Query 002432
Match_columns 922
No_of_seqs 458 out of 4097
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 23:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-56 8.2E-61 517.7 23.3 328 1-333 306-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.9E-49 8.6E-54 487.2 38.6 551 1-721 340-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 7.1E-37 1.5E-41 380.2 29.8 531 207-895 69-607 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.9E-36 6.3E-41 374.8 27.6 517 229-901 69-590 (968)
5 KOG0618 Serine/threonine phosp 99.9 4.5E-28 9.8E-33 266.1 -3.8 501 212-919 3-508 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 3.3E-29 7.1E-34 249.4 -16.6 176 208-403 46-223 (565)
7 KOG4194 Membrane glycoprotein 99.9 1E-25 2.3E-30 234.7 5.4 205 652-891 244-448 (873)
8 KOG4194 Membrane glycoprotein 99.9 1E-24 2.2E-29 227.3 7.2 153 677-869 316-477 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.4E-27 3.1E-32 237.8 -16.4 455 227-894 43-540 (565)
10 KOG0618 Serine/threonine phosp 99.9 5.7E-26 1.2E-30 249.7 -6.2 112 801-922 376-487 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 6.8E-25 1.5E-29 229.8 -4.1 113 247-362 24-139 (1255)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.5E-26 242.1 24.4 345 205-634 556-911 (1153)
13 KOG0444 Cytoskeletal regulator 99.9 3.5E-24 7.6E-29 224.5 -6.3 177 205-400 5-187 (1255)
14 PF00931 NB-ARC: NB-ARC domain 99.8 2.9E-19 6.2E-24 189.8 5.3 134 4-139 149-286 (287)
15 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.5E-23 154.1 -6.3 163 222-404 26-191 (264)
16 KOG0617 Ras suppressor protein 99.6 2.3E-18 5E-23 152.3 -5.5 158 199-362 25-186 (264)
17 KOG4237 Extracellular matrix p 99.6 1.4E-17 3.1E-22 166.9 -5.8 135 246-397 60-199 (498)
18 KOG4237 Extracellular matrix p 99.5 1.8E-15 3.9E-20 152.0 0.2 142 190-335 51-199 (498)
19 PRK15387 E3 ubiquitin-protein 99.5 8.2E-14 1.8E-18 160.3 11.9 253 527-893 204-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 5.4E-13 1.2E-17 154.8 12.6 138 208-362 179-317 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 6.3E-12 1.4E-16 144.9 18.8 156 209-403 203-359 (788)
22 PRK15370 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 150.4 14.0 179 192-404 185-364 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.3 7.7E-13 1.7E-17 156.0 6.7 174 206-399 544-730 (889)
24 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 4.9E-17 136.0 -3.3 179 207-407 75-255 (722)
25 KOG4341 F-box protein containi 99.1 1.1E-12 2.4E-17 133.5 -5.5 168 676-869 266-436 (483)
26 KOG4341 F-box protein containi 99.1 4.5E-13 9.8E-18 136.2 -10.0 233 652-916 215-457 (483)
27 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.5E-15 109.8 3.0 130 253-394 16-148 (175)
28 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 128.5 -4.5 183 211-415 54-241 (722)
29 PF14580 LRR_9: Leucine-rich r 98.9 9.6E-10 2.1E-14 103.7 5.9 119 208-331 20-147 (175)
30 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.7E-15 112.2 -0.3 185 204-404 211-417 (490)
31 COG4886 Leucine-rich repeat (L 98.8 3.5E-09 7.5E-14 118.0 6.4 174 207-401 116-292 (394)
32 COG4886 Leucine-rich repeat (L 98.8 5E-09 1.1E-13 116.7 5.6 184 211-414 97-283 (394)
33 cd00116 LRR_RI Leucine-rich re 98.8 3E-09 6.5E-14 115.1 3.3 182 207-399 81-291 (319)
34 cd00116 LRR_RI Leucine-rich re 98.8 6.9E-09 1.5E-13 112.3 6.1 131 227-362 79-234 (319)
35 KOG1259 Nischarin, modulator o 98.8 9.3E-10 2E-14 107.1 -0.8 129 228-363 283-413 (490)
36 KOG3207 Beta-tubulin folding c 98.5 3E-08 6.5E-13 102.3 0.4 189 206-403 120-318 (505)
37 PRK15386 type III secretion pr 98.5 3.9E-07 8.5E-12 96.6 8.3 162 677-895 51-213 (426)
38 KOG3207 Beta-tubulin folding c 98.4 6.8E-08 1.5E-12 99.7 1.9 179 204-398 143-338 (505)
39 PLN03150 hypothetical protein; 98.4 6E-07 1.3E-11 104.7 9.8 105 257-362 419-528 (623)
40 PRK15386 type III secretion pr 98.4 6.9E-07 1.5E-11 94.7 7.9 138 700-893 48-188 (426)
41 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.8E-12 71.7 3.0 56 257-312 2-60 (61)
42 PLN03150 hypothetical protein; 98.4 8.2E-07 1.8E-11 103.5 8.7 105 280-398 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 6.9E-12 70.8 3.3 60 808-870 1-60 (61)
44 KOG0531 Protein phosphatase 1, 98.1 2.4E-07 5.2E-12 103.2 -2.0 152 227-401 93-247 (414)
45 KOG2120 SCF ubiquitin ligase, 98.1 4.3E-08 9.3E-13 95.9 -7.5 64 299-362 208-273 (419)
46 PF12799 LRR_4: Leucine Rich r 98.1 5E-06 1.1E-10 58.4 4.1 37 257-293 2-38 (44)
47 KOG1859 Leucine-rich repeat pr 98.0 1.3E-07 2.8E-12 103.3 -7.0 176 206-399 108-292 (1096)
48 KOG1859 Leucine-rich repeat pr 98.0 8.2E-08 1.8E-12 104.9 -9.1 129 227-362 162-292 (1096)
49 KOG1909 Ran GTPase-activating 98.0 1.8E-06 3.9E-11 87.1 0.3 182 208-399 93-311 (382)
50 KOG0531 Protein phosphatase 1, 98.0 1.4E-06 3.1E-11 97.1 -0.7 172 204-399 92-268 (414)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 56.3 4.3 38 302-340 2-39 (44)
52 KOG3665 ZYG-1-like serine/thre 97.9 4.3E-06 9.4E-11 96.9 1.2 125 207-334 122-260 (699)
53 KOG4579 Leucine-rich repeat (L 97.7 2.4E-06 5.3E-11 74.0 -2.5 90 253-343 50-141 (177)
54 KOG2120 SCF ubiquitin ligase, 97.7 2.8E-06 6.1E-11 83.5 -3.3 61 653-714 286-348 (419)
55 KOG3665 ZYG-1-like serine/thre 97.7 2.9E-05 6.3E-10 90.2 4.2 132 229-362 122-263 (699)
56 KOG4579 Leucine-rich repeat (L 97.7 3.8E-06 8.2E-11 72.9 -2.5 108 209-319 29-141 (177)
57 KOG1947 Leucine rich repeat pr 97.6 2.6E-06 5.5E-11 98.2 -5.8 66 652-717 242-308 (482)
58 KOG1644 U2-associated snRNP A' 97.6 9.1E-05 2E-09 69.2 5.3 124 259-396 22-150 (233)
59 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.3E-09 66.4 5.6 100 230-334 43-150 (233)
60 KOG1947 Leucine rich repeat pr 97.4 9.9E-06 2.2E-10 93.3 -5.0 122 468-591 187-309 (482)
61 KOG1909 Ran GTPase-activating 97.3 0.00011 2.4E-09 74.5 2.6 129 207-335 157-309 (382)
62 KOG2982 Uncharacterized conser 97.3 5.5E-05 1.2E-09 74.7 -0.1 60 254-313 69-133 (418)
63 KOG2982 Uncharacterized conser 96.8 0.00054 1.2E-08 67.9 1.3 40 345-397 220-260 (418)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.5E-08 63.2 1.9 82 253-334 62-153 (260)
65 KOG2123 Uncharacterized conser 96.2 0.00018 3.9E-09 70.4 -5.7 80 280-361 20-100 (388)
66 KOG2739 Leucine-rich acidic nu 96.1 0.0022 4.8E-08 63.0 1.4 101 253-355 40-149 (260)
67 KOG2123 Uncharacterized conser 95.7 0.00082 1.8E-08 66.0 -3.7 78 228-311 18-98 (388)
68 PF13306 LRR_5: Leucine rich r 95.7 0.028 6.1E-07 51.0 6.5 100 246-351 25-128 (129)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.6E-08 36.0 0.7 21 302-322 1-21 (22)
70 COG5238 RNA1 Ran GTPase-activa 95.6 0.01 2.2E-07 58.3 3.5 87 254-341 28-136 (388)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 35.6 0.9 21 257-277 1-21 (22)
72 PF13306 LRR_5: Leucine rich r 95.3 0.036 7.8E-07 50.3 6.1 107 246-358 2-112 (129)
73 PF13504 LRR_7: Leucine rich r 93.4 0.047 1E-06 29.3 1.3 16 302-317 2-17 (17)
74 KOG3864 Uncharacterized conser 93.1 0.021 4.4E-07 54.0 -0.7 40 677-717 150-189 (221)
75 KOG3864 Uncharacterized conser 93.1 0.016 3.4E-07 54.8 -1.6 70 520-591 121-190 (221)
76 PF13504 LRR_7: Leucine rich r 92.7 0.073 1.6E-06 28.6 1.3 16 257-272 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 92.0 0.004 8.7E-08 59.6 -6.9 82 253-334 39-121 (326)
78 PRK04841 transcriptional regul 90.9 2.2 4.8E-05 53.5 13.5 150 6-183 176-332 (903)
79 KOG0473 Leucine-rich repeat pr 90.8 0.0085 1.8E-07 57.5 -6.1 84 227-314 40-124 (326)
80 smart00369 LRR_TYP Leucine-ric 89.1 0.32 7E-06 29.5 2.0 19 301-319 2-20 (26)
81 smart00370 LRR Leucine-rich re 89.1 0.32 7E-06 29.5 2.0 19 301-319 2-20 (26)
82 COG5238 RNA1 Ran GTPase-activa 88.5 1.1 2.4E-05 44.6 6.2 133 227-362 90-255 (388)
83 smart00370 LRR Leucine-rich re 85.8 0.67 1.4E-05 28.1 2.0 20 255-274 1-20 (26)
84 smart00369 LRR_TYP Leucine-ric 85.8 0.67 1.4E-05 28.1 2.0 20 255-274 1-20 (26)
85 smart00367 LRR_CC Leucine-rich 78.6 1.1 2.4E-05 27.2 1.0 18 761-778 1-18 (26)
86 TIGR03015 pepcterm_ATPase puta 75.0 13 0.00027 38.7 8.5 54 5-59 185-242 (269)
87 smart00364 LRR_BAC Leucine-ric 68.3 3 6.4E-05 25.2 1.1 17 836-852 3-19 (26)
88 PRK00080 ruvB Holliday junctio 65.1 1.5E+02 0.0033 31.8 14.3 100 5-117 173-273 (328)
89 smart00365 LRR_SD22 Leucine-ri 64.1 5.2 0.00011 24.3 1.6 17 300-316 1-17 (26)
90 TIGR00635 ruvB Holliday juncti 62.6 43 0.00092 35.5 9.5 52 5-57 152-203 (305)
91 PF13516 LRR_6: Leucine Rich r 53.4 6.4 0.00014 23.1 0.7 14 301-314 2-15 (24)
92 PF14516 AAA_35: AAA-like doma 50.7 50 0.0011 35.5 7.5 55 3-62 192-246 (331)
93 KOG4308 LRR-containing protein 43.4 0.58 1.3E-05 52.6 -8.9 132 257-399 145-303 (478)
94 smart00368 LRR_RI Leucine rich 40.7 20 0.00043 22.1 1.5 13 257-269 3-15 (28)
95 COG3899 Predicted ATPase [Gene 34.6 4.4E+02 0.0096 32.6 12.9 108 5-121 212-326 (849)
96 KOG3763 mRNA export factor TAP 32.6 18 0.0004 40.3 0.7 72 805-877 215-288 (585)
97 PF05725 FNIP: FNIP Repeat; I 25.6 80 0.0017 22.0 2.7 9 808-816 12-20 (44)
98 KOG4308 LRR-containing protein 23.7 4.2 9.1E-05 45.8 -6.2 131 230-362 145-303 (478)
99 PRK00411 cdc6 cell division co 20.6 5.9E+02 0.013 28.0 10.0 138 5-162 200-357 (394)
100 COG2909 MalT ATP-dependent tra 20.3 2.7E+02 0.0058 33.5 7.0 144 12-184 194-339 (894)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-56 Score=517.70 Aligned_cols=328 Identities=30% Similarity=0.470 Sum_probs=269.3
Q ss_pred CCCcceEeCCCCCHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCC
Q 002432 1 MGSEANFSIEILNEEEAWRLFEVKLGND--DLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMP 78 (922)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~ 78 (922)
||+...+++++|+++|||+||+++|++. ...++++++|++||++|+|+|||+++||+.|+.|+++++|+++.+.+...
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 7888999999999999999999999543 33455999999999999999999999999999999999999999988632
Q ss_pred CCCCCccc-hHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCccccc-HHHHHHHHHHHHHHH
Q 002432 79 TENNFHRE-LGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGID-MEDARNKLYTLVHEL 154 (922)
Q Consensus 79 ~~~~~~~~-~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~-~e~~~~~~~~~i~~L 154 (922)
.... .++ .+.|+++|++|||.||++ +|.||+|||+| +||+|.+ +||.+||||||+++.. .+.|++.+++||.+|
T Consensus 386 ~~~~-~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 386 LAAD-FSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccCC-CCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 1111 122 344999999999999966 99999999999 8999999 9999999999999855 788999999999999
Q ss_pred Hhhcceeccc---ccceEEecHHHHHHHHHHHc-----ccCeEEEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC
Q 002432 155 KDSCLLLEGY---SCREFSMHDVVHDVAILIAC-----GEQKEFLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL 226 (922)
Q Consensus 155 ~~~~l~~~~~---~~~~~~mhdli~dl~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 226 (922)
|.+++++... ....|+|||+|||||.+++. +|..++. .+.+..+.+.......+|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998764 44789999999999999999 6664332 2235555666666789999999999999999888
Q ss_pred CCCCccEEEccCCCC-cCCCCCChHHhhCCCCCcEEEeeCC-cCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcC
Q 002432 227 ECPQLELLLLSSEHS-SVDVNIPQRFFTGMRELKVVDLTNM-QLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNL 303 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~-~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L 303 (922)
.+++|++|.+.+|.. .. .++..+|..++.||||||++| .+.++|++|++|.|||||+++++.+.. |.++++|+.|
T Consensus 543 ~~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 888999999999863 22 788888999999999999976 456889888888888888888877777 7777777777
Q ss_pred CEEEeecCC-CcccchhhcCCCCCCEEeccC
Q 002432 304 EILSLIESD-IVEFPEELGKLTKLRLLDLTN 333 (922)
Q Consensus 304 ~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~ 333 (922)
++||+..+. +..+|..+..|.+||+|.+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeec
Confidence 777776663 334444445566666666654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.9e-49 Score=487.16 Aligned_cols=551 Identities=20% Similarity=0.257 Sum_probs=365.1
Q ss_pred CCCcceEeCCCCCHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCC
Q 002432 1 MGSEANFSIEILNEEEAWRLFEVKL-GNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPT 79 (922)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~~-~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~ 79 (922)
+|++++|+++.|+++|||+||+++| ++..+++++++++++||++|+|+||||+++|+.|+++ +.++|+++++++.
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~--- 415 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLR--- 415 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH---
Confidence 3678899999999999999999999 5555677899999999999999999999999999998 7899999999986
Q ss_pred CCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhc
Q 002432 80 ENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSC 158 (922)
Q Consensus 80 ~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~ 158 (922)
... ..+|+++|++||++|+++..|.||+|+|+| +++.+ +.|..|+|.+..... ..++.|+++|
T Consensus 416 -~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~--~~v~~~l~~~~~~~~----------~~l~~L~~ks 479 (1153)
T PLN03210 416 -NGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV--NDIKLLLANSDLDVN----------IGLKNLVDKS 479 (1153)
T ss_pred -hCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH--HHHHHHHHhcCCCch----------hChHHHHhcC
Confidence 111 134999999999999874369999999999 66544 557788887655421 1288999999
Q ss_pred ceecccccceEEecHHHHHHHHHHHcccCeEEEecCCCCC------CC-CCccccCcceEEEeecCCCCCC--CC--CCC
Q 002432 159 LLLEGYSCREFSMHDVVHDVAILIACGEQKEFLVRNGDVW------EW-PDEDALKKCYAISWIDSSGGEL--PE--GLE 227 (922)
Q Consensus 159 l~~~~~~~~~~~mhdli~dl~~~~~~~e~~~~~~~~~~~~------~~-~~~~~~~~l~~L~l~~~~~~~l--~~--~~~ 227 (922)
|++.. .+.++|||++|+||+.+++++.. .+.....+. .+ .......+++.+++..+.+..+ .. +.+
T Consensus 480 Li~~~--~~~~~MHdLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 480 LIHVR--EDIVEMHSLLQEMGKEIVRAQSN-EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred CEEEc--CCeEEhhhHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 99876 35799999999999999876641 001100110 00 0111234567777665554322 11 126
Q ss_pred CCCccEEEccCCCCc----CCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCc
Q 002432 228 CPQLELLLLSSEHSS----VDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKN 302 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~----~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~ 302 (922)
+++|+.|.+..+... ....+|..+..-..+||+|++.++.+..+|..+ ...+|++|++.+|.+.. +..+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 667777766544210 111345554222345777777777777777666 45677777777777666 666667777
Q ss_pred CCEEEeecC-CCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432 303 LEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE 381 (922)
Q Consensus 303 L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (922)
|++|+++++ .++.+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.... ..+..
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~-------------~Lp~~ 700 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE-------------ILPTG 700 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC-------------ccCCc
Confidence 777777665 355565 3666777777777777666666665 6777777777777664332 12222
Q ss_pred CCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccch
Q 002432 382 LMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI 460 (922)
Q Consensus 382 l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 460 (922)
+ ++++|+.|+++++.. ..+|.
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~--------------------------------------------------------- 722 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPD--------------------------------------------------------- 722 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcccccc---------------------------------------------------------
Confidence 2 456666666655431 11110
Q ss_pred hhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccc
Q 002432 461 CLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRI 540 (922)
Q Consensus 461 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 540 (922)
..++|+.|++.++. +..++..+ .+++|++|.+.++..... |..... +
T Consensus 723 ------~~~nL~~L~L~~n~-i~~lP~~~---~l~~L~~L~l~~~~~~~l------~~~~~~-----------------l 769 (1153)
T PLN03210 723 ------ISTNISWLDLDETA-IEEFPSNL---RLENLDELILCEMKSEKL------WERVQP-----------------L 769 (1153)
T ss_pred ------ccCCcCeeecCCCc-cccccccc---cccccccccccccchhhc------cccccc-----------------c
Confidence 01233444443322 11122111 345555555554322110 000000 0
Q ss_pred cccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccE
Q 002432 541 CVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRY 620 (922)
Q Consensus 541 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 620 (922)
. ......+++|+.|.+.+|+.+..+|. .+.++++|+.|++++|..++.+|... .+++|+.
T Consensus 770 ~--~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~----------------~L~sL~~ 829 (1153)
T PLN03210 770 T--PLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI----------------NLESLES 829 (1153)
T ss_pred c--hhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC----------------CccccCE
Confidence 0 00112346788888888887777643 46788889999999888887776432 5788999
Q ss_pred EecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHH
Q 002432 621 LSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMI 700 (922)
Q Consensus 621 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 700 (922)
|++++|..+..++. ..++|+.|++++|.++.++... ..+++|+.|++++|++++.++.. .
T Consensus 830 L~Ls~c~~L~~~p~----------------~~~nL~~L~Ls~n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~--~ 889 (1153)
T PLN03210 830 LDLSGCSRLRTFPD----------------ISTNISDLNLSRTGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLN--I 889 (1153)
T ss_pred EECCCCCccccccc----------------cccccCEeECCCCCCccChHHH--hcCCCCCEEECCCCCCcCccCcc--c
Confidence 99999988877542 2468999999999888775432 45899999999999999998653 6
Q ss_pred hhhccccEEEEecccccceEe
Q 002432 701 KSLEQLQHLEIRNCTGLQVII 721 (922)
Q Consensus 701 ~~l~~L~~L~l~~c~~l~~l~ 721 (922)
..+++|+.+++++|++++.+.
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccCCCeeecCCCccccccc
Confidence 788999999999999998764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.1e-37 Score=380.24 Aligned_cols=531 Identities=18% Similarity=0.170 Sum_probs=358.3
Q ss_pred CcceEEEeecCCCCC-CCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCCCCE
Q 002432 207 KKCYAISWIDSSGGE-LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVNLQT 283 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 283 (922)
.+++.|++.++.+.. ++..+ .+++|++|++++|... +.+|.++|..+++||+|++++|.+. .+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 478999999998744 44433 8999999999999765 3799999889999999999999987 4564 56899999
Q ss_pred EEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCc
Q 002432 284 LCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360 (922)
Q Consensus 284 L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~ 360 (922)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 9999999875 788999999999999999876 78999999999999999999755567776 9999999999999998
Q ss_pred ccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432 361 VEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH 439 (922)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 439 (922)
+.+ ..+..++++++|++|++++|... .+|..+
T Consensus 224 l~~-------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---------------------------------- 256 (968)
T PLN00113 224 LSG-------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL---------------------------------- 256 (968)
T ss_pred cCC-------------cCChhHhcCCCCCEEECcCceeccccChhH----------------------------------
Confidence 875 56678899999999999988743 344332
Q ss_pred ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCccccc
Q 002432 440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVD 519 (922)
Q Consensus 440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 519 (922)
..+++|+.|++.++......+..+ ..+++|++|++++|.....++ ..
T Consensus 257 --------------------------~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p-----~~ 303 (968)
T PLN00113 257 --------------------------GNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIP-----EL 303 (968)
T ss_pred --------------------------hCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCC-----hh
Confidence 111233333333332211122211 244555555555553211111 01
Q ss_pred CcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCC
Q 002432 520 CDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGE 599 (922)
Q Consensus 520 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 599 (922)
...+++|+.|++.++......+. ....+++|+.|++.+|. +....+ ..+..+++|+.|++++|.-...++..
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~--- 375 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPV---ALTSLPRLQVLQLWSNK-FSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEG--- 375 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCCh---hHhcCCCCCEEECcCCC-CcCcCC-hHHhCCCCCcEEECCCCeeEeeCChh---
Confidence 23345555555555433222221 13456677777777663 322212 23455677777777765432222211
Q ss_pred CCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccC
Q 002432 600 EPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQR 679 (922)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 679 (922)
...+++|+.|.+.++.-...+ +..+..+++|+.|++++|.++...+.. ...+++
T Consensus 376 ------------~~~~~~L~~L~l~~n~l~~~~-------------p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~ 429 (968)
T PLN00113 376 ------------LCSSGNLFKLILFSNSLEGEI-------------PKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPL 429 (968)
T ss_pred ------------HhCcCCCCEEECcCCEecccC-------------CHHHhCCCCCCEEECcCCEeeeECChh-HhcCCC
Confidence 123456666666665432221 122345778888888888776543332 235788
Q ss_pred ccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcC
Q 002432 680 LTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTS 759 (922)
Q Consensus 680 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 759 (922)
|+.|++++|. +....+ ..+..+++|+.|++++|.....++. ....++|+.|++++|.....++..+.
T Consensus 430 L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~---------~~~~~~L~~L~ls~n~l~~~~~~~~~-- 496 (968)
T PLN00113 430 VYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPD---------SFGSKRLENLDLSRNQFSGAVPRKLG-- 496 (968)
T ss_pred CCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCc---------ccccccceEEECcCCccCCccChhhh--
Confidence 8888888854 444333 3356788888888888754433321 11246788888888866656665544
Q ss_pred CCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccE
Q 002432 760 EWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKD 839 (922)
Q Consensus 760 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~ 839 (922)
.+++|+.|++++|.-...+|.. +..+++|++|+|++|.+....|..+. .+++|+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~----------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~ 551 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDE----------------------LSSCKKLVSLDLSHNQLSGQIPASFS---EMPVLSQ 551 (968)
T ss_pred hhhccCEEECcCCcceeeCChH----------------------HcCccCCCEEECCCCcccccCChhHh---CcccCCE
Confidence 7888999999887544455543 25688899999999988877776654 6788999
Q ss_pred EEeecCCCc-ccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccc
Q 002432 840 LEVRDDDSA-SVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDL 895 (922)
Q Consensus 840 L~l~~~~l~-~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L 895 (922)
|++++|.+. .+|..+ .++++|+.|++++|++....|..+.+.++....+.+++.+
T Consensus 552 L~Ls~N~l~~~~p~~l-~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 552 LDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred EECCCCcccccCChhH-hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 999997775 567655 6789999999999988877776666566665666666544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-36 Score=374.79 Aligned_cols=517 Identities=18% Similarity=0.129 Sum_probs=379.1
Q ss_pred CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (922)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L 306 (922)
.+++.|+++++.... .++. .|..+++|++|+|++|.+. .+|..+. .+.+|++|++++|.+......+.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~--~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISG--KISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccc--cCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEE
Confidence 579999999987652 5554 4599999999999999997 7888765 999999999999998762223679999999
Q ss_pred EeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432 307 SLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (922)
Q Consensus 307 ~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (922)
++++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.. ..+..++++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l 211 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG-------------QIPRELGQM 211 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC-------------cCChHHcCc
Confidence 99999887 78999999999999999999755677776 9999999999999998875 567888999
Q ss_pred CCCCEEEeeecCCC-CCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhc
Q 002432 386 PRLTTLEIAVENDN-ALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRK 464 (922)
Q Consensus 386 ~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 464 (922)
++|+.|++++|... .+|..
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~------------------------------------------------------------ 231 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYE------------------------------------------------------------ 231 (968)
T ss_pred CCccEEECcCCccCCcCChh------------------------------------------------------------
Confidence 99999999988753 23332
Q ss_pred ccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccc
Q 002432 465 LQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDR 544 (922)
Q Consensus 465 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 544 (922)
...+++|+.|++.++......+..+ +.+++|++|+++++.....++ .....+++|+.|+++++.....++..
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~l~~~~p~~- 303 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDLSDNSLSGEIPEL- 303 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEECcCCeeccCCChh-
Confidence 1233566667776654433344333 578999999999885432221 12446788999999887643333322
Q ss_pred cccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecC
Q 002432 545 LSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLG 624 (922)
Q Consensus 545 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 624 (922)
...+++|+.|++.+|. +....+ ..+..+++|+.|++++|.....++.. ...+++|+.|+++
T Consensus 304 --~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~---------------l~~~~~L~~L~Ls 364 (968)
T PLN00113 304 --VIQLQNLEILHLFSNN-FTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKN---------------LGKHNNLTVLDLS 364 (968)
T ss_pred --HcCCCCCcEEECCCCc-cCCcCC-hhHhcCCCCCEEECcCCCCcCcCChH---------------HhCCCCCcEEECC
Confidence 4567899999998884 333322 35677899999999987644333321 2356888888888
Q ss_pred CCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhc
Q 002432 625 NLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLE 704 (922)
Q Consensus 625 ~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~ 704 (922)
++.-...++ ..+..+++|+.|++++|++....+..+ ..+++|+.|++++|+--..+| ..+..++
T Consensus 365 ~n~l~~~~p-------------~~~~~~~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~p--~~~~~l~ 428 (968)
T PLN00113 365 TNNLTGEIP-------------EGLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGELP--SEFTKLP 428 (968)
T ss_pred CCeeEeeCC-------------hhHhCcCCCCEEECcCCEecccCCHHH-hCCCCCCEEECcCCEeeeECC--hhHhcCC
Confidence 775333221 223456889999999997765433222 357899999999975433433 3478899
Q ss_pred cccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcccccccccc
Q 002432 705 QLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFS 784 (922)
Q Consensus 705 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~ 784 (922)
+|+.|++++|. +..... .....+++|+.|++++|.....++... ..++|+.|++++|.-...+|..
T Consensus 429 ~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~--- 494 (968)
T PLN00113 429 LVYFLDISNNN-LQGRIN-------SRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK--- 494 (968)
T ss_pred CCCEEECcCCc-ccCccC-------hhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh---
Confidence 99999999874 332211 112247889999999988776666543 4688999999987544444432
Q ss_pred ccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeE
Q 002432 785 FHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENL 864 (922)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L 864 (922)
+..+++|++|++++|.+....|..+. .+++|++|+|++|.+.......+..+++|+.|
T Consensus 495 -------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 495 -------------------LGSLSELMQLKLSENKLSGEIPDELS---SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred -------------------hhhhhccCEEECcCCcceeeCChHHc---CccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 35688999999999999877776643 78899999999988876544556899999999
Q ss_pred EEecccceEEecC-CccccccceEeccccccccccccC
Q 002432 865 NLSFCSYKELFSN-GGQVHLIKKLELICLNDLEYLWIP 901 (922)
Q Consensus 865 ~l~~c~l~~l~~~-~~~~~sL~~L~i~~c~~L~~l~~~ 901 (922)
++++|.+....|. ...+++|+.|++++|+-...+|..
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 9999988754443 355889999999999887778754
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=4.5e-28 Score=266.09 Aligned_cols=501 Identities=20% Similarity=0.201 Sum_probs=338.6
Q ss_pred EEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCC
Q 002432 212 ISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYST 290 (922)
Q Consensus 212 L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 290 (922)
++++.+....+|..+ ....+..|++..|... ..|-++..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l---~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL---SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc---cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 455566666677655 3334778888877644 555555566667999999999999999999999999999999999
Q ss_pred CCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccC
Q 002432 291 LGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEG 369 (922)
Q Consensus 291 l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~ 369 (922)
|.. |.+.+++.+|++|+|.+|.++.+|.++..+++|++|+++.|. +..+|.- +..++.+..+..++| ..
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~------- 149 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK------- 149 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh-------
Confidence 988 899999999999999999999999999999999999999986 8888875 888999999888887 21
Q ss_pred CcccccccCcccCCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccc
Q 002432 370 SSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSL 448 (922)
Q Consensus 370 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 448 (922)
+..++... ++.+++..+.. ..++..+ . .+
T Consensus 150 ---------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~--------------------------------------~l 179 (1081)
T KOG0618|consen 150 ---------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--Y--------------------------------------NL 179 (1081)
T ss_pred ---------hhhhcccc-chhhhhhhhhcccchhcch--h--------------------------------------hh
Confidence 12222222 55555554432 1111110 0 11
Q ss_pred eeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccc
Q 002432 449 RMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLEL 528 (922)
Q Consensus 449 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~ 528 (922)
+. . |++.+.... ......+++|+.+....+..... ...-++|+.
T Consensus 180 ~~-~---------------------ldLr~N~~~-----~~dls~~~~l~~l~c~rn~ls~l---------~~~g~~l~~ 223 (1081)
T KOG0618|consen 180 TH-Q---------------------LDLRYNEME-----VLDLSNLANLEVLHCERNQLSEL---------EISGPSLTA 223 (1081)
T ss_pred he-e---------------------eecccchhh-----hhhhhhccchhhhhhhhcccceE---------EecCcchhe
Confidence 11 1 222221111 11112344555555444422111 112356667
Q ss_pred cccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcc
Q 002432 529 LSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNN 608 (922)
Q Consensus 529 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 608 (922)
|+...++-.+.. ....-.+|+.++++.. ++..+| .++..+++|+.+.+.... +..++..
T Consensus 224 L~a~~n~l~~~~-----~~p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~r------------ 282 (1081)
T KOG0618|consen 224 LYADHNPLTTLD-----VHPVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHNR-LVALPLR------------ 282 (1081)
T ss_pred eeeccCcceeec-----cccccccceeeecchh-hhhcch--HHHHhcccceEecccchh-HHhhHHH------------
Confidence 777666643211 1222346778888765 566664 677778888888876643 4443321
Q ss_pred cccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccC
Q 002432 609 AIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGC 688 (922)
Q Consensus 609 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C 688 (922)
.....+|+.|.+..|+++.+++... .+.+|++|++..
T Consensus 283 ----------------------------------------i~~~~~L~~l~~~~nel~yip~~le--~~~sL~tLdL~~- 319 (1081)
T KOG0618|consen 283 ----------------------------------------ISRITSLVSLSAAYNELEYIPPFLE--GLKSLRTLDLQS- 319 (1081)
T ss_pred ----------------------------------------HhhhhhHHHHHhhhhhhhhCCCccc--ccceeeeeeehh-
Confidence 1135677888888888887765543 368899999988
Q ss_pred cCccccccHHHHhhhcc-ccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEE
Q 002432 689 QKLKFMFYASMIKSLEQ-LQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKL 767 (922)
Q Consensus 689 ~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 767 (922)
++|.++|. ..+.-+.. |+.|..+. ..+...+..+.. .++.|+.|.+.++.--....+.+. +...|+.|
T Consensus 320 N~L~~lp~-~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~-------~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVL 388 (1081)
T KOG0618|consen 320 NNLPSLPD-NFLAVLNASLNTLNVSS-NKLSTLPSYEEN-------NHAALQELYLANNHLTDSCFPVLV--NFKHLKVL 388 (1081)
T ss_pred ccccccch-HHHhhhhHHHHHHhhhh-ccccccccccch-------hhHHHHHHHHhcCcccccchhhhc--cccceeee
Confidence 68888765 33444433 77777764 466666532222 367899999988644444434444 78899999
Q ss_pred EEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCC
Q 002432 768 EVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDS 847 (922)
Q Consensus 768 ~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l 847 (922)
++++ +.|.++|.. ...+++.|++|++|+|++..+. +. ...+..|++|...+|.+
T Consensus 389 hLsy-NrL~~fpas---------------------~~~kle~LeeL~LSGNkL~~Lp-~t---va~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 389 HLSY-NRLNSFPAS---------------------KLRKLEELEELNLSGNKLTTLP-DT---VANLGRLHTLRAHSNQL 442 (1081)
T ss_pred eecc-cccccCCHH---------------------HHhchHHhHHHhcccchhhhhh-HH---HHhhhhhHHHhhcCCce
Confidence 9998 689999864 3477899999999999998875 33 34678999999999999
Q ss_pred cccchhHHhhcCCCCeEEEecccceEEecCCccc-cccceEeccccccccccccCCCCCCCcccccccEEEee
Q 002432 848 ASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQV-HLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTV 919 (922)
Q Consensus 848 ~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~-~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~ 919 (922)
..+| ++ ..++.|+.+|++.|.+..+.-....+ ++|+.|+++|++++ .++.+ .+..++.+...++.
T Consensus 443 ~~fP-e~-~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~----~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 443 LSFP-EL-AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHK----TLKVLKSLSQMDIT 508 (1081)
T ss_pred eech-hh-hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchh----hhHHhhhhhheecc
Confidence 9999 44 47999999999999887765555556 89999999998873 34444 34456666666553
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.3e-29 Score=249.44 Aligned_cols=176 Identities=27% Similarity=0.330 Sum_probs=134.8
Q ss_pred cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEc
Q 002432 208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCL 286 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 286 (922)
.+..+.+++|.+..+.+.. .+..+.+|.+.+|... ++|.++ +.+..++.|+.++|++.++|+.++.+..|+.|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~---~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS---QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh---hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 3455677777776665544 7777888888887766 677777 7788888888888888888888888888888888
Q ss_pred cCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432 287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
++|.+.+ |++|+.+..|..|+..+|+++.+|.++.++.+|..|++.+|. ++..|+.. -+++.|++|+...|-+.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~-i~m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH-IAMKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH-HHHHHHHhcccchhhhh---
Confidence 8888777 788888888888888888888888888888888888888875 77777773 34888888887666554
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
..+.+++.+.+|..|++..|.+..+|+
T Consensus 197 -----------tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 197 -----------TLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred -----------cCChhhcchhhhHHHHhhhcccccCCC
Confidence 567778888888888888777766663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1e-25 Score=234.66 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=135.2
Q ss_pred CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432 652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP 731 (922)
Q Consensus 652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 731 (922)
+++|+.|.+..|++..+..+.+. .+.++++|++.. +++..+ ..+++-+|++|+.|++++ +.+..+-...|.
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~-N~l~~v-n~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws----- 314 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLET-NRLQAV-NEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS----- 314 (873)
T ss_pred chhhhhhhhhhcCcccccCccee-eecccceeeccc-chhhhh-hcccccccchhhhhccch-hhhheeecchhh-----
Confidence 33444444444444433332222 345566666665 455544 334556666666666666 355555333222
Q ss_pred cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcc
Q 002432 732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLE 811 (922)
Q Consensus 732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 811 (922)
..++|++|+++++ .++.++++.+ ..+..|++|.+++ +.+..+.++ .+..+.+|+
T Consensus 315 --ftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~---------------------af~~lssL~ 368 (873)
T KOG4194|consen 315 --FTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEG---------------------AFVGLSSLH 368 (873)
T ss_pred --hcccceeEecccc-ccccCChhHH-HHHHHhhhhcccc-cchHHHHhh---------------------HHHHhhhhh
Confidence 2466666666663 4555544322 2577888888887 467776554 346688999
Q ss_pred eEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccc
Q 002432 812 ELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELIC 891 (922)
Q Consensus 812 ~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~ 891 (922)
+|++++|.+.-...+.-....++++|+.|.+.+|++.++|...+.++.+||.|++.+|.+.++.+....+..|++|-+..
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 99999998775433321124578899999999999999999999999999999999999999988887777899987753
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1e-24 Score=227.31 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=89.2
Q ss_pred ccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCC---ccccC
Q 002432 677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPE---LTCLY 753 (922)
Q Consensus 677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~~l~ 753 (922)
+++|+.|++++ ++++.+++ +.+..|..|++|.++++ .+..+.. ..+..+.+|++|+++++.- +++-.
T Consensus 316 tqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e-------~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHN-SIDHLAE-------GAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred cccceeEeccc-cccccCCh-hHHHHHHHhhhhccccc-chHHHHh-------hHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 35555555555 45555433 33555555555555552 3333311 0122345555555554321 22222
Q ss_pred CCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCC
Q 002432 754 PGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHL 833 (922)
Q Consensus 754 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 833 (922)
..+ .++++|++|++.| +++++++.- .+.++++||.|++.+|.+..+-+..|. .
T Consensus 386 ~~f--~gl~~LrkL~l~g-Nqlk~I~kr---------------------Afsgl~~LE~LdL~~NaiaSIq~nAFe---~ 438 (873)
T KOG4194|consen 386 VAF--NGLPSLRKLRLTG-NQLKSIPKR---------------------AFSGLEALEHLDLGDNAIASIQPNAFE---P 438 (873)
T ss_pred hhh--ccchhhhheeecC-ceeeecchh---------------------hhccCcccceecCCCCcceeecccccc---c
Confidence 222 3789999999988 689988764 357789999999999999988888766 3
Q ss_pred CCCccEEEeec------CCCcccchhHHhhcCCCCeEEEecc
Q 002432 834 FGSLKDLEVRD------DDSASVPIGLLEKFHGLENLNLSFC 869 (922)
Q Consensus 834 ~~sL~~L~l~~------~~l~~lp~~~l~~l~~L~~L~l~~c 869 (922)
+ .|++|.+.. +.+.=++.++.. ..++.-.+..|
T Consensus 439 m-~Lk~Lv~nSssflCDCql~Wl~qWl~~--~~lq~sv~a~C 477 (873)
T KOG4194|consen 439 M-ELKELVMNSSSFLCDCQLKWLAQWLYR--RKLQSSVIAKC 477 (873)
T ss_pred c-hhhhhhhcccceEEeccHHHHHHHHHh--cccccceeeec
Confidence 3 777777655 444445555543 23334444444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.4e-27 Score=237.84 Aligned_cols=455 Identities=19% Similarity=0.249 Sum_probs=270.0
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI 305 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 305 (922)
.-..+..+++++|... .+.+++ .++..|.+|++.+|+..++|.+++.+..+..++.++|++.. |+.++.+.+|+.
T Consensus 43 ~qv~l~~lils~N~l~---~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE---VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred hhcchhhhhhccCchh---hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 3456677777777654 444454 77788888888888888888888888888888888888777 788888888888
Q ss_pred EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432 306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (922)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (922)
|+.++|.+.++|++|+.+..|..|+..+|+ +..+|++ ++++.+|..|++.+|++. +.++..-++
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~--------------~l~~~~i~m 182 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK--------------ALPENHIAM 182 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh--------------hCCHHHHHH
Confidence 888888888888888888888888877765 7777776 777888888888777766 444555557
Q ss_pred CCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcc
Q 002432 386 PRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKL 465 (922)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 465 (922)
+.|++|+...|-.+.+|..+
T Consensus 183 ~~L~~ld~~~N~L~tlP~~l------------------------------------------------------------ 202 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPEL------------------------------------------------------------ 202 (565)
T ss_pred HHHHhcccchhhhhcCChhh------------------------------------------------------------
Confidence 77777777666666555542
Q ss_pred cCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCccccccccccccccccccccccccc
Q 002432 466 QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRL 545 (922)
Q Consensus 466 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 545 (922)
+++.+|..|++.++. +.+ .+..+++..|++|++.. ..++.++.+
T Consensus 203 --------------------------g~l~~L~~LyL~~Nk-i~~------lPef~gcs~L~Elh~g~-N~i~~lpae-- 246 (565)
T KOG0472|consen 203 --------------------------GGLESLELLYLRRNK-IRF------LPEFPGCSLLKELHVGE-NQIEMLPAE-- 246 (565)
T ss_pred --------------------------cchhhhHHHHhhhcc-ccc------CCCCCccHHHHHHHhcc-cHHHhhHHH--
Confidence 122222222222221 111 11122233333333332 112222222
Q ss_pred ccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCC
Q 002432 546 STESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGN 625 (922)
Q Consensus 546 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 625 (922)
....++++..|++.++ +++.+|. .+..+.+|++|++++.. ++.++
T Consensus 247 ~~~~L~~l~vLDLRdN-klke~Pd--e~clLrsL~rLDlSNN~-is~Lp------------------------------- 291 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDN-KLKEVPD--EICLLRSLERLDLSNND-ISSLP------------------------------- 291 (565)
T ss_pred Hhcccccceeeecccc-ccccCch--HHHHhhhhhhhcccCCc-cccCC-------------------------------
Confidence 1224566677777665 6666643 33456677777776632 33332
Q ss_pred CCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccC----C-----------------------------
Q 002432 626 LPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHN----Q----------------------------- 672 (922)
Q Consensus 626 c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~----------------------------- 672 (922)
..++++ .|+.|.+.||-+..+-.+ .
T Consensus 292 ---------------------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 292 ---------------------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred ---------------------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 222334 555666666622211000 0
Q ss_pred -----Cc--ccccCccEEEeccCcCccccccHHHHhhhc--cccEEEEecccccceEecccCCCCCCCcccccccceeec
Q 002432 673 -----TP--CCFQRLTRLIVWGCQKLKFMFYASMIKSLE--QLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISL 743 (922)
Q Consensus 673 -----~~--~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l 743 (922)
++ ....+.+.|++++ .+++.+|. +.|..-. -....+++.+ .+.+++. ....+..+.+.-+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd-EVfea~~~~~Vt~VnfskN-qL~elPk--------~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSD-KQLTLVPD-EVFEAAKSEIVTSVNFSKN-QLCELPK--------RLVELKELVTDLV 418 (565)
T ss_pred CCCCcccchhhhhhhhhhcccc-cccccCCH-HHHHHhhhcceEEEecccc-hHhhhhh--------hhHHHHHHHHHHH
Confidence 00 0122344444444 34444432 2222221 1233333331 3333311 0001122222222
Q ss_pred ccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhh
Q 002432 744 CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMML 823 (922)
Q Consensus 744 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 823 (922)
.....+...+... ..+++|..|++++ +-+.++|.+. +.+-.|+.|+|+.|++...
T Consensus 419 lsnn~isfv~~~l--~~l~kLt~L~L~N-N~Ln~LP~e~----------------------~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 419 LSNNKISFVPLEL--SQLQKLTFLDLSN-NLLNDLPEEM----------------------GSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred hhcCccccchHHH--Hhhhcceeeeccc-chhhhcchhh----------------------hhhhhhheecccccccccc
Confidence 3333333333222 3788888888886 4688888764 5677799999999876543
Q ss_pred cCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEecccccc
Q 002432 824 LQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLND 894 (922)
Q Consensus 824 ~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~ 894 (922)
+ .. ...+..|+.+-.++|.+.++|.+.++++.+|..|++.+|.++++||..|.+++|+.|+++|+|-
T Consensus 474 P-~~---~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 474 P-EC---LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred h-HH---HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 2 22 2234566777777799999988877889999999999999999999889999999999988765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-26 Score=249.72 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=83.5
Q ss_pred ceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc
Q 002432 801 FSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ 880 (922)
Q Consensus 801 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~ 880 (922)
+..+.+++.|+.|++++|++..+.... +..+..|++|++++|.++.+|..+ ..+..|++|...+|.+...| ....
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~---~~kle~LeeL~LSGNkL~~Lp~tv-a~~~~L~tL~ahsN~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASK---LRKLEELEELNLSGNKLTTLPDTV-ANLGRLHTLRAHSNQLLSFP-ELAQ 450 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHH---HhchHHhHHHhcccchhhhhhHHH-HhhhhhHHHhhcCCceeech-hhhh
Confidence 445567788888888888776655444 336778888888888888888766 47888888888888777765 5566
Q ss_pred ccccceEeccccccccccccCCCCCCCcccccccEEEeeecC
Q 002432 881 VHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEILKTVARS 922 (922)
Q Consensus 881 ~~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~~ 922 (922)
++.|+.+|+ +|++|+.+.... .+++ ++|++||+++|.
T Consensus 451 l~qL~~lDl-S~N~L~~~~l~~---~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDL-SCNNLSEVTLPE---ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEec-ccchhhhhhhhh---hCCC-cccceeeccCCc
Confidence 899999999 888887655321 1233 899999999884
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.8e-25 Score=229.83 Aligned_cols=113 Identities=19% Similarity=0.306 Sum_probs=55.7
Q ss_pred CChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCc--ccchhhcCC
Q 002432 247 IPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIV--EFPEELGKL 323 (922)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L 323 (922)
+|.+. ..+..++.|.|..+++..+|+.++.|.+|+.|.+.+|++.. -..++.|+.||.++++.|+++ .+|..|-+|
T Consensus 24 FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 24 FPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred CchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 34443 44555555555555555555555555555555555555444 344444555555555555433 445555555
Q ss_pred CCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 324 TKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
..|.+||+++|+ +..+|.+ +...+++-+|+|++|++.
T Consensus 103 ~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred ccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc
Confidence 555555555543 4555544 444455555555554444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.6e-21 Score=242.12 Aligned_cols=345 Identities=18% Similarity=0.237 Sum_probs=251.4
Q ss_pred ccCcceEEEeecCCC-------CCCCCCC-CC-CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhh
Q 002432 205 ALKKCYAISWIDSSG-------GELPEGL-EC-PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI 275 (922)
Q Consensus 205 ~~~~l~~L~l~~~~~-------~~l~~~~-~~-~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i 275 (922)
..++++.|.+..+.. ..+|..+ .+ .+||.|.+.++... .+|..+ .+.+|+.|+++++.+..+|..+
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---CMPSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---CCCCcC--CccCCcEEECcCcccccccccc
Confidence 356778888865532 1344444 33 47999999998765 788765 5789999999999999999999
Q ss_pred hccCCCCEEEccCCC-CCCccccCCCCcCCEEEeecC-CCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCE
Q 002432 276 DLLVNLQTLCLDYST-LGDITIIGKLKNLEILSLIES-DIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEE 353 (922)
Q Consensus 276 ~~L~~L~~L~L~~~~-l~~p~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~ 353 (922)
..+++|++|+|+++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence 999999999999987 555567899999999999998 67799999999999999999999889999986 4 8999999
Q ss_pred EEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccc
Q 002432 354 LYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWF 433 (922)
Q Consensus 354 L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~ 433 (922)
|++++|.... ..+. ..++|+.|+++++....+|..+.+++|..|.+.....
T Consensus 709 L~Lsgc~~L~-------------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~------------- 759 (1153)
T PLN03210 709 LNLSGCSRLK-------------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS------------- 759 (1153)
T ss_pred EeCCCCCCcc-------------cccc---ccCCcCeeecCCCccccccccccccccccccccccch-------------
Confidence 9999986542 1111 2458899999999988888876666666655321100
Q ss_pred ccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeec
Q 002432 434 RISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVD 513 (922)
Q Consensus 434 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~ 513 (922)
..+......+........++|+.|++.++.....++..+ +.+++|+.|++++|..++.++.
T Consensus 760 -----------------~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 760 -----------------EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -----------------hhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC
Confidence 000000000000001123678888888877666665554 5788888888888888777653
Q ss_pred CcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhh
Q 002432 514 SREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEI 593 (922)
Q Consensus 514 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 593 (922)
. ..+++|+.|++++|..+..++. ..++|+.|++.++ .++.+| ..+..+++|+.|++++|++++.+
T Consensus 821 ~------~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP--~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 821 G------INLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVP--WWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred C------CCccccCEEECCCCCccccccc------cccccCEeECCCC-CCccCh--HHHhcCCCCCEEECCCCCCcCcc
Confidence 2 2577888888888887766532 2357888888776 566553 24677888888888888888877
Q ss_pred hccCCCCCCccCCcccccccccCcccEEecCCCCCcccccc
Q 002432 594 FAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCC 634 (922)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 634 (922)
+... ..+++|+.+.+.+|++|..++.
T Consensus 886 ~~~~---------------~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 886 SLNI---------------SKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred Cccc---------------ccccCCCeeecCCCcccccccC
Confidence 6432 3577888888888888876543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.5e-24 Score=224.51 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=140.8
Q ss_pred ccCcceEEEeecCCC--CCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCC
Q 002432 205 ALKKCYAISWIDSSG--GELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL 281 (922)
Q Consensus 205 ~~~~l~~L~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 281 (922)
.++-+|-+++++|.+ ..+|... .++.++-|.+...... .+|+++ +.+.+|..|++++|++.++...++.|+.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~---~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE---QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh---hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 456677788888877 4567666 7788888888776654 688876 88888888888888888877778888888
Q ss_pred CEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432 282 QTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (922)
Q Consensus 282 ~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~ 358 (922)
|.++++.|++.. |..|-+|..|.+|||++|++++.|..+..-+++-+|++++|+ +..+|...+.+|+.|-.|+|++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 888888888754 788888888888888888888888888888888888888875 8888888778888888888888
Q ss_pred CcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 359 CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
|.+. ..+..+..+.+|++|.+++|....
T Consensus 160 NrLe--------------~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 160 NRLE--------------MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred chhh--------------hcCHHHHHHhhhhhhhcCCChhhH
Confidence 8776 566777888888888888776543
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.76 E-value=2.9e-19 Score=189.77 Aligned_cols=134 Identities=30% Similarity=0.505 Sum_probs=104.5
Q ss_pred cceEeCCCCCHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432 4 EANFSIEILNEEEAWRLFEVKLGND--DLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (922)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (922)
..+|++++|+++||++||++.|+.. ..++.+++++++|+++|+|+||||+++|++|+.+.+.++|+++++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999432 34566788999999999999999999999997766788899999887611111
Q ss_pred CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCccccc
Q 002432 82 NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGID 139 (922)
Q Consensus 82 ~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~ 139 (922)
.......+..++.+||+.||++ +|.||+|||+| +++.|++ .|+++|+|||||+.++
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 0012345999999999999998 89999999999 7899998 9999999999998753
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-18 Score=154.11 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=86.1
Q ss_pred CCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCC
Q 002432 222 LPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKL 300 (922)
Q Consensus 222 l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L 300 (922)
++..+.++++..|.+++|... .+|+.+ ..+++|++|++++|+|+++|.+++.++.||.|++.-|++.. |..|+.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~---~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT---VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCcee---ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 333344444455555555443 344444 55555555555555555555555555555555555555544 5555555
Q ss_pred CcCCEEEeecCCCc--ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccC
Q 002432 301 KNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKAS 378 (922)
Q Consensus 301 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 378 (922)
+-|+.||+.+|++. .+|..|-.++.|+.|+++.|. ++.+|++ ++++++||.|.+.+|.+. ..
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------------~l 165 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------------SL 165 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------------hC
Confidence 55555555555444 445555555555555555543 5555554 555555555555555444 34
Q ss_pred cccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 379 LDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 379 ~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
+.+++.++.|++|.+.+|....+|..
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChh
Confidence 45555555555555555555555543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-18 Score=152.25 Aligned_cols=158 Identities=24% Similarity=0.356 Sum_probs=145.9
Q ss_pred CCCCccccCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhc
Q 002432 199 EWPDEDALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL 277 (922)
Q Consensus 199 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 277 (922)
+++..-..+.+++|.+++|.+..+|+.+ ++.+|++|+++.|.+. ++|.++ +.+++||.|++.-|.+..+|..||.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSI-SSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhh-hhchhhhheecchhhhhcCccccCC
Confidence 3344445678999999999999999988 9999999999999887 899888 9999999999999999999999999
Q ss_pred cCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEE
Q 002432 278 LVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEEL 354 (922)
Q Consensus 278 L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 354 (922)
++-|++|||.+|.+.+ |..|-.++.|+-|+++.|.+.-+|..+++|++||.|.+..|. +-.+|.+ ++.++.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence 9999999999999875 889999999999999999999999999999999999999986 8889998 9999999999
Q ss_pred EccCCccc
Q 002432 355 YMSNCFVE 362 (922)
Q Consensus 355 ~L~~~~~~ 362 (922)
++.+|.+.
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 99999887
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-17 Score=166.86 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=106.6
Q ss_pred CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeec-CCCcccchh-h
Q 002432 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIE-SDIVEFPEE-L 320 (922)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~-~~l~~lp~~-i 320 (922)
.+|.++ ...-..++|..|+|+.+|+ +|+.+++||.|||++|.|+. |..|..|..|-.|-+.+ |+|+.+|.+ |
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 556544 3445678899999999975 78999999999999999887 78999999988887777 799999876 7
Q ss_pred cCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432 321 GKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397 (922)
Q Consensus 321 ~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (922)
++|..||.|.+.-|. +..++.+.+..|++|..|.+.+|.+.. ..-..+..+..++.+.+..|.
T Consensus 137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~-------------i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQS-------------ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhh-------------hccccccchhccchHhhhcCc
Confidence 999999999888875 888888888999999999998887762 112356667777777766554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.8e-15 Score=152.00 Aligned_cols=142 Identities=23% Similarity=0.259 Sum_probs=96.5
Q ss_pred EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeC-C
Q 002432 190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTN-M 266 (922)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~ 266 (922)
+...+.++.++|. +.+.....+.+..|.+..+|+.. .+++||.|++++|.++ .|.++.|.+++.|-.|-+.+ |
T Consensus 51 VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCC
Confidence 3344456666654 56677777778777777777654 6777777777777766 56666667777766655544 6
Q ss_pred cCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCC
Q 002432 267 QLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 267 ~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 335 (922)
+|+.+|. .|++|..|+-|.+.-|++.- .+.|..|++|..|.+..|.+..++. .+..+..++++.+..|.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 7777765 56777777777777777654 4667777777777777777776666 46777777777666554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=8.2e-14 Score=160.31 Aligned_cols=253 Identities=19% Similarity=0.115 Sum_probs=155.5
Q ss_pred cccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCC
Q 002432 527 ELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDN 606 (922)
Q Consensus 527 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 606 (922)
..|+++++ .++.+|.. -.++|+.|.+.++ +++.+|. ..++|++|+++++ +++.++.
T Consensus 204 ~~LdLs~~-~LtsLP~~-----l~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~----------- 259 (788)
T PRK15387 204 AVLNVGES-GLTTLPDC-----LPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV----------- 259 (788)
T ss_pred cEEEcCCC-CCCcCCcc-----hhcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC-----------
Confidence 34555554 44545432 1246888888775 5666642 2578888888775 5665542
Q ss_pred cccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEec
Q 002432 607 NNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVW 686 (922)
Q Consensus 607 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~ 686 (922)
.+++|+.|.+.++. +..++. .+++|+.|++++|+++.++. .+++|++|+++
T Consensus 260 -------lp~sL~~L~Ls~N~-L~~Lp~----------------lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS 310 (788)
T PRK15387 260 -------LPPGLLELSIFSNP-LTHLPA----------------LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVS 310 (788)
T ss_pred -------cccccceeeccCCc-hhhhhh----------------chhhcCEEECcCCccccccc-----cccccceeECC
Confidence 24667777776653 444331 13567777777777776643 23667777777
Q ss_pred cCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccE
Q 002432 687 GCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKK 766 (922)
Q Consensus 687 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 766 (922)
++ +++.+|. ...+|+.|++++| .++.++. ..++|+.|+++++ +++.+|. ..++|+.
T Consensus 311 ~N-~L~~Lp~-----lp~~L~~L~Ls~N-~L~~LP~-----------lp~~Lq~LdLS~N-~Ls~LP~-----lp~~L~~ 366 (788)
T PRK15387 311 DN-QLASLPA-----LPSELCKLWAYNN-QLTSLPT-----------LPSGLQELSVSDN-QLASLPT-----LPSELYK 366 (788)
T ss_pred CC-ccccCCC-----CcccccccccccC-ccccccc-----------cccccceEecCCC-ccCCCCC-----CCcccce
Confidence 73 6666542 1245667777664 4444421 0135777777763 4555553 2346667
Q ss_pred EEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCC
Q 002432 767 LEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDD 846 (922)
Q Consensus 767 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~ 846 (922)
|++++ +++..+|.. .++|+.|++++|++..+.. .+++|+.|++++|.
T Consensus 367 L~Ls~-N~L~~LP~l-------------------------~~~L~~LdLs~N~Lt~LP~-------l~s~L~~LdLS~N~ 413 (788)
T PRK15387 367 LWAYN-NRLTSLPAL-------------------------PSGLKELIVSGNRLTSLPV-------LPSELKELMVSGNR 413 (788)
T ss_pred ehhhc-cccccCccc-------------------------ccccceEEecCCcccCCCC-------cccCCCEEEccCCc
Confidence 77665 356555431 3568888888887764321 23578888888888
Q ss_pred CcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccc
Q 002432 847 SASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLN 893 (922)
Q Consensus 847 l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~ 893 (922)
+.++|.. ..+|+.|++++|.+..+|...+.+++|+.|++++++
T Consensus 414 LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 LTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 8888742 356778888888888776655667788888886664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=5.4e-13 Score=154.81 Aligned_cols=138 Identities=17% Similarity=0.281 Sum_probs=72.0
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 287 (922)
+...|.+.++.+..+|..+ .++|+.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK---SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC---cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3455666655555555432 134566666665544 4555442 355666666666655555443 245666666
Q ss_pred CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. ++.+|.. +. ++|+.|++++|.+.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 665555 44332 355666666555555555443 355666665553 5555543 22 34555555555444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=6.3e-12 Score=144.92 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=109.8
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccC
Q 002432 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 288 (922)
-..|+++.+.+..+|..+. ++|+.|++.+|... .+|. .+++|++|++++|+++.+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt---~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC---CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 4567788888877777552 47888888888765 5663 357888888888888888753 35788888888
Q ss_pred CCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccc
Q 002432 289 STLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVED 367 (922)
Q Consensus 289 ~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~ 367 (922)
|.+.. |.. ..+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. . .+|+.|++++|.+..
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS---- 336 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc----
Confidence 88777 442 25677888888888888753 4678888888875 7777652 2 356777888777652
Q ss_pred cCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 368 EGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
.+ .+ ..+|+.|++++|.+..+|.
T Consensus 337 ----------LP-~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 ----------LP-TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ----------cc-cc--ccccceEecCCCccCCCCC
Confidence 11 11 1468888888887776654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1.9e-12 Score=150.39 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=142.3
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (922)
..+.++..+|. .+++.++.|++++|.+..+|... ..+|+.|++++|... .+|..+ ..+|+.|++++|.+..+
T Consensus 185 L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt---sLP~~l---~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 185 LKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT---SIPATL---PDTIQEMELSINRITEL 256 (754)
T ss_pred eCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc---cCChhh---hccccEEECcCCccCcC
Confidence 33345555554 35678999999999999888755 368999999999876 788765 35799999999999999
Q ss_pred chhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC
Q 002432 272 PSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR 350 (922)
Q Consensus 272 p~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~ 350 (922)
|..+. .+|++|++++|++.. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~s 326 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPG 326 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--ccc
Confidence 98875 589999999999988 76664 589999999999999987654 479999999986 8888865 3 368
Q ss_pred CCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 351 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
|+.|++++|.+. ..+..+. ++|+.|++++|.+..+|..
T Consensus 327 L~~L~Ls~N~Lt--------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~ 364 (754)
T PRK15370 327 LKTLEAGENALT--------------SLPASLP--PELQVLDVSKNQITVLPET 364 (754)
T ss_pred ceeccccCCccc--------------cCChhhc--CcccEEECCCCCCCcCChh
Confidence 999999999876 2233332 6899999999988777764
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=7.7e-13 Score=155.98 Aligned_cols=174 Identities=24% Similarity=0.292 Sum_probs=123.8
Q ss_pred cCcceEEEeecCC--CCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCC
Q 002432 206 LKKCYAISWIDSS--GGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNL 281 (922)
Q Consensus 206 ~~~l~~L~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 281 (922)
...++.|-+..|. +..++.. ..++.||+||+++|.... ++|..+ +.+-+||||+++++.+..+|.++++|+.|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHH-hhhhhhhcccccCCCccccchHHHHHHhh
Confidence 3468999999986 5666653 389999999999986543 899988 99999999999999999999999999999
Q ss_pred CEEEccCCCC-CC-ccccCCCCcCCEEEeecCCCcc---cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEE--
Q 002432 282 QTLCLDYSTL-GD-ITIIGKLKNLEILSLIESDIVE---FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEEL-- 354 (922)
Q Consensus 282 ~~L~L~~~~l-~~-p~~i~~L~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L-- 354 (922)
.||++..+.- .. |..+..|++||+|.+....... .-..+.+|.+|+.+...... . .+-.. +..+++|+.+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQ 697 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhH
Confidence 9999999884 44 5666679999999998875331 22334556666666554432 1 12122 3344444432
Q ss_pred --EccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 355 --YMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 355 --~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
.+.++. ....+..+..+.+|+.|.+......
T Consensus 698 ~l~~~~~~--------------~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 698 SLSIEGCS--------------KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhcccc--------------cceeecccccccCcceEEEEcCCCc
Confidence 222211 2245677788888888888877654
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2.3e-12 Score=135.99 Aligned_cols=179 Identities=24% Similarity=0.291 Sum_probs=159.3
Q ss_pred CcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432 207 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 285 (922)
......+++.|++..+|... .+..|..+.+..|.+. .+|..+ ..+..|.+|||+.|+++.+|..++.|+ |++|.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 34556788889999999877 7788999999998876 788877 899999999999999999999988764 99999
Q ss_pred ccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
+++|+++. |+.++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|++ ++.| .|..||++.|++.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis-- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS-- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee--
Confidence 99999998 999999999999999999999999999999999999999986 8999988 7755 5899999999887
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccc
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFV 407 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 407 (922)
..+..+.+|++|++|-+.+|....-|..++.
T Consensus 225 ------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 ------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ------------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 6789999999999999999999888877633
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=1.1e-12 Score=133.46 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=101.6
Q ss_pred cccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432 676 CFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG 755 (922)
Q Consensus 676 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 755 (922)
.++-+.++++.+|..+++...-.....+..|+.|+.++|..+...+...... +.++|+.|.+..|..++.....
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ------HCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc------CCCceEEEeccccchhhhhhhh
Confidence 4566777777788777764222334566778888888887766554332222 2577888888888877665444
Q ss_pred cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCC-CCC-CCCC
Q 002432 756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQG-DFP-QDHL 833 (922)
Q Consensus 756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~~ 833 (922)
....+++.|+.+++.+|-....- .+.+...++|.|+.|.+++|....-... .+. ....
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~--------------------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG--------------------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred hhhcCChhhhhhcccccceehhh--------------------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 44457888888888887544332 1122335688899999998876432200 000 0123
Q ss_pred CCCccEEEeec-CCCcccchhHHhhcCCCCeEEEecc
Q 002432 834 FGSLKDLEVRD-DDSASVPIGLLEKFHGLENLNLSFC 869 (922)
Q Consensus 834 ~~sL~~L~l~~-~~l~~lp~~~l~~l~~L~~L~l~~c 869 (922)
...|..|.+++ +.+..--...+..+++||.+++.+|
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 45666677766 4444433444556666777777666
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=4.5e-13 Score=136.24 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=140.7
Q ss_pred CCCcceeeeccc-ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCC
Q 002432 652 LPNLEALELCEI-NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEP 730 (922)
Q Consensus 652 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 730 (922)
+++|++|+++.| .++.-......+++..++.+...+|..++.-.......+..-+.++++..|..+++......
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i----- 289 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI----- 289 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH-----
Confidence 444445555444 33331111122445667777777887765322222334556677788888977776632111
Q ss_pred CcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCc
Q 002432 731 PCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL 810 (922)
Q Consensus 731 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 810 (922)
...+..|+.|..++|.++.+........++++|+.|.+++|.++.... +.....+++.|
T Consensus 290 -~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------------------ft~l~rn~~~L 348 (483)
T KOG4341|consen 290 -ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------------------FTMLGRNCPHL 348 (483)
T ss_pred -hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------------------hhhhhcCChhh
Confidence 123677999999999988776544334578999999999998876552 12234678999
Q ss_pred ceEeechhhhhhhcC-CCCCCCCCCCCccEEEeec-CCCcc-----cchhHHhhcCCCCeEEEecccceEEec--CCccc
Q 002432 811 EELGLSIKDIMMLLQ-GDFPQDHLFGSLKDLEVRD-DDSAS-----VPIGLLEKFHGLENLNLSFCSYKELFS--NGGQV 881 (922)
Q Consensus 811 ~~L~l~~~~~~~~~~-~~~~~~~~~~sL~~L~l~~-~~l~~-----lp~~~l~~l~~L~~L~l~~c~l~~l~~--~~~~~ 881 (922)
+.+++..|....... ..+ -..++.|++|.+++ ..++. +.... .....|+.|.+++|+.+.-.. ....+
T Consensus 349 e~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~-c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSS-CSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhcccccceehhhhHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhcc-ccccccceeeecCCCCchHHHHHHHhhC
Confidence 999999886543220 011 23567888888886 22222 12221 356678888888885543211 11336
Q ss_pred cccceEeccccccccccccCCCCCCCcccccccEE
Q 002432 882 HLIKKLELICLNDLEYLWIPNSKMGDSILQNLEIL 916 (922)
Q Consensus 882 ~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~l 916 (922)
++|+.+++.+|...++=+..-+. +.++++++.
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~~~---~~lp~i~v~ 457 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISRFA---THLPNIKVH 457 (483)
T ss_pred cccceeeeechhhhhhhhhHHHH---hhCccceeh
Confidence 78888888888777765555555 555665554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.2e-10 Score=109.85 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=47.6
Q ss_pred hCCCCCcEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhh-cCCCCCCEEe
Q 002432 253 TGMRELKVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLD 330 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 330 (922)
.+..++|.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+..+.+..+++|++|++++|.++.++.++ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34556788888888877763 355 57788888888888888777778888888888888888776555 3678888888
Q ss_pred ccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEee
Q 002432 331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIA 394 (922)
Q Consensus 331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 394 (922)
+++|. +..+.. ..++.+++|+.|++.+|.+.. ......--+..+|+|+.||-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~----------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE----------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG----------STTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccc----------hhhHHHHHHHHcChhheeCCE
Confidence 88874 544322 236678888888888887763 111222334566777777654
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.3e-11 Score=128.54 Aligned_cols=183 Identities=22% Similarity=0.321 Sum_probs=153.9
Q ss_pred EEEeecCCCCCCCCC---CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432 211 AISWIDSSGGELPEG---LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 287 (922)
++.|++.....+|.. ..+..-...+++.|.+. .+|..+ ..+..|..+.|..|.+..+|..+++|..|.||||+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~---elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS---ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc---cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence 345555555444432 25666777889999877 788887 88899999999999999999999999999999999
Q ss_pred CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
.|+++. |..++.|+ |+.|-+++|+++.+|.+|+.+..|..|+.+.|. +..+|.. ++.+.+|+.|.+..|++.
T Consensus 130 ~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~---- 202 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE---- 202 (722)
T ss_pred cchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh----
Confidence 999998 88776654 899999999999999999999999999999986 8999988 999999999999999887
Q ss_pred ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc-cccccceeEE
Q 002432 367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKI 415 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~ 415 (922)
..+++++.| .|..|++++|.+..+|..+ .++.|+.+.+
T Consensus 203 ----------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 203 ----------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred ----------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 567888855 5889999999999999876 5666666553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=9.6e-10 Score=103.68 Aligned_cols=119 Identities=26% Similarity=0.343 Sum_probs=32.9
Q ss_pred cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhh-hccCCCCEEE
Q 002432 208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSI-DLLVNLQTLC 285 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~ 285 (922)
+.|.|++.+|.+..+.... .+.+|++|++++|.+. .+.. +..+++|++|++++|.|+.+++.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~---~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT---KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S-----TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc---cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4455666666665554332 3455566666655544 3332 345555666666666655554433 2455566666
Q ss_pred ccCCCCCC---ccccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEec
Q 002432 286 LDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDL 331 (922)
Q Consensus 286 L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l 331 (922)
+++|+|.+ ...+..+++|++|++.+|.++..+. -+..+++|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 65555543 2444455555555555554443321 2344555555543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.7e-10 Score=112.17 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=139.6
Q ss_pred cccCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcC---------------------CCCCChHHhhCCCCCcEE
Q 002432 204 DALKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSV---------------------DVNIPQRFFTGMRELKVV 261 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~---------------------~~~l~~~~~~~l~~Lr~L 261 (922)
.+.++++.+.++.+....+.... .-+.|.++.+.....+. .|.+...+ ...+.|..|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSA-DTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEec-chHhhhhhc
Confidence 34566677777776654443322 23455555554322110 11111222 456889999
Q ss_pred EeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccC
Q 002432 262 DLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIA 341 (922)
Q Consensus 262 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 341 (922)
||++|.|+.+.+++.-++.+|+|++++|.|....++..|++|+.||+++|.++++-..=.+|-|.++|.+++|. +..+.
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS 368 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS 368 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh
Confidence 99999999999999999999999999999999888999999999999999999886666789999999999985 77775
Q ss_pred cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 342 PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 342 ~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
. +++|-+|..|++++|++.. -.....+++++-|+.+.+.+|....++..
T Consensus 369 G--L~KLYSLvnLDl~~N~Ie~------------ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 369 G--LRKLYSLVNLDLSSNQIEE------------LDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h--hHhhhhheeccccccchhh------------HHHhcccccccHHHHHhhcCCCccccchH
Confidence 3 8899999999999998873 13457889999999999999987766543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=3.5e-09 Score=117.98 Aligned_cols=174 Identities=25% Similarity=0.315 Sum_probs=125.6
Q ss_pred CcceEEEeecCCCCCCCCCCCCC--CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 207 KKCYAISWIDSSGGELPEGLECP--QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
..++.+++.++.+..++...... +|+.|++++|... .+|..+ ..++.|+.|++++|++..+|...+.+..|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh---hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 45777888888877777766443 7888888887665 554444 77888888888888888887777777888888
Q ss_pred EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
++++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..|.+.+|. +..++.. ++.+.+++.|++++|.+..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccccc
Confidence 888888877 666667777888888887666666777788888888777664 5554444 7777888888888777652
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
+..++.+.+++.|+++++.....
T Consensus 270 ---------------i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 270 ---------------ISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------------cccccccCccCEEeccCcccccc
Confidence 23377777888888887765443
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=5e-09 Score=116.70 Aligned_cols=184 Identities=26% Similarity=0.348 Sum_probs=144.1
Q ss_pred EEEeecCCC-CCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCC-CCcEEEeeCCcCccCchhhhccCCCCEEEccC
Q 002432 211 AISWIDSSG-GELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMR-ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 211 ~L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 288 (922)
.+....+.+ .........+.++.|++.++... +++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~---~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT---DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc---cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 355555555 33333346688999999998876 677655 5564 89999999999999988899999999999999
Q ss_pred CCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccc
Q 002432 289 STLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVED 367 (922)
Q Consensus 289 ~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~ 367 (922)
|++.+ |...+.+.+|+.|++++|+++.+|..+..+..|++|.+++|. ....+.. +.+++++..|.+.++.+.
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~----- 245 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE----- 245 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-----
Confidence 99998 666668999999999999999999888888889999999985 4444444 788999999888877665
Q ss_pred cCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeE
Q 002432 368 EGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFK 414 (922)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 414 (922)
..+..++.++.+++|++++|.+..++....+.+++.+.
T Consensus 246 ---------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 246 ---------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred ---------eccchhccccccceeccccccccccccccccCccCEEe
Confidence 33577888889999999999988777633444444444
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.77 E-value=3e-09 Score=115.11 Aligned_cols=182 Identities=19% Similarity=0.150 Sum_probs=103.8
Q ss_pred CcceEEEeecCCCCC-CCCCC-CC---CCccEEEccCCCCcCC--CCCChHHhhCC-CCCcEEEeeCCcCc-----cCch
Q 002432 207 KKCYAISWIDSSGGE-LPEGL-EC---PQLELLLLSSEHSSVD--VNIPQRFFTGM-RELKVVDLTNMQLF-----SLPS 273 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~-l~~~~-~~---~~Lr~L~l~~~~~~~~--~~l~~~~~~~l-~~Lr~L~L~~~~i~-----~lp~ 273 (922)
.+++.|++.+|.+.. .+..+ .+ ++|+.|++++|..... ..+.. .+..+ ++|+.|++++|.++ .++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 467777777776642 11111 22 4477777777754310 01111 23455 77777777777766 2344
Q ss_pred hhhccCCCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCccCc
Q 002432 274 SIDLLVNLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAP 342 (922)
Q Consensus 274 ~i~~L~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 342 (922)
.+..+.+|++|++++|.+.. +..+..+++|++|++++|.++ .++..+.++++|++|++++|. ++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence 56666777777777777663 134455567777777777664 234455667777777777764 443111
Q ss_pred chhC-----CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 343 NVIA-----SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 343 ~~l~-----~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
..+. ..+.|++|++++|.+.. .........+..+++|+.+++++|...
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~---------~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITD---------DGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCc---------HHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1121 23677777777776641 001122344555567777777777654
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.77 E-value=6.9e-09 Score=112.26 Aligned_cols=131 Identities=24% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCC---CcEEEeeCCcCcc-----Cchhhhcc-CCCCEEEccCCCCCC----
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRE---LKVVDLTNMQLFS-----LPSSIDLL-VNLQTLCLDYSTLGD---- 293 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~---Lr~L~L~~~~i~~-----lp~~i~~L-~~L~~L~L~~~~l~~---- 293 (922)
.+++|+.|++++|... ......|..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.+..
T Consensus 79 ~~~~L~~L~l~~~~~~---~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 79 KGCGLQELDLSDNALG---PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred hcCceeEEEccCCCCC---hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 4556777777666543 112222233333 7777777766651 23345555 667777777776652
Q ss_pred --ccccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCcc-----CcchhCCCCCCCEEEccCCcc
Q 002432 294 --ITIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVI-----APNVIASFTRLEELYMSNCFV 361 (922)
Q Consensus 294 --p~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~-----p~~~l~~L~~L~~L~L~~~~~ 361 (922)
+..+..+.+|++|++++|.++ .++..+..+++|++|++++|. ++.. +. .+.++++|++|++++|.+
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE-TLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH-HhcccCCCCEEecCCCcC
Confidence 234555666777777766655 233444555667777776664 3321 22 245566677777766655
Q ss_pred c
Q 002432 362 E 362 (922)
Q Consensus 362 ~ 362 (922)
.
T Consensus 234 ~ 234 (319)
T cd00116 234 T 234 (319)
T ss_pred c
Confidence 4
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9.3e-10 Score=107.10 Aligned_cols=129 Identities=24% Similarity=0.229 Sum_probs=109.6
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCc-cccCCCCcCCEE
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDI-TIIGKLKNLEIL 306 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p-~~i~~L~~L~~L 306 (922)
...|..+++++|.+. .+.++. .-.+.+|+|++++|.|..+-. +..|++|+.|||++|.+.+. .--.+|-|.++|
T Consensus 283 Wq~LtelDLS~N~I~---~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT---QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh---hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 356889999999876 677766 778999999999999987754 88999999999999998883 444588999999
Q ss_pred EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccc
Q 002432 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~ 363 (922)
.+++|.+..+ .++++|++|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999999888 479999999999999986 665532 349999999999999998764
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-08 Score=102.30 Aligned_cols=189 Identities=23% Similarity=0.169 Sum_probs=126.0
Q ss_pred cCcceEEEeecCCCCCCCC--CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh--hhccCC
Q 002432 206 LKKCYAISWIDSSGGELPE--GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVN 280 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~ 280 (922)
.+++|.+++.++.....+. .. .|+++|.|++++|-+.-. ..-..+...+++|+.|+++.|.+...-++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 5678888888887766653 23 788999999988754311 11233447789999999999887643322 236778
Q ss_pred CCEEEccCCCCCC--c-cccCCCCcCCEEEeecCC-CcccchhhcCCCCCCEEeccCCCCCCccC-cchhCCCCCCCEEE
Q 002432 281 LQTLCLDYSTLGD--I-TIIGKLKNLEILSLIESD-IVEFPEELGKLTKLRLLDLTNCFHLKVIA-PNVIASFTRLEELY 355 (922)
Q Consensus 281 L~~L~L~~~~l~~--p-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~~l~~L~~L~~L~ 355 (922)
|+.|.|+.|.++. . .....+++|+.|++.+|. +..-......+..|+.|+|++|. +-..+ ....+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 9999999998874 3 455678889999998883 33223345567788899999886 44443 11277888888888
Q ss_pred ccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 356 MSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 356 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
++.|.+.. +... ...........++|+.|++..|.+..++.
T Consensus 278 ls~tgi~s---i~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 278 LSSTGIAS---IAEP----DVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccCcch---hcCC----CccchhhhcccccceeeecccCccccccc
Confidence 88887652 1110 01122334567788899988888765554
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=3.9e-07 Score=96.57 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=96.7
Q ss_pred ccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCc
Q 002432 677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGL 756 (922)
Q Consensus 677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 756 (922)
+..+++|+|++| .++.+| .-.++|++|.+++|.+++.++.. -.++|++|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCch----------hhhhhhheEccCcccccccc---
Confidence 477888888888 777764 12346888888888887666420 12468888888887776553
Q ss_pred CcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCC
Q 002432 757 HTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGS 836 (922)
Q Consensus 757 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~s 836 (922)
++|+.|++.+ .....++. ..++|++|.+.+++... +...+ ...+++
T Consensus 112 -----~sLe~L~L~~-n~~~~L~~-------------------------LPssLk~L~I~~~n~~~--~~~lp-~~LPsS 157 (426)
T PRK15386 112 -----ESVRSLEIKG-SATDSIKN-------------------------VPNGLTSLSINSYNPEN--QARID-NLISPS 157 (426)
T ss_pred -----cccceEEeCC-CCCccccc-------------------------CcchHhheecccccccc--ccccc-cccCCc
Confidence 3567777753 33333211 13467777775433111 11111 123478
Q ss_pred ccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEe-cCCccccccceEeccccccc
Q 002432 837 LKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELF-SNGGQVHLIKKLELICLNDL 895 (922)
Q Consensus 837 L~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~-~~~~~~~sL~~L~i~~c~~L 895 (922)
|++|.++++....+|..+ ..+|+.|+++.|....+. +....++++ .|++.+|-++
T Consensus 158 Lk~L~Is~c~~i~LP~~L---P~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 158 LKTLSLTGCSNIILPEKL---PESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccEEEecCCCcccCcccc---cccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 888988886665566443 268888888776322211 112235667 7888777554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.8e-08 Score=99.75 Aligned_cols=179 Identities=24% Similarity=0.244 Sum_probs=132.8
Q ss_pred cccCcceEEEeecCCCCCCC---CCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc--cCchhhhc
Q 002432 204 DALKKCYAISWIDSSGGELP---EGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF--SLPSSIDL 277 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~---~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~ 277 (922)
.....+|.|+++.|-+.... ... .+++|+.|+++.|.... -.....-..+.+|+.|.+++|.++ .+-.-...
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--CccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 55788999999999774332 222 78999999999997642 111111235789999999999987 33334557
Q ss_pred cCCCCEEEccCCC-CCC-ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCCCEEeccCCCCCCccC--cc----hhCC
Q 002432 278 LVNLQTLCLDYST-LGD-ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIA--PN----VIAS 347 (922)
Q Consensus 278 L~~L~~L~L~~~~-l~~-p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p--~~----~l~~ 347 (922)
+++|..|+|.+|. +.. -....-++.|+.|||++|++...+ ..++.++.|+.|+++.|. +.++. +. ....
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 8899999999996 322 455567899999999999888776 457999999999999974 66542 21 1256
Q ss_pred CCCCCEEEccCCccc-ccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 348 FTRLEELYMSNCFVE-WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 348 L~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
+.+|+.|++..|++. | ..+..+..+++|+.|.+.++..
T Consensus 300 f~kL~~L~i~~N~I~~w-------------~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDW-------------RSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccceeeecccCccccc-------------cccchhhccchhhhhhcccccc
Confidence 889999999999874 3 4566777778888888877764
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=6e-07 Score=104.65 Aligned_cols=105 Identities=23% Similarity=0.323 Sum_probs=83.6
Q ss_pred CCcEEEeeCCcCc-cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEecc
Q 002432 257 ELKVVDLTNMQLF-SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLT 332 (922)
Q Consensus 257 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 332 (922)
.++.|+|++|.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4677888888887 578888888888888888888875 678888888888998888887 678888888889999988
Q ss_pred CCCCCCccCcchhCC-CCCCCEEEccCCccc
Q 002432 333 NCFHLKVIAPNVIAS-FTRLEELYMSNCFVE 362 (922)
Q Consensus 333 ~~~~l~~~p~~~l~~-L~~L~~L~L~~~~~~ 362 (922)
+|...+.+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 88755677776 555 356777888777544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=6.9e-07 Score=94.74 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=99.2
Q ss_pred HhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccc
Q 002432 700 IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFA 779 (922)
Q Consensus 700 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~ 779 (922)
+..+..++.|+|++| .++.++. . -++|++|.+++|.+++.+|.. ..++|+.|++++|.++..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--L---------P~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--L---------PNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--C---------CCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccc
Confidence 445789999999999 7887741 1 246999999999999988753 25689999999998887774
Q ss_pred cccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeec-CCC--cccchhHHh
Q 002432 780 SESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD-DDS--ASVPIGLLE 856 (922)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~-~~l--~~lp~~~l~ 856 (922)
++|+.|+++.+....+ . ..+++|+.|.+.+ +.. ..+|. .
T Consensus 112 ----------------------------~sLe~L~L~~n~~~~L--~-----~LPssLk~L~I~~~n~~~~~~lp~-~-- 153 (426)
T PRK15386 112 ----------------------------ESVRSLEIKGSATDSI--K-----NVPNGLTSLSINSYNPENQARIDN-L-- 153 (426)
T ss_pred ----------------------------cccceEEeCCCCCccc--c-----cCcchHhheecccccccccccccc-c--
Confidence 3678888876554332 1 2346899999865 222 22221 1
Q ss_pred hcCCCCeEEEecccceEEecCCccccccceEeccccc
Q 002432 857 KFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLN 893 (922)
Q Consensus 857 ~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~ 893 (922)
-.++|+.|++++|....+++ ..|.+|+.|+++.+.
T Consensus 154 LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 154 ISPSLKTLSLTGCSNIILPE--KLPESLQSITLHIEQ 188 (426)
T ss_pred cCCcccEEEecCCCcccCcc--cccccCcEEEecccc
Confidence 23789999999997665543 357899999997653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.2e-07 Score=71.71 Aligned_cols=56 Identities=34% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCC
Q 002432 257 ELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESD 312 (922)
Q Consensus 257 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~ 312 (922)
+|++|++++|+++.+| ..|..+++|++|++++|.+.. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666554 345556666666666666555 3556666666666666654
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=8.2e-07 Score=103.53 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEc
Q 002432 280 NLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356 (922)
Q Consensus 280 ~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L 356 (922)
.++.|+|++|.+.. |..++++++|++|+|++|.++ .+|..++++++|++|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999999876 788999999999999999988 78889999999999999999755567776 999999999999
Q ss_pred cCCcccccccccCCcccccccCcccCCCC-CCCCEEEeeecCC
Q 002432 357 SNCFVEWKVEDEGSSSKKSKASLDELMPL-PRLTTLEIAVEND 398 (922)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 398 (922)
++|.+.+ ..+..++.+ .++..+++.+|..
T Consensus 498 s~N~l~g-------------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSG-------------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccc-------------cCChHHhhccccCceEEecCCcc
Confidence 9998876 445555543 4677888888764
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.2e-07 Score=70.84 Aligned_cols=60 Identities=27% Similarity=0.436 Sum_probs=32.0
Q ss_pred cCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEeccc
Q 002432 808 PNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCS 870 (922)
Q Consensus 808 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~ 870 (922)
|+|++|++++|++..+.++.|. .+++|++|++++|.+..+|.+.+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~---~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS---NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT---TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHc---CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3455555555555555444433 44555555555555555555555555555555555553
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=2.4e-07 Score=103.18 Aligned_cols=152 Identities=24% Similarity=0.299 Sum_probs=79.5
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L 306 (922)
.+.+|+.|++.+|.+. .+... +..+.+|++|++++|.|+++.. +..+..|+.|++.+|.|.....+..+.+|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~---~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE---KIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchh---hcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcc
Confidence 4555666666655543 22221 2445666666666666665532 44555566666666666665555556666666
Q ss_pred EeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432 307 SLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (922)
Q Consensus 307 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (922)
++++|.++.+... ...+.+++.+.+.+|. +..+.. +..+..+..+++..|.+. .+.++..+
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---------------~~~~l~~~ 229 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---------------KLEGLNEL 229 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce---------------eccCcccc
Confidence 6666666555432 3555666666666553 333321 233333333444444433 12333333
Q ss_pred CC--CCEEEeeecCCCCC
Q 002432 386 PR--LTTLEIAVENDNAL 401 (922)
Q Consensus 386 ~~--L~~L~l~~~~~~~~ 401 (922)
.. |+.+++.++.....
T Consensus 230 ~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRISRS 247 (414)
T ss_pred hhHHHHHHhcccCccccc
Confidence 33 67777777776554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.3e-08 Score=95.86 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCCcCCEEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCccCcc-hhCCCCCCCEEEccCCccc
Q 002432 299 KLKNLEILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKVIAPN-VIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 299 ~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~l~~L~~L~~L~L~~~~~~ 362 (922)
.+.+|+.|.+.|+++. .+-..|.+-.+|+.|+++.|++++..... .+.+++.|+.|++++|...
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 3344444444444333 22334555555666666665555443221 2456777777777777654
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=5e-06 Score=58.41 Aligned_cols=37 Identities=38% Similarity=0.564 Sum_probs=21.1
Q ss_pred CCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC
Q 002432 257 ELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD 293 (922)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~ 293 (922)
+|++|++++|+|+++|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666665556666666666666665554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.3e-07 Score=103.34 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=93.7
Q ss_pred cCcceEEEeecCCCCCCCCCCCC-CCccEEEccCCCCc-------CCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhc
Q 002432 206 LKKCYAISWIDSSGGELPEGLEC-PQLELLLLSSEHSS-------VDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDL 277 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~-------~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 277 (922)
.+.+|+|-+.++.+........+ ..|+.|.....-.. ..|++..+. ....|.+.+.++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 46788888888877543322211 23334433221000 001111111 123455566666666666566666
Q ss_pred cCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEc
Q 002432 278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYM 356 (922)
Q Consensus 278 L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L 356 (922)
++.|+.|+|++|++.+...+..|++|++|||++|.++.+|.- ...+ +|+.|++++|. ++.+-. +.+|++|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 666666666666666655666666666666666666666542 1222 26666666653 555532 666666666666
Q ss_pred cCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 357 SNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
++|-+.. ...+..+..+..|+.|.+.||...
T Consensus 262 syNll~~------------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhc------------chhhhHHHHHHHHHHHhhcCCccc
Confidence 6665542 123444555556666666666543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=8.2e-08 Score=104.89 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=100.6
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLE 304 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~ 304 (922)
....|.+.++++|... .+..+ +.-++.|+.|+|++|++.+.. .+..|.+|++|||++|.+.. | -+...+. |+
T Consensus 162 ~Wn~L~~a~fsyN~L~---~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV---LMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhHhhhhcchhhHH---hHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-he
Confidence 4457778888888654 34444 477899999999999998875 78899999999999999988 4 2233344 99
Q ss_pred EEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 305 ILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 305 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
.|++++|.++++ .+|.+|.+|+.||+++|-..+.---..++.|..|++|+|.||.+-
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999988 579999999999999984222222223778889999999999764
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=1.8e-06 Score=87.08 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=130.1
Q ss_pred cceEEEeecCCCC--CCCC---CC-CCCCccEEEccCCCCcCC-CCC-C--------hHHhhCCCCCcEEEeeCCcCccC
Q 002432 208 KCYAISWIDSSGG--ELPE---GL-ECPQLELLLLSSEHSSVD-VNI-P--------QRFFTGMRELKVVDLTNMQLFSL 271 (922)
Q Consensus 208 ~l~~L~l~~~~~~--~l~~---~~-~~~~Lr~L~l~~~~~~~~-~~l-~--------~~~~~~l~~Lr~L~L~~~~i~~l 271 (922)
+++.++|++|.++ .++. .+ .+..|+.|.+.+|..... |.. . ....+.-..||++....|.+..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 7899999999883 2322 22 788999999998876421 111 0 11124568899999999988743
Q ss_pred -----chhhhccCCCCEEEccCCCCCCc------cccCCCCcCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCC
Q 002432 272 -----PSSIDLLVNLQTLCLDYSTLGDI------TIIGKLKNLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 272 -----p~~i~~L~~L~~L~L~~~~l~~p------~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 335 (922)
...+...+.|+.+.++.|.|..+ ..+..+++|+.|||..|-++ .+-..+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 34577788999999999998652 56889999999999999766 344557788899999999985
Q ss_pred CCCccC-----cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 336 HLKVIA-----PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 336 ~l~~~p-----~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
++.-- ...-...++|++|.+.+|.+..+ ........+...+.|+.|++++|...
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcCCccccc
Confidence 44321 22123478999999999988741 11123345566889999999999864
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.4e-06 Score=97.07 Aligned_cols=172 Identities=24% Similarity=0.297 Sum_probs=130.5
Q ss_pred cccCcceEEEeecCCCCCCCC-CCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCC
Q 002432 204 DALKKCYAISWIDSSGGELPE-GLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ 282 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 282 (922)
....+++.+++.+|.+..+.. ...+.+|++|++++|.+. ++.. +..+..|+.|++++|.|..++. +..+..|+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~---~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT---KLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccc---cccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence 345788999999999988888 558999999999999876 4443 3677889999999999998754 56689999
Q ss_pred EEEccCCCCCCccc--cCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC--CCEEEccC
Q 002432 283 TLCLDYSTLGDITI--IGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR--LEELYMSN 358 (922)
Q Consensus 283 ~L~L~~~~l~~p~~--i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~--L~~L~L~~ 358 (922)
.+++++|.+...+. ...+.+|+.+++.+|.+..+. ++..+..+..+++..|. +..+-. +..+.. |+++++.+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhccc
Confidence 99999999988544 689999999999999887653 45555666666777764 554432 444444 89999998
Q ss_pred CcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 359 CFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+.+.. ....+..+..+..|++..+...
T Consensus 242 n~i~~--------------~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 242 NRISR--------------SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred Ccccc--------------ccccccccccccccchhhcccc
Confidence 87762 1156667777778887766644
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.3e-05 Score=56.26 Aligned_cols=38 Identities=39% Similarity=0.567 Sum_probs=19.0
Q ss_pred cCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCcc
Q 002432 302 NLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVI 340 (922)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 340 (922)
+|++|++++|+++.+|..+++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555555555555555445555555555555553 4444
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.3e-06 Score=96.94 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=83.5
Q ss_pred CcceEEEeecCCCC--CCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCC
Q 002432 207 KKCYAISWIDSSGG--ELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQ 282 (922)
Q Consensus 207 ~~l~~L~l~~~~~~--~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 282 (922)
.++++|++.|...- .-+.. ..++.||+|.+.+-.... +--...+..+++|+.||+|+++++.+ ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 46778888775431 11111 167888888888754321 11234457888999999999988888 6788899999
Q ss_pred EEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccch-------hhcCCCCCCEEeccCC
Q 002432 283 TLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFPE-------ELGKLTKLRLLDLTNC 334 (922)
Q Consensus 283 ~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~~ 334 (922)
+|.+++=.+.. ...+-.|++|++||+|......-+. .-..|++||.||.++.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 99888877764 4677788888888888764332221 1133667777776654
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=2.4e-06 Score=74.01 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=54.5
Q ss_pred hCCCCCcEEEeeCCcCccCchhhhcc-CCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEe
Q 002432 253 TGMRELKVVDLTNMQLFSLPSSIDLL-VNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLD 330 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 330 (922)
.+..+|...+|++|.++++|+.|... +.+++|++.+|+|.+ |..+..++.|+.|+++.|.+...|..|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44455666666666666666655433 256666666666666 6556666666666666666666666666666666666
Q ss_pred ccCCCCCCccCcc
Q 002432 331 LTNCFHLKVIAPN 343 (922)
Q Consensus 331 l~~~~~l~~~p~~ 343 (922)
..+|. ...+|..
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 66653 4445443
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.8e-06 Score=83.46 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=31.1
Q ss_pred CCcceeeeccc--ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecc
Q 002432 653 PNLEALELCEI--NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNC 714 (922)
Q Consensus 653 ~~L~~L~l~~~--~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 714 (922)
+.|..|+|+|| ++..-....+...+|+|.+||+++|..++.- -...+..++.|++|.++.|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhh
Confidence 45555566655 3322222222234566666666666666541 2233455566666666666
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.9e-05 Score=90.21 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=76.6
Q ss_pred CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (922)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L 306 (922)
.+|+.|+++|.... ....|..+...++.||.|.+++-.+. ++-.-..++++|+.||++++.++....+++|++||.|
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 57777777775432 23455555566777777777776554 2233345667777777777777777777777777777
Q ss_pred EeecCCCccc--chhhcCCCCCCEEeccCCCCCCccCc------chhCCCCCCCEEEccCCccc
Q 002432 307 SLIESDIVEF--PEELGKLTKLRLLDLTNCFHLKVIAP------NVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 307 ~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~------~~l~~L~~L~~L~L~~~~~~ 362 (922)
.+.+=.+..- -..+-+|++|++||++... ....+. +.-..|++||.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6665444421 1345667777777776643 222111 00123666666666655443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=3.8e-06 Score=72.86 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=90.6
Q ss_pred ceEEEeecCCCCCCCCCC----CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 209 CYAISWIDSSGGELPEGL----ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
...++++.|.+..+++.. +...|...++++|.+. ++|..+-.+++.+..|++++|.|.++|..+..++.||.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345666677666555432 6677888899999876 788888778889999999999999999999999999999
Q ss_pred EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchh
Q 002432 285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEE 319 (922)
Q Consensus 285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~ 319 (922)
+++.|.+.. |..|..|.+|-+|+..+|.+..+|..
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 999999887 98888999999999999988888765
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.61 E-value=2.6e-06 Score=98.25 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=46.0
Q ss_pred CCCcceeeecccc-eeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEeccccc
Q 002432 652 LPNLEALELCEIN-VKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL 717 (922)
Q Consensus 652 l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 717 (922)
+++|+.|+++.|. +++.........+++|++|.+.+|..+++..-......+++|++|+|++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4666777777773 55543333334478888888888887766555556777888999999888776
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=9.1e-05 Score=69.21 Aligned_cols=124 Identities=27% Similarity=0.342 Sum_probs=76.5
Q ss_pred cEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcC-CCCCCEEeccCCCC
Q 002432 259 KVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGK-LTKLRLLDLTNCFH 336 (922)
Q Consensus 259 r~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~ 336 (922)
|.++|.+.++..+-. ++ -+.+...+||+.|.+.....|..+..|.+|.+..|.|+.+-..+.. +++|+.|.+.+|+
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs- 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS- 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-
Confidence 444555544433222 22 1335667777777777766777777788888877777777555543 4567888777764
Q ss_pred CCc---cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeec
Q 002432 337 LKV---IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVE 396 (922)
Q Consensus 337 l~~---~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 396 (922)
+.. +.+ +..+++|+.|.+-+|.+.. ....-.--+..+++|+.|+....
T Consensus 100 i~~l~dl~p--La~~p~L~~Ltll~Npv~~----------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDP--LASCPKLEYLTLLGNPVEH----------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcch--hccCCccceeeecCCchhc----------ccCceeEEEEecCcceEeehhhh
Confidence 333 333 6677788888877776653 11133345667778888887644
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00024 Score=66.43 Aligned_cols=100 Identities=23% Similarity=0.367 Sum_probs=57.2
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhh-ccCCCCEEEccCCCCCC---ccccCCCCcCCE
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSID-LLVNLQTLCLDYSTLGD---ITIIGKLKNLEI 305 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~ 305 (922)
+...+|++.|... .++. |.+++.|..|.+.+|.|..+-..+. -+++|.+|.|.+|+|.+ ..-+..++.|++
T Consensus 43 ~~d~iDLtdNdl~---~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR---KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecccccchh---hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3445555555433 2222 4566666666666666666644343 34456666666666654 344555666777
Q ss_pred EEeecCCCcccch----hhcCCCCCCEEeccCC
Q 002432 306 LSLIESDIVEFPE----ELGKLTKLRLLDLTNC 334 (922)
Q Consensus 306 L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~ 334 (922)
|.+-+|.++.... -+.++++|++||..+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7776666554332 3566777777776653
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=9.9e-06 Score=93.35 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=76.8
Q ss_pred CcceeEEeeccccCccccccccccccccCCcEEEEecC-CCceEeecCcccccCcccccccccccccccccccccccccc
Q 002432 468 IRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNN-PDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLS 546 (922)
Q Consensus 468 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 546 (922)
.++|+.|.+.++....+..........++|+.|++.++ ......+ ..........++|+.|.++.+..+.+......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhccCchhHHHH-
Confidence 47788888888776665221112256889999999873 2221111 00111234457888888888886554422211
Q ss_pred cccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432 547 TESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591 (922)
Q Consensus 547 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 591 (922)
...+++|+.|.+.+|..++..........+++|++|++++|..++
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 122678999998888876655444556678889999999988763
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.34 E-value=0.00011 Score=74.47 Aligned_cols=129 Identities=18% Similarity=0.162 Sum_probs=62.3
Q ss_pred CcceEEEeecCCCCCCCCC-----C-CCCCccEEEccCCCCcCCCC-CChHHhhCCCCCcEEEeeCCcCc-----cCchh
Q 002432 207 KKCYAISWIDSSGGELPEG-----L-ECPQLELLLLSSEHSSVDVN-IPQRFFTGMRELKVVDLTNMQLF-----SLPSS 274 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~~-----~-~~~~Lr~L~l~~~~~~~~~~-l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~ 274 (922)
..+|++....|++..-+.. + ..+.|+.+.+..|.+...|. .....|..+++|++|||..|.++ .+-+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4567777776666443321 1 23455666665555432221 22223455666666666666554 23344
Q ss_pred hhccCCCCEEEccCCCCCC--c----ccc-CCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCC
Q 002432 275 IDLLVNLQTLCLDYSTLGD--I----TII-GKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 275 i~~L~~L~~L~L~~~~l~~--p----~~i-~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 335 (922)
++.+++||.|++++|.++. - ..+ ...++|++|.+.+|.++. +-..+...+.|+.|++++|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 5555566666666665543 1 111 124555555555554441 12223344445555555443
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=5.5e-05 Score=74.65 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=34.0
Q ss_pred CCCCCcEEEeeCCcCcc---CchhhhccCCCCEEEccCCCCCC-cccc-CCCCcCCEEEeecCCC
Q 002432 254 GMRELKVVDLTNMQLFS---LPSSIDLLVNLQTLCLDYSTLGD-ITII-GKLKNLEILSLIESDI 313 (922)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~-p~~i-~~L~~L~~L~L~~~~l 313 (922)
...+++.|||.+|.|+. +-.-+.++++|++|+|+.|++.. +.+. ..+.+|++|-|.|+.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 34566666666666652 22334456666666666666554 3444 3556666666666544
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00054 Score=67.86 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=25.2
Q ss_pred hCCCCCCCEEEccCCccc-ccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432 345 IASFTRLEELYMSNCFVE-WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (922)
...++.+--|+|+.+++. | +.+.++..+++|+.|.+..+.
T Consensus 220 se~~p~~~~LnL~~~~idsw-------------asvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSW-------------ASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCCcchhhhhcccccccH-------------HHHHHHcCCchhheeeccCCc
Confidence 344555666666665543 2 456677777778777777665
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0021 Score=63.19 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=42.0
Q ss_pred hCCCCCcEEEeeCC--cCc-cCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEEeecCCCcccc----hhhcC
Q 002432 253 TGMRELKVVDLTNM--QLF-SLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILSLIESDIVEFP----EELGK 322 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~L~~~~l~~lp----~~i~~ 322 (922)
..+++|+.|.++.| .+. .++...-++++|++|++++|+|.. .....++.+|..||+..|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34455555555555 222 233333344555666665555443 233445555666666666544331 12455
Q ss_pred CCCCCEEeccCC
Q 002432 323 LTKLRLLDLTNC 334 (922)
Q Consensus 323 L~~L~~L~l~~~ 334 (922)
+++|.+|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 667777765554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00018 Score=70.43 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=39.1
Q ss_pred CCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccC
Q 002432 280 NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSN 358 (922)
Q Consensus 280 ~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~ 358 (922)
+.+-|+..+|.+.++....+++.|++|.|+-|+|+.+- .+..+++|++|+|..|. +.++.+ ..+.++++|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhcc
Confidence 34444455555544444445555555555555555542 24555555555555543 433322 1244555555555555
Q ss_pred Ccc
Q 002432 359 CFV 361 (922)
Q Consensus 359 ~~~ 361 (922)
|.-
T Consensus 98 NPC 100 (388)
T KOG2123|consen 98 NPC 100 (388)
T ss_pred CCc
Confidence 443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0022 Score=63.01 Aligned_cols=101 Identities=26% Similarity=0.371 Sum_probs=64.1
Q ss_pred hCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCC--CCCC--ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCC
Q 002432 253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYS--TLGD--ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKL 326 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~l~~--p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L 326 (922)
..+..|..|++.+..++.+ ..+..|++|++|+++.| .+.. +....++++|++|++++|+++.+. .....+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445556666655555443 23556778888888888 4443 344556688888888888776331 246777888
Q ss_pred CEEeccCCCCCCccC---cchhCCCCCCCEEE
Q 002432 327 RLLDLTNCFHLKVIA---PNVIASFTRLEELY 355 (922)
Q Consensus 327 ~~L~l~~~~~l~~~p---~~~l~~L~~L~~L~ 355 (922)
..|++.+|. ...+. ...+.-+++|..|+
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhcccc
Confidence 888888875 33332 22345577777776
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.00082 Score=65.99 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=42.2
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCC
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLE 304 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~ 304 (922)
+.+.+.|++.|+... +| ++..+|+.|.||.|+-|+|+.+. .+..|++|+.|.|+.|.|.. ..-+.+|++|+
T Consensus 18 l~~vkKLNcwg~~L~---DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc---HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 445566666666443 22 23456666777777766666652 25555666666666655544 23344444444
Q ss_pred EEEeecC
Q 002432 305 ILSLIES 311 (922)
Q Consensus 305 ~L~L~~~ 311 (922)
+|-|..|
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 4444433
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.028 Score=51.04 Aligned_cols=100 Identities=18% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhc
Q 002432 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELG 321 (922)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~ 321 (922)
.++...|..+..|+.+.+.++ +..++. .+.++..|+.+.+.. .+.. ...|..+.+|+.+++..+ +..++. .+.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~ 101 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS 101 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence 344444555555555555443 444432 344444555555533 2222 234444555555555432 333322 234
Q ss_pred CCCCCCEEeccCCCCCCccCcchhCCCCCC
Q 002432 322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRL 351 (922)
Q Consensus 322 ~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L 351 (922)
+. +|+.+.+.. .+..++...|.+.++|
T Consensus 102 ~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 102 NC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--T--EEE-TT--B-SS----GGG-----
T ss_pred CC-CceEEEECC--CccEECCccccccccC
Confidence 43 555554443 2344444444444433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0044 Score=36.03 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=12.6
Q ss_pred cCCEEEeecCCCcccchhhcC
Q 002432 302 NLEILSLIESDIVEFPEELGK 322 (922)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~ 322 (922)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 456666666666666655544
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.62 E-value=0.01 Score=58.31 Aligned_cols=87 Identities=30% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCC---C--c-------cccCCCCcCCEEEeecCCCc-c
Q 002432 254 GMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLG---D--I-------TIIGKLKNLEILSLIESDIV-E 315 (922)
Q Consensus 254 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~---~--p-------~~i~~L~~L~~L~L~~~~l~-~ 315 (922)
.+..+..++||+|.|. .+...|.+-.+|++.+++.-... + + ..+-++++|+..+|+.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3556666666666654 23334455556666665543211 1 1 23445666666666666433 2
Q ss_pred cc----hhhcCCCCCCEEeccCCCCCCccC
Q 002432 316 FP----EELGKLTKLRLLDLTNCFHLKVIA 341 (922)
Q Consensus 316 lp----~~i~~L~~L~~L~l~~~~~l~~~p 341 (922)
.| +-|.+-+.|.+|.+.+|. ++.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 22 234555666666666653 44443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0054 Score=35.64 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=15.5
Q ss_pred CCcEEEeeCCcCccCchhhhc
Q 002432 257 ELKVVDLTNMQLFSLPSSIDL 277 (922)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~i~~ 277 (922)
+|++||+++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467888888887777776654
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.35 E-value=0.036 Score=50.30 Aligned_cols=107 Identities=14% Similarity=0.282 Sum_probs=64.9
Q ss_pred CCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhc
Q 002432 246 NIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELG 321 (922)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~ 321 (922)
.+++..|.+..+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +.. -..|..+.+|+.+.+.. .+..++. .+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35666788888999999875 5677754 6788888999998774 666 36688888899998865 5555544 467
Q ss_pred CCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432 322 KLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (922)
Q Consensus 322 ~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~ 358 (922)
++++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 7888888888663 667777767776 888887654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.44 E-value=0.047 Score=29.33 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=6.1
Q ss_pred cCCEEEeecCCCcccc
Q 002432 302 NLEILSLIESDIVEFP 317 (922)
Q Consensus 302 ~L~~L~L~~~~l~~lp 317 (922)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555544443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=0.021 Score=54.03 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=28.9
Q ss_pred ccCccEEEeccCcCccccccHHHHhhhccccEEEEeccccc
Q 002432 677 FQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGL 717 (922)
Q Consensus 677 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 717 (922)
.++|+.|+|++|+++++- ....+..+++|+.|.|.+.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 578888888888888763 3455677778888877775444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.016 Score=54.80 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred CcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432 520 CDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591 (922)
Q Consensus 520 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 591 (922)
...++.++.|.+.+|..+.+|+.+.+.. -.++|+.|+|++|+++++- ....+..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 3345667778888888887776554433 5788888888888888765 33455667788888887765443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.67 E-value=0.073 Score=28.59 Aligned_cols=16 Identities=50% Similarity=0.798 Sum_probs=7.0
Q ss_pred CCcEEEeeCCcCccCc
Q 002432 257 ELKVVDLTNMQLFSLP 272 (922)
Q Consensus 257 ~Lr~L~L~~~~i~~lp 272 (922)
+||+|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.03 E-value=0.004 Score=59.63 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=41.6
Q ss_pred hCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEec
Q 002432 253 TGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDL 331 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 331 (922)
..++.-++||++.|....+-..++.+..|.-|+++.|.+.. |.+++.+..++++++..|+.+..|.++++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44555555555555554444444444555555555544444 44555555555555555544555555555555555544
Q ss_pred cCC
Q 002432 332 TNC 334 (922)
Q Consensus 332 ~~~ 334 (922)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 443
No 78
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.92 E-value=2.2 Score=53.46 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=94.6
Q ss_pred eEeCC----CCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432 6 NFSIE----ILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (922)
Q Consensus 6 ~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (922)
..++. +++.+|+.++|....+..-. .+...+|.+.|+|.|+++..++..++...... ......+. .
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~----~ 245 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLA----G 245 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhc----C
Confidence 44555 89999999999987754321 34567899999999999999888776542110 11111111 0
Q ss_pred CCccchHHHHHHHHH-HHhcCCchhHHHHHhhccccCCCchhHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhcce
Q 002432 82 NFHRELGKAYTAIKL-SYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLL 160 (922)
Q Consensus 82 ~~~~~~~~~~~~l~l-sY~~L~~~~lk~cfly~~~f~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~l~ 160 (922)
.+. ..+...+.- .|+.||++ .+..+...|+++.+. .++... +... +++ .+.+.+|.+.++|
T Consensus 246 ~~~---~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~--~~l~~~-----l~~~---~~~----~~~L~~l~~~~l~ 307 (903)
T PRK04841 246 INA---SHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMN--DALIVR-----VTGE---ENG----QMRLEELERQGLF 307 (903)
T ss_pred CCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCC--HHHHHH-----HcCC---CcH----HHHHHHHHHCCCe
Confidence 001 124444333 37899998 899999999996333 233221 1111 122 2348888888886
Q ss_pred e-ccc-ccceEEecHHHHHHHHHHH
Q 002432 161 L-EGY-SCREFSMHDVVHDVAILIA 183 (922)
Q Consensus 161 ~-~~~-~~~~~~mhdli~dl~~~~~ 183 (922)
. ..+ +..+|..|++++++.....
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHH
Confidence 4 332 3357899999999987664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.79 E-value=0.0085 Score=57.48 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=68.5
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI 305 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 305 (922)
.+...++||++.|... .+-.. |+.+..|..||++.|.+..+|..++.+..++.+++..|..+. |.++++++++++
T Consensus 40 ~~kr~tvld~~s~r~v---n~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV---NLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH---hhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 6678888898888643 23333 467788888999999999999999998999999999888887 899999999999
Q ss_pred EEeecCCCc
Q 002432 306 LSLIESDIV 314 (922)
Q Consensus 306 L~L~~~~l~ 314 (922)
+++.+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999888655
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.06 E-value=0.32 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CcCCEEEeecCCCcccchh
Q 002432 301 KNLEILSLIESDIVEFPEE 319 (922)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~~ 319 (922)
++|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.06 E-value=0.32 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CcCCEEEeecCCCcccchh
Q 002432 301 KNLEILSLIESDIVEFPEE 319 (922)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~~ 319 (922)
++|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666655554
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.53 E-value=1.1 Score=44.58 Aligned_cols=133 Identities=19% Similarity=0.304 Sum_probs=72.3
Q ss_pred CCCCccEEEccCCCCcCCCCCC---hHHhhCCCCCcEEEeeCCcCccCch-hh-------------hccCCCCEEEccCC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIP---QRFFTGMRELKVVDLTNMQLFSLPS-SI-------------DLLVNLQTLCLDYS 289 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~i~~lp~-~i-------------~~L~~L~~L~L~~~ 289 (922)
+|++|+..+++.|.+.. ..| .+++++-..|..|.+++|.+..+.. .| .+-+.|++.+...|
T Consensus 90 kcp~l~~v~LSDNAfg~--~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGS--EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cCCcceeeeccccccCc--ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 67777777777776543 222 2334666777777777776543211 12 23355777777777
Q ss_pred CCCC-c-----cccCCCCcCCEEEeecCCCcc-----c-chhhcCCCCCCEEeccCCCCCCccCc----chhCCCCCCCE
Q 002432 290 TLGD-I-----TIIGKLKNLEILSLIESDIVE-----F-PEELGKLTKLRLLDLTNCFHLKVIAP----NVIASFTRLEE 353 (922)
Q Consensus 290 ~l~~-p-----~~i~~L~~L~~L~L~~~~l~~-----l-p~~i~~L~~L~~L~l~~~~~l~~~p~----~~l~~L~~L~~ 353 (922)
++.. + ..+..-.+|+++.+..|.|.. + -.+...+.+|++||+..|. ++.... .++..-+.|++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhh
Confidence 7654 3 123333567777777665541 1 1234556677777777664 332211 12344455666
Q ss_pred EEccCCccc
Q 002432 354 LYMSNCFVE 362 (922)
Q Consensus 354 L~L~~~~~~ 362 (922)
|.+.+|-+.
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 666666544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.81 E-value=0.67 Score=28.09 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=13.8
Q ss_pred CCCCcEEEeeCCcCccCchh
Q 002432 255 MRELKVVDLTNMQLFSLPSS 274 (922)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~ 274 (922)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.81 E-value=0.67 Score=28.09 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=13.8
Q ss_pred CCCCcEEEeeCCcCccCchh
Q 002432 255 MRELKVVDLTNMQLFSLPSS 274 (922)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~ 274 (922)
+.+|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.61 E-value=1.1 Score=27.18 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=13.7
Q ss_pred CCCccEEEEecCCCcccc
Q 002432 761 WPELKKLEVFSCDKLNTF 778 (922)
Q Consensus 761 l~~L~~L~l~~c~~L~~l 778 (922)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888877654
No 86
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=75.04 E-value=13 Score=38.69 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=43.2
Q ss_pred ceEeCCCCCHHHHHHHHHHHh---CCCCCChhh-HHHHHHHHHHhCCCcchHHHHHHHh
Q 002432 5 ANFSIEILNEEEAWRLFEVKL---GNDDLIPRM-KSTATHIVKECGGLPIAIEPIAKAL 59 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~-~~~~~~i~~~c~glPlai~~~g~~L 59 (922)
..+++++++.+|..+++..++ +... ...+ ++..+.|++.|+|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~-~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRD-APVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCC-CCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 467899999999999998877 2211 1223 5789999999999999999988877
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.29 E-value=3 Score=25.25 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=10.1
Q ss_pred CccEEEeecCCCcccch
Q 002432 836 SLKDLEVRDDDSASVPI 852 (922)
Q Consensus 836 sL~~L~l~~~~l~~lp~ 852 (922)
+|+.|.+++|.+.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 55666666666666553
No 88
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=65.14 E-value=1.5e+02 Score=31.77 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=57.5
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCCCc
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFH 84 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~ 84 (922)
.+++++++++++..+++.+.++..... --++....|++.|+|.|-.+..+...+ ..|..+... .....
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~-----~~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD-----GVITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC-----CCCCH
Confidence 468899999999999999998432211 113678999999999995444444322 122211100 01111
Q ss_pred cchHHHHHHHHHHHhcCCchhHHHHHh-hccccC
Q 002432 85 RELGKAYTAIKLSYDALKGEQLKKIFQ-LCSLMP 117 (922)
Q Consensus 85 ~~~~~~~~~l~lsY~~L~~~~lk~cfl-y~~~f~ 117 (922)
.........+...|..|+..+ +.-+. ....|.
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~ 273 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcC
Confidence 122334455556677787763 55443 555563
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.09 E-value=5.2 Score=24.32 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=9.5
Q ss_pred CCcCCEEEeecCCCccc
Q 002432 300 LKNLEILSLIESDIVEF 316 (922)
Q Consensus 300 L~~L~~L~L~~~~l~~l 316 (922)
+++|+.|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 34566666666655443
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.64 E-value=43 Score=35.52 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=38.4
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHH
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAK 57 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~ 57 (922)
.++++++++.+|..+++.+.++..... --.+....|++.|+|.|-.+..++.
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 467899999999999999998322111 1145678899999999976655554
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=53.44 E-value=6.4 Score=23.15 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=6.7
Q ss_pred CcCCEEEeecCCCc
Q 002432 301 KNLEILSLIESDIV 314 (922)
Q Consensus 301 ~~L~~L~L~~~~l~ 314 (922)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666665544
No 92
>PF14516 AAA_35: AAA-like domain
Probab=50.71 E-value=50 Score=35.49 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=44.1
Q ss_pred CcceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcC
Q 002432 3 SEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNK 62 (922)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~ 62 (922)
+...+++++++.+|..+|..++-..-. + +..++|...++|.|--+..++..+..+
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~~~--~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLEFS--Q---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhccCC--H---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 456789999999999999887652211 1 228899999999999999999999765
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.35 E-value=0.58 Score=52.57 Aligned_cols=132 Identities=22% Similarity=0.238 Sum_probs=66.9
Q ss_pred CCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC------ccc----cCCCCcCCEEEeecCCCcc-----c
Q 002432 257 ELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD------ITI----IGKLKNLEILSLIESDIVE-----F 316 (922)
Q Consensus 257 ~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~------p~~----i~~L~~L~~L~L~~~~l~~-----l 316 (922)
.|++|++..|.+. .+.+.+....+++.++++.|.+.. +.. +....++++|++.+|.++. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 3444555555443 233444455556666666655421 112 2345666666666665541 1
Q ss_pred chhhcCCCC-CCEEeccCCCCCCcc-----CcchhCCC-CCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCC
Q 002432 317 PEELGKLTK-LRLLDLTNCFHLKVI-----APNVIASF-TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLT 389 (922)
Q Consensus 317 p~~i~~L~~-L~~L~l~~~~~l~~~-----p~~~l~~L-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 389 (922)
-..+..... ++.|++..|. +... .+. +..+ ..+++++++.|.+.. .......+.+..++.++
T Consensus 225 ~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~---------~~~~~L~~~l~~~~~l~ 293 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNK-LGDVGVEKLLPC-LSVLSETLRVLDLSRNSITE---------KGVRDLAEVLVSCRQLE 293 (478)
T ss_pred HHHHhccchhhHHHHHHhcC-cchHHHHHHHHH-hcccchhhhhhhhhcCCccc---------cchHHHHHHHhhhHHHH
Confidence 122344444 5556666654 3322 222 4444 566777777776653 11112334455566777
Q ss_pred EEEeeecCCC
Q 002432 390 TLEIAVENDN 399 (922)
Q Consensus 390 ~L~l~~~~~~ 399 (922)
+|.++.|...
T Consensus 294 ~l~l~~n~l~ 303 (478)
T KOG4308|consen 294 ELSLSNNPLT 303 (478)
T ss_pred HhhcccCccc
Confidence 7777766543
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.74 E-value=20 Score=22.15 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=7.0
Q ss_pred CCcEEEeeCCcCc
Q 002432 257 ELKVVDLTNMQLF 269 (922)
Q Consensus 257 ~Lr~L~L~~~~i~ 269 (922)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 95
>COG3899 Predicted ATPase [General function prediction only]
Probab=34.64 E-value=4.4e+02 Score=32.56 Aligned_cols=108 Identities=15% Similarity=0.242 Sum_probs=79.4
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcC------CCHHHHHHHHHHhcCC
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNK------TESECWKNALHELRMP 78 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~------~~~~~W~~~l~~~~~~ 78 (922)
..+.++||+..|.-.+-....++.. ....+..+.|++|..|.|+-+.-+-..+... .+...|..=..++.
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-- 287 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-- 287 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCcc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--
Confidence 6789999999999999998886532 2235678999999999999998888888764 23445553333332
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCch
Q 002432 79 TENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFF 121 (922)
Q Consensus 79 ~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~ 121 (922)
.....+++...|..--+.||.. -|...-..|++ +.+..
T Consensus 288 ----~~~~~~~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l 326 (849)
T COG3899 288 ----ILATTDAVVEFLAARLQKLPGT-TREVLKAAACIGNRFDL 326 (849)
T ss_pred ----CchhhHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCccCCH
Confidence 1223344666788889999998 69999999999 55544
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.59 E-value=18 Score=40.30 Aligned_cols=72 Identities=24% Similarity=0.129 Sum_probs=44.6
Q ss_pred ccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecC--CCcccchhHHhhcCCCCeEEEecccceEEecC
Q 002432 805 KIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDD--DSASVPIGLLEKFHGLENLNLSFCSYKELFSN 877 (922)
Q Consensus 805 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~--~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~ 877 (922)
.+.|.+..+.+++|++..+-.-.-- ....+.|++|+|++| .+.+.++----+..-|++|.+.+|++.+-+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl-sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL-SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH-HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhh
Confidence 4567788888888876543211000 123458899999987 55554332222456688999999988765443
No 97
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.57 E-value=80 Score=21.97 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=4.3
Q ss_pred cCcceEeec
Q 002432 808 PNLEELGLS 816 (922)
Q Consensus 808 ~~L~~L~l~ 816 (922)
++++.|.+.
T Consensus 12 ~~l~~L~~g 20 (44)
T PF05725_consen 12 SSLKSLIFG 20 (44)
T ss_pred CCCeEEEEC
Confidence 345555553
No 98
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.71 E-value=4.2 Score=45.81 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=84.9
Q ss_pred CccEEEccCCCCcCC--CCCChHHhhCCCCCcEEEeeCCcCc-----cCchhhh----ccCCCCEEEccCCCCCCc----
Q 002432 230 QLELLLLSSEHSSVD--VNIPQRFFTGMRELKVVDLTNMQLF-----SLPSSID----LLVNLQTLCLDYSTLGDI---- 294 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~--~~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~----~L~~L~~L~L~~~~l~~p---- 294 (922)
.+++|.+..|..... ..+...+ ....+++.++++.|.+. .++..+. ...++++|.+.+|.++.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHH-hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 344455544443221 1234443 45788888888888763 2334444 477899999999987652
Q ss_pred --cccCCCCc-CCEEEeecCCCc-----ccchhhcCC-CCCCEEeccCCCCCCccC----cchhCCCCCCCEEEccCCcc
Q 002432 295 --TIIGKLKN-LEILSLIESDIV-----EFPEELGKL-TKLRLLDLTNCFHLKVIA----PNVIASFTRLEELYMSNCFV 361 (922)
Q Consensus 295 --~~i~~L~~-L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~~~p----~~~l~~L~~L~~L~L~~~~~ 361 (922)
..+....+ ++.|++..|++. .+...+..+ ..++++++..|+ ++.-. ...+....++++|.+.+|.+
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 34556666 777999888665 344556666 788999999986 43321 12256677899999988876
Q ss_pred c
Q 002432 362 E 362 (922)
Q Consensus 362 ~ 362 (922)
.
T Consensus 303 ~ 303 (478)
T KOG4308|consen 303 T 303 (478)
T ss_pred c
Confidence 5
No 99
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=20.61 E-value=5.9e+02 Score=27.99 Aligned_cols=138 Identities=10% Similarity=0.143 Sum_probs=77.2
Q ss_pred ceEeCCCCCHHHHHHHHHHHh--C--CCCCC-hhhHHHHHHHHHHhCCCcchHHHHHHH--hh---cCC--CHHHHHHHH
Q 002432 5 ANFSIEILNEEEAWRLFEVKL--G--NDDLI-PRMKSTATHIVKECGGLPIAIEPIAKA--LR---NKT--ESECWKNAL 72 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~--~--~~~~~-~~~~~~~~~i~~~c~glPlai~~~g~~--L~---~~~--~~~~W~~~l 72 (922)
..+.+++++.++..+.+..++ + ....+ +.++.+++.+....|..+.|+.++-.. .+ ++. +.++++.+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 356899999999999999988 2 22222 334445555544467788888776432 22 111 566666666
Q ss_pred HHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc--C--CCchhH-HHH--HHHHhcCCc-ccccHHHHH
Q 002432 73 HELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM--P--KSFFAS-DLF--KYCIGLGIF-RGIDMEDAR 144 (922)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f--~--~~~~~~-~Li--~~WiaeG~i-~~~~~e~~~ 144 (922)
+... .....-.+..||.+ ++.|++.-.- + ...+.. ++. ...+++.+- .+. ..
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~----~~ 339 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR----TH 339 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC----cH
Confidence 6531 12334567899987 5666664322 1 122322 332 223332221 111 12
Q ss_pred HHHHHHHHHHHhhcceec
Q 002432 145 NKLYTLVHELKDSCLLLE 162 (922)
Q Consensus 145 ~~~~~~i~~L~~~~l~~~ 162 (922)
..+.+|+++|.+.+++..
T Consensus 340 ~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 340 TRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHHHHHHHHhcCCeEE
Confidence 334567888999998864
No 100
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=20.34 E-value=2.7e+02 Score=33.53 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCCCccchHHHH
Q 002432 12 LNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENNFHRELGKAY 91 (922)
Q Consensus 12 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~ 91 (922)
++.||+-++|....+..-.-. -.+.+.+...|=+-|+..++-.++...+.+.--..+.- . .+.+.+
T Consensus 194 f~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~-~~~l~d-- 259 (894)
T COG2909 194 FDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------A-ASHLSD-- 259 (894)
T ss_pred CChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------h-HHHHHH--
Confidence 788999999988763322222 35667777778888877777777733233211111110 0 011111
Q ss_pred HHHHHHHhcCCchhHHHHHhhccccCCCchhHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhcceec--ccccceE
Q 002432 92 TAIKLSYDALKGEQLKKIFQLCSLMPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCLLLE--GYSCREF 169 (922)
Q Consensus 92 ~~l~lsY~~L~~~~lk~cfly~~~f~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~l~~~--~~~~~~~ 169 (922)
-...=-+|.||++ +|.=.+-+|+++- |..+|++.-..+ +-+..++++|..+++|-. .+..++|
T Consensus 260 YL~eeVld~Lp~~-l~~FLl~~svl~~--f~~eL~~~Ltg~------------~ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 260 YLVEEVLDRLPPE-LRDFLLQTSVLSR--FNDELCNALTGE------------ENGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHhHHH--hhHHHHHHHhcC------------CcHHHHHHHHHhCCCceeeecCCCcee
Confidence 0111235789998 8998888888832 222444433221 123345899999998752 3467789
Q ss_pred EecHHHHHHHHHHHc
Q 002432 170 SMHDVVHDVAILIAC 184 (922)
Q Consensus 170 ~mhdli~dl~~~~~~ 184 (922)
+.|.++.||-...-.
T Consensus 325 ryH~LFaeFL~~r~~ 339 (894)
T COG2909 325 RYHHLFAEFLRQRLQ 339 (894)
T ss_pred ehhHHHHHHHHhhhc
Confidence 999999999875543
Done!