Query 002432
Match_columns 922
No_of_seqs 458 out of 4097
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 02:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.6E-41 1.2E-45 406.5 30.4 603 206-901 49-723 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-40 1.5E-44 394.1 38.1 174 211-402 8-187 (680)
3 3rgz_A Protein brassinosteroid 100.0 5.5E-40 1.9E-44 396.1 29.0 593 206-899 99-744 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-38 9.1E-43 378.6 39.8 584 192-894 11-621 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-38 9.8E-43 373.2 33.3 522 210-894 14-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.3E-37 7.7E-42 365.5 36.1 530 211-894 16-559 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-37 1.9E-41 362.1 34.8 526 190-873 16-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 5E-36 1.7E-40 354.0 36.6 531 192-873 19-561 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-34 5.8E-39 352.0 40.1 527 190-893 9-558 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1E-34 3.6E-39 353.8 31.9 538 210-922 7-558 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1E-34 3.5E-39 340.5 28.4 501 193-874 15-533 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-34 6.2E-39 336.5 25.2 174 212-402 10-188 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2.1E-33 7.1E-38 329.4 32.8 506 210-895 10-531 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-32 7.5E-37 318.8 31.1 494 228-894 4-509 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-32 2.6E-36 320.9 31.5 523 213-893 37-578 (635)
16 4eco_A Uncharacterized protein 100.0 1.1E-31 3.7E-36 316.0 22.4 186 678-896 433-633 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-30 4.5E-35 310.2 31.9 524 192-872 38-580 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 6.4E-31 2.2E-35 313.5 26.9 167 678-877 673-845 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-31 1.2E-35 306.1 23.6 120 233-362 4-128 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-30 2.4E-34 295.3 30.3 123 259-399 3-128 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-28 6.1E-33 285.7 31.7 146 230-398 32-181 (562)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-29 1.6E-33 290.6 22.7 144 208-361 32-181 (562)
23 4eco_A Uncharacterized protein 100.0 1E-28 3.4E-33 290.7 16.5 442 229-899 81-603 (636)
24 4ecn_A Leucine-rich repeat pro 100.0 6.2E-28 2.1E-32 287.9 19.3 141 247-404 440-613 (876)
25 1jl5_A Outer protein YOPM; leu 99.9 3.6E-27 1.2E-31 264.8 19.8 409 224-895 6-429 (454)
26 1o6v_A Internalin A; bacterial 99.9 1.5E-25 5.3E-30 254.3 28.7 168 206-399 45-212 (466)
27 1o6v_A Internalin A; bacterial 99.9 1.6E-25 5.5E-30 254.2 27.0 147 227-399 44-190 (466)
28 1jl5_A Outer protein YOPM; leu 99.9 3.1E-26 1.1E-30 257.2 18.0 175 651-897 235-410 (454)
29 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-25 7.8E-30 250.4 24.2 118 228-359 41-158 (457)
30 3v47_A TOLL-like receptor 5B a 99.9 4.4E-25 1.5E-29 250.6 22.4 148 232-400 13-168 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 2.3E-24 7.8E-29 244.7 26.1 173 211-402 14-196 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 5.1E-24 1.8E-28 239.4 24.9 345 205-714 40-384 (457)
33 3o6n_A APL1; leucine-rich repe 99.9 3.5E-24 1.2E-28 237.4 22.9 153 226-398 42-198 (390)
34 4fmz_A Internalin; leucine ric 99.9 5.2E-24 1.8E-28 232.3 23.6 147 228-398 43-189 (347)
35 4fmz_A Internalin; leucine ric 99.9 3.9E-23 1.3E-27 225.3 26.1 282 204-588 41-322 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 4.2E-23 1.4E-27 235.5 25.9 147 211-362 15-165 (477)
37 3oja_B Anopheles plasmodium-re 99.9 1.4E-23 4.9E-28 245.6 20.9 152 226-397 48-203 (597)
38 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.8E-27 225.4 25.7 133 254-400 43-179 (390)
39 2id5_A Lingo-1, leucine rich r 99.9 3.8E-22 1.3E-26 227.6 25.8 308 191-588 17-331 (477)
40 2a5y_B CED-4; apoptosis; HET: 99.9 2.4E-24 8.2E-29 247.8 3.2 169 3-187 284-472 (549)
41 3oja_B Anopheles plasmodium-re 99.9 9.8E-22 3.4E-26 229.9 25.2 133 254-400 49-185 (597)
42 2ft3_A Biglycan; proteoglycan, 99.9 6.8E-21 2.3E-25 205.8 22.9 151 230-401 34-187 (332)
43 1xku_A Decorin; proteoglycan, 99.9 2.7E-20 9.3E-25 201.0 25.3 153 230-402 32-187 (330)
44 3ogk_B Coronatine-insensitive 99.9 9.2E-23 3.2E-27 239.9 6.0 64 806-872 461-526 (592)
45 4fcg_A Uncharacterized protein 99.9 6.3E-21 2.1E-25 204.8 19.4 173 206-397 80-264 (328)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-20 5E-25 203.2 21.5 171 208-402 34-209 (332)
47 4fcg_A Uncharacterized protein 99.9 6.2E-21 2.1E-25 204.9 17.9 132 255-401 80-221 (328)
48 1xku_A Decorin; proteoglycan, 99.9 5.2E-20 1.8E-24 198.8 24.8 170 208-400 32-206 (330)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.8E-25 201.7 16.5 174 207-399 50-234 (313)
50 3ogk_B Coronatine-insensitive 99.8 5.6E-22 1.9E-26 233.2 6.3 99 258-358 140-252 (592)
51 2z80_A TOLL-like receptor 2, v 99.8 6.3E-20 2.1E-24 200.1 16.4 175 211-402 35-214 (353)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-19 3.8E-24 193.9 12.9 154 229-399 50-210 (313)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.7E-23 184.1 19.8 181 205-402 30-217 (285)
54 2p1m_B Transport inhibitor res 99.8 2.4E-21 8.3E-26 227.9 -1.0 130 227-359 103-245 (594)
55 2z66_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 188.4 17.3 171 211-398 11-187 (306)
56 2p1m_B Transport inhibitor res 99.8 6.7E-21 2.3E-25 224.2 2.2 100 232-335 46-167 (594)
57 2z66_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 186.4 18.3 195 192-403 14-216 (306)
58 3zyi_A Leucine-rich repeat-con 99.8 1.8E-18 6.1E-23 195.3 20.8 174 209-401 56-233 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 2.3E-18 7.7E-23 193.7 21.5 174 209-401 45-222 (440)
60 3zyj_A Leucine-rich repeat-con 99.8 2.8E-18 9.5E-23 193.0 21.7 190 192-401 50-246 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 192.9 21.2 190 192-401 61-257 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 5E-18 1.7E-22 178.9 19.5 173 210-400 14-191 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-17 8.4E-22 190.3 26.3 256 208-590 41-297 (622)
64 2z80_A TOLL-like receptor 2, v 99.8 2.8E-18 9.4E-23 187.1 15.8 192 193-402 39-238 (353)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.5E-22 191.2 23.3 113 230-362 41-154 (622)
66 2o6q_A Variable lymphocyte rec 99.8 2.1E-17 7.3E-22 172.4 21.2 186 195-398 26-217 (270)
67 1p9a_G Platelet glycoprotein I 99.7 2E-17 6.8E-22 174.0 18.6 181 206-405 9-191 (290)
68 2o6q_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 170.6 19.9 190 207-414 16-211 (270)
69 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-20 7.8E-25 212.1 -5.1 158 229-398 3-182 (461)
70 3o53_A Protein LRIM1, AGAP0063 99.7 2E-19 6.8E-24 192.6 2.4 132 247-399 25-157 (317)
71 2xwt_C Thyrotropin receptor; s 99.7 2.8E-17 9.7E-22 168.1 15.1 196 197-414 23-232 (239)
72 3m19_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 165.9 18.3 175 208-400 15-193 (251)
73 2z62_A TOLL-like receptor 4, v 99.7 4.8E-17 1.6E-21 170.5 16.8 201 195-414 17-230 (276)
74 1h6u_A Internalin H; cell adhe 99.7 8.7E-17 3E-21 170.9 18.6 187 205-416 39-225 (308)
75 2z62_A TOLL-like receptor 4, v 99.7 4.8E-17 1.6E-21 170.5 16.1 175 212-402 12-193 (276)
76 1p9a_G Platelet glycoprotein I 99.7 1E-16 3.5E-21 168.5 17.3 186 193-399 18-208 (290)
77 3o53_A Protein LRIM1, AGAP0063 99.7 5.5E-18 1.9E-22 181.3 7.5 143 208-362 35-182 (317)
78 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-19 8.1E-24 203.8 -4.0 180 206-400 2-213 (461)
79 3rfs_A Internalin B, repeat mo 99.7 2.3E-16 7.9E-21 164.6 18.6 177 204-399 38-218 (272)
80 3sfz_A APAF-1, apoptotic pepti 99.7 6.8E-17 2.3E-21 207.4 16.1 169 2-186 275-452 (1249)
81 1h6u_A Internalin H; cell adhe 99.7 4.6E-16 1.6E-20 165.3 19.5 188 192-404 48-235 (308)
82 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.5E-21 166.7 16.3 175 204-403 43-217 (291)
83 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.8E-21 162.9 14.4 139 218-362 22-169 (239)
84 1vt4_I APAF-1 related killer D 99.7 6.4E-17 2.2E-21 187.6 11.5 142 6-180 286-437 (1221)
85 1wwl_A Monocyte differentiatio 99.7 2.7E-16 9.1E-21 167.8 15.0 162 227-404 93-271 (312)
86 3oja_A Leucine-rich immune mol 99.7 2.5E-17 8.5E-22 186.7 6.3 98 257-362 35-133 (487)
87 3m19_A Variable lymphocyte rec 99.7 1.6E-15 5.5E-20 156.2 18.7 169 190-363 19-193 (251)
88 4ay9_X Follicle-stimulating ho 99.7 4.5E-16 1.5E-20 168.9 14.6 227 652-921 29-256 (350)
89 3oja_A Leucine-rich immune mol 99.6 5.7E-16 2E-20 175.5 13.9 169 207-402 34-207 (487)
90 3rfs_A Internalin B, repeat mo 99.6 3E-15 1E-19 156.2 18.0 182 192-397 48-233 (272)
91 3e6j_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 150.0 16.2 149 209-362 21-172 (229)
92 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.6E-20 174.4 14.7 175 204-403 40-214 (605)
93 1h6t_A Internalin B; cell adhe 99.6 4.3E-15 1.5E-19 156.3 15.3 166 226-416 43-208 (291)
94 1wwl_A Monocyte differentiatio 99.6 3.2E-15 1.1E-19 159.4 14.4 177 206-403 94-291 (312)
95 2o6s_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 148.8 13.3 170 210-404 10-184 (208)
96 4ezg_A Putative uncharacterize 99.6 3.7E-15 1.3E-19 147.0 13.3 146 206-360 43-192 (197)
97 2v9t_B SLIT homolog 2 protein 99.6 5E-15 1.7E-19 148.6 14.5 148 210-362 14-165 (220)
98 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.7E-20 157.3 10.2 172 206-403 18-189 (263)
99 2v70_A SLIT-2, SLIT homolog 2 99.6 6.6E-15 2.3E-19 147.8 14.1 148 210-362 14-166 (220)
100 4ay9_X Follicle-stimulating ho 99.6 8.5E-15 2.9E-19 158.8 15.7 145 213-361 15-166 (350)
101 4ezg_A Putative uncharacterize 99.6 7.7E-15 2.6E-19 144.7 13.4 150 227-399 42-194 (197)
102 2ast_B S-phase kinase-associat 99.6 5.1E-16 1.8E-20 168.0 4.8 144 209-359 49-205 (336)
103 2v9t_B SLIT homolog 2 protein 99.6 1.6E-14 5.5E-19 145.0 14.6 147 232-398 14-164 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-14 8.6E-19 143.5 14.9 148 232-399 14-166 (220)
105 2o6s_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 142.7 14.6 158 194-363 16-179 (208)
106 4glp_A Monocyte differentiatio 99.5 2.5E-14 8.7E-19 152.3 14.3 187 207-413 91-299 (310)
107 2xot_A Amphoterin-induced prot 99.5 1.4E-14 4.8E-19 157.8 11.4 171 210-398 21-201 (361)
108 3e6j_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 142.0 15.1 149 231-400 21-173 (229)
109 1z6t_A APAF-1, apoptotic prote 99.5 3.5E-14 1.2E-18 166.0 15.3 163 5-183 276-449 (591)
110 1xeu_A Internalin C; cellular 99.5 3.5E-14 1.2E-18 146.8 13.5 149 204-363 38-186 (263)
111 4glp_A Monocyte differentiatio 99.5 2.4E-14 8.3E-19 152.5 12.4 174 204-399 114-307 (310)
112 2xot_A Amphoterin-induced prot 99.5 2.8E-14 9.5E-19 155.4 13.0 168 190-362 23-202 (361)
113 1m9s_A Internalin B; cell inva 99.5 2.6E-14 8.8E-19 165.0 13.2 178 213-415 27-204 (605)
114 2ast_B S-phase kinase-associat 99.5 1.8E-15 6.1E-20 163.7 2.8 148 230-396 48-205 (336)
115 2ell_A Acidic leucine-rich nuc 99.5 5.3E-14 1.8E-18 134.8 12.5 136 254-404 22-165 (168)
116 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.8E-18 156.8 18.1 159 208-405 60-226 (571)
117 2ca6_A RAN GTPase-activating p 99.5 5.1E-15 1.7E-19 163.3 2.7 181 207-397 32-255 (386)
118 3cvr_A Invasion plasmid antige 99.5 3.9E-13 1.3E-17 153.2 17.4 168 194-399 68-243 (571)
119 2ell_A Acidic leucine-rich nuc 99.5 2.4E-13 8.1E-18 130.3 11.0 129 207-341 24-163 (168)
120 2wfh_A SLIT homolog 2 protein 99.4 6.4E-13 2.2E-17 130.0 13.6 124 232-362 13-139 (193)
121 3goz_A Leucine-rich repeat-con 99.4 3.7E-14 1.3E-18 154.6 3.4 127 231-362 24-180 (362)
122 1w8a_A SLIT protein; signaling 99.4 6.6E-13 2.3E-17 130.0 11.9 124 232-362 11-139 (192)
123 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.5E-18 128.0 7.6 107 255-362 16-126 (149)
124 4b8c_D Glucose-repressible alc 99.4 3E-13 1E-17 160.3 10.9 155 207-363 173-330 (727)
125 1w8a_A SLIT protein; signaling 99.4 8.4E-13 2.9E-17 129.3 11.8 125 259-399 11-139 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.4 5.3E-13 1.8E-17 128.8 8.8 108 253-362 16-126 (176)
127 3goz_A Leucine-rich repeat-con 99.4 7.2E-14 2.5E-18 152.3 2.7 153 234-399 3-180 (362)
128 2je0_A Acidic leucine-rich nuc 99.4 8.6E-13 2.9E-17 123.5 9.6 121 207-332 17-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.6E-17 125.7 12.9 125 258-398 12-138 (193)
130 2ca6_A RAN GTPase-activating p 99.4 3.1E-13 1E-17 149.0 5.1 183 206-400 59-288 (386)
131 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.4E-17 124.9 8.7 130 227-362 17-153 (176)
132 4b8c_D Glucose-repressible alc 99.3 3E-13 1E-17 160.3 3.5 132 227-363 222-355 (727)
133 2o6r_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 118.8 13.9 106 256-362 28-137 (177)
134 2o6r_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 117.8 13.3 124 209-336 9-136 (177)
135 1dce_A Protein (RAB geranylger 99.3 1.3E-11 4.6E-16 141.5 12.7 124 256-393 441-567 (567)
136 1dce_A Protein (RAB geranylger 99.3 1.4E-11 4.8E-16 141.3 12.6 188 208-413 350-565 (567)
137 1ds9_A Outer arm dynein; leuci 99.2 3.1E-13 1.1E-17 133.3 -2.0 114 246-363 39-154 (198)
138 2r9u_A Variable lymphocyte rec 99.2 4.9E-11 1.7E-15 114.3 11.2 101 259-362 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.2 5.7E-11 2E-15 113.4 11.0 102 258-362 11-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.2 6.3E-13 2.2E-17 131.1 -3.9 147 208-362 24-185 (198)
141 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 108.8 10.8 104 232-342 15-122 (174)
142 3sb4_A Hypothetical leucine ri 99.0 2.2E-10 7.7E-15 122.8 8.0 157 228-404 100-315 (329)
143 3g39_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 105.6 10.5 99 231-335 11-113 (170)
144 3sb4_A Hypothetical leucine ri 99.0 3E-09 1E-13 113.9 13.1 101 806-913 224-326 (329)
145 4fdw_A Leucine rich hypothetic 98.8 8.2E-08 2.8E-12 104.9 18.6 195 649-889 176-377 (401)
146 2ifg_A High affinity nerve gro 98.8 9.3E-09 3.2E-13 111.2 10.4 100 260-362 12-116 (347)
147 3un9_A NLR family member X1; l 98.8 7.8E-10 2.7E-14 119.8 0.9 154 206-362 71-252 (372)
148 4fdw_A Leucine rich hypothetic 98.7 4.2E-07 1.4E-11 99.3 20.6 217 654-921 158-380 (401)
149 2ifg_A High affinity nerve gro 98.7 3.6E-08 1.2E-12 106.5 9.2 97 234-335 13-114 (347)
150 3un9_A NLR family member X1; l 98.6 3.7E-09 1.3E-13 114.5 -1.6 160 228-400 71-253 (372)
151 4fs7_A Uncharacterized protein 98.2 1.8E-05 6E-10 86.8 16.3 98 805-912 294-392 (394)
152 2ra8_A Uncharacterized protein 98.2 1.1E-06 3.7E-11 94.1 6.3 142 699-872 167-320 (362)
153 4fs7_A Uncharacterized protein 98.2 8.5E-05 2.9E-09 81.3 20.4 122 227-358 69-194 (394)
154 2ra8_A Uncharacterized protein 98.1 1.5E-06 5.3E-11 92.9 5.7 178 207-398 107-319 (362)
155 3e4g_A ATP synthase subunit S, 98.1 1.8E-06 6.3E-11 80.6 4.4 66 653-720 61-130 (176)
156 3e4g_A ATP synthase subunit S, 98.0 3.6E-06 1.2E-10 78.6 5.1 93 246-339 52-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.0 4.1E-06 1.4E-10 80.6 5.1 111 251-362 31-164 (185)
158 3rw6_A Nuclear RNA export fact 97.8 2.3E-05 7.8E-10 79.2 6.3 78 253-330 167-257 (267)
159 4gt6_A Cell surface protein; l 97.7 0.00095 3.2E-08 72.9 18.9 60 805-869 308-367 (394)
160 1io0_A Tropomodulin; LRR prote 97.7 3.2E-05 1.1E-09 74.3 6.2 109 227-335 34-162 (185)
161 3rw6_A Nuclear RNA export fact 97.6 1.4E-05 4.9E-10 80.7 1.7 94 261-355 148-257 (267)
162 4gt6_A Cell surface protein; l 97.6 0.0095 3.2E-07 64.8 24.1 144 230-396 65-215 (394)
163 4h09_A Hypothetical leucine ri 97.5 0.0079 2.7E-07 65.1 21.3 137 735-904 216-353 (379)
164 4h09_A Hypothetical leucine ri 97.3 0.022 7.5E-07 61.6 22.7 138 700-877 213-350 (379)
165 3rfe_A Platelet glycoprotein I 95.1 0.018 6.1E-07 51.0 4.3 55 812-871 12-67 (130)
166 3rfe_A Platelet glycoprotein I 94.9 0.031 1E-06 49.5 5.5 51 260-312 12-66 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.2 0.05 1.7E-06 51.6 5.3 82 253-334 38-136 (197)
168 2qen_A Walker-type ATPase; unk 93.3 0.91 3.1E-05 47.8 14.2 146 5-178 196-347 (350)
169 2fna_A Conserved hypothetical 92.2 1.2 4E-05 47.1 13.1 145 5-178 202-355 (357)
170 1pgv_A TMD-1, tropomodulin TMD 91.9 0.37 1.3E-05 45.6 7.6 106 229-334 41-167 (197)
171 1w5s_A Origin recognition comp 83.0 3.8 0.00013 44.2 9.8 135 7-163 210-371 (412)
172 1hqc_A RUVB; extended AAA-ATPa 68.1 9.5 0.00032 39.3 7.4 70 5-75 161-238 (324)
173 2qby_B CDC6 homolog 3, cell di 56.9 1.2E+02 0.0041 31.6 13.9 135 5-162 190-338 (384)
174 1njg_A DNA polymerase III subu 50.6 20 0.00068 34.6 5.9 53 5-60 178-232 (250)
175 2v1u_A Cell division control p 48.1 1.1E+02 0.0039 31.7 11.9 135 5-162 194-350 (387)
176 2vda_B Maltoporin; sugar trans 31.3 21 0.00073 20.1 1.3 19 44-62 7-25 (28)
177 2qby_A CDC6 homolog 1, cell di 21.1 2.2E+02 0.0074 29.4 8.3 135 5-162 190-347 (386)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-41 Score=406.46 Aligned_cols=603 Identities=16% Similarity=0.039 Sum_probs=393.1
Q ss_pred cCcceEEEeecCCCCC----CCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCch--hhhc
Q 002432 206 LKKCYAISWIDSSGGE----LPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPS--SIDL 277 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~ 277 (922)
..+++.|+++++.+.. +++.+ .++.|+.++++.+... .+|.. |+++++||+|+|++|.+. .+|. .+++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~---~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN---GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE---ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC---CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhC
Confidence 3578889998887743 45433 7888888888887543 34454 488999999999999887 4677 8899
Q ss_pred cCCCCEEEccCCCCCC--cccc-CCCCcCCEEEeecCCCccc-chh---hcCCCCCCEEeccCCCCCCccCcchhCCCCC
Q 002432 278 LVNLQTLCLDYSTLGD--ITII-GKLKNLEILSLIESDIVEF-PEE---LGKLTKLRLLDLTNCFHLKVIAPNVIASFTR 350 (922)
Q Consensus 278 L~~L~~L~L~~~~l~~--p~~i-~~L~~L~~L~L~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~ 350 (922)
+++|++|++++|.+.. |..+ .++++|++|++++|+++.. |.. +.++++|++|++++|. +....+ ++++++
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~ 201 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVN 201 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTT
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCc
Confidence 9999999999998765 4443 7899999999999988854 444 7889999999999886 544433 478899
Q ss_pred CCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccc-cccccceeEEEEccCCCCCCccc
Q 002432 351 LEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGF-FVRELERFKILIGDRSFEPPVIL 428 (922)
Q Consensus 351 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~~~~~~~~~~~~~~l 428 (922)
|++|++++|.+.. .+..++++++|++|++++|... .+|..+ .+++|+.|.+..... ....
T Consensus 202 L~~L~Ls~n~l~~--------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~-- 263 (768)
T 3rgz_A 202 LEFLDVSSNNFST--------------GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPI-- 263 (768)
T ss_dssp CCEEECCSSCCCS--------------CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC--EESC--
T ss_pred CCEEECcCCcCCC--------------CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc--cCcc--
Confidence 9999999888763 2333888889999999988765 334433 566666665432211 0000
Q ss_pred cccccccccccccccccccceeeEecccccchh-hhcc---cCCcceeEEeeccccCccccccccccccccCCcEEEEec
Q 002432 429 SKDWFRISRSHFLILDHQSLRMLKLKLNWKTIC-LRKL---QGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQN 504 (922)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~ 504 (922)
.. .....++.+++..+. +. .+|. ..+++|+.|++.++......+..+ +.+++|++|++++
T Consensus 264 -~~-----------~~l~~L~~L~L~~n~--l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 264 -PP-----------LPLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSS 327 (768)
T ss_dssp -CC-----------CCCTTCCEEECCSSE--EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG--GGCTTCCEEECCS
T ss_pred -Cc-----------cccCCCCEEECcCCc--cCCccCHHHHhhcCcCCEEECcCCcCCCccchHH--hcCCCccEEECCC
Confidence 00 011256666665442 22 1111 113778888888765444444433 5678888888887
Q ss_pred CCCceEeecCcccccCccccccccccccccccccccccccccccccc-CcCeeEEecCCCccccccccccccCCCccEEE
Q 002432 505 NPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFS-ELRTMKVENCDELSNIFVLSTTKCLPSLQRIA 583 (922)
Q Consensus 505 ~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 583 (922)
+.....++. .....+++|+.|+++++.-...++.. ...++ +|+.|++.+|.--..+++......+++|++|+
T Consensus 328 n~l~~~ip~----~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 328 NNFSGELPM----DTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp SEEEEECCH----HHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred CcccCcCCH----HHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 743223221 01345677888888877533233322 34455 78888888773222222211112267788888
Q ss_pred EcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeeccc
Q 002432 584 VIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEI 663 (922)
Q Consensus 584 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 663 (922)
+++|.....++.. ...+++|+.|+++++.--.. .+..+..+++|+.|++++|
T Consensus 401 L~~n~l~~~~p~~---------------l~~l~~L~~L~Ls~N~l~~~-------------~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 401 LQNNGFTGKIPPT---------------LSNCSELVSLHLSFNYLSGT-------------IPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CCSSEEEEECCGG---------------GGGCTTCCEEECCSSEEESC-------------CCGGGGGCTTCCEEECCSS
T ss_pred CCCCccccccCHH---------------HhcCCCCCEEECcCCcccCc-------------ccHHHhcCCCCCEEECCCC
Confidence 8887533333321 24578888888888743222 2234457889999999999
Q ss_pred ceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeec
Q 002432 664 NVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISL 743 (922)
Q Consensus 664 ~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l 743 (922)
.++...+..+ ..+++|++|++++|.-...+| ..+..+++|++|++++|.-...++ .....+++|++|++
T Consensus 453 ~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 453 MLEGEIPQEL-MYVKTLETLILDFNDLTGEIP--SGLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKL 521 (768)
T ss_dssp CCCSCCCGGG-GGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEEC
T ss_pred cccCcCCHHH-cCCCCceEEEecCCcccCcCC--HHHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEEC
Confidence 7775433322 357899999999964433443 347889999999999985333432 12335789999999
Q ss_pred ccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccc-------cccC---------------------
Q 002432 744 CHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKK-------QLHV--------------------- 795 (922)
Q Consensus 744 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~-------~~~~--------------------- 795 (922)
++|.....+|..+. .+++|+.|++++|+-...+|............ ...+
T Consensus 522 ~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 522 SNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp CSSCCEEECCGGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred CCCcccCcCCHHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 99977767776665 89999999999986666777653222111000 0000
Q ss_pred ----------------CCCC----cceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc-ccchhH
Q 002432 796 ----------------PKQP----FFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA-SVPIGL 854 (922)
Q Consensus 796 ----------------~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~-~lp~~~ 854 (922)
.... ....+..+++|+.|++++|++....|.. .+.+++|+.|++++|.+. .+|..+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE---IGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG---GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH---HhccccCCEEeCcCCccCCCCChHH
Confidence 0000 0112345678888888888887666655 347788888888887776 666654
Q ss_pred HhhcCCCCeEEEecccceEEecCC-ccccccceEeccccccccccccC
Q 002432 855 LEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLNDLEYLWIP 901 (922)
Q Consensus 855 l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~L~~l~~~ 901 (922)
+++++|+.|++++|.+.+..|.. +.+++|++|++++|+--..+|..
T Consensus 677 -~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 677 -GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp -GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred -hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 68888888888888887655543 55788888888877666677754
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-40 Score=394.12 Aligned_cols=174 Identities=21% Similarity=0.250 Sum_probs=106.0
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 289 (922)
.++.+++.+..+|.... +++++|++++|... .++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eeECCCCCccccccccC-CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 45555555666665432 56677777766654 45555556677777777777766654 456666777777777777
Q ss_pred CCCC-c-cccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 290 TLGD-I-TIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
.+.. | ..|+++++|++|++++|+++.+| ..++++++|++|++++|. +..+++..++++++|++|++++|.+..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 159 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQA--- 159 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCC---
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccc---
Confidence 6666 4 35667777777777777666654 346667777777777664 444444446667777777777666542
Q ss_pred ccCCcccccccCccc--CCCCCCCCEEEeeecCCCCCC
Q 002432 367 DEGSSSKKSKASLDE--LMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~ 402 (922)
..... ...+++|+.|++++|....++
T Consensus 160 ----------~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 160 ----------LKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp ----------BCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ----------cCHHHhhccccccccEEECCCCcccccC
Confidence 11111 123456667777666554443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-40 Score=396.14 Aligned_cols=593 Identities=16% Similarity=0.052 Sum_probs=299.4
Q ss_pred cCcceEEEeecCCCC-CCCC--CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chh---hhc
Q 002432 206 LKKCYAISWIDSSGG-ELPE--GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSS---IDL 277 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~-~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~---i~~ 277 (922)
.+++++|++++|.+. .+|. .+ .+++|++|++++|.... .+|..++.++++|++|++++|.+... |.. +++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 345555555555542 2333 22 55555555555554332 34433334555556666655555532 333 455
Q ss_pred cCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEcc
Q 002432 278 LVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357 (922)
Q Consensus 278 L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~ 357 (922)
+++|++|++++|.+.....+..+++|++|++++|+++..+..++++++|++|++++|...+.+|.. ++++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECC
Confidence 555666666555554422235556666666666655533223555666666666655422233333 5556666666666
Q ss_pred CCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC-CCCccc-c-ccccceeEEEEccCCCCCCccccccccc
Q 002432 358 NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN-ALPEGF-F-VRELERFKILIGDRSFEPPVILSKDWFR 434 (922)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~l~~~~~~~~~~~~~~l~~~~~~ 434 (922)
+|.+.+ .. ... .+++|++|++++|... .+|..+ . +++|+.|.+...... +
T Consensus 256 ~n~l~~-------------~~-~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~------------~ 308 (768)
T 3rgz_A 256 SNQFVG-------------PI-PPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY------------G 308 (768)
T ss_dssp SSCCEE-------------SC-CCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE------------E
T ss_pred CCcccC-------------cc-Ccc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC------------C
Confidence 555442 11 111 4555666666555533 444433 1 244444443211000 0
Q ss_pred cccccccccccccceeeEeccccc--chhhhcccCCcceeEEeeccccCcccccccccccccc-CCcEEEEecCCCceEe
Q 002432 435 ISRSHFLILDHQSLRMLKLKLNWK--TICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFS-QLKHLLVQNNPDLLFI 511 (922)
Q Consensus 435 ~~~~~~~~~~~~~l~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~-~L~~L~l~~~~~l~~i 511 (922)
..+..+.-++ .++.+++..+.- .+.......+++|+.|++.++......+..+ ..++ +|++|+++++.....+
T Consensus 309 ~~p~~~~~l~--~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 309 AVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp CCCGGGGGCT--TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEEC
T ss_pred ccchHHhcCC--CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCc
Confidence 0000011112 444444443311 1111012234555555555543222222222 2233 5555555555321111
Q ss_pred ecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432 512 VDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591 (922)
Q Consensus 512 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 591 (922)
+ .......+++|+.|+++++.-...++.. ...+++|+.|++.+| .+....+ ..+..+++|+.|++++|....
T Consensus 385 ~---~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 385 L---PNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp C---TTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCCS
T ss_pred C---hhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCC-cccCccc-HHHhcCCCCCEEECCCCcccC
Confidence 1 1111112455666666555432222221 344556666666655 2332222 234555666666666554222
Q ss_pred hhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccC
Q 002432 592 EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHN 671 (922)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 671 (922)
.++.. ...+++|+.|+++++.-... .+..+..+++|+.|++++|.++...+.
T Consensus 457 ~~p~~---------------~~~l~~L~~L~L~~N~l~~~-------------~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 457 EIPQE---------------LMYVKTLETLILDFNDLTGE-------------IPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCCGG---------------GGGCTTCCEEECCSSCCCSC-------------CCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cCCHH---------------HcCCCCceEEEecCCcccCc-------------CCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 22211 12455666666665543222 122334566777777777765533222
Q ss_pred CCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC--------------------
Q 002432 672 QTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP-------------------- 731 (922)
Q Consensus 672 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~-------------------- 731 (922)
.+ ..+++|++|++++|.-...+| ..+..+++|+.|++++|+-...++..-+......
T Consensus 509 ~~-~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 509 WI-GRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GG-GGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred HH-hcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 21 245667777777653333333 2356667777777776643334432111100000
Q ss_pred ------------------cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccc
Q 002432 732 ------------------CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQL 793 (922)
Q Consensus 732 ------------------~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~ 793 (922)
...++.++.+++....--..++..+ ..+++|+.|++++|.--..+|..
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~------------ 651 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE------------ 651 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG------------
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHH------------
Confidence 0000001111111100001112222 25788999999886444466554
Q ss_pred cCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc-ccchhHHhhcCCCCeEEEecccce
Q 002432 794 HVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA-SVPIGLLEKFHGLENLNLSFCSYK 872 (922)
Q Consensus 794 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~-~lp~~~l~~l~~L~~L~l~~c~l~ 872 (922)
++.+++|+.|++++|.+....|.. ++.+++|+.|++++|.+. .+|.. +..+++|++|++++|++.
T Consensus 652 ----------l~~l~~L~~L~Ls~N~l~g~ip~~---l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 652 ----------IGSMPYLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ----------GGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEE
T ss_pred ----------HhccccCCEEeCcCCccCCCCChH---HhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCccc
Confidence 378999999999999998776766 448899999999998887 56655 479999999999999999
Q ss_pred EEecCCccccccceEeccccccccccc
Q 002432 873 ELFSNGGQVHLIKKLELICLNDLEYLW 899 (922)
Q Consensus 873 ~l~~~~~~~~sL~~L~i~~c~~L~~l~ 899 (922)
+..|..+.+.++....+.+||.+=..|
T Consensus 718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 718 GPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred ccCCCchhhccCCHHHhcCCchhcCCC
Confidence 998988888888888888988764433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-38 Score=378.64 Aligned_cols=584 Identities=16% Similarity=0.113 Sum_probs=372.9
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|... .++...|+++++||+|++++|.+.
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccC
Confidence 34445555664 4568999999999999888764 3 8999999999999876 566666799999999999999999
Q ss_pred cCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432 270 SLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVI 345 (922)
Q Consensus 270 ~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l 345 (922)
.+|. .|+++++|++|++++|.+.. +..|+++++|++|++++|.++.. |..++++++|++|++++|. +..+++..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHh
Confidence 9987 69999999999999999987 47899999999999999998865 5568999999999999986 777776545
Q ss_pred C--CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC-----CccccccccceeEEEEc
Q 002432 346 A--SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL-----PEGFFVRELERFKILIG 418 (922)
Q Consensus 346 ~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~l~~~~~ 418 (922)
+ ++++|++|++++|.+.. ..+..+..+++|+.|++.++..... +..+...
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~---------- 222 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKE-------------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT---------- 222 (680)
T ss_dssp GGGTTCEESEEECTTCCCCC-------------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS----------
T ss_pred hccccccccEEECCCCcccc-------------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc----------
Confidence 4 56899999999998774 3446677788888888776543200 0000111
Q ss_pred cCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCC-----cceeEEeeccccCcccccccccccc
Q 002432 419 DRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI-----RKVEYLCLDKFQGVKNILFELDTQG 493 (922)
Q Consensus 419 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~ 493 (922)
.++.+.+..+ .+....+.++ ++|+.|+++++......+..+ ..
T Consensus 223 ----------------------------~L~~L~L~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~ 270 (680)
T 1ziw_A 223 ----------------------------SIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AW 270 (680)
T ss_dssp ----------------------------CCCEEECTTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TT
T ss_pred ----------------------------cccEEEccCC--cccccChhHhhccCcCCCCEEECCCCCcCccCcccc--cC
Confidence 3333333322 1111112222 337777777664333222222 46
Q ss_pred ccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccc-----cccc-cccccccccCcCeeEEecCCCcccc
Q 002432 494 FSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLK-----RICV-DRLSTESFSELRTMKVENCDELSNI 567 (922)
Q Consensus 494 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~ 567 (922)
+++|++|+++++......+ .....+++|+.|+++++..-. .++. .......+++|+.|++.++ .+..+
T Consensus 271 l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~ 344 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGI 344 (680)
T ss_dssp CTTCCEEECCSCCBSEECT-----TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCC
T ss_pred cccccEeeCCCCccCccCh-----hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCC
Confidence 7778888887774322211 123456777777776532111 1110 1113455777888888777 45544
Q ss_pred ccccccccCCCccEEEEccccc-chhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcc
Q 002432 568 FVLSTTKCLPSLQRIAVIKCNK-MKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLF 646 (922)
Q Consensus 568 ~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~ 646 (922)
+ ...+..+++|++|++++|.. +..++..... ....++|+.|+++++.-- .+. .
T Consensus 345 ~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~------------~~~~~~L~~L~L~~n~l~-~~~------------~ 398 (680)
T 1ziw_A 345 K-SNMFTGLINLKYLSLSNSFTSLRTLTNETFV------------SLAHSPLHILNLTKNKIS-KIE------------S 398 (680)
T ss_dssp C-TTTTTTCTTCCEEECTTCBSCCCEECTTTTG------------GGTTSCCCEEECTTSCCC-EEC------------T
T ss_pred C-hhHhccccCCcEEECCCCchhhhhcchhhhc------------ccccCcCceEECCCCCCC-eEC------------h
Confidence 2 24556778888888877641 2221111000 011256777777766422 211 1
Q ss_pred cccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCC
Q 002432 647 NGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGP 726 (922)
Q Consensus 647 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 726 (922)
..+..+++|+.|++++|.+...........+++|++|++++|. +..+++ ..+..+++|++|++++|. +..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~---- 471 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR-NSFALVPSLQRLMLRRVA-LKNVDS---- 471 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCT-TTTTTCTTCCEEECTTSC-CBCTTC----
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeCh-hhhhcCcccccchhcccc-cccccc----
Confidence 2234567788888888876643332233456778888888753 444432 346677788888887753 221100
Q ss_pred CCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeecc
Q 002432 727 GQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKI 806 (922)
Q Consensus 727 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (922)
....+..+++|+.|++++|. ++.++.... ..+++|++|++++| +++.++... ... .....+..
T Consensus 472 -~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~------------~~~-~~~~~~~~ 534 (680)
T 1ziw_A 472 -SPSPFQPLRNLTILDLSNNN-IANINDDML-EGLEKLEILDLQHN-NLARLWKHA------------NPG-GPIYFLKG 534 (680)
T ss_dssp -SSCTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCGGGGSTT------------STT-SCCCTTTT
T ss_pred -CCcccccCCCCCEEECCCCC-CCcCChhhh-ccccccCEEeCCCC-Cccccchhh------------ccC-CcchhhcC
Confidence 01123346778888887753 445544321 26777888888775 565553221 000 00012356
Q ss_pred ccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--ccccc
Q 002432 807 FPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QVHLI 884 (922)
Q Consensus 807 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~~sL 884 (922)
+++|++|++++|++..+.++.|. .+++|+.|++++|.++.+|.+.+.++++|+.|++++|.+..+++... .+++|
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFK---DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred CCCCCEEECCCCCCCCCCHHHcc---cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 77888888888877766555443 67788888888888888887777778888888888887777765432 36778
Q ss_pred ceEecccccc
Q 002432 885 KKLELICLND 894 (922)
Q Consensus 885 ~~L~i~~c~~ 894 (922)
+.|+++++|-
T Consensus 612 ~~l~l~~N~~ 621 (680)
T 1ziw_A 612 TELDMRFNPF 621 (680)
T ss_dssp SEEECTTCCC
T ss_pred CEEEccCCCc
Confidence 8888876654
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-38 Score=373.15 Aligned_cols=522 Identities=16% Similarity=0.167 Sum_probs=292.9
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 288 (922)
++++.+++.+..+|.... +++++|++++|... .++...|.++++||+|++++|.+..+ |..|+++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcC---EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 356666666666665442 66777777777655 45555567777777777777777765 45677777777777777
Q ss_pred CCCCC--ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCC--ccCcchhCCCCCCCEEEccCCcccc
Q 002432 289 STLGD--ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLK--VIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|.+.. |..|+++++|++|++++|+++.+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee
Confidence 77665 566777777777777777777665 457777777777777765 44 34554 7777777777777776653
Q ss_pred cccccCCcccccccCcccCCCCCC----CCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPR----LTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH 439 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 439 (922)
..+..++.+++ +.+|++++|....++...
T Consensus 168 -------------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~---------------------------------- 200 (606)
T 3vq2_A 168 -------------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA---------------------------------- 200 (606)
T ss_dssp -------------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT----------------------------------
T ss_pred -------------cChhhhhhhhccccccceeeccCCCcceeCccc----------------------------------
Confidence 22233333333 336777666655444321
Q ss_pred ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccc-cccccccccccCCcEEEEecC--CCceEeecCcc
Q 002432 440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKN-ILFELDTQGFSQLKHLLVQNN--PDLLFIVDSRE 516 (922)
Q Consensus 440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~l~~L~~L~l~~~--~~l~~i~~~~~ 516 (922)
+.. .+|+.|++.++..... .+..+ +.+++|+.+.+... .....+.
T Consensus 201 ---~~~-----------------------~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~l~---- 248 (606)
T 3vq2_A 201 ---FQG-----------------------IKLHELTLRGNFNSSNIMKTCL--QNLAGLHVHRLILGEFKDERNLE---- 248 (606)
T ss_dssp ---TTT-----------------------CEEEEEEEESCCSCHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCS----
T ss_pred ---ccC-----------------------ceeeeeeccCCccchhHHHHHh--ccccccccccccccccccCCccc----
Confidence 000 1222222222211100 00011 22333333333211 0000000
Q ss_pred cccCcccc-----cccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccch
Q 002432 517 IVDCDAFP-----LLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMK 591 (922)
Q Consensus 517 ~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 591 (922)
......+. .++.+.+.....+..... ....+++|+.|++.++ .+..++ .+..+++|++|++++|.. +
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~-~~~~l~---~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV---KFHCLANVSAMSLAGV-SIKYLE---DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG---SCGGGTTCSEEEEESC-CCCCCC---CCCTTCCCSEEEEESCCC-S
T ss_pred ccChHHhhhhhhccHhheecccccccccccc---ccccCCCCCEEEecCc-cchhhh---hccccccCCEEEcccccC-c
Confidence 00011122 222333322333222211 1455667777777766 334442 445666777777777653 4
Q ss_pred hhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeecc-
Q 002432 592 EIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWH- 670 (922)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~- 670 (922)
.++. . .+++|+.|+++++..+..+. +..+++|+.|++++|.++.+..
T Consensus 321 ~lp~----------------~-~l~~L~~L~l~~n~~~~~~~---------------~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 321 QFPT----------------L-DLPFLKSLTLTMNKGSISFK---------------KVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp SCCC----------------C-CCSSCCEEEEESCSSCEECC---------------CCCCTTCCEEECCSSCEEEEEEC
T ss_pred cccc----------------C-CCCccceeeccCCcCccchh---------------hccCCCCCEEECcCCccCCCcch
Confidence 3331 1 45667777776665444321 1246777777777776665421
Q ss_pred CCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCcc
Q 002432 671 NQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELT 750 (922)
Q Consensus 671 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 750 (922)
......+++|++|++++|. ++.++ ..+..+++|++|++++|. +..+... .....+++|++|++++|....
T Consensus 369 ~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~------~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHST-LKRVTEF------SAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp CHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSE-EESTTTT------TTTTTCTTCCEEECTTSCCEE
T ss_pred hhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCc-cCCccCh------hhhhccccCCEEECcCCCCCc
Confidence 1111346777777777753 55554 335667777777777752 2222110 112246777777777776544
Q ss_pred ccCCCcCcCCCCCccEEEEecCCCccc--cccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCC
Q 002432 751 CLYPGLHTSEWPELKKLEVFSCDKLNT--FASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDF 828 (922)
Q Consensus 751 ~l~~~~~~~~l~~L~~L~l~~c~~L~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 828 (922)
..+..+. .+++|++|++++| ++.. +|.. +..+++|++|++++|.+....+..+
T Consensus 439 ~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~----------------------~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 439 DFDGIFL--GLTSLNTLKMAGN-SFKDNTLSNV----------------------FANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp CCTTTTT--TCTTCCEEECTTC-EEGGGEECSC----------------------CTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhc--CCCCCCEEECCCC-cCCCcchHHh----------------------hccCCCCCEEECCCCcCCccChhhh
Confidence 4444443 6777777777776 3332 2322 3557777777777777776666554
Q ss_pred CCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcccc-ccceEecccccc
Q 002432 829 PQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVH-LIKKLELICLND 894 (922)
Q Consensus 829 ~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~-sL~~L~i~~c~~ 894 (922)
. .+++|++|++++|.+..++...+.++++|++|++++|.+..+++....++ +|+.|+++++|-
T Consensus 494 ~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 494 D---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp T---TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred c---ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 3 66777777777777777655555677777777777777777766544443 577777776554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-37 Score=365.50 Aligned_cols=530 Identities=18% Similarity=0.187 Sum_probs=270.5
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 289 (922)
+++..+..+..+|... -..+++|++++|.+. .++...|.++++||+|++++|.+..+ |..|+++++|++|++++|
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFNVLP---TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTCCCS---EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCCccC---cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 4455555555555543 135677777766654 45444456777777777777766654 556677777777777777
Q ss_pred CCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 290 TLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 290 ~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
.+.. |..|+++++|++|++++|+++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence 7665 45667777777777777766665 4456677777777777764 555432224456777777777766553
Q ss_pred ccCCcccccccCcccCCCCCCCC--EEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccc
Q 002432 367 DEGSSSKKSKASLDELMPLPRLT--TLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 444 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 444 (922)
..+..++.+++|+ .|++++|....++... +.
T Consensus 168 ----------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-------------------------------------~~ 200 (606)
T 3t6q_A 168 ----------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-------------------------------------FD 200 (606)
T ss_dssp ----------ECHHHHHTTTTCCSEEEECTTCCCCEECTTT-------------------------------------TT
T ss_pred ----------cChhhhhhhcccceeEEecCCCccCccChhH-------------------------------------hh
Confidence 2234455566666 5666655544333221 00
Q ss_pred cccceeeEecccccchhhhcccCC--cceeEEeeccccCccc--cccccccccccCCcEEEEecCCCceEeecCcccccC
Q 002432 445 HQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKN--ILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDC 520 (922)
Q Consensus 445 ~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 520 (922)
...++.+++..+. .+... ..++ ..++.+.+..+..... +.... ...+.
T Consensus 201 ~~~L~~L~l~~~~-~~~~~-~~~l~~~~l~~l~~~~~~~~~~~~i~~~~-~~~l~------------------------- 252 (606)
T 3t6q_A 201 SAVFQSLNFGGTQ-NLLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPAV-FEGLC------------------------- 252 (606)
T ss_dssp TCEEEEEECTTCS-CHHHH-HHHTTTCEEEEEECCCCTTSCCCCCCGGG-GGGGG-------------------------
T ss_pred hccccccccCCch-hHHHH-hhhccccchhheechhhccccccccChhH-hchhh-------------------------
Confidence 0012222222110 00000 0000 1122222222111100 00000 00111
Q ss_pred cccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCC
Q 002432 521 DAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEE 600 (922)
Q Consensus 521 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 600 (922)
-.+|+.|+++++. +..++.. ....+++|+.|++.++ .++.++. .+..+++|++|++++|. ++.++...
T Consensus 253 --~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n-~l~~lp~--~l~~l~~L~~L~l~~n~-l~~~~~~~--- 320 (606)
T 3t6q_A 253 --EMSVESINLQKHY-FFNISSN--TFHCFSGLQELDLTAT-HLSELPS--GLVGLSTLKKLVLSANK-FENLCQIS--- 320 (606)
T ss_dssp --GSEEEEEECTTCC-CSSCCTT--TTTTCTTCSEEECTTS-CCSCCCS--SCCSCTTCCEEECTTCC-CSBGGGGC---
T ss_pred --cCceeEEEeecCc-cCccCHH--HhccccCCCEEeccCC-ccCCCCh--hhcccccCCEEECccCC-cCcCchhh---
Confidence 0134444444432 2222111 1334556666666655 3444422 34455666666666543 22222111
Q ss_pred CCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeecc-CCCcccccC
Q 002432 601 PDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWH-NQTPCCFQR 679 (922)
Q Consensus 601 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~ 679 (922)
...+++|+.|.++++.....++. ..+..+++|+.|++++|.++.+.. ......+++
T Consensus 321 -----------~~~l~~L~~L~l~~n~~~~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 321 -----------ASNFPSLTHLSIKGNTKRLELGT------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp -----------GGGCTTCSEEECCSCSSCCBCCS------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred -----------hhccCcCCEEECCCCCcccccch------------hhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 12455666666665543322221 112346667777777776655431 111234567
Q ss_pred ccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcC
Q 002432 680 LTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTS 759 (922)
Q Consensus 680 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 759 (922)
|++|++++| .+..+++ ..+..+++|++|++++| .+....... ....+++|++|++++|..-...+..+.
T Consensus 378 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~-- 446 (606)
T 3t6q_A 378 LQSLNLSYN-EPLSLKT-EAFKECPQLELLDLAFT-RLKVKDAQS------PFQNLHLLKVLNLSHSLLDISSEQLFD-- 446 (606)
T ss_dssp CCEEECCSC-SCEEECT-TTTTTCTTCSEEECTTC-CEECCTTCC------TTTTCTTCCEEECTTCCCBTTCTTTTT--
T ss_pred CCEEECCCC-cCCcCCH-HHhcCCccCCeEECCCC-cCCCcccch------hhhCcccCCEEECCCCccCCcCHHHHh--
Confidence 777777764 3444322 33566677777777665 222221111 122356677777776643333333333
Q ss_pred CCCCccEEEEecCCCccc--cccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCc
Q 002432 760 EWPELKKLEVFSCDKLNT--FASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSL 837 (922)
Q Consensus 760 ~l~~L~~L~l~~c~~L~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL 837 (922)
.+++|++|++++|+ +.. ++.. ..+..+++|++|++++|.+..+.+..+. .+++|
T Consensus 447 ~l~~L~~L~L~~n~-l~~~~~~~~--------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L 502 (606)
T 3t6q_A 447 GLPALQHLNLQGNH-FPKGNIQKT--------------------NSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCB-CGGGEECSS--------------------CGGGGCTTCCEEECTTSCCCEECTTTTT---TCTTC
T ss_pred CCCCCCEEECCCCC-CCccccccc--------------------hhhccCCCccEEECCCCccCccChhhhc---cccCC
Confidence 56777777777653 322 1110 1234567777777777776666555543 56677
Q ss_pred cEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCC-ccccccceEecccccc
Q 002432 838 KDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLND 894 (922)
Q Consensus 838 ~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~ 894 (922)
+.|++++|.+..++...+..+++| .|++++|.+..+++.. ..+++|+.|++++||-
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 777777777766665556667777 7777777666665543 3466777777766553
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.6e-37 Score=362.12 Aligned_cols=526 Identities=17% Similarity=0.187 Sum_probs=351.2
Q ss_pred EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432 190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ 267 (922)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 267 (922)
+...+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|... .++...|.++++||+|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCc
Confidence 3344556666665 5678999999999999888763 3 9999999999999876 6766667999999999999999
Q ss_pred CccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCc--ccchhhcCCCCCCEEeccCCCCCCccCc
Q 002432 268 LFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIV--EFPEELGKLTKLRLLDLTNCFHLKVIAP 342 (922)
Q Consensus 268 i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 342 (922)
+..+ |..|+++++|++|++++|.+.. + ..++++++|++|++++|.++ .+|..++++++|++|++++|. +..+++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecCh
Confidence 9987 8899999999999999999987 4 78999999999999999998 579999999999999999986 777766
Q ss_pred chhCCCCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC--CCCccc-cccccceeEE
Q 002432 343 NVIASFTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN--ALPEGF-FVRELERFKI 415 (922)
Q Consensus 343 ~~l~~L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~l~~ 415 (922)
..++.+++|+ +|++++|.+.. .+.......+|+.|++++|... .+|..+ .+..++.+.+
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~--------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDF--------------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCE--------------ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred hhhhhhhccccccceeeccCCCcce--------------eCcccccCceeeeeeccCCccchhHHHHHhccccccccccc
Confidence 5577766665 89999998873 2233333448999999988653 222222 4445555444
Q ss_pred EEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCC--cceeEEeeccccCcccccccccccc
Q 002432 416 LIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKNILFELDTQG 493 (922)
Q Consensus 416 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~ 493 (922)
..+...... .+..+. ... ..++ -.++.+.+............ ...
T Consensus 237 ~~~~~~~~~----------------------~l~~~~----~~~-----~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~ 283 (606)
T 3vq2_A 237 ILGEFKDER----------------------NLEIFE----PSI-----MEGLCDVTIDEFRLTYTNDFSDDIVK--FHC 283 (606)
T ss_dssp EEECCTTSC----------------------CCSCCC----GGG-----GTTGGGSEEEEEEECCCTTCCGGGGS--CGG
T ss_pred cccccccCC----------------------cccccC----hHH-----hhhhhhccHhheeccccccccccccc--ccc
Confidence 433221000 000000 000 0011 13455555443333333222 245
Q ss_pred ccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCcccccccccc
Q 002432 494 FSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTT 573 (922)
Q Consensus 494 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 573 (922)
+++|+.|++.++.. ..+ .... .+++|+.|++.+|. +..++ .+
T Consensus 284 l~~L~~L~l~~~~~-~~l------~~l~---------------------------~~~~L~~L~l~~n~-l~~lp---~~ 325 (606)
T 3vq2_A 284 LANVSAMSLAGVSI-KYL------EDVP---------------------------KHFKWQSLSIIRCQ-LKQFP---TL 325 (606)
T ss_dssp GTTCSEEEEESCCC-CCC------CCCC---------------------------TTCCCSEEEEESCC-CSSCC---CC
T ss_pred CCCCCEEEecCccc-hhh------hhcc---------------------------ccccCCEEEccccc-Ccccc---cC
Confidence 66777777766632 111 1122 34455555555553 23332 11
Q ss_pred ccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCC
Q 002432 574 KCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLP 653 (922)
Q Consensus 574 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~ 653 (922)
.+++|++|++++|..+..+. ...+++|+.|+++++. +..+. .....+..++
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~-----------------~~~l~~L~~L~ls~n~-l~~~~----------~~~~~~~~~~ 376 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFK-----------------KVALPSLSYLDLSRNA-LSFSG----------CCSYSDLGTN 376 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECC-----------------CCCCTTCCEEECCSSC-EEEEE----------ECCHHHHCCS
T ss_pred -CCCccceeeccCCcCccchh-----------------hccCCCCCEEECcCCc-cCCCc----------chhhhhccCC
Confidence 45555555555543332221 1234555555555442 11110 0012233577
Q ss_pred CcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcc
Q 002432 654 NLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCF 733 (922)
Q Consensus 654 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 733 (922)
+|+.|++++|.++.++. ....+++|++|++++| .+...++...+..+++|++|++++|. +..... ....
T Consensus 377 ~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~ 445 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSA--NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-------GIFL 445 (606)
T ss_dssp CCCEEECCSCSEEEECC--CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCT-------TTTT
T ss_pred cccEeECCCCccccchh--hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccch-------hhhc
Confidence 88888888888777752 2345788999999885 45554443457788899999998874 333211 1223
Q ss_pred cccccceeecccCCCccc-cCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcce
Q 002432 734 AFRRVTNISLCHLPELTC-LYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEE 812 (922)
Q Consensus 734 ~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 812 (922)
.+++|++|++++|..... ++..+. .+++|++|++++| +++.++.. .+..+++|++
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~---------------------~~~~l~~L~~ 501 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKC-QLEQISWG---------------------VFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCC-cCCccChh---------------------hhcccccCCE
Confidence 478899999988754442 454444 7899999999987 56555432 1366899999
Q ss_pred EeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcC-CCCeEEEecccceE
Q 002432 813 LGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFH-GLENLNLSFCSYKE 873 (922)
Q Consensus 813 L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~-~L~~L~l~~c~l~~ 873 (922)
|++++|++....|..+. .+++|++|+|++|.+..+|.. +..++ +|+.|++++|++.-
T Consensus 502 L~Ls~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYN---QLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECCSSCCSCEEGGGTT---TCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCCCcCHHHcc---CCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCccc
Confidence 99999999887776654 788999999999999999988 56776 69999999998764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-36 Score=353.99 Aligned_cols=531 Identities=15% Similarity=0.099 Sum_probs=345.6
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+.++..+|. ..++.+++|++++|.+..+++ .+ ++++|++|++++|... .++...|.++++|++|++++|.+.
T Consensus 19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCS
T ss_pred CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCccc
Confidence 34445555554 567789999999999988854 33 9999999999999876 565566799999999999999998
Q ss_pred cC-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432 270 SL-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVI 345 (922)
Q Consensus 270 ~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l 345 (922)
.+ |..++++++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++|. +..+++..+
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 173 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDM 173 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHH
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhh
Confidence 76 7799999999999999999988 688999999999999999999763 345559999999999986 888877779
Q ss_pred CCCCCCC--EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc-cccccceeEEEEccCCC
Q 002432 346 ASFTRLE--ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF-FVRELERFKILIGDRSF 422 (922)
Q Consensus 346 ~~L~~L~--~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~ 422 (922)
+.+++|+ +|++++|.+.. . +.......+|+.|+++++. .++..+ .+.++....+..+...
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~-------------~-~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~- 236 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAG-------------I-EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFE- 236 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCE-------------E-CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred hhhcccceeEEecCCCccCc-------------c-ChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhc-
Confidence 9999999 89999998874 2 2233344688999998775 122211 2222222222111110
Q ss_pred CCCccccccccccccccccccccccceeeEecccccchhhhcccCC--cceeEEeeccccCccccccccccccccCCcEE
Q 002432 423 EPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGI--RKVEYLCLDKFQGVKNILFELDTQGFSQLKHL 500 (922)
Q Consensus 423 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L 500 (922)
.+.... +......++ .+|+.|++.++....-....+ ..+++|++|
T Consensus 237 ------------------------~~~~~~-------i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L 283 (606)
T 3t6q_A 237 ------------------------DMDDED-------ISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQEL 283 (606)
T ss_dssp ------------------------TSCCCC-------CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEE
T ss_pred ------------------------cccccc-------cChhHhchhhcCceeEEEeecCccCccCHHHh--ccccCCCEE
Confidence 000000 000001122 268888888764332222222 567888888
Q ss_pred EEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCcc
Q 002432 501 LVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQ 580 (922)
Q Consensus 501 ~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 580 (922)
+++++. ++.++. ....+++|+.|+++++.- ..+.. .....+++|+.|++.+|.....+ +...+..+++|+
T Consensus 284 ~l~~n~-l~~lp~-----~l~~l~~L~~L~l~~n~l-~~~~~--~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~ 353 (606)
T 3t6q_A 284 DLTATH-LSELPS-----GLVGLSTLKKLVLSANKF-ENLCQ--ISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLR 353 (606)
T ss_dssp ECTTSC-CSCCCS-----SCCSCTTCCEEECTTCCC-SBGGG--GCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCC
T ss_pred eccCCc-cCCCCh-----hhcccccCCEEECccCCc-CcCch--hhhhccCcCCEEECCCCCccccc-chhhhhccCcCC
Confidence 888874 333321 134456666666666542 22211 12445666666666666332222 223345566666
Q ss_pred EEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeee
Q 002432 581 RIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALEL 660 (922)
Q Consensus 581 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 660 (922)
+|++++|. ++.+.. ....+..+++|+.|++
T Consensus 354 ~L~l~~n~-l~~~~~-------------------------------------------------~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 354 ELDLSHDD-IETSDC-------------------------------------------------CNLQLRNLSHLQSLNL 383 (606)
T ss_dssp EEECCSSC-CCEEEE-------------------------------------------------STTTTTTCTTCCEEEC
T ss_pred EEECCCCc-cccccC-------------------------------------------------cchhcccCCCCCEEEC
Confidence 66666643 221110 0011234566777777
Q ss_pred cccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccce
Q 002432 661 CEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTN 740 (922)
Q Consensus 661 ~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~ 740 (922)
++|.++.+....+ ..+++|++|++++| .++...+...+..+++|++|++++|. +..... .....+++|++
T Consensus 384 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~ 453 (606)
T 3t6q_A 384 SYNEPLSLKTEAF-KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-------QLFDGLPALQH 453 (606)
T ss_dssp CSCSCEEECTTTT-TTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-------TTTTTCTTCCE
T ss_pred CCCcCCcCCHHHh-cCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCH-------HHHhCCCCCCE
Confidence 7776666543332 24567777777774 33333333345667777777777763 222211 11223677777
Q ss_pred eecccCCCccc-cCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhh
Q 002432 741 ISLCHLPELTC-LYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKD 819 (922)
Q Consensus 741 L~l~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 819 (922)
|++++|.--.. ++.......+++|++|++++| +++.++.. .+..+++|++|++++|+
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---------------------~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH---------------------AFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh---------------------hhccccCCCEEECCCCc
Confidence 77777653321 221111237889999999987 56555332 23668999999999999
Q ss_pred hhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceE
Q 002432 820 IMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKE 873 (922)
Q Consensus 820 ~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~ 873 (922)
+....+..+. .+++| .|++++|.+..+|...++.+++|+.|++++|++.-
T Consensus 512 l~~~~~~~l~---~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 512 LTSSSIEALS---HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCGGGGGGGT---TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCcCChhHhC---ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 8887777654 77889 99999999999998888899999999999998764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=351.96 Aligned_cols=527 Identities=16% Similarity=0.157 Sum_probs=308.8
Q ss_pred EEecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432 190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ 267 (922)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 267 (922)
......++..+|. .++++++|++++|.+..+++ .+ ++++|++|++++|.... .++...|.++++||+|+|++|.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCc
Confidence 3344456777776 78899999999999977643 33 99999999999995432 6766667999999999999999
Q ss_pred CccC-chhhhccCCCCEEEccCCCCCC--ccc--cCCCCcCCEEEeecCCCccc--chhhcCCCCCCEEeccCCCCCCcc
Q 002432 268 LFSL-PSSIDLLVNLQTLCLDYSTLGD--ITI--IGKLKNLEILSLIESDIVEF--PEELGKLTKLRLLDLTNCFHLKVI 340 (922)
Q Consensus 268 i~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~ 340 (922)
+..+ |..|+++++|++|+|++|.+.. |.. ++++++|++|++++|.++.+ +..++++++|++|++++|. +..+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCee
Confidence 9976 8899999999999999999876 544 99999999999999999865 3579999999999999986 6555
Q ss_pred CcchhCCC--CCCCEEEccCCcccccccccCCcccccccCcccCCCCC------CCCEEEeeecCCC-CCCccc----cc
Q 002432 341 APNVIASF--TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP------RLTTLEIAVENDN-ALPEGF----FV 407 (922)
Q Consensus 341 p~~~l~~L--~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~~ 407 (922)
.+..++.+ ++|+.|++++|.+.. ..+..++.++ .|+.|++++|... ..+..+ ..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~-------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYS-------------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCC-------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CHHHcccccCCccceEECCCCcccc-------------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 44447777 899999999998774 2233333333 4999999988643 233322 11
Q ss_pred cccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccc-c
Q 002432 408 RELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNI-L 486 (922)
Q Consensus 408 ~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~ 486 (922)
.++..+ .+.... +.. ..+.. ..... .
T Consensus 231 ~~l~~L--------------------------------------~l~~~~--~~~--~~~~~-----------~l~~~~~ 257 (844)
T 3j0a_A 231 SQAFSL--------------------------------------ILAHHI--MGA--GFGFH-----------NIKDPDQ 257 (844)
T ss_dssp CCBSEE--------------------------------------ECCSSC--CBC--SSSCS-----------SSTTGGG
T ss_pred ccccce--------------------------------------eccccc--ccc--ccccc-----------ccCCCCh
Confidence 112222 111000 000 00000 00000 0
Q ss_pred cccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccc
Q 002432 487 FELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSN 566 (922)
Q Consensus 487 ~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 566 (922)
..+.....++|+.|+++++... .+. ......+++|+.|+++++. +..+.. .....+++|+.|++++| .+..
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~-~~~----~~~~~~l~~L~~L~L~~n~-i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~ 328 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVF-SLN----SRVFETLKDLKVLNLAYNK-INKIAD--EAFYGLDNLQVLNLSYN-LLGE 328 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCC-EEC----SCCSSSCCCCCEEEEESCC-CCEECT--TTTTTCSSCCEEEEESC-CCSC
T ss_pred hhhhccccCCccEEECCCCccc-ccC----hhhhhcCCCCCEEECCCCc-CCCCCh--HHhcCCCCCCEEECCCC-CCCc
Confidence 0010011245555555554321 110 0012344555555555443 222211 12445677777777776 4444
Q ss_pred cccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcc
Q 002432 567 IFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLF 646 (922)
Q Consensus 567 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~ 646 (922)
+.+ ..+..+++|+.|+++++. +..++... ...+++|+.|+++++. +..++
T Consensus 329 ~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~--------------~~~l~~L~~L~Ls~N~-l~~i~------------- 378 (844)
T 3j0a_A 329 LYS-SNFYGLPKVAYIDLQKNH-IAIIQDQT--------------FKFLEKLQTLDLRDNA-LTTIH------------- 378 (844)
T ss_dssp CCS-CSCSSCTTCCEEECCSCC-CCCCCSSC--------------SCSCCCCCEEEEETCC-SCCCS-------------
T ss_pred cCH-HHhcCCCCCCEEECCCCC-CCccChhh--------------hcCCCCCCEEECCCCC-CCccc-------------
Confidence 422 355667777777777753 43333211 1235555555555542 11111
Q ss_pred cccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCC
Q 002432 647 NGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGP 726 (922)
Q Consensus 647 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 726 (922)
.+++|+.|++++|.++.++. ...+++.|++++ ++++.++....+..+++|++|++++| .+..+....
T Consensus 379 ----~~~~L~~L~l~~N~l~~l~~-----~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-- 445 (844)
T 3j0a_A 379 ----FIPSIPDIFLSGNKLVTLPK-----INLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQ-- 445 (844)
T ss_dssp ----SCCSCSEEEEESCCCCCCCC-----CCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSS--
T ss_pred ----CCCCcchhccCCCCcccccc-----cccccceeeccc-CccccCchhhhhhcCCccceeeCCCC-ccccccccc--
Confidence 25677777777777665532 235677777777 45666554445567777777777775 333221110
Q ss_pred CCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeecc
Q 002432 727 GQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKI 806 (922)
Q Consensus 727 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (922)
....+++|+.|++++| .+...+... .....+..
T Consensus 446 ------------------------------~~~~~~~L~~L~Ls~N-~l~~~~~~~----------------~~~~~~~~ 478 (844)
T 3j0a_A 446 ------------------------------TPSENPSLEQLFLGEN-MLQLAWETE----------------LCWDVFEG 478 (844)
T ss_dssp ------------------------------SSCSCTTCCBCEEESC-CCSSSCCSC----------------CCSSCSSC
T ss_pred ------------------------------ccccCCccccccCCCC-ccccccccc----------------cchhhhcC
Confidence 0113445555555543 332221100 00012244
Q ss_pred ccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccce
Q 002432 807 FPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKK 886 (922)
Q Consensus 807 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~ 886 (922)
+++|++|++++|.+..+.+..+. .+++|+.|++++|.+..+|...+. ++|+.|++++|.+....+.. +++|+.
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~ 551 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFS---HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSV 551 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSS---SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCE
T ss_pred cccccEEECCCCcccccChhHcc---chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCE
Confidence 56666666666666655554433 556666666666666666655443 56666666666666554433 345666
Q ss_pred Eeccccc
Q 002432 887 LELICLN 893 (922)
Q Consensus 887 L~i~~c~ 893 (922)
|+++++|
T Consensus 552 l~l~~Np 558 (844)
T 3j0a_A 552 LDITHNK 558 (844)
T ss_dssp EEEEEEC
T ss_pred EEecCCC
Confidence 6665544
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=353.84 Aligned_cols=538 Identities=15% Similarity=0.110 Sum_probs=350.3
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccC-chhhhccCCCCEEEcc
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSL-PSSIDLLVNLQTLCLD 287 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~ 287 (922)
+..+.+++.+..+|. -.+++++|++++|.+. .++...|.++++|++|++++|. +..+ |..|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 456777788888887 4578999999998765 4554556899999999999984 4456 6788999999999999
Q ss_pred CCCCCC--ccccCCCCcCCEEEeecCCCcc-cchh--hcCCCCCCEEeccCCCCCCcc-CcchhCCCCCCCEEEccCCcc
Q 002432 288 YSTLGD--ITIIGKLKNLEILSLIESDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVI-APNVIASFTRLEELYMSNCFV 361 (922)
Q Consensus 288 ~~~l~~--p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~~l~~L~~L~~L~L~~~~~ 361 (922)
+|.+.. |..|+++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence 999876 6889999999999999998874 5554 8899999999999986 5554 333488999999999998877
Q ss_pred cccccccCCcccccccCcccCCCC--CCCCEEEeeecCCCC-CCccccccccceeEEEEccCCCCCCccccccccccccc
Q 002432 362 EWKVEDEGSSSKKSKASLDELMPL--PRLTTLEIAVENDNA-LPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRS 438 (922)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 438 (922)
.. ..+..+..+ ++|+.|++++|.... .+..+ +.
T Consensus 161 ~~-------------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~------------~~------------------- 196 (844)
T 3j0a_A 161 FL-------------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDW------------GK------------------- 196 (844)
T ss_dssp CC-------------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC------------CS-------------------
T ss_pred Ce-------------eCHHHcccccCCccceEECCCCccccccccch------------hh-------------------
Confidence 64 334455555 788888888776432 11110 00
Q ss_pred cccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccc-cccccCCcEEEEecCCCceEeecCccc
Q 002432 439 HFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELD-TQGFSQLKHLLVQNNPDLLFIVDSREI 517 (922)
Q Consensus 439 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~l~~i~~~~~~ 517 (922)
.. . +.....|+.|+++++......+..+. .-...+++.+.+..+..-.
T Consensus 197 ----~~--~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~-------- 245 (844)
T 3j0a_A 197 ----CM--N-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA-------- 245 (844)
T ss_dssp ----SS--C-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------
T ss_pred ----cC--C-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc--------
Confidence 00 0 00001355666655432222222111 0123466777766332100
Q ss_pred ccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccC
Q 002432 518 VDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIG 597 (922)
Q Consensus 518 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 597 (922)
...+.++... ....+..-..++|+.|++.++ .+..+. ...+..+++|+.|+++++. ++.+....
T Consensus 246 --~~~~~~l~~~-----------~~~~f~~l~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~ 309 (844)
T 3j0a_A 246 --GFGFHNIKDP-----------DQNTFAGLARSSVRHLDLSHG-FVFSLN-SRVFETLKDLKVLNLAYNK-INKIADEA 309 (844)
T ss_dssp --SSSCSSSTTG-----------GGTTTTTTTTSCCCEEECTTC-CCCEEC-SCCSSSCCCCCEEEEESCC-CCEECTTT
T ss_pred --cccccccCCC-----------ChhhhhccccCCccEEECCCC-cccccC-hhhhhcCCCCCEEECCCCc-CCCCChHH
Confidence 0001111110 000011111356777777666 344442 2345667777777777653 33332211
Q ss_pred CCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccc
Q 002432 598 GEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCF 677 (922)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l 677 (922)
...+++|+.|+++++. +..+. ...+..+++|+.|++++|.++.+....+ ..+
T Consensus 310 --------------~~~l~~L~~L~Ls~N~-l~~~~------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l 361 (844)
T 3j0a_A 310 --------------FYGLDNLQVLNLSYNL-LGELY------------SSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFL 361 (844)
T ss_dssp --------------TTTCSSCCEEEEESCC-CSCCC------------SCSCSSCTTCCEEECCSCCCCCCCSSCS-CSC
T ss_pred --------------hcCCCCCCEEECCCCC-CCccC------------HHHhcCCCCCCEEECCCCCCCccChhhh-cCC
Confidence 1345667777666653 22211 1233467888999999988877754433 457
Q ss_pred cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432 678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH 757 (922)
Q Consensus 678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 757 (922)
++|++|++++| .++.++ .+++|+.|++++| .+..++. ...+++.|+++++ .++.++....
T Consensus 362 ~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N-~l~~l~~-----------~~~~l~~L~ls~N-~l~~l~~~~~ 421 (844)
T 3j0a_A 362 EKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGN-KLVTLPK-----------INLTANLIHLSEN-RLENLDILYF 421 (844)
T ss_dssp CCCCEEEEETC-CSCCCS------SCCSCSEEEEESC-CCCCCCC-----------CCTTCCEEECCSC-CCCSSTTHHH
T ss_pred CCCCEEECCCC-CCCccc------CCCCcchhccCCC-Ccccccc-----------cccccceeecccC-ccccCchhhh
Confidence 89999999985 566553 3788999999886 5554421 1456888888875 3444432222
Q ss_pred cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCC--CCCCCC
Q 002432 758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFP--QDHLFG 835 (922)
Q Consensus 758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~ 835 (922)
...+++|+.|++++| ++...+... ....+++|+.|++++|.+...++.... ....++
T Consensus 422 ~~~l~~L~~L~Ls~N-~l~~~~~~~--------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 422 LLRVPHLQILILNQN-RFSSCSGDQ--------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp HTTCTTCCEEEEESC-CCCCCCSSS--------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred hhcCCccceeeCCCC-ccccccccc--------------------ccccCCccccccCCCCccccccccccchhhhcCcc
Confidence 236899999999986 565543321 124478999999999998755433221 134678
Q ss_pred CccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccccccccCCCCCCCcccccccE
Q 002432 836 SLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDLEYLWIPNSKMGDSILQNLEI 915 (922)
Q Consensus 836 sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~~ 915 (922)
+|+.|++++|.+..+|...+.++++|+.|++++|.+..+++... .++|+.|++++ ++|+.++... +.+|+.
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~Ls~-N~l~~~~~~~-------~~~L~~ 551 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR-NQLLAPNPDV-------FVSLSV 551 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC-CSCCCEEEEEE-ECCCCCCSCC-------CSSCCE
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh-hccccEEECCC-CcCCCCChhH-------hCCcCE
Confidence 99999999999999998888999999999999999998866554 48999999965 4666666443 457899
Q ss_pred EEeeecC
Q 002432 916 LKTVARS 922 (922)
Q Consensus 916 l~l~~~~ 922 (922)
+++++|.
T Consensus 552 l~l~~Np 558 (844)
T 3j0a_A 552 LDITHNK 558 (844)
T ss_dssp EEEEEEC
T ss_pred EEecCCC
Confidence 9999873
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=340.51 Aligned_cols=501 Identities=18% Similarity=0.204 Sum_probs=288.4
Q ss_pred cCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432 193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS 270 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~ 270 (922)
.+.++..+|. ...+++++|++++|.+..++.. .++++|++|++++|... .++...|.++++||+|++++|.+..
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCCc
Confidence 3345555554 4567888999999888777643 38888999999988765 5666667888999999999998887
Q ss_pred Cc-hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432 271 LP-SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVI 345 (922)
Q Consensus 271 lp-~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l 345 (922)
+| ..|+++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++|. +..+++..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 65 678889999999999988887 4 468889999999999988874 68888889999999998875 777766557
Q ss_pred CCCCCC----CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC--CCccc-cccccceeEEEEc
Q 002432 346 ASFTRL----EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA--LPEGF-FVRELERFKILIG 418 (922)
Q Consensus 346 ~~L~~L----~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~l~~~~~ 418 (922)
+.+++| +.|++++|.+.. ..+..+... +|+.|+++++.... ++..+ .+..++...+..+
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~-------------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNF-------------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCE-------------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred cchhccchhhhhcccCCCCcee-------------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 777777 788888887764 223444444 68888887664221 11110 1111111111100
Q ss_pred cCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccccccccccccc--C
Q 002432 419 DRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFS--Q 496 (922)
Q Consensus 419 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~--~ 496 (922)
.. ....+++.+.-. .+ ..++ .
T Consensus 236 ~~---------------------------------------------~~~~~l~~~~~~----------~~--~~l~~l~ 258 (570)
T 2z63_A 236 EF---------------------------------------------RNEGNLEKFDKS----------AL--EGLCNLT 258 (570)
T ss_dssp EC---------------------------------------------CCCSSCEECCTT----------TT--GGGGGSE
T ss_pred cc---------------------------------------------cCchhhhhcchh----------hh--ccccccc
Confidence 00 000000000000 00 0111 1
Q ss_pred CcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccC
Q 002432 497 LKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCL 576 (922)
Q Consensus 497 L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 576 (922)
++.+.+.++. .+.... ......+++|+.|++.++ .++.++. .+..+
T Consensus 259 l~~l~l~~~~-----------------------------~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~ 304 (570)
T 2z63_A 259 IEEFRLAYLD-----------------------------YYLDDI--IDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF 304 (570)
T ss_dssp EEEEEEEETT-----------------------------EEESCS--TTTTGGGTTCSEEEEESC-EECSCCB--CCSCC
T ss_pred hhhhhhhcch-----------------------------hhhhhc--hhhhcCcCcccEEEecCc-cchhhhh--hhccC
Confidence 2233333221 111110 011334555666666555 3333321 23334
Q ss_pred CCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcc
Q 002432 577 PSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLE 656 (922)
Q Consensus 577 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~ 656 (922)
+|++|++++|. +..++. ..+++|+.|.+.++.....++. ..+++|+
T Consensus 305 -~L~~L~l~~n~-~~~l~~-----------------~~l~~L~~L~l~~n~~~~~~~~---------------~~~~~L~ 350 (570)
T 2z63_A 305 -GWQHLELVNCK-FGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSE---------------VDLPSLE 350 (570)
T ss_dssp -CCSEEEEESCB-CSSCCB-----------------CBCSSCCEEEEESCBSCCBCCC---------------CBCTTCC
T ss_pred -CccEEeeccCc-ccccCc-----------------ccccccCEEeCcCCcccccccc---------------ccCCCCC
Confidence 66666666653 222221 1345555555554432222110 2456677
Q ss_pred eeeecccceeeecc-CCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccc
Q 002432 657 ALELCEINVKSIWH-NQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAF 735 (922)
Q Consensus 657 ~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l 735 (922)
.|++++|.++.... ......+++|++|++++| .+..+++. +..+++|++|++++|. +....... ....+
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~------~~~~l 420 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFS------VFLSL 420 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTTSC------TTTTC
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccchh------hhhcC
Confidence 77777765554320 001124566777777764 34444332 5566677777776652 22221101 12235
Q ss_pred cccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCc-cccccccccccccccccccCCCCCcceeeccccCcceEe
Q 002432 736 RRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKL-NTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELG 814 (922)
Q Consensus 736 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 814 (922)
++|++|++++|......+..+. .+++|++|++++|.-. ..+|.. +..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~p~~----------------------~~~l~~L~~L~ 476 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDI----------------------FTELRNLTFLD 476 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSC----------------------CTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhh--cCCcCcEEECcCCcCccccchhh----------------------hhcccCCCEEE
Confidence 6677777777654443443333 5777777777776322 134322 25567777777
Q ss_pred echhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEE
Q 002432 815 LSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKEL 874 (922)
Q Consensus 815 l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l 874 (922)
+++|++..+.+..+. .+++|+.|++++|.+..+|...+.++++|+.|++++|++...
T Consensus 477 l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 477 LSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCChhhhh---cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 777777666555543 566777777777777777766666777777777777766543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-34 Score=336.47 Aligned_cols=174 Identities=20% Similarity=0.204 Sum_probs=125.0
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCC
Q 002432 212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYST 290 (922)
Q Consensus 212 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 290 (922)
.+.+++.+..+|.... ++|++|++++|... .++...|.++++||+|++++|.+..++ ..|+++++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC---EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC---ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4555566667776442 67888888887655 444444578888888888888887664 567888888888888888
Q ss_pred CCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 291 LGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 291 l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
+.. + ..|+++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+..
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--- 162 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--- 162 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---
Confidence 776 4 457888888888888887774 356678888888888888765677775557888888888888877664
Q ss_pred ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
..+..++.+++|++|+++++....++
T Consensus 163 ----------~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 163 ----------YQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp ----------ECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred ----------cChhhhhccccCceEecccCcccccc
Confidence 44566777777888887766654433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=329.36 Aligned_cols=506 Identities=15% Similarity=0.165 Sum_probs=345.6
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccC
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDY 288 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 288 (922)
+.++..+..+..+|... .+++++|++++|... .++...|.++++|++|++++|.+..++ ..|+++++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC---EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccC---ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 44666666677777644 357999999999876 566666799999999999999998874 5789999999999999
Q ss_pred CCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccc
Q 002432 289 STLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|.+.. |..|+++++|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence 99887 4789999999999999999998876 58999999999999986 654 5665 8999999999999998764
Q ss_pred cccccCCcccccccCcccCCCCCCC----CEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRL----TTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSH 439 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 439 (922)
..+..++.+++| +.|++++|....++...
T Consensus 164 -------------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~---------------------------------- 196 (570)
T 2z63_A 164 -------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---------------------------------- 196 (570)
T ss_dssp -------------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----------------------------------
T ss_pred -------------ecHHHccchhccchhhhhcccCCCCceecCHHH----------------------------------
Confidence 233455555666 78888877655433321
Q ss_pred ccccccccceeeEecccccchhhhcccCCcceeEEeeccccCc-cccccccccccccCCcEEEEecCCCceEeecCcccc
Q 002432 440 FLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGV-KNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIV 518 (922)
Q Consensus 440 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 518 (922)
+. ..+|+.|++.++... ......+ ..+++++.+.+.....
T Consensus 197 ---~~-----------------------~~~L~~L~l~~n~~~~~~~~~~~--~~l~~l~~~~l~~~~~----------- 237 (570)
T 2z63_A 197 ---FK-----------------------EIRLHKLTLRNNFDSLNVMKTCI--QGLAGLEVHRLVLGEF----------- 237 (570)
T ss_dssp ---TT-----------------------TCEEEEEEEESCCSCTTHHHHHH--HTTTTCEEEEEEEEEC-----------
T ss_pred ---hc-----------------------cCcceeEecccccccccchhhhh--cCccccceeeeccccc-----------
Confidence 00 013344444332111 1111111 2344444444321100
Q ss_pred cCccccccccccccccccccccccccccccccc--CcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhcc
Q 002432 519 DCDAFPLLELLSLQNLINLKRICVDRLSTESFS--ELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI 596 (922)
Q Consensus 519 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 596 (922)
.....++.+.-.. ...++ .++.+.+.++..+....+ ..+..+++|++|+++++. ++.++..
T Consensus 238 --~~~~~l~~~~~~~-------------~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~ 300 (570)
T 2z63_A 238 --RNEGNLEKFDKSA-------------LEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDF 300 (570)
T ss_dssp --CCCSSCEECCTTT-------------TGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBC
T ss_pred --cCchhhhhcchhh-------------hccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhh
Confidence 0000111111000 11111 355666776654444422 456788999999999975 4444432
Q ss_pred CCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCccc
Q 002432 597 GGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCC 676 (922)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 676 (922)
. ..+ +|+.|.+.+|.-- .++. ..+++|+.|++++|.+...... ..
T Consensus 301 ~---------------~~~-~L~~L~l~~n~~~-~l~~---------------~~l~~L~~L~l~~n~~~~~~~~---~~ 345 (570)
T 2z63_A 301 S---------------YNF-GWQHLELVNCKFG-QFPT---------------LKLKSLKRLTFTSNKGGNAFSE---VD 345 (570)
T ss_dssp C---------------SCC-CCSEEEEESCBCS-SCCB---------------CBCSSCCEEEEESCBSCCBCCC---CB
T ss_pred h---------------ccC-CccEEeeccCccc-ccCc---------------ccccccCEEeCcCCcccccccc---cc
Confidence 2 245 8999999888532 3321 2578999999999966544332 45
Q ss_pred ccCccEEEeccCcCccccc-cHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432 677 FQRLTRLIVWGCQKLKFMF-YASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG 755 (922)
Q Consensus 677 l~~L~~L~l~~C~~L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 755 (922)
+++|++|++++| .+.... ....+..+++|++|++++| .+..++.. ...+++|++|++++|... ..+..
T Consensus 346 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--------~~~l~~L~~L~l~~n~l~-~~~~~ 414 (570)
T 2z63_A 346 LPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--------FLGLEQLEHLDFQHSNLK-QMSEF 414 (570)
T ss_dssp CTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--------EETCTTCCEEECTTSEEE-SCTTS
T ss_pred CCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-cccccccc--------ccccCCCCEEEccCCccc-cccch
Confidence 799999999996 455432 1245788999999999997 45555321 224789999999997533 33221
Q ss_pred cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhh-hhcCCCCCCCCCC
Q 002432 756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIM-MLLQGDFPQDHLF 834 (922)
Q Consensus 756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~ 834 (922)
.....+++|++|++++|......+. .+..+++|++|++++|.+. ...|..+ ..+
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l 469 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNG----------------------IFNGLSSLEVLKMAGNSFQENFLPDIF---TEL 469 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTT----------------------TTTTCTTCCEEECTTCEEGGGEECSCC---TTC
T ss_pred hhhhcCCCCCEEeCcCCcccccchh----------------------hhhcCCcCcEEECcCCcCccccchhhh---hcc
Confidence 1123799999999999743333332 2366899999999999987 3455554 478
Q ss_pred CCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCC-ccccccceEeccccccc
Q 002432 835 GSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLNDL 895 (922)
Q Consensus 835 ~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~L 895 (922)
++|++|++++|.+..++...+..+++|++|++++|.+..+++.. ..+++|+.|++++++--
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 89999999999999886666688999999999999999887654 45899999999887643
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-32 Score=318.84 Aligned_cols=494 Identities=15% Similarity=0.146 Sum_probs=285.5
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE 304 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 304 (922)
|+...+.+.+++... .+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.+.. |..|+++++|+
T Consensus 4 C~~~~~c~~~~~~l~---~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRSFT---SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp ECTTSEEECTTSCCS---SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCceEECCCCccc---cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 344455677777665 788765 37899999999999976 5789999999999999999987 47899999999
Q ss_pred EEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432 305 ILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE 381 (922)
Q Consensus 305 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (922)
+|++++|+++.+|.. ++++++|++|++++|. +.. +|.. ++++++|++|++++|.... . .....
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~--~----------~~~~~ 143 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS--E----------IRRID 143 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC--E----------ECTTT
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc--c----------cCHhh
Confidence 999999999988765 9999999999999986 664 3444 8999999999999987432 1 12357
Q ss_pred CCCCCCCCEEEeeecCCCC-CCccccccccceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccch
Q 002432 382 LMPLPRLTTLEIAVENDNA-LPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTI 460 (922)
Q Consensus 382 l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 460 (922)
++.+++|++|++++|.... .|..
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~-------------------------------------------------------- 167 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQS-------------------------------------------------------- 167 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTT--------------------------------------------------------
T ss_pred hhcccccCeeeccCCcccccChhh--------------------------------------------------------
Confidence 8889999999999887543 2222
Q ss_pred hhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccc
Q 002432 461 CLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRI 540 (922)
Q Consensus 461 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 540 (922)
...+++|+.|++.++... ..+..+ .+.+++|++|+++++....... ........
T Consensus 168 ----l~~l~~L~~L~l~~n~~~-~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~------------------ 221 (549)
T 2z81_A 168 ----LKSIRDIHHLTLHLSESA-FLLEIF-ADILSSVRYLELRDTNLARFQF--SPLPVDEV------------------ 221 (549)
T ss_dssp ----TTTCSEEEEEEEECSBST-THHHHH-HHSTTTBSEEEEESCBCTTCCC--CCCSSCCC------------------
T ss_pred ----hhccccCceEecccCccc-ccchhh-HhhcccccEEEccCCccccccc--cccchhhh------------------
Confidence 112234445554443221 111111 1346777777777663211000 00000112
Q ss_pred cccccccccccCcCeeEEecCCCcccccc---ccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCc
Q 002432 541 CVDRLSTESFSELRTMKVENCDELSNIFV---LSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQ 617 (922)
Q Consensus 541 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (922)
+++|+.|++.++. +....+ ...+..+++|+.+++++|... .+.... .........+++
T Consensus 222 ---------~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~--------~~~~~~~~~l~~ 282 (549)
T 2z81_A 222 ---------SSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLN-GLGDFN--------PSESDVVSELGK 282 (549)
T ss_dssp ---------CCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEE-CCSCCC--------CCTTTCCCCCTT
T ss_pred ---------hhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccccc-cccccc--------ccchhhhhhhcc
Confidence 3344444444431 111100 011233445555555554311 110000 000001123344
Q ss_pred ccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCcccccc-
Q 002432 618 IRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFY- 696 (922)
Q Consensus 618 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~- 696 (922)
|+.|.+.++.--..... ..+.......++|+.|++++|.++.++... ...+++|++|++++|.--...+.
T Consensus 283 L~~L~l~~~~i~~~~~~--------~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLF--------YDLSTVYSLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp CCEEEEESCBCSCGGGS--------CCCCHHHHHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHH
T ss_pred cccccccccccchhhhc--------ccchhhhhhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCccccccccc
Confidence 44444443321000000 000001123456777777777666553221 12457777777777542222211
Q ss_pred HHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcc
Q 002432 697 ASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLN 776 (922)
Q Consensus 697 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~ 776 (922)
...+..+++|++|++++| .++.+.... .....+++|++|++++| .++.+|.... .+++|++|++++| +++
T Consensus 354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~--~~~~L~~L~Ls~N-~l~ 423 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQN-HLRSMQKTG-----EILLTLKNLTSLDISRN-TFHPMPDSCQ--WPEKMRFLNLSST-GIR 423 (549)
T ss_dssp HTCTTSSTTCCEEECTTS-CCCCHHHHH-----HHGGGCTTCCEEECTTC-CCCCCCSCCC--CCTTCCEEECTTS-CCS
T ss_pred hhhhhccccCcEEEccCC-cccccccch-----hhhhcCCCCCEEECCCC-CCccCChhhc--ccccccEEECCCC-Ccc
Confidence 112456677777777775 444332100 01223667777777776 4556665544 5677777777775 455
Q ss_pred ccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHh
Q 002432 777 TFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLE 856 (922)
Q Consensus 777 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~ 856 (922)
.++... .++|++|++++|++..+. ..+++|++|++++|.+..+|.. .
T Consensus 424 ~l~~~~------------------------~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~~ip~~--~ 470 (549)
T 2z81_A 424 VVKTCI------------------------PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLKTLPDA--S 470 (549)
T ss_dssp CCCTTS------------------------CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSSCCCG--G
T ss_pred cccchh------------------------cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccCcCCCc--c
Confidence 554321 357777777777665432 2455777777777777777753 3
Q ss_pred hcCCCCeEEEecccceEEecCC-ccccccceEecccccc
Q 002432 857 KFHGLENLNLSFCSYKELFSNG-GQVHLIKKLELICLND 894 (922)
Q Consensus 857 ~l~~L~~L~l~~c~l~~l~~~~-~~~~sL~~L~i~~c~~ 894 (922)
.+++|+.|++++|.+..+++.. ..+++|+.|++++|+-
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 5777777777777777765542 4467777777776664
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-32 Score=320.92 Aligned_cols=523 Identities=17% Similarity=0.177 Sum_probs=261.2
Q ss_pred EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCC
Q 002432 213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTL 291 (922)
Q Consensus 213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l 291 (922)
+-++..+..+|..+. +++++|++++|.+. .++...|.++++||+|+|++|.|+.+|+ +|++|++|++|+|++|++
T Consensus 37 ~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcCccCCCCC-cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 333334555665331 36777777777665 5666666777777777777777777644 577777777777777777
Q ss_pred CC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCcc--CcchhCCCCCCCEEEccCCccccccc
Q 002432 292 GD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVI--APNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 292 ~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~--p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
+. | ..|.++++|++|++++|+++.+|.. |+++++|++|++++|. +..+ |.. ++++++|++|++++|.+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~--- 187 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS--- 187 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE---
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc---
Confidence 76 4 5577777777777777777777653 6777777777777765 4433 333 6777777777777776653
Q ss_pred ccCCcccccccCcccCCCCCC----CCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccc
Q 002432 367 DEGSSSKKSKASLDELMPLPR----LTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLI 442 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 442 (922)
..+..+..+.+ ...++++.+....++... ...+
T Consensus 188 ----------~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~-------------------------------- 224 (635)
T 4g8a_A 188 ----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-------------------------------- 224 (635)
T ss_dssp ----------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC--------------------------------
T ss_pred ----------cccccccchhhhhhhhhhhhcccCcccccCccc-ccch--------------------------------
Confidence 11222322222 224555555444333221 0000
Q ss_pred cccccceeeEecccccchh--hhcccCCcceeEEeec--cccCcccccc--ccccccccCCcEEEEecCCCceEeecCcc
Q 002432 443 LDHQSLRMLKLKLNWKTIC--LRKLQGIRKVEYLCLD--KFQGVKNILF--ELDTQGFSQLKHLLVQNNPDLLFIVDSRE 516 (922)
Q Consensus 443 ~~~~~l~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~--~~~~~~~~~~--~l~~~~l~~L~~L~l~~~~~l~~i~~~~~ 516 (922)
....+.+..+..... .....+++.++...+. .......... ......+..+....+.........
T Consensus 225 ----~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 295 (635)
T 4g8a_A 225 ----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL----- 295 (635)
T ss_dssp ----EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE-----
T ss_pred ----hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-----
Confidence 111111111100000 0001122222222221 1111000000 000011222222222221110000
Q ss_pred cccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhcc
Q 002432 517 IVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAI 596 (922)
Q Consensus 517 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 596 (922)
.........+.+++.+.+.++. +..+. .+....+|+.|++.+|. +..+..
T Consensus 296 ------------------------~~~~~~~~~~~~l~~l~~~~~~-~~~~~---~~~~~~~L~~L~l~~~~-~~~~~~- 345 (635)
T 4g8a_A 296 ------------------------DGIIDLFNCLTNVSSFSLVSVT-IERVK---DFSYNFGWQHLELVNCK-FGQFPT- 345 (635)
T ss_dssp ------------------------EECTTTTGGGTTCSEEEEESCE-EEECG---GGGSCCCCSEEEEESCE-ESSCCC-
T ss_pred ------------------------cchhhhhhhhcccccccccccc-ccccc---ccccchhhhhhhccccc-ccCcCc-
Confidence 0000112234455555555442 11111 12334455666665543 211111
Q ss_pred CCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCC-cc
Q 002432 597 GGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQT-PC 675 (922)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~ 675 (922)
..++.|+.+.+.+...-.. .....+++|+.|++++|.+........ ..
T Consensus 346 ----------------~~l~~L~~l~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 346 ----------------LKLKSLKRLTFTSNKGGNA---------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp ----------------CBCTTCCEEEEESCCSCCB---------------CCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ----------------ccchhhhhcccccccCCCC---------------cccccccccccchhhccccccccccccchh
Confidence 1234444444433321111 011235666667666664433221111 12
Q ss_pred cccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCC
Q 002432 676 CFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPG 755 (922)
Q Consensus 676 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 755 (922)
.+.+|+.|++..+... .++ ..+..+++|+.+++.++....... ...+..+++++.++++++..-...+..
T Consensus 395 ~~~~L~~L~~~~~~~~-~~~--~~~~~l~~L~~l~l~~~~~~~~~~-------~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVI-TMS--SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp SCSCCCEEECCSCSEE-EEC--SCCTTCTTCCEEECTTSEEESTTS-------SCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred hhhhhhhhhccccccc-ccc--ccccccccccchhhhhcccccccc-------ccccccccccccccccccccccccccc
Confidence 3456667766664322 222 124556667777666653222211 111223566666666665433322323
Q ss_pred cCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCC
Q 002432 756 LHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFG 835 (922)
Q Consensus 756 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 835 (922)
.. .+++|+.|++++|.....+... .+..+++|++|++++|++..+.+..|. .++
T Consensus 465 ~~--~~~~L~~L~Ls~N~~~~~~~~~---------------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~---~l~ 518 (635)
T 4g8a_A 465 FN--GLSSLEVLKMAGNSFQENFLPD---------------------IFTELRNLTFLDLSQCQLEQLSPTAFN---SLS 518 (635)
T ss_dssp TT--TCTTCCEEECTTCEEGGGEECS---------------------CCTTCTTCCEEECTTSCCCEECTTTTT---TCT
T ss_pred cc--cchhhhhhhhhhcccccccCch---------------------hhhhccccCEEECCCCccCCcChHHHc---CCC
Confidence 22 5667777777766544443222 235567777777777777766666544 667
Q ss_pred CccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--cccccceEeccccc
Q 002432 836 SLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QVHLIKKLELICLN 893 (922)
Q Consensus 836 sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~~sL~~L~i~~c~ 893 (922)
+|++|+|++|.+..+|...++++++|+.|++++|.+..+++... .+++|+.|+++++|
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 77777777777777776666777777777777777777665441 23677777776543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=1.1e-31 Score=315.97 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=112.3
Q ss_pred cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432 678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH 757 (922)
Q Consensus 678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 757 (922)
++|++|++++| .++.++ ...+..+++|++|++++| .+..++.............+++|+.|++++|. ++.++....
T Consensus 433 ~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 508 (636)
T 4eco_A 433 INVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR 508 (636)
T ss_dssp CCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGS
T ss_pred CCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhh
Confidence 45555555553 344443 234455666666666664 34444221111100001123477777777763 445654432
Q ss_pred cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeech------hhhhhhcCCCCCCC
Q 002432 758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSI------KDIMMLLQGDFPQD 831 (922)
Q Consensus 758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~~~~~~~~ 831 (922)
...+++|++|++++| +++.+|... ..+++|++|++++ |++....|.. +
T Consensus 509 ~~~l~~L~~L~Ls~N-~l~~ip~~~----------------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---l 562 (636)
T 4eco_A 509 ATTLPYLVGIDLSYN-SFSKFPTQP----------------------LNSSTLKGFGIRNQRDAQGNRTLREWPEG---I 562 (636)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCCGG----------------------GGCSSCCEEECCSCBCTTCCBCCCCCCTT---G
T ss_pred hccCCCcCEEECCCC-CCCCcChhh----------------------hcCCCCCEEECCCCcccccCcccccChHH---H
Confidence 236788888888875 565566542 5688888888854 5555555555 3
Q ss_pred CCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc---------ccccceEecccccccc
Q 002432 832 HLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ---------VHLIKKLELICLNDLE 896 (922)
Q Consensus 832 ~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~---------~~sL~~L~i~~c~~L~ 896 (922)
..+++|++|+|++|.+..+|..+. ++|+.|++++|++..+...... +...+..+|.+|+.|.
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 467899999999999999997753 8999999999988887543321 2223445777887764
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.3e-30 Score=310.20 Aligned_cols=524 Identities=18% Similarity=0.150 Sum_probs=323.5
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+.++..+|. +.+..+++|++++|.+..+++. .++++|++|++++|.+. .+++..|.++++|++|+|++|+++
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCC
Confidence 34456666765 5678999999999999999864 39999999999999876 788888899999999999999999
Q ss_pred cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcch
Q 002432 270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (922)
.+|. .|+++++|++|++++|.++. + ..|+++++|++|++++|.++. +|..++++++|++|++++|. +..++...
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 192 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD 192 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccc
Confidence 9875 68999999999999999998 4 579999999999999999874 57889999999999999986 88877665
Q ss_pred hCCCCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC-CCcc-c-cccccceeEEEE
Q 002432 345 IASFTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA-LPEG-F-FVRELERFKILI 417 (922)
Q Consensus 345 l~~L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~-~~~~L~~l~~~~ 417 (922)
+..+.+++ .++++.|.+.. ..........++.+++..+.... +... + .+..++......
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~--------------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNF--------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCE--------------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred ccchhhhhhhhhhhhcccCcccc--------------cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 76655544 67788777653 12223333355667776653210 0010 1 223333332222
Q ss_pred ccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccC---ccccccccccccc
Q 002432 418 GDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQG---VKNILFELDTQGF 494 (922)
Q Consensus 418 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l 494 (922)
+...... .+.... .. .......+....+..... ....... ...+
T Consensus 259 ~~~~~~~----------------------~l~~~~-------~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~~ 305 (635)
T 4g8a_A 259 GEFRNEG----------------------NLEKFD-------KS--ALEGLCNLTIEEFRLAYLDYYLDGIIDL--FNCL 305 (635)
T ss_dssp ECCTTSC----------------------CCSCCC-------TT--TTGGGGGSEEEEEEEECCCSCEEECTTT--TGGG
T ss_pred ccccccc----------------------cccccc-------cc--ccccccchhhhhhhhhhhcccccchhhh--hhhh
Confidence 2110000 000000 00 011112233332222111 1111111 1356
Q ss_pred cCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccc
Q 002432 495 SQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTK 574 (922)
Q Consensus 495 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 574 (922)
.+++.+.+.++... .+ ........|+.|.+.++.. .. .....++.|+.+.+..+.. ...+ ...
T Consensus 306 ~~l~~l~~~~~~~~-~~------~~~~~~~~L~~L~l~~~~~-~~-----~~~~~l~~L~~l~l~~n~~-~~~~---~~~ 368 (635)
T 4g8a_A 306 TNVSSFSLVSVTIE-RV------KDFSYNFGWQHLELVNCKF-GQ-----FPTLKLKSLKRLTFTSNKG-GNAF---SEV 368 (635)
T ss_dssp TTCSEEEEESCEEE-EC------GGGGSCCCCSEEEEESCEE-SS-----CCCCBCTTCCEEEEESCCS-CCBC---CCC
T ss_pred cccccccccccccc-cc------cccccchhhhhhhcccccc-cC-----cCcccchhhhhcccccccC-CCCc---ccc
Confidence 67788877766321 11 1123344566666665532 11 1123455666666665532 1111 123
Q ss_pred cCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCC
Q 002432 575 CLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPN 654 (922)
Q Consensus 575 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 654 (922)
.+++|+.++++++... .... .........+
T Consensus 369 ~l~~L~~L~ls~n~l~-~~~~-------------------------------------------------~~~~~~~~~~ 398 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLS-FKGC-------------------------------------------------CSQSDFGTIS 398 (635)
T ss_dssp BCTTCCEEECCSSCCB-EEEE-------------------------------------------------CCHHHHSCSC
T ss_pred cccccccchhhccccc-cccc-------------------------------------------------cccchhhhhh
Confidence 4566666666554311 1000 0011123456
Q ss_pred cceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCccc
Q 002432 655 LEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFA 734 (922)
Q Consensus 655 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 734 (922)
|+.+++..+....+.... ..+++|+.+++.+++..... +...+..+++++.++++++ .+..+.. .....
T Consensus 399 L~~L~~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~~~~-------~~~~~ 467 (635)
T 4g8a_A 399 LKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFN-------GIFNG 467 (635)
T ss_dssp CCEEECCSCSEEEECSCC--TTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTS-CCEECCT-------TTTTT
T ss_pred hhhhhccccccccccccc--cccccccchhhhhccccccc-ccccccccccccccccccc-ccccccc-------ccccc
Confidence 667777666555443322 24677777777775544332 3344667777777777765 3433321 11223
Q ss_pred ccccceeecccCCCccccC-CCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceE
Q 002432 735 FRRVTNISLCHLPELTCLY-PGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEEL 813 (922)
Q Consensus 735 l~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 813 (922)
+++|+.|+++++.....+. ..+. .+++|++|++++| +++.++.. .+.++++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N-~L~~l~~~---------------------~f~~l~~L~~L 523 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQC-QLEQLSPT---------------------AFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTS-CCCEECTT---------------------TTTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhh--hccccCEEECCCC-ccCCcChH---------------------HHcCCCCCCEE
Confidence 6778888888776555443 3333 7888888888886 67666543 23668888888
Q ss_pred eechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhc-CCCCeEEEecccce
Q 002432 814 GLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKF-HGLENLNLSFCSYK 872 (922)
Q Consensus 814 ~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l-~~L~~L~l~~c~l~ 872 (922)
+|++|++..+.+..|. .+++|++|+|++|.+..++.+.++.+ ++|+.|++++|++.
T Consensus 524 ~Ls~N~l~~l~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCCGGGT---TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCChhHHh---CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8888888776665543 67888899998888888877766776 68999999887653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.4e-31 Score=313.52 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred cCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcC
Q 002432 678 QRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLH 757 (922)
Q Consensus 678 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 757 (922)
++|+.|++++| .+..+| ...+..+++|+.|++++| .+..++............++++|+.|+|++| .++.++....
T Consensus 673 ~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~ 748 (876)
T 4ecn_A 673 INASTVTLSYN-EIQKFP-TELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR 748 (876)
T ss_dssp CCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS
T ss_pred CCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh
Confidence 35556666553 344442 334456666666666664 4444432211111011223446777777776 4445554432
Q ss_pred cCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeech------hhhhhhcCCCCCCC
Q 002432 758 TSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSI------KDIMMLLQGDFPQD 831 (922)
Q Consensus 758 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~~~~~~~~ 831 (922)
...+++|+.|++++| ++..+|... ..+++|+.|++++ |++....|.. +
T Consensus 749 ~~~l~~L~~L~Ls~N-~L~~lp~~l----------------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~---l 802 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYN-CFSSFPTQP----------------------LNSSQLKAFGIRHQRDAEGNRILRQWPTG---I 802 (876)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCCGG----------------------GGCTTCCEEECCCCBCTTCCBCCCCCCTT---G
T ss_pred hccCCCcCEEEeCCC-CCCccchhh----------------------hcCCCCCEEECCCCCCcccccccccChHH---H
Confidence 225778888888775 555565432 5677888888866 4454444544 3
Q ss_pred CCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecC
Q 002432 832 HLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSN 877 (922)
Q Consensus 832 ~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~ 877 (922)
..+++|+.|+|++|.+..+|..+. ++|+.|++++|++..+.+.
T Consensus 803 ~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECG
T ss_pred hcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChH
Confidence 367788888888888888887643 6888888888888777553
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=306.09 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=65.2
Q ss_pred EEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEee
Q 002432 233 LLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLI 309 (922)
Q Consensus 233 ~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~ 309 (922)
+|++++|... .+|..++ ++|++|++++|.+..++ ..+.++++|++|++++|.+.. |..|+++++|++|+++
T Consensus 4 ~l~ls~n~l~---~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLI---HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCS---SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred eEecCCCCcc---ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 4444444443 3444331 45555555555555543 355555566666666555554 3555566666666666
Q ss_pred cCCCcccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432 310 ESDIVEFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 310 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+|+++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred CCceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc
Confidence 6655555544 55666666666654 433 2333 566666666666655544
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.9e-30 Score=295.34 Aligned_cols=123 Identities=19% Similarity=0.176 Sum_probs=109.1
Q ss_pred cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCC
Q 002432 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 335 (922)
++||+++|.++.+|..+. ++|++|++++|.+.. |..|.++++|++|++++|+++.+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 689999999999998887 899999999999988 47899999999999999999977 6789999999999999986
Q ss_pred CCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
++.+|.. .+++|++|++++|.+.. ...+..++++++|++|++++|...
T Consensus 81 -l~~lp~~---~l~~L~~L~L~~N~l~~------------~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 81 -LVKISCH---PTVNLKHLDLSFNAFDA------------LPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp -CCEEECC---CCCCCSEEECCSSCCSS------------CCCCGGGGGCTTCCEEEEEESSCC
T ss_pred -eeecCcc---ccCCccEEeccCCcccc------------ccchhhhccCCcceEEEecCcccc
Confidence 8889874 89999999999998863 123578899999999999988754
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-28 Score=285.74 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=98.5
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL 306 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L 306 (922)
..++++++++... .+|..+ .++|++|++++|.+..+| ..++++++|++|++++|.++. |..|.++++|++|
T Consensus 32 ~~~~l~ls~~~L~---~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 32 LESMVDYSNRNLT---HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp -CCEEECTTSCCC---SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCCCc---cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3466666666554 566544 267777777777777665 467777777777777777776 4667777778888
Q ss_pred EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (922)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (922)
++++|+++.+|.. .+++|++|++++|. +..++. ..++++++|++|++++|.+.. ..+..+.++
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L 169 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------------LDLLPVAHL 169 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-------------TTTGGGTTS
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-------------Cchhhhhhc
Confidence 8877777777765 77778888887775 666542 337778888888887776653 222333333
Q ss_pred CCCCEEEeeecCC
Q 002432 386 PRLTTLEIAVEND 398 (922)
Q Consensus 386 ~~L~~L~l~~~~~ 398 (922)
+|+.|++++|..
T Consensus 170 -~L~~L~L~~n~l 181 (562)
T 3a79_B 170 -HLSCILLDLVSY 181 (562)
T ss_dssp -CEEEEEEEESSC
T ss_pred -eeeEEEeecccc
Confidence 347888877765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.8e-29 Score=290.61 Aligned_cols=144 Identities=21% Similarity=0.266 Sum_probs=125.0
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL 286 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L 286 (922)
..++++++++.+..+|.... ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34899999999999997653 89999999999876 67777779999999999999999987 678999999999999
Q ss_pred cCCCCCC-ccccCCCCcCCEEEeecCCCcccc--hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC--CEEEccCCcc
Q 002432 287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFP--EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL--EELYMSNCFV 361 (922)
Q Consensus 287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L--~~L~L~~~~~ 361 (922)
++|.++. |.. .+++|++|++++|+++.+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 9999998 655 8999999999999999764 789999999999999986 55532 5555565 9999999987
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1e-28 Score=290.74 Aligned_cols=442 Identities=14% Similarity=0.095 Sum_probs=271.0
Q ss_pred CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-------------cCchhhhccCCCCEEEccCCCCCC--
Q 002432 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-------------SLPSSIDLLVNLQTLCLDYSTLGD-- 293 (922)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-------------~lp~~i~~L~~L~~L~L~~~~l~~-- 293 (922)
.+++.|+++++... |.+|..+ +++++||+|+|++|.+. .+|... +.+|| ++++++.+..
T Consensus 81 ~~V~~L~L~~~~l~--g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFGAS--GRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSCCE--EEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCG
T ss_pred CCEEEEEecCcccC--CcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCc
Confidence 57889999988764 4788765 89999999999999652 344433 44556 6666655544
Q ss_pred ccccCC-------------------CCcCCEEEee--cCCCcccchhhcCCCCCCEEeccCCCCCCc-------------
Q 002432 294 ITIIGK-------------------LKNLEILSLI--ESDIVEFPEELGKLTKLRLLDLTNCFHLKV------------- 339 (922)
Q Consensus 294 p~~i~~-------------------L~~L~~L~L~--~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------- 339 (922)
|..+.. ...++.+.+. +|+++.+|..++++++|++|++++|. +..
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccc
Confidence 333331 1122222222 45677789889999999999999986 666
Q ss_pred -----cCcchhC--CCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC-CCC--CCccccccc
Q 002432 340 -----IAPNVIA--SFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN-DNA--LPEGFFVRE 409 (922)
Q Consensus 340 -----~p~~~l~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--~~~~~~~~~ 409 (922)
+|.. ++ ++++|++|++++|.+.+ ..+..++++++|++|++++|. ... +|..+
T Consensus 234 ~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~---- 295 (636)
T 4eco_A 234 YAQQYKTED-LKWDNLKDLTDVEVYNCPNLT-------------KLPTFLKALPEMQLINVACNRGISGEQLKDDW---- 295 (636)
T ss_dssp HHHHHTTSC-CCGGGCTTCCEEEEECCTTCS-------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH----
T ss_pred hhcccCchh-hhhcccCCCCEEEecCCcCCc-------------cChHHHhcCCCCCEEECcCCCCCccccchHHH----
Confidence 8877 88 89999999999988775 566888899999999999887 541 33221
Q ss_pred cceeEEEEccCCCCCCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCcccccccc
Q 002432 410 LERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFEL 489 (922)
Q Consensus 410 L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 489 (922)
.. |.
T Consensus 296 ---------------------------------------------------~~--------L~----------------- 299 (636)
T 4eco_A 296 ---------------------------------------------------QA--------LA----------------- 299 (636)
T ss_dssp ---------------------------------------------------HH--------HH-----------------
T ss_pred ---------------------------------------------------Hh--------hh-----------------
Confidence 00 00
Q ss_pred ccccccCCcEEEEecCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCcc-ccc
Q 002432 490 DTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELS-NIF 568 (922)
Q Consensus 490 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~ 568 (922)
....+++|++|+++++... .++ .. ...+.+++|+.|++.+| .+. .++
T Consensus 300 ~~~~l~~L~~L~L~~n~l~-~ip-----------------------------~~-~~l~~l~~L~~L~L~~N-~l~g~ip 347 (636)
T 4eco_A 300 DAPVGEKIQIIYIGYNNLK-TFP-----------------------------VE-TSLQKMKKLGMLECLYN-QLEGKLP 347 (636)
T ss_dssp HSGGGGTCCEEECCSSCCS-SCC-----------------------------CH-HHHTTCTTCCEEECCSC-CCEEECC
T ss_pred ccccCCCCCEEECCCCcCC-ccC-----------------------------ch-hhhccCCCCCEEeCcCC-cCccchh
Confidence 0012355555555554211 110 00 00222334444444443 222 221
Q ss_pred cccccccCCCccEEEEcccccchhhhccCCCCCCccCCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccc
Q 002432 569 VLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNG 648 (922)
Q Consensus 569 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~ 648 (922)
.+..+++|++|+++++. ++.++. .
T Consensus 348 ---~~~~l~~L~~L~L~~N~-l~~lp~----------------------------------------------------~ 371 (636)
T 4eco_A 348 ---AFGSEIKLASLNLAYNQ-ITEIPA----------------------------------------------------N 371 (636)
T ss_dssp ---CCEEEEEESEEECCSSE-EEECCT----------------------------------------------------T
T ss_pred ---hhCCCCCCCEEECCCCc-cccccH----------------------------------------------------h
Confidence 23334445555554432 211110 0
Q ss_pred cccCCC-cceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHh-------hhccccEEEEecccccceE
Q 002432 649 KVVLPN-LEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIK-------SLEQLQHLEIRNCTGLQVI 720 (922)
Q Consensus 649 ~~~l~~-L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~-------~l~~L~~L~l~~c~~l~~l 720 (922)
+..+++ |+.|++++|.++.++.......+++|++|++++| .+....+ ..+. .+++|++|++++| .+..+
T Consensus 372 l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l 448 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDG-KNFDPLDPTPFKGINVSSINLSNN-QISKF 448 (636)
T ss_dssp SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CTTTTTT-CSSCTTCSSCCCCCCEEEEECCSS-CCCSC
T ss_pred hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cCCCcch-hhhcccccccccCCCCCEEECcCC-ccCcC
Confidence 112344 5555555554444432222222446777777775 3333211 1133 5679999999996 55554
Q ss_pred ecccCCCCCCCcccccccceeecccCCCccccCCCcCc------CCCCCccEEEEecCCCcccccccccccccccccccc
Q 002432 721 ISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHT------SEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLH 794 (922)
Q Consensus 721 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~ 794 (922)
+.. ....+++|++|++++|. ++.++..... .++++|++|++++| +++.+|...
T Consensus 449 p~~-------~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~------------ 507 (636)
T 4eco_A 449 PKE-------LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF------------ 507 (636)
T ss_dssp CTH-------HHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG------------
T ss_pred CHH-------HHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh------------
Confidence 321 12237889999999975 4477765431 12238999999986 677776542
Q ss_pred CCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeec------CC-CcccchhHHhhcCCCCeEEEe
Q 002432 795 VPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD------DD-SASVPIGLLEKFHGLENLNLS 867 (922)
Q Consensus 795 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~------~~-l~~lp~~~l~~l~~L~~L~l~ 867 (922)
....+++|++|++++|++..+ |.. ...+++|+.|++++ |. ...+|..+ ..+++|++|+++
T Consensus 508 --------~~~~l~~L~~L~Ls~N~l~~i-p~~---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-~~l~~L~~L~Ls 574 (636)
T 4eco_A 508 --------RATTLPYLVGIDLSYNSFSKF-PTQ---PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIG 574 (636)
T ss_dssp --------STTTCTTCCEEECCSSCCSSC-CCG---GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-GGCSSCCEEECC
T ss_pred --------hhccCCCcCEEECCCCCCCCc-Chh---hhcCCCCCEEECCCCcccccCcccccChHHH-hcCCCCCEEECC
Confidence 002689999999999998873 444 34788999999954 33 45677665 689999999999
Q ss_pred cccceEEecCCccccccceEeccccccccccc
Q 002432 868 FCSYKELFSNGGQVHLIKKLELICLNDLEYLW 899 (922)
Q Consensus 868 ~c~l~~l~~~~~~~~sL~~L~i~~c~~L~~l~ 899 (922)
+|.+..++... .++|+.|++++|+- ..++
T Consensus 575 ~N~l~~ip~~~--~~~L~~L~Ls~N~l-~~~~ 603 (636)
T 4eco_A 575 SNDIRKVNEKI--TPNISVLDIKDNPN-ISID 603 (636)
T ss_dssp SSCCCBCCSCC--CTTCCEEECCSCTT-CEEE
T ss_pred CCcCCccCHhH--hCcCCEEECcCCCC-cccc
Confidence 99997776553 48999999987754 4444
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.2e-28 Score=287.86 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=101.2
Q ss_pred CChHHhhCCCCCcEEEeeCCcCcc------------------Cchhhh--ccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432 247 IPQRFFTGMRELKVVDLTNMQLFS------------------LPSSID--LLVNLQTLCLDYSTLGD--ITIIGKLKNLE 304 (922)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 304 (922)
+|..+ +++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.. |..|+++++|+
T Consensus 440 IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 66654 777788888888877776 777766 78888888888777554 67777888888
Q ss_pred EEEeecCC-Ccc--cchhhcCCC-------CCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCccc
Q 002432 305 ILSLIESD-IVE--FPEELGKLT-------KLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSK 373 (922)
Q Consensus 305 ~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~ 373 (922)
+|++++|+ ++. +|..++++. +|++|++++|. +..+|. +.++++++|++|++++|.+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~----------- 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR----------- 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-----------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-----------
Confidence 88888776 664 777666655 78888888775 667776 12777888888888777665
Q ss_pred ccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 374 KSKASLDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 374 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
..+ .++.+++|+.|++++|....+|..
T Consensus 587 ---~lp-~~~~L~~L~~L~Ls~N~l~~lp~~ 613 (876)
T 4ecn_A 587 ---HLE-AFGTNVKLTDLKLDYNQIEEIPED 613 (876)
T ss_dssp ---BCC-CCCTTSEESEEECCSSCCSCCCTT
T ss_pred ---cch-hhcCCCcceEEECcCCccccchHH
Confidence 233 677777788888877776555543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.6e-27 Score=264.83 Aligned_cols=409 Identities=19% Similarity=0.148 Sum_probs=190.4
Q ss_pred CCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCCC-------------CEEEccCC
Q 002432 224 EGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVNL-------------QTLCLDYS 289 (922)
Q Consensus 224 ~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~ 289 (922)
..++.+.||+|++++|... .+|.++ +++++|++|++++|.+. .+|.+++++.+| ++|++++|
T Consensus 6 ~~~~~~~L~~L~l~~n~l~---~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNLT---EMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccccccchhhhcccCchh---hCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3345567777777777653 677665 77888888888887776 577777776654 77777777
Q ss_pred CCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccccc
Q 002432 290 TLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDE 368 (922)
Q Consensus 290 ~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~ 368 (922)
.++. |.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~------ 144 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE------ 144 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS------
T ss_pred ccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC------
Confidence 7776 432 36777777777777777643 3677777777764 5555431 157777777777665
Q ss_pred CCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccccc
Q 002432 369 GSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQSL 448 (922)
Q Consensus 369 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 448 (922)
.. .+++++++|++|++++|....+|..
T Consensus 145 --------~l-p~~~~l~~L~~L~l~~N~l~~lp~~-------------------------------------------- 171 (454)
T 1jl5_A 145 --------KL-PELQNSSFLKIIDVDNNSLKKLPDL-------------------------------------------- 171 (454)
T ss_dssp --------SC-CCCTTCTTCCEEECCSSCCSCCCCC--------------------------------------------
T ss_pred --------CC-cccCCCCCCCEEECCCCcCcccCCC--------------------------------------------
Confidence 22 2477777777777776665444322
Q ss_pred eeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccccc
Q 002432 449 RMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLLEL 528 (922)
Q Consensus 449 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~ 528 (922)
.++|++|++.++.- ..++ . .+.+++|++|+++++..
T Consensus 172 -------------------~~~L~~L~L~~n~l-~~l~-~--~~~l~~L~~L~l~~N~l--------------------- 207 (454)
T 1jl5_A 172 -------------------PPSLEFIAAGNNQL-EELP-E--LQNLPFLTAIYADNNSL--------------------- 207 (454)
T ss_dssp -------------------CTTCCEEECCSSCC-SSCC-C--CTTCTTCCEEECCSSCC---------------------
T ss_pred -------------------cccccEEECcCCcC-CcCc-c--ccCCCCCCEEECCCCcC---------------------
Confidence 11333343433321 1111 1 13455555555554421
Q ss_pred cccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCccCCcc
Q 002432 529 LSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVVDNNN 608 (922)
Q Consensus 529 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 608 (922)
+.++. ..++|+.|++.+| .++.++ .+..+++|++|+++++. ++.++.
T Consensus 208 ---------~~l~~------~~~~L~~L~l~~n-~l~~lp---~~~~l~~L~~L~l~~N~-l~~l~~------------- 254 (454)
T 1jl5_A 208 ---------KKLPD------LPLSLESIVAGNN-ILEELP---ELQNLPFLTTIYADNNL-LKTLPD------------- 254 (454)
T ss_dssp ---------SSCCC------CCTTCCEEECCSS-CCSSCC---CCTTCTTCCEEECCSSC-CSSCCS-------------
T ss_pred ---------CcCCC------CcCcccEEECcCC-cCCccc---ccCCCCCCCEEECCCCc-CCcccc-------------
Confidence 11110 1135666666665 344432 14456666666666642 222110
Q ss_pred cccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEEeccC
Q 002432 609 AIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGC 688 (922)
Q Consensus 609 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C 688 (922)
.+++|+.|++++|.++.++. .+++|++|++++|
T Consensus 255 ------------------------------------------~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 255 ------------------------------------------LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSEN 287 (454)
T ss_dssp ------------------------------------------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred ------------------------------------------cccccCEEECCCCcccccCc-----ccCcCCEEECcCC
Confidence 12455666666665554321 2356677777664
Q ss_pred cCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEE
Q 002432 689 QKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLE 768 (922)
Q Consensus 689 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 768 (922)
.++.++. ..++|++|++++| .+..++. ..++|++|+++++ .++.++. .+++|++|+
T Consensus 288 -~l~~l~~-----~~~~L~~L~l~~N-~l~~i~~-----------~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~ 343 (454)
T 1jl5_A 288 -IFSGLSE-----LPPNLYYLNASSN-EIRSLCD-----------LPPSLEELNVSNN-KLIELPA-----LPPRLERLI 343 (454)
T ss_dssp -CCSEESC-----CCTTCCEEECCSS-CCSEECC-----------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEE
T ss_pred -ccCcccC-----cCCcCCEEECcCC-cCCcccC-----------CcCcCCEEECCCC-ccccccc-----cCCcCCEEE
Confidence 3444321 1256777777765 4444320 0146788888775 3444543 367899999
Q ss_pred EecCCCccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCc
Q 002432 769 VFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSA 848 (922)
Q Consensus 769 l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~ 848 (922)
+++| +++.+|. .+++|++|++++|.+..+. . .+.++..|.. ++...
T Consensus 344 L~~N-~l~~lp~-------------------------~l~~L~~L~L~~N~l~~l~--~-----ip~~l~~L~~-n~~~~ 389 (454)
T 1jl5_A 344 ASFN-HLAEVPE-------------------------LPQNLKQLHVEYNPLREFP--D-----IPESVEDLRM-NSHLA 389 (454)
T ss_dssp CCSS-CCSCCCC-------------------------CCTTCCEEECCSSCCSSCC--C-----CCTTCCEEEC-CC---
T ss_pred CCCC-ccccccc-------------------------hhhhccEEECCCCCCCcCC--C-----ChHHHHhhhh-ccccc
Confidence 9886 6666643 2678999999998876531 1 1234554432 24445
Q ss_pred ccchhHHhhcCCCCeEEEecccceEEecCCccccccceEeccccccc
Q 002432 849 SVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELICLNDL 895 (922)
Q Consensus 849 ~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~~c~~L 895 (922)
.+|. .+++|+.|++++|++.+++. .|++|+.|.+.+|.--
T Consensus 390 ~i~~----~~~~L~~L~ls~N~l~~~~~---iP~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 390 EVPE----LPQNLKQLHVETNPLREFPD---IPESVEDLRMNSERVV 429 (454)
T ss_dssp -----------------------------------------------
T ss_pred cccc----ccCcCCEEECCCCcCCcccc---chhhHhheeCcCcccC
Confidence 5553 35889999999998887532 2678899998776543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.5e-25 Score=254.33 Aligned_cols=168 Identities=23% Similarity=0.245 Sum_probs=130.2
Q ss_pred cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432 206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 285 (922)
.+++++|++.++.+..++....+++|++|++++|... .++. |.++++|++|++++|.+..++. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 5678888988888888876557888888888888765 5554 5888888888888888888776 88888888888
Q ss_pred ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432 286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
+++|.+.....+.++++|++|++++|.++.+| .++++++|++|+++++ +..++. ++++++|++|++++|.+..
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSD-- 191 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCC--
Confidence 88888887434888888888888888888776 4888888888888642 455544 7888888888888887652
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+..+..+++|+.|+++++...
T Consensus 192 -------------~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 192 -------------ISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp -------------CGGGGGCTTCSEEECCSSCCC
T ss_pred -------------ChhhccCCCCCEEEecCCccc
Confidence 244677788888888776644
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.6e-25 Score=254.16 Aligned_cols=147 Identities=24% Similarity=0.358 Sum_probs=108.2
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEE
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEIL 306 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L 306 (922)
.+++++.|++.++... .+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+.....++++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~---~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK---SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred HhccccEEecCCCCCc---cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEE
Confidence 3567888888877654 5654 4778888888888888887776 88888888888888888773238888888888
Q ss_pred EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386 (922)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (922)
++++|+++.+|. +.++++|++|++++|. +..++. ++++++|++|++.++ +. ....+.+++
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~---------------~~~~~~~l~ 177 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VT---------------DLKPLANLT 177 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CC---------------CCGGGTTCT
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-cc---------------CchhhccCC
Confidence 888888887765 7888888888888875 666653 778888888887532 22 123477777
Q ss_pred CCCEEEeeecCCC
Q 002432 387 RLTTLEIAVENDN 399 (922)
Q Consensus 387 ~L~~L~l~~~~~~ 399 (922)
+|+.|+++++...
T Consensus 178 ~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 178 TLERLDISSNKVS 190 (466)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECcCCcCC
Confidence 8888888766543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.1e-26 Score=257.18 Aligned_cols=175 Identities=19% Similarity=0.119 Sum_probs=92.3
Q ss_pred cCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCC
Q 002432 651 VLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEP 730 (922)
Q Consensus 651 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 730 (922)
.+++|+.|++++|.++.++. .+++|++|++++| .++.++. .+++|++|++++| .++.++.
T Consensus 235 ~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N-~l~~l~~-------- 294 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDN-YLTDLPE-----LPQSLTFLDVSEN-IFSGLSE-------- 294 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSEESC--------
T ss_pred CCCCCCEEECCCCcCCcccc-----cccccCEEECCCC-cccccCc-----ccCcCCEEECcCC-ccCcccC--------
Confidence 57788888888887776532 2478888888885 5666542 2477888888886 4555421
Q ss_pred CcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCc
Q 002432 731 PCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNL 810 (922)
Q Consensus 731 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 810 (922)
..++|++|++++|. ++.++. ..++|++|++++| ++..+|.. +++|
T Consensus 295 ---~~~~L~~L~l~~N~-l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~~-------------------------~~~L 339 (454)
T 1jl5_A 295 ---LPPNLYYLNASSNE-IRSLCD-----LPPSLEELNVSNN-KLIELPAL-------------------------PPRL 339 (454)
T ss_dssp ---CCTTCCEEECCSSC-CSEECC-----CCTTCCEEECCSS-CCSCCCCC-------------------------CTTC
T ss_pred ---cCCcCCEEECcCCc-CCcccC-----CcCcCCEEECCCC-cccccccc-------------------------CCcC
Confidence 02567888887763 444431 1247788888774 55555431 5677
Q ss_pred ceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecc-cceEEecCCccccccceEec
Q 002432 811 EELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFC-SYKELFSNGGQVHLIKKLEL 889 (922)
Q Consensus 811 ~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c-~l~~l~~~~~~~~sL~~L~i 889 (922)
++|++++|.+..+.. .+++|++|++++|.+..+|. -..++..|. .| ....++. .+++|+.|++
T Consensus 340 ~~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~l~~----ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~l 403 (454)
T 1jl5_A 340 ERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLREFPD----IPESVEDLR--MNSHLAEVPE---LPQNLKQLHV 403 (454)
T ss_dssp CEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCCC----CCTTCCEEE--CCC--------------------
T ss_pred CEEECCCCccccccc-------hhhhccEEECCCCCCCcCCC----ChHHHHhhh--hccccccccc---ccCcCCEEEC
Confidence 888887777654322 34677888887777766431 112233332 33 2223322 2589999999
Q ss_pred cccccccc
Q 002432 890 ICLNDLEY 897 (922)
Q Consensus 890 ~~c~~L~~ 897 (922)
++++ ++.
T Consensus 404 s~N~-l~~ 410 (454)
T 1jl5_A 404 ETNP-LRE 410 (454)
T ss_dssp --------
T ss_pred CCCc-CCc
Confidence 7754 443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.3e-25 Score=250.38 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEE
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILS 307 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~ 307 (922)
+++|++|++++|... .+| . |..+++|++|++++|.++.+| ++.+++|++|++++|.+...+ ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~---~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT---DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCC---CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcc---cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 344444444444333 233 1 345555555555555555543 455555555555555554421 45555555555
Q ss_pred eecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432 308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359 (922)
Q Consensus 308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~ 359 (922)
+++|+++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCC
Confidence 5555555443 4555555555555543 44432 445555555555554
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.4e-25 Score=250.58 Aligned_cols=148 Identities=21% Similarity=0.281 Sum_probs=112.4
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC---ccccCCCCcCCEEE
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLEILS 307 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~~L~ 307 (922)
+.++.+++... .+|. + .++|++|++++|.++.+ |..++++++|++|++++|.+.. +..|.++++|++|+
T Consensus 13 ~~~~c~~~~l~---~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 13 YNAICINRGLH---QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp TEEECCSSCCS---SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred cccCcCCCCcc---cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 45666666554 6665 2 37889999999998876 6788899999999999988763 46788899999999
Q ss_pred eecCCCccc-chhhcCCCCCCEEeccCCCCCCc-cC-cchhCCCCCCCEEEccCCcccccccccCCcccccccCccc-CC
Q 002432 308 LIESDIVEF-PEELGKLTKLRLLDLTNCFHLKV-IA-PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE-LM 383 (922)
Q Consensus 308 L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~-~p-~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 383 (922)
+++|+++.+ |..++++++|++|++++|. +.. ++ ...++++++|++|++++|.+.. ..+.. ++
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~ 151 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKK-------------IQPASFFL 151 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCS-------------CCCCGGGG
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCc-------------cCcccccC
Confidence 999988866 6778889999999999886 554 22 2337888899999998888763 22333 67
Q ss_pred CCCCCCEEEeeecCCCC
Q 002432 384 PLPRLTTLEIAVENDNA 400 (922)
Q Consensus 384 ~l~~L~~L~l~~~~~~~ 400 (922)
.+++|++|++++|....
T Consensus 152 ~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp GCTTCCEEECTTCCBSC
T ss_pred CCCcccEEeCCCCcccc
Confidence 78888888888776543
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.3e-24 Score=244.69 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=126.4
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cC-chhhhccCCCCEEEccC
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SL-PSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~ 288 (922)
.++..++.+..+|. -.++|++|++++|.+. .++...|+++++|++|++++|.+. .+ |..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45566666677776 2367888888888765 454455688888888888888876 45 45788888888888888
Q ss_pred CCCCC--ccccCCCCcCCEEEeecCCCcc-cchh--hcCCCCCCEEeccCCCCCCcc-CcchhCCCCCCCEEEccCCccc
Q 002432 289 STLGD--ITIIGKLKNLEILSLIESDIVE-FPEE--LGKLTKLRLLDLTNCFHLKVI-APNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 289 ~~l~~--p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
|.+.. |..|+++++|++|++++|+++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence 88876 6788888888888888888874 4444 7888888888888886 6655 4444788888888888888776
Q ss_pred ccccccCCcccccccCcccCCCC--CCCCEEEeeecCCCCCC
Q 002432 363 WKVEDEGSSSKKSKASLDELMPL--PRLTTLEIAVENDNALP 402 (922)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~ 402 (922)
. ..+..+..+ .+|+.|+++++....++
T Consensus 168 ~-------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 168 S-------------ICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp C-------------CCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred c-------------cChhhhhccccccccccccccCcccccc
Confidence 4 223344433 46777887777655544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.1e-24 Score=239.37 Aligned_cols=345 Identities=15% Similarity=0.128 Sum_probs=234.3
Q ss_pred ccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 205 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
..+++++|++++|.+..+|....+++|++|++++|... .+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~---~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS---CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC---eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 46789999999999988886559999999999999876 565 689999999999999999886 8999999999
Q ss_pred EccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
++++|.+...+ ++.+++|++|++++|+++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-
Confidence 99999998843 899999999999999999885 8999999999999997677772 7899999999999998873
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccc
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILD 444 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 444 (922)
. .++.+++|+.|++++|....++-
T Consensus 185 -------------l--~l~~l~~L~~L~l~~N~l~~~~l----------------------------------------- 208 (457)
T 3bz5_A 185 -------------L--DVSQNKLLNRLNCDTNNITKLDL----------------------------------------- 208 (457)
T ss_dssp -------------C--CCTTCTTCCEEECCSSCCSCCCC-----------------------------------------
T ss_pred -------------e--ccccCCCCCEEECcCCcCCeecc-----------------------------------------
Confidence 1 27888999999999887654421
Q ss_pred cccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccc
Q 002432 445 HQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFP 524 (922)
Q Consensus 445 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 524 (922)
..+++|+.|+++++.-.. ++ ...+++|+.|+++++.. +.+ ..+.++
T Consensus 209 ---------------------~~l~~L~~L~Ls~N~l~~-ip----~~~l~~L~~L~l~~N~l-~~~-------~~~~l~ 254 (457)
T 3bz5_A 209 ---------------------NQNIQLTFLDCSSNKLTE-ID----VTPLTQLTYFDCSVNPL-TEL-------DVSTLS 254 (457)
T ss_dssp ---------------------TTCTTCSEEECCSSCCSC-CC----CTTCTTCSEEECCSSCC-SCC-------CCTTCT
T ss_pred ---------------------ccCCCCCEEECcCCcccc-cC----ccccCCCCEEEeeCCcC-CCc-------CHHHCC
Confidence 112344444444432211 11 24566677777666632 111 133445
Q ss_pred cccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccchhhhccCCCCCCcc
Q 002432 525 LLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKMKEIFAIGGEEPDVV 604 (922)
Q Consensus 525 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 604 (922)
+|+.|.+++ .+|+.|++.+|..+..++ ...+++|+.|++++|+.+..++.
T Consensus 255 ~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~--------- 304 (457)
T 3bz5_A 255 KLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC--------- 304 (457)
T ss_dssp TCCEEECTT-----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC---------
T ss_pred CCCEEeccC-----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc---------
Confidence 555444322 245555566665444432 23456666666666665555442
Q ss_pred CCcccccccccCcccEEecCCCCCccccccCCCCCCCCCCcccccccCCCcceeeecccceeeeccCCCcccccCccEEE
Q 002432 605 DNNNAIENIEFAQIRYLSLGNLPELKSFCCEVKGPSMPPSLFNGKVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLI 684 (922)
Q Consensus 605 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~ 684 (922)
..++|+.|++++|++|+.+....+.... + .+..+++|+.|++++|.++.+ ++|..|+
T Consensus 305 ---------~~~~L~~L~l~~~~~L~~L~L~~N~l~~---l--~l~~l~~L~~L~l~~N~l~~l---------~~L~~L~ 361 (457)
T 3bz5_A 305 ---------QAAGITELDLSQNPKLVYLYLNNTELTE---L--DVSHNTKLKSLSCVNAHIQDF---------SSVGKIP 361 (457)
T ss_dssp ---------TTCCCSCCCCTTCTTCCEEECTTCCCSC---C--CCTTCTTCSEEECCSSCCCBC---------TTGGGSS
T ss_pred ---------CCCcceEechhhcccCCEEECCCCcccc---c--ccccCCcCcEEECCCCCCCCc---------ccccccc
Confidence 2345555556665555555544432211 1 134567777777777766653 4444454
Q ss_pred eccCcCccccccHHHHhhhccccEEEEecc
Q 002432 685 VWGCQKLKFMFYASMIKSLEQLQHLEIRNC 714 (922)
Q Consensus 685 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 714 (922)
+++ +.+... ..+..|+.+++++.
T Consensus 362 l~~-n~l~g~------~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 362 ALN-NNFEAE------GQTITMPKETLTNN 384 (457)
T ss_dssp GGG-TSEEEE------EEEEECCCBCCBTT
T ss_pred ccC-CcEEec------ceeeecCccccccC
Confidence 444 233221 24466777777764
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-24 Score=237.44 Aligned_cols=153 Identities=16% Similarity=0.298 Sum_probs=124.1
Q ss_pred CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCc
Q 002432 226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKN 302 (922)
Q Consensus 226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~ 302 (922)
..+.++++|++.++... .+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+.. |..|+++++
T Consensus 42 ~~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 36688888888888765 788888888999999999999888775 478889999999999998887 466888999
Q ss_pred CCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE 381 (922)
Q Consensus 303 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (922)
|++|++++|+++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~ 181 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------------VD 181 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB----------------CC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc----------------cc
Confidence 99999999988888876 4889999999999875 777766668888999999998887763 23
Q ss_pred CCCCCCCCEEEeeecCC
Q 002432 382 LMPLPRLTTLEIAVEND 398 (922)
Q Consensus 382 l~~l~~L~~L~l~~~~~ 398 (922)
++.+++|+.|+++++..
T Consensus 182 ~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp GGGCTTCSEEECCSSCC
T ss_pred cccccccceeecccccc
Confidence 55667888888876653
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.2e-24 Score=232.29 Aligned_cols=147 Identities=23% Similarity=0.348 Sum_probs=81.6
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEE
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILS 307 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~ 307 (922)
+++|+.|+++++... .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+.++++|++|+
T Consensus 43 l~~L~~L~l~~~~i~---~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVA---SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred cccccEEEEeCCccc---cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 344555555554433 3332 3556666666666666665554 556666666666666655544566666666666
Q ss_pred eecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCC
Q 002432 308 LIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR 387 (922)
Q Consensus 308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 387 (922)
+++|.++.+|. +.++++|++|++++|.....++. ++++++|++|++++|.+.. ...+..+++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------~~~~~~l~~ 178 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------------VTPIANLTD 178 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCTT
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------------chhhccCCC
Confidence 66666665554 56666666666666543444433 5666666666666655442 112455556
Q ss_pred CCEEEeeecCC
Q 002432 388 LTTLEIAVEND 398 (922)
Q Consensus 388 L~~L~l~~~~~ 398 (922)
|+.|+++++..
T Consensus 179 L~~L~l~~n~l 189 (347)
T 4fmz_A 179 LYSLSLNYNQI 189 (347)
T ss_dssp CSEEECTTSCC
T ss_pred CCEEEccCCcc
Confidence 66666655543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.9e-23 Score=225.31 Aligned_cols=282 Identities=18% Similarity=0.209 Sum_probs=203.2
Q ss_pred cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432 204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT 283 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 283 (922)
...+++++|++.++.+..++....+++|++|++++|... .++. |..+++|++|++++|.+..+| .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~---~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT---DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc---cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 456789999999999998887668999999999999776 5665 699999999999999999886 5999999999
Q ss_pred EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|++++|.+.....+..+++|++|++++|.....+..+.++++|++|++++|. +..++. ++++++|++|++++|.+..
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc
Confidence 9999999998444999999999999999555444569999999999999986 777765 8899999999999998763
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCcccccccccccccccccc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLIL 443 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 443 (922)
+..+..+++|+.|+++++....++..
T Consensus 192 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------- 217 (347)
T 4fmz_A 192 ---------------ISPLASLTSLHYFTAYVNQITDITPV--------------------------------------- 217 (347)
T ss_dssp ---------------CGGGGGCTTCCEEECCSSCCCCCGGG---------------------------------------
T ss_pred ---------------cccccCCCccceeecccCCCCCCchh---------------------------------------
Confidence 23377889999999998876543321
Q ss_pred ccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCccc
Q 002432 444 DHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAF 523 (922)
Q Consensus 444 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 523 (922)
..+++|+.|++.++.... ... ...+++|++|+++++.. ..+ .....+
T Consensus 218 ----------------------~~~~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~l~~n~l-~~~------~~~~~l 264 (347)
T 4fmz_A 218 ----------------------ANMTRLNSLKIGNNKITD-LSP---LANLSQLTWLEIGTNQI-SDI------NAVKDL 264 (347)
T ss_dssp ----------------------GGCTTCCEEECCSSCCCC-CGG---GTTCTTCCEEECCSSCC-CCC------GGGTTC
T ss_pred ----------------------hcCCcCCEEEccCCccCC-Ccc---hhcCCCCCEEECCCCcc-CCC------hhHhcC
Confidence 122344555555443221 111 24567777777776632 211 123455
Q ss_pred ccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccc
Q 002432 524 PLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCN 588 (922)
Q Consensus 524 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 588 (922)
++|+.|+++++. +..+ .....+++|+.|++.+| .+....+ ..+..+++|++|++++|+
T Consensus 265 ~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 265 TKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred CCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc
Confidence 666666666652 3332 12445667777777776 3433322 344566777777777765
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.2e-23 Score=235.55 Aligned_cols=147 Identities=24% Similarity=0.312 Sum_probs=71.6
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 289 (922)
.++..++.+..+|... .+++++|++++|... .++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4445555555555432 234555555555443 33333345555555555555555543 444555555555555555
Q ss_pred CCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 290 TLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
.+.. | ..|.++++|++|++++|+++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc
Confidence 5544 2 3345555555555555555433 3334555555555555543 44443333455555555555554443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-23 Score=245.56 Aligned_cols=152 Identities=16% Similarity=0.309 Sum_probs=120.6
Q ss_pred CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCc
Q 002432 226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKN 302 (922)
Q Consensus 226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~ 302 (922)
..+++++.+++.++... .+|..+|.++++|++|++++|.+..+| ..|+.+++|++|+|++|.+.. |..|+++++
T Consensus 48 l~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 35678888888888765 788888888888999999988888765 478888889999998888877 456788888
Q ss_pred CCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCccc
Q 002432 303 LEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDE 381 (922)
Q Consensus 303 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (922)
|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. ..
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~~ 187 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------------VD 187 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB----------------CC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC----------------cC
Confidence 99999988888888776 4888888888888875 777766668888888888888887763 13
Q ss_pred CCCCCCCCEEEeeecC
Q 002432 382 LMPLPRLTTLEIAVEN 397 (922)
Q Consensus 382 l~~l~~L~~L~l~~~~ 397 (922)
++.+++|+.|++++|.
T Consensus 188 ~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 188 LSLIPSLFHANVSYNL 203 (597)
T ss_dssp GGGCTTCSEEECCSSC
T ss_pred hhhhhhhhhhhcccCc
Confidence 4556677777777654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-22 Score=225.37 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=117.2
Q ss_pred CCCCCcEEEeeCCcCccCchh-hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEE
Q 002432 254 GMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLL 329 (922)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 329 (922)
.+.++|+|+++++.+..+|.. +..+++|++|++++|.+.. +..|..+++|++|++++|.++.+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999999875 6899999999999999988 4689999999999999999998754 58999999999
Q ss_pred eccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 330 DLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 330 ~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
++++|. ++.+|...++++++|++|++++|.+.. ..+..++.+++|++|++++|....
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER-------------IEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc-------------cChhhccCCCCCCEEECCCCcCCc
Confidence 999986 889998867999999999999998874 334568889999999998876543
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=227.56 Aligned_cols=308 Identities=18% Similarity=0.175 Sum_probs=222.3
Q ss_pred EecCCCCCCCCCccccCcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcC
Q 002432 191 LVRNGDVWEWPDEDALKKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQL 268 (922)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i 268 (922)
...+.++..+|. ...+.+++|++++|.+..++. .+ ++++|++|++++|.+. .++...|.++++|++|+|++|.+
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcC
Confidence 344455666664 567899999999999988754 33 8999999999999776 56555679999999999999999
Q ss_pred ccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcch
Q 002432 269 FSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 269 ~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (922)
..+|. .+.++++|++|++++|.+.. +..|.++++|++|++++|.++.+ |..+.++++|++|++++|. +..++...
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEA 171 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhH
Confidence 99976 57999999999999999987 57899999999999999999976 5578999999999999986 88898877
Q ss_pred hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC-CCCCccccccccceeEEEEccCCCC
Q 002432 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEGFFVRELERFKILIGDRSFE 423 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~ 423 (922)
++++++|+.|++++|.+.. .....+..+++|+.|+++++.. ..++...
T Consensus 172 l~~l~~L~~L~l~~n~i~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------------ 220 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINA-------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNC------------------ 220 (477)
T ss_dssp HTTCTTCCEEEEESCCCCE-------------ECTTCSCSCTTCCEEEEECCTTCCEECTTT------------------
T ss_pred hcccCCCcEEeCCCCcCcE-------------eChhhcccCcccceeeCCCCccccccCccc------------------
Confidence 9999999999999998874 3346788899999999998652 2222211
Q ss_pred CCccccccccccccccccccccccceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEe
Q 002432 424 PPVILSKDWFRISRSHFLILDHQSLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQ 503 (922)
Q Consensus 424 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~ 503 (922)
+ ...+|+.|++.++.-. .++.. ....+++|+.|+++
T Consensus 221 -------------------~-----------------------~~~~L~~L~l~~n~l~-~~~~~-~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 221 -------------------L-----------------------YGLNLTSLSITHCNLT-AVPYL-AVRHLVYLRFLNLS 256 (477)
T ss_dssp -------------------T-----------------------TTCCCSEEEEESSCCC-SCCHH-HHTTCTTCCEEECC
T ss_pred -------------------c-----------------------cCccccEEECcCCccc-ccCHH-HhcCccccCeeECC
Confidence 0 0124555555544321 12110 11456777777777
Q ss_pred cCCCceEeecCcccccCcccccccccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEE
Q 002432 504 NNPDLLFIVDSREIVDCDAFPLLELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIA 583 (922)
Q Consensus 504 ~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 583 (922)
++. +..++. .....+++|+.|+++++. +..+.. ..+..+++|+.|++.++ +++.++ ...+..+++|++|+
T Consensus 257 ~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 257 YNP-ISTIEG----SMLHELLRLQEIQLVGGQ-LAVVEP--YAFRGLNYLRVLNVSGN-QLTTLE-ESVFHSVGNLETLI 326 (477)
T ss_dssp SSC-CCEECT----TSCTTCTTCCEEECCSSC-CSEECT--TTBTTCTTCCEEECCSS-CCSCCC-GGGBSCGGGCCEEE
T ss_pred CCc-CCccCh----hhccccccCCEEECCCCc-cceECH--HHhcCcccCCEEECCCC-cCceeC-HhHcCCCcccCEEE
Confidence 764 333221 113455667777776653 332211 12455677888888777 565553 34556677888888
Q ss_pred Ecccc
Q 002432 584 VIKCN 588 (922)
Q Consensus 584 l~~c~ 588 (922)
+++++
T Consensus 327 l~~N~ 331 (477)
T 2id5_A 327 LDSNP 331 (477)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 87765
No 40
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.88 E-value=2.4e-24 Score=247.79 Aligned_cols=169 Identities=13% Similarity=0.113 Sum_probs=129.8
Q ss_pred CcceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCC
Q 002432 3 SEANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTENN 82 (922)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~ 82 (922)
+..+|++++|+++|||+||+++|+....++++++++++|+++|+|+||||+++|+.|+.+ +. +|.+.+.+. .+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~-----l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK-----LE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH-----HH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH-----hh
Confidence 346899999999999999999995444357889999999999999999999999999877 43 233333321 11
Q ss_pred CccchHHHHHHHHHHHhcCCchhHHHHHh-----------hcccc-CCCchhHHHHHHHHhc--CCccccc----HHHHH
Q 002432 83 FHRELGKAYTAIKLSYDALKGEQLKKIFQ-----------LCSLM-PKSFFASDLFKYCIGL--GIFRGID----MEDAR 144 (922)
Q Consensus 83 ~~~~~~~~~~~l~lsY~~L~~~~lk~cfl-----------y~~~f-~~~~~~~~Li~~Wiae--G~i~~~~----~e~~~ 144 (922)
.. ...++++++++||++||++ +|.||+ |||+| ++|.|. +++|+|+ ||+.+.. .++++
T Consensus 357 ~~-~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~---i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 357 SR-GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP---VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp HH-CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE---HHHHHHHSCC-------CCCTHHHH
T ss_pred cc-cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee---eeeeeeeccceeccCCCCCCHHHHH
Confidence 10 1234888999999999998 999999 99999 789987 8999999 9998654 44444
Q ss_pred HHHHHHHHHHHhhcceeccc--ccceEEecHHHHHHHHHHHcccC
Q 002432 145 NKLYTLVHELKDSCLLLEGY--SCREFSMHDVVHDVAILIACGEQ 187 (922)
Q Consensus 145 ~~~~~~i~~L~~~~l~~~~~--~~~~~~mhdli~dl~~~~~~~e~ 187 (922)
+ +|++|+++||++... ....|+|||+||++|..++.+++
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 3 599999999998753 34579999999999998887665
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.8e-22 Score=229.94 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=117.5
Q ss_pred CCCCCcEEEeeCCcCccCchh-hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEE
Q 002432 254 GMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLL 329 (922)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 329 (922)
.+.++++|+++++.+..+|.. ++++++|++|++++|.+.. +..|+.+++|++|++++|.++.+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 468899999999999999875 6889999999999999988 46999999999999999999988654 7999999999
Q ss_pred eccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 330 DLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 330 ~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
++++|. +..+|...++++++|++|++++|.+.. ..+..++.+++|+.|++++|....
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER-------------IEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC-------------CChhhhhcCCcCcEEECcCCCCCC
Confidence 999986 889998867999999999999998874 445678899999999998886543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=6.8e-21 Score=205.80 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=106.5
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL 306 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L 306 (922)
+++.++++++... .+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.+.. |..|+++++|++|
T Consensus 34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 5777777777655 566644 357788888888887763 467888888888888888776 5678888888888
Q ss_pred EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386 (922)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (922)
++++|+++.+|..+. ++|++|++++|. +..+|...++++++|++|++++|.+.. .+..+..+..+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l- 172 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL- 172 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-
Confidence 888888887776655 678888888875 777776667788888888888776642 11223445555
Q ss_pred CCCEEEeeecCCCCC
Q 002432 387 RLTTLEIAVENDNAL 401 (922)
Q Consensus 387 ~L~~L~l~~~~~~~~ 401 (922)
+|+.|++++|....+
T Consensus 173 ~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 173 KLNYLRISEAKLTGI 187 (332)
T ss_dssp CCSCCBCCSSBCSSC
T ss_pred ccCEEECcCCCCCcc
Confidence 666666666654433
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.7e-20 Score=200.98 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=108.7
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEE
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEIL 306 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L 306 (922)
++++++++++... .+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.+.. |..|+++++|++|
T Consensus 32 ~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCcc---ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 5677777766554 566543 3577888888888877754 67788888888888888776 5778888888888
Q ss_pred EeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432 307 SLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386 (922)
Q Consensus 307 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (922)
++++|+++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+.. .+..+..+..++
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~ 171 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMK 171 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCT
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCC
Confidence 888888887776654 678888888875 777776667888888888888776642 112345566777
Q ss_pred CCCEEEeeecCCCCCC
Q 002432 387 RLTTLEIAVENDNALP 402 (922)
Q Consensus 387 ~L~~L~l~~~~~~~~~ 402 (922)
+|+.|+++++....+|
T Consensus 172 ~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 172 KLSYIRIADTNITTIP 187 (330)
T ss_dssp TCCEEECCSSCCCSCC
T ss_pred CcCEEECCCCccccCC
Confidence 7777777766655443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=9.2e-23 Score=239.90 Aligned_cols=64 Identities=17% Similarity=-0.003 Sum_probs=36.8
Q ss_pred cccCcceEeechhhhhhh-cCCCCCCCCCCCCccEEEeecCCCccc-chhHHhhcCCCCeEEEecccce
Q 002432 806 IFPNLEELGLSIKDIMML-LQGDFPQDHLFGSLKDLEVRDDDSASV-PIGLLEKFHGLENLNLSFCSYK 872 (922)
Q Consensus 806 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~sL~~L~l~~~~l~~l-p~~~l~~l~~L~~L~l~~c~l~ 872 (922)
.+++|++|++++|++... .+.. ...+++|+.|+|++|.+..- ...+.+.+++|+.|++++|+++
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHH---HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred hCccceEeeccCCCCCHHHHHHH---HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 366677777777665431 1111 12456777777777665431 2233456777777777777644
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.3e-21 Score=204.83 Aligned_cols=173 Identities=20% Similarity=0.245 Sum_probs=153.0
Q ss_pred cCcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 206 LKKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
..+++.|++.+|.+..+|..+ ++++|++|++++|... .+|..+ +++++|++|++++|.+..+|..++++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 357899999999999998876 8999999999999876 788765 89999999999999999999999999999999
Q ss_pred EccCCCCCC--ccccC---------CCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCE
Q 002432 285 CLDYSTLGD--ITIIG---------KLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEE 353 (922)
Q Consensus 285 ~L~~~~l~~--p~~i~---------~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~ 353 (922)
++++|.+.. |..++ ++++|++|++++|+++.+|..++++++|++|++++|. +..+|.. ++++++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCE
Confidence 999987544 66655 4999999999999999999999999999999999986 8888886 999999999
Q ss_pred EEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432 354 LYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397 (922)
Q Consensus 354 L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (922)
|++++|.+.. ..+..++.+++|+.|++++|.
T Consensus 234 L~Ls~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 234 LDLRGCTALR-------------NYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp EECTTCTTCC-------------BCCCCTTCCCCCCEEECTTCT
T ss_pred EECcCCcchh-------------hhHHHhcCCCCCCEEECCCCC
Confidence 9999988775 556778899999999998765
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.4e-20 Score=203.22 Aligned_cols=171 Identities=18% Similarity=0.261 Sum_probs=134.4
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL 286 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L 286 (922)
+++.+++.++.+..+|... .+++++|++++|... .++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5788888888888888655 468999999998765 56665678999999999999999876 778999999999999
Q ss_pred cCCCCCC-ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432 287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
++|.+.. |..+. ++|++|++++|+++.+|.. +.++++|++|++++|. ++. ++...++.+ +|++|++++|.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9999888 66554 8999999999999888764 7889999999999986 542 333447777 8999999988876
Q ss_pred ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
. .+..+. ++|++|++++|....++
T Consensus 186 ~--------------l~~~~~--~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 186 G--------------IPKDLP--ETLNELHLDHNKIQAIE 209 (332)
T ss_dssp S--------------CCSSSC--SSCSCCBCCSSCCCCCC
T ss_pred c--------------cCcccc--CCCCEEECCCCcCCccC
Confidence 2 223332 68888888888766554
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.2e-21 Score=204.87 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=87.0
Q ss_pred CCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccC
Q 002432 255 MRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTN 333 (922)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 333 (922)
..++++|++++|.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 466777777777777777777777777777777777666 6667777777777777777777777777777777777777
Q ss_pred CCCCCccCcchhCC---------CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 334 CFHLKVIAPNVIAS---------FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 334 ~~~l~~~p~~~l~~---------L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
|...+.+|.. ++. +++|++|++++|.+. ..+..++.+++|++|++++|....+
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------------SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------------CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------------cchHhhcCCCCCCEEEccCCCCCcC
Confidence 6656666654 333 666666666666554 2334556666666666666554433
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=5.2e-20 Score=198.78 Aligned_cols=170 Identities=21% Similarity=0.289 Sum_probs=127.1
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCL 286 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L 286 (922)
+++.+++.++.+..+|... .+++++|++++|... .++...|.++++|++|++++|.+..+ |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677888888877777644 367888888888766 56666668888888888888888876 778888888888888
Q ss_pred cCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCccc
Q 002432 287 DYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 287 ~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
++|.+.. |..+. ++|++|++++|.++.++. .+.++++|++|++++|. +.. +....++++++|++|++++|.+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 8888877 65554 788888888888887755 47888888888888875 542 33334788888888888888776
Q ss_pred ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
. .+..+. ++|++|++++|....
T Consensus 185 ~--------------l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 185 T--------------IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp S--------------CCSSCC--TTCSEEECTTSCCCE
T ss_pred c--------------CCcccc--ccCCEEECCCCcCCc
Confidence 2 222222 678888888776543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.1e-20 Score=201.70 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=141.9
Q ss_pred CcceEEEeecCCCC---CCCCCC-CCCCccEEEccC-CCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-cCchhhhccCC
Q 002432 207 KKCYAISWIDSSGG---ELPEGL-ECPQLELLLLSS-EHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-SLPSSIDLLVN 280 (922)
Q Consensus 207 ~~l~~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~ 280 (922)
.++++|++.++.+. .+|..+ ++++|++|++++ |.... .+|..+ .++++|++|++++|.+. .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 57899999999886 466655 889999999985 65542 567664 88999999999999988 67888999999
Q ss_pred CCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCc-ccchhhcCCC-CCCEEeccCCCCCC-ccCcchhCCCCCCCEEE
Q 002432 281 LQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIV-EFPEELGKLT-KLRLLDLTNCFHLK-VIAPNVIASFTRLEELY 355 (922)
Q Consensus 281 L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~~p~~~l~~L~~L~~L~ 355 (922)
|++|++++|.+.. |..+..+++|++|++++|+++ .+|..++++. +|++|++++|. +. .+|.. ++.++ |++|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEE
Confidence 9999999999874 788889999999999999888 7888888888 89999999886 54 55655 88887 99999
Q ss_pred ccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 356 MSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 356 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+++|.+.. ..+..+..+++|+.|++++|...
T Consensus 204 Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 204 LSRNMLEG-------------DASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSEEEE-------------CCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccC-------------cCCHHHhcCCCCCEEECCCCcee
Confidence 99988774 45577888889999998877643
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5.6e-22 Score=233.19 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=49.1
Q ss_pred CcEEEeeCCc-Cc--cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCc-----ccchhhcCC
Q 002432 258 LKVVDLTNMQ-LF--SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIV-----EFPEELGKL 323 (922)
Q Consensus 258 Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L 323 (922)
|++|++++|. +. .++..+..+++|++|+|++|.+.. + ..+..+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5666665554 11 122333355556666666555432 1 12334555566666555543 233334555
Q ss_pred CCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432 324 TKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (922)
Q Consensus 324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~ 358 (922)
++|++|++++|. +..+|.. ++++++|++|+++.
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECB
T ss_pred CCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccc
Confidence 556666665553 4444433 55555566655543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=200.09 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=131.8
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCC
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYS 289 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 289 (922)
..+.+++.+..+|... .++|++|++++|... .++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3666777777777644 247888888888765 56665668888888888888888876 456888888888888888
Q ss_pred CCCC-c-cccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432 290 TLGD-I-TIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 290 ~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
.+.. + ..++++++|++|++++|+++.+|. .+.++++|++|++++|..++.+++..++++++|++|++++|.+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 188 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-- 188 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--
Confidence 8877 4 347888888888888888887776 578888888888888755777766557888888888888887764
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
..+..++.+++|++|++++|....++
T Consensus 189 -----------~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 189 -----------YEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp -----------ECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred -----------cCHHHHhccccCCeecCCCCccccch
Confidence 34566777888888888877654433
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.1e-19 Score=193.95 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=129.9
Q ss_pred CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeC-CcCc-cCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTN-MQLF-SLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE 304 (922)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 304 (922)
.+++.|+++++.......+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 58999999999765111467654 8999999999995 8777 689999999999999999999974 78899999999
Q ss_pred EEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCC-ccCcchhCCCC-CCCEEEccCCcccccccccCCcccccccCccc
Q 002432 305 ILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLK-VIAPNVIASFT-RLEELYMSNCFVEWKVEDEGSSSKKSKASLDE 381 (922)
Q Consensus 305 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~~p~~~l~~L~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (922)
+|++++|.++ .+|..+.++++|++|++++|. +. .+|.. +++++ +|++|++++|.+.+ ..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-------------~~~~~ 193 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLTG-------------KIPPT 193 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEEE-------------ECCGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeeec-------------cCChH
Confidence 9999999998 788899999999999999987 55 77776 88998 99999999998875 44566
Q ss_pred CCCCCCCCEEEeeecCCC
Q 002432 382 LMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 382 l~~l~~L~~L~l~~~~~~ 399 (922)
+..++ |+.|++++|...
T Consensus 194 ~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp GGGCC-CSEEECCSSEEE
T ss_pred HhCCc-ccEEECcCCccc
Confidence 66676 999999887643
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.1e-18 Score=184.07 Aligned_cols=181 Identities=25% Similarity=0.326 Sum_probs=107.1
Q ss_pred ccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccC-chhhhccCC
Q 002432 205 ALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSL-PSSIDLLVN 280 (922)
Q Consensus 205 ~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~ 280 (922)
..+++++|++++|.+..++.. + .+++|++|++++|... .++...|.++++|++|++++|. +..+ |..+..+++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 345666666666666555532 2 5666666666666543 3433344666666666666665 5555 455666666
Q ss_pred CCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEcc
Q 002432 281 LQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMS 357 (922)
Q Consensus 281 L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~ 357 (922)
|++|++++|.+.. +..+.++++|++|++++|+++.+|.. ++++++|++|++++|. ++.+|...+.++++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 6666666666655 35566666666666666666655543 5666666666666653 556655446666666666666
Q ss_pred CCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 358 NCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
+|.+.. ..+..+..+++|+.|++++|....++
T Consensus 186 ~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 186 QNRVAH-------------VHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCE-------------ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccc-------------cCHhHccCcccccEeeCCCCcCCcCC
Confidence 665553 23455566666666666666554433
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.4e-21 Score=227.93 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=73.2
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCC-cCcc--CchhhhccCCCCEEEccCCCCCC--ccc----c
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM-QLFS--LPSSIDLLVNLQTLCLDYSTLGD--ITI----I 297 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~l~~--p~~----i 297 (922)
.+++|+.|+++++.... ..+..+...+++|++|++++| .+.. ++..+.++++|++|++++|.+.. +.. .
T Consensus 103 ~~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 45667777777664321 222333225667777777766 4443 44444566777777777776543 222 2
Q ss_pred CCCCcCCEEEeecCC--Cc--ccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432 298 GKLKNLEILSLIESD--IV--EFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359 (922)
Q Consensus 298 ~~L~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~ 359 (922)
..+++|++|++++|. +. .++.-+.++++|++|++++|..++.++.. +.++++|++|++..+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 255677777777664 22 22222345677777777766545555443 566677777765544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=5.8e-19 Score=188.37 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=93.1
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC---chhhhccCCCCEEEcc
Q 002432 211 AISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL---PSSIDLLVNLQTLCLD 287 (922)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~ 287 (922)
.++..++.+..+|... .++|+.|++++|... .+|..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3444455555555432 245666666665544 45555555666666666666655533 4455556666666666
Q ss_pred CCCCCC-ccccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
+|.+.. |..+..+++|++|++++|+++.++. .+.++++|++|++++|. +...+...++++++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence 666555 4555566666666666665555542 45566666666666654 444433335556666666666655431
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
...+..+..+++|++|++++|..
T Consensus 165 -----------~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 165 -----------NFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp -----------GEECSCCTTCTTCCEEECTTSCC
T ss_pred -----------ccchhHHhhCcCCCEEECCCCCc
Confidence 01234455555666666655543
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=6.7e-21 Score=224.21 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=53.7
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-c---Cch------------hhhccCCCCEEEccCCCCCC--
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-S---LPS------------SIDLLVNLQTLCLDYSTLGD-- 293 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~---lp~------------~i~~L~~L~~L~L~~~~l~~-- 293 (922)
+.+++..+.. ..|..++.++++|+.|+++++... . .|. ....+++|++|++++|.+..
T Consensus 46 ~~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 121 (594)
T 2p1m_B 46 RKVFIGNCYA----VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121 (594)
T ss_dssp CEEEESSTTS----SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH
T ss_pred eEEeeccccc----cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHH
Confidence 4556554432 456677788999999999987521 1 111 12345556666666655543
Q ss_pred ccccC-CCCcCCEEEeecC-CCcc--cchhhcCCCCCCEEeccCCC
Q 002432 294 ITIIG-KLKNLEILSLIES-DIVE--FPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 294 p~~i~-~L~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~~ 335 (922)
+..+. .+++|++|++++| .++. ++..+.++++|++|++++|.
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 33333 3555555555555 3332 33333455555555555543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=186.40 Aligned_cols=195 Identities=21% Similarity=0.207 Sum_probs=161.6
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+.++..+|. ...+++++|++.+|.+..++... ++++|++|++++|.....+.++..+ ..+++|++|++++|.+.
T Consensus 14 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 14 CNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp CCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEE
T ss_pred cCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccc
Confidence 34445556655 45679999999999999998753 8999999999999765222234554 67999999999999999
Q ss_pred cCchhhhccCCCCEEEccCCCCCC-c--cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCc--cCcc
Q 002432 270 SLPSSIDLLVNLQTLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKV--IAPN 343 (922)
Q Consensus 270 ~lp~~i~~L~~L~~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p~~ 343 (922)
.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.. |..+.++++|++|++++|. +.. +|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH
Confidence 999999999999999999999877 4 5799999999999999999855 5568999999999999986 554 5655
Q ss_pred hhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 344 VIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 344 ~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
++++++|++|++++|.+.. ..+..+..+++|+.|++++|....++.
T Consensus 171 -~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 171 -FTELRNLTFLDLSQCQLEQ-------------LSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp -CTTCTTCCEEECTTSCCCE-------------ECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred -HhhCcCCCEEECCCCCcCC-------------cCHHHhcCCCCCCEEECCCCccCccCh
Confidence 8999999999999998874 345778899999999999888665443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.8e-18 Score=195.27 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=140.8
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD 287 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~ 287 (922)
.+.++..+..+..+|... .++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777777777777644 268899999988776 566666788999999999999988764 678889999999999
Q ss_pred CCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
+|.+.. + ..|..+++|++|++++|+++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999887 4 568889999999999999888765 578899999999998777888888778889999999999887763
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
+..+..+++|+.|++++|....+
T Consensus 211 --------------~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 211 --------------MPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp --------------CCCCTTCTTCCEEECTTSCCSEE
T ss_pred --------------cccccccccccEEECcCCcCccc
Confidence 24577888899999888876543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=193.72 Aligned_cols=174 Identities=23% Similarity=0.330 Sum_probs=137.7
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD 287 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~ 287 (922)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567777777777776543 67888888888766 566666788889999999998888764 678888889999999
Q ss_pred CCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
+|.++. + ..|..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 888887 4 568888899999999888887765 578888899999988777888887778888889999988887762
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
+..+..+++|+.|++++|....+
T Consensus 200 --------------~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 200 --------------IPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp --------------CCCCTTCSSCCEEECTTSCCCEE
T ss_pred --------------ccccCCCcccCEEECCCCccCcc
Confidence 23577888888888887765543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=192.96 Aligned_cols=190 Identities=21% Similarity=0.296 Sum_probs=163.3
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+..+..+|. ....+++.|++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|+|++|.++
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEEECCSSCCS
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEEECCCCcCC
Confidence 44455666664 5668899999999999887643 3 8999999999999876 677777899999999999999999
Q ss_pred cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecC-CCcccch-hhcCCCCCCEEeccCCCCCCccCcch
Q 002432 270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIES-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (922)
.+|. .+..+++|++|++++|.+.. + ..|.++++|++|++++| .+..++. .+.++++|++|++++|. +..+|.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--
Confidence 9876 69999999999999999988 4 68999999999999995 6777766 58999999999999985 889985
Q ss_pred hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+..+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSA-------------IRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CTTCSSCCEEECTTSCCCE-------------ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCcccCEEECCCCccCc-------------cChhhhccCccCCEEECCCCceeEE
Confidence 8999999999999998874 4467889999999999998876543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.5e-18 Score=192.89 Aligned_cols=190 Identities=20% Similarity=0.254 Sum_probs=161.9
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
..+.++..+|. ...++++.|++++|.+..++.. + ++++|+.|++++|.+. .++...|.++++|++|+|++|.++
T Consensus 61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCC
Confidence 44455666654 5568999999999999877543 3 8999999999999876 677677799999999999999999
Q ss_pred cCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecC-CCcccch-hhcCCCCCCEEeccCCCCCCccCcch
Q 002432 270 SLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIES-DIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 270 ~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (922)
.+|. .++.+++|++|++++|.+.. + ..|.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-- 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-- 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--
Confidence 9875 58899999999999999988 4 68999999999999995 7777776 48999999999999986 888875
Q ss_pred hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCC
Q 002432 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNAL 401 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (922)
+..+++|++|++++|.+.. ..+..+..+++|+.|++++|....+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPE-------------IRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTCTTCCEEECTTSCCSE-------------ECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccEEECcCCcCcc-------------cCcccccCccCCCEEEeCCCcCceE
Confidence 8999999999999998875 4467889999999999998876543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=5e-18 Score=178.93 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=147.5
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 288 (922)
+.++..++.+..+|... .++|+.|++++|.+. .++...|..+++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67788888888887643 568999999999876 67777779999999999999999977 77899999999999999
Q ss_pred CC-CCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 289 ST-LGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 289 ~~-l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
|. +.. +..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~- 167 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS- 167 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-
Confidence 97 776 57899999999999999999977 5568999999999999986 888887778999999999999998773
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
.....+..+++|+.|++++|....
T Consensus 168 ------------~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 168 ------------VPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp ------------ECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ------------cCHHHhcCccccCEEECCCCcccc
Confidence 223458889999999999887543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.5e-17 Score=190.31 Aligned_cols=256 Identities=19% Similarity=0.133 Sum_probs=179.4
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 287 (922)
+++.|+++++.+..+|..+. ++|+.|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~---~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS---CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC---CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 46788888888888887554 78999999988765 6765 57889999999999988887 67889999999
Q ss_pred CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
+|.+.. |. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~--- 175 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS--- 175 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC---
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC---
Confidence 998888 55 678899999999988888864 4889999999885 777765 24678889998887762
Q ss_pred ccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEEEccCCCCCCccccccccccccccccccccc
Q 002432 367 DEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKILIGDRSFEPPVILSKDWFRISRSHFLILDHQ 446 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 446 (922)
.+ ..+++|+.|++++|....+|...
T Consensus 176 -----------l~---~~~~~L~~L~Ls~N~l~~l~~~~----------------------------------------- 200 (622)
T 3g06_A 176 -----------LP---MLPSGLQELSVSDNQLASLPTLP----------------------------------------- 200 (622)
T ss_dssp -----------CC---CCCTTCCEEECCSSCCSCCCCCC-----------------------------------------
T ss_pred -----------Cc---ccCCCCcEEECCCCCCCCCCCcc-----------------------------------------
Confidence 22 44678888998888776555421
Q ss_pred cceeeEecccccchhhhcccCCcceeEEeeccccCccccccccccccccCCcEEEEecCCCceEeecCcccccCcccccc
Q 002432 447 SLRMLKLKLNWKTICLRKLQGIRKVEYLCLDKFQGVKNILFELDTQGFSQLKHLLVQNNPDLLFIVDSREIVDCDAFPLL 526 (922)
Q Consensus 447 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L 526 (922)
++|+.|++.++.. ..++ ..+++|+.|+++++. ++.++ ..+++|
T Consensus 201 ----------------------~~L~~L~L~~N~l-~~l~-----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L 243 (622)
T 3g06_A 201 ----------------------SELYKLWAYNNRL-TSLP-----ALPSGLKELIVSGNR-LTSLP--------VLPSEL 243 (622)
T ss_dssp ----------------------TTCCEEECCSSCC-SSCC-----CCCTTCCEEECCSSC-CSCCC--------CCCTTC
T ss_pred ----------------------chhhEEECcCCcc-cccC-----CCCCCCCEEEccCCc-cCcCC--------CCCCcC
Confidence 2333333333211 1111 124566777776662 22221 345667
Q ss_pred cccccccccccccccccccccccccCcCeeEEecCCCccccccccccccCCCccEEEEcccccc
Q 002432 527 ELLSLQNLINLKRICVDRLSTESFSELRTMKVENCDELSNIFVLSTTKCLPSLQRIAVIKCNKM 590 (922)
Q Consensus 527 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 590 (922)
+.|+++++ .++.++. .+++|+.|++.+| +++.++ ..+..+++|+.|++++++-.
T Consensus 244 ~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 244 KELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCCCC
T ss_pred cEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCCCC
Confidence 77777765 3444422 4678888888887 566663 34677888999999887643
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=187.06 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=158.7
Q ss_pred cCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432 193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS 270 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~ 270 (922)
.+.++..+|. ...+++++|++++|.+..++.. + ++++|++|++++|... .++...|.++++|++|++++|.++.
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCc
Confidence 3445556655 4567999999999999888763 3 8999999999999776 5666667999999999999999999
Q ss_pred Cchh-hhccCCCCEEEccCCCCCC-cc--ccCCCCcCCEEEeecC-CCccc-chhhcCCCCCCEEeccCCCCCCccCcch
Q 002432 271 LPSS-IDLLVNLQTLCLDYSTLGD-IT--IIGKLKNLEILSLIES-DIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 271 lp~~-i~~L~~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~L~~~-~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (922)
+|.. ++++++|++|++++|.+.. |. .+.++++|++|++++| .++.+ |..++++++|++|++++|. +..+++..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH
Confidence 9875 8999999999999999988 54 7999999999999999 57776 4578999999999999986 77775555
Q ss_pred hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
++++++|++|++++|.+.. .....+..+++|+.|++++|....++
T Consensus 194 l~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHIL-------------LLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTCSEEEEEEEECSCSTT-------------HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred HhccccCCeecCCCCcccc-------------chhhhhhhcccccEEECCCCcccccc
Confidence 9999999999999998752 11122345789999999999876554
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.9e-17 Score=191.24 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=60.0
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEe
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSL 308 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L 308 (922)
++++|++++|... .+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++. |. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~---~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT---TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS---CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC---ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3555555555544 4554331 455566666665555554 34555555555555555 33 4555555555
Q ss_pred ecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 309 IESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 309 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
++|+++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.+.
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA 154 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC
Confidence 5555555554 44555555555553 5555442 255555555555443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-17 Score=172.37 Aligned_cols=186 Identities=24% Similarity=0.334 Sum_probs=119.2
Q ss_pred CCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc
Q 002432 195 GDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP 272 (922)
Q Consensus 195 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp 272 (922)
..+..+|. ....++++|++++|.+..++.. + ++++|++|++++|... .++..+|.++++|++|++++|.+..+|
T Consensus 26 ~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 26 KKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 33444433 3345667777777777666542 2 6677777777776655 566666666777777777777777665
Q ss_pred h-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCC
Q 002432 273 S-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASF 348 (922)
Q Consensus 273 ~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L 348 (922)
. .+..+++|++|++++|.+.. +..|..+++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 3 45667777777777777665 34566777777777777777766554 5667777777777764 666666556667
Q ss_pred CCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 349 TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 349 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
++|++|++++|.+.. .....+..+++|+.|++++|..
T Consensus 181 ~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 181 TELKTLKLDNNQLKR-------------VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCEEECCCCcCCc-------------CCHHHhccccCCCEEEecCCCe
Confidence 777777777776652 2223456666777777776653
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2e-17 Score=173.97 Aligned_cols=181 Identities=22% Similarity=0.245 Sum_probs=154.4
Q ss_pred cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432 206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 285 (922)
..+++.+++.++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 4578889999999988887653 68999999999876 56666679999999999999999988764 7899999999
Q ss_pred ccCCCCCC-ccccCCCCcCCEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
+++|.+.. |..+..+++|++|++++|+++.+| ..|.++++|++|++++|. +..+|.+.+..+++|++|++++|.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc
Confidence 99999988 888899999999999999999887 458999999999999986 888888878899999999999998873
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF 405 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (922)
.....+..+++|+.|++++|....+|..+
T Consensus 163 -------------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 163 -------------LPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -------------cCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 22345678899999999999988888764
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.6e-17 Score=170.64 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=161.0
Q ss_pred CcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh-hhccCCCCEEE
Q 002432 207 KKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS-IDLLVNLQTLC 285 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~ 285 (922)
...+.++++++.+..+|.... ++++.|++++|... .++...|.++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 356789999999988887553 68999999999876 67777779999999999999999999765 58899999999
Q ss_pred ccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 286 LDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 286 L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+++|.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc
Confidence 99999988 4 6789999999999999999988654 7999999999999986 88998877899999999999999887
Q ss_pred ccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc--cccccceeE
Q 002432 363 WKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFK 414 (922)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~ 414 (922)
. .....+..+++|+.|++++|....++... .+++|+.+.
T Consensus 171 ~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 171 R-------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp C-------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred E-------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 4 33356888999999999999988777652 344444443
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.3e-20 Score=212.14 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=100.2
Q ss_pred CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--cccc-CCC
Q 002432 229 PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--ITII-GKL 300 (922)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p~~i-~~L 300 (922)
++|++|+++++.... .-...+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 356667776665431 122334577788888888888776 456677777888888888888765 3222 234
Q ss_pred C----cCCEEEeecCCCc-----ccchhhcCCCCCCEEeccCCCCCCccCcchh-----CCCCCCCEEEccCCccccccc
Q 002432 301 K----NLEILSLIESDIV-----EFPEELGKLTKLRLLDLTNCFHLKVIAPNVI-----ASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 301 ~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l-----~~L~~L~~L~L~~~~~~~~~~ 366 (922)
. +|++|++++|+++ .+|..+.++++|++|++++|. ++......+ ...++|++|++++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-- 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-- 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--
Confidence 4 6888888888777 456777888888888888875 543221112 2356788888888876530
Q ss_pred ccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 367 DEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
........+..+++|++|++++|..
T Consensus 158 -------~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 -------SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -------GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred -------HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 0011234455567788888776653
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2e-19 Score=192.57 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=75.6
Q ss_pred CChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCC
Q 002432 247 IPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTK 325 (922)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 325 (922)
.+..++..+++|++|++++|.++.++ ..+.++++|++|++++|.+.....+..+++|++|++++|+++.+|. .++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCC
Confidence 33444555566666666666666553 4566666666666666666552226666666666666666655542 356
Q ss_pred CCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 326 LRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 326 L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
|++|++++|. +..++.. .+++|++|++++|.+.. .....++.+++|+.|++++|...
T Consensus 101 L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 101 IETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEEEECTTSCCC
T ss_pred cCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCCEEECCCCCCC
Confidence 6666666654 5555433 35566666666665553 22234555566666666655543
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2.8e-17 Score=168.09 Aligned_cols=196 Identities=15% Similarity=0.223 Sum_probs=165.5
Q ss_pred CCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCC-CcCCCCCChHHhhCCCCCcEEEeeC-CcCccCc
Q 002432 197 VWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEH-SSVDVNIPQRFFTGMRELKVVDLTN-MQLFSLP 272 (922)
Q Consensus 197 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp 272 (922)
+..+|. ...+++.|++.+|.+..++.. + .+++|++|++++|. .. .++...|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~---~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ---QLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC---EECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc---eeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 555665 677999999999999888873 3 89999999999996 55 67877789999999999999 9999886
Q ss_pred -hhhhccCCCCEEEccCCCCCC-ccccCCCCcCC---EEEeecC-CCcccchh-hcCCCCCC-EEeccCCCCCCccCcch
Q 002432 273 -SSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLE---ILSLIES-DIVEFPEE-LGKLTKLR-LLDLTNCFHLKVIAPNV 344 (922)
Q Consensus 273 -~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~~p~~~ 344 (922)
..+.++++|++|++++|.+.. |. +..+++|+ +|++++| +++.+|.. +.++++|+ +|++++|. +..+|...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhh
Confidence 578999999999999999998 55 88899998 9999999 99988765 89999999 99999986 88999875
Q ss_pred hCCCCCCCEEEccCCc-ccccccccCCcccccccCcccCCCC-CCCCEEEeeecCCCCCCccccccccceeE
Q 002432 345 IASFTRLEELYMSNCF-VEWKVEDEGSSSKKSKASLDELMPL-PRLTTLEIAVENDNALPEGFFVRELERFK 414 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 414 (922)
+.. ++|++|++++|. +.. .....+..+ ++|+.|++++|....+|.. .+.+|+.|.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEE
T ss_pred cCC-CCCCEEEcCCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceee
Confidence 555 899999999995 763 234567888 9999999999998888876 555555554
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=8.2e-17 Score=165.89 Aligned_cols=175 Identities=23% Similarity=0.291 Sum_probs=151.3
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCL 286 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L 286 (922)
..+++++.++.+..+|.... ++++.|++++|... .++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC---ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678899999988887654 68999999999876 666666799999999999999999875 46899999999999
Q ss_pred cCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 287 DYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 287 ~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
++|.+.. + ..|..+++|++|++++|+++.+|.. +.++++|++|++++|. +..+|...++++++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999988 4 6789999999999999999988776 6899999999999985 889988769999999999999998874
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
.....+..+++|+.|++++|....
T Consensus 170 -------------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 -------------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 334578889999999999998654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.8e-17 Score=170.51 Aligned_cols=201 Identities=21% Similarity=0.244 Sum_probs=162.0
Q ss_pred CCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc
Q 002432 195 GDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP 272 (922)
Q Consensus 195 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp 272 (922)
..+..+|. ...+++++|++++|.+..++.. + ++++|++|++++|... .++...|.++++|++|++++|.+..++
T Consensus 17 ~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC---ccCHHHccCCcCCCEEECCCCccCccC
Confidence 34444554 4567899999999999888753 3 8999999999999776 677767799999999999999999775
Q ss_pred -hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcc--cchhhcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432 273 -SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVE--FPEELGKLTKLRLLDLTNCFHLKVIAPNVIAS 347 (922)
Q Consensus 273 -~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (922)
..+.++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++|. +..++...+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhh
Confidence 679999999999999999987 3 579999999999999999986 68899999999999999986 88887665777
Q ss_pred CCCCC----EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccc--cccccceeE
Q 002432 348 FTRLE----ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGF--FVRELERFK 414 (922)
Q Consensus 348 L~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~ 414 (922)
+++|+ +|++++|.+.. .+.......+|+.|++++|....+|... .+++|+.+.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~--------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNF--------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCE--------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred hhhccccceeeecCCCcccc--------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 77776 89999998873 2233333448999999999988877653 344444443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=8.7e-17 Score=170.90 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=144.5
Q ss_pred ccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 205 ALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 205 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
..+++++|++.++.+..++....+++|++|++++|... .++. |..+++|++|++++|.+..+| .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 35678888888888877776557888888888888765 5555 588888888888888888776 58888888888
Q ss_pred EccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccc
Q 002432 285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
++++|.+.....+..+++|++|++++|.++.++. ++++++|++|++++|. +..++. ++++++|++|++++|.+..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc-
Confidence 8888888874458888888888888888887765 8888888888888875 777765 7888888888888887763
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEEE
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKIL 416 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 416 (922)
+..+..+++|+.|++++|....++....+++|+.+.+.
T Consensus 188 --------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 188 --------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp --------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred --------------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence 22367788888888888887766643355666665543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.8e-17 Score=170.52 Aligned_cols=175 Identities=20% Similarity=0.304 Sum_probs=124.3
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCC
Q 002432 212 ISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYST 290 (922)
Q Consensus 212 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 290 (922)
++..+..+..+|.... ++|++|++++|... .++...|.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCC---EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCccc---ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444455566666442 57888888888765 5666566888888888888888887654 68888888888888888
Q ss_pred CCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCCcccccc
Q 002432 291 LGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 291 l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
+.. +..|.++++|++|++++|.++.++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~-- 163 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS-- 163 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE--
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCc--
Confidence 877 4678888888888888888887765 57888888888888875 655 4554 8888888888888887763
Q ss_pred cccCCcccccccCcccCCCCCCCC-EEEeeecCCCCCC
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLT-TLEIAVENDNALP 402 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 402 (922)
++ ...+..+..++.|. .|++++|....++
T Consensus 164 -~~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 164 -IY-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp -EC-------GGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred -CC-------HHHhhhhhhccccceeeecCCCcccccC
Confidence 10 01222333333333 6777777655433
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1e-16 Score=168.54 Aligned_cols=186 Identities=18% Similarity=0.160 Sum_probs=160.0
Q ss_pred cCCCCCCCCCccccCcceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc
Q 002432 193 RNGDVWEWPDEDALKKCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS 270 (922)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~ 270 (922)
.+.++..+|. ...++++.|++++|.+..++.. ..+++|+.|++++|.+. .++.. ..+++|++|++++|.+..
T Consensus 18 ~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~--~~l~~L~~L~Ls~N~l~~ 91 (290)
T 1p9a_G 18 DKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVD--GTLPVLGTLDLSHNQLQS 91 (290)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEECC--SCCTTCCEEECCSSCCSS
T ss_pred CCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---cccCC--CCCCcCCEEECCCCcCCc
Confidence 3445555554 4567899999999999777543 38999999999999876 45442 789999999999999999
Q ss_pred CchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432 271 LPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS 347 (922)
Q Consensus 271 lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (922)
+|..+..+++|++|++++|.++. | ..|.++++|++|++++|+++.+|.+ +..+++|++|++++|. ++.+|.+.+.+
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 170 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcC
Confidence 99999999999999999999998 4 7899999999999999999988766 6899999999999986 89999887899
Q ss_pred CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 348 FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 348 L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+++|++|++++|.+. ..+..+....+|+.|++++|...
T Consensus 171 l~~L~~L~L~~N~l~--------------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 171 LENLDTLLLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTCCEEECCSSCCC--------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCCCEEECCCCcCC--------------ccChhhcccccCCeEEeCCCCcc
Confidence 999999999999887 45667777889999999998754
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=5.5e-18 Score=181.34 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=74.0
Q ss_pred cceEEEeecCCCCCCCCC--CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432 208 KCYAISWIDSSGGELPEG--LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 285 (922)
++++|++++|.+..+++. ..+++|++|++++|... .+++ |..+++|++|++++|.++.+|. .++|++|+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE---EEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC---cchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 455566666655554421 15555666666555443 2222 3555566666666665554432 25556666
Q ss_pred ccCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchh-CCCCCCCEEEccCCccc
Q 002432 286 LDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVI-ASFTRLEELYMSNCFVE 362 (922)
Q Consensus 286 L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l-~~L~~L~~L~L~~~~~~ 362 (922)
+++|.+.. +.. .+++|++|++++|+++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+.
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc
Confidence 66655554 221 24555666666665554433 45555566666666553 444433223 24555666666655554
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=2.4e-19 Score=203.76 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=124.5
Q ss_pred cCcceEEEeecCCCCCCCCC--C-CCCCccEEEccCCCCcCC--CCCChHHhhCCCCCcEEEeeCCcCccC-chhh-hcc
Q 002432 206 LKKCYAISWIDSSGGELPEG--L-ECPQLELLLLSSEHSSVD--VNIPQRFFTGMRELKVVDLTNMQLFSL-PSSI-DLL 278 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~~--~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i-~~L 278 (922)
++++++|+++++.+...+.. + .+++|++|++++|..... ..++ ..+..+++|++|++++|.+... +..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35688899998887544321 2 678899999998864310 0122 3457889999999999988742 3333 335
Q ss_pred C----CCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCccc-chhh-----cCCCCCCEEeccCCCCCCccC-
Q 002432 279 V----NLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIVEF-PEEL-----GKLTKLRLLDLTNCFHLKVIA- 341 (922)
Q Consensus 279 ~----~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~~l-p~~i-----~~L~~L~~L~l~~~~~l~~~p- 341 (922)
. +|++|++++|.+.. +..+.++++|++|++++|.++.. +..+ ....+|++|++++|. ++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 5 69999999999873 57788999999999999987732 2222 236689999999985 55432
Q ss_pred ---cchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCC-----CCCCCCEEEeeecCCCC
Q 002432 342 ---PNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELM-----PLPRLTTLEIAVENDNA 400 (922)
Q Consensus 342 ---~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~ 400 (922)
...+..+++|++|++++|.+.. ..+..+. ..++|++|+++++....
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~-------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINE-------------AGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHH-------------HHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHHHHhhCCCCCEEECcCCCcch-------------HHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 1236778999999999988653 1112221 35689999999887654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.3e-16 Score=164.59 Aligned_cols=177 Identities=24% Similarity=0.263 Sum_probs=152.7
Q ss_pred cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCC
Q 002432 204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQ 282 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 282 (922)
...++++.|.+.++.+..++....+++|++|++++|... .++ .+..+++|++|++++|.++.+|. .++++++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~---~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC---CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC---Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 446789999999999988887668999999999999865 443 35899999999999999998865 579999999
Q ss_pred EEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCC
Q 002432 283 TLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNC 359 (922)
Q Consensus 283 ~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~ 359 (922)
+|++++|.+.. + ..++.+++|++|++++|+++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence 99999999988 4 5689999999999999999988765 6899999999999986 88888876899999999999999
Q ss_pred cccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 360 FVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
.+.. .....++.+++|+.|++++|...
T Consensus 192 ~l~~-------------~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 192 QLKS-------------VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSC-------------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-------------cCHHHHhCCcCCCEEEccCCCcc
Confidence 8874 33455788999999999998744
No 80
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=6.8e-17 Score=207.40 Aligned_cols=169 Identities=18% Similarity=0.253 Sum_probs=135.8
Q ss_pred CCcceEeCCC-CCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCC
Q 002432 2 GSEANFSIEI-LNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTE 80 (922)
Q Consensus 2 ~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~ 80 (922)
+...+|++++ |+++|||+||+++++. ..+++++++++|+++|+|+||||+++|+.|+.++ ..|+++++.+.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 4567899996 9999999999999943 2345677899999999999999999999999884 469999888852221
Q ss_pred -C---CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHH
Q 002432 81 -N---NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHEL 154 (922)
Q Consensus 81 -~---~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L 154 (922)
. ....+.+.+..++.+||+.||++ .|.||+|||+| +++.|++ .++.+|.+++ +++ .+++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-------~~~----~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET-------EEV----EDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------HHH----HHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------HHH----HHHHHHH
Confidence 0 11112345999999999999999 79999999999 7899998 9999997762 333 4569999
Q ss_pred Hhhcceecccc--cceEEecHHHHHHHHHHHccc
Q 002432 155 KDSCLLLEGYS--CREFSMHDVVHDVAILIACGE 186 (922)
Q Consensus 155 ~~~~l~~~~~~--~~~~~mhdli~dl~~~~~~~e 186 (922)
+++||++.... ...|+|||+||+++...+.+|
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999986532 235999999999999987665
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.6e-16 Score=165.31 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=161.4
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (922)
..+..+..++.....++++.|++++|.+..++....+++|++|++++|... .++ .|..+++|++|++++|.++.+
T Consensus 48 l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~---~~~--~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK---NVS--AIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS---CCG--GGTTCTTCCEEECTTSCCCCC
T ss_pred eeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC---Cch--hhcCCCCCCEEECCCCCCCCc
Confidence 344445555555667899999999999988888559999999999999865 454 268999999999999999998
Q ss_pred chhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC
Q 002432 272 PSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL 351 (922)
Q Consensus 272 p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L 351 (922)
|. +..+++|++|++++|.+.....++.+++|++|++++|+++.++. +.++++|++|++++|. +..++. +..+++|
T Consensus 123 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNL 197 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCC
Confidence 76 99999999999999999985449999999999999999998876 9999999999999986 888876 8899999
Q ss_pred CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 352 EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 352 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
++|++++|.+.. . ..+..+++|+.|++++|.....|..
T Consensus 198 ~~L~L~~N~l~~--------------~-~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 198 IEVHLKNNQISD--------------V-SPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CEEECTTSCCCB--------------C-GGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CEEEccCCccCc--------------c-ccccCCCCCCEEEccCCeeecCCee
Confidence 999999998873 2 2488999999999999987665543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.9e-16 Score=166.67 Aligned_cols=175 Identities=26% Similarity=0.317 Sum_probs=154.0
Q ss_pred cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432 204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT 283 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 283 (922)
...++++.|++.+|.+..++....+++|++|++++|... .++. +.++++|++|++++|.+..+|. ++.+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 346789999999999988887668999999999999876 5655 6999999999999999998765 999999999
Q ss_pred EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|++++|.+..++.+..+++|++|++++|+++.+ ..+.++++|++|++++|. +..+++ ++.+++|++|++++|.+..
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC
Confidence 999999999977899999999999999999988 579999999999999986 888876 8999999999999998863
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
+..+..+++|+.|++++|.....|.
T Consensus 193 ---------------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 ---------------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ---------------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ---------------ChhhccCCCCCEEECcCCcccCCcc
Confidence 3458899999999999998655443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.4e-16 Score=162.94 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc-CccCch-hhhccCCCCEEEccC-CCCCC-
Q 002432 218 SGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ-LFSLPS-SIDLLVNLQTLCLDY-STLGD- 293 (922)
Q Consensus 218 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~- 293 (922)
.+..+|. -..+|+.|++++|... .++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred CccccCC--CCCcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 3666666 2347888888888765 6676667888888888888886 777764 677888888888887 77776
Q ss_pred c-cccCCCCcCCEEEeecCCCcccchhhcCCCCCC---EEeccCCCCCCccCcchhCCCCCCC-EEEccCCccc
Q 002432 294 I-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLR---LLDLTNCFHLKVIAPNVIASFTRLE-ELYMSNCFVE 362 (922)
Q Consensus 294 p-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~~l~~L~~L~-~L~L~~~~~~ 362 (922)
+ ..|.++++|++|++++|+++.+|. +.++++|+ +|++++|..++.+|...+.++++|+ +|++++|.+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 3 567788888888888888888776 77777777 8888887347777776677888888 8888877665
No 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.68 E-value=6.4e-17 Score=187.62 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=116.5
Q ss_pred eEeCC------CCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCC-CHHHHHHHHHHhcCC
Q 002432 6 NFSIE------ILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKT-ESECWKNALHELRMP 78 (922)
Q Consensus 6 ~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~-~~~~W~~~l~~~~~~ 78 (922)
+|+++ +|+++|||+||+++.+.. ..++..+| |+|+||||+++|+.|+.+. +.++|+.+
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------- 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------- 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence 57777 999999999999997442 22344444 9999999999999999885 67888753
Q ss_pred CCCCCccchHHHHHHHHHHHhcCCchhH-HHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Q 002432 79 TENNFHRELGKAYTAIKLSYDALKGEQL-KKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELK 155 (922)
Q Consensus 79 ~~~~~~~~~~~~~~~l~lsY~~L~~~~l-k~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~ 155 (922)
..+.+..+|.+||+.||++ . |.||+|||+| +++.|.+ .++.+|+++| .++ +.++|++|+
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG------eed----Ae~~L~eLv 412 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSD----VMVVVNKLH 412 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHH----HHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHH----HHHHHHHHH
Confidence 1245999999999999998 8 9999999999 6899988 8999999998 123 344699999
Q ss_pred hhcceecccccceEEecHHHHHHHH
Q 002432 156 DSCLLLEGYSCREFSMHDVVHDVAI 180 (922)
Q Consensus 156 ~~~l~~~~~~~~~~~mhdli~dl~~ 180 (922)
++||++..+....|+|||++++++.
T Consensus 413 dRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 413 KYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp TSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred hhCCEEEeCCCCEEEehHHHHHHhc
Confidence 9999997655678999999999763
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.7e-16 Score=167.80 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=114.4
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHh-hCCCCCcEEEeeCCcCccCchhhhcc-----CCCCEEEccCCCCCC--ccccC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFF-TGMRELKVVDLTNMQLFSLPSSIDLL-----VNLQTLCLDYSTLGD--ITIIG 298 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~--p~~i~ 298 (922)
++++|++|++++|.... .+|..+| ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+.. +..|+
T Consensus 93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 36778888888776542 5666543 77888888888888888777777776 788888888888776 37788
Q ss_pred CCCcCCEEEeecCCCcc---cchhh--cCCCCCCEEeccCCCCCCc---cCcchhCCCCCCCEEEccCCcccccccccCC
Q 002432 299 KLKNLEILSLIESDIVE---FPEEL--GKLTKLRLLDLTNCFHLKV---IAPNVIASFTRLEELYMSNCFVEWKVEDEGS 370 (922)
Q Consensus 299 ~L~~L~~L~L~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~ 370 (922)
++++|++|++++|++.. +|..+ +++++|++|++++|. ++. ++...+.++++|++|++++|.+..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------- 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRD------- 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCS-------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCc-------
Confidence 88888888888887653 34455 778888888888875 663 333434577888888888887763
Q ss_pred cccccccC-cccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 371 SSKKSKAS-LDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 371 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
.. ...+..+++|+.|++++|....+|..
T Consensus 243 ------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 243 ------AAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp ------SCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred ------ccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 11 23455667888888887776665554
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.5e-17 Score=186.72 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCC
Q 002432 257 ELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 257 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 335 (922)
+|++|+|++|.+..+ |..|+.+++|++|+|++|.+.....++.+++|++|++++|.++.+|. .++|++|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCc
Confidence 344444444444433 23344444444444444444431114444444444444444443332 1344444444442
Q ss_pred CCCccCcchhCCCCCCCEEEccCCccc
Q 002432 336 HLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+..++.. .+++|++|++++|.+.
T Consensus 111 -l~~~~~~---~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 111 -ISRVSCS---RGQGKKNIYLANNKIT 133 (487)
T ss_dssp -CCCEEEC---CCSSCEEEECCSSCCC
T ss_pred -CCCCCcc---ccCCCCEEECCCCCCC
Confidence 3333322 2334444444444433
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=1.6e-15 Score=156.16 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=145.4
Q ss_pred EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCC-C-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc
Q 002432 190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEG-L-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ 267 (922)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 267 (922)
+...+..+..+|. .....++.|++++|.+..++.. + ++++|++|++++|.+. .++...|..+++|++|++++|.
T Consensus 19 l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 19 VDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSC
T ss_pred EecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCCEEECCCCc
Confidence 3344455555554 4567899999999999887664 3 8999999999999876 6777777999999999999999
Q ss_pred CccCc-hhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcc
Q 002432 268 LFSLP-SSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPN 343 (922)
Q Consensus 268 i~~lp-~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~ 343 (922)
++.+| ..+..+++|++|++++|.+.. + ..+.++++|++|++++|+++.+|. .++++++|++|++++|. +..++..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHH
Confidence 99886 467899999999999999998 4 557999999999999999998877 58999999999999986 8888887
Q ss_pred hhCCCCCCCEEEccCCcccc
Q 002432 344 VIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 344 ~l~~L~~L~~L~L~~~~~~~ 363 (922)
.+.++++|++|++++|.+..
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCT
T ss_pred HHhCCCCCCEEEeeCCceeC
Confidence 79999999999999998763
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.5e-16 Score=168.90 Aligned_cols=227 Identities=17% Similarity=0.136 Sum_probs=178.2
Q ss_pred CCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCC
Q 002432 652 LPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPP 731 (922)
Q Consensus 652 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 731 (922)
++++++|++++|+|+.++...+ ..+++|++|+|++|..++.++ ...+.++++++++.+.++++++.+... .
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~-------~ 99 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE-------A 99 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-------S
T ss_pred CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-------h
Confidence 4689999999999999876544 468999999999976666654 355788899988888888889888432 2
Q ss_pred cccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcc
Q 002432 732 CFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLE 811 (922)
Q Consensus 732 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 811 (922)
+..+++|++|+++++. ++.++.... ....++..|++.+++++..++... .......++
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~--------------------f~~~~~~l~ 157 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS--------------------FVGLSFESV 157 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS--------------------STTSBSSCE
T ss_pred hhhccccccccccccc-cccCCchhh-cccchhhhhhhccccccccccccc--------------------hhhcchhhh
Confidence 3347899999999864 455543322 256678899999988998887642 112235789
Q ss_pred eEeechhhhhhhcCCCCCCCCCCCCccEEEeec-CCCcccchhHHhhcCCCCeEEEecccceEEecCCccccccceEecc
Q 002432 812 ELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRD-DDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQVHLIKKLELI 890 (922)
Q Consensus 812 ~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~-~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~~~sL~~L~i~ 890 (922)
.|++++|++..+.+..|. .++|++|.+.+ |.++.+|.+.++++++|++|++++|.++.+++.. +.+|+.|.+.
T Consensus 158 ~L~L~~N~i~~i~~~~f~----~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l 231 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFN----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRAR 231 (350)
T ss_dssp EEECCSSCCCEECTTSST----TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECT
T ss_pred hhccccccccCCChhhcc----ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhc
Confidence 999999999887766543 46899999987 9999999999999999999999999999987654 7899999999
Q ss_pred ccccccccccCCCCCCCcccccccEEEeeec
Q 002432 891 CLNDLEYLWIPNSKMGDSILQNLEILKTVAR 921 (922)
Q Consensus 891 ~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~ 921 (922)
+|++++.+| .+..|++|+.++++++
T Consensus 232 ~~~~l~~lP------~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 232 STYNLKKLP------TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCTTCCCCC------CTTTCCSCCEEECSCH
T ss_pred cCCCcCcCC------CchhCcChhhCcCCCC
Confidence 999999998 3567888999988764
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=5.7e-16 Score=175.52 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=114.1
Q ss_pred CcceEEEeecCCCCCCCC-CC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 207 KKCYAISWIDSSGGELPE-GL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
++++.|++++|.+..+++ .+ .+++|++|++++|... .+++ |..+++|++|++++|.+..+|.. ++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---EEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---CCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 467788888887766653 22 7778888888877654 2333 57777888888888877766532 677888
Q ss_pred EccCCCCCC-ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhC-CCCCCCEEEccCCcc
Q 002432 285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIA-SFTRLEELYMSNCFV 361 (922)
Q Consensus 285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~-~L~~L~~L~L~~~~~ 361 (922)
++++|.+.. +.. .+++|++|++++|.++.+ |..++++++|++|++++|. +..+++..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc
Confidence 888887777 332 457778888888877765 4457777788888887775 5554333354 677888888887776
Q ss_pred cccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCC
Q 002432 362 EWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALP 402 (922)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (922)
.. +.....+++|+.|++++|....+|
T Consensus 182 ~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 182 YD---------------VKGQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CE---------------EECCCCCTTCCEEECCSSCCCEEC
T ss_pred cc---------------ccccccCCCCCEEECCCCCCCCCC
Confidence 63 133445777777777777655443
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=3e-15 Score=156.19 Aligned_cols=182 Identities=25% Similarity=0.307 Sum_probs=154.2
Q ss_pred ecCCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432 192 VRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271 (922)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (922)
..+.....++.....+++++|++.+|.+..++....+++|++|++++|... .++...|.++++|++|++++|.+..+
T Consensus 48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ---SLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred eCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC---ccChhHhcCCcCCCEEECCCCcCCcc
Confidence 333444555555668899999999999988876669999999999999876 67777789999999999999999988
Q ss_pred ch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432 272 PS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS 347 (922)
Q Consensus 272 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (922)
|. .++.+++|++|++++|.+.. + ..++++++|++|++++|+++.+|.. ++++++|++|++++|. +..+++..+++
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 203 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDR 203 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhC
Confidence 65 47999999999999999988 4 5679999999999999999988765 6899999999999986 88888777899
Q ss_pred CCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432 348 FTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397 (922)
Q Consensus 348 L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (922)
+++|++|++++|.+.. .+++|+.|+++.+.
T Consensus 204 l~~L~~L~l~~N~~~~--------------------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDC--------------------TCPGIRYLSEWINK 233 (272)
T ss_dssp CTTCCEEECCSSCBCC--------------------CTTTTHHHHHHHHH
T ss_pred CcCCCEEEccCCCccc--------------------cCcHHHHHHHHHHh
Confidence 9999999999997652 35567777777654
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=4.8e-15 Score=149.96 Aligned_cols=149 Identities=22% Similarity=0.313 Sum_probs=117.4
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD 287 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 287 (922)
.+.++.+++.+..+|.... ++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .+..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC---ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3457777777777776543 78888888888766 5555556888888888888888888764 46788888888888
Q ss_pred CCCCCC-c-cccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+|.++. + ..|..+++|++|++++|+++.+|..+.++++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888877 4 55788888888888888888888888888888888888875 77777666788888888888887665
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.9e-15 Score=174.39 Aligned_cols=175 Identities=26% Similarity=0.323 Sum_probs=153.8
Q ss_pred cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432 204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT 283 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 283 (922)
..+..++.|++.+|.+..++....+++|+.|++++|.+. .++. |..+++|++|+|++|.+..+| .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 456788999999999988887669999999999999876 5655 689999999999999999887 6999999999
Q ss_pred EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|+|++|.+..++.+..+++|+.|+|++|.++.+ ..+..+++|++|++++|. +..+++ +..+++|++|+|++|.+..
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999999977899999999999999999988 579999999999999986 777776 8999999999999998863
Q ss_pred cccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 364 KVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
+..+..+++|+.|++++|.....|.
T Consensus 190 ---------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 ---------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ---------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ---------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 3568899999999999987655443
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.3e-15 Score=156.31 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=143.6
Q ss_pred CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCCccccCCCCcCCE
Q 002432 226 LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEI 305 (922)
Q Consensus 226 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~ 305 (922)
.++++|+.|++++|... .++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++.+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc---cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCE
Confidence 36789999999999876 5654 5889999999999999999887 9999999999999999999777999999999
Q ss_pred EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCC
Q 002432 306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPL 385 (922)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (922)
|++++|+++.++ .+.++++|++|++++|. +..++ . ++++++|++|++++|.+.. . ..+..+
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~--------------~-~~l~~l 177 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD--------------I-VPLAGL 177 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC--------------C-GGGTTC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc--------------c-hhhcCC
Confidence 999999999884 69999999999999986 88874 3 8999999999999998873 2 238899
Q ss_pred CCCCEEEeeecCCCCCCccccccccceeEEE
Q 002432 386 PRLTTLEIAVENDNALPEGFFVRELERFKIL 416 (922)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 416 (922)
++|+.|++++|....++....+++|+.+.+.
T Consensus 178 ~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp TTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred CccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence 9999999999998877654466677776654
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=3.2e-15 Score=159.40 Aligned_cols=177 Identities=17% Similarity=0.182 Sum_probs=144.6
Q ss_pred cCcceEEEeecCCCC-CCCCC---CCCCCccEEEccCCCCcCCCCCChHHhhCC-----CCCcEEEeeCCcCccCc-hhh
Q 002432 206 LKKCYAISWIDSSGG-ELPEG---LECPQLELLLLSSEHSSVDVNIPQRFFTGM-----RELKVVDLTNMQLFSLP-SSI 275 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l-----~~Lr~L~L~~~~i~~lp-~~i 275 (922)
.+++++|++++|.+. .+|.. ..+++|++|++++|... .+|.. |..+ ++|++|++++|.+..+| ..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---TRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---SSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---chhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 568999999999985 56654 37899999999999876 45544 4665 99999999999999876 789
Q ss_pred hccCCCCEEEccCCCCCC----cccc--CCCCcCCEEEeecCCCccc---chh-hcCCCCCCEEeccCCCCCCccC-cch
Q 002432 276 DLLVNLQTLCLDYSTLGD----ITII--GKLKNLEILSLIESDIVEF---PEE-LGKLTKLRLLDLTNCFHLKVIA-PNV 344 (922)
Q Consensus 276 ~~L~~L~~L~L~~~~l~~----p~~i--~~L~~L~~L~L~~~~l~~l---p~~-i~~L~~L~~L~l~~~~~l~~~p-~~~ 344 (922)
+++++|++|++++|.+.. |..+ +++++|++|++++|+++.+ +.. +.++++|++|++++|. +...+ ...
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 999999999999999754 3444 8999999999999999854 333 4688999999999986 66544 344
Q ss_pred hCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 345 IASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 345 l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
+..+++|++|++++|.+. ..+..+. ++|++|++++|....+|.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~--------------~ip~~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK--------------QVPKGLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCCCTTCCEEECTTSCCS--------------SCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred hhhcCCCCEEECCCCccC--------------hhhhhcc--CCceEEECCCCCCCCChh
Confidence 677999999999999887 3344554 799999999999887765
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.5e-15 Score=148.80 Aligned_cols=170 Identities=22% Similarity=0.326 Sum_probs=131.1
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccC
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDY 288 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 288 (922)
+.++..++.+..+|... .++|+.|++++|... .++...|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35666666666666543 458888999888766 6777777888999999999998888765 468889999999999
Q ss_pred CCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432 289 STLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 289 ~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
|.+.. + ..+.++++|++|++++|+++.+|.. +.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee---
Confidence 98887 4 4578899999999999988887765 6888999999999875 77887776788999999999888654
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeeecCC-CCCCcc
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVEND-NALPEG 404 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~ 404 (922)
+.+++|+.|+++.+.. +.+|.+
T Consensus 162 -----------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -----------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----------------cCCCCHHHHHHHHHhCCceeecc
Confidence 2345777777776653 345544
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=3.7e-15 Score=147.02 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCCEE
Q 002432 206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQTL 284 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L 284 (922)
.+++++|++.+|.+..++....+++|++|++++|... .++ .+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~---~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT---NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS---CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC---cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554443224444444444444221 111 12444444444444444442 33444444444444
Q ss_pred EccCCCCCC--ccccCCCCcCCEEEeecCC-CcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCc
Q 002432 285 CLDYSTLGD--ITIIGKLKNLEILSLIESD-IVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCF 360 (922)
Q Consensus 285 ~L~~~~l~~--p~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~ 360 (922)
++++|.+.. |..++.+++|++|++++|. ++.+| .+.++++|++|++++|. +..++ . +..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCcc
Confidence 444444443 3444444444444444443 44443 34444444444444443 33333 1 4444444444444443
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=5e-15 Score=148.65 Aligned_cols=148 Identities=21% Similarity=0.298 Sum_probs=92.3
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccC
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDY 288 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 288 (922)
+.+++.++.+..+|.... ++++.|++++|.+. .++...|..+++|++|+|++|.+..+ |..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 345666666666665432 46666666666554 45555556666677777776666654 55666666666666666
Q ss_pred CCCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 289 STLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 289 ~~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
|.+.. | ..|.++++|++|++++|+++.+ |..+.++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666 3 3456666666666666666655 3446666666666666664 66665555666666666666666543
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.4e-15 Score=157.33 Aligned_cols=172 Identities=18% Similarity=0.183 Sum_probs=140.0
Q ss_pred cCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEE
Q 002432 206 LKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLC 285 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 285 (922)
..++..+.+.++.+..++...++++|++|++++|... .++ . +..+++|++|++++|.+..+|. +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 3445556666777766664447889999999998765 566 3 5889999999999999999887 99999999999
Q ss_pred ccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccc
Q 002432 286 LDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKV 365 (922)
Q Consensus 286 L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~ 365 (922)
+++|.+...+.+.. .+|++|++++|+++.++ .+.++++|++|++++|. ++.++. ++.+++|++|++++|.+..
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~-- 164 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN-- 164 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB--
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc--
Confidence 99999988433444 99999999999999886 58999999999999986 888863 8899999999999998873
Q ss_pred cccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCc
Q 002432 366 EDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPE 403 (922)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (922)
...+..+++|+.|++++|.....|.
T Consensus 165 -------------~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 -------------TGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -------------CTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -------------hHHhccCCCCCEEeCCCCcccCCcc
Confidence 2678889999999999988655543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=147.77 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=90.8
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCC-ChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNI-PQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD 287 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 287 (922)
+.++++++.+..+|..+ ...++.|++++|.+. .+ +..+|.++++|++|++++|.++.++. .|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35677777766666543 234566666666554 33 33445666666666666666666543 56666666666666
Q ss_pred CCCCCC--ccccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 288 YSTLGD--ITIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 288 ~~~l~~--p~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+|.+.. +..|..+++|++|++++|+++.+ |..+.++++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666665 24466666666666666666655 4456666666666666654 55554444666666666666666554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=8.5e-15 Score=158.84 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=57.5
Q ss_pred EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-Cch-hhhccCCCCE-EEccCC
Q 002432 213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPS-SIDLLVNLQT-LCLDYS 289 (922)
Q Consensus 213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~-~i~~L~~L~~-L~L~~~ 289 (922)
+.+++.+..+|..+ .++++.|++++|.+. .+|.+.|.++++|++|+|++|.+.+ +|. .|.++++|+. +.+.+|
T Consensus 15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 15 LCQESKVTEIPSDL-PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEESTTCCSCCTTC-CTTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EecCCCCCccCcCc-CCCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 33334444444322 133444444444433 3444444444444444444444322 222 2344444332 233333
Q ss_pred CCCC--ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCC-CCCEEEccCCcc
Q 002432 290 TLGD--ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFT-RLEELYMSNCFV 361 (922)
Q Consensus 290 ~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~-~L~~L~L~~~~~ 361 (922)
++.. |..|..+++|++|++++|+++.+|. .+....++..|++.++..+..++...+..+. .++.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 4443 2334444444444444444443332 1233333444444433334444433333332 244444444443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=7.7e-15 Score=144.75 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=131.2
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLE 304 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~ 304 (922)
++++|+.|++++|.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~---~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT---DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS---CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc---ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 6789999999999876 677 3 589999999999999887765 68999999999999999986 89999999999
Q ss_pred EEEeecCCCcc-cchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCC
Q 002432 305 ILSLIESDIVE-FPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELM 383 (922)
Q Consensus 305 ~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (922)
+|++++|+++. .|..++++++|++|++++|..++.+|. ++++++|++|++++|.+.. +..+.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~ 178 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIE 178 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGG
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhc
Confidence 99999999984 678899999999999999866888873 8999999999999998863 33788
Q ss_pred CCCCCCEEEeeecCCC
Q 002432 384 PLPRLTTLEIAVENDN 399 (922)
Q Consensus 384 ~l~~L~~L~l~~~~~~ 399 (922)
.+++|+.|++++|.+.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 8999999999999865
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=5.1e-16 Score=168.01 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=70.9
Q ss_pred ceEEEeecCCCCCCCCCC-CC--CCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc--CchhhhccCCCCE
Q 002432 209 CYAISWIDSSGGELPEGL-EC--PQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS--LPSSIDLLVNLQT 283 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~ 283 (922)
.++++++++.+. +... .+ ++++.|++.+|... ..+..+ ..+++|++|++++|.+.. +|..+..+++|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~---~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMD---QPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEEC---SCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCcccc---ccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 455666555432 1111 22 45555555555433 222222 345555555555555542 4555555555555
Q ss_pred EEccCCCCCC--ccccCCCCcCCEEEeecC-CCc--ccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCC-CCCEEE
Q 002432 284 LCLDYSTLGD--ITIIGKLKNLEILSLIES-DIV--EFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFT-RLEELY 355 (922)
Q Consensus 284 L~L~~~~l~~--p~~i~~L~~L~~L~L~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~-~L~~L~ 355 (922)
|++++|.+.. +..++.+++|++|++++| .++ .+|..+.++++|++|++++|..++. ++.. +.+++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEE
Confidence 5555555543 455555555555555555 444 2444455555555555555522432 2222 44555 555555
Q ss_pred ccCC
Q 002432 356 MSNC 359 (922)
Q Consensus 356 L~~~ 359 (922)
+++|
T Consensus 202 l~~~ 205 (336)
T 2ast_B 202 LSGY 205 (336)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 5555
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.6e-14 Score=144.98 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=128.6
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEe
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSL 308 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L 308 (922)
+.++++++... .+|..+ .+.|+.|++++|.++.+|. .+..+++|++|+|++|.+.. |..|.++++|++|++
T Consensus 14 ~~v~c~~~~l~---~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLT---EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCS---SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcC---cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 67888888766 788755 3789999999999998865 79999999999999999987 689999999999999
Q ss_pred ecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCC
Q 002432 309 IESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPR 387 (922)
Q Consensus 309 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 387 (922)
++|+++.+|.. +.++++|++|++++|. +..+++..+..+++|++|++++|.+.. .....+..+++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~ 153 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT-------------IAKGTFSPLRA 153 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTT
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE-------------ECHHHHhCCCC
Confidence 99999999876 6899999999999986 888877779999999999999999874 33456888999
Q ss_pred CCEEEeeecCC
Q 002432 388 LTTLEIAVEND 398 (922)
Q Consensus 388 L~~L~l~~~~~ 398 (922)
|+.|++++|..
T Consensus 154 L~~L~L~~N~~ 164 (220)
T 2v9t_B 154 IQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEeCCCCc
Confidence 99999998874
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=143.52 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=128.2
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc--hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEE
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP--SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILS 307 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~ 307 (922)
++++++++... .+|..+ ...+++|++++|.++.++ ..++.+++|++|++++|.++. +..|.++++|++|+
T Consensus 14 ~~l~~s~n~l~---~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLN---KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcc---cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 58999998776 788755 456799999999999874 358999999999999999998 46899999999999
Q ss_pred eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432 308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386 (922)
Q Consensus 308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (922)
+++|+++.+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.+.. ..+..+..++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~ 153 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT-------------VAPGAFDTLH 153 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC-------------BCTTTTTTCT
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE-------------ECHHHhcCCC
Confidence 999999988665 8999999999999986 888866669999999999999998874 3457888999
Q ss_pred CCCEEEeeecCCC
Q 002432 387 RLTTLEIAVENDN 399 (922)
Q Consensus 387 ~L~~L~l~~~~~~ 399 (922)
+|+.|++++|...
T Consensus 154 ~L~~L~L~~N~l~ 166 (220)
T 2v70_A 154 SLSTLNLLANPFN 166 (220)
T ss_dssp TCCEEECCSCCEE
T ss_pred CCCEEEecCcCCc
Confidence 9999999988743
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.4e-14 Score=142.71 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=134.7
Q ss_pred CCCCCCCCCccccCcceEEEeecCCCCCCCCCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC
Q 002432 194 NGDVWEWPDEDALKKCYAISWIDSSGGELPEGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL 271 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (922)
+.+...++. ...+++++|++.+|.+..++... .+++|++|++++|... .++...|..+++|++|++++|.++.+
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 16 SQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCCCcCCcc
Confidence 334444443 45678999999999998887743 8999999999999876 78888889999999999999999988
Q ss_pred ch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCC
Q 002432 272 PS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIAS 347 (922)
Q Consensus 272 p~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (922)
|. .++++++|++|++++|.+.. + ..+.++++|++|++++|+++.+|.. +.++++|++|++++|.. .+.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~ 163 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCT 163 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecC
Confidence 76 47899999999999999988 4 5589999999999999999988776 79999999999999852 345
Q ss_pred CCCCCEEEccCCcccc
Q 002432 348 FTRLEELYMSNCFVEW 363 (922)
Q Consensus 348 L~~L~~L~L~~~~~~~ 363 (922)
+++|+.|+++.|.+.+
T Consensus 164 ~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 164 CPGIRYLSEWINKHSG 179 (208)
T ss_dssp TTTTHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHhCCc
Confidence 7789999999888776
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=152.32 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=129.7
Q ss_pred CcceEEEeecCCCCC-CCCC---CCCCCccEEEccCCCCcCCCCCC---hHHhhCCCCCcEEEeeCCcCccCc-hhhhcc
Q 002432 207 KKCYAISWIDSSGGE-LPEG---LECPQLELLLLSSEHSSVDVNIP---QRFFTGMRELKVVDLTNMQLFSLP-SSIDLL 278 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L 278 (922)
.++++|++.+|.+.. .|.. ..+++|++|++++|.... ..+ ...+..+++|++|++++|.+..+| ..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc--hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 357888888888743 3333 467888888888887652 222 233356888888888888888664 578888
Q ss_pred CCCCEEEccCCCCCC------ccccCCCCcCCEEEeecCCCcccchh----hcCCCCCCEEeccCCCCCCcc-CcchhCC
Q 002432 279 VNLQTLCLDYSTLGD------ITIIGKLKNLEILSLIESDIVEFPEE----LGKLTKLRLLDLTNCFHLKVI-APNVIAS 347 (922)
Q Consensus 279 ~~L~~L~L~~~~l~~------p~~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~-p~~~l~~ 347 (922)
++|++|++++|++.. +..++.+++|++|++++|+++.+|.. ++++++|++|++++|. +... |.. ++.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHh
Confidence 888888888888643 13346788888888888888766553 4778888888888876 5555 554 666
Q ss_pred C---CCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcccccccccee
Q 002432 348 F---TRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERF 413 (922)
Q Consensus 348 L---~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l 413 (922)
+ ++|++|++++|.+. ..+..+. ++|+.|++++|....+|....+++|+.+
T Consensus 247 ~~~~~~L~~L~Ls~N~l~--------------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE--------------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNL 299 (310)
T ss_dssp CCCCTTCCCEECCSSCCC--------------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCE
T ss_pred ccCcCcCCEEECCCCCCC--------------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEE
Confidence 5 58888888888776 2333443 6888888888887766543234444444
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=157.79 Aligned_cols=171 Identities=20% Similarity=0.217 Sum_probs=126.9
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhh-CCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEcc
Q 002432 210 YAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFT-GMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLD 287 (922)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~ 287 (922)
+.+++.++.+..+|..+ ...++.|++++|.+. .++...|. ++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888887777654 245788888888766 56666666 8888888888888888775 468888888888888
Q ss_pred CCCCCC-c-cccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCCCCCCccCcchh---CCCCCCCEEEccCCcc
Q 002432 288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNCFHLKVIAPNVI---ASFTRLEELYMSNCFV 361 (922)
Q Consensus 288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l---~~L~~L~~L~L~~~~~ 361 (922)
+|.+.. + ..|..+.+|++|++++|+++.+ |..|.++++|++|++++|. +..+|...+ .++++|++|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 888877 3 5688888888888888888866 5568888888888888875 788887645 5688888888888877
Q ss_pred cccccccCCcccccccCcccCCCCCC--CCEEEeeecCC
Q 002432 362 EWKVEDEGSSSKKSKASLDELMPLPR--LTTLEIAVEND 398 (922)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 398 (922)
.. .....+..++. ++.|++.+|..
T Consensus 176 ~~-------------l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KK-------------LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CC-------------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred Cc-------------cCHHHhhhccHhhcceEEecCCCc
Confidence 63 12234444554 36777777764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=5.6e-14 Score=142.03 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=129.1
Q ss_pred ccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEE
Q 002432 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILS 307 (922)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~ 307 (922)
.+.++++++... .+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.+.. + ..|..+++|++|+
T Consensus 21 ~~~v~c~~~~l~---~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHA---SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcC---ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 467888887765 788755 48999999999999987 6789999999999999999988 4 6689999999999
Q ss_pred eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCC
Q 002432 308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLP 386 (922)
Q Consensus 308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (922)
+++|+++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+.. .....+..++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~ 159 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS-------------IPHGAFDRLS 159 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC-------------CCTTTTTTCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc-------------cCHHHHhCCC
Confidence 999999988765 6899999999999986 8899987 8999999999999998873 2235688899
Q ss_pred CCCEEEeeecCCCC
Q 002432 387 RLTTLEIAVENDNA 400 (922)
Q Consensus 387 ~L~~L~l~~~~~~~ 400 (922)
+|+.|++++|....
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 99999999987543
No 109
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=165.99 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=126.5
Q ss_pred ceEeC---CCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 002432 5 ANFSI---EILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWKNALHELRMPTEN 81 (922)
Q Consensus 5 ~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~~~l~~~~~~~~~ 81 (922)
.+|++ ++|+.+||++||.++++. +.....+.+.+|+++|+|+||||+.+|+.|+.+. ..|+.+++.+......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFK 351 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHH
Confidence 34555 589999999999999954 2334467899999999999999999999999873 3699888887622110
Q ss_pred ----CCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-CCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Q 002432 82 ----NFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-PKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELK 155 (922)
Q Consensus 82 ----~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~ 155 (922)
........+..++..||+.||++ .|.||+|+|+| +|+.|+. .++..|.++ .+++ .+++++|+
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~----~~~l~~L~ 419 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEV----EDILQEFV 419 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHH----HHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC-------HHHH----HHHHHHHH
Confidence 00112245899999999999999 79999999999 6899988 888899764 2333 45699999
Q ss_pred hhcceeccc--ccceEEecHHHHHHHHHHH
Q 002432 156 DSCLLLEGY--SCREFSMHDVVHDVAILIA 183 (922)
Q Consensus 156 ~~~l~~~~~--~~~~~~mhdli~dl~~~~~ 183 (922)
++++++... ....|.||+++|+++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999997542 2347999999999998773
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=3.5e-14 Score=146.77 Aligned_cols=149 Identities=22% Similarity=0.219 Sum_probs=132.8
Q ss_pred cccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCE
Q 002432 204 DALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQT 283 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~ 283 (922)
....++++|++.+|.+..++....+++|+.|++++|... .++. |.++++|++|++++|.++.+|.... .+|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~---~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC---CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 456789999999999999986558999999999999876 5666 6999999999999999999876443 99999
Q ss_pred EEccCCCCCCccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 284 LCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 284 L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
|++++|.+..++.+..+++|++|++++|+++.+| .++.+++|++|++++|. +..++ .++.+++|+.|++++|.+..
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~--~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG--GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT--TSTTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH--HhccCCCCCEEeCCCCcccC
Confidence 9999999999777999999999999999999987 79999999999999986 77773 38999999999999998763
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=152.49 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=143.2
Q ss_pred cccCcceEEEeecCCCCCCCCC------CCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc---Cch-
Q 002432 204 DALKKCYAISWIDSSGGELPEG------LECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS---LPS- 273 (922)
Q Consensus 204 ~~~~~l~~L~l~~~~~~~l~~~------~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~---lp~- 273 (922)
....+++.|++++|.+...... ..+++|++|++++|... .++...|+.+++|++|++++|.+.. ++.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP---AFSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC---CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc---hhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 3467899999999998653221 25889999999999876 6776667999999999999999763 433
Q ss_pred -hhhccCCCCEEEccCCCCCC-cc----ccCCCCcCCEEEeecCCCccc-chhhcCC---CCCCEEeccCCCCCCccCcc
Q 002432 274 -SIDLLVNLQTLCLDYSTLGD-IT----IIGKLKNLEILSLIESDIVEF-PEELGKL---TKLRLLDLTNCFHLKVIAPN 343 (922)
Q Consensus 274 -~i~~L~~L~~L~L~~~~l~~-p~----~i~~L~~L~~L~L~~~~l~~l-p~~i~~L---~~L~~L~l~~~~~l~~~p~~ 343 (922)
.++.+++|++|++++|.++. +. .++.+++|++|++++|+++.+ |..+..+ ++|++|++++|. ++.+|..
T Consensus 191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~ 269 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG 269 (310)
T ss_dssp SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC
T ss_pred HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh
Confidence 34789999999999999987 43 357899999999999999976 8778777 699999999986 8899886
Q ss_pred hhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 344 VIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 344 ~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+. ++|++|++++|.+.. +..+..+++|+.|++++|...
T Consensus 270 -~~--~~L~~L~Ls~N~l~~---------------~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 270 -LP--AKLRVLDLSSNRLNR---------------APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -CC--SCCSCEECCSCCCCS---------------CCCTTSCCCCSCEECSSTTTS
T ss_pred -hc--CCCCEEECCCCcCCC---------------CchhhhCCCccEEECcCCCCC
Confidence 54 899999999998873 133678899999999999754
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2.8e-14 Score=155.41 Aligned_cols=168 Identities=24% Similarity=0.282 Sum_probs=143.6
Q ss_pred EEecCCCCCCCCCccccCcceEEEeecCCCCCCCCCC---CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCC
Q 002432 190 FLVRNGDVWEWPDEDALKKCYAISWIDSSGGELPEGL---ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNM 266 (922)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~ 266 (922)
+...+.++..+|. .....++.|++++|.+..++... .+++|+.|++++|.+. .++...|.++++|++|+|++|
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC---ccChhhccCCCCCCEEECCCC
Confidence 3344455666665 45678999999999998887643 7899999999999876 677777899999999999999
Q ss_pred cCccCch-hhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchhh----cCCCCCCEEeccCCCCCCc
Q 002432 267 QLFSLPS-SIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEEL----GKLTKLRLLDLTNCFHLKV 339 (922)
Q Consensus 267 ~i~~lp~-~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~ 339 (922)
.++.+|. .|..+.+|++|+|++|.+.. +..|.++++|++|++++|+++.+|..+ .++++|++|++++|. +..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence 9998865 68999999999999999987 688999999999999999999998875 679999999999986 899
Q ss_pred cCcchhCCCCC--CCEEEccCCccc
Q 002432 340 IAPNVIASFTR--LEELYMSNCFVE 362 (922)
Q Consensus 340 ~p~~~l~~L~~--L~~L~L~~~~~~ 362 (922)
+|...+..++. |+.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 99877888887 489999998775
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.6e-14 Score=164.96 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=148.0
Q ss_pred EeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCC
Q 002432 213 SWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLG 292 (922)
Q Consensus 213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~ 292 (922)
.+..+.+..+.....+.+|+.|++++|.+. .++. |..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+.
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~---~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCC---CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCC---CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 333344444444447889999999999875 5653 5899999999999999999887 999999999999999999
Q ss_pred CccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcc
Q 002432 293 DITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSS 372 (922)
Q Consensus 293 ~p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~ 372 (922)
.++.+..+++|++|+|++|.+..+| .+..+++|+.|++++|. +..++ . ++.+++|+.|+|++|.+..
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~--------- 167 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD--------- 167 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCC---------
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCC---------
Confidence 9778999999999999999999875 59999999999999986 88874 3 9999999999999998873
Q ss_pred cccccCcccCCCCCCCCEEEeeecCCCCCCccccccccceeEE
Q 002432 373 KKSKASLDELMPLPRLTTLEIAVENDNALPEGFFVRELERFKI 415 (922)
Q Consensus 373 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 415 (922)
. ..+..+++|+.|++++|.+..++....+++|+.|.+
T Consensus 168 -----~-~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 168 -----I-VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp -----C-GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred -----c-hhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 2 228899999999999999887765436666666654
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.8e-15 Score=163.75 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=108.0
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCC--CCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC---ccccCCCCcCC
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGM--RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD---ITIIGKLKNLE 304 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~---p~~i~~L~~L~ 304 (922)
.++.++++++. +.+..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +..+..+++|+
T Consensus 48 ~~~~l~l~~~~------~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKN------LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCB------CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeecccccc------CCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 47788888763 334555666 78888888888888766667788888888888888764 46778888888
Q ss_pred EEEeecCCCc-ccchhhcCCCCCCEEeccCCCCCCc--cCcchhCCCCCCCEEEccCC-cccccccccCCcccccccCcc
Q 002432 305 ILSLIESDIV-EFPEELGKLTKLRLLDLTNCFHLKV--IAPNVIASFTRLEELYMSNC-FVEWKVEDEGSSSKKSKASLD 380 (922)
Q Consensus 305 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~l~~L~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~ 380 (922)
+|++++|.++ ..|..++++++|++|++++|..++. ++.. ++++++|++|++++| .+.. .....
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------------~~~~~ 188 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------------KHVQV 188 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------------HHHHH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------------HHHHH
Confidence 8888888777 5677788888888888888854653 4443 677888888888888 6552 01234
Q ss_pred cCCCCC-CCCEEEeeec
Q 002432 381 ELMPLP-RLTTLEIAVE 396 (922)
Q Consensus 381 ~l~~l~-~L~~L~l~~~ 396 (922)
.+..++ +|++|+++++
T Consensus 189 ~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 189 AVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHSCTTCCEEECCSC
T ss_pred HHHhcccCCCEEEeCCC
Confidence 456667 7888887765
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=5.3e-14 Score=134.83 Aligned_cols=136 Identities=26% Similarity=0.250 Sum_probs=105.4
Q ss_pred CCCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcc-cchhhcCCCCCCEEe
Q 002432 254 GMRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVE-FPEELGKLTKLRLLD 330 (922)
Q Consensus 254 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~ 330 (922)
..++|++|++++|.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|+++. +|..+.++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3477888888888887 7887788888888888888887777778888888888888888886 677677788888888
Q ss_pred ccCCCCCCccCc-chhCCCCCCCEEEccCCcccccccccCCcccccccCc----ccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASL----DELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
+++|. ++.+|. ..++++++|++|++++|.+.. .+ ..+..+++|+.|+++++....+|..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~--------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN--------------LNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT--------------STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc--------------hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88875 777652 337888888888888887763 22 2577788888888888877666643
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.4e-13 Score=156.82 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=101.6
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEcc
Q 002432 208 KCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLD 287 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 287 (922)
+++.|++.+|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +++ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5666777777776666544 366777777777655 555 235677777777777777766 554 77777777
Q ss_pred CCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccccccc
Q 002432 288 YSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVE 366 (922)
Q Consensus 288 ~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~ 366 (922)
+|.++. |. .+++|++|++++|+++.+|. .+++|++|++++|. ++.+|. ++ ++|+.|++++|.+..
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~--- 194 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES--- 194 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS---
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc---
Confidence 777766 44 56777777777777776665 46677777777764 666665 44 677777777776651
Q ss_pred ccCCcccccccCcccCCCCCCC-------CEEEeeecCCCCCCccc
Q 002432 367 DEGSSSKKSKASLDELMPLPRL-------TTLEIAVENDNALPEGF 405 (922)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~ 405 (922)
.+. +.. +| +.|++++|.+..+|..+
T Consensus 195 -----------lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 195 -----------LPA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp -----------CCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred -----------hhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 112 222 44 77777777766666643
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=5.1e-15 Score=163.30 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=97.2
Q ss_pred CcceEEEeecCCCCC-----CCCCC-CCCCccEEEccCCCCc-CCCCCChHH------hhCCCCCcEEEeeCCcCcc---
Q 002432 207 KKCYAISWIDSSGGE-----LPEGL-ECPQLELLLLSSEHSS-VDVNIPQRF------FTGMRELKVVDLTNMQLFS--- 270 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~-~~~~l~~~~------~~~l~~Lr~L~L~~~~i~~--- 270 (922)
+++++|++++|.+.. ++..+ .+++|++|++++|... +.+.+|..+ |..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666666665532 11112 4566666666665432 112233332 3566666666666666654
Q ss_pred --CchhhhccCCCCEEEccCCCCCC--ccc----cCCC---------CcCCEEEeecCCCc--ccc---hhhcCCCCCCE
Q 002432 271 --LPSSIDLLVNLQTLCLDYSTLGD--ITI----IGKL---------KNLEILSLIESDIV--EFP---EELGKLTKLRL 328 (922)
Q Consensus 271 --lp~~i~~L~~L~~L~L~~~~l~~--p~~----i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~~ 328 (922)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|+++ .+| ..+.++++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 55566666666666666666643 222 2223 66666666666664 333 34556666666
Q ss_pred EeccCCCCCCc-----cCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecC
Q 002432 329 LDLTNCFHLKV-----IAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEN 397 (922)
Q Consensus 329 L~l~~~~~l~~-----~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (922)
|++++|. ++. +.+..+.++++|++|++++|.+.. ......+..+..+++|+.|++++|.
T Consensus 192 L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---------~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 192 VKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------LGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp EECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------HHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred EECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---------HHHHHHHHHHccCCCcCEEECCCCC
Confidence 6666664 441 112125666666666666665531 0001233445556666666666554
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=3.9e-13 Score=153.20 Aligned_cols=168 Identities=21% Similarity=0.230 Sum_probs=140.1
Q ss_pred CCCCCCCCCccccCcceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch
Q 002432 194 NGDVWEWPDEDALKKCYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS 273 (922)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~ 273 (922)
+..+..+|. ...++++.|++++|.+..+| ..+++|++|++++|.+. .+|. + .+ +|++|++++|.++.+|.
T Consensus 68 ~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~---~ip~-l-~~--~L~~L~Ls~N~l~~lp~ 137 (571)
T 3cvr_A 68 RLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS---TLPE-L-PA--SLKHLDVDNNQLTMLPE 137 (571)
T ss_dssp SSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---CCCC-C-CT--TCCEEECCSSCCSCCCC
T ss_pred CCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC---Ccch-h-hc--CCCEEECCCCcCCCCCC
Confidence 334444443 23578999999999999998 45799999999999876 5777 3 44 99999999999999988
Q ss_pred hhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCC-
Q 002432 274 SIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRL- 351 (922)
Q Consensus 274 ~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L- 351 (922)
.+++|++|++++|.++. |. .+++|++|++++|+++.+|. +. ++|++|++++|. ++.+|. +.. +|
T Consensus 138 ---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~ 203 (571)
T 3cvr_A 138 ---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNH 203 (571)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC------
T ss_pred ---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhh
Confidence 68999999999999998 55 68999999999999999998 76 899999999985 888887 554 67
Q ss_pred ------CEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 352 ------EELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 352 ------~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
+.|++++|.+. ..+..+..+++|+.|++++|...
T Consensus 204 ~~~~~L~~L~Ls~N~l~--------------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 204 HSEETEIFFRCRENRIT--------------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ----CCEEEECCSSCCC--------------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred cccccceEEecCCCcce--------------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 99999999887 45667778999999999999864
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.4e-13 Score=130.30 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=65.2
Q ss_pred CcceEEEeecCCCC--CCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCC
Q 002432 207 KKCYAISWIDSSGG--ELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQ 282 (922)
Q Consensus 207 ~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~ 282 (922)
+++++|++.+|.+. .+|..+ .+++|++|++++|... .+ ..|..+++|++|++++|.+.. +|..+..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45566666666554 454443 4555555555555433 22 223455555555555555554 444444455555
Q ss_pred EEEccCCCCCC-c--cccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEeccCCCCCCccC
Q 002432 283 TLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDLTNCFHLKVIA 341 (922)
Q Consensus 283 ~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p 341 (922)
+|++++|.+.. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. ...+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 55555555544 2 445555555555555555554443 34555555555555543 44443
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=6.4e-13 Score=130.00 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=98.3
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEee
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLI 309 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~ 309 (922)
++++++++... .+|..+ .++|++|++++|.++.+|..+.++++|++|++++|.++. +..|.++++|++|+++
T Consensus 13 ~~l~~~~~~l~---~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK---VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS---SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC---cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 45666666554 566544 357888888888888888888888888888888888887 4678888888888888
Q ss_pred cCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 310 ESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 310 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+|+++.+|. .|..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 888887764 57888888888888875 78888776888888888888888765
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=3.7e-14 Score=154.62 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=57.4
Q ss_pred ccEEEccCCCCcCCCCCCh----HHhhCCC-CCcEEEeeCCcCccC-chhhhcc-----CCCCEEEccCCCCCC--ccc-
Q 002432 231 LELLLLSSEHSSVDVNIPQ----RFFTGMR-ELKVVDLTNMQLFSL-PSSIDLL-----VNLQTLCLDYSTLGD--ITI- 296 (922)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~--p~~- 296 (922)
|+.|++++|... ..+. ..|.+++ +|++|++++|.+... +..+..+ ++|++|++++|.+.. +..
T Consensus 24 L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 24 VTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 555555555433 3332 3344454 555555555555533 3334433 555555555555543 221
Q ss_pred ---cCCC-CcCCEEEeecCCCcccch-h----hcC-CCCCCEEeccCCCCCCc-----cCcchhCCCC-CCCEEEccCCc
Q 002432 297 ---IGKL-KNLEILSLIESDIVEFPE-E----LGK-LTKLRLLDLTNCFHLKV-----IAPNVIASFT-RLEELYMSNCF 360 (922)
Q Consensus 297 ---i~~L-~~L~~L~L~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~~-----~p~~~l~~L~-~L~~L~L~~~~ 360 (922)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++|. ++. ++.. +..++ +|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 2233 455555555555543322 1 222 2355555555543 332 1111 23333 55555555554
Q ss_pred cc
Q 002432 361 VE 362 (922)
Q Consensus 361 ~~ 362 (922)
+.
T Consensus 179 l~ 180 (362)
T 3goz_A 179 LA 180 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=6.6e-13 Score=130.03 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchh--hhccCCCCEEEccCCCCCC--ccccCCCCcCCEEE
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSS--IDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILS 307 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~ 307 (922)
++++++++... .+|..+ ..+|++|++++|.+..+|.. ++.+++|++|++++|.++. |..|.++++|++|+
T Consensus 11 ~~l~~s~~~l~---~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK---EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS---SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC---cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 34445444433 444433 12556666666666555432 5566666666666666555 35556666666666
Q ss_pred eecCCCcccchh-hcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 308 LIESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+++|+++.++.. +.++++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666666554432 5556666666666654 44443333555666666666655544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.9e-13 Score=128.01 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=66.7
Q ss_pred CCCCcEEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcc-cchhhcCCCCCCEEec
Q 002432 255 MRELKVVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVE-FPEELGKLTKLRLLDL 331 (922)
Q Consensus 255 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l 331 (922)
.++|+.|++++|.+. .+|..++.+++|++|++++|.+.....++.+++|++|++++|.++. +|..++++++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 355666666666666 5666666666666666666666555556666666666666666665 5555566666666666
Q ss_pred cCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432 332 TNCFHLKVIAP-NVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 332 ~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~ 362 (922)
++|. ++.++. ..++++++|++|++++|.+.
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 6664 555431 22666666666666666555
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=3e-13 Score=160.35 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=101.8
Q ss_pred CcceEEEeecCCCCCCCCCC-CCCCccEEEccCCCCcC-CCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 207 KKCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHSSV-DVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~-~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
.+++++.+.++.+...+... ....|+.+.+....... .-.++...|..++.|++|+|++|.+..+|..+.++++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 45788999888876665433 33344443333221100 00355666799999999999999999999999999999999
Q ss_pred EccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccc
Q 002432 285 CLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 285 ~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~ 363 (922)
+|++|.+.. |..|++|++|++|+|++|.++.+|..|++|++|++|++++|. ++.+|.. |+++++|++|+|++|.+.+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCC
Confidence 999999998 888999999999999999999999999999999999999985 8899987 9999999999999998874
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=8.4e-13 Score=129.25 Aligned_cols=125 Identities=23% Similarity=0.331 Sum_probs=111.9
Q ss_pred cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-cc--ccCCCCcCCEEEeecCCCccc-chhhcCCCCCCEEeccCC
Q 002432 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-IT--IIGKLKNLEILSLIESDIVEF-PEELGKLTKLRLLDLTNC 334 (922)
Q Consensus 259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~--~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~ 334 (922)
++++++++.++.+|..+.. +|++|++++|.+.. +. .|+.+++|++|++++|+++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987765 99999999999988 43 489999999999999999977 678999999999999998
Q ss_pred CCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCC
Q 002432 335 FHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDN 399 (922)
Q Consensus 335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (922)
. +..++...++++++|++|++++|.+.. ..+..+..+++|+.|++++|...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQISC-------------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCCE-------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCCe-------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 6 888887779999999999999999885 44677899999999999998754
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=5.3e-13 Score=128.79 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=55.9
Q ss_pred hCCCCCcEEEeeCCcCccCchhhhccC-CCCEEEccCCCCCCccccCCCCcCCEEEeecCCCcccchhh-cCCCCCCEEe
Q 002432 253 TGMRELKVVDLTNMQLFSLPSSIDLLV-NLQTLCLDYSTLGDITIIGKLKNLEILSLIESDIVEFPEEL-GKLTKLRLLD 330 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 330 (922)
..+.+|++|++++|.++.+|. +..+. +|++|++++|.+.....++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 344555555555555555533 33333 55555555555554445555555555555555555554333 5555555555
Q ss_pred ccCCCCCCccCc-chhCCCCCCCEEEccCCccc
Q 002432 331 LTNCFHLKVIAP-NVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 331 l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~ 362 (922)
+++|. ++.+|. ..++++++|++|++++|.+.
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 55553 455543 12555555555555555544
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=7.2e-14 Score=152.35 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=111.1
Q ss_pred EEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-----hhhhccC-CCCEEEccCCCCCC--ccccCCC-----
Q 002432 234 LLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-----SSIDLLV-NLQTLCLDYSTLGD--ITIIGKL----- 300 (922)
Q Consensus 234 L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~l~~--p~~i~~L----- 300 (922)
+.++.|... ...+.++...++|++|++++|.+...+ ..+..++ +|++|++++|.+.. +..+..+
T Consensus 3 ~~ls~n~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGS---NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTC---CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccch---HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 456666544 333445566777999999999998775 5778888 89999999999876 5666665
Q ss_pred CcCCEEEeecCCCcccchh-----hcCC-CCCCEEeccCCCCCCccCcchh----CC-CCCCCEEEccCCcccccccccC
Q 002432 301 KNLEILSLIESDIVEFPEE-----LGKL-TKLRLLDLTNCFHLKVIAPNVI----AS-FTRLEELYMSNCFVEWKVEDEG 369 (922)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~~-----i~~L-~~L~~L~l~~~~~l~~~p~~~l----~~-L~~L~~L~L~~~~~~~~~~~~~ 369 (922)
++|++|++++|.++..+.. +..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------ 152 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI------ 152 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG------
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH------
Confidence 9999999999998855432 5555 899999999986 777765433 34 3699999999998773
Q ss_pred CcccccccCcccCCCCC-CCCEEEeeecCCC
Q 002432 370 SSSKKSKASLDELMPLP-RLTTLEIAVENDN 399 (922)
Q Consensus 370 ~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 399 (922)
.........+..++ +|++|++++|...
T Consensus 153 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 153 ---KSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp ---SCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred ---HHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 00112223344454 8999999988754
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=8.6e-13 Score=123.48 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=65.9
Q ss_pred CcceEEEeecCCCC--CCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCcc-CchhhhccCCCC
Q 002432 207 KKCYAISWIDSSGG--ELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFS-LPSSIDLLVNLQ 282 (922)
Q Consensus 207 ~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~ 282 (922)
+++++|++.+|.+. .+|..+ .+++|+.|++++|... .+ ..|..+++|++|++++|.+.. +|..++.+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45666666666664 455443 5555666666555443 22 223555556666666665554 455555555555
Q ss_pred EEEccCCCCCC-c--cccCCCCcCCEEEeecCCCcccch----hhcCCCCCCEEecc
Q 002432 283 TLCLDYSTLGD-I--TIIGKLKNLEILSLIESDIVEFPE----ELGKLTKLRLLDLT 332 (922)
Q Consensus 283 ~L~L~~~~l~~-p--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~ 332 (922)
+|++++|.+.. + ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555554 2 455555555555555555554443 34555555555543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=125.75 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=111.1
Q ss_pred CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCCC
Q 002432 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 335 (922)
-++++++++.++.+|..+. .+|++|++++|.+.. |..|..+++|++|++++|.++.++. .|.++++|++|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999998765 689999999999998 8999999999999999999998865 58999999999999986
Q ss_pred CCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 336 HLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
+..+++..|+.+++|++|++++|.+.. .....+..+++|+.|++++|..
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDISV-------------VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTTTCTTCCEEECCSSCE
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCCe-------------eChhhhhcCccccEEEeCCCCe
Confidence 889988779999999999999998873 2234588899999999998874
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=3.1e-13 Score=149.02 Aligned_cols=183 Identities=20% Similarity=0.295 Sum_probs=137.3
Q ss_pred cCcceEEEeecCCCCCCC----CC--------CCCCCccEEEccCCCCcCCC--CCChHHhhCCCCCcEEEeeCCcCcc-
Q 002432 206 LKKCYAISWIDSSGGELP----EG--------LECPQLELLLLSSEHSSVDV--NIPQRFFTGMRELKVVDLTNMQLFS- 270 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~----~~--------~~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~i~~- 270 (922)
.+++++|++++|.+..+. .. ..+++|++|++++|.+...+ .++. .+..+++|++|+|++|.+..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHH
Confidence 467899999998765442 21 26799999999999765211 1343 34889999999999999863
Q ss_pred ----Cchhhhcc---------CCCCEEEccCCCCCC---c---cccCCCCcCCEEEeecCCCc------ccchhhcCCCC
Q 002432 271 ----LPSSIDLL---------VNLQTLCLDYSTLGD---I---TIIGKLKNLEILSLIESDIV------EFPEELGKLTK 325 (922)
Q Consensus 271 ----lp~~i~~L---------~~L~~L~L~~~~l~~---p---~~i~~L~~L~~L~L~~~~l~------~lp~~i~~L~~ 325 (922)
++..+..+ ++|++|++++|.+.. + ..+..+++|++|++++|+++ -.|..+.++++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 34445555 899999999999873 3 46778999999999999888 23447889999
Q ss_pred CCEEeccCCCCC-----CccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccC--CCCCCCCEEEeeecCC
Q 002432 326 LRLLDLTNCFHL-----KVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL--MPLPRLTTLEIAVEND 398 (922)
Q Consensus 326 L~~L~l~~~~~l-----~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~ 398 (922)
|++|++++|. + ..+|.. +.++++|++|++++|.+... .....+..+ +++++|+.|++++|..
T Consensus 218 L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~---------~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 218 LKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR---------GAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH---------HHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred ccEEECcCCC-CCcHHHHHHHHH-HccCCCcCEEECCCCCCchh---------hHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 9999999986 6 556665 88999999999999987630 000123445 4588999999999886
Q ss_pred CC
Q 002432 399 NA 400 (922)
Q Consensus 399 ~~ 400 (922)
..
T Consensus 287 ~~ 288 (386)
T 2ca6_A 287 EL 288 (386)
T ss_dssp BH
T ss_pred CH
Confidence 65
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.9e-12 Score=124.92 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccc-cCCCCcCC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITI-IGKLKNLE 304 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~-i~~L~~L~ 304 (922)
.+.+|+.|++++|... .++. +....++|++|++++|.++.+ ..++.+++|++|++++|.+.. |.. +..+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~---~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP---VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCC---SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCc---hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455666666666544 3432 222233667777777666665 456666677777777776666 433 36667777
Q ss_pred EEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCcc---hhCCCCCCCEEEccCCccc
Q 002432 305 ILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAPN---VIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 305 ~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~l~~L~~L~~L~L~~~~~~ 362 (922)
+|++++|.++.+|. .+.++++|++|++++|. +..+|.. .++.+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777776666665 56667777777777764 5555543 3566777777777666543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3e-13 Score=160.32 Aligned_cols=132 Identities=22% Similarity=0.231 Sum_probs=113.3
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCE
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEI 305 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~ 305 (922)
.+..|+.|++++|.+. .+|..+| ++++|++|+|++|.++.+|..|++|++|++|+|++|.|.. |..|++|++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~---~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF---NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS---CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC---CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 8899999999999876 7888885 8999999999999999999999999999999999999998 899999999999
Q ss_pred EEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchhCCCCC-CCEEEccCCcccc
Q 002432 306 LSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVIASFTR-LEELYMSNCFVEW 363 (922)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~-L~~L~L~~~~~~~ 363 (922)
|+|++|.++.+|..|++|++|++|++++|. +...++..+..+.. +..|++++|.+..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999999999999999999999999999997 66554443544321 2236677776653
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.5e-11 Score=118.83 Aligned_cols=106 Identities=26% Similarity=0.404 Sum_probs=60.4
Q ss_pred CCCcEEEeeCCcCccCch-hhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEec
Q 002432 256 RELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDL 331 (922)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 331 (922)
++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..+..+++|++|++++|+++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 455666666666555543 34555666666666666555 2 3355666666666666666655443 455666666666
Q ss_pred cCCCCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 332 TNCFHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 332 ~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
++|. ++.+|...+.++++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6653 55555554455666666666665544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2e-11 Score=117.83 Aligned_cols=124 Identities=24% Similarity=0.321 Sum_probs=107.8
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCch-hhhccCCCCEEEcc
Q 002432 209 CYAISWIDSSGGELPEGLECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPS-SIDLLVNLQTLCLD 287 (922)
Q Consensus 209 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 287 (922)
.+.+++.++.+..+|... .++|+.|++++|... .++...|..+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356888888888887544 479999999999876 6787778999999999999999998875 47899999999999
Q ss_pred CCCCCC-c-cccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCCC
Q 002432 288 YSTLGD-I-TIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCFH 336 (922)
Q Consensus 288 ~~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 336 (922)
+|.++. | ..+..+++|++|++++|+++.+|.. +.++++|++|++++|..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999988 4 5589999999999999999999876 58899999999999863
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.3e-11 Score=141.49 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=105.9
Q ss_pred CCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCC
Q 002432 256 RELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNC 334 (922)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 334 (922)
..|++|++++|.++.+|. ++.+++|++|+|++|.+.. |..|+.+++|++|++++|.++.+| .++++++|++|++++|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 369999999999999997 9999999999999999999 899999999999999999999998 8999999999999998
Q ss_pred CCCCcc--CcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEe
Q 002432 335 FHLKVI--APNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEI 393 (922)
Q Consensus 335 ~~l~~~--p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 393 (922)
. +..+ |.. ++++++|++|++++|.+.. .+. ....-+..+++|+.|++
T Consensus 519 ~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~---~~~-------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 R-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ---EEG-------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CCSSSTTGG-GGGCTTCCEEECTTSGGGG---SSS-------CTTHHHHHCTTCSEEEC
T ss_pred C-CCCCCCcHH-HhcCCCCCEEEecCCcCCC---Ccc-------HHHHHHHHCcccCccCC
Confidence 6 8887 555 9999999999999999874 110 11112334788888864
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.4e-11 Score=141.28 Aligned_cols=188 Identities=19% Similarity=0.224 Sum_probs=143.1
Q ss_pred cceEEEeecCCCCCCCCCC-CCCCccEEEccCCCC-----------cCCCCCChHHhhCCCCCcEEE-eeCCcCccCch-
Q 002432 208 KCYAISWIDSSGGELPEGL-ECPQLELLLLSSEHS-----------SVDVNIPQRFFTGMRELKVVD-LTNMQLFSLPS- 273 (922)
Q Consensus 208 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~-----------~~~~~l~~~~~~~l~~Lr~L~-L~~~~i~~lp~- 273 (922)
.+++|++++|.+..+|..+ .+++|+.|++++|.. ... ..++..++.+++|+.|+ ++.+.+..++.
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 4445666666666666555 666777777755430 011 23344558889999998 66665544432
Q ss_pred -----hhhc--cCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCCCCCEEeccCCCCCCccCcchh
Q 002432 274 -----SIDL--LVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLTKLRLLDLTNCFHLKVIAPNVI 345 (922)
Q Consensus 274 -----~i~~--L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l 345 (922)
.+.. ...|++|++++|.++. |. |+.+++|++|++++|+++.+|..++++++|++|++++|. ++.+| . +
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1222 1369999999999999 55 999999999999999999999999999999999999986 88888 4 9
Q ss_pred CCCCCCCEEEccCCcccccccccCCcccccccC-cccCCCCCCCCEEEeeecCCCCCCccc-----ccccccee
Q 002432 346 ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKAS-LDELMPLPRLTTLEIAVENDNALPEGF-----FVRELERF 413 (922)
Q Consensus 346 ~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 413 (922)
+++++|++|++++|.+.. .. +..++.+++|+.|++++|.....|... .+++|+.|
T Consensus 505 ~~l~~L~~L~Ls~N~l~~-------------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQ-------------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TTCSSCCEEECCSSCCCS-------------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcEEECCCCCCCC-------------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999999999999874 22 688999999999999999987776543 35667665
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=3.1e-13 Score=133.30 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC-ccccCCCCcCCEEEeecCCCcccchhhcCCC
Q 002432 246 NIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD-ITIIGKLKNLEILSLIESDIVEFPEELGKLT 324 (922)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~ 324 (922)
.+|.. |..+++|++|++++|.+..+| .++.+++|++|++++|.+.. |..+..+++|++|++++|+++.+| .+.+++
T Consensus 39 ~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 34443 477888888888888888877 78888888888888888777 666677788888888888888776 577888
Q ss_pred CCCEEeccCCCCCCccCc-chhCCCCCCCEEEccCCcccc
Q 002432 325 KLRLLDLTNCFHLKVIAP-NVIASFTRLEELYMSNCFVEW 363 (922)
Q Consensus 325 ~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~L~~~~~~~ 363 (922)
+|++|++++|. +..++. ..++++++|++|++++|.+..
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 88888888875 666654 347788888888888887653
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=4.9e-11 Score=114.29 Aligned_cols=101 Identities=27% Similarity=0.419 Sum_probs=71.6
Q ss_pred cEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCCC
Q 002432 259 KVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNCF 335 (922)
Q Consensus 259 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 335 (922)
++++++++.+..+|..+. .+|++|++++|.+.. |..|.++++|++|+|++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776654 677777777777766 45677777777777777777777665 4677777777777764
Q ss_pred CCCccCcchhCCCCCCCEEEccCCccc
Q 002432 336 HLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 336 ~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
+..+|.+.++++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66776655677777777777777654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=5.7e-11 Score=113.44 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=74.3
Q ss_pred CcEEEeeCCcCccCchhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEeecCCCcccchh-hcCCCCCCEEeccCC
Q 002432 258 LKVVDLTNMQLFSLPSSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSLIESDIVEFPEE-LGKLTKLRLLDLTNC 334 (922)
Q Consensus 258 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 334 (922)
.++++++++.++.+|..+. .+|++|++++|.++. |..|.++++|++|++++|+++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776653 677777777777776 46677777777777777777777655 477777777777776
Q ss_pred CCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 335 FHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
. +..+|.+.+.++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4 77777665777777777777777654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=6.3e-13 Score=131.06 Aligned_cols=147 Identities=21% Similarity=0.260 Sum_probs=118.7
Q ss_pred cceEEEeecC--CCCCCCCCC-CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCchhhhccCCCCEE
Q 002432 208 KCYAISWIDS--SGGELPEGL-ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLPSSIDLLVNLQTL 284 (922)
Q Consensus 208 ~l~~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 284 (922)
.++...+.+. .+..+|..+ .+++|++|++++|... .+| .|.++++|++|++++|.+..+|..+..+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 3455555544 345555444 8899999999999876 577 4589999999999999999999989899999999
Q ss_pred EccCCCCCCccccCCCCcCCEEEeecCCCcccch--hhcCCCCCCEEeccCCCCCCccCc----------chhCCCCCCC
Q 002432 285 CLDYSTLGDITIIGKLKNLEILSLIESDIVEFPE--ELGKLTKLRLLDLTNCFHLKVIAP----------NVIASFTRLE 352 (922)
Q Consensus 285 ~L~~~~l~~p~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~----------~~l~~L~~L~ 352 (922)
++++|.+..++.+..+++|++|++++|+++.+|. .+.++++|++|++++|. +...++ ..+.++++|+
T Consensus 99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence 9999999994478999999999999999998765 78999999999999986 543322 2367889999
Q ss_pred EEEccCCccc
Q 002432 353 ELYMSNCFVE 362 (922)
Q Consensus 353 ~L~L~~~~~~ 362 (922)
.|+ ++.+.
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 887 44443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.9e-10 Score=108.81 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=75.0
Q ss_pred cEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEe
Q 002432 232 ELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSL 308 (922)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L 308 (922)
+.++++++... .+|..+ .++|++|++++|.++.+ |..|+++++|++|+|++|.+.. | ..|.++++|++|++
T Consensus 15 ~~l~~~~n~l~---~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA---SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC---ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 55666666554 566544 36778888888888776 5567788888888888888777 4 34678888888888
Q ss_pred ecCCCcccchh-hcCCCCCCEEeccCCCCCCccCc
Q 002432 309 IESDIVEFPEE-LGKLTKLRLLDLTNCFHLKVIAP 342 (922)
Q Consensus 309 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~ 342 (922)
++|+++.+|.. +.++++|++|++++|. +...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 88888877765 7788888888888875 554443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.2e-10 Score=122.77 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=103.0
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCC----CCc--ccc---
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTL----GDI--TII--- 297 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l----~~p--~~i--- 297 (922)
+++|+.|.+.. ... .|++..|.++++|+.|++.+|.+..++ ..|..+.++.++.+..... ... ..|
T Consensus 100 ~~~L~~l~L~~-~i~---~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK---NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCC---EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-ccc---chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777776 443 577777777788888888777776654 3566665565555443110 000 000
Q ss_pred -----------------------------------------------CCCCcCCEEEeecCCCcccchh-hcCCCCCCEE
Q 002432 298 -----------------------------------------------GKLKNLEILSLIESDIVEFPEE-LGKLTKLRLL 329 (922)
Q Consensus 298 -----------------------------------------------~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 329 (922)
..+++|+.|++++|+++.+|.. |.++.+|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 0267788888888778877664 7778888888
Q ss_pred eccCCCCCCccCcchhCCCCCCC-EEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCCCCCCcc
Q 002432 330 DLTNCFHLKVIAPNVIASFTRLE-ELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNALPEG 404 (922)
Q Consensus 330 ~l~~~~~l~~~p~~~l~~L~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (922)
++.++ +..++..+|.++++|+ .+++.+ .+.. .....+..+++|+.+++..+....++..
T Consensus 256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~-------------I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTA-------------IEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCE-------------ECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred ECCcc--cceehHHHhhCChhccEEEEEcc-cceE-------------EchhhhhCCccCCEEEeCCCccCccchh
Confidence 88774 7777777788888888 888766 3332 2346677788888888877776666554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=7.5e-10 Score=105.60 Aligned_cols=99 Identities=25% Similarity=0.276 Sum_probs=72.0
Q ss_pred ccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEE
Q 002432 231 LELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILS 307 (922)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~ 307 (922)
.+.++++++... .+|..+ .++|++|++++|.++.+ |..|+.+++|++|+|++|.++. | ..|.++++|++|+
T Consensus 11 ~~~l~~s~n~l~---~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLA---SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC---ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 356666666554 566544 36777888888888776 5567778888888888888777 3 4567888888888
Q ss_pred eecCCCcccchh-hcCCCCCCEEeccCCC
Q 002432 308 LIESDIVEFPEE-LGKLTKLRLLDLTNCF 335 (922)
Q Consensus 308 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 335 (922)
+++|+++.+|.. +.++++|++|++++|.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888888877664 7788888888888875
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=3e-09 Score=113.94 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=85.2
Q ss_pred cccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCC-eEEEecccceEEecCC-ccccc
Q 002432 806 IFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLE-NLNLSFCSYKELFSNG-GQVHL 883 (922)
Q Consensus 806 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~-~L~l~~c~l~~l~~~~-~~~~s 883 (922)
.+++|+.|++++|++..+....|. .+++|++|++.+| +..++...+.++++|+ .+++.+ .+..+.+.. ..+++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~---~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFA---QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTT---TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred hcCCCeEEECCCCCcceecHhhhh---CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 489999999999999888877766 8899999999998 9999999999999999 999998 888886655 34899
Q ss_pred cceEeccccccccccccCCCCCCCcccccc
Q 002432 884 IKKLELICLNDLEYLWIPNSKMGDSILQNL 913 (922)
Q Consensus 884 L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L 913 (922)
|+.+++ ..++++.++...|. .+++|+.+
T Consensus 299 L~~l~l-~~n~i~~I~~~aF~-~~~~L~~l 326 (329)
T 3sb4_A 299 LRYVLA-TGDKITTLGDELFG-NGVPSKLI 326 (329)
T ss_dssp EEEEEE-CSSCCCEECTTTTC-TTCCCCEE
T ss_pred CCEEEe-CCCccCccchhhhc-CCcchhhh
Confidence 999998 55688999988887 65555443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=8.2e-08 Score=104.95 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=121.1
Q ss_pred cccCCCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCC
Q 002432 649 KVVLPNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQ 728 (922)
Q Consensus 649 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 728 (922)
+..+++|+.+++.+++++.++...+. +.+|+.+.+.+ .++.+. ...|.++++|+.+++.+ +++.+.....
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~-~~aF~~~~~L~~l~l~~--~l~~I~~~aF--- 245 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPV--TLKEIG-SQAFLKTSQLKTIEIPE--NVSTIGQEAF--- 245 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCT--TCCEEC-TTTTTTCTTCCCEECCT--TCCEECTTTT---
T ss_pred hhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCC--chheeh-hhHhhCCCCCCEEecCC--CccCcccccc---
Confidence 34577888888888888888666554 47888888874 466663 35577888888888875 4666632111
Q ss_pred CCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCcc-----ccccccccccccccccccCCCCCccee
Q 002432 729 EPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLN-----TFASESFSFHSNEKKQLHVPKQPFFSF 803 (922)
Q Consensus 729 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (922)
.. .+|+.+.|.+ +++.++...+ .+|++|+.+.+.+. .+. .++.. .
T Consensus 246 ----~~-~~L~~i~lp~--~i~~I~~~aF-~~c~~L~~l~l~~~-~~~~~~~~~I~~~---------------------a 295 (401)
T 4fdw_A 246 ----RE-SGITTVKLPN--GVTNIASRAF-YYCPELAEVTTYGS-TFNDDPEAMIHPY---------------------C 295 (401)
T ss_dssp ----TT-CCCSEEEEET--TCCEECTTTT-TTCTTCCEEEEESS-CCCCCTTCEECTT---------------------T
T ss_pred ----cc-CCccEEEeCC--CccEEChhHh-hCCCCCCEEEeCCc-cccCCcccEECHH---------------------H
Confidence 11 5677777743 4555544332 37778888887653 221 23322 2
Q ss_pred eccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc--cc
Q 002432 804 EKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG--QV 881 (922)
Q Consensus 804 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~--~~ 881 (922)
+.++++|+.+++.+ .+..+....|. .+++|+.+.|.+ .+..++...+.++ +|+.+++.+|....+.+... .+
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~---~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLG---GNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTT---TCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhc---CCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 45677777777773 35555555543 667777777744 3666776677777 77777777775555544331 13
Q ss_pred cccceEec
Q 002432 882 HLIKKLEL 889 (922)
Q Consensus 882 ~sL~~L~i 889 (922)
.+++.|.+
T Consensus 370 ~~l~~l~v 377 (401)
T 4fdw_A 370 DDITVIRV 377 (401)
T ss_dssp TTCCEEEE
T ss_pred CCccEEEe
Confidence 45566655
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=9.3e-09 Score=111.16 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=66.3
Q ss_pred EEEeeCC-cCccCchhhhccCCCCEEEccC-CCCCC-c-cccCCCCcCCEEEeecCCCcccch-hhcCCCCCCEEeccCC
Q 002432 260 VVDLTNM-QLFSLPSSIDLLVNLQTLCLDY-STLGD-I-TIIGKLKNLEILSLIESDIVEFPE-ELGKLTKLRLLDLTNC 334 (922)
Q Consensus 260 ~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~-~~l~~-p-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 334 (922)
.++++++ .++.+|. ++.+.+|++|+|++ |.+.. + ..|++|.+|++|+|++|+++.+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 6667777 77777777777775 66666 3 567777777777777777776543 4677777777777776
Q ss_pred CCCCccCcchhCCCCCCCEEEccCCccc
Q 002432 335 FHLKVIAPNVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 335 ~~l~~~p~~~l~~L~~L~~L~L~~~~~~ 362 (922)
. +..+|...+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4 6666665444444 777777766654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=7.8e-10 Score=119.79 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=68.5
Q ss_pred cCcceEEEeecCCCCCCC-----CCC--CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccC-chhh--
Q 002432 206 LKKCYAISWIDSSGGELP-----EGL--ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSL-PSSI-- 275 (922)
Q Consensus 206 ~~~l~~L~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i-- 275 (922)
.+.++.|++++|.+.... ... ..++|+.|++++|.+.. .-...++..+++|+.|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 345667777766653211 100 12455566665554321 11111222334555555555555421 1111
Q ss_pred ---hccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCCCCCccC
Q 002432 276 ---DLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCFHLKVIA 341 (922)
Q Consensus 276 ---~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p 341 (922)
....+|++|+|++|.+.. . ..+..+++|++|+|++|.++. ++..+...++|++|++++|. ++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 123455555555555533 1 223445555555555555442 23344445555555555553 33221
Q ss_pred cc----hhCCCCCCCEEEccCCccc
Q 002432 342 PN----VIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 342 ~~----~l~~L~~L~~L~L~~~~~~ 362 (922)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1233455555555555443
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=4.2e-07 Score=99.30 Aligned_cols=217 Identities=11% Similarity=0.072 Sum_probs=156.5
Q ss_pred CcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhhhccccEEEEecccccceEecccCCCCCCCcc
Q 002432 654 NLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCF 733 (922)
Q Consensus 654 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 733 (922)
+|+.+.+.+ +++.+.... +..+++|+.+++.+ ++++.++. ..+. .++|+.+.+.+ +++.+... .+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~a-F~~c~~L~~l~l~~-n~l~~I~~-~aF~-~~~L~~l~lp~--~l~~I~~~-------aF~ 223 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDI-FYYCYNLKKADLSK-TKITKLPA-STFV-YAGIEEVLLPV--TLKEIGSQ-------AFL 223 (401)
T ss_dssp CCCEEECCT-TCCEECSST-TTTCTTCCEEECTT-SCCSEECT-TTTT-TCCCSEEECCT--TCCEECTT-------TTT
T ss_pred CceEEEeCC-CccEehHHH-hhCcccCCeeecCC-CcceEech-hhEe-ecccCEEEeCC--chheehhh-------Hhh
Confidence 577777765 566664444 34679999999987 57887754 3354 58999999874 57777322 233
Q ss_pred cccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceE
Q 002432 734 AFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEEL 813 (922)
Q Consensus 734 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 813 (922)
.+++|+.+.+.+ +++.+....+ .-++|+.+.+. ++++.++.. .+.++++|+.+
T Consensus 224 ~~~~L~~l~l~~--~l~~I~~~aF--~~~~L~~i~lp--~~i~~I~~~---------------------aF~~c~~L~~l 276 (401)
T 4fdw_A 224 KTSQLKTIEIPE--NVSTIGQEAF--RESGITTVKLP--NGVTNIASR---------------------AFYYCPELAEV 276 (401)
T ss_dssp TCTTCCCEECCT--TCCEECTTTT--TTCCCSEEEEE--TTCCEECTT---------------------TTTTCTTCCEE
T ss_pred CCCCCCEEecCC--CccCcccccc--ccCCccEEEeC--CCccEEChh---------------------HhhCCCCCCEE
Confidence 578899999986 5777766655 33789999995 357777654 35779999999
Q ss_pred eechhhhh-----hhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCcc-ccccceE
Q 002432 814 GLSIKDIM-----MLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGGQ-VHLIKKL 887 (922)
Q Consensus 814 ~l~~~~~~-----~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~~-~~sL~~L 887 (922)
++.++... .+....|. .+++|+.+.|. +.+..++...+.+|++|+.+.+..+ +..+...... + +|+.+
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~---~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLE---GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTT---TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred EeCCccccCCcccEECHHHhh---CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 99887654 45555554 88899999998 5699999999999999999999654 7777555533 5 99999
Q ss_pred eccccccccccccCCCCCCCcccccccEEEeeec
Q 002432 888 ELICLNDLEYLWIPNSKMGDSILQNLEILKTVAR 921 (922)
Q Consensus 888 ~i~~c~~L~~l~~~~~~~~l~~L~~L~~l~l~~~ 921 (922)
++.++ .+..++...|. .++ ..++.|.+-.+
T Consensus 351 ~l~~n-~~~~l~~~~F~-~~~--~~l~~l~vp~~ 380 (401)
T 4fdw_A 351 KVEGT-TPPQVFEKVWY-GFP--DDITVIRVPAE 380 (401)
T ss_dssp EECCS-SCCBCCCSSCC-CSC--TTCCEEEECGG
T ss_pred EEcCC-CCccccccccc-CCC--CCccEEEeCHH
Confidence 99654 66777777666 443 25666666543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=3.6e-08 Score=106.51 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=66.4
Q ss_pred EEccCC-CCcCCCCCChHHhhCCCCCcEEEeeC-CcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcCCEEEe
Q 002432 234 LLLSSE-HSSVDVNIPQRFFTGMRELKVVDLTN-MQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNLEILSL 308 (922)
Q Consensus 234 L~l~~~-~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L~~L~L 308 (922)
++++++ ... .+|. +..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|.+.. |..|.+|++|++|+|
T Consensus 13 v~~~~~n~l~---~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALD---SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCT---TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCC---ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 455554 443 5666 47777777777775 7777665 467777777777777777776 356777777777777
Q ss_pred ecCCCcccchhhcCCCCCCEEeccCCC
Q 002432 309 IESDIVEFPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 309 ~~~~l~~lp~~i~~L~~L~~L~l~~~~ 335 (922)
++|+++.+|..+.....|++|++.+|.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCC
Confidence 777777776654333337777777765
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=3.7e-09 Score=114.48 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=116.9
Q ss_pred CCCccEEEccCCCCcCCCCCChHHhh-----CCCCCcEEEeeCCcCcc--CchhhhccCCCCEEEccCCCCCC--cccc-
Q 002432 228 CPQLELLLLSSEHSSVDVNIPQRFFT-----GMRELKVVDLTNMQLFS--LPSSIDLLVNLQTLCLDYSTLGD--ITII- 297 (922)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~-----~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~--p~~i- 297 (922)
.+.|+.|++++|.+. ......+. ..++|++|+|++|.+.. +..-...+.+|++|+|++|.+.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCC---HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCC---HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 467999999999754 21111122 23799999999999873 22233456789999999999976 3333
Q ss_pred ----CCCCcCCEEEeecCCCcc-----cchhhcCCCCCCEEeccCCCCCCccC----cchhCCCCCCCEEEccCCccccc
Q 002432 298 ----GKLKNLEILSLIESDIVE-----FPEELGKLTKLRLLDLTNCFHLKVIA----PNVIASFTRLEELYMSNCFVEWK 364 (922)
Q Consensus 298 ----~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p----~~~l~~L~~L~~L~L~~~~~~~~ 364 (922)
...++|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~- 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD- 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-
Confidence 457899999999998874 56667889999999999986 65432 1236778899999999998863
Q ss_pred ccccCCcccccccCcccCCCCCCCCEEEeeecCCCC
Q 002432 365 VEDEGSSSKKSKASLDELMPLPRLTTLEIAVENDNA 400 (922)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 400 (922)
.........+...++|++|++++|.+..
T Consensus 226 --------~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 --------TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --------HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --------HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1111345667778899999999998654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=1.8e-05 Score=86.79 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=57.0
Q ss_pred ccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc-cccc
Q 002432 805 KIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG-QVHL 883 (922)
Q Consensus 805 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~-~~~s 883 (922)
..+.+|+.+.+.++ +..+....|. .+++|+.++|.+ .++.++...+.+|++|+.+.+..+ ++.+..... .+++
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~---~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFE---SCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTT---TCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred cccccccccccccc-cceechhhhc---CCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 45667777777543 3344444433 667777777753 366777777777777777777654 555544332 2677
Q ss_pred cceEeccccccccccccCCCCCCCccccc
Q 002432 884 IKKLELICLNDLEYLWIPNSKMGDSILQN 912 (922)
Q Consensus 884 L~~L~i~~c~~L~~l~~~~~~~~l~~L~~ 912 (922)
|+.+++.+ .++.+. ..|. .+++|+.
T Consensus 368 L~~i~lp~--~~~~~~-~~F~-~c~~L~~ 392 (394)
T 4fs7_A 368 LKKVELPK--RLEQYR-YDFE-DTTKFKW 392 (394)
T ss_dssp CCEEEEEG--GGGGGG-GGBC-TTCEEEE
T ss_pred CCEEEECC--CCEEhh-heec-CCCCCcE
Confidence 77777743 234443 2344 4444443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.1e-06 Score=94.14 Aligned_cols=142 Identities=17% Similarity=0.273 Sum_probs=78.7
Q ss_pred HHhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCC----
Q 002432 699 MIKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDK---- 774 (922)
Q Consensus 699 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~---- 774 (922)
++..+|+|++|.|++|..+. +. . ..+++|+.|.|..|..-...........+|+|+.|+++.+.+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~---------~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IG---------K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CC---------S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred HHhcCCCCcEEEEeCCCCce-ec---------c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 45666777777777653221 10 0 125677777776554211110001112578888888864321
Q ss_pred ---ccccccccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcc--
Q 002432 775 ---LNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSAS-- 849 (922)
Q Consensus 775 ---L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~-- 849 (922)
+..+... . ....+|+|+.|++++|.+.......+.....+++|++|+|+.|.+..
T Consensus 236 ~~~~~~l~~~-------------------l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 236 DGDMNVFRPL-------------------F-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp CSCGGGTGGG-------------------S-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred chhHHHHHHH-------------------H-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 1111100 0 01347899999998887653211110001245789999998888776
Q ss_pred ---cchhHHhhcCCCCeEEEecccce
Q 002432 850 ---VPIGLLEKFHGLENLNLSFCSYK 872 (922)
Q Consensus 850 ---lp~~~l~~l~~L~~L~l~~c~l~ 872 (922)
++.. ++.+++|+.|++++|.+.
T Consensus 296 ~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 296 ARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HHHHHhh-cccCCcceEEECCCCcCC
Confidence 2322 257899999999988654
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=8.5e-05 Score=81.30 Aligned_cols=122 Identities=11% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCCCccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCcCccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcC
Q 002432 227 ECPQLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQLFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNL 303 (922)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L 303 (922)
++++|+.+.+..+ .. .|.+..|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+ +.. ...|.....+
T Consensus 69 ~c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 6777888777643 22 567777788888888877644 55553 35666777776655432 222 2334443332
Q ss_pred CEEEeecCCCcccc-hhhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccC
Q 002432 304 EILSLIESDIVEFP-EELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSN 358 (922)
Q Consensus 304 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~ 358 (922)
...... .+..+. ..|.++.+|+.+.+..+ +..++..+|.++.+|+.+.+..
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 222211 122221 23555555555555442 3445555555555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=1.5e-06 Score=92.94 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=110.5
Q ss_pred CcceEEEeecCCCCC---------CCCCC-CCCCccEEEccCCCCc---C----CCCCChHHhhCCCCCcEEEeeCCcCc
Q 002432 207 KKCYAISWIDSSGGE---------LPEGL-ECPQLELLLLSSEHSS---V----DVNIPQRFFTGMRELKVVDLTNMQLF 269 (922)
Q Consensus 207 ~~l~~L~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~---~----~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (922)
.+++.|.+....+.. +.... ++++|+.|.+...... . .+. ...++..+++|+.|+++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEeCCCCc
Confidence 456777776544321 11112 5678888888654221 0 012 3355688899999999888433
Q ss_pred cCchhhhccCCCCEEEccCCCCCC--ccccC--CCCcCCEEEeecC--C------Ccccchhh--cCCCCCCEEeccCCC
Q 002432 270 SLPSSIDLLVNLQTLCLDYSTLGD--ITIIG--KLKNLEILSLIES--D------IVEFPEEL--GKLTKLRLLDLTNCF 335 (922)
Q Consensus 270 ~lp~~i~~L~~L~~L~L~~~~l~~--p~~i~--~L~~L~~L~L~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~ 335 (922)
.+|. + .+.+|+.|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 4554 4 37899999999888765 34443 7899999998632 1 22222222 357899999998876
Q ss_pred CCCc-cCcchh---CCCCCCCEEEccCCcccccccccCCcccccccCcccCCCCCCCCEEEeeecCC
Q 002432 336 HLKV-IAPNVI---ASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDELMPLPRLTTLEIAVEND 398 (922)
Q Consensus 336 ~l~~-~p~~~l---~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (922)
+.. .+.. + ..+++|++|+|+.|.+... ........+.++++|+.|+++.|.+
T Consensus 264 -i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~---------G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 -EQNVVVEM-FLESDILPQLETMDISAGVLTDE---------GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp -THHHHHHH-HHHCSSGGGCSEEECCSSCCBHH---------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred -CchHHHHH-HHhCccCCCCCEEECCCCCCChH---------HHHHHHhhcccCCcceEEECCCCcC
Confidence 432 2222 2 3578899999988876530 0012234446678899999987764
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.8e-06 Score=80.56 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=38.8
Q ss_pred CCcceeeecccceeeeccCCCcccccCccEEEeccCcCccccccHHHHhh----hccccEEEEecccccceE
Q 002432 653 PNLEALELCEINVKSIWHNQTPCCFQRLTRLIVWGCQKLKFMFYASMIKS----LEQLQHLEIRNCTGLQVI 720 (922)
Q Consensus 653 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~l~~l 720 (922)
..|+.|++++|.+++.....+ ..+++|++|++++|..+++-.. ..+.. .++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 357777777776555433332 3567778888888777765321 11222 235777777777666543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.6e-06 Score=78.60 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCChHHhhCCCCCcEEEeeCCcCccC-chhhhccCCCCEEEccCCC-CCC--ccccCCC----CcCCEEEeecC-CCccc
Q 002432 246 NIPQRFFTGMRELKVVDLTNMQLFSL-PSSIDLLVNLQTLCLDYST-LGD--ITIIGKL----KNLEILSLIES-DIVEF 316 (922)
Q Consensus 246 ~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~--p~~i~~L----~~L~~L~L~~~-~l~~l 316 (922)
.+|..... -.+|+.||++++.|+.. -..+..+++|++|+|++|. |++ ...+..+ ++|++|++++| +++.-
T Consensus 52 ~LP~~~~~-~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLD-KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTT-CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCC-CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45543222 34688888888887632 2446778888888888886 665 5666665 36888888877 46621
Q ss_pred -chhhcCCCCCCEEeccCCCCCCc
Q 002432 317 -PEELGKLTKLRLLDLTNCFHLKV 339 (922)
Q Consensus 317 -p~~i~~L~~L~~L~l~~~~~l~~ 339 (922)
-..+.++++|++|++++|..++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 13456777788888887766655
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=4.1e-06 Score=80.62 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=68.0
Q ss_pred HhhCCCCCcEEEeeCC-cCc-----cCchhhhccCCCCEEEccCCCCCC--c----cccCCCCcCCEEEeecCCCcc---
Q 002432 251 FFTGMRELKVVDLTNM-QLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----TIIGKLKNLEILSLIESDIVE--- 315 (922)
Q Consensus 251 ~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~~i~~L~~L~~L~L~~~~l~~--- 315 (922)
++...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. . ..+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677777777777 664 244455566777777777777654 1 334455677777777776662
Q ss_pred --cchhhcCCCCCCEEec--cCCCCCCccCc----chhCCCCCCCEEEccCCccc
Q 002432 316 --FPEELGKLTKLRLLDL--TNCFHLKVIAP----NVIASFTRLEELYMSNCFVE 362 (922)
Q Consensus 316 --lp~~i~~L~~L~~L~l--~~~~~l~~~p~----~~l~~L~~L~~L~L~~~~~~ 362 (922)
+...+...++|++|++ ++|. ++.-.. ..+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455666677777777 5554 443211 12444567777777776553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2.3e-05 Score=79.20 Aligned_cols=78 Identities=29% Similarity=0.340 Sum_probs=47.7
Q ss_pred hCCCCCcEEEeeCCcCccCc---hhhhccCCCCEEEccCCCCCCccccCCCC--cCCEEEeecCCCc-ccc-------hh
Q 002432 253 TGMRELKVVDLTNMQLFSLP---SSIDLLVNLQTLCLDYSTLGDITIIGKLK--NLEILSLIESDIV-EFP-------EE 319 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~l~~p~~i~~L~--~L~~L~L~~~~l~-~lp-------~~ 319 (922)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|.+.....+..+. +|++|++++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45667777777777776543 45566777777777777776643344333 6777777777665 232 12
Q ss_pred hcCCCCCCEEe
Q 002432 320 LGKLTKLRLLD 330 (922)
Q Consensus 320 i~~L~~L~~L~ 330 (922)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666664
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.73 E-value=0.00095 Score=72.89 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=31.8
Q ss_pred ccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecc
Q 002432 805 KIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFC 869 (922)
Q Consensus 805 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c 869 (922)
.++++|+.+.|..+ +..+....|. ++.+|+.+.|.. .+..++...+.+|++|+.+++.++
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~---~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFA---GCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTT---TCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhh---CCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 44556666666432 3333333332 555666666643 255555555666666666666554
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=3.2e-05 Score=74.29 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCCCccEEEccCC-CCcCCC-CCChHHhhCCCCCcEEEeeCCcCcc-----CchhhhccCCCCEEEccCCCCCC------
Q 002432 227 ECPQLELLLLSSE-HSSVDV-NIPQRFFTGMRELKVVDLTNMQLFS-----LPSSIDLLVNLQTLCLDYSTLGD------ 293 (922)
Q Consensus 227 ~~~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~------ 293 (922)
..+.|++|++++| .+...+ ......+...+.|++|+|++|.+.. +...+...++|++|+|++|.|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4567888888877 543100 0112234667889999999998863 45566777889999999999875
Q ss_pred ccccCCCCcCCEEEe--ecCCCcc-----cchhhcCCCCCCEEeccCCC
Q 002432 294 ITIIGKLKNLEILSL--IESDIVE-----FPEELGKLTKLRLLDLTNCF 335 (922)
Q Consensus 294 p~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 335 (922)
...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 256777889999999 7888773 45567777899999999875
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=1.4e-05 Score=80.71 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=60.7
Q ss_pred EEeeCCcCccCchh----hhccCCCCEEEccCCCCCCc----cccCCCCcCCEEEeecCCCcccchhhcCCC--CCCEEe
Q 002432 261 VDLTNMQLFSLPSS----IDLLVNLQTLCLDYSTLGDI----TIIGKLKNLEILSLIESDIVEFPEELGKLT--KLRLLD 330 (922)
Q Consensus 261 L~L~~~~i~~lp~~----i~~L~~L~~L~L~~~~l~~p----~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~ 330 (922)
++++.|....++.. ..++++|++|+|++|.+... ..+..+++|++|+|++|+++.+ ..+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 45556644433332 24678888888888888762 3455788888888888888766 3344444 788888
Q ss_pred ccCCCCCCccCc------chhCCCCCCCEEE
Q 002432 331 LTNCFHLKVIAP------NVIASFTRLEELY 355 (922)
Q Consensus 331 l~~~~~l~~~p~------~~l~~L~~L~~L~ 355 (922)
+.+|.....+|. ..+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 888763333331 2356677777776
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=0.0095 Score=64.85 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=87.3
Q ss_pred CccEEEccCCCCcCCCCCChHHhhCCCCCcEEEeeCCc---CccCc-hhhhccCCCCEEEccCCCCCC--ccccCCCCcC
Q 002432 230 QLELLLLSSEHSSVDVNIPQRFFTGMRELKVVDLTNMQ---LFSLP-SSIDLLVNLQTLCLDYSTLGD--ITIIGKLKNL 303 (922)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~---i~~lp-~~i~~L~~L~~L~L~~~~l~~--p~~i~~L~~L 303 (922)
.|+.+.+... .. .|.+..|.++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ +.. ...|..+.+|
T Consensus 65 ~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 4777777543 22 5677777888888888887653 44553 35667777777666543 443 3567777788
Q ss_pred CEEEeecCCCcccch-hhcCCCCCCEEeccCCCCCCccCcchhCCCCCCCEEEccCCcccccccccCCcccccccCcccC
Q 002432 304 EILSLIESDIVEFPE-ELGKLTKLRLLDLTNCFHLKVIAPNVIASFTRLEELYMSNCFVEWKVEDEGSSSKKSKASLDEL 382 (922)
Q Consensus 304 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l 382 (922)
+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..+...++.. .+|+.+.+...... .....+
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~--------------i~~~af 201 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR--------------IGTNAF 201 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE--------------ECTTTT
T ss_pred ccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc--------------cccchh
Confidence 88877643 444433 4677777888777653 66666665544 56777776543221 122445
Q ss_pred CCCCCCCEEEeeec
Q 002432 383 MPLPRLTTLEIAVE 396 (922)
Q Consensus 383 ~~l~~L~~L~l~~~ 396 (922)
..+..+........
T Consensus 202 ~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 202 SECFALSTITSDSE 215 (394)
T ss_dssp TTCTTCCEEEECCS
T ss_pred hhccccceeccccc
Confidence 55666666555433
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.46 E-value=0.0079 Score=65.09 Aligned_cols=137 Identities=9% Similarity=0.061 Sum_probs=89.0
Q ss_pred ccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccccccccccccccccccCCCCCcceeeccccCcceEe
Q 002432 735 FRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFASESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELG 814 (922)
Q Consensus 735 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 814 (922)
..+|+.+.+.. .++.+.... ...+..|+.+.+.. .++.+... .+..+.+|+.+.
T Consensus 216 ~~~l~~i~~~~--~~~~i~~~~-f~~~~~L~~i~lp~--~v~~I~~~---------------------aF~~~~~l~~i~ 269 (379)
T 4h09_A 216 GKNLKKITITS--GVTTLGDGA-FYGMKALDEIAIPK--NVTSIGSF---------------------LLQNCTALKTLN 269 (379)
T ss_dssp CSSCSEEECCT--TCCEECTTT-TTTCSSCCEEEECT--TCCEECTT---------------------TTTTCTTCCEEE
T ss_pred ccccceeeecc--ceeEEcccc-ccCCccceEEEcCC--CccEeCcc---------------------ccceeehhcccc
Confidence 44555555543 233333322 23667777777753 35555432 235677888888
Q ss_pred echhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccceEEecCCc-cccccceEeccccc
Q 002432 815 LSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSYKELFSNGG-QVHLIKKLELICLN 893 (922)
Q Consensus 815 l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l~~l~~~~~-~~~sL~~L~i~~c~ 893 (922)
+..+ +..+....| ..+++|+.+.+.++.+..++...+.++++|+.+.+.. .++.+..... .+++|+++.|..
T Consensus 270 l~~~-i~~i~~~aF---~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~-- 342 (379)
T 4h09_A 270 FYAK-VKTVPYLLC---SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK-- 342 (379)
T ss_dssp ECCC-CSEECTTTT---TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT--
T ss_pred cccc-ceecccccc---ccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC--
Confidence 8643 333433443 3778999999988889999988899999999999975 4666655442 378888888743
Q ss_pred cccccccCCCC
Q 002432 894 DLEYLWIPNSK 904 (922)
Q Consensus 894 ~L~~l~~~~~~ 904 (922)
.++.+....|.
T Consensus 343 ~v~~I~~~aF~ 353 (379)
T 4h09_A 343 SITLIESGAFE 353 (379)
T ss_dssp TCCEECTTTTT
T ss_pred ccCEEchhHhh
Confidence 46777666555
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.32 E-value=0.022 Score=61.58 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred HhhhccccEEEEecccccceEecccCCCCCCCcccccccceeecccCCCccccCCCcCcCCCCCccEEEEecCCCccccc
Q 002432 700 IKSLEQLQHLEIRNCTGLQVIISEGGPGQEPPCFAFRRVTNISLCHLPELTCLYPGLHTSEWPELKKLEVFSCDKLNTFA 779 (922)
Q Consensus 700 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~ 779 (922)
+....+|+.+.+.. .++.+.. ..+..+..|+.+.+.+ .++.+.... ...+.+|+.+.+.. +++.++
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~-------~~f~~~~~L~~i~lp~--~v~~I~~~a-F~~~~~l~~i~l~~--~i~~i~ 278 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGD-------GAFYGMKALDEIAIPK--NVTSIGSFL-LQNCTALKTLNFYA--KVKTVP 278 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECT-------TTTTTCSSCCEEEECT--TCCEECTTT-TTTCTTCCEEEECC--CCSEEC
T ss_pred cccccccceeeecc--ceeEEcc-------ccccCCccceEEEcCC--CccEeCccc-cceeehhccccccc--cceecc
Confidence 45566677766643 3444421 1223467788888865 355554433 23788899988853 566665
Q ss_pred cccccccccccccccCCCCCcceeeccccCcceEeechhhhhhhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcC
Q 002432 780 SESFSFHSNEKKQLHVPKQPFFSFEKIFPNLEELGLSIKDIMMLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFH 859 (922)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~ 859 (922)
.. .+..+++|+.+.+.++.+..+....|. .+.+|+.+.|.. .++.++...+.+|+
T Consensus 279 ~~---------------------aF~~c~~L~~i~l~~~~i~~I~~~aF~---~c~~L~~i~lp~-~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 279 YL---------------------LCSGCSNLTKVVMDNSAIETLEPRVFM---DCVKLSSVTLPT-ALKTIQVYAFKNCK 333 (379)
T ss_dssp TT---------------------TTTTCTTCCEEEECCTTCCEECTTTTT---TCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred cc---------------------ccccccccccccccccccceehhhhhc---CCCCCCEEEcCc-cccEEHHHHhhCCC
Confidence 43 346788999999988877777666655 788999999865 47888888889999
Q ss_pred CCCeEEEecccceEEecC
Q 002432 860 GLENLNLSFCSYKELFSN 877 (922)
Q Consensus 860 ~L~~L~l~~c~l~~l~~~ 877 (922)
+|+++.+..+ ++.+...
T Consensus 334 ~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESG 350 (379)
T ss_dssp TCCCCCCCTT-CCEECTT
T ss_pred CCCEEEECCc-cCEEchh
Confidence 9999988654 5555333
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.06 E-value=0.018 Score=51.01 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=43.2
Q ss_pred eEeechhhhh-hhcCCCCCCCCCCCCccEEEeecCCCcccchhHHhhcCCCCeEEEecccc
Q 002432 812 ELGLSIKDIM-MLLQGDFPQDHLFGSLKDLEVRDDDSASVPIGLLEKFHGLENLNLSFCSY 871 (922)
Q Consensus 812 ~L~l~~~~~~-~~~~~~~~~~~~~~sL~~L~l~~~~l~~lp~~~l~~l~~L~~L~l~~c~l 871 (922)
.++-+++.+. ...|..+ +.+|+.|+|++|.++.+|.+.+..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666654 1233333 36899999999999999999999999999999999865
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.92 E-value=0.031 Score=49.46 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=26.9
Q ss_pred EEEeeCCcCc--cCchhhhccCCCCEEEccCCCCCC-c-cccCCCCcCCEEEeecCC
Q 002432 260 VVDLTNMQLF--SLPSSIDLLVNLQTLCLDYSTLGD-I-TIIGKLKNLEILSLIESD 312 (922)
Q Consensus 260 ~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~-p-~~i~~L~~L~~L~L~~~~ 312 (922)
+++.+++.++ .+|..+. .+|++|+|++|.|+. + ..|..+.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555666655 5554432 245555555555554 2 444555555555555553
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.18 E-value=0.05 Score=51.63 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=46.2
Q ss_pred hCCCCCcEEEeeCC-cCc-----cCchhhhccCCCCEEEccCCCCCCc------cccCCCCcCCEEEeecCCCc-----c
Q 002432 253 TGMRELKVVDLTNM-QLF-----SLPSSIDLLVNLQTLCLDYSTLGDI------TIIGKLKNLEILSLIESDIV-----E 315 (922)
Q Consensus 253 ~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~p------~~i~~L~~L~~L~L~~~~l~-----~ 315 (922)
.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.|... +.+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44456667777664 553 2334455556677777777776531 33334466777777776665 2
Q ss_pred cchhhcCCCCCCEEeccCC
Q 002432 316 FPEELGKLTKLRLLDLTNC 334 (922)
Q Consensus 316 lp~~i~~L~~L~~L~l~~~ 334 (922)
+-..+..-+.|++|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2334444455667766653
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.28 E-value=0.91 Score=47.81 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=83.7
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHH-HHHHHhcCCCCC
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWK-NALHELRMPTEN 81 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~ 81 (922)
..+++.+|+.+|+.+++...++. .... .+.+.+|++.|+|.|+++..++..+....+...|. ++.+...
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 267 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK----- 267 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-----
Confidence 47899999999999999886621 1122 35678999999999999999987654321222221 1211110
Q ss_pred CCccchHHHH-HHHHHHHhcCCchhHHHHHhhccccCCCchhH-HHHHHHHhcCCcccccHHHHHHHHHHHHHHHHhhcc
Q 002432 82 NFHRELGKAY-TAIKLSYDALKGEQLKKIFQLCSLMPKSFFAS-DLFKYCIGLGIFRGIDMEDARNKLYTLVHELKDSCL 159 (922)
Q Consensus 82 ~~~~~~~~~~-~~l~lsY~~L~~~~lk~cfly~~~f~~~~~~~-~Li~~WiaeG~i~~~~~e~~~~~~~~~i~~L~~~~l 159 (922)
..+. .+-.+.+ . ++. .+..+..+|. +. +.. ++.....+. .- +.+..++ .++++.|++.++
T Consensus 268 ------~~~~~~l~~l~~-~-~~~-~~~~l~~la~--g~-~~~~~l~~~~~~~-~~-~~~~~~~----~~~l~~L~~~gl 329 (350)
T 2qen_A 268 ------GLIMGELEELRR-R-SPR-YVDILRAIAL--GY-NRWSLIRDYLAVK-GT-KIPEPRL----YALLENLKKMNW 329 (350)
T ss_dssp ------HHHHHHHHHHHH-H-CHH-HHHHHHHHHT--TC-CSHHHHHHHHHHT-TC-CCCHHHH----HHHHHHHHHTTS
T ss_pred ------HHHHHHHHHHHh-C-Chh-HHHHHHHHHh--CC-CCHHHHHHHHHHH-hC-CCCHHHH----HHHHHHHHhCCC
Confidence 0011 1112222 2 666 5888888887 32 222 343333221 10 1112222 345889999999
Q ss_pred eecccccceEEe-cHHHHHH
Q 002432 160 LLEGYSCREFSM-HDVVHDV 178 (922)
Q Consensus 160 ~~~~~~~~~~~m-hdli~dl 178 (922)
+... .+.|.+ |.++++.
T Consensus 330 i~~~--~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 330 IVEE--DNTYKIADPVVATV 347 (350)
T ss_dssp EEEE--TTEEEESSHHHHHH
T ss_pred EEec--CCEEEEecHHHHHH
Confidence 8765 244555 6676654
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.16 E-value=1.2 Score=47.08 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=84.4
Q ss_pred ceEeCCCCCHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhcCCCHHHHH-HHHHHhcCCCCCC
Q 002432 5 ANFSIEILNEEEAWRLFEVKLG-NDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRNKTESECWK-NALHELRMPTENN 82 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~~ 82 (922)
..+++.+|+.+|+.+++...++ .....++. .+|+++|+|.|+++..++..+....+...|. ++.+.
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 269 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-------- 269 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH--------
Confidence 5789999999999999998652 11111221 8899999999999999998875432333332 11111
Q ss_pred CccchHH-HHHHHH-HHHh--cCCchhHHHHHhhccccCCCchhH-HHHHHHH-hcCCcccccHHHHHHHHHHHHHHHHh
Q 002432 83 FHRELGK-AYTAIK-LSYD--ALKGEQLKKIFQLCSLMPKSFFAS-DLFKYCI-GLGIFRGIDMEDARNKLYTLVHELKD 156 (922)
Q Consensus 83 ~~~~~~~-~~~~l~-lsY~--~L~~~~lk~cfly~~~f~~~~~~~-~Li~~Wi-aeG~i~~~~~e~~~~~~~~~i~~L~~ 156 (922)
... +...+. +.|+ .+|+. .|..+..+|. +. .. .+....- ..|. +.+..+ ..++++.|++
T Consensus 270 ----~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~--g~--~~~~l~~~~~~~~g~--~~~~~~----~~~~L~~L~~ 334 (357)
T 2fna_A 270 ----AKKLILKEFENFLHGREIARKR-YLNIMRTLSK--CG--KWSDVKRALELEEGI--EISDSE----IYNYLTQLTK 334 (357)
T ss_dssp ----HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--CB--CHHHHHHHHHHHHCS--CCCHHH----HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhccccccHH-HHHHHHHHHc--CC--CHHHHHHHHHHhcCC--CCCHHH----HHHHHHHHHh
Confidence 111 211222 2221 67777 5888888887 32 22 3322110 1121 011122 3345899999
Q ss_pred hcceecccccceEEe-cHHHHHH
Q 002432 157 SCLLLEGYSCREFSM-HDVVHDV 178 (922)
Q Consensus 157 ~~l~~~~~~~~~~~m-hdli~dl 178 (922)
.+++...+ +.|.+ |.++++.
T Consensus 335 ~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESS--SCEEESSHHHHHH
T ss_pred CCCEEecC--CEEEecCHHHHHh
Confidence 99987652 44654 6777764
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.92 E-value=0.37 Score=45.61 Aligned_cols=106 Identities=9% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCccEEEccCC-CCcCCC-CCChHHhhCCCCCcEEEeeCCcCc-----cCchhhhccCCCCEEEccCCCCCC--c----c
Q 002432 229 PQLELLLLSSE-HSSVDV-NIPQRFFTGMRELKVVDLTNMQLF-----SLPSSIDLLVNLQTLCLDYSTLGD--I----T 295 (922)
Q Consensus 229 ~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--p----~ 295 (922)
+.|+.|+++++ .+...| ......+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|.. . +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46677777664 322100 011222356678899999998886 345566667789999999999875 1 4
Q ss_pred ccCCCCcCCEEEeecCC---Cc-----ccchhhcCCCCCCEEeccCC
Q 002432 296 IIGKLKNLEILSLIESD---IV-----EFPEELGKLTKLRLLDLTNC 334 (922)
Q Consensus 296 ~i~~L~~L~~L~L~~~~---l~-----~lp~~i~~L~~L~~L~l~~~ 334 (922)
.+..-+.|++|+|+++. +. .+-..+..-+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 56666779999998653 33 23334555667788877654
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.95 E-value=3.8 Score=44.16 Aligned_cols=135 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred EeCCCCCHHHHHHHHHHHh---CCC-CCChhhHHHHHHHHHHhC------CCcchHHHHHHHh---h---cC--CCHHHH
Q 002432 7 FSIEILNEEEAWRLFEVKL---GND-DLIPRMKSTATHIVKECG------GLPIAIEPIAKAL---R---NK--TESECW 68 (922)
Q Consensus 7 ~~l~~L~~~~~~~Lf~~~~---~~~-~~~~~~~~~~~~i~~~c~------glPlai~~~g~~L---~---~~--~~~~~W 68 (922)
+++++++.++++++|..++ +.. ... .+....|+++|+ |.|..+..+.... + .. -+.+.+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v 286 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 286 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 8999999999999998776 221 122 457888999999 9997655544322 1 11 134445
Q ss_pred HHHHHHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-C--CCchhH-HHHHHHH--h---cCCccccc
Q 002432 69 KNALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-P--KSFFAS-DLFKYCI--G---LGIFRGID 139 (922)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~--~~~~~~-~Li~~Wi--a---eG~i~~~~ 139 (922)
..++.... . ...+.-+++.||.+ .|.++..+|.+ . +..+.. ++...|. + .|. .+..
T Consensus 287 ~~~~~~~~----~---------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 351 (412)
T 1w5s_A 287 RKAVSENE----A---------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRG 351 (412)
T ss_dssp HHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCC
T ss_pred HHHHHHHh----c---------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCC
Confidence 44444321 0 22334466789998 58888888865 2 233433 4444442 2 121 1111
Q ss_pred HHHHHHHHHHHHHHHHhhcceecc
Q 002432 140 MEDARNKLYTLVHELKDSCLLLEG 163 (922)
Q Consensus 140 ~e~~~~~~~~~i~~L~~~~l~~~~ 163 (922)
.. .+.+++++|++.+++...
T Consensus 352 ~~----~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 352 YT----QYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HH----HHHHHHHHHHHTTSEEEE
T ss_pred HH----HHHHHHHHHHhCCCEEee
Confidence 12 233468999999998653
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=68.07 E-value=9.5 Score=39.33 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=47.5
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHhCCCcchHHHHHHHhhc------C--CCHHHHHHHHHHh
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGNDDLIPRMKSTATHIVKECGGLPIAIEPIAKALRN------K--TESECWKNALHEL 75 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~~------~--~~~~~W~~~l~~~ 75 (922)
.++.+.+++.+|..+++.+.+...... --.+....++++++|.|-.+..+...+.. . -+.+....++..+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 578999999999999999888221111 11356788999999999888766655421 1 1455566665554
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.90 E-value=1.2e+02 Score=31.61 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=76.8
Q ss_pred ceEeCCCCCHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHHhC---CCcc-hHHHHHHHh--hc---CCCHHHHHHH
Q 002432 5 ANFSIEILNEEEAWRLFEVKLG----NDDLIPRMKSTATHIVKECG---GLPI-AIEPIAKAL--RN---KTESECWKNA 71 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~g~~L--~~---~~~~~~W~~~ 71 (922)
..+++++++.++..++|..++. ..... .+..+.|+++|+ |-|- |+.++-... +. .-+.+++..+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 3889999999999999999872 12222 345677788887 8766 444433332 21 2267788877
Q ss_pred HHHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhccc-cCCCchhHHHHHHHHhcCCcccccHHHHHHHHHHH
Q 002432 72 LHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSL-MPKSFFASDLFKYCIGLGIFRGIDMEDARNKLYTL 150 (922)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~-f~~~~~~~~Li~~WiaeG~i~~~~~e~~~~~~~~~ 150 (922)
++... ...+.-+++.|+.++ |..+.-++. +.+..+.+.....--..| +.+... ..+.++
T Consensus 267 ~~~~~--------------~~~~~~~~~~l~~~~-~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~~~~----~~~~~~ 326 (384)
T 2qby_B 267 IVDYE--------------QERLIEAVKALPFHY-KLALRSLIESEDVMSAHKMYTDLCNKFK-QKPLSY----RRFSDI 326 (384)
T ss_dssp HHHHH--------------HHHHHHHHHSSCHHH-HHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCCCCH----HHHHHH
T ss_pred HHHHh--------------cchHHHHHHcCCHHH-HHHHHHHHHhcccChHHHHHHHHHHHcC-CCCCCH----HHHHHH
Confidence 77632 234566788999873 444443444 221122111111111223 222222 234456
Q ss_pred HHHHHhhcceec
Q 002432 151 VHELKDSCLLLE 162 (922)
Q Consensus 151 i~~L~~~~l~~~ 162 (922)
++.|++++++..
T Consensus 327 l~~L~~~gli~~ 338 (384)
T 2qby_B 327 ISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHhCCCEEE
Confidence 889999999875
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=50.62 E-value=20 Score=34.61 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=41.2
Q ss_pred ceEeCCCCCHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCCcchHHHHHHHhh
Q 002432 5 ANFSIEILNEEEAWRLFEVKLGN--DDLIPRMKSTATHIVKECGGLPIAIEPIAKALR 60 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPlai~~~g~~L~ 60 (922)
..+++++++.++.++++..++.. .... ++....|++.|+|.|..+..+...+.
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 47899999999999999998822 1222 35678999999999999887765543
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=48.05 E-value=1.1e+02 Score=31.72 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=77.3
Q ss_pred ceEeCCCCCHHHHHHHHHHHhC---C-CCCChhhHHHHHHHHHHhC---CCc-chHHHHHHHh--h---cC--CCHHHHH
Q 002432 5 ANFSIEILNEEEAWRLFEVKLG---N-DDLIPRMKSTATHIVKECG---GLP-IAIEPIAKAL--R---NK--TESECWK 69 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~---glP-lai~~~g~~L--~---~~--~~~~~W~ 69 (922)
..+.+++++.++..+++..++. . .... .+..+.|+++++ |-| .|+.++.... + ++ -+.++++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 4788999999999999999862 1 2222 245677888887 998 3333333222 1 11 2667777
Q ss_pred HHHHHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcc-ccCC-CchhH-HHHHHH----HhcCCcccccHHH
Q 002432 70 NALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCS-LMPK-SFFAS-DLFKYC----IGLGIFRGIDMED 142 (922)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~-~f~~-~~~~~-~Li~~W----iaeG~i~~~~~e~ 142 (922)
.+++... ...+.-++..||.++ |..+...+ ++.+ ..+.. ++.+.. -..| +.+..
T Consensus 271 ~a~~~~~--------------~~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 331 (387)
T 2v1u_A 271 SARAEIE--------------RDRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVT--- 331 (387)
T ss_dssp HHHHHHH--------------HHHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCC---
T ss_pred HHHHHHh--------------hchHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCC---
Confidence 7766532 224556788999873 55444444 3322 22222 333322 1223 22222
Q ss_pred HHHHHHHHHHHHHhhcceec
Q 002432 143 ARNKLYTLVHELKDSCLLLE 162 (922)
Q Consensus 143 ~~~~~~~~i~~L~~~~l~~~ 162 (922)
...+.++++.|...+++..
T Consensus 332 -~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 332 -LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp -HHHHHHHHHHHHHTTSEEE
T ss_pred -HHHHHHHHHHHHhCCCeEE
Confidence 2334456899999999875
No 176
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=31.30 E-value=21 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=15.6
Q ss_pred HhCCCcchHHHHHHHhhcC
Q 002432 44 ECGGLPIAIEPIAKALRNK 62 (922)
Q Consensus 44 ~c~glPlai~~~g~~L~~~ 62 (922)
|-+-+|||+.+.|+.++.+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3457999999999988765
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.06 E-value=2.2e+02 Score=29.43 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=74.0
Q ss_pred ceEeCCCCCHHHHHHHHHHHh---C-CCCCChhhHHHHHHHHHHhC---CCcchHHH-HHHHh--h---c--CCCHHHHH
Q 002432 5 ANFSIEILNEEEAWRLFEVKL---G-NDDLIPRMKSTATHIVKECG---GLPIAIEP-IAKAL--R---N--KTESECWK 69 (922)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~---glPlai~~-~g~~L--~---~--~~~~~~W~ 69 (922)
..+++++++.++.++++..++ . ..... .++...|+++++ |-|..+.. +.... + . +-+.+.++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 478999999999999999876 2 12222 355667777777 98884433 32222 1 1 12566666
Q ss_pred HHHHHhcCCCCCCCccchHHHHHHHHHHHhcCCchhHHHHHhhcccc-C-CC-chhH-HHHHHH--Hh--cCCcccccHH
Q 002432 70 NALHELRMPTENNFHRELGKAYTAIKLSYDALKGEQLKKIFQLCSLM-P-KS-FFAS-DLFKYC--IG--LGIFRGIDME 141 (922)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~l~lsY~~L~~~~lk~cfly~~~f-~-~~-~~~~-~Li~~W--ia--eG~i~~~~~e 141 (922)
.+++... ...+.-.+..+|.++ +..+..++.. + +. .+.. ++.+.. ++ -| +.+...
T Consensus 267 ~a~~~~~--------------~~~~~~~~~~l~~~~-~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~- 329 (386)
T 2qby_A 267 MAKEEIE--------------RDRVRDIILTLPFHS-KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQ- 329 (386)
T ss_dssp HHHHHHH--------------HHHHHHHHHTSCHHH-HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCH-
T ss_pred HHHHHHh--------------hchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCH-
Confidence 6655531 234566678898873 5555555532 2 21 1211 222221 11 12 111111
Q ss_pred HHHHHHHHHHHHHHhhcceec
Q 002432 142 DARNKLYTLVHELKDSCLLLE 162 (922)
Q Consensus 142 ~~~~~~~~~i~~L~~~~l~~~ 162 (922)
..+..+++.|.+.+++..
T Consensus 330 ---~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 330 ---RRVSDIINELDMVGILTA 347 (386)
T ss_dssp ---HHHHHHHHHHHHHTSEEE
T ss_pred ---HHHHHHHHHHHhCCCEEE
Confidence 223445888999999864
Done!