BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002434
(922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 356 bits (913), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 192/527 (36%), Positives = 297/527 (56%), Gaps = 4/527 (0%)
Query: 25 VEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY 84
+E ++ A Y I GV +I+VS W L RQ IR ++ ++NQ++ +FD +
Sbjct: 103 LEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162
Query: 85 GNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFI 144
+ G++ +++ DV I + +K+G + MATFF G I F W++ L+ L P +
Sbjct: 163 -DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 145 VAAGGISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATL 204
+ GI L + ++ IRT+ AF + Y +L+
Sbjct: 222 GLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 205 RYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGL 264
R GI ++ + +G + L S AL W G LV + G+++T F+V++ +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV 341
Query: 265 NQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRP 322
QA+ N +F R AAY ++++I S ++ G+ ++ GN+EF+N++FSY SR
Sbjct: 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRK 401
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E+ IL G L V + + VALVG +G GKS+ + LM+R YDP G V +DG++I+ + + +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
LR IG+V+QEP L + +I +NI YGR D T+D+IE+A K A+A+ FI L ++T VG
Sbjct: 462 LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
G L+ QK +++IARA++ NP ILLLDE T LD E+E VQ ALD GR+TI+I
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI 581
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548
A RLS +RNAD IA D G + E G HDEL+ +Y +L+ + A
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG 628
Score = 299 bits (766), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/498 (34%), Positives = 267/498 (53%), Gaps = 6/498 (1%)
Query: 58 GERQTAVIRSRYVQVLLNQDMSFFDTYGNN-GDIVSQVLSDVLLIQSALSEKVGNYIHNM 116
GE T +R + +L QD+S+FD N G + +++ +D ++ A ++ N+
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXXXXXXXXXXX 176
A +G+ I+ + WQ+ L+ L P I AG + L A
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 177 VSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVG 236
+ RT+ + T E + YA SLQ R + + V G+ FT + S A G
Sbjct: 897 IENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFG 956
Query: 237 RFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTN 296
+LVT ++ A++ + + Q ++ + + ++A + +I ++ +
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS 1016
Query: 297 YDGNTLPS--VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354
Y L + GN++F V F+Y +RP IP+L G L V + +ALVG +G GKS+++
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG---RDA 411
L+ERFYDP G V LDG+ IK L ++WLR+Q+G+V+QEP L SI +NIAYG R
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136
Query: 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
+ ++I AAK A+ H FI SL Y T+VG G L+ QK +++IARA++ P ILLLD
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
E T LD E+E+ VQEALD GR+ I+IA RLS I+NAD I V+ G++ E GTH +L
Sbjct: 1197 EATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Query: 532 LATGDLYAELLKCEEAAK 549
LA +Y ++ + AK
Sbjct: 1257 LAQKGIYFSMVSVQAGAK 1274
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 683 RSHSQTFSRPHSHSDDFPTKVREEESKHQKAP--SFWRLAELSFAEWLYAVLGSIGAAIF 740
RS ++ PH TK E+ + P SFWR+ +L+ EW Y V+G A I
Sbjct: 662 RSTRKSICGPHDQDRKLSTK----EALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIIN 717
Query: 741 GSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMG 800
G P + + +V + R+ N + L+ +G+++ + FLQ F FG G
Sbjct: 718 GGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAG 777
Query: 801 EKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSA 860
E +T+R+R M+F +MLR +V WFD+ +N+ L+ RLANDA V+ A +RL++ Q+ A
Sbjct: 778 EILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIA 837
Query: 861 AVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSDAIL 906
+ +II ++ W+L L+ LA +PI+ AIA V + MLS L
Sbjct: 838 NLGTGIIISLIYGWQLTLLLLAIVPII---AIAGVVEMKMLSGQAL 880
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 714 PSFWRLAELSFAEWL---YAVLGSIGAAIFGSFNPLLAYVIGLIVTAY------------ 758
P+ L +A WL Y ++G++ A I G PL+ + G + ++
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 759 -YKPEERH---HLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSA 814
+ ++R L EE+ + +G ++ ++Q ++ + + ++R+ F A
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 815 MLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874
++ E+GWFD + L+ RL +D + + +++ +F Q A IIG W
Sbjct: 151 IMNQEIGWFDVHD--VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 875 RLALVALATLPILSLSAIAQVCTVTMLSDAILCNFTK 911
+L LV LA P+L LSA ++ +D L + K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAK 245
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 356 bits (913), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 192/527 (36%), Positives = 297/527 (56%), Gaps = 4/527 (0%)
Query: 25 VEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY 84
+E ++ A Y I GV +I+VS W L RQ IR ++ ++NQ++ +FD +
Sbjct: 103 LEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162
Query: 85 GNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFI 144
+ G++ +++ DV I + +K+G + MATFF G I F W++ L+ L P +
Sbjct: 163 -DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 145 VAAGGISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATL 204
+ GI L + ++ IRT+ AF + Y +L+
Sbjct: 222 GLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 205 RYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGL 264
R GI ++ + +G + L S AL W G LV + G+++T F+V++ +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV 341
Query: 265 NQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRP 322
QA+ N +F R AAY ++++I S ++ G+ ++ GN+EF+N++FSY SR
Sbjct: 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRK 401
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E+ IL G L V + + VALVG +G GKS+ + LM+R YDP G V +DG++I+ + + +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
LR IG+V+QEP L + +I +NI YGR D T+D+IE+A K A+A+ FI L ++T VG
Sbjct: 462 LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
G L+ QK +++IARA++ NP ILLLDE T LD E+E VQ ALD GR+TI+I
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI 581
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548
A RLS +RNAD IA D G + E G HDEL+ +Y +L+ + A
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG 628
Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 174/498 (34%), Positives = 267/498 (53%), Gaps = 6/498 (1%)
Query: 58 GERQTAVIRSRYVQVLLNQDMSFFDTYGNN-GDIVSQVLSDVLLIQSALSEKVGNYIHNM 116
GE T +R + +L QD+S+FD N G + +++ +D ++ A ++ N+
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXXXXXXXXXXX 176
A +G+ I+ + WQ+ L+ L P I AG + L A
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 177 VSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVG 236
+ RT+ + T E + YA SLQ R + + V G+ FT + S A G
Sbjct: 897 IENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956
Query: 237 RFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTN 296
+LVT ++ A++ + + Q ++ + + ++A + +I ++ +
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS 1016
Query: 297 YDGNTLPS--VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354
Y L + GN++F V F+Y +RP IP+L G L V + +ALVG +G GKS+++
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG---RDA 411
L+ERFYDP G V LDG+ IK L ++WLR+Q+G+V+QEP L SI +NIAYG R
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136
Query: 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
+ ++I AAK A+ H FI SL Y T+VG G L+ QK +++IARA++ P ILLLD
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
E T LD E+E+ VQEALD GR+ I+IA RLS I+NAD I V+ G++ E GTH +L
Sbjct: 1197 EATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Query: 532 LATGDLYAELLKCEEAAK 549
LA +Y ++ + AK
Sbjct: 1257 LAQKGIYFSMVSVQAGAK 1274
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 683 RSHSQTFSRPHSHSDDFPTKVREEESKHQKAP--SFWRLAELSFAEWLYAVLGSIGAAIF 740
RS ++ PH TK E+ + P SFWR+ +L+ EW Y V+G A I
Sbjct: 662 RSTRKSICGPHDQDRKLSTK----EALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIIN 717
Query: 741 GSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMG 800
G P + + +V + R+ N + L+ +G+++ + FLQ F FG G
Sbjct: 718 GGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAG 777
Query: 801 EKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSA 860
E +T+R+R M+F +MLR +V WFD+ +N+ L+ RLANDA V+ A +RL++ Q+ A
Sbjct: 778 EILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIA 837
Query: 861 AVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCTVTMLSDAIL 906
+ +II ++ W+L L+ LA +PI+ AIA V + MLS L
Sbjct: 838 NLGTGIIISLIYGWQLTLLLLAIVPII---AIAGVVEMKMLSGQAL 880
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 714 PSFWRLAELSFAEWL---YAVLGSIGAAIFGSFNPLLAYVIGLIVTAY------------ 758
P+ L +A WL Y ++G++ A I G PL+ + G + ++
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 759 -YKPEERH---HLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSA 814
+ ++R L EE+ + +G ++ ++Q ++ + + ++R+ F A
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 815 MLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874
++ E+GWFD + L+ RL +D + + +++ +F Q A IIG W
Sbjct: 151 IMNQEIGWFDVHD--VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 875 RLALVALATLPILSLSAIAQVCTVTMLSDAILCNFTK 911
+L LV LA P+L LSA ++ +D L + K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAK 245
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 342 bits (878), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 237/854 (27%), Positives = 399/854 (46%), Gaps = 96/854 (11%)
Query: 42 GVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLI 101
G++AAG I V+C++ E+ +R +V+ +L Q++S+FDT ++G + +++ ++ +
Sbjct: 148 GMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERV 206
Query: 102 QSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAEN 161
+ +K+G ++ F +G +AF + WQ+ L+ L P G + A
Sbjct: 207 KEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIR 266
Query: 162 XXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFT 221
+S IRT+ + Y+T+++ + G+L L G+ G
Sbjct: 267 ETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAM 326
Query: 222 YGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAA 281
S AL ++G V + G+++T +V++ + L A + AA
Sbjct: 327 QASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAA 386
Query: 282 YRLYEMISRSS--STTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKA 339
+YE++ R +++ G + G+I NV+F+Y SRP++PIL G L V A +
Sbjct: 387 SGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT 446
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSL 399
VALVG +G GKS+II L+ R+YD G++ +DG +++++ LE+LR + +V+QEPAL +
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506
Query: 400 SIRDNIAYGRDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458
+I +NI+ G++ T +++ A K+A+A FI +L GY T VG G L+ QK +++IA
Sbjct: 507 TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566
Query: 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518
RA++ NP ILLLDE T LD E+E VQ+ALD GR+TIIIA RLS IRNAD I
Sbjct: 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK 626
Query: 519 EGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQ 578
G++ E+G H L+A LY +L+ + TF DS+A F
Sbjct: 627 NGQVVEVGDHRALMAQQGLYYDLVTAQ------------------TFTDAVDSAAEGKFS 668
Query: 579 EXXXXXXXXXXXXQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRR 638
EN + ++ E + R
Sbjct: 669 R------------------------------------------ENSVARQTSEHE-GLSR 685
Query: 639 QDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDD 698
Q S EM D+ + R ++ GS P+ D K ER SR
Sbjct: 686 QAS-EMD-------DIMNRVRSSTIGSITNGPV-----IDEKEERIGKDALSR------- 725
Query: 699 FPTKVREEESKHQKAPSF---WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIV 755
K EE+ QK F + + + ++ +IG I+ +++ + +
Sbjct: 726 --LKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFA 783
Query: 756 TAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAM 815
+ H W L+ + + +FL F+ GI E +T +R +F +
Sbjct: 784 GNPADFLSQGHF------WALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNV 837
Query: 816 LRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875
L +G+FD +N++ +S RLA D +R A R S I +++ + + W+
Sbjct: 838 LSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQ 897
Query: 876 LALVALATLPILSL 889
+AL+ +A LPI++
Sbjct: 898 MALLIIAILPIVAF 911
Score = 265 bits (678), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 267/505 (52%), Gaps = 15/505 (2%)
Query: 56 LTGERQTAVIRSRYVQVLLNQDMSFFDTYGN-NGDIVSQVLSDVLLIQSALSEKVGNYIH 114
+ E T +R++ + +L+Q + FFD+ N +G I +++ +DV +++A+ + I
Sbjct: 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVIT 879
Query: 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXXXXXXXXX 174
+ + +G+ +AF WQ+AL+ + P + +
Sbjct: 880 TLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAI 939
Query: 175 XXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLA------ICS 228
+ +RT+ A E ++ L + I + +QGL +YG A + +
Sbjct: 940 EAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGL----SYGCASSVLYLLNT 995
Query: 229 CALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMI 288
CA ++ + + ++ ++A+ +S L A + F + + A ++ M+
Sbjct: 996 CAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055
Query: 289 SRSSSTTNYD-GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347
+ S + ++G + F+NV F+Y RPEI IL G +V + +ALVG +G
Sbjct: 1056 RKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115
Query: 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY 407
GKS+++ L+ERFYD GE+ +DG IK L E RSQI +V+QEP L SI +NI Y
Sbjct: 1116 CGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY 1175
Query: 408 GRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464
G D T+ Q+EEAA++A+ H FI+ L +G+ET+VG G L+ QK +++IARA++ N
Sbjct: 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235
Query: 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524
P ILLLDE T LD E+E+ VQEALD GR+ I+IA RL+ + NAD IAV+ G + E
Sbjct: 1236 PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295
Query: 525 MGTHDELLATGDLYAELLKCEEAAK 549
GTH +L++ Y +L + + K
Sbjct: 1296 KGTHTQLMSEKGAYYKLTQKQMTEK 1320
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 704 REEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTA------ 757
+EE P +R + E L +G++ A I G+ PL++ + G + A
Sbjct: 53 KEEVVNKVSIPQLYRYT--TTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQI 110
Query: 758 ---------------YYKPEERHHLREEVNKWCLIIACM---GVVTVVANFLQHFYFGIM 799
Y K + H + V + + M G +TV + Y +
Sbjct: 111 VINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTC----YLY---V 163
Query: 800 GEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDS 859
E+M R+RR ++LR E+ WFD N + TL+ +L ++ V+ +++ + Q
Sbjct: 164 AEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKIGMAFQYL 221
Query: 860 AAVIVAVIIGMLLEWRLALVALATLPILSLSAIA 893
+ I I+ W+L LV LA PI +L A
Sbjct: 222 SQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFA 255
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/522 (33%), Positives = 283/522 (54%), Gaps = 12/522 (2%)
Query: 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIV 91
L L V++ G AA I V +G+R +R+ +L Q+++FFD G+++
Sbjct: 66 LGLSAVFLCGA--AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELI 122
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGIS 151
+++ SD L+ +++E + + + A G+++ F +A L P + I
Sbjct: 123 NRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIY 182
Query: 152 NIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211
+L +L + + +RT+ AF E YA+ + ++ +
Sbjct: 183 GRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 242
Query: 212 LVQGLGLGFTYGLAICSCALQ-LWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270
+ G T GL+ L L+ G L+ GE+ + L G+ + ++
Sbjct: 243 FARAGFFGAT-GLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILS 328
+ +G A RL+E++ R +G L S G +EF+NV+F+Y +RPE+PI
Sbjct: 302 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 361
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
F L++P+ ALVG +GSGKS+++ L+ R YDP G + LDG +I+ L WLRS+IG
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421
Query: 389 LVTQEPALLSLSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
V+QEP L S SI +NIAYG D T ++I+ A++A+A FI + +G+ T VG G
Sbjct: 422 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504
+ L+ QK +++IARA+L NP ILLLDE T LD E E VQEALD LM GR+ ++IA R
Sbjct: 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR 541
Query: 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKCE 545
LS I+NA+ +AV+D+G++ E G H+ELL+ + +Y +L+ +
Sbjct: 542 LSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 769 EEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEEN 828
+ + + CL ++ + + AN ++ + G+++ R+R +FS++LR EV +FD+
Sbjct: 59 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRT 118
Query: 829 SADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILS 888
L RL++D + + + LS ++ A V + + + LA L+ +P +S
Sbjct: 119 G--ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVS 176
Query: 889 LSAI 892
+ A+
Sbjct: 177 IIAV 180
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 275 bits (704), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/522 (33%), Positives = 282/522 (54%), Gaps = 12/522 (2%)
Query: 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIV 91
L L V++ G AA I V +G+R +R+ +L Q+++FFD G+++
Sbjct: 97 LGLSAVFLCGA--AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELI 153
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGIS 151
+++ SD L+ +++E + + + A G+++ F +A L P + I
Sbjct: 154 NRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIY 213
Query: 152 NIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211
+L +L + + +RT+ AF E YA+ + ++ +
Sbjct: 214 GRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 273
Query: 212 LVQGLGLGFTYGLAICSCALQ-LWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270
+ G T GL+ L L+ G L+ GE+ + L G+ + ++
Sbjct: 274 FARAGFFGAT-GLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILS 328
+ +G A RL+E++ R +G L S G +EF+NV+F+Y +RPE+PI
Sbjct: 333 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 392
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
F L++P+ ALVG +GSGKS+++ L+ R YDP G + LDG +I+ L WLRS+IG
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 452
Query: 389 LVTQEPALLSLSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
V+QEP L S SI +NIAYG D T ++I+ A++A+A FI + +G+ T VG G
Sbjct: 453 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 512
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504
+ L+ QK +++IARA+L NP ILLLDE T LD E E VQEALD LM GR+ ++IA
Sbjct: 513 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
Query: 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKCE 545
LS I+NA+ +AV+D+G++ E G H+ELL+ + +Y +L+ +
Sbjct: 573 LSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 769 EEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEEN 828
+ + + CL ++ + + AN ++ + G+++ R+R +FS++LR EV +FD+
Sbjct: 90 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRT 149
Query: 829 SADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILS 888
L RL++D + + + LS ++ A V + + + LA L+ +P +S
Sbjct: 150 G--ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVS 207
Query: 889 LSAI 892
+ A+
Sbjct: 208 IIAV 211
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 151/524 (28%), Positives = 268/524 (51%), Gaps = 10/524 (1%)
Query: 25 VEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY 84
V VW+ + + ++ + G ++ C + +R R ++ +SFFD
Sbjct: 63 VLVWMPLVVIGLMILRG---ITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ 119
Query: 85 GNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFI 144
+ G ++S++ D + S+ S + + A+ + F WQ+++I + P +
Sbjct: 120 -STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIV 178
Query: 145 VAAGGISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATL 204
A + + +++N + + + F + + +
Sbjct: 179 SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238
Query: 205 RYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGL 264
G+ + + +A + A L+ F + G I T +F+ +++ +
Sbjct: 239 LQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI-TVVFSSMIALMRP 297
Query: 265 NQAATNFYS-FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPE 323
++ TN + F +G A L+ ++ S + + G++EFRNV F+Y R +
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFTILD-SEQEKDEGKRVIERATGDVEFRNVTFTYPGR-D 355
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383
+P L L +PA K VALVGR+GSGKS+I L+ RFYD GE+L+DG +++ L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASL 415
Query: 384 RSQIGLVTQEPALLSLSIRDNIAYGRDA--TLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
R+Q+ LV+Q L + ++ +NIAY R + +QIEEAA++A+A FI+ ++ G +T +G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
G+ L+ Q+ +++IARA+L + IL+LDE T LD E+ERA+Q ALD L R++++I
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545
A RLS I AD I V+++G + E GTH++LL +YA+L K +
Sbjct: 536 AHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSM 835
L++ + ++ + +++ + + K+ +RR +F M+ V +FD++ S TL
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTLLS 126
Query: 836 RLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLS 890
R+ D+ V ++ S L +++ A++I I+ W+L+++ + PI+S++
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIA 181
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 225 bits (574), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 152/524 (29%), Positives = 268/524 (51%), Gaps = 10/524 (1%)
Query: 25 VEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTY 84
V +W+ + + ++ + G +I C + +R R ++ ++FFD
Sbjct: 63 VLLWMPLVVIGLMILRG---ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119
Query: 85 GNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFI 144
+ G ++S++ D + S+ S + + A+ + F WQ+++I + P +
Sbjct: 120 -STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV 178
Query: 145 VAAGGISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATL 204
A + + +++N + + + F + + +
Sbjct: 179 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMR 238
Query: 205 RYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGL 264
G+ + + +A + A L+ F + G I T +F+ +++ +
Sbjct: 239 LQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI-TVVFSSMIALMRP 297
Query: 265 NQAATNFYS-FDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPE 323
++ TN + F +G A L+ ++ S + + G++EFRNV F+Y R E
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFAILD-SEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-E 355
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383
+P L L +PA K VALVGR+GSGKS+I L+ RFYD G +L+DG +++ L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 384 RSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
R+Q+ LV+Q L + ++ +NIAY R + + +QIEEAA++A+A FI+ ++ G +T +G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
G+ L+ Q+ +++IARA+L + IL+LDE T LD E+ERA+Q ALD L R++++I
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545
A RLS I AD I V+++G + E GTH ELLA +YA+L K +
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSM 835
L++ + ++ + +++ + + K+ +RR +F M+ V +FD++ S TL
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTLLS 126
Query: 836 RLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLS 890
R+ D+ V ++ S L +++ A++I I+ W+L+++ + PI+S++
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIA 181
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 250/510 (49%), Gaps = 26/510 (5%)
Query: 48 WIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107
W++ + + +R + L + FFD + GDI+S+V++DV I + L
Sbjct: 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDNINNVLGN 153
Query: 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXX 167
+ + + T + + F ++L+TL P V I + +
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213
Query: 168 XXXXXXXXXVSYIRTLYAFTNET--LAKYSYATS------LQATLRYGIL---ISLVQGL 216
+S + + FT E + K+ +A + G+L +++V L
Sbjct: 214 QLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNL 273
Query: 217 GLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276
G G G +L + G I T + LN+ + F
Sbjct: 274 GFALISGF-----------GGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322
Query: 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPA 336
+A R++E++ + D L V G IEF+NV+FSY + P+L +
Sbjct: 323 ALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKP 380
Query: 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL 396
+ VALVG GSGK++I+ L+ RFYD G++L+DG +I+ +K LRS IG+V Q+ L
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 397 LSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455
S ++++N+ YG AT ++I+EAAK+ H+ FI L +GYET + G L++ Q+ L
Sbjct: 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515
+I RA L NP IL+LDE T +D + E+++Q A+ LM G+++IIIA RL+ I+NAD I
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII 560
Query: 516 VMDEGRLFEMGTHDELLATGDLYAELLKCE 545
V+ +G + EMG HDEL+ Y EL +
Sbjct: 561 VLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 737 AAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYF 796
++I G +P Y+IG + + P R L + ++ LI+ + +T + +LQ
Sbjct: 49 SSILGVLSP---YLIGKTIDVVFVPR-RFDL---LPRYMLILGTIYALTSLLFWLQGKIM 101
Query: 797 GIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFI 856
+ + + R+R+ +F + R VG+FD + D +S R+ ND + N + F
Sbjct: 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH-GDIIS-RVINDVDNINNVLGNSIIQFF 159
Query: 857 QDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQVCT 897
+ AVI+ + L+LV L+ +P+ L I Q+ +
Sbjct: 160 SGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL--ITQIVS 198
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 149/490 (30%), Positives = 252/490 (51%), Gaps = 19/490 (3%)
Query: 65 IRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLA 124
+R R ++ + FFD + G ++S++ D + A S + + + A+ L
Sbjct: 100 MRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLT 158
Query: 125 IAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLY 184
+ F N WQ++L+ + P + A + +++ N + + +
Sbjct: 159 LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVL 218
Query: 185 AFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNK 244
++ + + + + + ++R + LV + I S AL + FL + +
Sbjct: 219 SYGGQEVERKRF-DKVSNSMRQQTM-KLVSAQSIADPVIQMIASLAL--FAVLFLASVDS 274
Query: 245 AHGGEIVTALFAVILSGL-GLN---QAATNFYS-FDQGRIAAYRLYEMISRSSSTTN--Y 297
E+ F V+ S + GL +A T+ S F +G A L+ ++ + N Y
Sbjct: 275 IRA-ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKY 333
Query: 298 DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357
+ V+G ++ ++V F+Y + E P LS ++P K VALVGR+GSGKS+I L
Sbjct: 334 EAE---RVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
Query: 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA--TLDQ 415
RFYD G + LDG ++++ KL LR LV+Q L + +I +NIAY + T +Q
Sbjct: 390 TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
IE+AA+ AHA FI ++ +G +T +G G +L+ Q+ +++IARA+L + +L+LDE T
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 476 GLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535
LD E+ERA+Q ALD L ++ ++IA RLS I AD I V+DEG + E G H +LLA
Sbjct: 510 ALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
Query: 536 DLYAELLKCE 545
YA+L + +
Sbjct: 570 GAYAQLHRIQ 579
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 806 RVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVA 865
++RR +F+ + V +FD+E S L R+ D+ V A S L +++ A++I
Sbjct: 99 QMRRRLFNHFMHMPVRFFDQE--STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGL 156
Query: 866 VIIGMLLEWRLALVALATLPILSLS 890
+ + W+L+LV + P+++ +
Sbjct: 157 LTLMFWNSWQLSLVLIVVAPVVAFA 181
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 174/284 (61%), Gaps = 3/284 (1%)
Query: 264 LNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRP 322
L + +F + Q + R++++I N G + G I+ +V F Y +
Sbjct: 294 LRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQY-NDN 352
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E PIL L++ + VA VG +G GKS++I L+ RFYD T G++L+DG NIK+
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 412
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
LR+QIGLV Q+ L S ++++NI GR AT +++ EAAK+A+AH FI +L +GY+T+VG
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
G+ L+ QK +LSIAR L NP IL+LDE T LD E+E +QEALD+L R+T+I+
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV 532
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545
A RLS I +AD I V++ G + E GTH EL+A Y L +
Sbjct: 533 AHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 157/243 (64%), Gaps = 5/243 (2%)
Query: 306 HGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
H +I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P
Sbjct: 1 HHDITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 58
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIA 423
G+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A
Sbjct: 59 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 118
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
AH FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 484 AVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELL 542
+ + + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 543 KCE 545
+ +
Sbjct: 239 QLQ 241
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 156/243 (64%), Gaps = 5/243 (2%)
Query: 306 HGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
H +I FRN+ F Y +P+ P IL L++ + + +VGR GSGKS++ L++RFY P
Sbjct: 1 HHDITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE 58
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIA 423
G+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A
Sbjct: 59 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 118
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
AH FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 484 AVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELL 542
+ + + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 543 KCE 545
+ +
Sbjct: 239 QLQ 241
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 308 NIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHA 425
+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKC 544
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 545 E 545
+
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 308 NIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHA 425
+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKC 544
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 545 E 545
+
Sbjct: 245 Q 245
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 308 NIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHA 425
+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKC 544
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 545 E 545
+
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 308 NIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHA 425
+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKC 544
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 545 E 545
+
Sbjct: 245 Q 245
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 308 NIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I FRN+ F Y +P+ P IL L++ + + +VGR+GSGKS++ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHA 425
+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ D+ T LD+E+E +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLKC 544
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 545 E 545
+
Sbjct: 245 Q 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 151/242 (62%), Gaps = 3/242 (1%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
G IEF NV+FSY E L TV + +ALVG +G+GKS+I+ L+ RFYD + G
Sbjct: 52 GRIEFENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425
+ +DG++I + LRS IG+V Q+ L + +I DNI YGR A D++E AA+ A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H I + +GY TQVG GL L+ +K +++IAR +L P I+LLDE T LD ERA+
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545
Q +L + R+TI++A RLS + NAD I V+ +G + E G H+ LL+ G +YA++ + +
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289
Query: 546 EA 547
+
Sbjct: 290 QG 291
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 7/317 (2%)
Query: 233 LWVGRFLVTHNKAHGGEIV--TALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290
LW G LV +N+ G I+ T I+ L + NF + +A R+ E+++
Sbjct: 265 LWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV--RASASAKRVLEVLNE 322
Query: 291 SSSTTNYDGN-TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349
+ D LP+V G++ F NV F Y + P+LSG +V VA++G GSG
Sbjct: 323 KPAIEEADNALALPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409
KS+++ L+ R DP G V +D +++ +KL+ LR I V QE L S +I++N+ +GR
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 410 -DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468
DAT D+I EAAKIA H FI SL +GY+++V R G + QK +LSIARA++ P +L
Sbjct: 442 EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528
+LD+ T +D E+ + + L G +T II +++ AD I V+ EG++ GTH
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561
Query: 529 DELLATGDLYAELLKCE 545
ELL Y E+ + +
Sbjct: 562 KELLEHCKPYREIYESQ 578
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 147/231 (63%), Gaps = 4/231 (1%)
Query: 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371
R+V F+Y +I L +A G +G GKS+I L+ERFY PT GE+ +D
Sbjct: 5 RHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 372 GENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAKIAHAHTFI 429
G+ I N+ LE RSQIG V+Q+ A+++ +IR+N+ YG D T + + + +A A +F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
++ T+VG G+ ++ Q+ +L+IARA L NP IL+LDE T LD E+E VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 490 DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
D LM GR+T++IA RLS I +AD I +++G++ G H+EL+AT LYA+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
+ G ++F++V F+Y +RP++ +L G T+ + ALVG NGSGKS++ L++ Y PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAKI 422
G++LLDG+ + + +L Q+ V QEP + S+++NIAYG + T+++I AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ AH+FIS L +GY+T+V AG L+ Q+ +++ARA++ P +L+LD+ T LD ++
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 483 RAVQEAL--DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLY 538
V++ L RS ++I + LSL+ AD+I ++ G + E GTH +L+ Y
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363
++ G ++F++V F+Y + P + +L G T+ K ALVG NGSGKS++ L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAK 421
T G+VLLDGE + +L +Q+ V QEP L S R+NIAYG R T+++I A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
+ AH FIS +GY+T+VG G L+ Q+ +++ARA++ P +L+LD+ T LD
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 482 ERAVQEAL--DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
+ VQ L R+ ++I +LSL A +I + EG + E GTH +L+ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 540 ELLK 543
+++
Sbjct: 252 SMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363
++ G ++F++V F+Y + P + +L G T+ K ALVG NGSGKS++ L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAK 421
T G+VLLDGE + +L +Q+ V QEP L S R+NIAYG R T+++I A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
+ AH FIS +GY+T+VG G L+ Q+ +++ARA++ P +L+LD T LD
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 482 ERAVQEAL--DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
+ VQ L R+ ++I ++LSL A +I + EG + E GTH +L+ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 540 ELLK 543
+++
Sbjct: 252 SMVE 255
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 165 bits (418), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 141/244 (57%), Gaps = 4/244 (1%)
Query: 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363
++ G ++F++V F+Y + P + +L G T+ K ALVG NGSGKS++ L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAK 421
T G+VLLDGE + +L +Q+ V QEP L S R+NIAYG R T+++I A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
+ AH FIS +GY+T+VG G L Q+ +++ARA++ P +L+LD T LD
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 482 ERAVQEAL--DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
+ VQ L R+ ++I ++LSL A +I + EG + E GTH +L+ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 540 ELLK 543
+++
Sbjct: 252 SMVE 255
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 143/235 (60%), Gaps = 2/235 (0%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
NIEF +V FSY + L +P+ ALVG GSGKS+I L+ RFYD G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAH 426
+ + G+N+ +RS IG+V Q+ L + +I+ NI YG+ DAT +++ +A K A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
FI +L K ++T VG G+ L+ ++ +++IAR +L +P I++ DE T LD + E Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
+A++ L R+ IIIA RLS I +A+ I ++++G++ E GTH +LL YAE+
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 27/244 (11%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+I RN F++ +R + P L+G ++P VA+VG+ G GKSS++ + D G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEA--AKIAHA 425
V + G + V Q+ + + S+R+NI +G Q+EE + A
Sbjct: 62 VAIKGS-------------VAYVPQQAWIQNDSLRENILFGC-----QLEEPYYRSVIQA 103
Query: 426 HTFISSLE---KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ LE G T++G G+ L+ QK ++S+ARAV N I L D+ +D
Sbjct: 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 483 RAVQEAL---DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
+ + E + ++ ++ I++ +S + D I VM G++ EMG++ ELLA +A
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223
Query: 540 ELLK 543
E L+
Sbjct: 224 EFLR 227
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
NV FS+L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ ++ +Q ++ +I++NI +G + + K I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD F E+ + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LM ++ I++ ++ +R AD I ++ +G + GT EL
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
NV FS+L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ ++ +Q ++ +I++NI +G + + K I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD F E+ + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LM ++ I++ ++ +R AD I ++ +G + GT EL
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KL 380
I L+ L VPA + ++G +G+GKS++I + PT G VL+DG+ + L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 381 EWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
R QIG++ Q LL S ++ N+A + +E + + L +++
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 137
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRS 497
L+ QK +++IARA+ NP +LL DE T LD R++ E L + LG +
Sbjct: 138 PSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 498 TIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
++I + ++ R D +AV+ G L E T E+ +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 14/220 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
NV FS+L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ ++ +Q ++ +I++NI G + + K I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD F E+ + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LM ++ I++ ++ +R AD I ++ +G + GT EL
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 14/220 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
NV FS+L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ ++ +Q ++ +I++NI G + + K I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD F E+ + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LM ++ I++ ++ +R AD I ++ +G + GT EL
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KL 380
I L+ L VPA + ++G +G+GKS++I + PT G VL+DG+ + L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 381 EWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
R QIG++ Q LL S ++ N+A + +E + + L +++
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRS 497
L+ QK +++IARA+ NP +LL D+ T LD R++ E L + LG +
Sbjct: 161 PSN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 498 TIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
++I + ++ R D +AV+ G L E T E+ +
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 15/223 (6%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+I +Q ++ +I++NI +G + K IS + +G G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIAR 503
+ L+E Q+ K+S+ARAV + + LLD G LD E+ + E+ + LM ++ I++
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 504 RLSLIRNADYIAVMDEGRLFEMGTHDELLA-TGDLYAELLKCE 545
++ ++ AD I ++ EG + GT EL D ++L+ C+
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCD 261
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KL 380
I L+ L VPA + ++G +G+GKS++I + PT G VL+DG+ + L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 381 EWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
R QIG + Q LL S ++ N+A + +E + + L +++
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRS 497
L+ QK +++IARA+ NP +LL D+ T LD R++ E L + LG +
Sbjct: 161 PSN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 498 TIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
++I ++ R D +AV+ G L E T E+ +
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 15/220 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
NV FS+L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ ++ +Q ++ +I++NI G + + K I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKF 145
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD F E+ + +
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 205
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LM ++ I++ ++ +R AD I ++ +G + GT EL
Sbjct: 206 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 23/220 (10%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLR 384
L G + + + A++G NG GKS++ P+ G +L D + I + + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 385 SQIGLVTQEP--ALLSLSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
IG+V Q+P L S S+ ++++G D+I + A T I L+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD----- 138
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-----L 494
+ L+ QK +++IA +++ P +L+LDE T GLD V E + LL+ L
Sbjct: 139 --KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD---PMGVSEIMKLLVEMQKEL 193
Query: 495 GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533
G + II + ++ D + VM EGR+ G E+ A
Sbjct: 194 GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 24/216 (11%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L+ L + + +AL+G +GSGKS+++ + Y PT G++ D +++ L +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 387 IGLVTQEPALLS-LSIRDNIAY-------GRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
+GLV Q AL +++ NIA+ R+ ++ E AK+ H ++
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-------- 128
Query: 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGR 496
R L+ Q+ +++IARA++ P +LLLDE LD V+ L L LG
Sbjct: 129 ---RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 497 STIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+T+ + + + AD IAV+ EG + ++GT DE+
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 307 GNIEFRNV--YFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
G IE NV F + E L L + + + + G GSGKS+++ ++ +PT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKI 422
G+VL DGE K + +R IG+ Q P + + D +A+ + +
Sbjct: 63 SGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
A F+ +++ R L+ +K +++IA ++ P IL+LDE GLD E +
Sbjct: 120 KKAMEFVG---LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 483 RAVQEALD-LLMLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+ ++ LG++ I+I+ + ++I + D + V+++G+ GT E L D
Sbjct: 177 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LS 400
L+G G+GKS + L+ P GEV L+G +I L E R IG V Q+ AL LS
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 401 IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460
+ NIAYG + A G + R L+ ++ ++++ARA
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKL------GIAHLLDRKPARLSGGERQRVALARA 140
Query: 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN---ADYIAVM 517
+++ P +LLLDE +D + + + E L + I+ LI AD +AVM
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 518 DEGRLFEMGTHDELLA 533
GR+ E G EL +
Sbjct: 201 LNGRIVEKGKLKELFS 216
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%)
Query: 316 FSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375
FS S P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 376 KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKG 435
+I +Q ++ +I++NI G + K IS +
Sbjct: 100 ----------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEK 149
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLML 494
+G G+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ + LM
Sbjct: 150 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 495 GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA-TGDLYAELLKCE 545
++ I++ ++ ++ AD I ++ EG + GT EL D ++L+ C+
Sbjct: 210 NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCD 261
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
+ G + + V L+G +GSGK++I+ L+ PT G+V + G+ + +L + +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 387 IGLVTQEPALLS-LSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+GLV Q AL +++ DN+++G R+ + + E A++ F+ E+ R
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR-----LESYANRFP 143
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA----VQEALDLLMLGRSTII 500
L+ Q+ ++++ARA+ P +LL DE +D + R V++ D + + S +
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-TSVFV 202
Query: 501 IARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + AD + V+ EG + + GT +E+
Sbjct: 203 THDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 16/235 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
+++FS S P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 40 SLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
+I +Q ++ +I++NI G + K IS
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKF 145
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDL 491
+ +G G+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ +
Sbjct: 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA-TGDLYAELLKCE 545
LM ++ I++ ++ ++ AD I ++ EG + GT EL D ++L+ C+
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCD 260
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L L + + + + G GSGKS+++ ++ +PT G+VL DGE K + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 387 IGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
IG+ Q P + + D +A+ + + A F+ +++ R
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG---LDFDSFKDRVP 136
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LLMLGRSTIIIAR 503
L+ +K +++IA ++ P IL+LDE GLD E + + ++ LG++ I+I+
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 504 RL-SLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+ ++I + D + V+++G+ GT E L D
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 69
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+I +Q ++ +I++NI +G + K IS + +G G
Sbjct: 70 -RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIAR 503
+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ + LM ++ I++
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 504 RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
++ ++ AD I ++ EG + GT EL
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 81
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+I +Q ++ +I++NI +G + K IS + +G G
Sbjct: 82 -RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIAR 503
+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ + LM ++ I++
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 504 RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
++ ++ AD I ++ EG + GT EL
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L L V + + ++G G+GK+ + L+ F+ P G +LLDG+++ +L E +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
I V Q +L ++++ N+ +G + +I++ ++ ++ + E + R L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRV-----LDTARDLKIEHLLDRNPL 126
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII---- 501
L+ ++ ++++ARA++ NP ILLLDE LD + +E L +L ++
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 502 ----ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
AR + AD IAV+ +G+L ++G +E+
Sbjct: 187 DQTEARIM-----ADRIAVVMDGKLIQVGKPEEI 215
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI--KNLKLE 381
+ +L G + + + V ++G +GSGKS+ + + D GE+++DG N+ K+ L
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440
+R ++G+V Q L +++ +NI E A+ A A + + G + +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-AKAMELLDKV--GLKDKA 153
Query: 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTI 499
+L+ Q +++IARA+ + P I+L DE T LD E V + L G + +
Sbjct: 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMV 213
Query: 500 IIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532
++ + R D + MD G + E G ++L
Sbjct: 214 VVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 16/223 (7%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+I +Q ++ +I++NI G + K IS + +G G
Sbjct: 100 -RISFCSQFSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIAR 503
+ L+E Q+ K+S+ARAV + + LLD G LD E+ + E+ + LM ++ I++
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 504 RLSLIRNADYIAVMDEGRLFEMGTHDELLA-TGDLYAELLKCE 545
++ ++ AD I ++ EG + GT EL D ++L+ C+
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCD 260
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 16/232 (6%)
Query: 316 FSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375
FS S P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 376 KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKG 435
+I +Q ++ +I++NI G + K IS +
Sbjct: 100 ----------RISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEK 148
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLML 494
+G G+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ + LM
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 495 GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA-TGDLYAELLKCE 545
++ I++ ++ ++ AD I ++ EG + GT EL D ++L+ C+
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCD 260
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
IL ++ + V L+GR GSGKS+++ R + T GE+ +DG + ++ LE R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
G++ Q+ + S + R N+ + +I + A + I + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGC 154
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ K + +AR+VL ILLLDE + LD + ++ L + I+ R+
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI 214
Query: 506 SLIRNADYIAVMDEGRL 522
+ D V++E ++
Sbjct: 215 EAMLECDQFLVIEENKV 231
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
+ G V + VAL+G +G GK++ + ++ Y PT GE+ D + ++ ++ +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--RE 76
Query: 387 IGLVTQEPALLS-LSIRDNIAY---GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442
+G+V Q AL +++ +NIA+ R + D++E+ I +L + R
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-------LDR 129
Query: 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTII 500
L+ Q+ ++++ARA++ P +LL DE LD ++ + L LG +++
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
Query: 501 IAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + + A IAV ++G+L + GT DE+
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 14/217 (6%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI--KNLKLE 381
+ +L G + + + V ++G +GSGKS+ + + D GE+++DG N+ K+ L
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440
+R ++G+V Q L +++ +NI E A+ A A + + G + +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-AKAMELLDKV--GLKDKA 132
Query: 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML----GR 496
+L+ Q +++IARA+ + P I+L DE T LD E V E L ++ G
Sbjct: 133 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 189
Query: 497 STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532
+ +++ + R D + MD G + E G ++L
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 314 VYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371
++ +LS+ P+L+ L++ + + ++G +G GK++++ + F P GE+ L
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 372 GENI--KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
G+ I KN L ++G + QE L L++ NIAYG + A
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG------NGKGRTAQERQR 118
Query: 429 ISSLEK--GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
I ++ + G GR L+ Q+ + ++ARA+ +P ++LLDE LD + R ++
Sbjct: 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178
Query: 487 EAL--DLLMLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
E + L G+S + ++ R ++ AD IAVM +GR+ + + EL
Sbjct: 179 EDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L + + +A+ G G+GK+S++ ++ +P+ G++ G
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 69
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+I +Q ++ +I++NI G + K IS + +G G
Sbjct: 70 -RISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIAR 503
+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ + LM ++ I++
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 504 RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
++ ++ AD I ++ EG + GT EL
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 309 IEFRNVYFSYLSRPEIPI-LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ +NV +Y EI L L + + V+++G +GSGKS+++ ++ PT GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 368 VLLDGENIKNLKLEWL----RSQIGLVTQE----PALLSL-SIRDNIAYGRDATLDQIEE 418
V +D +L + L R +IG V Q+ P L +L ++ + + + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG-EE 120
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
K A ++ LE+ + L+ Q+ +++IARA+ NP I+L D+ TG LD
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 479 FEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522
+ + + L L G++ +++ +++ R + I + +G +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 309 IEFRNVYFSYLSRPEIPI-LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ +NV +Y EI L L + + V++ G +GSGKS+ + ++ PT GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 368 VLLDGENIKNLKLEWL----RSQIGLVTQE----PALLSLSIRDNIAYGRDATLDQIEEA 419
V +D +L + L R +IG V Q+ P L +L + + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
K A + LE+ + L+ Q+ +++IARA+ NP I+L DE TG LD
Sbjct: 122 RKRALECLKXAELEERFANHKPNQ---LSGGQQQRVAIARALANNPPIILADEPTGALDS 178
Query: 480 EAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522
+ + + L L G++ +++ +++ R + I + +G +
Sbjct: 179 KTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
IL G + + L+G NG+GK++ + ++ P+ G V + G+N
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN----------- 78
Query: 386 QIGLVTQEPALLSLSIRDNIAY-----GRDATLDQIEEAAKIAHAHTFISS-LEKGYETQ 439
V +EP +R I+Y G + IE +A + SS +E+ E
Sbjct: 79 ----VVEEPH----EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 130
Query: 440 VGRAGLALTEEQKI---------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
AGL + ++ KL IARA+++NP + +LDE T GLD R V++ L
Sbjct: 131 TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 190
Query: 491 LLMLGRSTIIIARR--LSLIRNADYIAVMDEGRLFEMGTHDELLA------TGDLYAELL 542
TI+++ L + D IA++ G + E GT +EL +++ E++
Sbjct: 191 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV 250
Query: 543 KCEE 546
KC E
Sbjct: 251 KCSE 254
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
LT+ + + L+G +G GK++ + ++ +PT G + ++ L + I +V
Sbjct: 33 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 90
Query: 392 QEPALLS-LSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447
Q A+ +++ +NIA+ + D+I++ + A I L Y Q L
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-------L 143
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIAR-R 504
+ Q+ ++++ARA+++ P +LL+DE LD + A++ + L L +TI + +
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
Query: 505 LSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + D IAVM+ G+L ++G+ E+
Sbjct: 204 VEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
LT+ + + L+G +G GK++ + ++ +PT G + ++ L + I +V
Sbjct: 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 89
Query: 392 QEPALLS-LSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447
Q A+ +++ +NIA+ + D+I++ + A I L Y Q L
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-------L 142
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIAR-R 504
+ Q+ ++++ARA+++ P +LL+DE LD + A++ + L L +TI + +
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
Query: 505 LSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + D IAVM+ G+L ++G+ E+
Sbjct: 203 VEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 28/234 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE +V F Y +L K +VG+NGSGK++++ ++ GE+
Sbjct: 12 IELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPA--LLSLSIRDNIAYGRDAT-LDQIEEAAKIAHA 425
LDG LR +G V Q P+ ++ ++ +++A+ + LD+ E +I
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 426 HTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
VG +GLA L+ QK +L+IA + + L LDE LD
Sbjct: 125 LEL-----------VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 480 EAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532
++R + + L+ L G+ I++ L + + D+I + G + G+ +E +
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFV 227
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 9/181 (4%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI---KNLKLEW 382
IL G L+V + V+++G +GSGKS+++ ++ PT G+V L+G+ + +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 383 LRS-QIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440
LR+ ++G V Q L+ L+ +N+ +EA + +S L G ++
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE--RGEYLLSEL--GLGDKL 134
Query: 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII 500
R L+ ++ +++IARA+ P +L DE TG LD + V + + G ++I+
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 501 I 501
+
Sbjct: 195 M 195
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 324 IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383
I + G L VP + V L+G NG+GK++ + + G+++ +G++I N +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 384 -RSQIGLVTQEPALL-SLSIRDNI---AYGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
R I LV + + L++ +N+ AY R ++ I +I SL +
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAYNR-------KDKEGIKRDLEWIFSLFPRLKE 131
Query: 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRST 498
++ + G L+ ++ L+I RA+ P +L DE + GL V E + + +T
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 499 IIIARR--LSLIRNADYIAVMDEGRLFEMGTHDELL 532
I++ + L ++ A Y V++ G++ G ELL
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 37/240 (15%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+++ +NV ++ E+ + L + + V VG +G GKS+++ ++ T G+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----------DATLDQI 416
+ + GE N R +G+V Q AL LS+ +N+++G + ++Q+
Sbjct: 60 LFI-GEKRMNDTPPAERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
E ++AH + R AL+ Q+ +++I R ++ PS+ LLDE
Sbjct: 118 AEVLQLAHL--------------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 477 LDFEAERAVQEALDL----LMLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD A VQ +++ LGR+ I + ++ + AD I V+D GR+ ++G EL
Sbjct: 164 LD--AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 37/240 (15%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+++ +NV ++ E+ + L + + V VG +G GKS+++ ++ T G+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----------DATLDQI 416
+ + GE N R +G+V Q AL LS+ +N+++G + ++Q+
Sbjct: 60 LFI-GEKRMNDTPPAERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
E ++AH + R AL+ Q+ +++I R ++ PS+ LLDE
Sbjct: 118 AEVLQLAHL--------------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 477 LDFEAERAVQEALDL----LMLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD A VQ +++ LGR+ I + ++ + AD I V+D GR+ ++G EL
Sbjct: 164 LD--AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+++ L + + + VA++G NG+GKS+++ L+ + P+ GE L G+N+ + + + L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 386 QIGLVTQEPAL-LSLSIRDNIAYGRDA-TLDQIEEAAKIAHAHTFISSL-EKGYETQVGR 442
++ Q L S+ + I GR Q +A + A T +L ++ Y G
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSG- 144
Query: 443 AGLALTEEQKIKLSIARAVLLNPSI----LLLDEVTGGLDFEAERAVQEALDLL-MLGR- 496
E+Q+++L+ A L P L LDE T LD + Q L LL L R
Sbjct: 145 -----GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ---QHTLRLLRQLTRQ 196
Query: 497 ---STIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532
+ + L+L AD I ++ +G+L GT +E+L
Sbjct: 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LE 381
E L G ++V ++G NGSGKS++I ++ F G V + ++I N + E
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 382 WLRSQIGLVTQEP-ALLSLSIRDNIAYGR----DATLDQI---------EEAAKIAHAHT 427
I Q P L +++ +N+ G ++ L+ + EE + A
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE-VTGGLDFEAERAVQ 486
L Y+ + G L+ Q + I RA++ NP ++++DE + G A
Sbjct: 139 EFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 487 EALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
L+L G + +II RL ++ N D++ VM G++ G +E
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LE 381
E L G ++V ++G NGSGKS++I ++ F G V + ++I N + E
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 382 WLRSQIGLVTQEP-ALLSLSIRDNIAYGR----DATLDQI---------EEAAKIAHAHT 427
I Q P L +++ +N+ G ++ L+ + EE + A
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE-VTGGLDFEAERAVQ 486
L Y+ + G L+ Q + I RA++ NP ++++DE + G A
Sbjct: 139 EFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 487 EALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
L+L G + +II RL ++ N D++ VM G++ G +E
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 37/240 (15%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+++ +NV ++ E+ + L + + V VG +G GKS+++ ++ T G+
Sbjct: 3 SVQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----------DATLDQI 416
+ + GE N R +G+V Q AL LS+ +N+++G + ++Q+
Sbjct: 60 LFI-GEKRMNDTPPAERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
E ++AH + R AL+ Q+ +++I R ++ PS+ LLD+
Sbjct: 118 AEVLQLAHL--------------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSN 163
Query: 477 LDFEAERAVQEALDL----LMLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD A VQ +++ LGR+ I + ++ + AD I V+D GR+ ++G EL
Sbjct: 164 LD--AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTL 365
+E R+++ S IL G L VP + AL+G NG+GKS++ ++ + Y
Sbjct: 3 QLEIRDLWASIDGET---ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 366 GEVLLDGENIKNLKL-EWLRSQIGLVTQEPA---------LLSLSIRDNIAYGRDATLDQ 415
GE+LLDGENI L E R + L Q P L L+++ + GR+ + +
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL--GREVGVAE 117
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
K+ A + ++ Y ++ G + E+++ + I + ++L P+ +LDE
Sbjct: 118 F--WTKVKKALELL-DWDESYLSRYLNEGFSGGEKKRNE--ILQLLVLEPTYAVLDETDS 172
Query: 476 GLDFEAERAVQEALDLLM---LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD--- 529
GLD +A + V ++ + G I +R+ D + VM +GR+ G +
Sbjct: 173 GLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELAL 232
Query: 530 ELLATG 535
EL A G
Sbjct: 233 ELEAKG 238
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 18/227 (7%)
Query: 309 IEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
++ +NV +Y EI L L + + V+++G +GSGKS+++ ++ PT GE
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 368 VLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-LSIRDNIAYG-----RDATLDQIE 417
V +D +L + L R +IG V Q+ L+ L+ +N+ R A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM--SGE 119
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
E K A ++ LE+ + L+ Q+ +++IARA+ NP I+L D+ T L
Sbjct: 120 ERRKRALECLKMAELEERFANHKPN---QLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 478 DFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522
D + + + L L G++ +++ +++ R + I + +G +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LE 381
E L G ++V ++G NGSGKS++I ++ F G V + ++I N + E
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 382 WLRSQIGLVTQEP-ALLSLSIRDNIAYGR----DATLDQI---------EEAAKIAHAHT 427
I Q P L +++ +N+ G ++ L+ + EE + A
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE-VTGGLDFEAERAVQ 486
L Y+ + G L+ Q + I RA++ NP ++++D+ + G A
Sbjct: 139 EFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFN 194
Query: 487 EALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
L+L G + +II RL ++ N D++ VM G++ G +E
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN---LKLEWLRSQIGLVTQEPALL 397
++G +G+GK++ + ++ P+ GE+ D + + L + +IG+V Q AL
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 398 -SLSIRDNIAY-------GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
+L+ +NIA+ ++ ++EE AKI H ++ + L+
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSG 143
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARR-LS 506
Q+ ++++ARA++ +PS+LLLDE LD + + + + LG + ++++
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 507 LIRNADYIAVMDEGRLFEMGTHDEL 531
+ AD + V+ +G+L ++G ++L
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN---LKLEWLRSQIGLVTQEPALL 397
++G +G+GK++ + ++ P+ GE+ D + + L + +IG+V Q AL
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 398 -SLSIRDNIAY-------GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
+L+ +NIA+ ++ ++EE AKI H ++ + L+
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSG 143
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARR-LS 506
Q+ ++++ARA++ +PS+LLLDE LD + + + + LG + ++++
Sbjct: 144 GQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 507 LIRNADYIAVMDEGRLFEMGTHDEL 531
+ AD + V+ +G+L ++G ++L
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI----KNL 378
E+ + L V + + L+G +G GK++ + ++ +P+ G++ + + + K +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 379 KLEWLRSQIGLVTQEPALLS-LSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEK 434
+ I +V Q AL +++ DNIA+ R +I++ + ++ L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-- 132
Query: 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-- 492
+ R L+ Q+ ++++ RA++ P + L+DE LD + ++ L L
Sbjct: 133 -----LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 493 MLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LG +TI + ++ + D IAVM+ G L ++G+ DE+
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTLGEVLLDGENI 375
++S + IL G L V + A++G NGSGKS++ + Y+ T G V G+++
Sbjct: 8 HVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
Query: 376 KNLKLEWLRSQ-IGLVTQEPA---------LLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
L E + I + Q P L ++ +Y TLD+ + +
Sbjct: 68 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
I+ L+ + + + +K + I + +L P + +LDE GLD +A + V
Sbjct: 128 ---IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 486 QEALDLLMLGRSTIIIA----RRLSLIRNADYIAVMDEGRLFEMG 526
+ ++ L G+ + II R L I+ DY+ V+ +GR+ + G
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTLGEVLLDGENI 375
++S + IL G L V + A++G NGSGKS++ + Y+ T G V G+++
Sbjct: 27 HVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
Query: 376 KNLKLEWLRSQ-IGLVTQEPA---------LLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
L E + I + Q P L ++ +Y TLD+ + +
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
I+ L+ + + + +K + I + +L P + +LDE GLD +A + V
Sbjct: 147 ---IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 486 QEALDLLMLGRSTIIIA----RRLSLIRNADYIAVMDEGRLFEMG 526
+ ++ L G+ + II R L I+ DY+ V+ +GR+ + G
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSG 247
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT----L 365
+ R VY + I G L + A+VG + SGKS+II M + P
Sbjct: 9 DLRAVYL--VREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILS 66
Query: 366 GEVLLDGENIKNLKLEWLRS----QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAK 421
G VL G+++ ++ E LR +I LV Q A SL+ + T++ +
Sbjct: 67 GRVLYKGKDLLTMREEELRKIRWKEIALVPQA-AQQSLNPTMKVIEHFKDTVEA--HGVR 123
Query: 422 IAHAHTFISSLEK------GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
+H+ + EK E + L L+ K ++ IA A+LL+P +L+LDE T
Sbjct: 124 WSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 476 GLDF 479
LD
Sbjct: 184 ALDV 187
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 18/203 (8%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI----KNLKLEWLRSQIGLVTQEPA 395
+ L+G +G GK++ + + +PT G++ ++ + K + + + V Q A
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 396 LLS-LSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
L ++ DNIA+ R +I++ + ++ L + R L+ Q
Sbjct: 95 LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL-------LNRKPRELSGGQ 147
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIAR-RLSLI 508
+ ++++ RA++ P + L DE LD + + L L LG +TI + ++
Sbjct: 148 RQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAX 207
Query: 509 RNADYIAVMDEGRLFEMGTHDEL 531
D IAV ++G L ++GT DE+
Sbjct: 208 TXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 113/229 (49%), Gaps = 26/229 (11%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI---------- 375
+L G L A ++++G +GSGKS+ + + P+ G ++++G+NI
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 376 ----KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430
KN +L LR+++ +V Q L S +++ +N+ L + A+ A +++
Sbjct: 81 KVADKN-QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-ERALKYLA 138
Query: 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
+ Q G+ + L+ Q+ ++SIARA+ + P +LL DE T LD E V E L
Sbjct: 139 KVGIDERAQ-GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVLR 194
Query: 491 LLML----GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534
++ G++ +++ + R+ + ++ + +G++ E G +++
Sbjct: 195 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLRSQIGLVTQEPALLS- 398
L G NG+GK++++ ++ + T G V L G+ + E +R IG V+ +LL
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSH--SLLEK 109
Query: 399 -------LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
+ + + A+ I++ + AH + + + Q L+ E+Q
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGXSAKAQQYIGYLSTGEKQ 168
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
++ IARA+ P +L+LDE GLDF A
Sbjct: 169 RV--XIARALXGQPQVLILDEPAAGLDFIA 196
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 404 NIAYGRDATLDQIEEAAK----IAHAHTFISSLEKGYETQVGRAGLALT--EEQKIKL-S 456
NI+ D T+D+ E K I + + GY ++G+ L+ E Q+IKL S
Sbjct: 760 NISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLAS 818
Query: 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYI 514
R ++ +LDE T GL FE R + E L L+ G + I+I L +I+NAD+I
Sbjct: 819 ELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDLLMLGRSTIIIAR 503
L+ E Q+I+L+ L I +LDE T GL + ER ++ L LG + I++
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 504 RLSLIRNADYI------AVMDEGRLFEMGTHDELLATGD--LYAELL--KCEEAAKLPRR 553
+IRNAD+I + GR+ GT DELL D L E L K + RR
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTRR 584
Query: 554 MPVRNYK 560
+P + K
Sbjct: 585 LPYASLK 591
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R++ Y + P+L +T+ V G NG GK++++ + + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIA-----YGRDATLDQIEEAAKI 422
+ +G I +K +I + +E + +S+ D + YG ++I +A +
Sbjct: 67 IYNGVPITKVK-----GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
L + + + R LA T +L+N I +LD+ +D +++
Sbjct: 122 VEVLDLKKKLGELSQGTIRRVQLAST------------LLVNAEIYVLDDPVVAIDEDSK 169
Query: 483 RAVQEALDLLMLGRSTIIIARRLSL 507
V +++ ++ + +II+ R L
Sbjct: 170 HKVLKSILEILKEKGIVIISSREEL 194
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
AL+ K+KL++ARAVL N ILLLDE T LD
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 261 GLGLNQAATNFYSFDQGRIAAYRLYEMISRSS-----STTNYDGNTLPSVHGNIEFRNVY 315
GL L + NF F + + A + YE +S + Y ++ N+
Sbjct: 620 GLKLRKYKGNFTEFVK-KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNME 678
Query: 316 FSY--LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
F Y S+P+I ++ F ++ ++ +A++G NG+GKS++I ++ PT GEV
Sbjct: 679 FQYPGTSKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK+KL +A P +++LDE T LD ++ A+ +AL G III
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSA 958
Query: 506 SLIRN-ADYIAVMDEGRLFEMG 526
+N + + + +GR+ G
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 42/161 (26%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ-EPALLS 398
+A++G+NG GKS+++ L+ + P G K+E +S IG V Q + +
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQG------------KIEVYQS-IGFVPQFFSSPFA 80
Query: 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL------------- 445
S+ D + GR H +TF K ++ QV L
Sbjct: 81 YSVLDIVLMGRS------------THINTFAKP--KSHDYQVAMQALDYLNLTHLAKREF 126
Query: 446 -ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
+L+ Q+ + IARA+ ++LLDE T LD + V
Sbjct: 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
AL+ K KL++ARAVL N ILLLDE T LD
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 261 GLGLNQAATNFYSFDQGRIAAYRLYEMISRSS-----STTNYDGNTLPSVHGNIEFRNVY 315
GL L + NF F + + A + YE +S + Y ++ N
Sbjct: 620 GLKLRKYKGNFTEFVK-KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXE 678
Query: 316 FSY--LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
F Y S+P+I ++ F ++ ++ +A++G NG+GKS++I ++ PT GEV
Sbjct: 679 FQYPGTSKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK+KL +A P +++LDE T LD ++ A+ +AL G III
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSA 958
Query: 506 SLIRN-ADYIAVMDEGRLFEMG 526
+N + + + +GR G
Sbjct: 959 EFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT--EEQKIKLSI 457
+I D +A D D + + I A + + GY ++G+ L+ E Q+IKL+
Sbjct: 685 NIADVLALTVDEAHDFFADESAIFRALDTLREVGLGY-LRLGQPATELSGGEAQRIKLAT 743
Query: 458 A-RAVLLNPSILLLDEVTGGL-DFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI- 514
R ++ +LDE T GL + ER ++ + L+ G + I + ++ ++ +D++
Sbjct: 744 ELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803
Query: 515 -----AVMDEGRLFEMGTHDELL-ATGDLYAELLKC 544
A D GRL GT E+ A G + A L+
Sbjct: 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRA 839
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
AL+ K KL++ARAVL N ILLLDE T LD
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 261 GLGLNQAATNFYSFDQGRIAAYRLYEMISRSS-----STTNYDGNTLPSVHGNIEFRNVY 315
GL L + NF F + + A + YE +S + Y ++ N
Sbjct: 614 GLKLRKYKGNFTEFVK-KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXE 672
Query: 316 FSY--LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
F Y S+P+I ++ F ++ ++ +A++G NG+GKS++I ++ PT GEV
Sbjct: 673 FQYPGTSKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK+KL +A P +++LDE T LD ++ A+ +AL G III
Sbjct: 895 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSA 952
Query: 506 SLIRN-ADYIAVMDEGRLFEMG 526
+N + + + +GR G
Sbjct: 953 EFTKNLTEEVWAVKDGRXTPSG 974
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIII 501
A L+ E Q+I+L+ L + +LDE + GL R + E L L LG + I++
Sbjct: 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVV 579
Query: 502 ARRLSLIRNADYI------AVMDEGRLFEMGTHDELLATGD-LYAELLKCEEAAKLP 551
I +AD+I A GR+ G +DELL D + L E+ ++P
Sbjct: 580 EHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEIP 636
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 12/110 (10%)
Query: 416 IEEAAK----IAHAHTFISSLEK---GYETQVGRAGLALT--EEQKIKL-SIARAVLLNP 465
IEEAA+ IA H ++ +L GY ++G+ L+ E Q++KL S +
Sbjct: 827 IEEAAEFFEPIAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGR 885
Query: 466 SILLLDEVTGGLDFEAERAVQEALD-LLMLGRSTIIIARRLSLIRNADYI 514
++ +LDE T GL F+ R + ++ L+ G + I+I L +I+ +D+I
Sbjct: 886 TVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,090,999
Number of Sequences: 62578
Number of extensions: 984914
Number of successful extensions: 2249
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2003
Number of HSP's gapped (non-prelim): 138
length of query: 922
length of database: 14,973,337
effective HSP length: 108
effective length of query: 814
effective length of database: 8,214,913
effective search space: 6686939182
effective search space used: 6686939182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)