=33.24 E-value=2e+02 Score=23.50 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=63.7
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----CC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA-----GL 813 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~-----g~ 813 (922)
.+++++.+.+.....+...+.+.|. ..|..... ..+.+..+ ...|++ +|.. |-..|...++.+.. .+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~--~~v~~~~~--~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAED--GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTC--CCEEEESS--HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCC--cEEEeeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 4677788877767788888888776 23443332 34444333 235766 5553 44458888888864 68
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
|||.+.+..-..... -....|..+ ++.. +.+++.+.+.++
T Consensus 81 ~ii~~s~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~l~~~i~~~ 122 (128)
T 1jbe_A 81 PVLMVTAEAKKENII--AAAQAGASG-YVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp CEEEEESSCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHH--HHHHhCcCc-eeecCCCHHHHHHHHHHH
Confidence 998776654333222 223457777 6653 566666555443
No 421
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=33.04 E-value=2.1e+02 Score=23.90 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=62.8
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCCCCCChhHHHHHHH---cCCCee
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTPLCNAHTTGTDILW---AGLPMI 816 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~~~~g~~t~~eal~---~g~Pvv 816 (922)
.+++++.+.+.....+...+.+.|. +|.... ...+.+..+. ..|++ +|..+-..|...++.+. .++|||
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGF---NVIWAK--NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTC---EEEEES--SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC---EEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEE
Confidence 4677788777767888888888776 344333 2344444432 35666 55512112556666554 479999
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
.+.+..-..... -....|..+ ++.. +.+++.+.+.++..
T Consensus 80 ~ls~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 80 VLSAYVDKDLII--NSVKAGAVD-YILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp EEESCCCHHHHH--HHHHHTCSC-EEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHH--HHHHCCcce-eEeCCCCHHHHHHHHHHHHh
Confidence 887654332222 223458877 6653 66777666665543
No 422
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=32.32 E-value=50 Score=27.85 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEEecCChh----h---------HHHHHHHHHHcCCC-CCceEEcCC
Q 002431 725 MDPEIFNTWCNILRRVPNSALWLLRFPAA----G---------EMRLRAYAVAQGVQ-PDQIIFTDV 777 (922)
Q Consensus 725 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~----~---------~~~l~~~~~~~g~~-~~rv~f~~~ 777 (922)
-....|+.++.+++..|+.++.|.|.... . .+.+...+.+.|++ ++|+...|+
T Consensus 31 ~~~~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 31 KEYKKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp GGHHHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEE
Confidence 34567778888899999989999985311 1 13566777888998 899988875
No 423
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.20 E-value=2e+02 Score=25.58 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHH------HHHHHHHcCCHHHHHHHHHHHHh
Q 002431 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGN------MANAWKEKGDIDLAIRYYLVAIE 95 (922)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~------la~~~~~~g~~~~A~~~~~~al~ 95 (922)
-+..+..++..|+|-+|-+.++.+-+..+.. ...+.. .|....+.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677777888888888888887665432 122222 22234456666666666666654
No 424
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: c.23.17.1
Probab=31.96 E-value=1.6e+02 Score=27.37 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcC--CCCcHHHHHhccCCcEEecCCCCCChhHH
Q 002431 728 EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD--VAMKQEHIRRSSLADLFLDTPLCNAHTTG 805 (922)
Q Consensus 728 ~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~--~~~~~~~~~~~~~~dv~l~~~~~~g~~t~ 805 (922)
+...+.....++.|++ ++.+|.-|..--+|.+..++.++.+.=|+=.| ++.-.+--..+
T Consensus 115 Rsaaa~~~~~~~l~~~-I~aIGNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESK~~L------------------ 175 (207)
T 1ou0_A 115 RSAAGIRIAMQDHRNS-VIVIGNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGL------------------ 175 (207)
T ss_dssp HHHHHHHHHHHHCSSE-EEEESSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHcCCc-EEEEeCcHHHHHHHHHHHHcCCCCCcEEEEeCCCccCHHHHHHHH------------------
Confidence 3443434444566884 55668888777888888887777555455333 32222222111
Q ss_pred HHHHHcCCCeeeecCCcchhhhHHHHHHhc
Q 002431 806 TDILWAGLPMITLPLEKMATRVAGSLCLAT 835 (922)
Q Consensus 806 ~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~ 835 (922)
+..|+|.||..|..--|-+.+++++.+
T Consensus 176 ---~~~~vP~I~~~GrkGGS~vAaAivNAL 202 (207)
T 1ou0_A 176 ---VSSHIEYISVEGHRGGSPIAASIVNGF 202 (207)
T ss_dssp ---HHSSSCEEEESSSCCCHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 124899999999887888887777654
No 425
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=31.93 E-value=1.1e+02 Score=28.68 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=51.4
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC-----HHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----SDMIAKL 607 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~ 607 (922)
+||+++.|.- |.-+..++...... ..||.+...... +....++.+..+-.++.+.. .. +.++.+.
T Consensus 3 ~riavl~Sg~-----Gsnl~ali~~~~~~~l~~eI~~Visn~~-~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~ 76 (211)
T 3p9x_A 3 KRVAIFASGS-----GTNAEAIIQSQKAGQLPCEVALLITDKP-GAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQ 76 (211)
T ss_dssp CEEEEECCTT-----CHHHHHHHHHHHTTCCSSEEEEEEESCS-SSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CEEEEEEeCC-----chHHHHHHHHHHcCCCCcEEEEEEECCC-CcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHH
Confidence 6899887642 23455555544222 368765444322 23455666666666554432 22 4678999
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 608 INEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+++.++|++|-. |++.--...++.
T Consensus 77 l~~~~~Dliv~a-gy~~Il~~~~l~ 100 (211)
T 3p9x_A 77 LKEKQIDFVVLA-GYMRLVGPTLLG 100 (211)
T ss_dssp HHHTTCCEEEES-SCCSCCCHHHHH
T ss_pred HHhcCCCEEEEe-CchhhcCHHHHh
Confidence 999999999744 454433334444
No 426
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=31.84 E-value=69 Score=32.67 Aligned_cols=77 Identities=6% Similarity=0.025 Sum_probs=47.3
Q ss_pred cceeeeecCCCCCChhH-hhhhHHhhcCCCCCeEEEEEecCCC---CChHHHHHHHhccCceEECCCCC-----HHHHHH
Q 002431 536 RLRVGYVSSDFGNHPLS-HLMGSVFGMHNKENVEVFCYALSPN---DGTEWRQRTQSEAEHFVDVSAMS-----SDMIAK 606 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~-~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 606 (922)
++||.|+.+ ...+ ..+..+.+ .++||.+..+.++ ..+++.+..+.....++....+. +.++.+
T Consensus 22 ~mrIvf~G~----~~fa~~~L~~L~~----~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 93 (329)
T 2bw0_A 22 SMKIAVIGQ----SLFGQEVYCHLRK----EGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVA 93 (329)
T ss_dssp CCEEEEECC----HHHHHHHHHHHHH----TTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHH
T ss_pred CCEEEEEcC----cHHHHHHHHHHHH----CCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHH
Confidence 489999952 2233 23344433 3578876555432 22456666666666666655443 267888
Q ss_pred HHHhCCCeEEEcCC
Q 002431 607 LINEDKIQILINLN 620 (922)
Q Consensus 607 ~i~~~~~dil~~~~ 620 (922)
.+++.++|++|-.+
T Consensus 94 ~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 94 KYQALGAELNVLPF 107 (329)
T ss_dssp HHHTTCCSEEEESS
T ss_pred HHHhcCCCEEEEee
Confidence 99999999998554
No 427
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=31.82 E-value=1.2e+02 Score=31.11 Aligned_cols=76 Identities=7% Similarity=-0.039 Sum_probs=51.2
Q ss_pred HHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc
Q 002431 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA 811 (922)
Q Consensus 733 ~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~ 811 (922)
..+.+.+.|+..++-+.+. . .++.++.+++.|+. . ..+..+.++ -..+|+++.+.|-.- ...+..|+..
T Consensus 20 ~~~~l~~~~~~~lvav~d~-~-~~~~~~~~~~~g~~-~------~~~~~~~l~-~~~~D~V~i~tp~~~h~~~~~~al~~ 89 (354)
T 3db2_A 20 MADAYTKSEKLKLVTCYSR-T-EDKREKFGKRYNCA-G------DATMEALLA-REDVEMVIITVPNDKHAEVIEQCARS 89 (354)
T ss_dssp HHHHHTTCSSEEEEEEECS-S-HHHHHHHHHHHTCC-C------CSSHHHHHH-CSSCCEEEECSCTTSHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEEECC-C-HHHHHHHHHHcCCC-C------cCCHHHHhc-CCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 4455677888887755443 2 55667777777873 1 233455553 256899988877666 6667899999
Q ss_pred CCCeeee
Q 002431 812 GLPMITL 818 (922)
Q Consensus 812 g~Pvv~~ 818 (922)
|++|++=
T Consensus 90 gk~vl~E 96 (354)
T 3db2_A 90 GKHIYVE 96 (354)
T ss_dssp TCEEEEE
T ss_pred CCEEEEc
Confidence 9999963
No 428
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=31.19 E-value=2.9e+02 Score=24.78 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=67.8
Q ss_pred EEEEecCChhh--HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc------cCCcEEecCCCCCChhHHHHHHHcCCCe
Q 002431 744 ALWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS------SLADLFLDTPLCNAHTTGTDILWAGLPM 815 (922)
Q Consensus 744 ~l~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~------~~~dv~l~~~~~~g~~t~~eal~~g~Pv 815 (922)
+.++.|+..+. -+.....++++|++ -.|...+--...+.+.-| +.++|++-----+++...+=|-..-+||
T Consensus 10 V~IimgS~SD~~v~~~a~~~L~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PV 88 (174)
T 3lp6_A 10 VGVIMGSDSDWPVMADAAAALAEFDIP-AEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPV 88 (174)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCSSCE
T ss_pred EEEEECcHHhHHHHHHHHHHHHHcCCC-EEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccCCCE
Confidence 33455544331 24556677899994 567777732223333333 6688888666667777777777789999
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCcc----cc-CCH---HHHHHHHHHHhcCHHHHHHHHH
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEM----IV-NSM---KEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~----i~-~~~---~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
|..+-..-.-.--+++|.-+..|... |+ ++. .-++..++.+ .|+++++.++.
T Consensus 89 IgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~-~d~~l~~kl~~ 148 (174)
T 3lp6_A 89 IGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGA-ANPQLRARIVA 148 (174)
T ss_dssp EEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred EEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 97664422111123566555555411 21 222 2333333343 47776665554
No 429
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=30.78 E-value=2.1e+02 Score=23.09 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=59.3
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----CCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA-----GLP 814 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~-----g~P 814 (922)
+++++.+.+.....+...+...|.. |.... ...+.+..+ ...|++ +|.. |...|...++.+.. .+|
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~---v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 77 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYE---TLQTR--EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIP 77 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE---EEEES--CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcE---EEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCc
Confidence 5677787777678888888887762 33322 233333322 235665 5553 44458888887763 789
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
||.+.+..-..... . ....|..+ ++.. +.+++.+.+.++.
T Consensus 78 ii~~s~~~~~~~~~-~-~~~~g~~~-~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 78 VVAVTAFAMKGDEE-R-IREGGCEA-YISKPISVVHFLETIKRLL 119 (124)
T ss_dssp EEEEC------CHH-H-HHHHTCSE-EECSSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHH-H-HHhCCCCE-EEeCCCCHHHHHHHHHHHH
Confidence 99876643322221 1 22347777 6653 5666666555443
No 430
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.19 E-value=1.9e+02 Score=23.39 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=62.4
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-C-CCChhHHHHHHH-----cC
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-L-CNAHTTGTDILW-----AG 812 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~-~~g~~t~~eal~-----~g 812 (922)
.+++++.+.+.....+...+.+.|. +|..... ..+.+..+ ...|++ +|.. + ...|...++.+. .+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGF---TVDETTD--GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTC---EEEEECC--HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc---eEEEecC--HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccC
Confidence 3677778777667888888888887 3443332 33333322 235665 5553 3 334777787775 47
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
+|||.+ +..-.... .-....|..+ ++.. +.+++...+.++.
T Consensus 81 ~~ii~~-~~~~~~~~--~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQ--HRKLKAHADE-YVAKPVDADQLVERAGALI 123 (127)
T ss_dssp SCEEEE-ECGGGHHH--HHHSTTCCSE-EEESSCCHHHHHHHHHHHH
T ss_pred CCEEEE-ecCCchhH--HHHHHhCcch-heeCCCCHHHHHHHHHHHH
Confidence 999988 54332222 1233457777 6653 6677666665544
No 431
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.02 E-value=3.4e+02 Score=25.14 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002431 252 ADMAILYYKQAI--GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (922)
Q Consensus 252 ~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 300 (922)
..++..+|..+. ++....+..|...|..+...|++.+|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344445554444 3344445555555666666666666666666666544
No 432
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=29.69 E-value=3.2e+02 Score=26.18 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=66.0
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEEe-cC-CCCCChhHHHHHHH---cCCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLFL-DT-PLCNAHTTGTDILW---AGLP 814 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~l-~~-~~~~g~~t~~eal~---~g~P 814 (922)
+.+++++.+.+.....+...+.+.|. +|..... ..+.+..+ ...|+++ |- .|...|..+++.+. ..+|
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~a~~--~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~p 203 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGY---QCKTAND--GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLP 203 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTS---EEEEECC--SHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC---EEEEECC--HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCc
Confidence 34677788877767788888888887 2544432 23333332 2356664 54 35444777776664 4799
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
||.+.+....... .-....|..+ ++.. +.+++.+.+.++.
T Consensus 204 iI~lt~~~~~~~~--~~~~~~G~~~-~l~KP~~~~~L~~~l~~~~ 245 (254)
T 2ayx_A 204 VIGVTANALAEEK--QRCLESGMDS-CLSKPVTLDVIKQTLTLYA 245 (254)
T ss_dssp EEEEESSTTSHHH--HHHHHCCCEE-EEESSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHH--HHHHHcCCce-EEECCCCHHHHHHHHHHHH
Confidence 9988776443322 2234568888 7764 6777776666553
No 433
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=29.56 E-value=1.2e+02 Score=29.59 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCCCceEEcC-CCCcHHHHHhc--cCCcEEecCCCCCChhH----HHHHHH-cC--CCeeeecCCcchh
Q 002431 756 MRLRAYAVAQGVQPDQIIFTD-VAMKQEHIRRS--SLADLFLDTPLCNAHTT----GTDILW-AG--LPMITLPLEKMAT 825 (922)
Q Consensus 756 ~~l~~~~~~~g~~~~rv~f~~-~~~~~~~~~~~--~~~dv~l~~~~~~g~~t----~~eal~-~g--~Pvv~~~~~~~~~ 825 (922)
.-+...++..|. +|+.+| .+|.+++.... ...|++.-++..+.+.+ +++.+- .| +||+. .|....
T Consensus 141 ~iva~~L~~~G~---~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v-GG~~~~- 215 (258)
T 2i2x_B 141 NIVTALLRANGY---NVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC-GGGAVN- 215 (258)
T ss_dssp HHHHHHHHHTTC---EEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE-ESTTCC-
T ss_pred HHHHHHHHHCCC---EEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE-ECccCC-
Confidence 344555666666 366666 35566654433 34666665544433333 344442 23 55553 332222
Q ss_pred hhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002431 826 RVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (922)
Q Consensus 826 r~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~d~~~~~~~~~ 868 (922)
..+...+|. + ..+.|..+-++.+.++.......+++|+
T Consensus 216 ---~~~~~~iga-d-~~~~da~~av~~~~~l~~~~~~~~~~~~ 253 (258)
T 2i2x_B 216 ---QDFVSQFAL-G-VYGEEAADAPKIADAIIAGTTDVTELRE 253 (258)
T ss_dssp ---HHHHHTSTT-E-EECSSTTHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---HHHHHHcCC-e-EEECCHHHHHHHHHHHHcchhhHHHHHH
Confidence 223345573 4 5677888888999988865433333443
No 434
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.38 E-value=69 Score=31.67 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=52.5
Q ss_pred CcccceeeeecCC-----CCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHH
Q 002431 533 GLRRLRVGYVSSD-----FGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKL 607 (922)
Q Consensus 533 ~~~~~rig~~s~~-----~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (922)
.++..+||++.++ +.+.-...++.++-+...+.++++.++.... +. . ...++.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~-~----------------~~~~~~~~ 64 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET---EE-E----------------IFNGVVKM 64 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS---HH-H----------------HHHHHHHH
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC---CH-H----------------HHHHHHHH
Confidence 4567789999998 6665555677777666666678887754321 11 1 12356667
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhhcCCCceEEe
Q 002431 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVS 641 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~~~apvq~~ 641 (922)
+.+.++|-+|-............+....-||.+.
T Consensus 65 ~~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 65 VQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLI 98 (292)
T ss_dssp HHTTCCCEEEESCCBTTCHHHHHHHHTTCCEEEE
T ss_pred HHcCCCCEEEEeCCCCChHHHHHHHHCCCCEEEE
Confidence 7788888887654443322233333345576554
No 435
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=29.34 E-value=3.2e+02 Score=27.27 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=52.1
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCC--CCeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC----HHHH
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNK--ENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS----SDMI 604 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~ 604 (922)
..+++||+++.|.. |+.+..++..... -..||.+......+ ..+..+..+-.++.++. .+ +.++
T Consensus 102 ~~~~~ri~vl~Sg~-----g~nl~~ll~~~~~g~l~~~I~~Visn~~~---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 173 (302)
T 3o1l_A 102 SAQKKRVVLMASRE-----SHCLADLLHRWHSDELDCDIACVISNHQD---LRSMVEWHDIPYYHVPVDPKDKEPAFAEV 173 (302)
T ss_dssp TTSCCEEEEEECSC-----CHHHHHHHHHHHTTCSCSEEEEEEESSST---THHHHHTTTCCEEECCCCSSCCHHHHHHH
T ss_pred cCCCcEEEEEEeCC-----chhHHHHHHHHHCCCCCcEEEEEEECcHH---HHHHHHHcCCCEEEcCCCcCCHHHHHHHH
Confidence 34578999887654 2345555544322 23687654433222 23445555555655531 12 4578
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
.+.+++.++|++| +.|++.--...++.
T Consensus 174 ~~~l~~~~~DliV-lagym~IL~~~~l~ 200 (302)
T 3o1l_A 174 SRLVGHHQADVVV-LARYMQILPPQLCR 200 (302)
T ss_dssp HHHHHHTTCSEEE-ESSCCSCCCTTHHH
T ss_pred HHHHHHhCCCEEE-HhHhhhhcCHHHHh
Confidence 9999999999886 55566443334444
No 436
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.20 E-value=1.1e+02 Score=30.20 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=58.0
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCC
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 612 (922)
.++..+||++.+++.+.-...++.++-+...+.++++.++....+ .. ...++.+.+.+.+
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~--~~------------------~~~~~~~~l~~~~ 64 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAED--IV------------------REREAVGQFFERR 64 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTC--HH------------------HHHHHHHHHHHTT
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCC--HH------------------HHHHHHHHHHHCC
Confidence 456678999999876544456677776666777899888764321 11 1134556667788
Q ss_pred CeEEEcCCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCc
Q 002431 613 IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662 (922)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~ 662 (922)
+|-+|-.........+..+....-|+++.. .... .+.++++.+|..
T Consensus 65 vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~--~~~~--~~~~~~V~~D~~ 110 (291)
T 3egc_A 65 VDGLILAPSEGEHDYLRTELPKTFPIVAVN--RELR--IPGCGAVLSENV 110 (291)
T ss_dssp CSEEEECCCSSCCHHHHHSSCTTSCEEEES--SCCC--CTTCEEEEECHH
T ss_pred CCEEEEeCCCCChHHHHHhhccCCCEEEEe--cccC--CCCCCEEEECcH
Confidence 998875443331111222222334665433 2211 133566665553
No 437
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=29.12 E-value=79 Score=31.81 Aligned_cols=76 Identities=4% Similarity=0.051 Sum_probs=48.5
Q ss_pred ceeeeecCCCCCChhH-hhhhHHhhcCCCCCeEEEEEecCCCCC------hHHHHHHHhccCceEECCCCCHHHHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLS-HLMGSVFGMHNKENVEVFCYALSPNDG------TEWRQRTQSEAEHFVDVSAMSSDMIAKLIN 609 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (922)
|||.|+.+ +..+ ..+..|+.. ++||.+..+.++.. +.+.+..+...-.++.....++.++.+.++
T Consensus 1 mrivf~gt----~~fa~~~L~~L~~~----~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~ 72 (305)
T 2bln_A 1 MKTVVFAY----HDMGCLGIEALLAA----GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIA 72 (305)
T ss_dssp CEEEEEEC----HHHHHHHHHHHHHT----TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHH
T ss_pred CEEEEEEc----CHHHHHHHHHHHHC----CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHH
Confidence 57777764 3322 344555543 57887666554331 235666666676666666666678889999
Q ss_pred hCCCeEEEcCC
Q 002431 610 EDKIQILINLN 620 (922)
Q Consensus 610 ~~~~dil~~~~ 620 (922)
+.++|++|-.+
T Consensus 73 ~~~~Dliv~~~ 83 (305)
T 2bln_A 73 QLSPDVIFSFY 83 (305)
T ss_dssp HTCCSEEEEES
T ss_pred hcCCCEEEEec
Confidence 99999998544
No 438
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=28.82 E-value=1.8e+02 Score=28.54 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=51.0
Q ss_pred CcccceeeeecCCCCC--ChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHh
Q 002431 533 GLRRLRVGYVSSDFGN--HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINE 610 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~--h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 610 (922)
.++.-+||++.++... .-...++.++-+...+.++++.++......+ ...++.+.+.+
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--------------------~~~~~~~~l~~ 64 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKD--------------------SMVPIRYILET 64 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGG--------------------TTHHHHHHHHH
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchh--------------------HHHHHHHHHHc
Confidence 4566789999998764 3344677777777788889988775432111 11345555667
Q ss_pred CCCeEEEcCCCcCCCCchhhhhcCCCceEEe
Q 002431 611 DKIQILINLNGYTKGARNEIFAMQPAPIQVS 641 (922)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~~~~apvq~~ 641 (922)
.++|-+|-.........+..+....-|+++.
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTH 95 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEE
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEEE
Confidence 7888776443222222223333344576543
No 439
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=28.77 E-value=1.2e+02 Score=30.60 Aligned_cols=78 Identities=8% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccceeeeecCCCCCChhH-hhhhHHhhcCCCCCeEEEEEecCCCC---------ChHHHHHHHhccCceEECCCCCHHHH
Q 002431 535 RRLRVGYVSSDFGNHPLS-HLMGSVFGMHNKENVEVFCYALSPND---------GTEWRQRTQSEAEHFVDVSAMSSDMI 604 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (922)
+++||.|+.+. ..+ ..+..|+. .++||.+..+.++. ..++.+..+...-.++....+++.++
T Consensus 6 ~~mrivf~Gt~----~fa~~~L~~L~~----~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~ 77 (318)
T 3q0i_A 6 QSLRIVFAGTP----DFAARHLAALLS----SEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDES 77 (318)
T ss_dssp -CCEEEEECCS----HHHHHHHHHHHT----SSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHH
T ss_pred cCCEEEEEecC----HHHHHHHHHHHH----CCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHH
Confidence 36899998853 222 23344443 25888766665432 13455666666666665555666789
Q ss_pred HHHHHhCCCeEEEcCC
Q 002431 605 AKLINEDKIQILINLN 620 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~ 620 (922)
.+.+++.++|++|-.+
T Consensus 78 ~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 78 KQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHTTCCSEEEESS
T ss_pred HHHHHhcCCCEEEEeC
Confidence 9999999999998544
No 440
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=28.72 E-value=74 Score=30.94 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=65.5
Q ss_pred hCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCC----cHHHHHhc--cCCcEEecCCCCCChhHHHHH----
Q 002431 739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM----KQEHIRRS--SLADLFLDTPLCNAHTTGTDI---- 808 (922)
Q Consensus 739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~----~~~~~~~~--~~~dv~l~~~~~~g~~t~~ea---- 808 (922)
..++-++++.... .+++.|.+.+.+.|+.-+.+...-..+ ..+....+ ...|+++.||+.+-- ..++.
T Consensus 130 ~~~~~~vL~~rg~-~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~ 207 (254)
T 4es6_A 130 RVHDPKVLIMRGE-GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ-NLYQLAAAD 207 (254)
T ss_dssp CSSSCEEEEEECS-SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH-HHHHHHGGG
T ss_pred cCCCCEEEEEcCC-ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHhhHH
Confidence 4556665555422 236778888889998655555443322 12333322 468999977764331 11222
Q ss_pred --HHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHH
Q 002431 809 --LWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVS 855 (922)
Q Consensus 809 --l~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~ 855 (922)
...++++++ .|..++..+...|+....++ .+.+++++.+.+
T Consensus 208 ~~~l~~~~~~a------IG~~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 208 WPEIGRLPLFV------PSPRVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHHTTSCEEE------SSHHHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHHhCCeEEE------ECHHHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 245788887 66778888999999772334 467777776654
No 441
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=28.52 E-value=42 Score=35.30 Aligned_cols=91 Identities=16% Similarity=-0.012 Sum_probs=61.4
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCC
Q 002431 718 CFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTP 797 (922)
Q Consensus 718 ~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~ 797 (922)
.+++..+.|-..+.....+....|++.|+-+.+.. .++.++.+++.|+. + .| .+.++.++- ..+|+++-+.
T Consensus 32 G~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~--~~~a~~~a~~~g~~--~-~y---~d~~ell~~-~~iDaV~Iat 102 (393)
T 4fb5_A 32 GTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEAN--AGLAEARAGEFGFE--K-AT---ADWRALIAD-PEVDVVSVTT 102 (393)
T ss_dssp CCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHHHHHTCS--E-EE---SCHHHHHHC-TTCCEEEECS
T ss_pred cCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCC--HHHHHHHHHHhCCC--e-ec---CCHHHHhcC-CCCcEEEECC
Confidence 34445566655555556666778999987776542 45677788888983 2 22 335666643 4588887776
Q ss_pred CCCC-hhHHHHHHHcCCCeee
Q 002431 798 LCNA-HTTGTDILWAGLPMIT 817 (922)
Q Consensus 798 ~~~g-~~t~~eal~~g~Pvv~ 817 (922)
|-.- .-.++.|+.+|++|++
T Consensus 103 P~~~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 103 PNQFHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp CGGGHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHhcCCeEEE
Confidence 6555 7778899999999996
No 442
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=28.24 E-value=46 Score=33.98 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=26.9
Q ss_pred cCCcEEecCCCCCChhHHHHHHHcCCCeeeecCCcc
Q 002431 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM 823 (922)
Q Consensus 788 ~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~~~~~ 823 (922)
..-|++||||. +.|||+++|+-+|.-.|...-+..
T Consensus 251 ~~~~~VlDpF~-GsGtt~~aa~~~gr~~ig~e~~~~ 285 (323)
T 1boo_A 251 EPDDLVVDIFG-GSNTTGLVAERESRKWISFEMKPE 285 (323)
T ss_dssp CTTCEEEETTC-TTCHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCEEEECCC-CCCHHHHHHHHcCCCEEEEeCCHH
Confidence 56799999864 338999999999999886554433
No 443
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.19 E-value=2.9e+02 Score=23.75 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=59.0
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceE-EcCCCCcHHHHHhcc----CCcEE-ecCC-CCCChhHHHHHHH---cCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRSS----LADLF-LDTP-LCNAHTTGTDILW---AGL 813 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~-f~~~~~~~~~~~~~~----~~dv~-l~~~-~~~g~~t~~eal~---~g~ 813 (922)
+++|+.+.+.....++..+.+.|.. |+ ... ...+.+..+. ..|++ +|.. +-..|..+++.+. -.+
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~g~~---v~~~~~--~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEGFN---IIDTAA--DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE---EEEEES--SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe---EEEEEC--CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCC
Confidence 5666666666567777777777652 22 221 1233333322 34655 5553 3334777776664 478
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-...+ .-....|..+ ++.. +.+++.+.+.++.
T Consensus 113 ~ii~ls~~~~~~~~--~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 113 RVIMISALGKEQLV--KDCLIKGAKT-FIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CEEEEESCCCHHHH--HHHHHTTCSE-EEESSCCHHHHHHHHHHTT
T ss_pred cEEEEeccCcHHHH--HHHHHcCCCE-EEeCCCCHHHHHHHHHHHh
Confidence 99987765433322 2234558777 6654 5667666665543
No 444
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=27.98 E-value=2.4e+02 Score=22.89 Aligned_cols=107 Identities=8% Similarity=-0.004 Sum_probs=64.3
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecC-CCCCChhHHHHHHH---cCCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDT-PLCNAHTTGTDILW---AGLP 814 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~-~~~~g~~t~~eal~---~g~P 814 (922)
+.+++++.+.+.....+...+...|. .|.... +..+.+..+. ..|++ +|. .|-..|...++.+. .++|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGF---AVKMHQ--SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIP 77 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTC---EEEEES--CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc---EEEEeC--CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCC
Confidence 45677888887767888888888776 244332 2455554443 35766 455 34445777777764 4789
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
||.+.+..-..... -....|..+ ++.. +.+++.+.+.+.
T Consensus 78 ii~~s~~~~~~~~~--~~~~~ga~~-~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 78 SIVITGHGDVPMAV--EAMKAGAVD-FIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp EEEEECTTCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHH--HHHHhCHHH-heeCCCCHHHHHHHHHHH
Confidence 99877653332222 223458877 7654 566665555443
No 445
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.96 E-value=89 Score=33.49 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=28.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC----------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002431 6 AHQMYKSGSYKQALEHSNSVYERNP----------LRTDNLLLLGAIYYQLHDYDMCIARNEEALRL 62 (922)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 62 (922)
-+.|++.++..-+..+++.+-...+ .-...++.+|..++..++|.+|.+.+..|++.
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3555666666666555554433221 01233445555555555555555555555554
No 446
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.41 E-value=1.1e+02 Score=32.78 Aligned_cols=87 Identities=8% Similarity=0.013 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhhC-----CC-------ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C--------c
Q 002431 13 GSYKQALEHSNSVYERN-----PL-------RT----DNLLLLGAIYYQLHDYDMCIARNEEALRLEP--R--------F 66 (922)
Q Consensus 13 g~~~~A~~~~~~~l~~~-----p~-------~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~--------~ 66 (922)
...++|...+.+++..- |+ .- .....+-.+|++.++..-+..+++.+-...+ . .
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 34567777777776531 11 11 1123345778888988888888866543322 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 002431 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL-RPN 99 (922)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 99 (922)
....+.+|..+...++|.+|.+.+..|+.. .|.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 456677788888888888888888777776 443
No 447
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=27.35 E-value=92 Score=27.46 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=40.9
Q ss_pred HHHHhccCCcEEecCCCCCChhHHH---HHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHH
Q 002431 782 EHIRRSSLADLFLDTPLCNAHTTGT---DILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSL 856 (922)
Q Consensus 782 ~~~~~~~~~dv~l~~~~~~g~~t~~---eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l 856 (922)
.-++.++.||+++--......-|.. =|.+.|.|||++.-+.....+++.+-..-..+. +.. -+.++..+++.++
T Consensus 61 ~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~-~~~~~Y~~~el~~il~~f 139 (152)
T 4fyk_A 61 QNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSR-FQVWDYAEGEVETMLDRY 139 (152)
T ss_dssp HHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSS-EEEEECCTTCHHHHHHHH
T ss_pred HHHHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCe-EEEEEecHHHHHHHHHHH
Confidence 3466688899997543333344444 478999999986654333444533332222122 222 1225555555555
Q ss_pred h
Q 002431 857 A 857 (922)
Q Consensus 857 ~ 857 (922)
.
T Consensus 140 ~ 140 (152)
T 4fyk_A 140 F 140 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 448
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=27.29 E-value=58 Score=29.23 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCh----hh---------HHHHHHHHHHcCCCCCceEEcCC
Q 002431 728 EIFNTWCNILRRVPNSALWLLRFPA----AG---------EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 728 ~~~~~~~~il~~~p~~~l~~~~~~~----~~---------~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
..|+.++.+++..|...+.|.|... .. ...+...+.+.||+++||...|+
T Consensus 32 ~~L~~la~~L~~~~~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~ 94 (164)
T 1r1m_A 32 DNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4566677778888888888888431 10 13556677788999999988874
No 449
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.04 E-value=2.9e+02 Score=23.44 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=65.3
Q ss_pred CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH---cC
Q 002431 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW---AG 812 (922)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~---~g 812 (922)
.++.+++|+.+.+.....+...+.+.|- ...|.... ...+.+..+ ...|++ +|.. +-..|...++.+. -.
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~-~~~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGS-VNVVGEAD--DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSS-EEEEEEES--SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCC-eEEEEEeC--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 3456777888777667788888888773 12232222 233333332 235665 5553 3344777777664 47
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
+|||.+.+..-...+- -....|..+ ++.. +.+++.+.+.++..
T Consensus 90 ~~ii~~s~~~~~~~~~--~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 90 TRVLLISAHDEPAIVY--QALQQGAAG-FLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp CEEEEEESCCCHHHHH--HHHHTTCSE-EEETTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHH--HHHHcCCCE-EEecCCCHHHHHHHHHHHHc
Confidence 8899877764433322 233558887 7754 66777766666554
No 450
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=27.01 E-value=3.9e+02 Score=25.33 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=67.2
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH---cCC
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW---AGL 813 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~---~g~ 813 (922)
+..+++|+.+.+.....+...+...|. .|.... +..+.+..+ ...|++ +|- .|-..|..+++.+. ..+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 96 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGF---EVYTAT--NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDA 96 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC---EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 345788888877767788888888776 244332 234444332 235665 565 35445888887775 368
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-....- -....|..+ ++.. +.+++.+.+.++.
T Consensus 97 ~ii~lt~~~~~~~~~--~~~~~Ga~~-yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 97 PALFLTARDSLQDKI--AGLTLGGDD-YVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp CEEEEECSTTHHHHH--HHHTSTTCE-EEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHH--HHHHcCCcE-EEeCCCCHHHHHHHHHHHH
Confidence 999877754333222 223458888 7764 7778777666554
No 451
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=27.01 E-value=2.5e+02 Score=22.73 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=59.9
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecCC-CCCChhHHHHHHH-----cCCC
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDTP-LCNAHTTGTDILW-----AGLP 814 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~~-~~~g~~t~~eal~-----~g~P 814 (922)
+++++.+.+.....+...+.+.|. +|.... ...+.+..+. ..|++ +|.. |-..|...++.+. .++|
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~---~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGF---QPVEAE--DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEEC--SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCc---eEEEeC--CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCC
Confidence 567788877767788888888776 244332 2455555443 25665 5553 4334788888876 4789
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHH
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVS 855 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~ 855 (922)
||.+.+..-..... -....|..+ ++.. +.+++.+.+.+
T Consensus 79 ii~~s~~~~~~~~~--~~~~~ga~~-~l~Kp~~~~~l~~~i~~ 118 (127)
T 2jba_A 79 VVMLTARGEEEDRV--RGLETGADD-CITKPFSPKELVARIKA 118 (127)
T ss_dssp EEEEEETTHHHHHH--TTCCCSCSE-EEEESCCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHH--HHHhcCCCe-EEeCCCCHHHHHHHHHH
Confidence 99776543222111 111236666 6653 56666555433
No 452
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.99 E-value=1.1e+02 Score=28.49 Aligned_cols=33 Identities=12% Similarity=-0.075 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002431 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (922)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (922)
...+.+|..++..++|.+|.+.+..+++..|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345666666666666666666666666665543
No 453
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=26.91 E-value=1.7e+02 Score=24.50 Aligned_cols=108 Identities=12% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA----- 811 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~----- 811 (922)
...+++++.+.+.....+...+...|. +|..... ..+.+..+ ...|++ +|.. +...|...++.+..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF---HIISADS--GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC---EEEEESS--HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe---EEEEeCC--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccC
Confidence 345677888777767888888988876 3544332 34444433 235776 4543 44448888887764
Q ss_pred CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 812 g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.+|||.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 81 ~~pii~~s~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKM--IGLQEYVVD-YITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TEEEEEEECTTCCCCSS--TTGGGGEEE-EEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHH--HHHhcCccE-EEeCCCCHHHHHHHHHHH
Confidence 68888776543221111 011235555 5543 555655544443
No 454
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=26.86 E-value=2e+02 Score=29.60 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=49.2
Q ss_pred HhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCe
Q 002431 737 LRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPM 815 (922)
Q Consensus 737 l~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pv 815 (922)
+...|+..++.+.+.. .++.+..+++.|+. ..+... .+..+.+.- ..+|+++.+.|..- ...+.+|+..|++|
T Consensus 25 l~~~~~~~lv~v~d~~--~~~~~~~a~~~~~~-~~~~~~--~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~aGk~V 98 (362)
T 1ydw_A 25 IHLAPNATISGVASRS--LEKAKAFATANNYP-ESTKIH--GSYESLLED-PEIDALYVPLPTSLHVEWAIKAAEKGKHI 98 (362)
T ss_dssp HHHCTTEEEEEEECSS--HHHHHHHHHHTTCC-TTCEEE--SSHHHHHHC-TTCCEEEECCCGGGHHHHHHHHHTTTCEE
T ss_pred HhhCCCcEEEEEEcCC--HHHHHHHHHHhCCC-CCCeee--CCHHHHhcC-CCCCEEEEcCChHHHHHHHHHHHHCCCeE
Confidence 4567888876555432 45667777888873 222222 124444431 25899988887666 55677999999999
Q ss_pred eee
Q 002431 816 ITL 818 (922)
Q Consensus 816 v~~ 818 (922)
++-
T Consensus 99 ~~E 101 (362)
T 1ydw_A 99 LLE 101 (362)
T ss_dssp EEC
T ss_pred EEe
Confidence 973
No 455
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=26.79 E-value=2.5e+02 Score=22.64 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=8.7
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 002431 74 ANAWKEKGDIDLAIRYYL 91 (922)
Q Consensus 74 a~~~~~~g~~~~A~~~~~ 91 (922)
...+..+|+|++|....+
T Consensus 47 ~sSLmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGN 64 (116)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcchhHHHHHHhcC
Confidence 344445555555554443
No 456
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.78 E-value=2.5e+02 Score=23.37 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---CCcEE-ecCC-CCCChhHHHHHHHc---
Q 002431 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---LADLF-LDTP-LCNAHTTGTDILWA--- 811 (922)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---~~dv~-l~~~-~~~g~~t~~eal~~--- 811 (922)
.|..+++++.+.+.....+...+.+.|. +|.... ...+.+..+. ..|++ +|.. +-..|...++.+..
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGA---EVTVHP--SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTC---EEEEES--SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCC---EEEEeC--CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 3456778888877767888888888776 344333 2345554433 36766 4553 43347888888764
Q ss_pred CCCeeeec-CC
Q 002431 812 GLPMITLP-LE 821 (922)
Q Consensus 812 g~Pvv~~~-~~ 821 (922)
++|||.+. +.
T Consensus 88 ~~~ii~ls~~~ 98 (138)
T 2b4a_A 88 QPSVLILTTGR 98 (138)
T ss_dssp CCEEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 78988776 43
No 457
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=26.67 E-value=1.5e+02 Score=29.52 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=56.0
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCCHHHHHHHHHhCC
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDK 612 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 612 (922)
.++..+||++.+++.+.-...++.++-+...+.++++.++....+. + ...++.+.+.+.+
T Consensus 12 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~-------------------~~~~~~~~l~~~~ 71 (303)
T 3kke_A 12 HSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPP-R-------------------GTQQLSRLVSEGR 71 (303)
T ss_dssp -----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTT-H-------------------HHHHHHHHHHSCS
T ss_pred hCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCCh-H-------------------HHHHHHHHHHhCC
Confidence 4566789999998876555567777777666677888877653321 1 1134556666778
Q ss_pred CeEEEcCCCcCCCC-chhhhhcCCCceEEeccccCCCCCCCcccEEEecCc
Q 002431 613 IQILINLNGYTKGA-RNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEF 662 (922)
Q Consensus 613 ~dil~~~~~~~~~~-~~~~~~~~~apvq~~~~g~~~t~g~~~~d~~~~d~~ 662 (922)
+|-+|-........ .+..+.. .-|+++.- .... + .++++.+|..
T Consensus 72 vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~--~~~~-~--~~~~V~~D~~ 116 (303)
T 3kke_A 72 VDGVLLQRREDFDDDMLAAVLE-GVPAVTIN--SRVP-G--RVGSVILDDQ 116 (303)
T ss_dssp SSEEEECCCTTCCHHHHHHHHT-TSCEEEES--CCCT-T--CCCEEEECHH
T ss_pred CcEEEEecCCCCcHHHHHHHhC-CCCEEEEC--CcCC-C--CCCEEEECcH
Confidence 88776554333222 2223333 45655433 2211 1 4556655543
No 458
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.60 E-value=95 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 002431 409 HANLASAYKDSGHVEAAIKSYKQA 432 (922)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~a 432 (922)
+...+..+.+.|+|++|+++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344455555555555555544444
No 459
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.49 E-value=1e+02 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAI 94 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al 94 (922)
..+...+..+...|+|++|+++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344556666666777777766666543
No 460
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=26.45 E-value=3.4e+02 Score=24.05 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=54.0
Q ss_pred EEEecCChhh--HHHHHHHHHHcCCCCCceEEcCC-CCcHHHHHh---c--cCCcEEecCCCCCChhHHHHHHHcCCCee
Q 002431 745 LWLLRFPAAG--EMRLRAYAVAQGVQPDQIIFTDV-AMKQEHIRR---S--SLADLFLDTPLCNAHTTGTDILWAGLPMI 816 (922)
Q Consensus 745 l~~~~~~~~~--~~~l~~~~~~~g~~~~rv~f~~~-~~~~~~~~~---~--~~~dv~l~~~~~~g~~t~~eal~~g~Pvv 816 (922)
.++.|+..+. -+.....++++|++ -.+...+- ...+....+ + +.++|++-----+++...+=|-..-+|||
T Consensus 7 ~Iimgs~SD~~v~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVI 85 (163)
T 3ors_A 7 AVIMGSSSDWKIMQESCNMLDYFEIP-YEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVI 85 (163)
T ss_dssp EEEESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEE
T ss_pred EEEECcHHHHHHHHHHHHHHHHcCCC-EEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCCCEE
Confidence 3455544331 24555677899994 56777772 222333332 2 34788886666677777777777889999
Q ss_pred eecCCcchhhhHHHHHHhcCCCC
Q 002431 817 TLPLEKMATRVAGSLCLATGLGE 839 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~ 839 (922)
..+-..-.-.--+++|.-+.+|.
T Consensus 86 gVP~~~~~l~G~dsLlS~vqmp~ 108 (163)
T 3ors_A 86 GVPIETKSLKGIDSLLSIVQMPG 108 (163)
T ss_dssp EEEECCTTTTTHHHHHHHHTCCT
T ss_pred EeeCCCCCCCCHHHHHHHhhCCC
Confidence 76643221111234555555554
No 461
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.44 E-value=1.1e+02 Score=30.84 Aligned_cols=77 Identities=4% Similarity=0.174 Sum_probs=48.6
Q ss_pred cceeeeecCCCCCChhH-hhhhHHhhcCCCCCeEEEEEecCCCC---------ChHHHHHHHhccCceEECCCCCHHHHH
Q 002431 536 RLRVGYVSSDFGNHPLS-HLMGSVFGMHNKENVEVFCYALSPND---------GTEWRQRTQSEAEHFVDVSAMSSDMIA 605 (922)
Q Consensus 536 ~~rig~~s~~~~~h~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (922)
+|||.|+.+. ..+ ..+..|++ .++||.+..+.++. ..++.+..++..-.++....+++.++.
T Consensus 2 ~mrivf~Gtp----~fa~~~L~~L~~----~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 2 SLKIVFAGTP----QFAVPTLRALID----SSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCEEEEEECS----GGGHHHHHHHHH----SSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CcEEEEECCC----HHHHHHHHHHHH----CCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 4789888753 221 23344443 35788776665432 133455566666566655556667889
Q ss_pred HHHHhCCCeEEEcCC
Q 002431 606 KLINEDKIQILINLN 620 (922)
Q Consensus 606 ~~i~~~~~dil~~~~ 620 (922)
+.+++.++|++|-.+
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 999999999998654
No 462
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=26.38 E-value=1.3e+02 Score=30.46 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=48.7
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g 812 (922)
.+.+.+.|+..++-+.+.. .++.++.+++.|+. + ...+..+.+.. ..+|+++.+.|-.- ...+.+|+..|
T Consensus 21 ~~~l~~~~~~~l~av~d~~--~~~~~~~~~~~~~~--~----~~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~al~~g 91 (330)
T 3e9m_A 21 VAGLRESAQAEVRGIASRR--LENAQKMAKELAIP--V----AYGSYEELCKD-ETIDIIYIPTYNQGHYSAAKLALSQG 91 (330)
T ss_dssp HHHHHHSSSEEEEEEBCSS--SHHHHHHHHHTTCC--C----CBSSHHHHHHC-TTCSEEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHhCCCcEEEEEEeCC--HHHHHHHHHHcCCC--c----eeCCHHHHhcC-CCCCEEEEcCCCHHHHHHHHHHHHCC
Confidence 3445567888877554432 44567777778873 1 12234555432 36899888877666 55678999999
Q ss_pred CCeee
Q 002431 813 LPMIT 817 (922)
Q Consensus 813 ~Pvv~ 817 (922)
.+|++
T Consensus 92 k~vl~ 96 (330)
T 3e9m_A 92 KPVLL 96 (330)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 99996
No 463
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.92 E-value=1.4e+02 Score=27.91 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=49.7
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCC--CeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC-----HHHHHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----SDMIAKL 607 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~ 607 (922)
.||+++.|+-+ ..+..++...... .+||.+....+.+.. ..++.+...-.++.+.. .. +.++.+.
T Consensus 1 ~riaVl~SG~G-----s~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~-~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~ 74 (209)
T 1meo_A 1 ARVAVLISGTG-----SNLQALIDSTREPNSSAQIDIVISNKAAVA-GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLV 74 (209)
T ss_dssp CEEEEEESSSC-----TTHHHHHHHHHSTTCSCEEEEEEESSTTCH-HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CeEEEEEECCc-----hHHHHHHHHHhcCCCCcEEEEEEeCCCChH-HHHHHHHcCCCEEEECccccCchhhhhHHHHHH
Confidence 37888776433 3455555443222 488876655544323 34455666655553332 22 3678899
Q ss_pred HHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 608 INEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
+++.++|++|-. |++.--...++.
T Consensus 75 l~~~~~Dliv~a-~y~~il~~~~l~ 98 (209)
T 1meo_A 75 LEEFSIDIVCLA-GFMRILSGPFVQ 98 (209)
T ss_dssp HHHTTCCEEEEE-SCCSCCCHHHHH
T ss_pred HHhcCCCEEEEc-chhhhCCHHHHh
Confidence 999999998644 344333334444
No 464
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.88 E-value=4e+02 Score=24.65 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002431 82 DIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131 (922)
Q Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 131 (922)
+..++..+|..+... .-..+..|...|..+...|++.+|.++|+..++..
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 355666666666543 34456666666777777777777777777776655
No 465
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=25.65 E-value=1.9e+02 Score=28.71 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=51.4
Q ss_pred CCC-CCHHHHHHHHHHHhhCCCeEEEEecCC---h-hhHHHHHHHHHHcCCCCCceEEcCC-----CCcHHHHHhccCCc
Q 002431 722 LYK-MDPEIFNTWCNILRRVPNSALWLLRFP---A-AGEMRLRAYAVAQGVQPDQIIFTDV-----AMKQEHIRRSSLAD 791 (922)
Q Consensus 722 ~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~---~-~~~~~l~~~~~~~g~~~~rv~f~~~-----~~~~~~~~~~~~~d 791 (922)
..| ..+.+++.+.+... -++.+++++... + ...+..++.++++|+ +.|..+.. .+.++..+.+..+|
T Consensus 36 edk~~~~~i~~~~v~lag-g~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~--~~v~~L~i~~r~~a~~~~~~~~l~~ad 112 (291)
T 3en0_A 36 EDKVHGREILQTFWSRSG-GNDAIIGIIPSASREPLLIGERYQTIFSDMGV--KELKVLDIRDRAQGDDSGYRLFVEQCT 112 (291)
T ss_dssp CCSSSCCHHHHHHHHHTT-GGGCEEEEECTTCSSHHHHHHHHHHHHHHHCC--SEEEECCCCSGGGGGCHHHHHHHHHCS
T ss_pred CCccChHHHHHHHHHHcC-CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCC--CeeEEEEecCccccCCHHHHHHHhcCC
Confidence 335 35555555444332 344677777432 1 113567888999998 34544442 23456677788899
Q ss_pred EEecCCCCCChhH---------------HHHHHHcC-CCee
Q 002431 792 LFLDTPLCNAHTT---------------GTDILWAG-LPMI 816 (922)
Q Consensus 792 v~l~~~~~~g~~t---------------~~eal~~g-~Pvv 816 (922)
++. .+||.| +-++...| +|++
T Consensus 113 ~I~----v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~ 149 (291)
T 3en0_A 113 GIF----MTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLA 149 (291)
T ss_dssp EEE----ECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEE
T ss_pred EEE----ECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEE
Confidence 877 555544 23555678 8877
No 466
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.64 E-value=1.4e+02 Score=24.33 Aligned_cols=61 Identities=20% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeeec
Q 002431 755 EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (922)
Q Consensus 755 ~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~~ 819 (922)
...+++.+++.|++ -.|.-.+.....+.. ..+|++|.+....-...-++..+.++||.+.+
T Consensus 20 ~~k~~~~~~~~gi~-~~i~a~~~~~~~~~~---~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 20 VSKMRAQAEKYEVP-VIIEAFPETLAGEKG---QNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp HHHHHHHHHHSCCS-EEEEEECSSSTTHHH---HHCSEEEECTTSGGGHHHHHHHSSSSCCCBCC
T ss_pred HHHHHHHHHHCCCC-eEEEEecHHHHHhhc---cCCCEEEEccchhhhHHHHHHHhcCCCceEEC
Confidence 36889999999995 445555554444443 55899997766666666677766444444333
No 467
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.38 E-value=3.8e+02 Score=24.28 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=67.6
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc--CCcEE-ecC-CCCCChhHHHHHHH---cCCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS--LADLF-LDT-PLCNAHTTGTDILW---AGLP 814 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~--~~dv~-l~~-~~~~g~~t~~eal~---~g~P 814 (922)
..+++++.+.+.....+...+...|. .|.... ...+.+..+. ..|++ +|- .|-..|..+++.+. .++|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGF---EVETFD--CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIP 78 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc---eEEEcC--CHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 34677888887767888888887776 244332 3455555543 35666 565 35445888887765 4799
Q ss_pred eeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhc
Q 002431 815 MITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLAL 858 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~~ 858 (922)
||.+.+..-....- . ....|..+ ++.. +.+++.+.+.++..
T Consensus 79 ii~ls~~~~~~~~~-~-a~~~Ga~~-~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 79 IVFITAHGDIPMTV-R-AMKAGAIE-FLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp EEEEESCTTSCCCH-H-HHHTTEEE-EEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHH-H-HHHCCCcE-EEeCCCCHHHHHHHHHHHHh
Confidence 99887654333222 1 22357777 7653 67777776665543
No 468
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=25.29 E-value=1.7e+02 Score=24.44 Aligned_cols=108 Identities=10% Similarity=0.006 Sum_probs=64.1
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcC-CCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHHc---CC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILWA---GL 813 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~~---g~ 813 (922)
..+++++.+.+.....++..+.+.| . +|..... ..+.+..+ ...|++ +|. .|-..|..+++.+.. .+
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~---~v~~~~~--~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 88 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIY---DVRVSET--DDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATV 88 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSE---EEEEECG--GGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCe---EEEEecc--HHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCC
Confidence 3577888887776788899998887 5 2333321 23333322 235665 454 343347666666554 78
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|||.+.+..-..... -....|..+ ++.. +.+++...+.++.
T Consensus 89 ~ii~~s~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 89 PLIAVSDELTSEQTR--VLVRMNASD-WLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp CEEEEESCCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHH--HHHHcCcHh-hccCCCCHHHHHHHHHHHh
Confidence 999887754333222 233458877 6653 6777766665554
No 469
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.03 E-value=2.8e+02 Score=22.61 Aligned_cols=108 Identities=9% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc---CC
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA---GL 813 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~---g~ 813 (922)
++.+++++.+.+.....+...+.+.|.. |.... ...+.+..+ ...|++ +|.. |...|...++.+.. .+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~---v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGAT---TVLAA--DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQT 80 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCE---EEEES--CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCce---EEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence 4567888888777678889999988862 44332 344555443 235766 4543 43347777776653 68
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHH
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSL 856 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~---~~~~~~~~~~~l 856 (922)
|||.+.+..-...+. -....|..+ ++.. +.+++.+.+.++
T Consensus 81 ~ii~~t~~~~~~~~~--~~~~~g~~~-~l~KP~~~~~~l~~~i~~~ 123 (130)
T 3eod_A 81 PVLVISATENMADIA--KALRLGVED-VLLKPVKDLNRLREMVFAC 123 (130)
T ss_dssp CEEEEECCCCHHHHH--HHHHHCCSE-EEESCC---CHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHH--HHHHcCCCE-EEeCCCCcHHHHHHHHHHH
Confidence 999877764433222 223458877 7654 344554444443
No 470
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.01 E-value=6e+02 Score=26.44 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhc-----
Q 002431 370 LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQ---ALLL----- 435 (922)
Q Consensus 370 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~----- 435 (922)
....-|..+|-.+++.+++.+|+..+..+-.. ..++.++|..+..+.... .-..++. ...-
T Consensus 301 ~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel-----ip~~lk~~~~~~~~~~~~~ 375 (489)
T 4gq4_A 301 EHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV-----IPNLLKEAASLLEAGSQGS 375 (489)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHTTCSSC
T ss_pred CcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh-----hhHHHHHhhhccccccccc
Confidence 34455666677777777777777777666442 234455554443332211 0001111 1111
Q ss_pred CCCCHHHHHHHHHhhcccCChhh
Q 002431 436 RPDFPEATCNLLHTLQCVCSWED 458 (922)
Q Consensus 436 ~p~~~~~~~~l~~~~~~~~~~~~ 458 (922)
-.+++..+.+++..+-..|.|+|
T Consensus 376 ~l~dp~c~a~lL~fyDgiC~WEE 398 (489)
T 4gq4_A 376 ALQDPECFAHLLRFYDGICKWEE 398 (489)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcchhhhhccccCCcchhhc
Confidence 13467777777776666666665
No 471
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=25.01 E-value=2e+02 Score=27.15 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=49.7
Q ss_pred hhCCCeEEEEecCChhhHHHHHHHHHHcCCC-CCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhHHHHHHH--cCCC
Q 002431 738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILW--AGLP 814 (922)
Q Consensus 738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~-~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~--~g~P 814 (922)
++.+++.+ .+|..|..--+|.+++++.|+. +.=|+ =-|.-|-|-.-.=|+|+ .|+|
T Consensus 145 ~~~~gaIv-aIGNAPTAL~~Lleli~~~~~~rPalVI--------------------G~PVGFVgAaESK~~L~~~~~vP 203 (229)
T 4au1_A 145 PKLEGAVV-AIGNAPTALFHLLNMLEDPACPRPAAII--------------------GCPVGFIGAAESKAALAVANPVP 203 (229)
T ss_dssp HHHTTCEE-EECSCHHHHHHHHHHTTSTTSCCCSEEE--------------------ECCCCSSSHHHHHHHHHHHCCSS
T ss_pred HHCCCcEE-EEeCcHHHHHHHHHHHHhcCCCCCCEEE--------------------EcCCCccChHHHHHHHHhCCCCC
Confidence 34577655 5687777666777777666652 22222 22334445444556664 4899
Q ss_pred eeeecCCcchhhhHHHHHHhc
Q 002431 815 MITLPLEKMATRVAGSLCLAT 835 (922)
Q Consensus 815 vv~~~~~~~~~r~~~~~~~~~ 835 (922)
-||..|..--|-+.+++++++
T Consensus 204 ~I~~~GrkGGS~vAaAivNAL 224 (229)
T 4au1_A 204 WVIVEGRLGGSAITVAAVNAL 224 (229)
T ss_dssp EEEECSSCCCHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHH
Confidence 999999888888888887764
No 472
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.91 E-value=2.9e+02 Score=22.80 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=61.4
Q ss_pred CeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-C-----CCChhHHHHHHH--
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-L-----CNAHTTGTDILW-- 810 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~-----~~g~~t~~eal~-- 810 (922)
..+++++.+.+.....+...+.+.|. .|.... ...+.+..+ ...|++ +|.. + -..|...++.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFS---KVITLS--SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSS---EEEEEC--CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCc---EEEEeC--CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 35677788777667788888887776 344332 234444333 235776 4543 3 333677776664
Q ss_pred -cCCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHh
Q 002431 811 -AGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 811 -~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
.++|||.+.+..-..... -....|..+ ++.. +.+++.+.+.++.
T Consensus 78 ~~~~~ii~ls~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAV--RGIKEGASD-FVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHH--HHHHTTCCE-EEEESCCHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHH--HHHHcCchh-eeeCCCCHHHHHHHHHHHH
Confidence 479999876653322222 233458777 6653 5666655554443
No 473
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.67 E-value=1.2e+02 Score=30.16 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=27.4
Q ss_pred ccceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEec
Q 002431 535 RRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYAL 574 (922)
Q Consensus 535 ~~~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~ 574 (922)
.+.+||++.++..+.-...++.++-+.....++++.++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 41 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAP 41 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECC
Confidence 3578999999885443445666666666666788887663
No 474
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.64 E-value=7.9e+02 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=20.5
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHhcCCCC
Q 002431 410 ANLASAY--KDSGHVEAAIKSYKQALLLRPDF 439 (922)
Q Consensus 410 ~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 439 (922)
..+..++ ...|++++|++.+++ +.+-|-+
T Consensus 540 l~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 540 LNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 3444444 778999999999988 5566765
No 475
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.63 E-value=5.2e+02 Score=26.30 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHhh-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002431 391 AIQDYIRAITI-----RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (922)
Q Consensus 391 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (922)
++..|.+++.. ...+.--|..+|-.+++.+++.+|++.+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55566666553 233455677888899999999999999887744
No 476
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.58 E-value=2.6e+02 Score=22.13 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=58.5
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH---cCCCee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW---AGLPMI 816 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~---~g~Pvv 816 (922)
+++++.+.+.....+...+...|. +|..... ..+.+..+ ...|++ +|.. |...|...++.+. .++|+|
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~~--~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii 77 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGY---EIDTAEN--GEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKII 77 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---EEEEESS--HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC---EEEEeCC--HHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEE
Confidence 467778777767888888888776 3444332 33443332 335765 5653 4444777777764 478998
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHH
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVS 855 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~ 855 (922)
.+.+..-.. .-....|..+ ++.. +.+++...+.+
T Consensus 78 ~~s~~~~~~----~~~~~~g~~~-~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 78 LLTAYSHYR----SDMSSWAADE-YVVKSFNFDELKEKVKK 113 (116)
T ss_dssp EEESCGGGG----GCGGGGGSSE-EEECCSSTHHHHHHHHH
T ss_pred EEECCcchH----HHHHhccccc-eEECCCCHHHHHHHHHH
Confidence 776643222 1122346666 6653 55565554443
No 477
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.52 E-value=3e+02 Score=22.83 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=60.0
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH---cCCCee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW---AGLPMI 816 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~---~g~Pvv 816 (922)
+++++.+.+.....+...+...|. .|.... ...+.+..+ ...|++ +|.. |...|..+++.+. ..+|||
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii 80 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPY---DIFHVE--TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVI 80 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSS---EEEEES--SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCc---eEEEeC--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 567777777667777777776665 244332 233433332 235766 5553 4444887777765 468888
Q ss_pred eecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.+.+..-..... -....|..+ ++.. +.+++...+.++
T Consensus 81 ~ls~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 81 IATAHGSVDLAV--NLIQKGAED-FLEKPINADRLKTSVALH 119 (137)
T ss_dssp EEESSCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred EEEecCcHHHHH--HHHHCCccE-EEeCCCCHHHHHHHHHHH
Confidence 776653332222 123458877 7654 566666555443
No 478
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=24.27 E-value=86 Score=32.21 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=58.9
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCCC------------HHHH
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS------------SDMI 604 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 604 (922)
.||+++.+ .+++|.-...+++.| ++|+|++.+.+.+. +.+.+.++.....++.+.+-. .+.+
T Consensus 4 k~i~ILGs---TGSIG~~tldVi~~~--~~~~vvaL~a~~n~-~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l 77 (376)
T 3a06_A 4 RTLVILGA---TGSIGTQTLDVLKKV--KGIRLIGISFHSNL-ELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSI 77 (376)
T ss_dssp EEEEEETT---TSHHHHHHHHHHHHS--CSEEEEEEEESSCH-HHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHH
T ss_pred ceEEEECC---CCHHHHHHHHHHHhC--CCeEEEEEEccCCH-HHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHH
Confidence 57888875 478998888999988 57999999765443 335555665555555332211 2345
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhh
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFA 632 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~ 632 (922)
.+.+...++|+++.---+..|-.+.+.+
T Consensus 78 ~el~~~~~~D~Vv~AivG~aGL~ptlaA 105 (376)
T 3a06_A 78 EEMLEALKPDITMVAVSGFSGLRAVLAS 105 (376)
T ss_dssp HHHHHHHCCSEEEECCCSTTHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEeeCHHHHHHHHHH
Confidence 6777778899998766555554544444
No 479
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=24.22 E-value=90 Score=31.04 Aligned_cols=36 Identities=17% Similarity=-0.141 Sum_probs=24.9
Q ss_pred HHHhccCCcEEecCCCCCC-hhHHHHHHHcCCCeeee
Q 002431 783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITL 818 (922)
Q Consensus 783 ~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~Pvv~~ 818 (922)
.-..+..+||++|-++-.. -..+..++..|+|||+-
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViG 118 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIG 118 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334568999998765433 33455789999999963
No 480
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=24.06 E-value=1.1e+02 Score=31.97 Aligned_cols=92 Identities=8% Similarity=0.045 Sum_probs=0.0
Q ss_pred ceeeeecCCCCCChhHhhhhHHhhcCCCCCeEEEEEecCCCCChHHHHHHHhccCceEECCCC-----------------
Q 002431 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM----------------- 599 (922)
Q Consensus 537 ~rig~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 599 (922)
+|||++.+ .+.+|.-+..+++.+ +++|++.+.+.+.+-+. ..+.++......+.+.+.
T Consensus 5 ~rI~ILGs---TGSIG~~~l~vi~~~-p~~~~v~al~ag~ni~~-l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v 79 (388)
T 1r0k_A 5 RTVTVLGA---TGSIGHSTLDLIERN-LDRYQVIALTANRNVKD-LADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEA 79 (388)
T ss_dssp EEEEEETT---TSHHHHHHHHHHHHT-GGGEEEEEEEESSCHHH-HHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEE
T ss_pred eEEEEECC---CeEeHHHHHHHHHhC-cCcEEEEEEEcCCCHHH-HHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEE
Q ss_pred --CHHHHHHHHHhCCCeEEEcCCCcCCCCchhhhhcC
Q 002431 600 --SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQ 634 (922)
Q Consensus 600 --~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~ 634 (922)
..+.+.+.+... +||+|...++..|-.+-+.+.+
T Consensus 80 ~~g~~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~ 115 (388)
T 1r0k_A 80 AAGADALVEAAMMG-ADWTMAAIIGCAGLKATLAAIR 115 (388)
T ss_dssp EESHHHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHH
T ss_pred EeCccHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHH
No 481
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.05 E-value=1.3e+02 Score=27.98 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002431 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (922)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (922)
...+.+|..+...++|.+|.+.+..|+...|.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 45566677777777777777777777766554
No 482
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.90 E-value=2.8e+02 Score=22.14 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=57.0
Q ss_pred EEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHH--cCCCeee
Q 002431 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILW--AGLPMIT 817 (922)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~--~g~Pvv~ 817 (922)
+++++.+.+.....+...+...|. +|.... ...+.+..+ ...|++ +|. .|...|..+++.+. ..+|+|.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~---~v~~~~--~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGM---RVFEAE--TLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIV 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCC---EEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEE
Confidence 466777777667778888877665 243322 122322221 235665 555 34444777787775 4688887
Q ss_pred ecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHH
Q 002431 818 LPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAV 854 (922)
Q Consensus 818 ~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~ 854 (922)
+.+..-..... -....|..+ ++.. +.+++...+.
T Consensus 78 ~s~~~~~~~~~--~~~~~g~~~-~l~Kp~~~~~l~~~i~ 113 (121)
T 1zh2_A 78 LSARSEESDKI--AALDAGADD-YLSKPFGIGELQARLR 113 (121)
T ss_dssp EESCCSHHHHH--HHHHHTCSE-EEESSCCHHHHHHHHH
T ss_pred EECCCCHHHHH--HHHhcCCCe-EEeCCcCHHHHHHHHH
Confidence 76654333222 122347777 6653 5555554443
No 483
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=23.75 E-value=2.8e+02 Score=22.18 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=42.5
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCChhH-HHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTT-GTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g~~t-~~eal~~g 812 (922)
.+.+.+.+...++++...+. .+.... ..|+ .+.........+....+..+|+++...|+..... .-.+...|
T Consensus 21 ~~~l~~~g~~~v~~~~r~~~---~~~~~~-~~~~---~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g 93 (118)
T 3ic5_A 21 AALLKTSSNYSVTVADHDLA---ALAVLN-RMGV---ATKQVDAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAG 93 (118)
T ss_dssp HHHHHHCSSEEEEEEESCHH---HHHHHH-TTTC---EEEECCTTCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHhCCCceEEEEeCCHH---HHHHHH-hCCC---cEEEecCCCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhC
Confidence 33444444355555554432 232222 3343 1233333344556666788999998887666333 34566788
Q ss_pred CCeeeec
Q 002431 813 LPMITLP 819 (922)
Q Consensus 813 ~Pvv~~~ 819 (922)
++++-+.
T Consensus 94 ~~~~~~~ 100 (118)
T 3ic5_A 94 AHYFDLT 100 (118)
T ss_dssp CEEECCC
T ss_pred CCEEEec
Confidence 8888433
No 484
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.64 E-value=4e+02 Score=24.12 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceE-EcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHHc--CCCe
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILWA--GLPM 815 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~-f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~~--g~Pv 815 (922)
.+++|+.+.+.....+...+...|. .|+ ... ...+.+..+ ...|++ +|. .|...|...++.+.. ..||
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGY---EIVGEAG--DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC---EEEEEES--SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCC---EEEEEeC--CHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCE
Confidence 4677788777767788888887776 233 222 123333322 235665 555 344458888877653 4588
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcC
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALD 859 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~d 859 (922)
|.+.+..-.... .-....|..+ ++. -+.+++...+.++...
T Consensus 89 i~lt~~~~~~~~--~~~~~~ga~~-~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 89 VVLTAFSQRDLV--ERARDAGAMA-YLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EEEEEGGGHHHH--HTTGGGSCEE-EEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHH--HHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHH
Confidence 877664322211 1122347777 665 3777877776666543
No 485
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.49 E-value=3.2e+02 Score=22.66 Aligned_cols=107 Identities=9% Similarity=-0.026 Sum_probs=61.5
Q ss_pred CeEEEEecCChhhHHHHHHHHHH-cCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHHc-----
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVA-QGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILWA----- 811 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~-~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~~----- 811 (922)
..+++++.+.+.....+...+.+ .|. ..|..... ..+.+..+ ...|++ +|.. +-..|...++.+..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~--~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPY--AKIKIAYN--PFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTT--CEEEEECS--HHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCc--cEEEEECC--HHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 45677888877767888888888 776 22444332 33333332 235666 5653 43447888887764
Q ss_pred CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHH
Q 002431 812 GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVS 855 (922)
Q Consensus 812 g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~ 855 (922)
++|||.+.+..-..... -....|..+ ++.. +.+++.+.+.+
T Consensus 84 ~~~ii~~s~~~~~~~~~--~~~~~g~~~-~l~kP~~~~~l~~~i~~ 126 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVS--RIVALGAET-CFGKPLNFTLLEKTIKQ 126 (143)
T ss_dssp TSEEEEEESSCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHH--HHHhcCCcE-EEeCCCCHHHHHHHHHH
Confidence 68999776654333222 233457777 6653 45555444433
No 486
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.41 E-value=3.4e+02 Score=23.01 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=60.9
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH---cCCCe
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW---AGLPM 815 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~---~g~Pv 815 (922)
.+++|+.+.+.....+...+.+.|. .|.... ...+.+..+ ...|++ +|.. +-..|..+++.+. ..+||
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPY---TLHFAR--DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSC---EEEEES--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred ceEEEECCCHHHHHHHHHHhcccCc---EEEEEC--CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 3567777766656777777777665 244333 233333332 235666 4553 4444777777665 47899
Q ss_pred eeecCCcchhhhHHHHHHhcC-CCCccccC--CHHHHHHHHHHHh
Q 002431 816 ITLPLEKMATRVAGSLCLATG-LGEEMIVN--SMKEYEERAVSLA 857 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g-~~~~~i~~--~~~~~~~~~~~l~ 857 (922)
|.+.+..-..... -....| ..+ ++.. +.+++...+.++.
T Consensus 90 i~~s~~~~~~~~~--~~~~~g~~~~-~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 90 ILLTGDPDLKLIA--KAINEGEIYR-YLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp EEECCCCCHHHHH--HHHHTTCCSE-EECSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHH--HHHhCCCcce-EEeCCCCHHHHHHHHHHHH
Confidence 9887754333222 123346 777 6653 6677766665554
No 487
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=23.35 E-value=4.6e+02 Score=24.49 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=66.1
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecC-CCCCChhHHHHHHHc--CCCee
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDT-PLCNAHTTGTDILWA--GLPMI 816 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~-~~~~g~~t~~eal~~--g~Pvv 816 (922)
.+++|+.+.+.....+...+...|.. |..... ..+.+..+ ...|++ +|- .|...|..+++.+.. ++|||
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~---v~~~~~--~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii 80 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFD---TAVIGD--GTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIV 80 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE---EEEECC--GGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCE---EEEECC--HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEE
Confidence 46778888877678888888887762 444332 23333222 235666 555 344458888877753 79999
Q ss_pred eecCCcchhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc
Q 002431 817 TLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL 858 (922)
Q Consensus 817 ~~~~~~~~~r~~~~~~~~~g~~~~~i~--~~~~~~~~~~~~l~~ 858 (922)
.+.+..-...+. -....|..+ ++. .+.+++.+.+.++..
T Consensus 81 ~lt~~~~~~~~~--~~~~~Ga~~-~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 81 MLTAKTDTVDVV--LGLESGADD-YIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp EEEETTCCSCHH--HHHHTTCCE-EEEESCCHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHH--HHHHCCCCE-EEeCCCCHHHHHHHHHHHHh
Confidence 776553333222 223458888 775 477788777766543
No 488
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.10 E-value=3.2e+02 Score=27.05 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=52.4
Q ss_pred CcccceeeeecCCCCCChhHhhhhHHhhcCC--CCCeEEEEEecCCCCChHHHHHHHhccCceEECCC--CC----HHHH
Q 002431 533 GLRRLRVGYVSSDFGNHPLSHLMGSVFGMHN--KENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS----SDMI 604 (922)
Q Consensus 533 ~~~~~rig~~s~~~~~h~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~ 604 (922)
..++.||+++.|..+ +.+..++.... .-..||.+......+ .....+..+..++.++. -+ +.++
T Consensus 92 ~~~~~ri~vl~Sg~g-----~~l~~ll~~~~~g~l~~~i~~Visn~~~---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~ 163 (292)
T 3lou_A 92 VAARPKVLIMVSKLE-----HCLADLLFRWKMGELKMDIVGIVSNHPD---FAPLAAQHGLPFRHFPITADTKAQQEAQW 163 (292)
T ss_dssp TTSCCEEEEEECSCC-----HHHHHHHHHHHHTSSCCEEEEEEESSST---THHHHHHTTCCEEECCCCSSCHHHHHHHH
T ss_pred cCCCCEEEEEEcCCC-----cCHHHHHHHHHcCCCCcEEEEEEeCcHH---HHHHHHHcCCCEEEeCCCcCCHHHHHHHH
Confidence 345789998876542 34445554332 223687655433222 12335555556655442 12 3568
Q ss_pred HHHHHhCCCeEEEcCCCcCCCCchhhhhc
Q 002431 605 AKLINEDKIQILINLNGYTKGARNEIFAM 633 (922)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~~ 633 (922)
.+.+++.++|++| +.|++.--...++..
T Consensus 164 ~~~l~~~~~Dliv-la~y~~il~~~~l~~ 191 (292)
T 3lou_A 164 LDVFETSGAELVI-LARYMQVLSPEASAR 191 (292)
T ss_dssp HHHHHHHTCSEEE-ESSCCSCCCHHHHHH
T ss_pred HHHHHHhCCCEEE-ecCchhhCCHHHHhh
Confidence 8999999999886 555665444455543
No 489
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=22.88 E-value=3.4e+02 Score=22.74 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=47.7
Q ss_pred CeEEEEecCChhhHHHHHHHHHHc-CCCCCceEEcCCCCcHHHHHhc--c-CCcEE-ecCC-CCCChhHHHHHHH--cCC
Q 002431 742 NSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTDVAMKQEHIRRS--S-LADLF-LDTP-LCNAHTTGTDILW--AGL 813 (922)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~rv~f~~~~~~~~~~~~~--~-~~dv~-l~~~-~~~g~~t~~eal~--~g~ 813 (922)
+-+++++.+.+.....++..+.+. |. ..|.... ...+.+..+ . ..|++ +|.. |-..|..+++.+. ...
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~--~~v~~~~--~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDF--KVVAQAA--NGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTE--EEEEEES--SHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEEC--CHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 345666666665566666666654 33 1121121 123333322 2 45666 4553 4444777777665 246
Q ss_pred CeeeecCCcchhhhHHHHHHhcCCCCccccC
Q 002431 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVN 844 (922)
Q Consensus 814 Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~ 844 (922)
|+|.+.+....+.-...-....|..+ ++..
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~-~l~K 118 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADG-VVAK 118 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSC-CCBC
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCE-EEeC
Confidence 66655542112111112234558888 7764
No 490
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=22.78 E-value=2e+02 Score=29.17 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHc
Q 002431 733 WCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA 811 (922)
Q Consensus 733 ~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~ 811 (922)
..+.+.+.|+..++-+.+. . .++.++.+++.|+. + .+..+.+.. ..+|+++.+.|-.- ...+.+|+..
T Consensus 18 ~~~~l~~~~~~~l~av~d~-~-~~~~~~~~~~~~~~-----~---~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~~al~~ 86 (331)
T 4hkt_A 18 HAKAVSGNADARLVAVADA-F-PAAAEAIAGAYGCE-----V---RTIDAIEAA-ADIDAVVICTPTDTHADLIERFARA 86 (331)
T ss_dssp HHHHHHHCTTEEEEEEECS-S-HHHHHHHHHHTTCE-----E---CCHHHHHHC-TTCCEEEECSCGGGHHHHHHHHHHT
T ss_pred HHHHHhhCCCcEEEEEECC-C-HHHHHHHHHHhCCC-----c---CCHHHHhcC-CCCCEEEEeCCchhHHHHHHHHHHc
Confidence 3444566788888755443 2 45667777777772 2 234555542 36899988877665 6667899999
Q ss_pred CCCeee
Q 002431 812 GLPMIT 817 (922)
Q Consensus 812 g~Pvv~ 817 (922)
|.+|++
T Consensus 87 gk~v~~ 92 (331)
T 4hkt_A 87 GKAIFC 92 (331)
T ss_dssp TCEEEE
T ss_pred CCcEEE
Confidence 999996
No 491
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=22.36 E-value=27 Score=28.89 Aligned_cols=69 Identities=7% Similarity=0.023 Sum_probs=44.3
Q ss_pred HHHHHhccCCcEEecCC--CCCC--hhHH--------HHHHHcCCCeeeecCCcchhhhHHHHHHhcCCCCccccCCHHH
Q 002431 781 QEHIRRSSLADLFLDTP--LCNA--HTTG--------TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKE 848 (922)
Q Consensus 781 ~~~~~~~~~~dv~l~~~--~~~g--~~t~--------~eal~~g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~~~~~ 848 (922)
.+|...|..+-..+-++ +.+| +..+ .||.+-|.||. + ++-+|+.+
T Consensus 30 ~dY~~ay~~i~~Yl~~~~~~~~g~~~~~il~~lldLfEeaaa~G~~v~----------------------e-V~G~D~~~ 86 (113)
T 2hh6_A 30 KEYHHAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAEGKKVT----------------------D-LTGEDVAA 86 (113)
T ss_dssp HHHHHHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHHHHHHHHTTCCHH----------------------H-HHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHHHHHHcCCchH----------------------H-HhCCCHHH
Confidence 56666666666666655 3444 2222 37889999988 2 55569999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002431 849 YEERAVSLALDRQKLQALTNKLKSVR 874 (922)
Q Consensus 849 ~~~~~~~l~~d~~~~~~~~~~~~~~~ 874 (922)
|++..+. +...++...|++|.+.+
T Consensus 87 Fcdeli~--~~k~~~dk~r~~Ln~~i 110 (113)
T 2hh6_A 87 FCDELMK--DTKTWMDKYRTKLNDSI 110 (113)
T ss_dssp HHHHHHT--TSCBHHHHHHHHHHHHH
T ss_pred HHHHHHH--hcchHHHHHHHHHHHHh
Confidence 9887776 25556667777776543
No 492
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.17 E-value=3.3e+02 Score=22.44 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=62.3
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEE-cCCCCcHHHHHhc--cCCcEE-ecCC-C-CCChhHHHHHHH--cC
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRS--SLADLF-LDTP-L-CNAHTTGTDILW--AG 812 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f-~~~~~~~~~~~~~--~~~dv~-l~~~-~-~~g~~t~~eal~--~g 812 (922)
+..+++++.+.+.....+...+.+.|.. |+. ... ..+.+..+ ...|++ +|.. + ...|...++.+. .+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~---v~~~~~~--~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYD---VLGVFDN--GEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCN 82 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCE---EEEEESS--HHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCe---eEEEECC--HHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCC
Confidence 4457788887777678888888888872 442 221 33333322 235666 5553 3 234777776665 58
Q ss_pred CCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 813 ~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
+|||.+.+..-....- -....|..+ ++.. +.+++...+.++
T Consensus 83 ~~ii~ls~~~~~~~~~--~~~~~g~~~-~l~kp~~~~~l~~~i~~~ 125 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQ--RAKRVNPFG-YLAKPVAADTLHRSIEMA 125 (140)
T ss_dssp CCEEEEECCCCHHHHH--HHHTTCCSE-EEEESCCHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHH--HHHhcCCCE-EEeCCCCHHHHHHHHHHH
Confidence 9999877654332222 223457777 6653 556655544443
No 493
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.14 E-value=1e+02 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002431 38 LLGAIYYQLHDYDMCIARNEEALRLEPR 65 (922)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 65 (922)
.+|..+...|+++.|+..|-+++...|+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666665554
No 494
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=22.08 E-value=1.4e+02 Score=31.73 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=49.5
Q ss_pred HHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcCC
Q 002431 735 NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL 813 (922)
Q Consensus 735 ~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g~ 813 (922)
+.+.+.|+..++-+.+.. .++.++.+++.|+....+... .+..+.+.. ..+|+++.+.|..- ...+.+|+..|+
T Consensus 101 ~~l~~~~~~~lvav~d~~--~~~~~~~a~~~g~~~~~~~~~--~~~~~ll~~-~~vD~V~iatp~~~h~~~~~~al~aGk 175 (433)
T 1h6d_A 101 PGFAGCQHSRIEALVSGN--AEKAKIVAAEYGVDPRKIYDY--SNFDKIAKD-PKIDAVYIILPNSLHAEFAIRAFKAGK 175 (433)
T ss_dssp HHTTTCSSEEEEEEECSC--HHHHHHHHHHTTCCGGGEECS--SSGGGGGGC-TTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred HHHhhCCCcEEEEEEcCC--HHHHHHHHHHhCCCccccccc--CCHHHHhcC-CCCCEEEEcCCchhHHHHHHHHHHCCC
Confidence 344567888876555432 455667777888842223222 223443321 26899988887666 666779999999
Q ss_pred Ceee
Q 002431 814 PMIT 817 (922)
Q Consensus 814 Pvv~ 817 (922)
+|++
T Consensus 176 ~Vl~ 179 (433)
T 1h6d_A 176 HVMC 179 (433)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9996
No 495
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=22.04 E-value=5.3e+02 Score=24.68 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=64.6
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhcc---CCcEE-ecC-CCCCChhHHHHHHHc----
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS---LADLF-LDT-PLCNAHTTGTDILWA---- 811 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~---~~dv~-l~~-~~~~g~~t~~eal~~---- 811 (922)
...+++++.+.+..+..+...+...|. .|.... +..+-+..+. ..|++ +|- .|-..|..+++.+..
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~---~v~~a~--~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~ 197 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLL---QVHEAS--HAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSK 197 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTC---EEEEES--SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCc---EEEEeC--CHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCC
Confidence 456788888887767777777777665 243332 2344444432 25665 565 455558888877753
Q ss_pred -CCCeeeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 812 -GLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 812 -g~Pvv~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
.+|||++.+........ -....|..+ ++.. +.+++...+.++
T Consensus 198 ~~~~ii~~s~~~~~~~~~--~a~~~Ga~~-yl~KP~~~~~L~~~i~~~ 242 (259)
T 3luf_A 198 QQLAIIGISVSDKRGLSA--RYLKQGAND-FLNQPFEPEELQCRVSHN 242 (259)
T ss_dssp TTSEEEEEECSSSSSHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCHHHHH--HHHhcChhh-eEcCCCCHHHHHHHHHHH
Confidence 58888766653332221 223458887 7764 666666555444
No 496
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=22.02 E-value=75 Score=27.85 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhC--CCeEEEEecCChh----------h---HHHHHHHHHHcCCCCCceEEcCC
Q 002431 728 EIFNTWCNILRRV--PNSALWLLRFPAA----------G---EMRLRAYAVAQGVQPDQIIFTDV 777 (922)
Q Consensus 728 ~~~~~~~~il~~~--p~~~l~~~~~~~~----------~---~~~l~~~~~~~g~~~~rv~f~~~ 777 (922)
..|+.++.+++.. |+.++.|.|.... + .+.+...+.+.||+.+||...|+
T Consensus 39 ~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 103 (148)
T 4erh_A 39 QALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGM 103 (148)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4456666677777 7889999884311 0 14667777888999999988773
No 497
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.00 E-value=3.3e+02 Score=22.33 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=63.5
Q ss_pred eEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhc--cCCcEE-ecCC-CCCChhHHHHHHH---cCCCe
Q 002431 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS--SLADLF-LDTP-LCNAHTTGTDILW---AGLPM 815 (922)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~--~~~dv~-l~~~-~~~g~~t~~eal~---~g~Pv 815 (922)
.+++++.+.+.....++..+...|. .|..... ..+.+..+ ...|++ +|.. |-..|..+++.+. .++||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~---~v~~~~~--~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGY---EVEIAAT--AGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKK 78 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC---EEEEESS--HHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCc---eEEEeCC--HHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcE
Confidence 4677788877767888888887776 3443332 33433332 345766 5553 4444777777764 47899
Q ss_pred eeecCCcchhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHH
Q 002431 816 ITLPLEKMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSL 856 (922)
Q Consensus 816 v~~~~~~~~~r~~~~~~~~~g~~~~~i~~--~~~~~~~~~~~l 856 (922)
|.+.+..-..... -....|..+ ++.. +.+++.+.+.++
T Consensus 79 i~~s~~~~~~~~~--~~~~~ga~~-~l~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 79 IMVTGYASLENSV--FSLNAGADA-YIMKPVNPRDLLEKIKEK 118 (132)
T ss_dssp EEEESCCCHHHHH--HHHHTTCSE-EEESSCCHHHHHHHHHHH
T ss_pred EEEeccccHHHHH--HHHhccchh-hccCCCCHHHHHHHHHHH
Confidence 9877654332222 223458888 7754 667776665554
No 498
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} SCOP: c.23.17.1
Probab=21.94 E-value=4.1e+02 Score=24.84 Aligned_cols=71 Identities=15% Similarity=0.006 Sum_probs=43.7
Q ss_pred CCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcC--CCCcHHHHHhccCCcEEecCCCCCChhHHHHHHHcCCCeeee
Q 002431 741 PNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD--VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL 818 (922)
Q Consensus 741 p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~--~~~~~~~~~~~~~~dv~l~~~~~~g~~t~~eal~~g~Pvv~~ 818 (922)
|++ ++.+|..|..--+|.++.+ .++.+.=|+=.| ++.-.+--..+. ..|+|.||.
T Consensus 127 ~~a-I~aIGNAPTAL~~Lleli~-g~~~PalVIG~PVGFVgaaESKe~L~---------------------~~~vP~I~~ 183 (218)
T 1v9c_A 127 DGA-IVGVGNAPTFLLALVEAIR-QGARPALVLGMPVGFVNVLEAKRALM---------------------EAPVPWIVT 183 (218)
T ss_dssp SSC-EEEESSCTTTTHHHHHHHH-TTCCCSEEEECCCSSSSHHHHHHHHT---------------------TSSSCEEEE
T ss_pred CCc-EEEEeCcHHHHHHHHHHHc-CCCCCcEEEEeCCCccCHHHHHHHHH---------------------hCCCCEEEE
Confidence 775 4556877776778888887 666554444332 444333332221 247899999
Q ss_pred cCCcchhhhHHHHHHh
Q 002431 819 PLEKMATRVAGSLCLA 834 (922)
Q Consensus 819 ~~~~~~~r~~~~~~~~ 834 (922)
.|..--|-+.++++++
T Consensus 184 ~GrkGGS~vAaAivNA 199 (218)
T 1v9c_A 184 EGRKGGSTLVVAALHA 199 (218)
T ss_dssp CTTCCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH
Confidence 8876667666666544
No 499
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.77 E-value=3.2e+02 Score=22.03 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHH
Q 002431 39 LGAIYYQLHDYDMCIAR 55 (922)
Q Consensus 39 la~~~~~~g~~~~A~~~ 55 (922)
....+.++|+|++|..+
T Consensus 45 R~sSLmNrG~Yq~Al~l 61 (115)
T 2uwj_G 45 RISSLANQGRYQEALAF 61 (115)
T ss_dssp HHHHHHHTTCHHHHHGG
T ss_pred HHHHHHcchhHHHHHHh
Confidence 33444445555544443
No 500
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=21.73 E-value=1.6e+02 Score=29.98 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=46.8
Q ss_pred HHHHhhCCCeEEEEecCChhhHHHHHHHHHHcCCCCCceEEcCCCCcHHHHHhccCCcEEecCCCCCC-hhHHHHHHHcC
Q 002431 734 CNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAG 812 (922)
Q Consensus 734 ~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~rv~f~~~~~~~~~~~~~~~~dv~l~~~~~~g-~~t~~eal~~g 812 (922)
.+.+.+.|+..++-+.+.. .++.++.+++.|+. .+ .+..+.+.- ..+|+++.+.|..- ...+.+|+..|
T Consensus 20 ~~~l~~~~~~~l~av~d~~--~~~~~~~a~~~g~~----~~---~~~~~~l~~-~~~D~V~i~tp~~~h~~~~~~al~~g 89 (344)
T 3euw_A 20 AANIAANPDLELVVIADPF--IEGAQRLAEANGAE----AV---ASPDEVFAR-DDIDGIVIGSPTSTHVDLITRAVERG 89 (344)
T ss_dssp HHHHHHCTTEEEEEEECSS--HHHHHHHHHTTTCE----EE---SSHHHHTTC-SCCCEEEECSCGGGHHHHHHHHHHTT
T ss_pred HHHHHhCCCcEEEEEECCC--HHHHHHHHHHcCCc----ee---CCHHHHhcC-CCCCEEEEeCCchhhHHHHHHHHHcC
Confidence 3445667888877554432 45566666666631 11 223333321 27899988877666 66678999999
Q ss_pred CCeee
Q 002431 813 LPMIT 817 (922)
Q Consensus 813 ~Pvv~ 817 (922)
++|++
T Consensus 90 k~v~~ 94 (344)
T 3euw_A 90 IPALC 94 (344)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 99996
Done!